Query 010827
Match_columns 500
No_of_seqs 330 out of 3224
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 05:00:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010827.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010827hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1252 Ndh NADH dehydrogenase 100.0 5.9E-54 1.3E-58 423.4 38.1 360 78-497 2-376 (405)
2 PTZ00318 NADH dehydrogenase-li 100.0 6.3E-49 1.4E-53 403.7 40.4 357 77-497 8-393 (424)
3 TIGR03169 Nterm_to_SelD pyridi 100.0 2.3E-46 5.1E-51 378.6 36.5 354 81-499 1-358 (364)
4 PRK09754 phenylpropionate diox 100.0 8.6E-40 1.9E-44 333.6 31.4 323 79-470 3-333 (396)
5 KOG2495 NADH-dehydrogenase (ub 100.0 6.5E-40 1.4E-44 314.1 27.7 367 75-497 51-460 (491)
6 PRK13512 coenzyme A disulfide 100.0 2.7E-38 5.9E-43 326.2 29.6 299 80-447 2-311 (438)
7 PRK04965 NADH:flavorubredoxin 100.0 1.1E-37 2.4E-42 316.2 30.9 321 79-472 2-329 (377)
8 PRK14989 nitrite reductase sub 100.0 8.1E-38 1.7E-42 341.4 31.9 304 79-448 3-310 (847)
9 TIGR01424 gluta_reduc_2 glutat 100.0 1.9E-37 4E-42 320.9 30.1 287 79-447 2-325 (446)
10 PRK09564 coenzyme A disulfide 100.0 1.4E-37 3E-42 322.7 28.3 304 80-447 1-316 (444)
11 COG1249 Lpd Pyruvate/2-oxoglut 100.0 2.6E-37 5.7E-42 313.1 28.5 315 78-470 3-360 (454)
12 TIGR01421 gluta_reduc_1 glutat 100.0 8.4E-37 1.8E-41 315.8 30.9 286 79-447 2-327 (450)
13 PRK06116 glutathione reductase 100.0 5.2E-37 1.1E-41 318.5 29.3 286 79-447 4-327 (450)
14 TIGR02374 nitri_red_nirB nitri 100.0 1.1E-36 2.3E-41 333.2 32.1 296 82-447 1-300 (785)
15 PLN02507 glutathione reductase 100.0 1.4E-36 3.1E-41 317.0 31.5 291 77-447 23-362 (499)
16 PRK06370 mercuric reductase; V 100.0 1.2E-36 2.6E-41 316.7 30.8 314 78-470 4-359 (463)
17 PRK05249 soluble pyridine nucl 100.0 2.6E-36 5.5E-41 314.6 31.7 292 78-447 4-334 (461)
18 PLN02546 glutathione reductase 100.0 2.4E-36 5.1E-41 316.7 31.2 288 78-447 78-412 (558)
19 PRK06467 dihydrolipoamide dehy 100.0 2.9E-36 6.3E-41 313.5 31.6 294 78-447 3-336 (471)
20 PRK06416 dihydrolipoamide dehy 100.0 1.9E-36 4.1E-41 315.5 29.8 293 78-447 3-333 (462)
21 PRK08010 pyridine nucleotide-d 100.0 4.4E-36 9.5E-41 310.8 31.3 291 79-447 3-316 (441)
22 TIGR02053 MerA mercuric reduct 100.0 2.7E-36 5.8E-41 314.3 29.4 291 80-448 1-329 (463)
23 PRK06115 dihydrolipoamide dehy 100.0 1.1E-35 2.4E-40 308.9 29.6 318 79-470 3-362 (466)
24 PRK07251 pyridine nucleotide-d 100.0 2E-35 4.3E-40 305.6 31.1 289 79-447 3-315 (438)
25 PRK07845 flavoprotein disulfid 100.0 2.2E-35 4.7E-40 306.8 30.2 292 79-447 1-336 (466)
26 PRK07846 mycothione reductase; 100.0 5.6E-35 1.2E-39 302.0 30.2 308 80-470 2-351 (451)
27 TIGR01292 TRX_reduct thioredox 100.0 1.7E-35 3.7E-40 291.2 25.0 290 80-449 1-300 (300)
28 PRK14694 putative mercuric red 100.0 1.6E-34 3.5E-39 300.8 33.6 290 76-447 3-334 (468)
29 PTZ00058 glutathione reductase 100.0 9.8E-35 2.1E-39 304.3 32.1 315 74-448 43-432 (561)
30 TIGR01423 trypano_reduc trypan 100.0 4.9E-35 1.1E-39 303.6 29.4 290 78-447 2-350 (486)
31 PRK10262 thioredoxin reductase 100.0 4.7E-35 1E-39 290.7 24.4 301 76-451 3-316 (321)
32 PRK07818 dihydrolipoamide dehy 100.0 3.2E-34 7E-39 298.6 31.7 293 79-447 4-335 (466)
33 PRK05976 dihydrolipoamide dehy 100.0 2E-34 4.3E-39 300.6 30.1 301 78-447 3-342 (472)
34 PRK13748 putative mercuric red 100.0 2.1E-34 4.6E-39 307.3 30.4 289 78-447 97-427 (561)
35 PRK06292 dihydrolipoamide dehy 100.0 3.5E-34 7.5E-39 298.5 30.0 291 78-448 2-331 (460)
36 PRK14727 putative mercuric red 100.0 5.7E-34 1.2E-38 297.2 31.6 313 78-470 15-370 (479)
37 TIGR01438 TGR thioredoxin and 100.0 3.8E-34 8.2E-39 297.7 30.0 293 79-447 2-343 (484)
38 TIGR01350 lipoamide_DH dihydro 100.0 7.9E-34 1.7E-38 296.0 32.2 290 80-448 2-332 (461)
39 PRK06912 acoL dihydrolipoamide 100.0 1.1E-33 2.4E-38 293.7 29.7 289 81-447 2-329 (458)
40 TIGR03452 mycothione_red mycot 100.0 2.5E-33 5.4E-38 290.0 31.0 287 79-448 2-328 (452)
41 COG0492 TrxB Thioredoxin reduc 100.0 4.4E-34 9.6E-39 276.4 23.3 290 78-451 2-302 (305)
42 PTZ00052 thioredoxin reductase 100.0 3.5E-33 7.6E-38 291.8 31.8 309 79-469 5-365 (499)
43 PRK12831 putative oxidoreducta 100.0 7.4E-34 1.6E-38 294.0 24.2 310 76-452 137-463 (464)
44 PRK06327 dihydrolipoamide dehy 100.0 7.6E-33 1.6E-37 288.6 31.8 296 79-447 4-346 (475)
45 PTZ00153 lipoamide dehydrogena 100.0 1.4E-32 3E-37 291.6 33.4 298 79-448 116-495 (659)
46 PRK11749 dihydropyrimidine deh 100.0 2.1E-33 4.6E-38 291.5 24.9 352 24-452 83-454 (457)
47 TIGR01316 gltA glutamate synth 100.0 3.7E-33 7.9E-38 288.3 25.5 304 77-449 131-449 (449)
48 TIGR03140 AhpF alkyl hydropero 100.0 2.3E-33 4.9E-38 294.8 23.2 294 77-450 210-513 (515)
49 KOG1336 Monodehydroascorbate/f 100.0 4.8E-33 1E-37 272.2 23.2 317 79-461 74-397 (478)
50 PRK09853 putative selenate red 100.0 3.1E-33 6.8E-38 303.1 23.4 303 77-450 537-842 (1019)
51 TIGR03143 AhpF_homolog putativ 100.0 9E-33 1.9E-37 292.4 24.2 293 79-451 4-310 (555)
52 PRK15317 alkyl hydroperoxide r 100.0 1.4E-32 3E-37 289.2 24.3 294 77-451 209-513 (517)
53 TIGR03385 CoA_CoA_reduc CoA-di 100.0 5.5E-32 1.2E-36 279.3 26.6 291 93-448 1-304 (427)
54 TIGR03315 Se_ygfK putative sel 100.0 4.9E-32 1.1E-36 295.4 25.5 301 77-450 535-840 (1012)
55 PRK12814 putative NADPH-depend 100.0 3.2E-32 6.8E-37 292.6 21.5 350 29-456 144-507 (652)
56 PRK12810 gltD glutamate syntha 100.0 1.2E-31 2.6E-36 279.0 24.5 315 77-456 141-471 (471)
57 COG1251 NirB NAD(P)H-nitrite r 100.0 5.9E-32 1.3E-36 275.9 21.5 345 79-496 3-355 (793)
58 KOG1335 Dihydrolipoamide dehyd 100.0 1.2E-31 2.6E-36 253.1 20.7 299 78-448 38-377 (506)
59 PRK12779 putative bifunctional 100.0 4.3E-31 9.2E-36 291.2 28.4 317 77-451 304-628 (944)
60 PRK12778 putative bifunctional 100.0 4.6E-31 1E-35 289.1 27.1 310 77-452 429-752 (752)
61 PRK12770 putative glutamate sy 100.0 1.2E-30 2.7E-35 262.0 26.9 320 77-451 16-351 (352)
62 KOG0405 Pyridine nucleotide-di 100.0 7.2E-31 1.6E-35 244.9 21.4 293 77-448 18-350 (478)
63 PRK12775 putative trifunctiona 100.0 5.6E-31 1.2E-35 292.8 23.6 309 78-453 429-758 (1006)
64 TIGR01318 gltD_gamma_fam gluta 100.0 4.3E-29 9.3E-34 258.9 23.7 304 78-450 140-466 (467)
65 TIGR01317 GOGAT_sm_gam glutama 100.0 2.7E-29 5.8E-34 261.5 21.8 325 78-456 142-485 (485)
66 PRK12769 putative oxidoreducta 100.0 1.6E-28 3.5E-33 265.1 23.7 305 77-452 325-654 (654)
67 PLN02852 ferredoxin-NADP+ redu 100.0 1.7E-27 3.7E-32 244.3 26.7 318 77-452 24-424 (491)
68 KOG0404 Thioredoxin reductase 100.0 4.2E-28 9E-33 213.4 17.8 294 79-450 8-319 (322)
69 COG3634 AhpF Alkyl hydroperoxi 100.0 8.7E-29 1.9E-33 230.9 14.3 297 76-449 208-514 (520)
70 PRK13984 putative oxidoreducta 100.0 2.7E-27 5.8E-32 254.2 26.4 318 77-451 281-603 (604)
71 KOG4716 Thioredoxin reductase 100.0 2.2E-28 4.9E-33 227.4 12.7 206 188-447 158-364 (503)
72 PRK12809 putative oxidoreducta 100.0 5.6E-27 1.2E-31 252.0 25.4 306 78-452 309-637 (639)
73 PRK12771 putative glutamate sy 99.9 9.9E-27 2.1E-31 247.4 22.8 302 77-454 135-448 (564)
74 TIGR01372 soxA sarcosine oxida 99.9 1.2E-25 2.6E-30 251.8 27.6 303 78-451 162-473 (985)
75 KOG1346 Programmed cell death 99.9 1.5E-26 3.2E-31 220.5 16.2 322 79-463 178-534 (659)
76 COG0446 HcaD Uncharacterized N 99.9 3.8E-24 8.1E-29 220.1 27.6 302 82-448 1-310 (415)
77 KOG3851 Sulfide:quinone oxidor 99.9 9.6E-25 2.1E-29 201.9 17.2 331 77-464 37-374 (446)
78 PLN02172 flavin-containing mon 99.9 1.2E-24 2.5E-29 224.2 18.6 283 77-449 8-352 (461)
79 PRK06567 putative bifunctional 99.9 2.5E-22 5.3E-27 215.6 23.0 295 76-452 380-772 (1028)
80 COG0493 GltD NADPH-dependent g 99.9 7.6E-22 1.6E-26 200.7 19.4 322 77-451 121-453 (457)
81 PF00743 FMO-like: Flavin-bind 99.9 4.6E-22 9.9E-27 207.6 12.4 317 79-447 1-394 (531)
82 KOG0399 Glutamate synthase [Am 99.9 6.2E-22 1.3E-26 207.1 12.4 314 76-453 1782-2123(2142)
83 PF13434 K_oxygenase: L-lysine 99.8 7.5E-19 1.6E-23 174.2 14.0 245 79-372 2-340 (341)
84 PF07992 Pyr_redox_2: Pyridine 99.8 9.5E-20 2.1E-24 168.3 6.4 148 81-251 1-159 (201)
85 COG3486 IucD Lysine/ornithine 99.8 4.3E-17 9.3E-22 157.4 23.9 289 77-419 3-388 (436)
86 KOG2755 Oxidoreductase [Genera 99.8 1.4E-18 2.9E-23 157.2 12.2 290 81-419 1-322 (334)
87 PTZ00188 adrenodoxin reductase 99.7 8.1E-17 1.8E-21 162.9 19.2 105 76-205 36-140 (506)
88 KOG1399 Flavin-containing mono 99.7 2.5E-17 5.5E-22 166.9 13.3 231 77-381 4-277 (448)
89 PF13738 Pyr_redox_3: Pyridine 99.7 2.1E-18 4.6E-23 159.6 5.1 164 83-281 1-201 (203)
90 KOG1800 Ferredoxin/adrenodoxin 99.7 9.9E-17 2.1E-21 152.6 15.8 312 78-450 19-407 (468)
91 COG1148 HdrA Heterodisulfide r 99.7 9.7E-16 2.1E-20 150.0 23.0 327 77-451 122-546 (622)
92 COG2072 TrkA Predicted flavopr 99.7 2.5E-17 5.5E-22 169.2 11.8 177 77-283 6-211 (443)
93 PRK05329 anaerobic glycerol-3- 99.5 4E-13 8.6E-18 136.4 19.0 169 248-449 219-420 (422)
94 COG2081 Predicted flavoprotein 99.5 9E-12 2E-16 121.2 20.5 107 78-201 2-165 (408)
95 COG4529 Uncharacterized protei 99.4 7.4E-11 1.6E-15 117.7 23.4 175 79-280 1-231 (474)
96 PF00070 Pyr_redox: Pyridine n 99.2 1.5E-10 3.2E-15 89.8 9.9 70 246-318 1-70 (80)
97 PRK09897 hypothetical protein; 99.0 4.3E-09 9.4E-14 110.1 13.6 172 79-281 1-246 (534)
98 TIGR00136 gidA glucose-inhibit 99.0 4.6E-08 1E-12 102.5 19.4 48 397-453 347-394 (617)
99 PF03486 HI0933_like: HI0933-l 98.9 1.6E-09 3.4E-14 110.0 7.3 108 80-203 1-166 (409)
100 PRK05192 tRNA uridine 5-carbox 98.9 1E-07 2.2E-12 100.0 18.4 43 399-450 351-393 (618)
101 PLN02463 lycopene beta cyclase 98.9 1.4E-08 3.1E-13 104.5 11.9 113 76-205 25-171 (447)
102 TIGR03378 glycerol3P_GlpB glyc 98.8 2.7E-07 5.9E-12 93.0 16.7 155 257-445 236-418 (419)
103 PRK12842 putative succinate de 98.8 5.5E-09 1.2E-13 111.8 4.9 102 244-373 157-275 (574)
104 PRK13977 myosin-cross-reactive 98.7 5E-07 1.1E-11 94.1 16.6 46 77-124 20-65 (576)
105 PRK06847 hypothetical protein; 98.7 1E-07 2.3E-12 96.8 10.7 111 78-205 3-165 (375)
106 TIGR02032 GG-red-SF geranylger 98.6 1.2E-07 2.5E-12 92.8 9.8 34 80-119 1-34 (295)
107 TIGR01790 carotene-cycl lycope 98.6 1.1E-07 2.3E-12 97.2 9.7 107 81-203 1-141 (388)
108 PRK08773 2-octaprenyl-3-methyl 98.6 1.4E-07 3.1E-12 96.5 10.5 36 77-118 4-39 (392)
109 PRK07804 L-aspartate oxidase; 98.6 6.2E-07 1.3E-11 95.3 15.3 58 392-450 356-414 (541)
110 PRK04176 ribulose-1,5-biphosph 98.6 2.8E-06 6E-11 81.3 17.0 178 245-451 26-256 (257)
111 PRK09754 phenylpropionate diox 98.6 2.4E-07 5.3E-12 94.8 10.4 99 79-205 144-243 (396)
112 PRK07843 3-ketosteroid-delta-1 98.6 1.1E-07 2.4E-12 101.4 8.0 72 244-318 160-238 (557)
113 PF00070 Pyr_redox: Pyridine n 98.6 2.3E-07 5E-12 71.8 7.7 70 81-167 1-71 (80)
114 PF01266 DAO: FAD dependent ox 98.6 1.3E-07 2.9E-12 94.9 8.0 32 81-118 1-32 (358)
115 PRK04965 NADH:flavorubredoxin 98.6 3.5E-07 7.7E-12 93.0 11.1 100 79-205 141-241 (377)
116 PRK04176 ribulose-1,5-biphosph 98.6 2.9E-07 6.3E-12 88.0 9.7 37 78-120 24-60 (257)
117 PF13454 NAD_binding_9: FAD-NA 98.6 6.8E-07 1.5E-11 78.8 11.4 107 83-201 1-155 (156)
118 TIGR00551 nadB L-aspartate oxi 98.6 1.9E-06 4.1E-11 90.6 16.3 57 392-449 332-389 (488)
119 PRK08275 putative oxidoreducta 98.5 8.6E-07 1.9E-11 94.6 13.8 50 394-451 357-406 (554)
120 COG0644 FixC Dehydrogenases (f 98.5 3.4E-07 7.3E-12 93.7 10.1 39 78-122 2-40 (396)
121 PRK09231 fumarate reductase fl 98.5 1.8E-06 3.9E-11 92.4 15.9 59 392-451 357-416 (582)
122 PRK06263 sdhA succinate dehydr 98.5 1.8E-06 3.9E-11 92.0 15.7 58 393-451 348-405 (543)
123 PRK07333 2-octaprenyl-6-methox 98.5 2.5E-07 5.3E-12 95.0 8.9 36 79-118 1-36 (403)
124 PLN02697 lycopene epsilon cycl 98.5 3.5E-07 7.7E-12 95.9 10.1 110 78-203 107-248 (529)
125 PRK07364 2-octaprenyl-6-methox 98.5 5.6E-07 1.2E-11 92.8 11.5 36 78-119 17-52 (415)
126 TIGR02023 BchP-ChlP geranylger 98.5 3.5E-07 7.6E-12 93.4 9.9 32 80-117 1-32 (388)
127 PF01134 GIDA: Glucose inhibit 98.5 3.2E-07 6.9E-12 91.5 8.8 105 81-201 1-150 (392)
128 PRK10157 putative oxidoreducta 98.5 4.1E-07 8.9E-12 94.0 10.0 36 78-119 4-39 (428)
129 PRK06834 hypothetical protein; 98.5 5.5E-07 1.2E-11 94.4 10.9 111 79-206 3-159 (488)
130 PRK05714 2-octaprenyl-3-methyl 98.5 4.8E-07 1E-11 92.9 10.2 34 79-118 2-35 (405)
131 PRK07251 pyridine nucleotide-d 98.5 6.3E-07 1.4E-11 93.0 11.1 99 79-206 157-256 (438)
132 PRK07608 ubiquinone biosynthes 98.5 5.1E-07 1.1E-11 92.2 10.1 35 79-119 5-39 (388)
133 TIGR01292 TRX_reduct thioredox 98.5 1.2E-06 2.7E-11 85.8 12.3 100 246-378 2-117 (300)
134 PF05834 Lycopene_cycl: Lycope 98.5 8.1E-07 1.8E-11 90.1 11.1 109 81-204 1-143 (374)
135 PRK06184 hypothetical protein; 98.5 7.1E-07 1.5E-11 94.3 11.1 34 79-118 3-36 (502)
136 PRK07236 hypothetical protein; 98.5 9.4E-07 2E-11 90.2 11.4 37 77-119 4-40 (386)
137 COG1249 Lpd Pyruvate/2-oxoglut 98.5 9.5E-07 2.1E-11 90.6 11.2 103 77-207 171-276 (454)
138 TIGR03385 CoA_CoA_reduc CoA-di 98.5 9E-07 2E-11 91.6 11.2 99 79-206 137-236 (427)
139 COG1635 THI4 Ribulose 1,5-bisp 98.5 6.9E-07 1.5E-11 80.1 8.6 38 79-122 30-67 (262)
140 PRK10015 oxidoreductase; Provi 98.5 7.3E-07 1.6E-11 92.0 10.1 35 79-119 5-39 (429)
141 PRK08163 salicylate hydroxylas 98.5 8.3E-07 1.8E-11 90.9 10.3 36 78-119 3-38 (396)
142 PRK13800 putative oxidoreducta 98.5 8.9E-07 1.9E-11 99.5 11.3 50 393-450 361-410 (897)
143 PRK08071 L-aspartate oxidase; 98.4 3.4E-06 7.4E-11 89.0 15.0 56 393-449 332-388 (510)
144 PRK07494 2-octaprenyl-6-methox 98.4 8E-07 1.7E-11 90.8 9.8 35 78-118 6-40 (388)
145 PF01494 FAD_binding_3: FAD bi 98.4 2.7E-06 5.8E-11 85.3 13.3 36 80-121 2-37 (356)
146 TIGR00137 gid_trmFO tRNA:m(5)U 98.4 7.9E-06 1.7E-10 82.9 16.4 51 399-458 321-371 (433)
147 TIGR00292 thiazole biosynthesi 98.4 1.4E-06 2.9E-11 83.1 10.4 38 78-121 20-57 (254)
148 PRK09126 hypothetical protein; 98.4 8.9E-07 1.9E-11 90.6 9.8 36 78-119 2-37 (392)
149 PRK05976 dihydrolipoamide dehy 98.4 1.3E-06 2.8E-11 91.6 11.2 101 79-207 180-285 (472)
150 PRK08020 ubiF 2-octaprenyl-3-m 98.4 1.1E-06 2.3E-11 89.9 10.3 35 78-118 4-38 (391)
151 COG0029 NadB Aspartate oxidase 98.4 1.1E-06 2.4E-11 88.2 9.8 56 393-450 341-398 (518)
152 PRK06416 dihydrolipoamide dehy 98.4 1.3E-06 2.8E-11 91.4 11.0 101 79-207 172-276 (462)
153 PRK05732 2-octaprenyl-6-methox 98.4 1.2E-06 2.5E-11 89.7 10.0 37 78-117 2-38 (395)
154 TIGR01988 Ubi-OHases Ubiquinon 98.4 1.2E-06 2.6E-11 89.3 9.8 33 81-119 1-33 (385)
155 TIGR00292 thiazole biosynthesi 98.4 5.6E-06 1.2E-10 78.9 13.6 180 245-449 22-253 (254)
156 PRK09077 L-aspartate oxidase; 98.4 6.2E-06 1.3E-10 87.7 15.3 57 393-450 353-410 (536)
157 TIGR01350 lipoamide_DH dihydro 98.4 1.7E-06 3.7E-11 90.5 10.8 100 79-206 170-272 (461)
158 PRK07190 hypothetical protein; 98.4 1.7E-06 3.7E-11 90.7 10.7 34 79-118 5-38 (487)
159 PRK13512 coenzyme A disulfide 98.4 1.9E-06 4E-11 89.4 10.7 96 79-206 148-244 (438)
160 PRK06134 putative FAD-binding 98.4 1.5E-06 3.3E-11 93.2 10.2 38 78-121 11-48 (581)
161 PLN00093 geranylgeranyl diphos 98.4 2.3E-06 5E-11 88.6 11.3 36 77-118 37-72 (450)
162 COG0654 UbiH 2-polyprenyl-6-me 98.4 1.6E-06 3.4E-11 88.6 9.9 33 79-117 2-34 (387)
163 PRK06912 acoL dihydrolipoamide 98.4 2.2E-06 4.8E-11 89.5 11.2 99 79-206 170-271 (458)
164 TIGR02028 ChlP geranylgeranyl 98.4 1.5E-06 3.2E-11 89.0 9.7 34 80-119 1-34 (398)
165 COG2081 Predicted flavoprotein 98.4 2.3E-06 4.9E-11 84.0 10.3 96 245-372 4-166 (408)
166 TIGR02734 crtI_fam phytoene de 98.4 1E-05 2.2E-10 85.7 16.3 37 82-124 1-37 (502)
167 PRK08013 oxidoreductase; Provi 98.4 1.7E-06 3.8E-11 88.7 10.2 35 79-119 3-37 (400)
168 TIGR01984 UbiH 2-polyprenyl-6- 98.4 1.4E-06 3E-11 88.8 9.4 33 81-119 1-34 (382)
169 PRK08849 2-octaprenyl-3-methyl 98.4 1.7E-06 3.8E-11 88.1 9.8 34 79-118 3-36 (384)
170 PRK05249 soluble pyridine nucl 98.3 2.8E-06 6.1E-11 88.9 11.3 100 79-206 175-275 (461)
171 PRK08850 2-octaprenyl-6-methox 98.3 2E-06 4.3E-11 88.4 10.0 33 79-117 4-36 (405)
172 PRK05868 hypothetical protein; 98.3 3.2E-06 6.9E-11 85.8 11.2 35 79-119 1-35 (372)
173 PRK11728 hydroxyglutarate oxid 98.3 2.4E-06 5.2E-11 87.4 10.0 36 79-118 2-37 (393)
174 PRK06116 glutathione reductase 98.3 3.4E-06 7.5E-11 87.9 11.3 102 79-207 167-269 (450)
175 PRK07233 hypothetical protein; 98.3 4.3E-06 9.3E-11 86.6 12.0 38 81-124 1-38 (434)
176 PRK11259 solA N-methyltryptoph 98.3 2.4E-06 5.3E-11 86.8 9.9 34 79-118 3-36 (376)
177 COG2907 Predicted NAD/FAD-bind 98.3 2.3E-05 5E-10 75.1 15.5 41 78-125 7-47 (447)
178 PRK07045 putative monooxygenas 98.3 2.8E-06 6E-11 86.8 10.3 36 78-119 4-39 (388)
179 PRK09564 coenzyme A disulfide 98.3 3E-06 6.4E-11 88.2 10.6 99 79-205 149-248 (444)
180 TIGR01424 gluta_reduc_2 glutat 98.3 3.3E-06 7.2E-11 87.8 10.9 100 79-206 166-266 (446)
181 TIGR03329 Phn_aa_oxid putative 98.3 2.9E-06 6.3E-11 88.6 10.3 38 77-118 22-59 (460)
182 PRK06753 hypothetical protein; 98.3 2.9E-06 6.2E-11 86.2 9.8 34 80-119 1-34 (373)
183 PRK06327 dihydrolipoamide dehy 98.3 4E-06 8.6E-11 88.0 10.9 101 79-207 183-288 (475)
184 TIGR02374 nitri_red_nirB nitri 98.3 3.3E-06 7.1E-11 93.6 10.7 100 79-205 140-240 (785)
185 PRK07588 hypothetical protein; 98.3 3.1E-06 6.7E-11 86.5 9.8 34 80-119 1-34 (391)
186 PRK06370 mercuric reductase; V 98.3 4.8E-06 1E-10 87.1 11.4 100 79-206 171-274 (463)
187 TIGR01377 soxA_mon sarcosine o 98.3 2.9E-06 6.3E-11 86.3 9.5 33 80-118 1-33 (380)
188 TIGR01421 gluta_reduc_1 glutat 98.3 4.1E-06 8.9E-11 87.1 10.6 101 79-206 166-268 (450)
189 PRK08401 L-aspartate oxidase; 98.3 4.5E-06 9.7E-11 87.2 10.7 56 392-448 309-365 (466)
190 PRK07845 flavoprotein disulfid 98.3 5.2E-06 1.1E-10 86.8 11.0 101 79-207 177-278 (466)
191 COG0445 GidA Flavin-dependent 98.3 1.2E-05 2.7E-10 81.6 12.9 45 400-453 352-396 (621)
192 TIGR02053 MerA mercuric reduct 98.3 4.9E-06 1.1E-10 87.0 10.7 101 79-207 166-270 (463)
193 PRK08244 hypothetical protein; 98.3 4.1E-06 8.9E-11 88.4 10.1 34 79-118 2-35 (493)
194 PLN02507 glutathione reductase 98.2 5.9E-06 1.3E-10 87.0 11.1 101 79-207 203-304 (499)
195 TIGR01423 trypano_reduc trypan 98.2 5.9E-06 1.3E-10 86.5 11.0 104 79-206 187-291 (486)
196 PRK07818 dihydrolipoamide dehy 98.2 5.9E-06 1.3E-10 86.5 11.0 100 79-206 172-276 (466)
197 PRK06617 2-octaprenyl-6-methox 98.2 4.3E-06 9.4E-11 84.9 9.6 32 80-117 2-33 (374)
198 PRK07846 mycothione reductase; 98.2 7.4E-06 1.6E-10 85.2 11.4 100 79-207 166-266 (451)
199 PRK06126 hypothetical protein; 98.2 7E-06 1.5E-10 87.7 11.5 36 78-119 6-41 (545)
200 PRK06185 hypothetical protein; 98.2 6E-06 1.3E-10 84.9 10.5 35 78-118 5-39 (407)
201 TIGR00275 flavoprotein, HI0933 98.2 3.2E-06 6.9E-11 86.5 8.2 40 400-442 360-399 (400)
202 COG0446 HcaD Uncharacterized N 98.2 4.9E-06 1.1E-10 85.4 9.7 101 79-204 136-238 (415)
203 COG1635 THI4 Ribulose 1,5-bisp 98.2 3E-05 6.5E-10 69.8 13.1 179 245-451 31-261 (262)
204 COG3380 Predicted NAD/FAD-depe 98.2 3.1E-06 6.7E-11 78.3 7.1 33 80-118 2-34 (331)
205 PF13450 NAD_binding_8: NAD(P) 98.2 2.1E-06 4.5E-11 64.0 4.6 33 84-122 1-33 (68)
206 PRK14989 nitrite reductase sub 98.2 5.9E-06 1.3E-10 91.8 10.1 102 79-205 145-247 (847)
207 TIGR01789 lycopene_cycl lycope 98.2 8.6E-06 1.9E-10 82.4 10.4 35 81-119 1-35 (370)
208 PF12831 FAD_oxidored: FAD dep 98.2 1.6E-06 3.5E-11 89.5 5.2 36 81-122 1-36 (428)
209 TIGR03219 salicylate_mono sali 98.2 5.1E-06 1.1E-10 85.6 8.9 34 80-119 1-35 (414)
210 PTZ00383 malate:quinone oxidor 98.2 1E-05 2.2E-10 84.5 11.1 40 77-120 43-82 (497)
211 PRK08132 FAD-dependent oxidore 98.2 2E-05 4.4E-10 84.2 13.7 37 77-119 21-57 (547)
212 PRK14694 putative mercuric red 98.2 1E-05 2.2E-10 84.7 11.2 99 79-207 178-277 (468)
213 PF01946 Thi4: Thi4 family; PD 98.2 1.6E-06 3.5E-11 78.3 4.3 38 79-122 17-54 (230)
214 TIGR03452 mycothione_red mycot 98.2 1.2E-05 2.6E-10 83.7 11.4 100 79-207 169-269 (452)
215 TIGR03364 HpnW_proposed FAD de 98.2 8E-06 1.7E-10 82.6 9.7 33 80-118 1-33 (365)
216 PRK08243 4-hydroxybenzoate 3-m 98.2 1.1E-05 2.3E-10 82.6 10.6 35 79-119 2-36 (392)
217 COG3075 GlpB Anaerobic glycero 98.2 8.1E-05 1.8E-09 70.9 15.4 136 287-450 257-418 (421)
218 PRK06115 dihydrolipoamide dehy 98.2 1.2E-05 2.6E-10 84.1 11.1 101 78-206 173-279 (466)
219 PRK11445 putative oxidoreducta 98.2 8.6E-06 1.9E-10 82.0 9.7 34 79-119 1-34 (351)
220 PTZ00318 NADH dehydrogenase-li 98.1 1.1E-05 2.4E-10 83.3 10.5 99 80-204 174-281 (424)
221 KOG1336 Monodehydroascorbate/f 98.1 1.1E-05 2.4E-10 80.7 9.7 106 79-209 213-319 (478)
222 PRK08010 pyridine nucleotide-d 98.1 1.3E-05 2.9E-10 83.3 10.9 99 79-206 158-257 (441)
223 PRK06183 mhpA 3-(3-hydroxyphen 98.1 1.3E-05 2.9E-10 85.4 11.2 36 77-118 8-43 (538)
224 COG1252 Ndh NADH dehydrogenase 98.1 6.8E-06 1.5E-10 82.4 8.2 100 79-204 155-263 (405)
225 KOG2820 FAD-dependent oxidored 98.1 7.6E-06 1.7E-10 78.1 8.0 35 78-118 6-40 (399)
226 PRK06996 hypothetical protein; 98.1 9.6E-06 2.1E-10 83.1 9.5 40 77-118 9-48 (398)
227 PF04820 Trp_halogenase: Trypt 98.1 5.9E-06 1.3E-10 85.7 8.0 53 143-204 160-212 (454)
228 TIGR02360 pbenz_hydroxyl 4-hyd 98.1 1.1E-05 2.4E-10 82.3 9.8 35 79-119 2-36 (390)
229 PLN02661 Putative thiazole syn 98.1 8.4E-05 1.8E-09 73.2 15.1 180 245-451 93-329 (357)
230 COG1053 SdhA Succinate dehydro 98.1 1E-05 2.2E-10 85.4 9.2 63 393-456 355-419 (562)
231 PRK01747 mnmC bifunctional tRN 98.1 1E-05 2.3E-10 88.3 9.7 33 80-118 261-293 (662)
232 PRK13369 glycerol-3-phosphate 98.1 1.2E-05 2.5E-10 85.0 9.5 36 77-118 4-39 (502)
233 PTZ00052 thioredoxin reductase 98.1 2E-05 4.2E-10 83.1 11.1 100 79-207 182-282 (499)
234 PTZ00058 glutathione reductase 98.1 1.9E-05 4.1E-10 83.8 10.9 101 79-206 237-339 (561)
235 COG0579 Predicted dehydrogenas 98.1 1.5E-05 3.3E-10 80.5 9.6 37 78-118 2-38 (429)
236 PRK06292 dihydrolipoamide dehy 98.1 2.1E-05 4.5E-10 82.3 10.8 102 78-207 168-272 (460)
237 PRK06481 fumarate reductase fl 98.1 4.2E-05 9.2E-10 80.8 13.0 60 391-450 440-504 (506)
238 PRK06475 salicylate hydroxylas 98.1 1.9E-05 4.1E-10 81.0 10.0 33 80-118 3-35 (400)
239 PLN02985 squalene monooxygenas 98.1 3E-05 6.6E-10 81.7 11.6 37 76-118 40-76 (514)
240 TIGR03169 Nterm_to_SelD pyridi 98.0 1.4E-05 3.1E-10 80.8 8.8 101 246-378 1-112 (364)
241 PRK13748 putative mercuric red 98.0 2.5E-05 5.3E-10 83.9 11.0 98 79-206 270-368 (561)
242 TIGR03140 AhpF alkyl hydropero 98.0 3.9E-05 8.5E-10 81.2 12.3 100 244-375 212-325 (515)
243 COG0665 DadA Glycine/D-amino a 98.0 2.1E-05 4.4E-10 80.3 9.9 35 78-118 3-37 (387)
244 PRK00711 D-amino acid dehydrog 98.0 0.00022 4.8E-09 73.5 17.6 33 81-119 2-34 (416)
245 PRK06467 dihydrolipoamide dehy 98.0 2.5E-05 5.4E-10 81.8 10.6 100 79-207 174-278 (471)
246 PRK15317 alkyl hydroperoxide r 98.0 4.6E-05 1E-09 80.8 12.6 100 244-375 211-324 (517)
247 PF03486 HI0933_like: HI0933-l 98.0 1.1E-05 2.4E-10 82.1 7.4 98 246-374 2-167 (409)
248 PRK14727 putative mercuric red 98.0 3E-05 6.5E-10 81.4 10.8 98 79-206 188-286 (479)
249 PLN02661 Putative thiazole syn 98.0 3.1E-05 6.8E-10 76.2 9.9 39 77-120 90-128 (357)
250 PTZ00153 lipoamide dehydrogena 98.0 2.9E-05 6.3E-10 83.7 10.4 103 79-207 312-431 (659)
251 COG1232 HemY Protoporphyrinoge 98.0 3.8E-05 8.2E-10 78.3 10.6 39 80-122 1-39 (444)
252 PLN02529 lysine-specific histo 98.0 5E-06 1.1E-10 90.1 4.5 59 47-124 141-199 (738)
253 TIGR01438 TGR thioredoxin and 98.0 3.4E-05 7.5E-10 80.9 10.5 99 79-206 180-282 (484)
254 COG1231 Monoamine oxidase [Ami 98.0 0.00012 2.6E-09 73.2 13.5 44 77-126 5-48 (450)
255 COG2509 Uncharacterized FAD-de 98.0 0.00029 6.3E-09 70.3 16.0 73 278-379 163-235 (486)
256 PRK11101 glpA sn-glycerol-3-ph 98.0 3.1E-05 6.7E-10 82.5 10.0 34 79-118 6-39 (546)
257 PRK05945 sdhA succinate dehydr 98.0 3.7E-05 8E-10 82.5 10.4 58 393-450 351-414 (575)
258 PRK13339 malate:quinone oxidor 98.0 1.8E-05 3.9E-10 82.4 7.6 42 77-122 4-45 (497)
259 KOG0029 Amine oxidase [Seconda 98.0 8.4E-06 1.8E-10 84.8 5.2 44 75-124 11-54 (501)
260 PF13738 Pyr_redox_3: Pyridine 98.0 3.3E-05 7.2E-10 71.1 8.7 93 248-371 1-136 (203)
261 PLN02172 flavin-containing mon 97.9 8.8E-05 1.9E-09 77.1 12.2 139 244-418 10-215 (461)
262 TIGR01989 COQ6 Ubiquinone bios 97.9 3.8E-05 8.3E-10 79.7 9.3 36 80-117 1-36 (437)
263 PLN02546 glutathione reductase 97.9 5.3E-05 1.2E-09 80.5 10.5 101 79-206 252-353 (558)
264 PRK06847 hypothetical protein; 97.9 0.00011 2.3E-09 74.7 12.3 99 244-374 4-164 (375)
265 TIGR01320 mal_quin_oxido malat 97.9 0.00023 5E-09 74.5 14.7 36 80-119 1-36 (483)
266 TIGR01373 soxB sarcosine oxida 97.9 6E-05 1.3E-09 77.5 10.2 36 78-118 29-65 (407)
267 PRK06175 L-aspartate oxidase; 97.9 6.1E-05 1.3E-09 77.9 9.8 58 392-450 330-388 (433)
268 TIGR01813 flavo_cyto_c flavocy 97.9 7.3E-05 1.6E-09 77.7 10.4 33 81-119 1-34 (439)
269 PRK12779 putative bifunctional 97.9 4.2E-05 9.2E-10 85.9 9.1 67 242-311 304-379 (944)
270 PRK10262 thioredoxin reductase 97.9 0.00016 3.4E-09 71.8 12.3 100 243-376 5-120 (321)
271 TIGR01812 sdhA_frdA_Gneg succi 97.8 6.5E-05 1.4E-09 80.7 9.8 58 392-450 341-403 (566)
272 PTZ00363 rab-GDP dissociation 97.8 0.00073 1.6E-08 69.7 16.6 41 78-124 3-43 (443)
273 PTZ00367 squalene epoxidase; P 97.8 0.00011 2.4E-09 78.1 10.7 35 78-118 32-66 (567)
274 PRK07236 hypothetical protein; 97.8 0.00018 3.9E-09 73.4 11.9 36 244-282 6-41 (386)
275 COG1233 Phytoene dehydrogenase 97.8 2.2E-05 4.8E-10 82.4 5.0 41 78-124 2-42 (487)
276 KOG2415 Electron transfer flav 97.8 3E-05 6.5E-10 75.9 5.3 49 77-125 74-122 (621)
277 PRK09853 putative selenate red 97.8 0.0001 2.2E-09 82.1 10.1 66 243-311 538-612 (1019)
278 PRK07573 sdhA succinate dehydr 97.8 0.00017 3.7E-09 78.1 11.5 51 393-444 406-456 (640)
279 PF07992 Pyr_redox_2: Pyridine 97.8 2.7E-05 5.8E-10 71.5 4.5 149 246-419 1-199 (201)
280 TIGR02032 GG-red-SF geranylger 97.8 0.00017 3.8E-09 70.2 10.4 97 246-373 2-148 (295)
281 PRK06452 sdhA succinate dehydr 97.7 0.00014 3E-09 77.9 9.9 60 392-451 345-405 (566)
282 PRK07208 hypothetical protein; 97.7 3.6E-05 7.9E-10 80.9 5.3 41 77-123 2-42 (479)
283 PRK11749 dihydropyrimidine deh 97.7 7.6E-05 1.6E-09 77.9 7.6 66 243-311 139-213 (457)
284 PRK07803 sdhA succinate dehydr 97.7 0.00011 2.4E-09 79.5 9.0 58 393-450 391-448 (626)
285 PRK11883 protoporphyrinogen ox 97.7 3.2E-05 6.9E-10 80.6 4.8 41 80-124 1-41 (451)
286 PRK12843 putative FAD-binding 97.7 0.00035 7.5E-09 75.1 12.6 40 78-123 15-54 (578)
287 PRK12770 putative glutamate sy 97.7 0.00013 2.9E-09 73.4 8.9 69 244-315 18-95 (352)
288 PLN02328 lysine-specific histo 97.7 4.7E-05 1E-09 83.1 6.0 43 76-124 235-277 (808)
289 KOG1335 Dihydrolipoamide dehyd 97.7 0.00011 2.3E-09 71.5 7.5 101 79-206 211-317 (506)
290 COG3349 Uncharacterized conser 97.7 3.6E-05 7.9E-10 78.3 4.6 39 80-124 1-39 (485)
291 PLN02852 ferredoxin-NADP+ redu 97.7 0.00014 3.1E-09 75.6 9.1 65 244-311 26-102 (491)
292 PRK06834 hypothetical protein; 97.7 0.00037 8E-09 73.3 12.3 98 245-374 4-157 (488)
293 TIGR01317 GOGAT_sm_gam glutama 97.7 0.00013 2.9E-09 76.5 8.8 67 243-312 142-217 (485)
294 PRK08255 salicylyl-CoA 5-hydro 97.7 4.9E-05 1.1E-09 84.2 5.6 36 80-119 1-36 (765)
295 PLN02268 probable polyamine ox 97.7 4.5E-05 9.8E-10 79.1 5.1 39 80-124 1-39 (435)
296 KOG2853 Possible oxidoreductas 97.7 0.00016 3.6E-09 69.1 8.1 39 78-118 85-123 (509)
297 PRK06069 sdhA succinate dehydr 97.7 0.00019 4E-09 77.2 9.6 57 393-450 352-415 (577)
298 TIGR01318 gltD_gamma_fam gluta 97.7 0.00014 3E-09 76.0 8.4 66 243-311 140-214 (467)
299 TIGR01176 fum_red_Fp fumarate 97.6 0.00024 5.1E-09 76.2 10.1 57 393-451 357-415 (580)
300 PF01134 GIDA: Glucose inhibit 97.6 0.00037 7.9E-09 69.9 10.6 94 246-371 1-150 (392)
301 TIGR01316 gltA glutamate synth 97.6 0.00015 3.2E-09 75.5 8.2 66 243-311 132-206 (449)
302 PRK01438 murD UDP-N-acetylmura 97.6 0.00028 6E-09 74.2 10.1 84 78-211 15-98 (480)
303 PRK12831 putative oxidoreducta 97.6 0.00022 4.9E-09 74.4 9.1 67 242-311 138-214 (464)
304 PLN02576 protoporphyrinogen ox 97.6 6.7E-05 1.4E-09 79.3 5.2 41 78-124 11-52 (496)
305 TIGR00562 proto_IX_ox protopor 97.6 6.2E-05 1.3E-09 78.8 4.8 44 79-124 2-45 (462)
306 PRK08773 2-octaprenyl-3-methyl 97.6 0.00049 1.1E-08 70.3 11.1 34 244-280 6-39 (392)
307 PRK08163 salicylate hydroxylas 97.6 0.00061 1.3E-08 69.7 11.8 35 244-281 4-38 (396)
308 TIGR03143 AhpF_homolog putativ 97.6 0.00061 1.3E-08 72.8 12.0 98 245-376 5-117 (555)
309 PF01266 DAO: FAD dependent ox 97.5 0.00049 1.1E-08 68.9 10.4 31 246-279 1-31 (358)
310 PRK06184 hypothetical protein; 97.5 0.0007 1.5E-08 71.6 12.0 100 245-373 4-168 (502)
311 PRK12778 putative bifunctional 97.5 0.00026 5.6E-09 78.6 8.8 67 242-311 429-504 (752)
312 PRK08205 sdhA succinate dehydr 97.5 0.00043 9.3E-09 74.5 10.2 58 393-450 356-419 (583)
313 COG0492 TrxB Thioredoxin reduc 97.5 0.0031 6.6E-08 61.7 15.2 98 245-376 4-118 (305)
314 PRK07333 2-octaprenyl-6-methox 97.5 0.00067 1.4E-08 69.6 11.2 97 246-374 3-168 (403)
315 PRK08244 hypothetical protein; 97.5 0.00074 1.6E-08 71.3 11.8 100 246-374 4-160 (493)
316 PRK08294 phenol 2-monooxygenas 97.5 0.00022 4.8E-09 77.3 7.8 38 77-119 30-67 (634)
317 PLN02927 antheraxanthin epoxid 97.5 0.00014 2.9E-09 78.2 6.0 36 77-118 79-114 (668)
318 PRK05335 tRNA (uracil-5-)-meth 97.5 0.00011 2.3E-09 74.3 4.8 49 398-455 321-369 (436)
319 PLN02487 zeta-carotene desatur 97.5 0.0002 4.4E-09 76.0 7.1 39 78-122 74-112 (569)
320 KOG2495 NADH-dehydrogenase (ub 97.5 0.00013 2.9E-09 71.9 5.2 102 79-204 218-330 (491)
321 PRK12775 putative trifunctiona 97.5 0.00027 5.9E-09 80.2 8.4 66 243-311 429-503 (1006)
322 PRK07588 hypothetical protein; 97.5 0.00083 1.8E-08 68.7 11.3 33 246-281 2-34 (391)
323 PRK12810 gltD glutamate syntha 97.5 0.00032 6.9E-09 73.5 8.1 66 243-311 142-216 (471)
324 PLN02463 lycopene beta cyclase 97.5 0.0009 1.9E-08 69.3 11.0 96 246-374 30-170 (447)
325 PRK12416 protoporphyrinogen ox 97.4 0.00012 2.7E-09 76.5 4.7 45 80-124 2-46 (463)
326 PRK12809 putative oxidoreducta 97.4 0.00034 7.3E-09 76.1 8.2 66 243-311 309-383 (639)
327 PRK07538 hypothetical protein; 97.4 0.00013 2.7E-09 75.3 4.7 34 80-119 1-34 (413)
328 PRK05868 hypothetical protein; 97.4 0.0013 2.8E-08 66.8 11.9 35 245-282 2-36 (372)
329 PRK09897 hypothetical protein; 97.4 0.0013 2.7E-08 69.5 11.9 38 245-283 2-39 (534)
330 PF00743 FMO-like: Flavin-bind 97.4 0.00062 1.4E-08 71.9 9.7 144 245-418 2-194 (531)
331 TIGR03315 Se_ygfK putative sel 97.4 0.00039 8.4E-09 77.9 8.4 64 243-309 536-608 (1012)
332 PRK07364 2-octaprenyl-6-methox 97.4 0.0013 2.8E-08 67.8 11.8 34 245-281 19-52 (415)
333 PRK12409 D-amino acid dehydrog 97.4 0.00016 3.4E-09 74.4 5.1 34 80-119 2-35 (410)
334 TIGR02733 desat_CrtD C-3',4' d 97.4 0.00016 3.4E-09 76.4 5.1 39 80-124 2-40 (492)
335 PRK12769 putative oxidoreducta 97.4 0.00036 7.9E-09 76.1 8.1 66 243-311 326-400 (654)
336 PRK12266 glpD glycerol-3-phosp 97.4 0.00018 3.9E-09 76.0 5.4 37 77-119 4-40 (508)
337 TIGR00031 UDP-GALP_mutase UDP- 97.4 0.00019 4.2E-09 72.2 5.2 37 80-122 2-38 (377)
338 KOG0685 Flavin-containing amin 97.4 0.00017 3.8E-09 72.2 4.7 41 77-122 19-59 (498)
339 PRK06475 salicylate hydroxylas 97.4 0.0015 3.2E-08 67.0 11.7 34 245-281 3-36 (400)
340 TIGR02731 phytoene_desat phyto 97.4 0.00017 3.7E-09 75.2 4.8 38 81-124 1-38 (453)
341 PRK12814 putative NADPH-depend 97.4 0.00046 1E-08 75.1 8.1 66 243-311 192-266 (652)
342 PRK10157 putative oxidoreducta 97.3 0.0018 3.8E-08 67.0 11.6 33 245-280 6-38 (428)
343 TIGR01984 UbiH 2-polyprenyl-6- 97.3 0.0016 3.6E-08 66.2 11.0 33 246-281 1-34 (382)
344 PLN02568 polyamine oxidase 97.3 0.00029 6.4E-09 74.6 5.5 45 78-123 4-48 (539)
345 PRK07190 hypothetical protein; 97.3 0.0021 4.6E-08 67.5 11.9 33 245-280 6-38 (487)
346 TIGR01372 soxA sarcosine oxida 97.3 0.0024 5.2E-08 72.9 13.1 70 244-316 163-244 (985)
347 PRK07512 L-aspartate oxidase; 97.3 0.00073 1.6E-08 71.5 8.3 57 393-450 341-398 (513)
348 TIGR01988 Ubi-OHases Ubiquinon 97.3 0.002 4.2E-08 65.6 11.2 33 246-281 1-33 (385)
349 PRK08274 tricarballylate dehyd 97.3 0.00029 6.2E-09 73.9 5.1 59 392-450 398-462 (466)
350 PRK05714 2-octaprenyl-3-methyl 97.3 0.0017 3.7E-08 66.7 10.7 32 246-280 4-35 (405)
351 PRK01438 murD UDP-N-acetylmura 97.3 0.00061 1.3E-08 71.7 7.5 81 244-379 16-96 (480)
352 PRK09126 hypothetical protein; 97.3 0.0024 5.1E-08 65.3 11.5 33 246-281 5-37 (392)
353 PRK06183 mhpA 3-(3-hydroxyphen 97.2 0.0027 5.9E-08 67.7 12.1 34 244-280 10-43 (538)
354 PF00890 FAD_binding_2: FAD bi 97.2 0.00034 7.3E-09 72.2 5.0 34 81-120 1-34 (417)
355 PTZ00188 adrenodoxin reductase 97.2 0.0013 2.7E-08 67.9 8.9 64 244-310 39-113 (506)
356 COG0654 UbiH 2-polyprenyl-6-me 97.2 0.0027 5.8E-08 64.8 11.3 98 245-373 3-162 (387)
357 PLN02676 polyamine oxidase 97.2 0.0004 8.7E-09 72.9 5.3 42 77-124 24-66 (487)
358 TIGR02730 carot_isom carotene 97.2 0.00037 8E-09 73.6 5.0 37 80-122 1-37 (493)
359 PRK07608 ubiquinone biosynthes 97.2 0.003 6.5E-08 64.4 11.5 35 245-282 6-40 (388)
360 PRK06753 hypothetical protein; 97.2 0.002 4.3E-08 65.3 10.1 34 246-282 2-35 (373)
361 PF06039 Mqo: Malate:quinone o 97.2 0.00024 5.2E-09 71.5 3.1 39 78-120 2-40 (488)
362 PRK12771 putative glutamate sy 97.2 0.00098 2.1E-08 71.5 7.9 67 242-311 135-210 (564)
363 PRK08013 oxidoreductase; Provi 97.2 0.0032 6.9E-08 64.6 11.2 34 245-281 4-37 (400)
364 PRK07121 hypothetical protein; 97.2 0.00065 1.4E-08 71.7 6.2 36 78-119 19-54 (492)
365 TIGR00137 gid_trmFO tRNA:m(5)U 97.1 0.00038 8.2E-09 70.8 4.2 34 246-282 2-35 (433)
366 PRK13984 putative oxidoreducta 97.1 0.0011 2.5E-08 71.7 8.1 66 243-311 282-356 (604)
367 KOG0399 Glutamate synthase [Am 97.1 0.00089 1.9E-08 73.1 6.9 94 243-377 1784-1886(2142)
368 PRK10015 oxidoreductase; Provi 97.1 0.0037 8E-08 64.7 11.3 32 246-280 7-38 (429)
369 KOG1346 Programmed cell death 97.1 0.00089 1.9E-08 65.8 6.2 106 78-206 346-452 (659)
370 PRK06617 2-octaprenyl-6-methox 97.1 0.0037 8.1E-08 63.5 11.1 31 246-279 3-33 (374)
371 TIGR02485 CobZ_N-term precorri 97.1 0.0017 3.8E-08 67.2 8.6 55 393-449 368-430 (432)
372 TIGR02732 zeta_caro_desat caro 97.1 0.0005 1.1E-08 72.0 4.6 36 81-122 1-36 (474)
373 KOG2852 Possible oxidoreductas 97.1 0.0022 4.8E-08 60.3 8.0 42 77-118 8-49 (380)
374 PRK06996 hypothetical protein; 97.1 0.0039 8.4E-08 63.9 10.8 102 245-372 12-173 (398)
375 TIGR00275 flavoprotein, HI0933 97.1 0.0029 6.3E-08 64.8 9.8 31 248-281 1-31 (400)
376 KOG1276 Protoporphyrinogen oxi 97.1 0.00081 1.8E-08 66.6 5.4 42 77-122 9-50 (491)
377 PLN02612 phytoene desaturase 97.1 0.00078 1.7E-08 72.1 5.8 42 77-124 91-132 (567)
378 PRK08020 ubiF 2-octaprenyl-3-m 97.1 0.0045 9.8E-08 63.2 11.2 33 245-280 6-38 (391)
379 PRK11728 hydroxyglutarate oxid 97.1 0.0054 1.2E-07 62.7 11.7 32 246-280 4-37 (393)
380 PRK08641 sdhA succinate dehydr 97.0 0.0006 1.3E-08 73.3 4.8 58 392-450 354-411 (589)
381 TIGR01790 carotene-cycl lycope 97.0 0.0052 1.1E-07 62.7 11.0 32 246-280 1-32 (388)
382 COG0493 GltD NADPH-dependent g 97.0 0.0015 3.2E-08 67.4 6.8 66 244-312 123-197 (457)
383 PRK07045 putative monooxygenas 97.0 0.0066 1.4E-07 62.0 11.7 35 245-282 6-40 (388)
384 PRK08243 4-hydroxybenzoate 3-m 97.0 0.0065 1.4E-07 62.1 11.6 34 245-281 3-36 (392)
385 PRK05257 malate:quinone oxidor 97.0 0.00084 1.8E-08 70.4 5.1 39 78-120 4-42 (494)
386 PRK08849 2-octaprenyl-3-methyl 97.0 0.0064 1.4E-07 62.0 11.4 32 246-280 5-36 (384)
387 PLN02464 glycerol-3-phosphate 97.0 0.00091 2E-08 72.4 5.2 36 78-119 70-105 (627)
388 COG0579 Predicted dehydrogenas 97.0 0.0072 1.6E-07 61.5 11.2 38 245-283 4-41 (429)
389 PF06100 Strep_67kDa_ant: Stre 97.0 0.0043 9.3E-08 63.4 9.5 39 79-119 2-40 (500)
390 PLN02697 lycopene epsilon cycl 96.9 0.0055 1.2E-07 64.7 10.5 96 245-373 109-248 (529)
391 KOG2614 Kynurenine 3-monooxyge 96.9 0.0011 2.4E-08 65.6 4.7 35 79-119 2-36 (420)
392 PRK07538 hypothetical protein; 96.9 0.0091 2E-07 61.5 11.8 33 246-281 2-34 (413)
393 PRK07494 2-octaprenyl-6-methox 96.9 0.0068 1.5E-07 61.8 10.8 34 245-281 8-41 (388)
394 COG0644 FixC Dehydrogenases (f 96.9 0.0077 1.7E-07 61.6 11.0 96 246-372 5-151 (396)
395 COG2072 TrkA Predicted flavopr 96.9 0.02 4.4E-07 59.3 14.1 140 245-419 9-187 (443)
396 TIGR01789 lycopene_cycl lycope 96.9 0.0058 1.3E-07 61.9 10.0 35 246-283 1-37 (370)
397 PRK12834 putative FAD-binding 96.9 0.0012 2.5E-08 70.6 5.1 35 78-118 3-37 (549)
398 PLN03000 amine oxidase 96.9 0.0014 3.1E-08 71.9 5.8 41 78-124 183-223 (881)
399 PRK05732 2-octaprenyl-6-methox 96.9 0.0089 1.9E-07 61.0 11.4 32 245-279 4-38 (395)
400 PRK12837 3-ketosteroid-delta-1 96.9 0.0011 2.3E-08 70.3 4.7 34 79-119 7-40 (513)
401 PF00732 GMC_oxred_N: GMC oxid 96.9 0.001 2.3E-08 65.1 4.3 37 80-121 1-37 (296)
402 KOG2404 Fumarate reductase, fl 96.9 0.0035 7.6E-08 59.8 7.4 32 81-118 11-42 (477)
403 PRK08850 2-octaprenyl-6-methox 96.9 0.0081 1.8E-07 61.7 11.0 32 245-279 5-36 (405)
404 COG1251 NirB NAD(P)H-nitrite r 96.8 0.0083 1.8E-07 63.6 10.8 104 245-379 4-119 (793)
405 PF01946 Thi4: Thi4 family; PD 96.8 0.026 5.6E-07 51.5 12.5 107 245-374 18-166 (230)
406 PRK07057 sdhA succinate dehydr 96.8 0.0012 2.6E-08 71.1 4.7 34 79-118 12-45 (591)
407 TIGR03219 salicylate_mono sali 96.8 0.011 2.4E-07 60.9 11.8 34 246-282 2-36 (414)
408 TIGR02028 ChlP geranylgeranyl 96.8 0.013 2.8E-07 60.0 12.1 32 246-280 2-33 (398)
409 PRK05192 tRNA uridine 5-carbox 96.8 0.0069 1.5E-07 64.3 10.1 31 246-279 6-36 (618)
410 PRK06567 putative bifunctional 96.8 0.0034 7.4E-08 69.6 8.0 35 242-279 381-415 (1028)
411 TIGR02023 BchP-ChlP geranylger 96.8 0.012 2.5E-07 60.2 11.7 31 246-279 2-32 (388)
412 PRK06854 adenylylsulfate reduc 96.8 0.0012 2.6E-08 71.3 4.5 45 400-451 389-433 (608)
413 TIGR01377 soxA_mon sarcosine o 96.8 0.012 2.6E-07 59.8 11.6 32 246-280 2-33 (380)
414 PF13454 NAD_binding_9: FAD-NA 96.8 0.014 3.1E-07 51.2 10.5 33 248-280 1-35 (156)
415 KOG2311 NAD/FAD-utilizing prot 96.8 0.0024 5.2E-08 64.0 6.0 45 400-453 381-425 (679)
416 PRK06185 hypothetical protein; 96.8 0.012 2.6E-07 60.4 11.6 34 244-280 6-39 (407)
417 PRK12835 3-ketosteroid-delta-1 96.8 0.0018 4E-08 69.5 5.5 36 78-119 10-45 (584)
418 PF12831 FAD_oxidored: FAD dep 96.8 0.0013 2.9E-08 68.0 4.3 98 246-371 1-148 (428)
419 PRK12845 3-ketosteroid-delta-1 96.7 0.0025 5.5E-08 68.1 6.0 39 77-122 14-52 (564)
420 PTZ00139 Succinate dehydrogena 96.7 0.0016 3.4E-08 70.5 4.5 35 79-119 29-63 (617)
421 PRK09078 sdhA succinate dehydr 96.7 0.0016 3.4E-08 70.3 4.5 34 79-118 12-45 (598)
422 PF04820 Trp_halogenase: Trypt 96.7 0.012 2.6E-07 61.3 10.8 35 246-280 1-35 (454)
423 PRK12839 hypothetical protein; 96.7 0.0024 5.2E-08 68.4 5.8 38 77-120 6-43 (572)
424 COG0562 Glf UDP-galactopyranos 96.7 0.0024 5.2E-08 61.0 5.0 37 79-121 1-37 (374)
425 KOG1298 Squalene monooxygenase 96.7 0.0066 1.4E-07 59.4 7.9 36 77-118 43-78 (509)
426 KOG0404 Thioredoxin reductase 96.7 0.01 2.3E-07 53.8 8.6 101 244-378 8-129 (322)
427 PLN00128 Succinate dehydrogena 96.7 0.0017 3.7E-08 70.2 4.5 34 79-118 50-83 (635)
428 KOG1399 Flavin-containing mono 96.7 0.013 2.8E-07 60.3 10.5 140 244-418 6-197 (448)
429 TIGR02061 aprA adenosine phosp 96.7 0.0018 3.9E-08 69.6 4.5 45 400-451 400-444 (614)
430 PRK11445 putative oxidoreducta 96.6 0.022 4.7E-07 57.3 12.1 32 246-281 3-34 (351)
431 PRK08958 sdhA succinate dehydr 96.6 0.0019 4.1E-08 69.5 4.5 34 79-118 7-40 (588)
432 PRK12409 D-amino acid dehydrog 96.6 0.019 4.2E-07 59.0 11.6 33 245-280 2-34 (410)
433 PRK12844 3-ketosteroid-delta-1 96.6 0.0025 5.3E-08 68.2 4.9 35 79-119 6-40 (557)
434 COG3573 Predicted oxidoreducta 96.6 0.015 3.3E-07 55.9 9.4 35 78-118 4-38 (552)
435 PF05834 Lycopene_cycl: Lycope 96.5 0.016 3.4E-07 58.9 10.2 98 246-374 1-143 (374)
436 PRK08626 fumarate reductase fl 96.5 0.0024 5.1E-08 69.5 4.4 59 393-451 372-431 (657)
437 KOG2665 Predicted FAD-dependen 96.5 0.0063 1.4E-07 58.0 6.4 38 77-118 46-83 (453)
438 PLN02815 L-aspartate oxidase 96.5 0.0034 7.4E-08 67.4 5.4 56 393-449 377-433 (594)
439 PLN02976 amine oxidase 96.5 0.0033 7.1E-08 71.8 5.2 40 77-122 691-730 (1713)
440 TIGR01470 cysG_Nterm siroheme 96.5 0.0088 1.9E-07 55.1 7.2 35 78-118 8-42 (205)
441 PRK07395 L-aspartate oxidase; 96.5 0.0029 6.4E-08 67.5 4.5 54 393-447 347-401 (553)
442 PRK01747 mnmC bifunctional tRN 96.4 0.015 3.3E-07 63.7 10.1 33 245-280 261-293 (662)
443 PRK14106 murD UDP-N-acetylmura 96.4 0.0062 1.3E-07 63.5 6.7 35 78-118 4-38 (450)
444 PLN00093 geranylgeranyl diphos 96.4 0.034 7.4E-07 57.8 12.1 33 245-280 40-72 (450)
445 TIGR02462 pyranose_ox pyranose 96.4 0.0034 7.4E-08 66.2 4.7 36 80-121 1-36 (544)
446 COG1148 HdrA Heterodisulfide r 96.4 0.0073 1.6E-07 60.9 6.6 73 243-318 123-208 (622)
447 PRK11259 solA N-methyltryptoph 96.4 0.029 6.3E-07 56.8 11.3 32 246-280 5-36 (376)
448 TIGR01811 sdhA_Bsu succinate d 96.4 0.0027 5.8E-08 68.5 3.7 56 393-449 370-425 (603)
449 TIGR01989 COQ6 Ubiquinone bios 96.4 0.026 5.7E-07 58.6 11.0 31 246-279 2-36 (437)
450 PRK11101 glpA sn-glycerol-3-ph 96.3 0.03 6.6E-07 59.8 11.5 33 245-280 7-39 (546)
451 COG0578 GlpA Glycerol-3-phosph 96.3 0.0047 1E-07 64.2 5.0 37 78-120 11-47 (532)
452 PRK02106 choline dehydrogenase 96.3 0.0047 1E-07 66.2 5.2 37 78-119 4-40 (560)
453 TIGR02360 pbenz_hydroxyl 4-hyd 96.3 0.037 8E-07 56.5 11.5 34 245-281 3-36 (390)
454 PTZ00306 NADH-dependent fumara 96.3 0.0048 1E-07 71.6 5.4 39 77-121 407-445 (1167)
455 PRK06481 fumarate reductase fl 96.3 0.032 7E-07 59.0 11.1 33 246-281 63-95 (506)
456 TIGR00136 gidA glucose-inhibit 96.2 0.03 6.6E-07 59.5 10.6 31 246-279 2-32 (617)
457 PF13434 K_oxygenase: L-lysine 96.2 0.0057 1.2E-07 61.1 4.9 39 77-119 188-226 (341)
458 PRK02705 murD UDP-N-acetylmura 96.2 0.018 3.9E-07 60.2 8.5 33 81-119 2-34 (459)
459 KOG2960 Protein involved in th 96.1 0.0022 4.9E-08 57.4 0.9 36 80-119 77-112 (328)
460 PRK08294 phenol 2-monooxygenas 96.0 0.064 1.4E-06 58.4 11.7 33 246-281 34-67 (634)
461 COG4529 Uncharacterized protei 95.8 0.078 1.7E-06 54.0 10.8 39 245-283 2-40 (474)
462 KOG3923 D-aspartate oxidase [A 95.8 0.023 5.1E-07 53.8 6.4 41 78-118 2-43 (342)
463 PRK12266 glpD glycerol-3-phosp 95.7 0.07 1.5E-06 56.5 10.5 33 245-280 7-39 (508)
464 TIGR03329 Phn_aa_oxid putative 95.6 0.098 2.1E-06 54.7 11.3 31 246-279 26-58 (460)
465 TIGR01810 betA choline dehydro 95.6 0.012 2.6E-07 62.8 4.3 33 81-119 1-34 (532)
466 PRK08274 tricarballylate dehyd 95.5 0.12 2.7E-06 54.1 11.6 32 246-280 6-37 (466)
467 PF00890 FAD_binding_2: FAD bi 95.4 0.087 1.9E-06 54.3 9.9 32 247-281 2-33 (417)
468 PLN02927 antheraxanthin epoxid 95.4 0.11 2.4E-06 56.3 10.8 34 244-280 81-114 (668)
469 PRK13369 glycerol-3-phosphate 95.4 0.13 2.8E-06 54.5 11.4 32 246-280 8-39 (502)
470 COG2303 BetA Choline dehydroge 95.4 0.018 4E-07 61.2 4.9 37 77-119 5-41 (542)
471 TIGR03364 HpnW_proposed FAD de 95.4 0.11 2.4E-06 52.4 10.5 32 246-280 2-33 (365)
472 COG3634 AhpF Alkyl hydroperoxi 95.4 0.042 9E-07 53.3 6.5 103 244-372 211-324 (520)
473 TIGR01813 flavo_cyto_c flavocy 95.4 0.13 2.7E-06 53.5 10.9 32 246-280 1-33 (439)
474 COG0445 GidA Flavin-dependent 95.3 0.024 5.3E-07 58.3 5.1 31 245-278 5-35 (621)
475 PLN02985 squalene monooxygenas 95.3 0.15 3.3E-06 53.9 11.4 34 244-280 43-76 (514)
476 PF01210 NAD_Gly3P_dh_N: NAD-d 95.3 0.026 5.6E-07 49.6 4.7 32 81-118 1-32 (157)
477 KOG2844 Dimethylglycine dehydr 95.3 0.053 1.2E-06 56.9 7.4 36 76-117 36-72 (856)
478 COG3380 Predicted NAD/FAD-depe 95.1 0.075 1.6E-06 50.0 7.1 35 246-283 3-37 (331)
479 PRK07121 hypothetical protein; 95.0 0.17 3.7E-06 53.4 10.9 32 246-280 22-53 (492)
480 TIGR01470 cysG_Nterm siroheme 95.0 0.053 1.2E-06 49.9 6.1 33 244-279 9-41 (205)
481 KOG0405 Pyridine nucleotide-di 95.0 0.045 9.6E-07 53.1 5.6 104 77-207 187-291 (478)
482 PLN02785 Protein HOTHEAD 95.0 0.032 7E-07 59.9 5.2 36 77-119 53-88 (587)
483 PF13241 NAD_binding_7: Putati 94.9 0.034 7.4E-07 45.0 4.1 34 78-117 6-39 (103)
484 PRK08401 L-aspartate oxidase; 94.9 0.19 4E-06 52.7 10.5 33 245-280 2-34 (466)
485 PRK08255 salicylyl-CoA 5-hydro 94.8 0.081 1.8E-06 58.9 8.1 34 246-282 2-37 (765)
486 PRK14106 murD UDP-N-acetylmura 94.6 0.077 1.7E-06 55.3 6.8 55 244-308 5-59 (450)
487 KOG3851 Sulfide:quinone oxidor 94.6 0.038 8.3E-07 52.9 4.0 102 245-380 40-152 (446)
488 KOG2755 Oxidoreductase [Genera 94.6 0.066 1.4E-06 50.0 5.3 93 247-374 2-105 (334)
489 PRK06719 precorrin-2 dehydroge 94.5 0.068 1.5E-06 46.9 5.1 35 77-117 11-45 (157)
490 PRK06718 precorrin-2 dehydroge 94.4 0.096 2.1E-06 48.1 6.3 71 243-370 9-79 (202)
491 COG0569 TrkA K+ transport syst 94.4 0.049 1.1E-06 50.9 4.3 34 80-119 1-34 (225)
492 PF13450 NAD_binding_8: NAD(P) 94.3 0.061 1.3E-06 39.8 3.7 32 249-283 1-32 (68)
493 PRK07573 sdhA succinate dehydr 94.3 0.34 7.4E-06 52.8 11.0 30 246-278 37-66 (640)
494 COG1206 Gid NAD(FAD)-utilizing 94.2 0.044 9.6E-07 52.8 3.5 47 398-453 325-371 (439)
495 PF02737 3HCDH_N: 3-hydroxyacy 94.2 0.059 1.3E-06 48.5 4.2 33 81-119 1-33 (180)
496 KOG2311 NAD/FAD-utilizing prot 94.2 0.14 3E-06 51.8 7.0 30 246-278 30-59 (679)
497 PF03721 UDPG_MGDP_dh_N: UDP-g 94.0 0.065 1.4E-06 48.4 4.0 34 80-119 1-34 (185)
498 PRK01710 murD UDP-N-acetylmura 93.9 0.16 3.4E-06 53.2 7.4 34 79-118 14-47 (458)
499 TIGR00551 nadB L-aspartate oxi 93.9 0.41 8.9E-06 50.4 10.6 30 246-279 4-33 (488)
500 KOG1238 Glucose dehydrogenase/ 93.9 0.066 1.4E-06 56.4 4.4 40 76-120 54-93 (623)
No 1
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=5.9e-54 Score=423.37 Aligned_cols=360 Identities=36% Similarity=0.566 Sum_probs=321.9
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCC-cEEEE
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTG-VQFFK 156 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-v~~~~ 156 (500)
++++|||||||++||.+|..|.+.. ++.+||+||+++++.++|+++.+..|..+..++..+++..+++.+ ++|++
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~----~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~ 77 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKL----PDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQ 77 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcC----CCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEE
Confidence 4589999999999999999999942 268999999999999999999999999999999999999998555 99999
Q ss_pred eeEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCCCCCCCCCccccccCCCChHHHHHHHHHHH-HHH
Q 010827 157 DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLS-ELE 235 (500)
Q Consensus 157 ~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p~~~~i~G~~~~~~~~~~~~~~~~~~~~l~-~~~ 235 (500)
++|+.||.+.+ +|++.++..+.||+||+|+|+.+..+.+||..++.+.+.+.+|+.+++..+. .++
T Consensus 78 ~~V~~ID~~~k-------------~V~~~~~~~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe 144 (405)
T COG1252 78 GEVTDIDRDAK-------------KVTLADLGEISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFE 144 (405)
T ss_pred EEEEEEcccCC-------------EEEeCCCccccccEEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999988 6888887789999999999999999999999999999999999999988775 333
Q ss_pred HhccCCC--CccEEEEECCChhHHHHHHHHHHHHhh-----c-----CeEEEEecCCccCCCCCcchHHHHHHHHHhCCc
Q 010827 236 RRNFGKD--SLIRVAVVGCGYSGVELAATVSERLEE-----K-----GIVQAINVETTICPTGTPGNREAALKVLSARKV 303 (500)
Q Consensus 236 ~~~~~~~--~~k~V~VvGgG~~g~e~A~~l~~~~~~-----~-----~~vtlv~~~~~~~~~~~~~~~~~~~~~l~~~gV 303 (500)
......+ .-.+|+|+|||++|+|+|.+|+++..+ . -+|++|++.+.+++.+++.+++..++.|++.||
T Consensus 145 ~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV 224 (405)
T COG1252 145 KASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGV 224 (405)
T ss_pred HhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHCCC
Confidence 3321111 234799999999999999999988763 1 149999999999999999999999999999999
Q ss_pred EEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCcc-EEeecEEEEecCCCCCCCCCCCCC
Q 010827 304 QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQ-IFEADLVLWTVGSKPLLPHVEPPN 382 (500)
Q Consensus 304 ~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~-~l~~D~vi~a~G~~p~~~~~~~~~ 382 (500)
++++++.|++++. +.|++. ++. ++++|++||++|.+++ ++.+.+
T Consensus 225 ~v~l~~~Vt~v~~-------------------------~~v~~~--------~g~~~I~~~tvvWaaGv~a~-~~~~~l- 269 (405)
T COG1252 225 EVLLGTPVTEVTP-------------------------DGVTLK--------DGEEEIPADTVVWAAGVRAS-PLLKDL- 269 (405)
T ss_pred EEEcCCceEEECC-------------------------CcEEEc--------cCCeeEecCEEEEcCCCcCC-hhhhhc-
Confidence 9999999999999 677776 444 6999999999999998 676653
Q ss_pred CccCCCCCCCCCceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHCCCCCCCceecCc
Q 010827 383 NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNL 462 (500)
Q Consensus 383 ~~~~~~~~~~~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~~~p~~~~~~ 462 (500)
.+++.+..|++.||+++|++++|+||++|||+...++ +++|.+++.|.+||..+|+||.+.+.++++.||+|+..
T Consensus 270 ---~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~--~p~P~tAQ~A~Qqg~~~a~ni~~~l~g~~l~~f~y~~~ 344 (405)
T COG1252 270 ---SGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDP--RPVPPTAQAAHQQGEYAAKNIKARLKGKPLKPFKYKDK 344 (405)
T ss_pred ---ChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCC--CCCCChhHHHHHHHHHHHHHHHHHhcCCCCCCCcccce
Confidence 1467788999999999999999999999999998765 78899999999999999999999999999999999999
Q ss_pred eeEEEecCCCeeecCCccCceEEechhhHHhhhhh
Q 010827 463 GEMMILGRNDAAVSPSFVEGVTLDGPIGHSGKVLR 497 (500)
Q Consensus 463 ~~~~~~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 497 (500)
|.++++|.+.|++. ++++.+.|++++++|+.+
T Consensus 345 Gtl~~lG~~~av~~---~g~~~l~G~~a~~~k~~~ 376 (405)
T COG1252 345 GTLASLGDFSAVAD---LGGVKLKGFLAWLLKRAA 376 (405)
T ss_pred EEEEEccCCceeEE---ecceeeccHHHHHHHHHH
Confidence 99999999999998 567999999999999865
No 2
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=6.3e-49 Score=403.66 Aligned_cols=357 Identities=26% Similarity=0.408 Sum_probs=304.5
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEE
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFK 156 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~ 156 (500)
..+++|||||||+||+.+|..|.+ .+++|||||+++++.|.++++.+..|..+...+..+++..++..+++++.
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~------~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~ 81 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDP------KKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLR 81 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCc------CCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEE
Confidence 455899999999999999999865 57899999999999999999998888888888888888888888999999
Q ss_pred eeEEEEecCCCCCCCCCceeecCcEEEc----------CCccEEEecEEEEeCCCCCCCCCCCCccccccCCCChHHHHH
Q 010827 157 DRVKLLCPSDHLGVNGPMACTHGGTVLL----------ESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACR 226 (500)
Q Consensus 157 ~~v~~i~~~~~~~~~~~~~~~~~~~v~~----------~~g~~~~~d~lIlAtG~~p~~~~i~G~~~~~~~~~~~~~~~~ 226 (500)
++|+.||++.+ .+.+ +++..+.||+||||||+.+..+.+||..++.+.+++.+++..
T Consensus 82 ~~V~~Id~~~~-------------~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~ipG~~e~~~~~~~~~~a~~ 148 (424)
T PTZ00318 82 AVVYDVDFEEK-------------RVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARG 148 (424)
T ss_pred EEEEEEEcCCC-------------EEEEecccccccccCCceEecCCEEEECCCcccCCCCCCCHHHcCCCCCCHHHHHH
Confidence 99999998876 3444 456689999999999999999999999888888899999988
Q ss_pred HHHHHHHH-HHhccC------CCCccEEEEECCChhHHHHHHHHHHHHhh-----------cCeEEEEecCCccCCCCCc
Q 010827 227 VDRKLSEL-ERRNFG------KDSLIRVAVVGCGYSGVELAATVSERLEE-----------KGIVQAINVETTICPTGTP 288 (500)
Q Consensus 227 ~~~~l~~~-~~~~~~------~~~~k~V~VvGgG~~g~e~A~~l~~~~~~-----------~~~vtlv~~~~~~~~~~~~ 288 (500)
+++.+.+. +..... ....++|+|||||.+|+|+|..|+++..+ ...|+++++.+.+++.+++
T Consensus 149 ~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~ 228 (424)
T PTZ00318 149 IRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQ 228 (424)
T ss_pred HHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccCCH
Confidence 87766432 211100 01135999999999999999999876432 2349999999999999999
Q ss_pred chHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccEEeecEEEEe
Q 010827 289 GNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWT 368 (500)
Q Consensus 289 ~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a 368 (500)
.+.+.+++.|++.||++++++.|+++.. +.++++ +++++++|.+||+
T Consensus 229 ~~~~~~~~~L~~~gV~v~~~~~v~~v~~-------------------------~~v~~~--------~g~~i~~d~vi~~ 275 (424)
T PTZ00318 229 ALRKYGQRRLRRLGVDIRTKTAVKEVLD-------------------------KEVVLK--------DGEVIPTGLVVWS 275 (424)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeEEEEeC-------------------------CEEEEC--------CCCEEEccEEEEc
Confidence 9999999999999999999999999976 556554 6779999999999
Q ss_pred cCCCCCCCCCCCCCCccCCCCCCCCCceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 010827 369 VGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAA 448 (500)
Q Consensus 369 ~G~~p~~~~~~~~~~~~~~~~~~~~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 448 (500)
+|.+|+ +++..++ ++++++|+|.||+++|++++|||||+|||+..+ ..+.++++..|++||..+|+||.+.
T Consensus 276 ~G~~~~-~~~~~~~-----l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~~---~~~~~~~~~~A~~qg~~~A~ni~~~ 346 (424)
T PTZ00318 276 TGVGPG-PLTKQLK-----VDKTSRGRISVDDHLRVKPIPNVFALGDCAANE---ERPLPTLAQVASQQGVYLAKEFNNE 346 (424)
T ss_pred cCCCCc-chhhhcC-----CcccCCCcEEeCCCcccCCCCCEEEEeccccCC---CCCCCCchHHHHHHHHHHHHHHHHH
Confidence 999998 6766543 677888999999999976999999999999863 2345788999999999999999999
Q ss_pred HCCCC-CCCceecCceeEEEecCCCeeecCCccCceEEechhhHHhhhhh
Q 010827 449 INDRP-LLPFRFQNLGEMMILGRNDAAVSPSFVEGVTLDGPIGHSGKVLR 497 (500)
Q Consensus 449 l~~~~-~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 497 (500)
+.+++ +.||.+...|.++++|.++|+.. ++++.+.|+++|++|+.+
T Consensus 347 l~g~~~~~~~~~~~~g~~~~lG~~~av~~---~~~~~~~g~~a~~~~~~~ 393 (424)
T PTZ00318 347 LKGKPMSKPFVYRSLGSLAYLGNYSAIVQ---LGAFDLSGFKALLFWRSA 393 (424)
T ss_pred hcCCCCCCCCeecCCceEEEecCCceEEE---cCCceEecHHHHHHHHHH
Confidence 99885 89999999999999999999998 568999999999999864
No 3
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=100.00 E-value=2.3e-46 Score=378.56 Aligned_cols=354 Identities=27% Similarity=0.372 Sum_probs=294.9
Q ss_pred eEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEEeeEE
Q 010827 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVK 160 (500)
Q Consensus 81 ~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~v~ 160 (500)
+|||||||+||+.+|..|++.. .++++|+|||+++++.+.+.++.++.|.....++..++.+++++.+++++.++|+
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~---~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~v~ 77 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKP---LPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIAEAT 77 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcC---CCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEEEEE
Confidence 5999999999999999997642 2689999999999999988887777777777778888888888889999999999
Q ss_pred EEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCCCCCCCCCccccccCCCChHHHHHHHHHHHHHHHhccC
Q 010827 161 LLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFG 240 (500)
Q Consensus 161 ~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p~~~~i~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 240 (500)
.+|++.+ .+.+++++.+.||+||||||+.|..|.+||..++++.+++.+++......+..... .
T Consensus 78 ~id~~~~-------------~V~~~~g~~~~yD~LviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 141 (364)
T TIGR03169 78 GIDPDRR-------------KVLLANRPPLSYDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLARWEALLESAD---A 141 (364)
T ss_pred EEecccC-------------EEEECCCCcccccEEEEccCCCCCCCCCCcccccccccCCHHHHHHHHHHHHHHHh---c
Confidence 9998876 58888888899999999999999999999987777777888887775444322110 0
Q ss_pred CCCccEEEEECCChhHHHHHHHHHHHHhhcC---eEEEEecCCccCCCCCcchHHHHHHHHHhCCcEEEcCceEEEEecC
Q 010827 241 KDSLIRVAVVGCGYSGVELAATVSERLEEKG---IVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRV 317 (500)
Q Consensus 241 ~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~---~vtlv~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~ 317 (500)
...+++|+|||||.+|+|+|..|++.+.+.+ .|+++ ..+.+++.+++.....+++.|++.||++++++.+++++.
T Consensus 142 ~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~- 219 (364)
T TIGR03169 142 PPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPD- 219 (364)
T ss_pred CCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeeEEEcC-
Confidence 1125799999999999999999998765432 49999 557777778888899999999999999999999999865
Q ss_pred ccccccccCCCCCcccccccccCCcceeEeecccccCCCccEEeecEEEEecCCCCCCCCCCCCCCccCCCCCCCCCceE
Q 010827 318 GEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAE 397 (500)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~~~~g~i~ 397 (500)
+.+.+. +++++++|.||+|+|.+|+ +++..+ ++.++++|++.
T Consensus 220 ------------------------~~v~~~--------~g~~i~~D~vi~a~G~~p~-~~l~~~-----gl~~~~~g~i~ 261 (364)
T TIGR03169 220 ------------------------GALILA--------DGRTLPADAILWATGARAP-PWLAES-----GLPLDEDGFLR 261 (364)
T ss_pred ------------------------CeEEeC--------CCCEEecCEEEEccCCChh-hHHHHc-----CCCcCCCCeEE
Confidence 445443 6678999999999999998 455443 36678889999
Q ss_pred eCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHCCCCCCCceec-CceeEEEecCCCeeec
Q 010827 398 TDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQ-NLGEMMILGRNDAAVS 476 (500)
Q Consensus 398 vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~~~p~~~~-~~~~~~~~G~~~~~~~ 476 (500)
||+++|+.+.|+||++|||+..++ .+.++.+..|+.||+.+|+||.+.+.++++.+|++. ..++++++|+++|++.
T Consensus 262 vd~~l~~~~~~~Iya~GD~~~~~~---~~~~~~~~~A~~~g~~~a~ni~~~l~g~~~~~~~~~~~~~~~~~~G~~~~v~~ 338 (364)
T TIGR03169 262 VDPTLQSLSHPHVFAAGDCAVITD---APRPKAGVYAVRQAPILAANLRASLRGQPLRPFRPQRDYLQLLNTGDRRAVAS 338 (364)
T ss_pred ECCccccCCCCCEEEeeeeeecCC---CCCCCchHHHHHhHHHHHHHHHHHhcCCCCCCCcccccceeEEEcCCCcEEEe
Confidence 999999878999999999997632 234677889999999999999999999999999874 5689999999999886
Q ss_pred CCccCceEEechhhHHhhhhhcC
Q 010827 477 PSFVEGVTLDGPIGHSGKVLRRG 499 (500)
Q Consensus 477 ~~~~~~~~~~g~~~~~~~~~~~~ 499 (500)
.+++.+.|+++|++|+.+++
T Consensus 339 ---~~~~~~~~~~~~~~k~~~~~ 358 (364)
T TIGR03169 339 ---WGWIIGPGRWLWRLKDWIDR 358 (364)
T ss_pred ---ecceeecCccHHHHHHHHhH
Confidence 55899999999999998763
No 4
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=100.00 E-value=8.6e-40 Score=333.59 Aligned_cols=323 Identities=22% Similarity=0.278 Sum_probs=250.8
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCccc-Ccch-hhhccccccCccccccHHHHhccCCcEEEE
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF-KPML-YELLSGEVDAWEIAPRFADLLANTGVQFFK 156 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~-~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~ 156 (500)
.++|||||||+||++||..|++.+ ...+|+|++++++++| ++.+ ..++.+.... .......+++.+.+++++.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~----~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~ 77 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQG----FTGELHLFSDERHLPYERPPLSKSMLLEDSPQ-LQQVLPANWWQENNVHLHS 77 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhC----CCCCEEEeCCCCCCCCCCCCCCHHHHCCCCcc-ccccCCHHHHHHCCCEEEc
Confidence 468999999999999999999953 4558999999988777 3333 3344433211 1111123555677999998
Q ss_pred e-eEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCCCCCCCCCc-cccccCCCChHHHHHHHHHHHHH
Q 010827 157 D-RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGA-AEFAFPFSTLEDACRVDRKLSEL 234 (500)
Q Consensus 157 ~-~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p~~~~i~G~-~~~~~~~~~~~~~~~~~~~l~~~ 234 (500)
+ .|..++...+ .+.++++..+.||+||||||++|+.+++++. .++++.+.+.+++..++..+..
T Consensus 78 g~~V~~id~~~~-------------~v~~~~g~~~~yd~LViATGs~~~~~p~~~~~~~~v~~~~~~~da~~l~~~~~~- 143 (396)
T PRK09754 78 GVTIKTLGRDTR-------------ELVLTNGESWHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLREVLQP- 143 (396)
T ss_pred CCEEEEEECCCC-------------EEEECCCCEEEcCEEEEccCCCCCCCCCCCcCCCCEEecCCHHHHHHHHHHhhc-
Confidence 7 7889988765 5777788899999999999999987776654 3556667778888777765432
Q ss_pred HHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCC-CCcchHHHHHHHHHhCCcEEEcCceEEE
Q 010827 235 ERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPT-GTPGNREAALKVLSARKVQLVLGYFVRC 313 (500)
Q Consensus 235 ~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~-~~~~~~~~~~~~l~~~gV~i~~~~~v~~ 313 (500)
+++|+|||+|.+|+|+|..|++.+.+ ||++++.+.+++. +++...+.+.+.+++.||++++++.+++
T Consensus 144 ---------~~~vvViGgG~ig~E~A~~l~~~g~~---Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~ 211 (396)
T PRK09754 144 ---------ERSVVIVGAGTIGLELAASATQRRCK---VTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEH 211 (396)
T ss_pred ---------CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEE
Confidence 68999999999999999999988776 9999999888765 5677888899999999999999999999
Q ss_pred EecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccEEeecEEEEecCCCCCCCCCCCCCCccCCCCCCCC
Q 010827 314 IRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNAR 393 (500)
Q Consensus 314 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~~~~ 393 (500)
++. + +.+.+.+. +++++++|.||+++|.+|+..+++..+ ++. +
T Consensus 212 i~~-~-----------------------~~~~v~l~------~g~~i~aD~Vv~a~G~~pn~~l~~~~g-----l~~--~ 254 (396)
T PRK09754 212 VVD-G-----------------------EKVELTLQ------SGETLQADVVIYGIGISANDQLAREAN-----LDT--A 254 (396)
T ss_pred EEc-C-----------------------CEEEEEEC------CCCEEECCEEEECCCCChhhHHHHhcC-----CCc--C
Confidence 976 2 33444442 567899999999999999987765543 443 4
Q ss_pred CceEeCCCcccCCCCCEEEecccccccCCCCCC-CCchHHHHHHHHHHHHHHHHHHHCCCCCCCceecC-ce-eEEEecC
Q 010827 394 GQAETDETLCVKGHPRIFALGDSSALRDSSGRP-LPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQN-LG-EMMILGR 470 (500)
Q Consensus 394 g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~-~~~~~~~A~~~g~~aa~~i~~~l~~~~~~p~~~~~-~~-~~~~~G~ 470 (500)
+.|.||+++|| +.|+|||+|||+..+++.|.. ...++..|..||+.+|+||.+.....+..||.|.. ++ .+..+|.
T Consensus 255 ~gi~vd~~~~t-s~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~g~~~~~~~~p~~~~~~~~~~~~~~G~ 333 (396)
T PRK09754 255 NGIVIDEACRT-CDPAIFAGGDVAITRLDNGALHRCESWENANNQAQIAAAAMLGLPLPLLPPPWFWSDQYSDNLQFIGD 333 (396)
T ss_pred CCEEECCCCcc-CCCCEEEccceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhcCCCCCCCCCCceEEEeCCccEEEeeC
Confidence 56999999999 999999999999865543332 35678999999999999998766666777888876 44 4666663
No 5
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=100.00 E-value=6.5e-40 Score=314.06 Aligned_cols=367 Identities=26% Similarity=0.380 Sum_probs=300.5
Q ss_pred CCCCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccC--Cc
Q 010827 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANT--GV 152 (500)
Q Consensus 75 ~~~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~v 152 (500)
....+++|||+|+|.+|.+.+..|-. .-++|++|++.++|.+.|+++...-|..+...+..+.+.+..+. ++
T Consensus 51 ~~~kKk~vVVLGsGW~a~S~lk~ldt------s~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~ 124 (491)
T KOG2495|consen 51 NGGKKKRVVVLGSGWGAISLLKKLDT------SLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEV 124 (491)
T ss_pred CCCCCceEEEEcCchHHHHHHHhccc------cccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCc
Confidence 34667999999999999999999977 67899999999999999999999999999999999999888766 68
Q ss_pred EEEEeeEEEEecCCCCCCCCCceeecCcEEEcCCc----cEEEecEEEEeCCCCCCCCCCCCccccccCCCChHHHHHHH
Q 010827 153 QFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG----LIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVD 228 (500)
Q Consensus 153 ~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g----~~~~~d~lIlAtG~~p~~~~i~G~~~~~~~~~~~~~~~~~~ 228 (500)
.+++++...+|++.+. ++. +..++++ ..+.||+||+|+|+.+..+.+||..++.+.+....|+.+++
T Consensus 125 ~y~eAec~~iDp~~k~------V~~---~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgipGV~e~~~FLKEv~dAqeIR 195 (491)
T KOG2495|consen 125 KYLEAECTKIDPDNKK------VHC---RSLTADSSDKEFVIGYDYLVIAVGAEPNTFGIPGVEENAHFLKEVEDAQEIR 195 (491)
T ss_pred eEEecccEeecccccE------EEE---eeeccCCCcceeeecccEEEEeccCCCCCCCCCchhhchhhhhhhhHHHHHH
Confidence 8999999999998774 111 1222333 47899999999999999999999999988899999999987
Q ss_pred HHH-HHHHHhccC------CCCccEEEEECCChhHHHHHHHHHHHHhh-----------cCeEEEEecCCccCCCCCcch
Q 010827 229 RKL-SELERRNFG------KDSLIRVAVVGCGYSGVELAATVSERLEE-----------KGIVQAINVETTICPTGTPGN 290 (500)
Q Consensus 229 ~~l-~~~~~~~~~------~~~~k~V~VvGgG~~g~e~A~~l~~~~~~-----------~~~vtlv~~~~~~~~~~~~~~ 290 (500)
..+ ..++..... ..+--+++|||||++|+|+|.+|+....+ .-+||+++..+.+++.|+..+
T Consensus 196 ~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl 275 (491)
T KOG2495|consen 196 RKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRL 275 (491)
T ss_pred HHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHHHHHHH
Confidence 644 445544432 23346899999999999999999876544 123999999999999999999
Q ss_pred HHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccEEeecEEEEecC
Q 010827 291 REAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG 370 (500)
Q Consensus 291 ~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G 370 (500)
.+..++.+.+.+|++.+++.|+.++. ..+.+... +++-+++++-+++|+||
T Consensus 276 ~~yae~~f~~~~I~~~~~t~Vk~V~~-------------------------~~I~~~~~----~g~~~~iPYG~lVWatG 326 (491)
T KOG2495|consen 276 VEYAENQFVRDGIDLDTGTMVKKVTE-------------------------KTIHAKTK----DGEIEEIPYGLLVWATG 326 (491)
T ss_pred HHHHHHHhhhccceeecccEEEeecC-------------------------cEEEEEcC----CCceeeecceEEEecCC
Confidence 99999999999999999999999988 55666542 23558899999999999
Q ss_pred CCCCCCCCCCCCCccCCCCCCCCC--ceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 010827 371 SKPLLPHVEPPNNRLHDLPLNARG--QAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAA 448 (500)
Q Consensus 371 ~~p~~~~~~~~~~~~~~~~~~~~g--~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 448 (500)
..|. ++...+. -.+++.| .+.||++||.++.+||||+|||+..+ ..+.+++.|.+||.++|+++...
T Consensus 327 ~~~r-p~~k~lm-----~~i~e~~rr~L~vDE~LrV~G~~nvfAiGDca~~~-----~~~~tAQVA~QqG~yLAk~fn~m 395 (491)
T KOG2495|consen 327 NGPR-PVIKDLM-----KQIDEQGRRGLAVDEWLRVKGVKNVFAIGDCADQR-----GLKPTAQVAEQQGAYLAKNFNKM 395 (491)
T ss_pred CCCc-hhhhhHh-----hcCCccCceeeeeeceeeccCcCceEEeccccccc-----cCccHHHHHHHHHHHHHHHHHHH
Confidence 9887 4443322 2234444 89999999999999999999999431 23568999999999999998643
Q ss_pred HC--CC--------------CCCCceecCceeEEEecCCCeeecCCccCc-eEEechhhHHhhhhh
Q 010827 449 IN--DR--------------PLLPFRFQNLGEMMILGRNDAAVSPSFVEG-VTLDGPIGHSGKVLR 497 (500)
Q Consensus 449 l~--~~--------------~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~-~~~~g~~~~~~~~~~ 497 (500)
.. +. .+.||+|.++|.++++|.++++.+++ .+. +.+.|..++|+|+.+
T Consensus 396 ~k~~~~~e~~~~r~~~~~~~~f~PF~Y~H~GalA~lG~ekaiAdl~-~g~~~~~~G~~s~~lWrS~ 460 (491)
T KOG2495|consen 396 GKGGNLPEGPSARLRGEGRHQFKPFKYKHLGALAYLGREKAIADLP-VGKMWVSAGGSSFWLWRSA 460 (491)
T ss_pred hcccCCCccchhhhhhhhhhccCCcccccccceeeccccchhhcCc-cCCeeeeccchhhHHHHHH
Confidence 22 11 24899999999999999999999987 344 678899999999976
No 6
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=2.7e-38 Score=326.19 Aligned_cols=299 Identities=19% Similarity=0.265 Sum_probs=233.8
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCc-chhhhccccccCc-ccc-ccHHHHhccCCcEEEE
Q 010827 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP-MLYELLSGEVDAW-EIA-PRFADLLANTGVQFFK 156 (500)
Q Consensus 80 ~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~-~~~~~~~g~~~~~-~~~-~~~~~~~~~~~v~~~~ 156 (500)
++|||||||+||++||..|+++ .++++|+|||+++++.|.+ .++.+..+..... ... .....+.++.+++++.
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~----~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~ 77 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRL----DKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKT 77 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhh----CCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEe
Confidence 5899999999999999999884 3689999999999888865 4555554433222 222 2224455667999876
Q ss_pred -eeEEEEecCCCCCCCCCceeecCcEEEcCCc---c--EEEecEEEEeCCCCCCCCCCCCccccccCCCChHHHHHHHHH
Q 010827 157 -DRVKLLCPSDHLGVNGPMACTHGGTVLLESG---L--IVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRK 230 (500)
Q Consensus 157 -~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g---~--~~~~d~lIlAtG~~p~~~~i~G~~~~~~~~~~~~~~~~~~~~ 230 (500)
.+|+.||++.+ .+.+.++ . .+.||+||||||++|..|++++ +.++.+.+..+...+.+.
T Consensus 78 ~~~V~~Id~~~~-------------~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~~~~--~~~~~~~~~~~~~~l~~~ 142 (438)
T PRK13512 78 YHEVIAINDERQ-------------TVTVLNRKTNEQFEESYDKLILSPGASANSLGFES--DITFTLRNLEDTDAIDQF 142 (438)
T ss_pred CCEEEEEECCCC-------------EEEEEECCCCcEEeeecCEEEECCCCCCCCCCCCC--CCeEEecCHHHHHHHHHH
Confidence 69999998876 3544332 2 4789999999999998877654 344555667776666655
Q ss_pred HHHHHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCCCCcchHHHHHHHHHhCCcEEEcCce
Q 010827 231 LSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYF 310 (500)
Q Consensus 231 l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~ 310 (500)
+... .+++|+|||+|.+|+|+|..|++.+.+ |+++++.+.+++.+++++.+.+.+.|++.||++++++.
T Consensus 143 l~~~--------~~~~vvViGgG~ig~E~A~~l~~~g~~---Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~~~~~ 211 (438)
T PRK13512 143 IKAN--------QVDKALVVGAGYISLEVLENLYERGLH---PTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEE 211 (438)
T ss_pred Hhhc--------CCCEEEEECCCHHHHHHHHHHHhCCCc---EEEEecccccchhcCHHHHHHHHHHHHhcCCEEEECCe
Confidence 4321 168999999999999999999988776 99999999988888999999999999999999999999
Q ss_pred EEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccEEeecEEEEecCCCCCCCCCCCCCCccCCCCC
Q 010827 311 VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPL 390 (500)
Q Consensus 311 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~ 390 (500)
+++++. ..++++ +++++++|.|++|+|++||.++++.. ++++
T Consensus 212 v~~i~~-------------------------~~v~~~--------~g~~~~~D~vl~a~G~~pn~~~l~~~-----gl~~ 253 (438)
T PRK13512 212 IDAING-------------------------NEVTFK--------SGKVEHYDMIIEGVGTHPNSKFIESS-----NIKL 253 (438)
T ss_pred EEEEeC-------------------------CEEEEC--------CCCEEEeCEEEECcCCCcChHHHHhc-----Cccc
Confidence 999975 445443 45689999999999999998887654 4778
Q ss_pred CCCCceEeCCCcccCCCCCEEEecccccccCC-CCCC-CCchHHHHHHHHHHHHHHHHH
Q 010827 391 NARGQAETDETLCVKGHPRIFALGDSSALRDS-SGRP-LPATAQVAFQQADFAGWNLWA 447 (500)
Q Consensus 391 ~~~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~-~~~~-~~~~~~~A~~~g~~aa~~i~~ 447 (500)
+++|+|.||+++|| +.|+|||+|||+...+. .+.+ .+.....|.++|+.+|+||.+
T Consensus 254 ~~~G~i~Vd~~~~t-~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~g 311 (438)
T PRK13512 254 DDKGFIPVNDKFET-NVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIAG 311 (438)
T ss_pred CCCCcEEECCCccc-CCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhcC
Confidence 88899999999998 99999999999974322 1221 246677899999999999975
No 7
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=100.00 E-value=1.1e-37 Score=316.25 Aligned_cols=321 Identities=21% Similarity=0.276 Sum_probs=245.8
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCccc-CcchhhhccccccCccccc-cHHHHhccCCcEEEE
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF-KPMLYELLSGEVDAWEIAP-RFADLLANTGVQFFK 156 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~-~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~v~~~~ 156 (500)
+++|||||||+||+++|..|++. ++..+|+||++++.++| .+.+...+.+.....++.. ...+++++++++++.
T Consensus 2 ~~~vvIiG~G~AG~~~a~~lr~~----~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~ 77 (377)
T PRK04965 2 SNGIVIIGSGFAARQLVKNIRKQ----DAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFP 77 (377)
T ss_pred CCCEEEECCcHHHHHHHHHHHhh----CcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEEC
Confidence 36899999999999999999885 36789999999987665 5666555555555555443 456777788999987
Q ss_pred e-eEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCCCCCCCCCccccccCCCChHHHHHHHHHHHHHH
Q 010827 157 D-RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELE 235 (500)
Q Consensus 157 ~-~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p~~~~i~G~~~~~~~~~~~~~~~~~~~~l~~~~ 235 (500)
+ +|+.++++.+ .+.+ ++..+.||+||||||+.|..|++||.+. ++.+.+..++..+...+..
T Consensus 78 ~~~V~~id~~~~-------------~v~~-~~~~~~yd~LVlATG~~~~~p~i~G~~~-v~~~~~~~~~~~~~~~~~~-- 140 (377)
T PRK04965 78 HTWVTDIDAEAQ-------------VVKS-QGNQWQYDKLVLATGASAFVPPIPGREL-MLTLNSQQEYRAAETQLRD-- 140 (377)
T ss_pred CCEEEEEECCCC-------------EEEE-CCeEEeCCEEEECCCCCCCCCCCCCCce-EEEECCHHHHHHHHHHhhc--
Confidence 5 8999988765 4555 4568999999999999999999999754 5555666666655544322
Q ss_pred HhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCC-CCcchHHHHHHHHHhCCcEEEcCceEEEE
Q 010827 236 RRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPT-GTPGNREAALKVLSARKVQLVLGYFVRCI 314 (500)
Q Consensus 236 ~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~-~~~~~~~~~~~~l~~~gV~i~~~~~v~~i 314 (500)
+++|+|||+|++|+|+|..|++.+.+ |+++++.+.+++. +++.....+++.+++.||++++++.++++
T Consensus 141 --------~~~vvViGgG~~g~e~A~~L~~~g~~---Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i 209 (377)
T PRK04965 141 --------AQRVLVVGGGLIGTELAMDLCRAGKA---VTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGL 209 (377)
T ss_pred --------CCeEEEECCCHHHHHHHHHHHhcCCe---EEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEE
Confidence 67999999999999999999987766 9999999888766 46778888999999999999999999999
Q ss_pred ecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccEEeecEEEEecCCCCCCCCCCCCCCccCCCCCCCCC
Q 010827 315 RRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARG 394 (500)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~~~~g 394 (500)
..++ +.+.+.+. +++++++|.||+|+|.+|+.++++..+ ++.+ +|
T Consensus 210 ~~~~-----------------------~~~~v~~~------~g~~i~~D~vI~a~G~~p~~~l~~~~g-----l~~~-~g 254 (377)
T PRK04965 210 EKTD-----------------------SGIRATLD------SGRSIEVDAVIAAAGLRPNTALARRAG-----LAVN-RG 254 (377)
T ss_pred EccC-----------------------CEEEEEEc------CCcEEECCEEEECcCCCcchHHHHHCC-----CCcC-CC
Confidence 8754 34444432 677899999999999999988776544 5554 34
Q ss_pred ceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHCCCCCCC--ceecCce-eEEEecCC
Q 010827 395 QAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLP--FRFQNLG-EMMILGRN 471 (500)
Q Consensus 395 ~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~~~p--~~~~~~~-~~~~~G~~ 471 (500)
+.||+++|| +.|+|||+|||+... +.. ...+..|..||+.+|+||.+.-......+ .....++ .++++|..
T Consensus 255 -i~vd~~l~t-s~~~VyA~GD~a~~~---~~~-~~~~~~a~~~g~~~a~n~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~ 328 (377)
T PRK04965 255 -IVVDSYLQT-SAPDIYALGDCAEIN---GQV-LPFLQPIQLSAMALAKNLLGQNTPLKLPAMLVKVKTPELPLQLAGET 328 (377)
T ss_pred -EEECCCccc-CCCCEEEeeecEeEC---Cce-eehHHHHHHHHHHHHHHhcCCCcccccCCccEEEecCceeeEECCCC
Confidence 999999999 899999999999863 222 23567789999999999986433222111 1222344 57788864
Q ss_pred C
Q 010827 472 D 472 (500)
Q Consensus 472 ~ 472 (500)
.
T Consensus 329 ~ 329 (377)
T PRK04965 329 Q 329 (377)
T ss_pred C
Confidence 3
No 8
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=8.1e-38 Score=341.38 Aligned_cols=304 Identities=18% Similarity=0.242 Sum_probs=247.7
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCc-chhhhccccccCccccccHHHHhccCCcEEEEe
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP-MLYELLSGEVDAWEIAPRFADLLANTGVQFFKD 157 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (500)
+++|||||+|+||+.+|..|++... ..+++||||+++++++|.. .+..++.+ ....++......++++.+++++.+
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~--~~~~~Itvi~~e~~~~Y~r~~L~~~~~~-~~~~~l~~~~~~~~~~~gI~~~~g 79 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKAD--AANFDITVFCEEPRIAYDRVHLSSYFSH-HTAEELSLVREGFYEKHGIKVLVG 79 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCC--CCCCeEEEEECCCCCcccCCcchHhHcC-CCHHHccCCCHHHHHhCCCEEEcC
Confidence 4689999999999999999987431 2578999999999988755 45555544 344555555667788889999987
Q ss_pred -eEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCCCCCCCCCccc-cccCCCChHHHHHHHHHHHHHH
Q 010827 158 -RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAE-FAFPFSTLEDACRVDRKLSELE 235 (500)
Q Consensus 158 -~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p~~~~i~G~~~-~~~~~~~~~~~~~~~~~l~~~~ 235 (500)
.|+.++.+.+ .+.+.++..+.||+||||||+.|+.|++||.+. .++.+++.+++..+...+..
T Consensus 80 ~~V~~Id~~~~-------------~V~~~~G~~i~yD~LVIATGs~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~~~~-- 144 (847)
T PRK14989 80 ERAITINRQEK-------------VIHSSAGRTVFYDKLIMATGSYPWIPPIKGSETQDCFVYRTIEDLNAIEACARR-- 144 (847)
T ss_pred CEEEEEeCCCc-------------EEEECCCcEEECCEEEECCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHHHhc--
Confidence 6999988765 577778888999999999999999999999753 45666788888877665432
Q ss_pred HhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCC-CCCcchHHHHHHHHHhCCcEEEcCceEEEE
Q 010827 236 RRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICP-TGTPGNREAALKVLSARKVQLVLGYFVRCI 314 (500)
Q Consensus 236 ~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~-~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i 314 (500)
+++++|||||.+|+|+|..|++.+.+ |+++++.+.+++ .+++.....+.+.|++.||+++++..+++|
T Consensus 145 --------~k~vvVIGgG~iGlE~A~~L~~~G~~---VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I 213 (847)
T PRK14989 145 --------SKRGAVVGGGLLGLEAAGALKNLGVE---THVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEI 213 (847)
T ss_pred --------CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEE
Confidence 68999999999999999999998877 999999998876 578889999999999999999999999999
Q ss_pred ecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccEEeecEEEEecCCCCCCCCCCCCCCccCCCCCCCCC
Q 010827 315 RRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARG 394 (500)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~~~~g 394 (500)
..++.. ....+.+. +++++++|.||+++|.+|+.++++.. +++++++|
T Consensus 214 ~~~~~~---------------------~~~~v~~~------dG~~i~~D~Vv~A~G~rPn~~L~~~~-----Gl~~~~~G 261 (847)
T PRK14989 214 VQEGVE---------------------ARKTMRFA------DGSELEVDFIVFSTGIRPQDKLATQC-----GLAVAPRG 261 (847)
T ss_pred EecCCC---------------------ceEEEEEC------CCCEEEcCEEEECCCcccCchHHhhc-----CccCCCCC
Confidence 764310 22233332 67889999999999999998877654 47888899
Q ss_pred ceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 010827 395 QAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAA 448 (500)
Q Consensus 395 ~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 448 (500)
+|.||+++|| +.|+|||+|||+...+ ....++..|..+|+.+|.+|.+.
T Consensus 262 ~I~VD~~l~T-s~p~IYAiGD~a~~~~----~~~gl~~~a~~~a~vaa~~i~g~ 310 (847)
T PRK14989 262 GIVINDSCQT-SDPDIYAIGECASWNN----RVFGLVAPGYKMAQVAVDHLLGS 310 (847)
T ss_pred cEEECCCCcC-CCCCEEEeecceeEcC----cccccHHHHHHHHHHHHHHhcCC
Confidence 9999999999 9999999999998632 12347788999999999999753
No 9
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=1.9e-37 Score=320.94 Aligned_cols=287 Identities=21% Similarity=0.283 Sum_probs=220.9
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhh---------------c-----cc------
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYEL---------------L-----SG------ 132 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~---------------~-----~g------ 132 (500)
.+||+||||||||++||..+++ .|++|+|+|+. .++........ + .|
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~------~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~ 74 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAAN------HGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKA 74 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHh------CCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCC
Confidence 4899999999999999999999 79999999985 33222110000 0 00
Q ss_pred cccC-----------ccccccHHHHhccCCcEEEEeeEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCC
Q 010827 133 EVDA-----------WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201 (500)
Q Consensus 133 ~~~~-----------~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~ 201 (500)
..+. ..+...++..+++.+++++.+++..+++... .+. .++..+.||+||||||+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v-------------~v~-~~g~~~~~d~lIiATGs 140 (446)
T TIGR01424 75 RFDWKKLLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTV-------------EVL-QDGTTYTAKKILIAVGG 140 (446)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEE-------------EEe-cCCeEEEcCEEEEecCC
Confidence 0000 0122334556677899999999888876422 233 34668999999999999
Q ss_pred CCCCCCCCCccccccCCCChHHHHHHHHHHHHHHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCc
Q 010827 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETT 281 (500)
Q Consensus 202 ~p~~~~i~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~ 281 (500)
+|..|++||.+. . .+.+++..+... +++++|||+|.+|+|+|..+++.+.+ |+++++.+.
T Consensus 141 ~p~~p~i~G~~~-~---~~~~~~~~l~~~-------------~~~vvVIGgG~~g~E~A~~l~~~G~~---Vtli~~~~~ 200 (446)
T TIGR01424 141 RPQKPNLPGHEL-G---ITSNEAFHLPTL-------------PKSILILGGGYIAVEFAGIWRGLGVQ---VTLIYRGEL 200 (446)
T ss_pred cCCCCCCCCccc-e---echHHhhccccc-------------CCeEEEECCcHHHHHHHHHHHHcCCe---EEEEEeCCC
Confidence 999999998642 1 233343332221 68999999999999999999988776 999999999
Q ss_pred cCCCCCcchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccEEe
Q 010827 282 ICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 361 (500)
Q Consensus 282 ~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~ 361 (500)
+++.++++..+.+++.|++.||++++++.+++++..+ +++.+.+. ++++++
T Consensus 201 ~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~-----------------------~~~~v~~~------~g~~i~ 251 (446)
T TIGR01424 201 ILRGFDDDMRALLARNMEGRGIRIHPQTSLTSITKTD-----------------------DGLKVTLS------HGEEIV 251 (446)
T ss_pred CCcccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcC-----------------------CeEEEEEc------CCcEee
Confidence 9888899999999999999999999999999997643 34445432 567899
Q ss_pred ecEEEEecCCCCCCCCCCCCCCccCCCCCCCCCceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHH
Q 010827 362 ADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFA 441 (500)
Q Consensus 362 ~D~vi~a~G~~p~~~~~~~~~~~~~~~~~~~~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~a 441 (500)
+|.||+|+|.+|+.+.+... ..+++++++|++.||+++|| +.|+|||+|||+.. +.+...|++||+.+
T Consensus 252 ~D~viva~G~~pn~~~l~l~---~~g~~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~--------~~l~~~A~~~g~~~ 319 (446)
T TIGR01424 252 ADVVLFATGRSPNTKGLGLE---AAGVELNDAGAIAVDEYSRT-SIPSIYAVGDVTDR--------INLTPVAIMEATCF 319 (446)
T ss_pred cCEEEEeeCCCcCCCcCCcc---ccCeEECCCCcEEeCCCCcc-CCCCEEEeeccCCC--------ccchhHHHHHHHHH
Confidence 99999999999998764221 23577888999999999999 99999999999975 56888999999999
Q ss_pred HHHHHH
Q 010827 442 GWNLWA 447 (500)
Q Consensus 442 a~~i~~ 447 (500)
|.+|.+
T Consensus 320 a~~i~~ 325 (446)
T TIGR01424 320 ANTEFG 325 (446)
T ss_pred HHHHhc
Confidence 999975
No 10
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=100.00 E-value=1.4e-37 Score=322.74 Aligned_cols=304 Identities=21% Similarity=0.312 Sum_probs=236.6
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCc-chhhhcccccc-CccccccHHHHhccCCcEEEE-
Q 010827 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP-MLYELLSGEVD-AWEIAPRFADLLANTGVQFFK- 156 (500)
Q Consensus 80 ~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~-~~~~~~~g~~~-~~~~~~~~~~~~~~~~v~~~~- 156 (500)
++|||||||+||+++|..|++++ .+++|+|||+++++.|.+ .++.+..+... ..++.....+.+++.+++++.
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~----~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~ 76 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLN----KELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTE 76 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHC----CCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEec
Confidence 37999999999999999999853 568999999999887754 23333333222 223333445566778999876
Q ss_pred eeEEEEecCCCCCCCCCceeecCcEEEcC---CccEEE--ecEEEEeCCCCCCCCCCCCcc-ccccCCCChHHHHHHHHH
Q 010827 157 DRVKLLCPSDHLGVNGPMACTHGGTVLLE---SGLIVE--YDWLVLSLGAEPKLDVVPGAA-EFAFPFSTLEDACRVDRK 230 (500)
Q Consensus 157 ~~v~~i~~~~~~~~~~~~~~~~~~~v~~~---~g~~~~--~d~lIlAtG~~p~~~~i~G~~-~~~~~~~~~~~~~~~~~~ 230 (500)
.+|+.++++.+ .+.+. ++..+. ||+||||||++|..|.+||.+ ++++.+.+.++..++++.
T Consensus 77 ~~V~~id~~~~-------------~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~g~~~~~v~~~~~~~~~~~l~~~ 143 (444)
T PRK09564 77 HEVVKVDAKNK-------------TITVKNLKTGSIFNDTYDKLMIATGARPIIPPIKNINLENVYTLKSMEDGLALKEL 143 (444)
T ss_pred CEEEEEECCCC-------------EEEEEECCCCCEEEecCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHH
Confidence 58999988765 34332 245566 999999999999999999975 456666677777776665
Q ss_pred HHHHHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCC-CCCcchHHHHHHHHHhCCcEEEcCc
Q 010827 231 LSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICP-TGTPGNREAALKVLSARKVQLVLGY 309 (500)
Q Consensus 231 l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~-~~~~~~~~~~~~~l~~~gV~i~~~~ 309 (500)
+... .+++|+|||+|.+|+|+|..+.+.+.+ |+++++.+.+++ .+++++.+.+.+.+++.||++++++
T Consensus 144 l~~~--------~~~~vvVvGgG~~g~e~A~~l~~~g~~---Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~ 212 (444)
T PRK09564 144 LKDE--------EIKNIVIIGAGFIGLEAVEAAKHLGKN---VRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNE 212 (444)
T ss_pred Hhhc--------CCCEEEEECCCHHHHHHHHHHHhcCCc---EEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCC
Confidence 5321 157999999999999999999887766 999999888776 4788899999999999999999999
Q ss_pred eEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccEEeecEEEEecCCCCCCCCCCCCCCccCCCC
Q 010827 310 FVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLP 389 (500)
Q Consensus 310 ~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~p~~~~~~~~~~~~~~~~ 389 (500)
.+++++.++ +...+.. ++.++++|.+|+|+|.+|+.++++..+ ++
T Consensus 213 ~v~~i~~~~-----------------------~~~~v~~-------~~~~i~~d~vi~a~G~~p~~~~l~~~g-----l~ 257 (444)
T PRK09564 213 FVKSLIGED-----------------------KVEGVVT-------DKGEYEADVVIVATGVKPNTEFLEDTG-----LK 257 (444)
T ss_pred EEEEEecCC-----------------------cEEEEEe-------CCCEEEcCEEEECcCCCcCHHHHHhcC-----cc
Confidence 999996532 2222322 344799999999999999988877654 77
Q ss_pred CCCCCceEeCCCcccCCCCCEEEecccccccCC-CCC-CCCchHHHHHHHHHHHHHHHHH
Q 010827 390 LNARGQAETDETLCVKGHPRIFALGDSSALRDS-SGR-PLPATAQVAFQQADFAGWNLWA 447 (500)
Q Consensus 390 ~~~~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~-~~~-~~~~~~~~A~~~g~~aa~~i~~ 447 (500)
++++|+|.||+++|| +.|||||+|||+..++. .++ ..++++..|.+||+.+|.||.+
T Consensus 258 ~~~~g~i~vd~~~~t-~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g 316 (444)
T PRK09564 258 TLKNGAIIVDEYGET-SIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAG 316 (444)
T ss_pred ccCCCCEEECCCccc-CCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhcC
Confidence 778899999999998 99999999999986443 122 2367889999999999999985
No 11
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=2.6e-37 Score=313.07 Aligned_cols=315 Identities=25% Similarity=0.351 Sum_probs=239.0
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCc----------ccCcchhhh-----------cccc---
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF----------VFKPMLYEL-----------LSGE--- 133 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~----------~~~~~~~~~-----------~~g~--- 133 (500)
..+|+||||+||||..||..++++ |.+|.++|+.+.+ +.+.++... ..|.
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~------G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~ 76 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQL------GLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAE 76 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC------CCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecC
Confidence 459999999999999999999994 6679999999522 222111110 0010
Q ss_pred ---ccCcc-----------ccccHHHHhccCCcEEEEeeEEEEecCCCCCCCCCceeecCcEEEcCC--ccEEEecEEEE
Q 010827 134 ---VDAWE-----------IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLES--GLIVEYDWLVL 197 (500)
Q Consensus 134 ---~~~~~-----------~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~--g~~~~~d~lIl 197 (500)
.++.. ....+..+++..+++++.++...+++. ++.... .+.+.++++||
T Consensus 77 ~~~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~---------------~v~V~~~~~~~~~a~~iiI 141 (454)
T COG1249 77 VPKIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPH---------------TVEVTGEDKETITADNIII 141 (454)
T ss_pred CCCcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCC---------------EEEEcCCCceEEEeCEEEE
Confidence 11111 112234556667999999988877633 344433 47899999999
Q ss_pred eCCCCCCCCCCCCccccccCCCChHHHHHHHHHHHHHHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEe
Q 010827 198 SLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAIN 277 (500)
Q Consensus 198 AtG~~p~~~~i~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~ 277 (500)
|||++|..|++++.+... +.+.++...+... |++++|||||.+|+|+|..+++.|.+ ||+++
T Consensus 142 ATGS~p~~~~~~~~~~~~--~~~s~~~l~~~~l-------------P~~lvIiGgG~IGlE~a~~~~~LG~~---VTiie 203 (454)
T COG1249 142 ATGSRPRIPPGPGIDGAR--ILDSSDALFLLEL-------------PKSLVIVGGGYIGLEFASVFAALGSK---VTVVE 203 (454)
T ss_pred cCCCCCcCCCCCCCCCCe--EEechhhcccccC-------------CCEEEEECCCHHHHHHHHHHHHcCCc---EEEEe
Confidence 999999999998876432 3344454444432 89999999999999999999999998 99999
Q ss_pred cCCccCCCCCcchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCc
Q 010827 278 VETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLES 357 (500)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~ 357 (500)
+.+.+++.+++++++.+.+.|++.|+++++++.+++++..+ +++.+.++ .+ ++
T Consensus 204 ~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~-----------------------~~v~v~~~---~g-~~ 256 (454)
T COG1249 204 RGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTAVEKKD-----------------------DGVLVTLE---DG-EG 256 (454)
T ss_pred cCCCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEEEEecC-----------------------CeEEEEEe---cC-CC
Confidence 99999999999999999999999999999999999998865 33666553 11 22
Q ss_pred cEEeecEEEEecCCCCCCCCCCCCCCccCCCCCCCCCceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHH
Q 010827 358 QIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQ 437 (500)
Q Consensus 358 ~~l~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~~~~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~ 437 (500)
.++++|.|++|+|++||++-+.. +..+++++++|+|.||..++| +.|+|||+|||+.. +.+.+.|..|
T Consensus 257 ~~~~ad~vLvAiGR~Pn~~~LgL---e~~Gv~~~~rg~I~VD~~~~T-nvp~IyA~GDV~~~--------~~Lah~A~~e 324 (454)
T COG1249 257 GTIEADAVLVAIGRKPNTDGLGL---ENAGVELDDRGFIKVDDQMTT-NVPGIYAIGDVIGG--------PMLAHVAMAE 324 (454)
T ss_pred CEEEeeEEEEccCCccCCCCCCh---hhcCceECCCCCEEeCCcccc-CCCCEEEeeccCCC--------cccHhHHHHH
Confidence 27899999999999999874432 245799999999999966666 89999999999886 5699999999
Q ss_pred HHHHHHHHHH-HH--CCCCCCCceecCceeEEEecC
Q 010827 438 ADFAGWNLWA-AI--NDRPLLPFRFQNLGEMMILGR 470 (500)
Q Consensus 438 g~~aa~~i~~-~l--~~~~~~p~~~~~~~~~~~~G~ 470 (500)
|+.+|.+|.+ .. .++...|+-.-..+.+.++|-
T Consensus 325 g~iaa~~i~g~~~~~~d~~~iP~~ift~Peia~VGl 360 (454)
T COG1249 325 GRIAAENIAGGKRTPIDYRLIPSVVFTDPEIASVGL 360 (454)
T ss_pred HHHHHHHHhCCCCCcCcccCCCEEEECCCcceeeeC
Confidence 9999999997 11 123455655445557777774
No 12
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=8.4e-37 Score=315.77 Aligned_cols=286 Identities=21% Similarity=0.260 Sum_probs=216.3
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCc----------chhhh-----c-----ccc-----
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP----------MLYEL-----L-----SGE----- 133 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~----------~~~~~-----~-----~g~----- 133 (500)
.+||+||||||||++||..|++ .|++|+|||+.. ++... ++... . .|.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~------~G~~V~liE~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~ 74 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAE------HGAKALLVEAKK-LGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLE 74 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHH------CCCcEEEecccc-cccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCc
Confidence 4899999999999999999999 689999999963 22211 00000 0 000
Q ss_pred --ccCcc-----------ccccHHHHhccCCcEEEEeeEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCC
Q 010827 134 --VDAWE-----------IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200 (500)
Q Consensus 134 --~~~~~-----------~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG 200 (500)
.++.. +...+...+++.+++++.++....+. + ++.. ++..+.||+||||||
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~--~-------------~v~v-~~~~~~~d~vIiAtG 138 (450)
T TIGR01421 75 NTFNWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKD--G-------------TVEV-NGRDYTAPHILIATG 138 (450)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccC--C-------------EEEE-CCEEEEeCEEEEecC
Confidence 11111 11123445666789999987654331 1 3444 345799999999999
Q ss_pred CCCCCC-CCCCccccccCCCChHHHHHHHHHHHHHHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecC
Q 010827 201 AEPKLD-VVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVE 279 (500)
Q Consensus 201 ~~p~~~-~i~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~ 279 (500)
++|..| .+||.+. ..+.++...+... +++|+|||+|.+|+|+|..|++.+.+ ||++++.
T Consensus 139 s~p~~p~~i~g~~~----~~~~~~~~~~~~~-------------~~~vvIIGgG~iG~E~A~~l~~~g~~---Vtli~~~ 198 (450)
T TIGR01421 139 GKPSFPENIPGAEL----GTDSDGFFALEEL-------------PKRVVIVGAGYIAVELAGVLHGLGSE---THLVIRH 198 (450)
T ss_pred CCCCCCCCCCCCce----eEcHHHhhCcccc-------------CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEecC
Confidence 999998 8998641 1233333332221 68999999999999999999998877 9999999
Q ss_pred CccCCCCCcchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCc-c
Q 010827 280 TTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLES-Q 358 (500)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~-~ 358 (500)
+.+++.+++++.+.+++.|++.||++++++.+++++.+.+ +.+.+.+. ++ +
T Consensus 199 ~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~----------------------~~~~v~~~------~g~~ 250 (450)
T TIGR01421 199 ERVLRSFDSMISETITEEYEKEGINVHKLSKPVKVEKTVE----------------------GKLVIHFE------DGKS 250 (450)
T ss_pred CCCCcccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCC----------------------ceEEEEEC------CCcE
Confidence 9999999999999999999999999999999999986431 22444432 33 5
Q ss_pred EEeecEEEEecCCCCCCCCCCCCCCccCCCCCCCCCceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHH
Q 010827 359 IFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQA 438 (500)
Q Consensus 359 ~l~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~~~~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g 438 (500)
.+++|.||+++|++||++++... ..+++++++|++.||+++|| +.|+|||+|||+.. +..+..|.+||
T Consensus 251 ~i~~D~vi~a~G~~pn~~~l~l~---~~g~~~~~~G~i~vd~~~~T-~~p~IyAiGD~~~~--------~~~~~~A~~~g 318 (450)
T TIGR01421 251 IDDVDELIWAIGRKPNTKGLGLE---NVGIKLNEKGQIIVDEYQNT-NVPGIYALGDVVGK--------VELTPVAIAAG 318 (450)
T ss_pred EEEcCEEEEeeCCCcCcccCCcc---ccCcEECCCCcEEeCCCCcC-CCCCEEEEEecCCC--------cccHHHHHHHH
Confidence 79999999999999998864321 23578889999999999999 99999999999975 56788999999
Q ss_pred HHHHHHHHH
Q 010827 439 DFAGWNLWA 447 (500)
Q Consensus 439 ~~aa~~i~~ 447 (500)
+.+|++|.+
T Consensus 319 ~~aa~~i~~ 327 (450)
T TIGR01421 319 RKLSERLFN 327 (450)
T ss_pred HHHHHHHhc
Confidence 999999974
No 13
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=5.2e-37 Score=318.47 Aligned_cols=286 Identities=21% Similarity=0.309 Sum_probs=219.0
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcc----------h---------hhhc--ccc----
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPM----------L---------YELL--SGE---- 133 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~----------~---------~~~~--~g~---- 133 (500)
.+||+||||||||++||..|++ .|++|+|||+. .++.... + ..+. .|.
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~------~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~ 76 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAM------YGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTE 76 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHH------CCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCC
Confidence 4899999999999999999999 68999999986 3222110 0 0000 000
Q ss_pred --ccCcc-----------ccccHHHHhccCCcEEEEeeEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCC
Q 010827 134 --VDAWE-----------IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLG 200 (500)
Q Consensus 134 --~~~~~-----------~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG 200 (500)
.++.. +...+...+++.+++++.+++..++.. +++. ++..+.||+||||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~~---------------~v~~-~g~~~~~d~lViATG 140 (450)
T PRK06116 77 NKFDWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAH---------------TVEV-NGERYTADHILIATG 140 (450)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCC---------------EEEE-CCEEEEeCEEEEecC
Confidence 01111 111233445567999999988877542 4555 566899999999999
Q ss_pred CCCCCCCCCCccccccCCCChHHHHHHHHHHHHHHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCC
Q 010827 201 AEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVET 280 (500)
Q Consensus 201 ~~p~~~~i~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~ 280 (500)
++|..|++||.+. ..+..+...+.. .+++|+|||+|.+|+|+|..|++.+.+ |+++++.+
T Consensus 141 s~p~~p~i~g~~~----~~~~~~~~~~~~-------------~~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~ 200 (450)
T PRK06116 141 GRPSIPDIPGAEY----GITSDGFFALEE-------------LPKRVAVVGAGYIAVEFAGVLNGLGSE---THLFVRGD 200 (450)
T ss_pred CCCCCCCCCCcce----eEchhHhhCccc-------------cCCeEEEECCCHHHHHHHHHHHHcCCe---EEEEecCC
Confidence 9999999998642 122333322221 168999999999999999999988776 99999999
Q ss_pred ccCCCCCcchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccEE
Q 010827 281 TICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIF 360 (500)
Q Consensus 281 ~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l 360 (500)
.+++.+++.+.+.+.+.|++.||++++++.|++++.+++ +.+.+.+. +++++
T Consensus 201 ~~l~~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~----------------------g~~~v~~~------~g~~i 252 (450)
T PRK06116 201 APLRGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNAD----------------------GSLTLTLE------DGETL 252 (450)
T ss_pred CCccccCHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCC----------------------ceEEEEEc------CCcEE
Confidence 888889999999999999999999999999999986431 22555542 55789
Q ss_pred eecEEEEecCCCCCCCCCCCCCCccCCCCCCCCCceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHH
Q 010827 361 EADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADF 440 (500)
Q Consensus 361 ~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~~~~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~ 440 (500)
++|.||+|+|++|+.+.+... ..+++++++|+|.||+++|| ++|+|||+|||+.. +.+...|+.||+.
T Consensus 253 ~~D~Vv~a~G~~p~~~~l~l~---~~g~~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~--------~~~~~~A~~~g~~ 320 (450)
T PRK06116 253 TVDCLIWAIGREPNTDGLGLE---NAGVKLNEKGYIIVDEYQNT-NVPGIYAVGDVTGR--------VELTPVAIAAGRR 320 (450)
T ss_pred EeCEEEEeeCCCcCCCCCCch---hcCceECCCCcEecCCCCCc-CCCCEEEEeecCCC--------cCcHHHHHHHHHH
Confidence 999999999999998864321 23578888999999999999 99999999999875 5688899999999
Q ss_pred HHHHHHH
Q 010827 441 AGWNLWA 447 (500)
Q Consensus 441 aa~~i~~ 447 (500)
+|.+|.+
T Consensus 321 aa~~i~g 327 (450)
T PRK06116 321 LSERLFN 327 (450)
T ss_pred HHHHHhC
Confidence 9999975
No 14
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=100.00 E-value=1.1e-36 Score=333.22 Aligned_cols=296 Identities=18% Similarity=0.283 Sum_probs=244.6
Q ss_pred EEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccC-cchhhhccccccCccccccHHHHhccCCcEEEEe-eE
Q 010827 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFK-PMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD-RV 159 (500)
Q Consensus 82 VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~-~v 159 (500)
|||||||+||+++|..|+++. ..+++|||||++++++|. +.+..++.|....+++.....+++++.+++++.+ +|
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~---~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V 77 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLN---RHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETV 77 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcC---CCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeE
Confidence 699999999999999998853 257899999999998775 4566677776666777777778888889999987 89
Q ss_pred EEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCCCCCCCCCcc-ccccCCCChHHHHHHHHHHHHHHHhc
Q 010827 160 KLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAA-EFAFPFSTLEDACRVDRKLSELERRN 238 (500)
Q Consensus 160 ~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p~~~~i~G~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ 238 (500)
+.+++..+ .+.+.++..+.||+||||||+.|+.|++||.+ +.++.+++.+++..++..+..
T Consensus 78 ~~Id~~~k-------------~V~~~~g~~~~yD~LVlATGs~p~~p~ipG~~~~~v~~~rt~~d~~~i~~~~~~----- 139 (785)
T TIGR02374 78 IQIDTDQK-------------QVITDAGRTLSYDKLILATGSYPFILPIPGADKKGVYVFRTIEDLDAIMAMAQR----- 139 (785)
T ss_pred EEEECCCC-------------EEEECCCcEeeCCEEEECCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHHhhc-----
Confidence 99998765 58888888999999999999999999999975 456667788888777665432
Q ss_pred cCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCC-CCcchHHHHHHHHHhCCcEEEcCceEEEEecC
Q 010827 239 FGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPT-GTPGNREAALKVLSARKVQLVLGYFVRCIRRV 317 (500)
Q Consensus 239 ~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~-~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~ 317 (500)
+++++|||+|.+|+|+|..|++.+.+ |+++++.+.+++. +++.....+.+.|++.||++++++.++++..+
T Consensus 140 -----~k~vvVVGgG~~GlE~A~~L~~~G~~---Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~ 211 (785)
T TIGR02374 140 -----FKKAAVIGGGLLGLEAAVGLQNLGMD---VSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVGA 211 (785)
T ss_pred -----CCeEEEECCCHHHHHHHHHHHhcCCe---EEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEcC
Confidence 68999999999999999999998876 9999998888764 67888888999999999999999999999764
Q ss_pred ccccccccCCCCCcccccccccCCcceeEeecccccCCCccEEeecEEEEecCCCCCCCCCCCCCCccCCCCCCCCCceE
Q 010827 318 GEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAE 397 (500)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~~~~g~i~ 397 (500)
+.. ..+.+. +++++++|.||+++|.+|+.++++..+ ++.+ |.|.
T Consensus 212 ~~~---------------------~~v~~~--------dG~~i~~D~Vi~a~G~~Pn~~la~~~g-----l~~~--ggI~ 255 (785)
T TIGR02374 212 TKA---------------------DRIRFK--------DGSSLEADLIVMAAGIRPNDELAVSAG-----IKVN--RGII 255 (785)
T ss_pred Cce---------------------EEEEEC--------CCCEEEcCEEEECCCCCcCcHHHHhcC-----CccC--CCEE
Confidence 310 233333 677899999999999999988876544 4444 6799
Q ss_pred eCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 010827 398 TDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 447 (500)
Q Consensus 398 vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 447 (500)
||+++|| +.|+|||+|||+...+ .....+..|..||+.+|.||.+
T Consensus 256 Vd~~~~T-s~p~IyA~GD~a~~~~----~~~gl~~~a~~qa~vaA~ni~g 300 (785)
T TIGR02374 256 VNDSMQT-SDPDIYAVGECAEHNG----RVYGLVAPLYEQAKVLADHICG 300 (785)
T ss_pred ECCCccc-CCCCEEEeeecceeCC----cccccHHHHHHHHHHHHHHhcC
Confidence 9999999 9999999999998632 1234677899999999999975
No 15
>PLN02507 glutathione reductase
Probab=100.00 E-value=1.4e-36 Score=316.98 Aligned_cols=291 Identities=19% Similarity=0.227 Sum_probs=223.3
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCC---------CCcccCc----------chhhh-c------
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQS---------ERFVFKP----------MLYEL-L------ 130 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~---------~~~~~~~----------~~~~~-~------ 130 (500)
...+||+||||||+|+.||..+++ .|.+|+|||+. +.++... ++... +
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~------~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~ 96 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSAN------FGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFED 96 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHH------CCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHH
Confidence 345899999999999999999999 68899999962 2222211 11000 0
Q ss_pred ---ccc-------ccCcccc-----------ccHHHHhccCCcEEEEeeEEEEecCCCCCCCCCceeecCcEEEcCCcc-
Q 010827 131 ---SGE-------VDAWEIA-----------PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGL- 188 (500)
Q Consensus 131 ---~g~-------~~~~~~~-----------~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~- 188 (500)
.|. .+...+. ..++..+...+++++.+++..+++... .++..+++
T Consensus 97 ~~~~G~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v-------------~V~~~~g~~ 163 (499)
T PLN02507 97 AKNYGWEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEV-------------EVTQLDGTK 163 (499)
T ss_pred HHhcCcccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEE-------------EEEeCCCcE
Confidence 000 0111111 112334555789999999999887643 56666665
Q ss_pred -EEEecEEEEeCCCCCCCCCCCCccccccCCCChHHHHHHHHHHHHHHHhccCCCCccEEEEECCChhHHHHHHHHHHHH
Q 010827 189 -IVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERL 267 (500)
Q Consensus 189 -~~~~d~lIlAtG~~p~~~~i~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~ 267 (500)
.+.||+||||||++|..|++||.+. ..+.+++..+... +++|+|||+|.+|+|+|..+++.+
T Consensus 164 ~~~~~d~LIIATGs~p~~p~ipG~~~----~~~~~~~~~l~~~-------------~k~vvVIGgG~ig~E~A~~l~~~G 226 (499)
T PLN02507 164 LRYTAKHILIATGSRAQRPNIPGKEL----AITSDEALSLEEL-------------PKRAVVLGGGYIAVEFASIWRGMG 226 (499)
T ss_pred EEEEcCEEEEecCCCCCCCCCCCccc----eechHHhhhhhhc-------------CCeEEEECCcHHHHHHHHHHHHcC
Confidence 5889999999999999999998632 1244554443322 689999999999999999999887
Q ss_pred hhcCeEEEEecCCccCCCCCcchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEe
Q 010827 268 EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILE 347 (500)
Q Consensus 268 ~~~~~vtlv~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~ 347 (500)
.+ |+++++.+.+++.+++++...+.+.|++.||++++++.|++++.++ +++.+.
T Consensus 227 ~~---Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~-----------------------~~~~v~ 280 (499)
T PLN02507 227 AT---VDLFFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTNLTQLTKTE-----------------------GGIKVI 280 (499)
T ss_pred Ce---EEEEEecCCcCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC-----------------------CeEEEE
Confidence 77 9999999988888999999999999999999999999999998643 445555
Q ss_pred ecccccCCCccEEeecEEEEecCCCCCCCCCCCCCCccCCCCCCCCCceEeCCCcccCCCCCEEEecccccccCCCCCCC
Q 010827 348 LQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPL 427 (500)
Q Consensus 348 ~~~~~~~~~~~~l~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~~~~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~ 427 (500)
+. +++++++|.|++++|++|+.+++... ..+++++++|+|.||+++|| +.|||||+|||+..
T Consensus 281 ~~------~g~~i~~D~vl~a~G~~pn~~~l~l~---~~gl~~~~~G~I~Vd~~~~T-s~p~IyAiGDv~~~-------- 342 (499)
T PLN02507 281 TD------HGEEFVADVVLFATGRAPNTKRLNLE---AVGVELDKAGAVKVDEYSRT-NIPSIWAIGDVTNR-------- 342 (499)
T ss_pred EC------CCcEEEcCEEEEeecCCCCCCCCCch---hhCcEECCCCcEecCCCCcC-CCCCEEEeeEcCCC--------
Confidence 32 56789999999999999998874311 23577888999999999999 99999999999975
Q ss_pred CchHHHHHHHHHHHHHHHHH
Q 010827 428 PATAQVAFQQADFAGWNLWA 447 (500)
Q Consensus 428 ~~~~~~A~~~g~~aa~~i~~ 447 (500)
+.+...|..||+.+|.||.+
T Consensus 343 ~~l~~~A~~qg~~aa~ni~g 362 (499)
T PLN02507 343 INLTPVALMEGTCFAKTVFG 362 (499)
T ss_pred CccHHHHHHHHHHHHHHHcC
Confidence 56888999999999999975
No 16
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=1.2e-36 Score=316.73 Aligned_cols=314 Identities=20% Similarity=0.261 Sum_probs=227.0
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhh--------------------hcccc----
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYE--------------------LLSGE---- 133 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~--------------------~~~g~---- 133 (500)
..+||+||||||||++||..|++ .|++|+|||+.. ++....... ...|.
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~------~G~~v~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~ 76 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAG------LGMKVALIERGL-LGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGG 76 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHh------CCCeEEEEecCc-cCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCc
Confidence 45899999999999999999999 689999999864 111110000 00111
Q ss_pred ---ccCcccc-----------ccHHHHhccC-CcEEEEeeEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEe
Q 010827 134 ---VDAWEIA-----------PRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198 (500)
Q Consensus 134 ---~~~~~~~-----------~~~~~~~~~~-~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlA 198 (500)
.+...+. ..+..++++. +++++.++...++. + +++.+ +..+.||+||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~~--~-------------~v~v~-~~~~~~d~lViA 140 (463)
T PRK06370 77 PVSVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFESP--N-------------TVRVG-GETLRAKRIFIN 140 (463)
T ss_pred cCccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEccC--C-------------EEEEC-cEEEEeCEEEEc
Confidence 1111111 2234455665 89999887654432 1 45553 457999999999
Q ss_pred CCCCCCCCCCCCccccccCCCChHHHHHHHHHHHHHHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEec
Q 010827 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINV 278 (500)
Q Consensus 199 tG~~p~~~~i~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~ 278 (500)
||++|..|++||.+.. .+++.++...+... +++|+|||+|.+|+|+|..|++.+.+ |+++++
T Consensus 141 TGs~p~~p~i~G~~~~--~~~~~~~~~~~~~~-------------~~~vvVIGgG~~g~E~A~~l~~~G~~---Vtli~~ 202 (463)
T PRK06370 141 TGARAAIPPIPGLDEV--GYLTNETIFSLDEL-------------PEHLVIIGGGYIGLEFAQMFRRFGSE---VTVIER 202 (463)
T ss_pred CCCCCCCCCCCCCCcC--ceEcchHhhCcccc-------------CCEEEEECCCHHHHHHHHHHHHcCCe---EEEEEc
Confidence 9999999999997532 23344444332211 68999999999999999999988776 999999
Q ss_pred CCccCCCCCcchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCcc
Q 010827 279 ETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQ 358 (500)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~ 358 (500)
.+.+++.++++..+.+.+.|++.||++++++.+.+++.++ +.+.+.+. ..+++.
T Consensus 203 ~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~-----------------------~~~~v~~~---~~~~~~ 256 (463)
T PRK06370 203 GPRLLPREDEDVAAAVREILEREGIDVRLNAECIRVERDG-----------------------DGIAVGLD---CNGGAP 256 (463)
T ss_pred CCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-----------------------CEEEEEEE---eCCCce
Confidence 9999998888899999999999999999999999998754 33333321 112456
Q ss_pred EEeecEEEEecCCCCCCCCCCCCCCccCCCCCCCCCceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHH
Q 010827 359 IFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQA 438 (500)
Q Consensus 359 ~l~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~~~~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g 438 (500)
++++|.||+|+|++|+.+.+... ..+++++++|++.||+++|| +.|+|||+|||+.. +.+...|..||
T Consensus 257 ~i~~D~Vi~A~G~~pn~~~l~l~---~~g~~~~~~G~i~vd~~l~t-~~~~IyAiGD~~~~--------~~~~~~A~~~g 324 (463)
T PRK06370 257 EITGSHILVAVGRVPNTDDLGLE---AAGVETDARGYIKVDDQLRT-TNPGIYAAGDCNGR--------GAFTHTAYNDA 324 (463)
T ss_pred EEEeCEEEECcCCCcCCCCcCch---hhCceECCCCcEeECcCCcC-CCCCEEEeeecCCC--------cccHHHHHHHH
Confidence 79999999999999998743111 23578888999999999999 99999999999876 67888999999
Q ss_pred HHHHHHHHHHHCC---CCCCCceecCceeEEEecC
Q 010827 439 DFAGWNLWAAIND---RPLLPFRFQNLGEMMILGR 470 (500)
Q Consensus 439 ~~aa~~i~~~l~~---~~~~p~~~~~~~~~~~~G~ 470 (500)
+.+|.||.+.... ....|+..-..+.+.++|-
T Consensus 325 ~~aa~ni~~~~~~~~~~~~~p~~~~~~p~ia~vG~ 359 (463)
T PRK06370 325 RIVAANLLDGGRRKVSDRIVPYATYTDPPLARVGM 359 (463)
T ss_pred HHHHHHHhCCCCCCcccccCCeEEEcCCCcEeeeC
Confidence 9999999753111 1233433222335666664
No 17
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=2.6e-36 Score=314.57 Aligned_cols=292 Identities=16% Similarity=0.173 Sum_probs=222.7
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhcc---------------------c----
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLS---------------------G---- 132 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~---------------------g---- 132 (500)
..+||+||||||||++||.+|++ .|++|+|||+.+.++.........+ +
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~------~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~ 77 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAK------LGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVK 77 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHh------CCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCc
Confidence 45899999999999999999999 6899999999754433211000000 0
Q ss_pred -cccCccc-----------cccHHHHhccCCcEEEEeeEEEEecCCCCCCCCCceeecCcEEEcCCcc--EEEecEEEEe
Q 010827 133 -EVDAWEI-----------APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGL--IVEYDWLVLS 198 (500)
Q Consensus 133 -~~~~~~~-----------~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~--~~~~d~lIlA 198 (500)
..+...+ ...+..++++.+++++.+++..++.... .+...++. .+.||+||||
T Consensus 78 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~-------------~v~~~~g~~~~~~~d~lviA 144 (461)
T PRK05249 78 LRITFADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPHTV-------------EVECPDGEVETLTADKIVIA 144 (461)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCEE-------------EEEeCCCceEEEEcCEEEEc
Confidence 0001111 1123344566789999998877765422 45555553 7999999999
Q ss_pred CCCCCCCCCCCCccccccCCCChHHHHHHHHHHHHHHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEec
Q 010827 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINV 278 (500)
Q Consensus 199 tG~~p~~~~i~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~ 278 (500)
||++|..|++++... ..+.+.++...+... +++|+|||+|.+|+|+|..+++.+.+ |+++++
T Consensus 145 TGs~p~~p~~~~~~~--~~v~~~~~~~~~~~~-------------~~~v~IiGgG~~g~E~A~~l~~~g~~---Vtli~~ 206 (461)
T PRK05249 145 TGSRPYRPPDVDFDH--PRIYDSDSILSLDHL-------------PRSLIIYGAGVIGCEYASIFAALGVK---VTLINT 206 (461)
T ss_pred CCCCCCCCCCCCCCC--CeEEcHHHhhchhhc-------------CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEec
Confidence 999999888776432 123344443333221 78999999999999999999998877 999999
Q ss_pred CCccCCCCCcchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCcc
Q 010827 279 ETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQ 358 (500)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~ 358 (500)
.+.+++.+++++.+.+.+.|++.||++++++.+++++.++ +++.+.+. +++
T Consensus 207 ~~~~l~~~d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~-----------------------~~~~v~~~------~g~ 257 (461)
T PRK05249 207 RDRLLSFLDDEISDALSYHLRDSGVTIRHNEEVEKVEGGD-----------------------DGVIVHLK------SGK 257 (461)
T ss_pred CCCcCCcCCHHHHHHHHHHHHHcCCEEEECCEEEEEEEeC-----------------------CeEEEEEC------CCC
Confidence 9999999999999999999999999999999999998644 44555432 456
Q ss_pred EEeecEEEEecCCCCCCCCCCCCCCccCCCCCCCCCceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHH
Q 010827 359 IFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQA 438 (500)
Q Consensus 359 ~l~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~~~~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g 438 (500)
++++|.||+|+|++|+++++... ..+++++++|++.||+++|| +.|+|||+|||+.. +..+..|+.||
T Consensus 258 ~i~~D~vi~a~G~~p~~~~l~l~---~~g~~~~~~G~i~vd~~~~t-~~~~IyAiGD~~~~--------~~~~~~A~~~g 325 (461)
T PRK05249 258 KIKADCLLYANGRTGNTDGLNLE---NAGLEADSRGQLKVNENYQT-AVPHIYAVGDVIGF--------PSLASASMDQG 325 (461)
T ss_pred EEEeCEEEEeecCCccccCCCch---hhCcEecCCCcEeeCCCccc-CCCCEEEeeecCCC--------cccHhHHHHHH
Confidence 89999999999999998865321 23577888999999999999 99999999999975 67889999999
Q ss_pred HHHHHHHHH
Q 010827 439 DFAGWNLWA 447 (500)
Q Consensus 439 ~~aa~~i~~ 447 (500)
+.+|.+|.+
T Consensus 326 ~~aa~~i~g 334 (461)
T PRK05249 326 RIAAQHAVG 334 (461)
T ss_pred HHHHHHHcC
Confidence 999999974
No 18
>PLN02546 glutathione reductase
Probab=100.00 E-value=2.4e-36 Score=316.70 Aligned_cols=288 Identities=18% Similarity=0.257 Sum_probs=219.3
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCC---------CCc----------ccCcchh-----hhc---
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQS---------ERF----------VFKPMLY-----ELL--- 130 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~---------~~~----------~~~~~~~-----~~~--- 130 (500)
..+||+||||||+|+.||..|++ .|++|+|||+. ..+ +.+.++. ..+
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~------~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~ 151 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASN------FGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEES 151 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH------CCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhh
Confidence 35899999999999999999999 69999999961 111 1111110 000
Q ss_pred --ccc-------ccC-----------ccccccHHHHhccCCcEEEEeeEEEEecCCCCCCCCCceeecCcEEEcCCccEE
Q 010827 131 --SGE-------VDA-----------WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIV 190 (500)
Q Consensus 131 --~g~-------~~~-----------~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~ 190 (500)
.|. .++ ..+...+...+++.+++++.++++.+++. ++.. ++..+
T Consensus 152 ~~~g~~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~---------------~V~v-~G~~~ 215 (558)
T PLN02546 152 RGFGWKYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPH---------------TVDV-DGKLY 215 (558)
T ss_pred hhcCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCC---------------EEEE-CCEEE
Confidence 010 011 11223345666778999999998888764 3444 46689
Q ss_pred EecEEEEeCCCCCCCCCCCCccccccCCCChHHHHHHHHHHHHHHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhc
Q 010827 191 EYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEK 270 (500)
Q Consensus 191 ~~d~lIlAtG~~p~~~~i~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~ 270 (500)
.||+||||||++|..|++||.+. +.+.+++..+... +++|+|||+|.+|+|+|..|++.+.+
T Consensus 216 ~~D~LVIATGs~p~~P~IpG~~~----v~~~~~~l~~~~~-------------~k~V~VIGgG~iGvE~A~~L~~~g~~- 277 (558)
T PLN02546 216 TARNILIAVGGRPFIPDIPGIEH----AIDSDAALDLPSK-------------PEKIAIVGGGYIALEFAGIFNGLKSD- 277 (558)
T ss_pred ECCEEEEeCCCCCCCCCCCChhh----ccCHHHHHhcccc-------------CCeEEEECCCHHHHHHHHHHHhcCCe-
Confidence 99999999999999999999642 2344443333221 68999999999999999999988776
Q ss_pred CeEEEEecCCccCCCCCcchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeecc
Q 010827 271 GIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQP 350 (500)
Q Consensus 271 ~~vtlv~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~ 350 (500)
|+++++.+.+++.+++.....+++.|++.||++++++.+.++....+ +.+.++..
T Consensus 278 --Vtlv~~~~~il~~~d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~----------------------g~v~v~~~- 332 (558)
T PLN02546 278 --VHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSAD----------------------GSLSLKTN- 332 (558)
T ss_pred --EEEEEeccccccccCHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCC----------------------CEEEEEEC-
Confidence 99999999999999999999999999999999999999999975331 33444421
Q ss_pred cccCCCccEEeecEEEEecCCCCCCCCCCCCCCccCCCCCCCCCceEeCCCcccCCCCCEEEecccccccCCCCCCCCch
Q 010827 351 AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPAT 430 (500)
Q Consensus 351 ~~~~~~~~~l~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~~~~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~ 430 (500)
+++...+|.||+++|++|+.+++... ..+++++++|+|.||+++|| +.|+|||+|||+.. +.+
T Consensus 333 -----~g~~~~~D~Viva~G~~Pnt~~L~le---~~gl~~d~~G~I~VD~~l~T-s~p~IYAaGDv~~~--------~~l 395 (558)
T PLN02546 333 -----KGTVEGFSHVMFATGRKPNTKNLGLE---EVGVKMDKNGAIEVDEYSRT-SVPSIWAVGDVTDR--------INL 395 (558)
T ss_pred -----CeEEEecCEEEEeeccccCCCcCChh---hcCCcCCCCCcEeECCCcee-CCCCEEEeeccCCC--------ccc
Confidence 34445589999999999998864211 22578888999999999999 99999999999985 568
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010827 431 AQVAFQQADFAGWNLWA 447 (500)
Q Consensus 431 ~~~A~~~g~~aa~~i~~ 447 (500)
...|..||+.+|.+|.+
T Consensus 396 ~~~A~~~g~~~a~~i~g 412 (558)
T PLN02546 396 TPVALMEGGALAKTLFG 412 (558)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 88999999999999975
No 19
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=2.9e-36 Score=313.53 Aligned_cols=294 Identities=19% Similarity=0.245 Sum_probs=220.0
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCc----------chhh---------hc-cc-----
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP----------MLYE---------LL-SG----- 132 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~----------~~~~---------~~-~g----- 132 (500)
.++||+||||||||++||..|++ .|++|+|||+.+.++... ++.. .. .|
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~------~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~ 76 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAAD------LGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGE 76 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHH------CCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCC
Confidence 35899999999999999999999 689999999876443321 1100 00 00
Q ss_pred -cccCcccc-----------ccHHHHhccCCcEEEEeeEEEEecCCCCCCCCCceeecCcEEEcCCc--cEEEecEEEEe
Q 010827 133 -EVDAWEIA-----------PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG--LIVEYDWLVLS 198 (500)
Q Consensus 133 -~~~~~~~~-----------~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g--~~~~~d~lIlA 198 (500)
..++..+. ..+...++..+++++.+++..++...- .+..+++ ..+.||+||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~~~~v-------------~v~~~~g~~~~~~~d~lViA 143 (471)
T PRK06467 77 PKIDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTL-------------EVTGEDGKTTVIEFDNAIIA 143 (471)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEE-------------EEecCCCceEEEEcCEEEEe
Confidence 00111111 112234556799999998877654321 3444455 47999999999
Q ss_pred CCCCCCC-CCCCCccccccCCCChHHHHHHHHHHHHHHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEe
Q 010827 199 LGAEPKL-DVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAIN 277 (500)
Q Consensus 199 tG~~p~~-~~i~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~ 277 (500)
||++|.. |.+++..+. +.+.+++..+... +++++|||+|.+|+|+|..+++.+.+ ||+++
T Consensus 144 TGs~p~~~p~~~~~~~~---v~~~~~~~~~~~~-------------~~~vvIiGgG~iG~E~A~~l~~~G~~---Vtlv~ 204 (471)
T PRK06467 144 AGSRPIQLPFIPHDDPR---IWDSTDALELKEV-------------PKRLLVMGGGIIGLEMGTVYHRLGSE---VDVVE 204 (471)
T ss_pred CCCCCCCCCCCCCCCCc---EEChHHhhccccC-------------CCeEEEECCCHHHHHHHHHHHHcCCC---EEEEe
Confidence 9999974 556654332 2344555443321 68999999999999999999988877 99999
Q ss_pred cCCccCCCCCcchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCc
Q 010827 278 VETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLES 357 (500)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~ 357 (500)
+.+.+++.+++.+.+.+++.|++. |++++++.+++++..+ +.+.+++.+ ..++.
T Consensus 205 ~~~~il~~~d~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~-----------------------~~~~v~~~~--~~~~~ 258 (471)
T PRK06467 205 MFDQVIPAADKDIVKVFTKRIKKQ-FNIMLETKVTAVEAKE-----------------------DGIYVTMEG--KKAPA 258 (471)
T ss_pred cCCCCCCcCCHHHHHHHHHHHhhc-eEEEcCCEEEEEEEcC-----------------------CEEEEEEEe--CCCcc
Confidence 999999999999999999999988 9999999999998644 445554321 11124
Q ss_pred cEEeecEEEEecCCCCCCCCCCCCCCccCCCCCCCCCceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHH
Q 010827 358 QIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQ 437 (500)
Q Consensus 358 ~~l~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~~~~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~ 437 (500)
+++++|.||+++|++||++++... ..+++++++|+|.||+++|| +.|+|||+|||+.. +.++..|..|
T Consensus 259 ~~i~~D~vi~a~G~~pn~~~l~~~---~~gl~~~~~G~I~Vd~~~~t-~~p~VyAiGDv~~~--------~~la~~A~~e 326 (471)
T PRK06467 259 EPQRYDAVLVAVGRVPNGKLLDAE---KAGVEVDERGFIRVDKQCRT-NVPHIFAIGDIVGQ--------PMLAHKGVHE 326 (471)
T ss_pred eEEEeCEEEEeecccccCCccChh---hcCceECCCCcEeeCCCccc-CCCCEEEehhhcCC--------cccHHHHHHH
Confidence 679999999999999998865432 23688889999999999999 99999999999875 6789999999
Q ss_pred HHHHHHHHHH
Q 010827 438 ADFAGWNLWA 447 (500)
Q Consensus 438 g~~aa~~i~~ 447 (500)
|+.+|.+|.+
T Consensus 327 G~~aa~~i~g 336 (471)
T PRK06467 327 GHVAAEVIAG 336 (471)
T ss_pred HHHHHHHHcC
Confidence 9999999975
No 20
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.9e-36 Score=315.49 Aligned_cols=293 Identities=23% Similarity=0.303 Sum_probs=218.8
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhcc--------------------c-----
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLS--------------------G----- 132 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~--------------------g----- 132 (500)
..+||+||||||||++||..|++ .|++|+|||++. ++.........+ |
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~------~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~ 75 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQ------LGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAEN 75 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHH------CCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCC
Confidence 35899999999999999999999 689999999976 322211100000 0
Q ss_pred -cccCcccc-----------ccHHHHhccCCcEEEEeeEEEEecCCCCCCCCCceeecCcEEEc-CCccEEEecEEEEeC
Q 010827 133 -EVDAWEIA-----------PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLL-ESGLIVEYDWLVLSL 199 (500)
Q Consensus 133 -~~~~~~~~-----------~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~-~~g~~~~~d~lIlAt 199 (500)
..+...+. ..+...+++.+++++.+++..+++... .+.. +++..+.||+|||||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~-------------~v~~~~~~~~~~~d~lViAt 142 (462)
T PRK06416 76 VGIDFKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTV-------------RVMTEDGEQTYTAKNIILAT 142 (462)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEE-------------EEecCCCcEEEEeCEEEEeC
Confidence 00111111 123445667799999998888765432 3432 223689999999999
Q ss_pred CCCCCCCCCCCccccccCCCChHHHHHHHHHHHHHHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecC
Q 010827 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVE 279 (500)
Q Consensus 200 G~~p~~~~i~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~ 279 (500)
|++|..| ||.+.....+++.++...+... +++|+|||+|.+|+|+|..|++.+.+ |+++++.
T Consensus 143 Gs~p~~~--pg~~~~~~~v~~~~~~~~~~~~-------------~~~vvVvGgG~~g~E~A~~l~~~g~~---Vtli~~~ 204 (462)
T PRK06416 143 GSRPREL--PGIEIDGRVIWTSDEALNLDEV-------------PKSLVVIGGGYIGVEFASAYASLGAE---VTIVEAL 204 (462)
T ss_pred CCCCCCC--CCCCCCCCeEEcchHhhCcccc-------------CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEEcC
Confidence 9998654 4543222223455554443321 68999999999999999999988776 9999999
Q ss_pred CccCCCCCcchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccE
Q 010827 280 TTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQI 359 (500)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~ 359 (500)
+.+++.+++...+.+.+.|++.||++++++.|++++.++ +.+.+.+. .+++.++
T Consensus 205 ~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~-----------------------~~v~v~~~---~gg~~~~ 258 (462)
T PRK06416 205 PRILPGEDKEISKLAERALKKRGIKIKTGAKAKKVEQTD-----------------------DGVTVTLE---DGGKEET 258 (462)
T ss_pred CCcCCcCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeC-----------------------CEEEEEEE---eCCeeEE
Confidence 999999999999999999999999999999999998754 44555432 1122367
Q ss_pred EeecEEEEecCCCCCCCCCCCCCCccCCCCCCCCCceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHH
Q 010827 360 FEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQAD 439 (500)
Q Consensus 360 l~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~~~~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~ 439 (500)
+++|.||+|+|.+|+.+++... ..+++++ +|++.||+++|| +.|+|||+|||+.. +.++..|..||+
T Consensus 259 i~~D~vi~a~G~~p~~~~l~l~---~~gl~~~-~g~i~vd~~~~t-~~~~VyAiGD~~~~--------~~~~~~A~~~g~ 325 (462)
T PRK06416 259 LEADYVLVAVGRRPNTENLGLE---ELGVKTD-RGFIEVDEQLRT-NVPNIYAIGDIVGG--------PMLAHKASAEGI 325 (462)
T ss_pred EEeCEEEEeeCCccCCCCCCch---hcCCeec-CCEEeECCCCcc-CCCCEEEeeecCCC--------cchHHHHHHHHH
Confidence 9999999999999998875311 2357777 899999999998 99999999999975 678999999999
Q ss_pred HHHHHHHH
Q 010827 440 FAGWNLWA 447 (500)
Q Consensus 440 ~aa~~i~~ 447 (500)
.+|.||.+
T Consensus 326 ~aa~ni~~ 333 (462)
T PRK06416 326 IAAEAIAG 333 (462)
T ss_pred HHHHHHcC
Confidence 99999985
No 21
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=4.4e-36 Score=310.77 Aligned_cols=291 Identities=17% Similarity=0.231 Sum_probs=219.2
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCC-cccCcchhhhccc---------cccCcc-------ccc
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER-FVFKPMLYELLSG---------EVDAWE-------IAP 141 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~-~~~~~~~~~~~~g---------~~~~~~-------~~~ 141 (500)
.+||+||||||||++||.+|++ .|++|+|||+.+. ++.........+. ..++.. +..
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~------~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~ 76 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAK------AGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVN 76 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHH------CCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999 6899999999753 2222111000000 001000 001
Q ss_pred c-----HHHHhccCCcEEEEeeEEEEecCCCCCCCCCceeecCcEEEcCCcc-EEEecEEEEeCCCCCCCCCCCCccccc
Q 010827 142 R-----FADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGL-IVEYDWLVLSLGAEPKLDVVPGAAEFA 215 (500)
Q Consensus 142 ~-----~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~d~lIlAtG~~p~~~~i~G~~~~~ 215 (500)
. +..+.+..+++++.+++..++.... .+...++. .+.||+||||||++|..|++||.++..
T Consensus 77 ~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~-------------~v~~~~g~~~~~~d~lviATGs~p~~p~i~G~~~~~ 143 (441)
T PRK08010 77 FLRNKNFHNLADMPNIDVIDGQAEFINNHSL-------------RVHRPEGNLEIHGEKIFINTGAQTVVPPIPGITTTP 143 (441)
T ss_pred HHHHhHHHHHhhcCCcEEEEEEEEEecCCEE-------------EEEeCCCeEEEEeCEEEEcCCCcCCCCCCCCccCCC
Confidence 1 1122333489999998888875432 45555664 699999999999999999999975321
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCCCCcchHHHHH
Q 010827 216 FPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAAL 295 (500)
Q Consensus 216 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~~~~~~~~~~~ 295 (500)
.+.+..+...+.. .+++|+|||+|.+|+|+|..|++.+.+ |+++++.+.+++.+++.+.+.+.
T Consensus 144 -~v~~~~~~~~~~~-------------~~~~v~ViGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l~~~~~~~~~~l~ 206 (441)
T PRK08010 144 -GVYDSTGLLNLKE-------------LPGHLGILGGGYIGVEFASMFANFGSK---VTILEAASLFLPREDRDIADNIA 206 (441)
T ss_pred -CEEChhHhhcccc-------------cCCeEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCCCCcCHHHHHHHH
Confidence 1223333322211 168999999999999999999988776 99999999999988888999999
Q ss_pred HHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccEEeecEEEEecCCCCCC
Q 010827 296 KVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLL 375 (500)
Q Consensus 296 ~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~p~~ 375 (500)
+.|++.||++++++.+++++.++ +.+.++. ++.++++|.|++|+|.+||+
T Consensus 207 ~~l~~~gV~v~~~~~v~~i~~~~-----------------------~~v~v~~-------~~g~i~~D~vl~a~G~~pn~ 256 (441)
T PRK08010 207 TILRDQGVDIILNAHVERISHHE-----------------------NQVQVHS-------EHAQLAVDALLIASGRQPAT 256 (441)
T ss_pred HHHHhCCCEEEeCCEEEEEEEcC-----------------------CEEEEEE-------cCCeEEeCEEEEeecCCcCC
Confidence 99999999999999999998654 4455542 22358999999999999998
Q ss_pred CCCCCCCCccCCCCCCCCCceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 010827 376 PHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 447 (500)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 447 (500)
+++... ..+++++++|+|.||+++|| +.|+|||+|||+.. +.....|..+|+.++.+|.+
T Consensus 257 ~~l~~~---~~gl~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~--------~~~~~~a~~~~~~~~~~~~g 316 (441)
T PRK08010 257 ASLHPE---NAGIAVNERGAIVVDKYLHT-TADNIWAMGDVTGG--------LQFTYISLDDYRIVRDELLG 316 (441)
T ss_pred CCcCch---hcCcEECCCCcEEECCCccc-CCCCEEEeeecCCC--------ccchhHHHHHHHHHHHHHcC
Confidence 765322 22577888899999999999 99999999999986 67888999999999999975
No 22
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=2.7e-36 Score=314.31 Aligned_cols=291 Identities=25% Similarity=0.344 Sum_probs=219.5
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcc----------h-----hhhcc----c------cc
Q 010827 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPM----------L-----YELLS----G------EV 134 (500)
Q Consensus 80 ~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~----------~-----~~~~~----g------~~ 134 (500)
+||+||||||||++||..|++ .|++|+|||++. ++.... + ..... | ..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~------~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~ 73 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAE------LGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAV 73 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHH------CCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCcc
Confidence 589999999999999999999 689999999975 222211 0 00000 0 00
Q ss_pred cCc-------ccc-----ccHHHHhccCCcEEEEeeEEEEecCCCCCCCCCceeecCcEEEcCCc-cEEEecEEEEeCCC
Q 010827 135 DAW-------EIA-----PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG-LIVEYDWLVLSLGA 201 (500)
Q Consensus 135 ~~~-------~~~-----~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~d~lIlAtG~ 201 (500)
+.. .+. ..+..++++.+++++.+++..++.. ++..+++ ..+.||+||||||+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~---------------~v~v~~g~~~~~~~~lIiATGs 138 (463)
T TIGR02053 74 DFGELLEGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDPK---------------TVKVDLGREVRGAKRFLIATGA 138 (463)
T ss_pred CHHHHHHHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEccCC---------------EEEEcCCeEEEEeCEEEEcCCC
Confidence 000 010 1134556677999999887765421 4655554 36899999999999
Q ss_pred CCCCCCCCCccccccCCCChHHHHHHHHHHHHHHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCc
Q 010827 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETT 281 (500)
Q Consensus 202 ~p~~~~i~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~ 281 (500)
+|..|++||.+.. .+++..++..+... +++++|||+|.+|+|+|..|++.+.+ |+++++.+.
T Consensus 139 ~p~~p~i~G~~~~--~~~~~~~~~~~~~~-------------~~~vvIIGgG~~g~E~A~~l~~~g~~---Vtli~~~~~ 200 (463)
T TIGR02053 139 RPAIPPIPGLKEA--GYLTSEEALALDRI-------------PESLAVIGGGAIGVELAQAFARLGSE---VTILQRSDR 200 (463)
T ss_pred CCCCCCCCCcccC--ceECchhhhCcccC-------------CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEEcCCc
Confidence 9999999997542 23444443322211 57999999999999999999988877 999999999
Q ss_pred cCCCCCcchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccEEe
Q 010827 282 ICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 361 (500)
Q Consensus 282 ~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~ 361 (500)
+++.++++....+++.|++.||++++++.|++++.++ +.+.+.+. ..+++++++
T Consensus 201 ~l~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~-----------------------~~~~v~~~---~~~~~~~i~ 254 (463)
T TIGR02053 201 LLPREEPEISAAVEEALAEEGIEVVTSAQVKAVSVRG-----------------------GGKIITVE---KPGGQGEVE 254 (463)
T ss_pred CCCccCHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcC-----------------------CEEEEEEE---eCCCceEEE
Confidence 9999999999999999999999999999999998644 33333322 112346899
Q ss_pred ecEEEEecCCCCCCCCCCCCCCccCCCCCCCCCceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHH
Q 010827 362 ADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFA 441 (500)
Q Consensus 362 ~D~vi~a~G~~p~~~~~~~~~~~~~~~~~~~~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~a 441 (500)
+|.||+|+|++|+.+.+... ..+++++++|+|.||+++|| +.|+|||+|||+.. +.++..|..||+.+
T Consensus 255 ~D~ViiA~G~~p~~~~l~l~---~~g~~~~~~G~i~vd~~~~T-s~~~VyAiGD~~~~--------~~~~~~A~~~g~~a 322 (463)
T TIGR02053 255 ADELLVATGRRPNTDGLGLE---KAGVKLDERGGILVDETLRT-SNPGIYAAGDVTGG--------LQLEYVAAKEGVVA 322 (463)
T ss_pred eCEEEEeECCCcCCCCCCcc---ccCCEECCCCcEeECCCccC-CCCCEEEeeecCCC--------cccHhHHHHHHHHH
Confidence 99999999999998733111 23577888999999999999 99999999999986 67889999999999
Q ss_pred HHHHHHH
Q 010827 442 GWNLWAA 448 (500)
Q Consensus 442 a~~i~~~ 448 (500)
|.+|.+.
T Consensus 323 a~ni~~~ 329 (463)
T TIGR02053 323 AENALGG 329 (463)
T ss_pred HHHhcCC
Confidence 9999753
No 23
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.1e-35 Score=308.94 Aligned_cols=318 Identities=22% Similarity=0.264 Sum_probs=220.5
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchh---------------hhccc-------c---
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLY---------------ELLSG-------E--- 133 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~---------------~~~~g-------~--- 133 (500)
.+||+||||||||++||..+++ .|++|+|||+++.++...... ....+ .
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~------~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~ 76 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQ------LGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVK 76 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHh------CCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCcccc
Confidence 4899999999999999999999 689999999854333321110 00000 0
Q ss_pred --ccCccc-----------cccHHHHhccCCcEEEEeeEEEEecCCCCCCCCCceeecCcEEEcCCcc--EEEecEEEEe
Q 010827 134 --VDAWEI-----------APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGL--IVEYDWLVLS 198 (500)
Q Consensus 134 --~~~~~~-----------~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~--~~~~d~lIlA 198 (500)
.++..+ ...+...++..+++++.++. .++...+. .+...++. .+.||+||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a-~~~~~~~v------------~v~~~~g~~~~~~~d~lVIA 143 (466)
T PRK06115 77 PTLNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWG-RLDGVGKV------------VVKAEDGSETQLEAKDIVIA 143 (466)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-EEccCCEE------------EEEcCCCceEEEEeCEEEEe
Confidence 000000 01122334556788888875 33333221 34444553 6999999999
Q ss_pred CCCCCCCCCCCCccccccCCCChHHHHHHHHHHHHHHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEec
Q 010827 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINV 278 (500)
Q Consensus 199 tG~~p~~~~i~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~ 278 (500)
||++|. .+||.......+.+..+...+.. .+++|+|||+|.+|+|+|..+++.+.+ |+++++
T Consensus 144 TGs~p~--~ipg~~~~~~~~~~~~~~~~~~~-------------~~~~vvIIGgG~ig~E~A~~l~~~G~~---Vtlie~ 205 (466)
T PRK06115 144 TGSEPT--PLPGVTIDNQRIIDSTGALSLPE-------------VPKHLVVIGAGVIGLELGSVWRRLGAQ---VTVVEY 205 (466)
T ss_pred CCCCCC--CCCCCCCCCCeEECHHHHhCCcc-------------CCCeEEEECCCHHHHHHHHHHHHcCCe---EEEEeC
Confidence 999885 45665311111233333332211 278999999999999999999988877 999999
Q ss_pred CCccCCCCCcchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCcc
Q 010827 279 ETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQ 358 (500)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~ 358 (500)
.+.+++.++++..+.+++.|++.||++++++.+++++.++ +++.+.+... .+++++
T Consensus 206 ~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~-----------------------~~v~v~~~~~-~~g~~~ 261 (466)
T PRK06115 206 LDRICPGTDTETAKTLQKALTKQGMKFKLGSKVTGATAGA-----------------------DGVSLTLEPA-AGGAAE 261 (466)
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCEEEECcEEEEEEEcC-----------------------CeEEEEEEEc-CCCcee
Confidence 9999999999999999999999999999999999998643 3444443211 112456
Q ss_pred EEeecEEEEecCCCCCCCCCCCCCCccCCCCCCCCCceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHH
Q 010827 359 IFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQA 438 (500)
Q Consensus 359 ~l~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~~~~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g 438 (500)
++++|.||+++|++||++.+... ..+++++.+| +.||+++|| +.|+|||+|||+.. +.+.+.|.+||
T Consensus 262 ~i~~D~vi~a~G~~pn~~~l~~~---~~g~~~~~~G-~~vd~~~~T-s~~~IyA~GD~~~~--------~~la~~A~~~g 328 (466)
T PRK06115 262 TLQADYVLVAIGRRPYTQGLGLE---TVGLETDKRG-MLANDHHRT-SVPGVWVIGDVTSG--------PMLAHKAEDEA 328 (466)
T ss_pred EEEeCEEEEccCCccccccCCcc---cccceeCCCC-EEECCCeec-CCCCEEEeeecCCC--------cccHHHHHHHH
Confidence 89999999999999998765321 2256677667 678999999 99999999999986 67899999999
Q ss_pred HHHHHHHHHHHC--CCCCCCceecCceeEEEecC
Q 010827 439 DFAGWNLWAAIN--DRPLLPFRFQNLGEMMILGR 470 (500)
Q Consensus 439 ~~aa~~i~~~l~--~~~~~p~~~~~~~~~~~~G~ 470 (500)
+.+|.||.+... ..+..|...-..+++.++|-
T Consensus 329 ~~aa~~i~~~~~~~~~~~~p~~~~t~p~ia~vGl 362 (466)
T PRK06115 329 VACIERIAGKAGEVNYGLIPGVIYTRPEVATVGK 362 (466)
T ss_pred HHHHHHHcCCCCCCCCCCCCeEEECCcccEEeeC
Confidence 999999975321 11233433222346666663
No 24
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=2e-35 Score=305.61 Aligned_cols=289 Identities=18% Similarity=0.284 Sum_probs=216.2
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCC-cccCcchhhhcccc---------ccCccc---------
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER-FVFKPMLYELLSGE---------VDAWEI--------- 139 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~-~~~~~~~~~~~~g~---------~~~~~~--------- 139 (500)
.+||+||||||||++||..|++ .|++|+|||+++. ++.........+.. .++..+
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~------~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~ 76 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLAS------AGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTS 76 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHh------CCCEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999 6899999999863 22221111001000 011111
Q ss_pred --cccHHHHhccCCcEEEEeeEEEEecCCCCCCCCCceeecCcEEEcC---CccEEEecEEEEeCCCCCCCCCCCCcccc
Q 010827 140 --APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLE---SGLIVEYDWLVLSLGAEPKLDVVPGAAEF 214 (500)
Q Consensus 140 --~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~---~g~~~~~d~lIlAtG~~p~~~~i~G~~~~ 214 (500)
.....+.+.+.+++++.+++..++. + ++... +...+.||+||||||++|..|++||.++.
T Consensus 77 ~~~~~~~~~~~~~gV~~~~g~~~~~~~--~-------------~v~v~~~~~~~~~~~d~vViATGs~~~~p~i~G~~~~ 141 (438)
T PRK07251 77 RLRGKNYAMLAGSGVDLYDAEAHFVSN--K-------------VIEVQAGDEKIELTAETIVINTGAVSNVLPIPGLADS 141 (438)
T ss_pred HHHHHHHHHHHhCCCEEEEEEEEEccC--C-------------EEEEeeCCCcEEEEcCEEEEeCCCCCCCCCCCCcCCC
Confidence 1112244566789999987765532 1 33332 23479999999999999999999997432
Q ss_pred ccCCCChHHHHHHHHHHHHHHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCCCCcchHHHH
Q 010827 215 AFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAA 294 (500)
Q Consensus 215 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~~~~~~~~~~ 294 (500)
. .+.+..++..+... +++|+|||+|.+|+|+|..+++.+.+ |+++++.+.+++..++...+.+
T Consensus 142 ~-~v~~~~~~~~~~~~-------------~~~vvIIGgG~~g~e~A~~l~~~g~~---Vtli~~~~~~l~~~~~~~~~~~ 204 (438)
T PRK07251 142 K-HVYDSTGIQSLETL-------------PERLGIIGGGNIGLEFAGLYNKLGSK---VTVLDAASTILPREEPSVAALA 204 (438)
T ss_pred C-cEEchHHHhcchhc-------------CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCccCCCCCHHHHHHH
Confidence 1 23344444333211 68999999999999999999987776 9999999999988888888999
Q ss_pred HHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccEEeecEEEEecCCCCC
Q 010827 295 LKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPL 374 (500)
Q Consensus 295 ~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~p~ 374 (500)
.+.|++.||++++++.+++++.++ +.+.+.. ++.++++|.||+|+|.+|+
T Consensus 205 ~~~l~~~GI~i~~~~~V~~i~~~~-----------------------~~v~v~~-------~g~~i~~D~viva~G~~p~ 254 (438)
T PRK07251 205 KQYMEEDGITFLLNAHTTEVKNDG-----------------------DQVLVVT-------EDETYRFDALLYATGRKPN 254 (438)
T ss_pred HHHHHHcCCEEEcCCEEEEEEecC-----------------------CEEEEEE-------CCeEEEcCEEEEeeCCCCC
Confidence 999999999999999999998644 4454442 4568999999999999999
Q ss_pred CCCCCCCCCccCCCCCCCCCceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 010827 375 LPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 447 (500)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 447 (500)
.+.+... ..++.++.+|++.||+++|| +.|+|||+|||+.. +.....|..+|+.++.++.+
T Consensus 255 ~~~l~l~---~~~~~~~~~g~i~vd~~~~t-~~~~IyaiGD~~~~--------~~~~~~a~~~~~~~~~~~~~ 315 (438)
T PRK07251 255 TEPLGLE---NTDIELTERGAIKVDDYCQT-SVPGVFAVGDVNGG--------PQFTYISLDDFRIVFGYLTG 315 (438)
T ss_pred cccCCch---hcCcEECCCCcEEECCCccc-CCCCEEEeeecCCC--------cccHhHHHHHHHHHHHHHcC
Confidence 8765322 12466778899999999999 99999999999975 67888899999999988864
No 25
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=100.00 E-value=2.2e-35 Score=306.77 Aligned_cols=292 Identities=22% Similarity=0.284 Sum_probs=218.9
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC---------CcccCcchhhh----------ccccc-----
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE---------RFVFKPMLYEL----------LSGEV----- 134 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~---------~~~~~~~~~~~----------~~g~~----- 134 (500)
+++|+||||||+|+.||..+++ .|++|+|||++. +.+.+.++... ..|..
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~------~g~~v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~ 74 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQ------LGADVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDG 74 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHh------CCCeEEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCc
Confidence 3689999999999999999999 689999999875 11111111100 00100
Q ss_pred ----cCcc-----------ccccHHHHhccCCcEEEEeeEEEEe--cCCCCCCCCCceeecCcEEEcCCcc--EEEecEE
Q 010827 135 ----DAWE-----------IAPRFADLLANTGVQFFKDRVKLLC--PSDHLGVNGPMACTHGGTVLLESGL--IVEYDWL 195 (500)
Q Consensus 135 ----~~~~-----------~~~~~~~~~~~~~v~~~~~~v~~i~--~~~~~~~~~~~~~~~~~~v~~~~g~--~~~~d~l 195 (500)
++.. ....+.+.+++++++++.+++..++ .+.+. ..+...++. .+.||+|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~-----------v~V~~~~g~~~~~~~d~l 143 (466)
T PRK07845 75 EARVDLPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHR-----------VKVTTADGGEETLDADVV 143 (466)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCE-----------EEEEeCCCceEEEecCEE
Confidence 0000 0123445566779999999888754 22221 145555554 7999999
Q ss_pred EEeCCCCCCCCCCCCcc-ccccCCCChHHHHHHHHHHHHHHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEE
Q 010827 196 VLSLGAEPKLDVVPGAA-EFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQ 274 (500)
Q Consensus 196 IlAtG~~p~~~~i~G~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vt 274 (500)
|||||++|..|++++.. +.+ .+.++...+... +++++|||+|.+|+|+|..|++++.+ |+
T Consensus 144 ViATGs~p~~~p~~~~~~~~v---~~~~~~~~~~~~-------------~~~vvVIGgG~ig~E~A~~l~~~g~~---Vt 204 (466)
T PRK07845 144 LIATGASPRILPTAEPDGERI---LTWRQLYDLDEL-------------PEHLIVVGSGVTGAEFASAYTELGVK---VT 204 (466)
T ss_pred EEcCCCCCCCCCCCCCCCceE---Eeehhhhccccc-------------CCeEEEECCCHHHHHHHHHHHHcCCe---EE
Confidence 99999999876654432 222 233333332221 67999999999999999999988877 99
Q ss_pred EEecCCccCCCCCcchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccC
Q 010827 275 AINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKG 354 (500)
Q Consensus 275 lv~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~ 354 (500)
++++.+.+++.+++.....+.+.|+++||++++++.+.+++.++ +++.+.+.
T Consensus 205 li~~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~-----------------------~~~~v~~~----- 256 (466)
T PRK07845 205 LVSSRDRVLPGEDADAAEVLEEVFARRGMTVLKRSRAESVERTG-----------------------DGVVVTLT----- 256 (466)
T ss_pred EEEcCCcCCCCCCHHHHHHHHHHHHHCCcEEEcCCEEEEEEEeC-----------------------CEEEEEEC-----
Confidence 99999999999999999999999999999999999999997543 44555542
Q ss_pred CCccEEeecEEEEecCCCCCCCCCCCCCCccCCCCCCCCCceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHH
Q 010827 355 LESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVA 434 (500)
Q Consensus 355 ~~~~~l~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~~~~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A 434 (500)
+++++++|.||+++|++|+.+.+... ..+++++++|+|.||+++|| +.|+|||+|||+.. +.++..|
T Consensus 257 -~g~~l~~D~vl~a~G~~pn~~~l~l~---~~gl~~~~~G~i~Vd~~~~T-s~~~IyA~GD~~~~--------~~l~~~A 323 (466)
T PRK07845 257 -DGRTVEGSHALMAVGSVPNTAGLGLE---EAGVELTPSGHITVDRVSRT-SVPGIYAAGDCTGV--------LPLASVA 323 (466)
T ss_pred -CCcEEEecEEEEeecCCcCCCCCCch---hhCceECCCCcEeECCCccc-CCCCEEEEeeccCC--------ccchhHH
Confidence 45789999999999999998864211 23578888999999999999 99999999999986 6789999
Q ss_pred HHHHHHHHHHHHH
Q 010827 435 FQQADFAGWNLWA 447 (500)
Q Consensus 435 ~~~g~~aa~~i~~ 447 (500)
..||..++.+|.+
T Consensus 324 ~~~g~~aa~~i~g 336 (466)
T PRK07845 324 AMQGRIAMYHALG 336 (466)
T ss_pred HHHHHHHHHHHcC
Confidence 9999999999974
No 26
>PRK07846 mycothione reductase; Reviewed
Probab=100.00 E-value=5.6e-35 Score=302.03 Aligned_cols=308 Identities=19% Similarity=0.245 Sum_probs=224.1
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC---------CcccCcchhh-----h-----cccc------c
Q 010827 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE---------RFVFKPMLYE-----L-----LSGE------V 134 (500)
Q Consensus 80 ~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~---------~~~~~~~~~~-----~-----~~g~------~ 134 (500)
+|++||||||+|..||..+ .|.+|+|||++. +.+.+.++.. . ..|. .
T Consensus 2 yD~vVIG~G~~g~~aa~~~--------~G~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~ 73 (451)
T PRK07846 2 YDLIIIGTGSGNSILDERF--------ADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGV 73 (451)
T ss_pred CCEEEECCCHHHHHHHHHH--------CCCeEEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcC
Confidence 7999999999999988653 488999999864 1111111000 0 0010 1
Q ss_pred cCcccc-------cc-----HHHH-hccCCcEEEEeeEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCC
Q 010827 135 DAWEIA-------PR-----FADL-LANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201 (500)
Q Consensus 135 ~~~~~~-------~~-----~~~~-~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~ 201 (500)
++..+. .. .... ++..+++++.++...++.. ++++.++..+.||+||||||+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~---------------~V~v~~g~~~~~d~lViATGs 138 (451)
T PRK07846 74 RWPDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIGPK---------------TLRTGDGEEITADQVVIAAGS 138 (451)
T ss_pred CHHHHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEecCC---------------EEEECCCCEEEeCEEEEcCCC
Confidence 111111 11 1222 4566889998877766422 677777778999999999999
Q ss_pred CCCCCCCCCccccccCCCChHHHHHHHHHHHHHHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCc
Q 010827 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETT 281 (500)
Q Consensus 202 ~p~~~~i~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~ 281 (500)
+|..|++||.+.. .+++.+++..+... +++++|||+|.+|+|+|..|++.+.+ |+++++.+.
T Consensus 139 ~p~~p~i~g~~~~--~~~~~~~~~~l~~~-------------~~~vvIIGgG~iG~E~A~~l~~~G~~---Vtli~~~~~ 200 (451)
T PRK07846 139 RPVIPPVIADSGV--RYHTSDTIMRLPEL-------------PESLVIVGGGFIAAEFAHVFSALGVR---VTVVNRSGR 200 (451)
T ss_pred CCCCCCCCCcCCc--cEEchHHHhhhhhc-------------CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCc
Confidence 9999999986422 24555665544332 68999999999999999999988776 999999999
Q ss_pred cCCCCCcchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccEEe
Q 010827 282 ICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 361 (500)
Q Consensus 282 ~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~ 361 (500)
+++.++++..+.+.+.+ +.+|++++++.+++++.++ +++.+.+. ++++++
T Consensus 201 ll~~~d~~~~~~l~~l~-~~~v~i~~~~~v~~i~~~~-----------------------~~v~v~~~------~g~~i~ 250 (451)
T PRK07846 201 LLRHLDDDISERFTELA-SKRWDVRLGRNVVGVSQDG-----------------------SGVTLRLD------DGSTVE 250 (451)
T ss_pred cccccCHHHHHHHHHHH-hcCeEEEeCCEEEEEEEcC-----------------------CEEEEEEC------CCcEee
Confidence 99888888887776655 5689999999999998644 45555542 567899
Q ss_pred ecEEEEecCCCCCCCCCCCCCCccCCCCCCCCCceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHH
Q 010827 362 ADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFA 441 (500)
Q Consensus 362 ~D~vi~a~G~~p~~~~~~~~~~~~~~~~~~~~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~a 441 (500)
+|.|++|+|++|+.+++... ..+++++++|+|.||+++|| +.|+|||+|||+.. +.+.+.|.+||+.+
T Consensus 251 ~D~vl~a~G~~pn~~~l~~~---~~gl~~~~~G~i~Vd~~~~T-s~p~IyA~GD~~~~--------~~l~~~A~~~g~~~ 318 (451)
T PRK07846 251 ADVLLVATGRVPNGDLLDAA---AAGVDVDEDGRVVVDEYQRT-SAEGVFALGDVSSP--------YQLKHVANHEARVV 318 (451)
T ss_pred cCEEEEEECCccCccccCch---hcCceECCCCcEeECCCccc-CCCCEEEEeecCCC--------ccChhHHHHHHHHH
Confidence 99999999999999886422 23578888999999999998 99999999999986 56788999999999
Q ss_pred HHHHHHHHC----CCCCCCceecCceeEEEecC
Q 010827 442 GWNLWAAIN----DRPLLPFRFQNLGEMMILGR 470 (500)
Q Consensus 442 a~~i~~~l~----~~~~~p~~~~~~~~~~~~G~ 470 (500)
|.||.+... .....|+..-..+++.++|-
T Consensus 319 a~ni~~~~~~~~~~~~~~p~~if~~p~ia~vGl 351 (451)
T PRK07846 319 QHNLLHPDDLIASDHRFVPAAVFTHPQIASVGL 351 (451)
T ss_pred HHHHcCCCCccccCCCCCCeEEECCCCcEeEeC
Confidence 999975311 12233433222346666663
No 27
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=100.00 E-value=1.7e-35 Score=291.22 Aligned_cols=290 Identities=20% Similarity=0.196 Sum_probs=213.6
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchh---hhcccc---ccCccccccHHHHhccCCcE
Q 010827 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLY---ELLSGE---VDAWEIAPRFADLLANTGVQ 153 (500)
Q Consensus 80 ~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~---~~~~g~---~~~~~~~~~~~~~~~~~~v~ 153 (500)
+||+|||||||||+||..|++ .|++|+|||+++. ....... ...++. ....++...+.+.+++++++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~------~g~~v~lie~~~~-gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~ 73 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAAR------ANLKTLIIEGMEP-GGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAE 73 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHH------CCCCEEEEeccCC-CcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCe
Confidence 589999999999999999998 6899999998762 1111100 001111 12234556677778888999
Q ss_pred EEEeeEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCCCCCCCCCccccccC---CCChHHHHHHHHH
Q 010827 154 FFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFP---FSTLEDACRVDRK 230 (500)
Q Consensus 154 ~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p~~~~i~G~~~~~~~---~~~~~~~~~~~~~ 230 (500)
++..+|+++++..+. +.+.+.++..+.||+||+|||+.|..|.+||.+.+... .+...+. .
T Consensus 74 ~~~~~v~~v~~~~~~-----------~~v~~~~~~~~~~d~liiAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~-----~ 137 (300)
T TIGR01292 74 IIYEEVIKVDLSDRP-----------FKVKTGDGKEYTAKAVIIATGASARKLGIPGEDEFLGRGVSYCATCDG-----P 137 (300)
T ss_pred EEEEEEEEEEecCCe-----------eEEEeCCCCEEEeCEEEECCCCCcccCCCCChhhcCCccEEEeeecCh-----h
Confidence 988999999876542 35666677789999999999999998889986432111 1111110 0
Q ss_pred HHHHHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCCCCcchHHHHHHHHHhC-CcEEEcCc
Q 010827 231 LSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSAR-KVQLVLGY 309 (500)
Q Consensus 231 l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~~~~~~~~~~~~~l~~~-gV~i~~~~ 309 (500)
. ..+++|+|||+|.+|+|+|..|++.+.+ |+++++.+.+. ....+.+.+++. ||++++++
T Consensus 138 ~----------~~~~~v~ViG~G~~~~e~a~~l~~~~~~---V~~v~~~~~~~------~~~~~~~~l~~~~gv~~~~~~ 198 (300)
T TIGR01292 138 F----------FKNKEVAVVGGGDSAIEEALYLTRIAKK---VTLVHRRDKFR------AEKILLDRLRKNPNIEFLWNS 198 (300)
T ss_pred h----------cCCCEEEEECCChHHHHHHHHHHhhcCE---EEEEEeCcccC------cCHHHHHHHHhCCCeEEEecc
Confidence 0 1167999999999999999999887665 99999977542 234566777777 99999999
Q ss_pred eEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccEEeecEEEEecCCCCCCCCCCCCCCccCCCC
Q 010827 310 FVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLP 389 (500)
Q Consensus 310 ~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~p~~~~~~~~~~~~~~~~ 389 (500)
.+++++.++.. ..+.+. +. ..++++++++|.||+|+|++|+.+++..+ +.
T Consensus 199 ~v~~i~~~~~~---------------------~~v~~~--~~-~~g~~~~i~~D~vi~a~G~~~~~~~l~~~------~~ 248 (300)
T TIGR01292 199 TVKEIVGDNKV---------------------EGVKIK--NT-VTGEEEELKVDGVFIAIGHEPNTELLKGL------LE 248 (300)
T ss_pred EEEEEEccCcE---------------------EEEEEE--ec-CCCceEEEEccEEEEeeCCCCChHHHHHh------he
Confidence 99999864310 123332 11 11245789999999999999998777652 44
Q ss_pred CCCCCceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 010827 390 LNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAI 449 (500)
Q Consensus 390 ~~~~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l 449 (500)
++++|++.||+++++ ++|+||++|||+... ++.+..|+.||+.+|.+|.+.+
T Consensus 249 ~~~~g~i~v~~~~~t-~~~~vya~GD~~~~~-------~~~~~~A~~~g~~aa~~i~~~~ 300 (300)
T TIGR01292 249 LDEGGYIVTDEGMRT-SVPGVFAAGDVRDKG-------YRQAVTAAGDGCIAALSAERYL 300 (300)
T ss_pred ecCCCcEEECCCCcc-CCCCEEEeecccCcc-------hhhhhhhhhhHHHHHHHHHhhC
Confidence 677899999999998 999999999999831 5788899999999999998653
No 28
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.6e-34 Score=300.82 Aligned_cols=290 Identities=22% Similarity=0.308 Sum_probs=217.4
Q ss_pred CCCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCccc----------Ccchh-----h---hcc---cc-
Q 010827 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF----------KPMLY-----E---LLS---GE- 133 (500)
Q Consensus 76 ~~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~----------~~~~~-----~---~~~---g~- 133 (500)
....+||+||||||||++||..|++ .|.+|+|||++. ++. +.++. . ... |.
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~------~g~~v~lie~~~-~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~ 75 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATE------RGARVTLIERGT-IGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLS 75 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHh------CCCcEEEEEccc-cccceecCCccccHHHHHHHHHHHHHhhccccCCcc
Confidence 3456899999999999999999999 588999999864 211 11000 0 000 10
Q ss_pred -----ccCccccc------------cHHHHhcc-CCcEEEEeeEEEEecCCCCCCCCCceeecCcEEEcCCc--cEEEec
Q 010827 134 -----VDAWEIAP------------RFADLLAN-TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG--LIVEYD 193 (500)
Q Consensus 134 -----~~~~~~~~------------~~~~~~~~-~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g--~~~~~d 193 (500)
.+...+.. .++..++. .+++++.+++..++.... .+.+.++ .++.||
T Consensus 76 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~-------------~V~~~~g~~~~~~~d 142 (468)
T PRK14694 76 AQAPVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTL-------------TVTLNDGGEQTVHFD 142 (468)
T ss_pred cCCCccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEE-------------EEEecCCCeEEEECC
Confidence 01111110 12222333 379999999999976643 5666665 379999
Q ss_pred EEEEeCCCCCCCCCCCCccccccCCCChHHHHHHHHHHHHHHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeE
Q 010827 194 WLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIV 273 (500)
Q Consensus 194 ~lIlAtG~~p~~~~i~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~v 273 (500)
+||||||++|..|++||.++. .+++.++...+... +++++|||+|.+|+|+|..|++++.+ |
T Consensus 143 ~lViATGs~p~~p~i~G~~~~--~~~~~~~~~~l~~~-------------~~~vvViG~G~~G~E~A~~l~~~g~~---V 204 (468)
T PRK14694 143 RAFIGTGARPAEPPVPGLAET--PYLTSTSALELDHI-------------PERLLVIGASVVALELAQAFARLGSR---V 204 (468)
T ss_pred EEEEeCCCCCCCCCCCCCCCC--ceEcchhhhchhcC-------------CCeEEEECCCHHHHHHHHHHHHcCCe---E
Confidence 999999999999999997542 23344444333221 68999999999999999999988876 9
Q ss_pred EEEecCCccCCCCCcchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeeccccc
Q 010827 274 QAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIK 353 (500)
Q Consensus 274 tlv~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~ 353 (500)
+++++ ..+++.+++++.+.+++.|++.||++++++.+.+++.++ +.+.+..
T Consensus 205 tlv~~-~~~l~~~~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~-----------------------~~~~v~~----- 255 (468)
T PRK14694 205 TVLAR-SRVLSQEDPAVGEAIEAAFRREGIEVLKQTQASEVDYNG-----------------------REFILET----- 255 (468)
T ss_pred EEEEC-CCCCCCCCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-----------------------CEEEEEE-----
Confidence 99987 567778888999999999999999999999999997644 3444442
Q ss_pred CCCccEEeecEEEEecCCCCCCCCCCCCCCccCCCCCCCCCceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHH
Q 010827 354 GLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQV 433 (500)
Q Consensus 354 ~~~~~~l~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~~~~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~ 433 (500)
++.++++|.||+|+|.+|+.+++... ..+++. ++|+|.||+++|| +.|+|||+|||+.. +.....
T Consensus 256 --~~~~i~~D~vi~a~G~~pn~~~l~l~---~~g~~~-~~G~i~vd~~~~T-s~~~IyA~GD~~~~--------~~~~~~ 320 (468)
T PRK14694 256 --NAGTLRAEQLLVATGRTPNTENLNLE---SIGVET-ERGAIRIDEHLQT-TVSGIYAAGDCTDQ--------PQFVYV 320 (468)
T ss_pred --CCCEEEeCEEEEccCCCCCcCCCCch---hcCccc-CCCeEeeCCCccc-CCCCEEEEeecCCC--------cccHHH
Confidence 23469999999999999998876321 124554 5789999999999 99999999999986 678889
Q ss_pred HHHHHHHHHHHHHH
Q 010827 434 AFQQADFAGWNLWA 447 (500)
Q Consensus 434 A~~~g~~aa~~i~~ 447 (500)
|..||+.+|.+|.+
T Consensus 321 A~~~G~~aa~~i~~ 334 (468)
T PRK14694 321 AAAGGSRAAINMTG 334 (468)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999974
No 29
>PTZ00058 glutathione reductase; Provisional
Probab=100.00 E-value=9.8e-35 Score=304.29 Aligned_cols=315 Identities=19% Similarity=0.263 Sum_probs=221.1
Q ss_pred CCCCCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCccc----------Ccchhh----------hcccc
Q 010827 74 WPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF----------KPMLYE----------LLSGE 133 (500)
Q Consensus 74 ~~~~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~----------~~~~~~----------~~~g~ 133 (500)
++....+||+||||||||+.||..+++ .|.+|+|||++. ++. +.++.. ...|.
T Consensus 43 ~~~~~~yDvvVIG~G~aG~~aA~~aa~------~G~~ValIEk~~-~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi 115 (561)
T PTZ00058 43 KKPRMVYDLIVIGGGSGGMAAARRAAR------NKAKVALVEKDY-LGGTCVNVGCVPKKIMFNAASIHDILENSRHYGF 115 (561)
T ss_pred cCCCccccEEEECcCHHHHHHHHHHHH------cCCeEEEEeccc-ccccccccCCCCCchhhhhcccHHHHHHHHhcCC
Confidence 333456899999999999999999999 588999999863 221 111100 00010
Q ss_pred -----ccCcc-----------ccccHHHHhccCCcEEEEeeEEEEecCCCC-------CCCCCceeecCcEE------Ec
Q 010827 134 -----VDAWE-----------IAPRFADLLANTGVQFFKDRVKLLCPSDHL-------GVNGPMACTHGGTV------LL 184 (500)
Q Consensus 134 -----~~~~~-----------~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~-------~~~~~~~~~~~~~v------~~ 184 (500)
.+... +...+.+.++..+|+++.++....++..-. +.+.........++ ..
T Consensus 116 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 195 (561)
T PTZ00058 116 DTQFSFNLPLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQL 195 (561)
T ss_pred CccCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceec
Confidence 01111 112234456667999999876555432100 00000000000112 23
Q ss_pred CCccEEEecEEEEeCCCCCCCCCCCCccccccCCCChHHHHHHHHHHHHHHHhccCCCCccEEEEECCChhHHHHHHHHH
Q 010827 185 ESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVS 264 (500)
Q Consensus 185 ~~g~~~~~d~lIlAtG~~p~~~~i~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~ 264 (500)
+++..+.||+||||||++|..|++||.+ . ..+.++...+. .+++|+|||+|.+|+|+|..++
T Consensus 196 ~~g~~i~ad~lVIATGS~P~~P~IpG~~-~---v~ts~~~~~l~--------------~pk~VvIIGgG~iGlE~A~~l~ 257 (561)
T PTZ00058 196 DDGQVIEGKNILIAVGNKPIFPDVKGKE-F---TISSDDFFKIK--------------EAKRIGIAGSGYIAVELINVVN 257 (561)
T ss_pred CCCcEEECCEEEEecCCCCCCCCCCCce-e---EEEHHHHhhcc--------------CCCEEEEECCcHHHHHHHHHHH
Confidence 4566899999999999999999999863 2 22333332211 1689999999999999999999
Q ss_pred HHHhhcCeEEEEecCCccCCCCCcchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcce
Q 010827 265 ERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKY 344 (500)
Q Consensus 265 ~~~~~~~~vtlv~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 344 (500)
+.+.+ |+++++.+.+++.+++++.+.+++.|++.||+++++..+.+++.+++ +++
T Consensus 258 ~~G~~---Vtli~~~~~il~~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~----------------------~~v 312 (561)
T PTZ00058 258 RLGAE---SYIFARGNRLLRKFDETIINELENDMKKNNINIITHANVEEIEKVKE----------------------KNL 312 (561)
T ss_pred HcCCc---EEEEEecccccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCC----------------------CcE
Confidence 98887 99999999999999999999999999999999999999999986431 234
Q ss_pred eEeecccccCCCccEEeecEEEEecCCCCCCCCCCCCCCccCCCCCCCCCceEeCCCcccCCCCCEEEecccccccC---
Q 010827 345 ILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRD--- 421 (500)
Q Consensus 345 ~l~~~~~~~~~~~~~l~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~~~~g~i~vd~~~~t~~~~~vyaiGD~~~~~~--- 421 (500)
.+... .+++++++|.|++++|++|+++++...+ .++ .+++|+|.||+++|| +.|+|||+|||+..++
T Consensus 313 ~v~~~-----~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~---~~~-~~~~G~I~VDe~lqT-s~p~IYA~GDv~~~~~~~~ 382 (561)
T PTZ00058 313 TIYLS-----DGRKYEHFDYVIYCVGRSPNTEDLNLKA---LNI-KTPKGYIKVDDNQRT-SVKHIYAVGDCCMVKKNQE 382 (561)
T ss_pred EEEEC-----CCCEEEECCEEEECcCCCCCccccCccc---cce-ecCCCeEEECcCCcc-CCCCEEEeEeccCcccccc
Confidence 44321 1346799999999999999988775432 122 346899999999999 9999999999998421
Q ss_pred ---------------------CCCCC--CCchHHHHHHHHHHHHHHHHHH
Q 010827 422 ---------------------SSGRP--LPATAQVAFQQADFAGWNLWAA 448 (500)
Q Consensus 422 ---------------------~~~~~--~~~~~~~A~~~g~~aa~~i~~~ 448 (500)
..+++ .+.+...|.+||+.+|.+|.+.
T Consensus 383 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g~ 432 (561)
T PTZ00058 383 IEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGP 432 (561)
T ss_pred ccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHhCC
Confidence 12222 2678899999999999999753
No 30
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=100.00 E-value=4.9e-35 Score=303.60 Aligned_cols=290 Identities=20% Similarity=0.258 Sum_probs=214.4
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCC--------CCccc----------Ccchhhh-----c----
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQS--------ERFVF----------KPMLYEL-----L---- 130 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~--------~~~~~----------~~~~~~~-----~---- 130 (500)
..+||+||||||+|+.||..++++ .|.+|+|||++ +.++. +.++... .
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~-----~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~ 76 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATL-----YKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESA 76 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHh-----cCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhh
Confidence 358999999999999999999993 17899999973 22211 1111000 0
Q ss_pred -ccc--------ccCcc-----------ccccHHHHhcc-CCcEEEEeeEEEEecCCCCCCCCCceeecCcEEEcC----
Q 010827 131 -SGE--------VDAWE-----------IAPRFADLLAN-TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLE---- 185 (500)
Q Consensus 131 -~g~--------~~~~~-----------~~~~~~~~~~~-~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~---- 185 (500)
.|. .++.. +...+...++. .+++++.++...++.. ++...
T Consensus 77 ~~gi~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~---------------~v~V~~~~~ 141 (486)
T TIGR01423 77 GFGWEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKN---------------VVLVRESAD 141 (486)
T ss_pred ccCeeccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCC---------------EEEEeeccC
Confidence 010 01101 11112334555 4899999987666532 22221
Q ss_pred -C---ccEEEecEEEEeCCCCCCCCCCCCccccccCCCChHHHHHHHHHHHHHHHhccCCCCccEEEEECCChhHHHHHH
Q 010827 186 -S---GLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAA 261 (500)
Q Consensus 186 -~---g~~~~~d~lIlAtG~~p~~~~i~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~ 261 (500)
+ ...+.||+||||||++|..|++||.+. +.+.+++..+.. .+++++|||+|.+|+|+|.
T Consensus 142 ~~~~~~~~~~~d~lIIATGs~p~~p~i~G~~~----~~~~~~~~~~~~-------------~~~~vvIIGgG~iG~E~A~ 204 (486)
T TIGR01423 142 PKSAVKERLQAEHILLATGSWPQMLGIPGIEH----CISSNEAFYLDE-------------PPRRVLTVGGGFISVEFAG 204 (486)
T ss_pred CCCCcceEEECCEEEEecCCCCCCCCCCChhh----eechhhhhcccc-------------CCCeEEEECCCHHHHHHHH
Confidence 1 247999999999999999999998642 233444332221 1689999999999999999
Q ss_pred HHHHH---HhhcCeEEEEecCCccCCCCCcchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccc
Q 010827 262 TVSER---LEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAAD 338 (500)
Q Consensus 262 ~l~~~---~~~~~~vtlv~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~ 338 (500)
.++.+ +.+ |+++++.+.+++.+++.+.+.+++.|++.||++++++.+++++.+++
T Consensus 205 ~~~~l~~~G~~---Vtli~~~~~il~~~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~------------------- 262 (486)
T TIGR01423 205 IFNAYKPRGGK---VTLCYRNNMILRGFDSTLRKELTKQLRANGINIMTNENPAKVTLNAD------------------- 262 (486)
T ss_pred HHHHhccCCCe---EEEEecCCccccccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCC-------------------
Confidence 88765 444 99999999999999999999999999999999999999999986431
Q ss_pred cCCcceeEeecccccCCCccEEeecEEEEecCCCCCCCCCCCCCCccCCCCCCCCCceEeCCCcccCCCCCEEEeccccc
Q 010827 339 KNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSA 418 (500)
Q Consensus 339 ~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~~~~g~i~vd~~~~t~~~~~vyaiGD~~~ 418 (500)
+.+.+.+. ++.++++|.||+++|++|+.+++... ..+++++++|+|.||+++|| +.|+|||+|||+.
T Consensus 263 ---~~~~v~~~------~g~~i~~D~vl~a~G~~Pn~~~l~l~---~~gl~~~~~G~I~Vd~~l~T-s~~~IyA~GDv~~ 329 (486)
T TIGR01423 263 ---GSKHVTFE------SGKTLDVDVVMMAIGRVPRTQTLQLD---KVGVELTKKGAIQVDEFSRT-NVPNIYAIGDVTD 329 (486)
T ss_pred ---ceEEEEEc------CCCEEEcCEEEEeeCCCcCcccCCch---hhCceECCCCCEecCCCCcC-CCCCEEEeeecCC
Confidence 22334432 45689999999999999998865421 23578888999999999998 9999999999997
Q ss_pred ccCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 010827 419 LRDSSGRPLPATAQVAFQQADFAGWNLWA 447 (500)
Q Consensus 419 ~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 447 (500)
. +...+.|+.||+.+|.||.+
T Consensus 330 ~--------~~l~~~A~~qG~~aa~ni~g 350 (486)
T TIGR01423 330 R--------VMLTPVAINEGAAFVDTVFG 350 (486)
T ss_pred C--------cccHHHHHHHHHHHHHHHhC
Confidence 5 67888999999999999975
No 31
>PRK10262 thioredoxin reductase; Provisional
Probab=100.00 E-value=4.7e-35 Score=290.74 Aligned_cols=301 Identities=16% Similarity=0.112 Sum_probs=213.8
Q ss_pred CCCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCC---cccCcchhhhccc--cccCccccccHHHHhccC
Q 010827 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER---FVFKPMLYELLSG--EVDAWEIAPRFADLLANT 150 (500)
Q Consensus 76 ~~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~---~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~ 150 (500)
+...++|+|||||||||+||..|++ +|+++++||+.+. +...+..+.+... ......+...+.++...+
T Consensus 3 ~~~~~~vvIIGgGpaGl~aA~~l~~------~g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (321)
T PRK10262 3 TTKHSKLLILGSGPAGYTAAVYAAR------ANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKF 76 (321)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHH------CCCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHC
Confidence 4567999999999999999999999 6889999986432 1111111111111 112223344456666667
Q ss_pred CcEEEEeeEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCCCCCCCCCccccccC---CCChHHHHHH
Q 010827 151 GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFP---FSTLEDACRV 227 (500)
Q Consensus 151 ~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p~~~~i~G~~~~~~~---~~~~~~~~~~ 227 (500)
++++..+++..++...+. +.++.+. ..+.||+||+|||+.|+.|++||.+.+... .+...+. .
T Consensus 77 ~~~~~~~~v~~v~~~~~~-----------~~v~~~~-~~~~~d~vilAtG~~~~~~~i~g~~~~~~~~v~~~~~~~~--~ 142 (321)
T PRK10262 77 ETEIIFDHINKVDLQNRP-----------FRLTGDS-GEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDG--F 142 (321)
T ss_pred CCEEEeeEEEEEEecCCe-----------EEEEecC-CEEEECEEEECCCCCCCCCCCCCHHHcCCCcEEEeecCCH--H
Confidence 777777778788765442 3454433 378999999999999999999996432111 1111111 1
Q ss_pred HHHHHHHHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCCCCcchHHHHHHHHHhCCcEEEc
Q 010827 228 DRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVL 307 (500)
Q Consensus 228 ~~~l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~ 307 (500)
.. .+++|+|||+|.+|+|+|..|++.+.+ |+++++.+.+. ..+.+.+.+++.|++.||++++
T Consensus 143 ~~-------------~g~~vvVvGgG~~g~e~A~~l~~~~~~---Vtlv~~~~~~~--~~~~~~~~~~~~l~~~gV~i~~ 204 (321)
T PRK10262 143 FY-------------RNQKVAVIGGGNTAVEEALYLSNIASE---VHLIHRRDGFR--AEKILIKRLMDKVENGNIILHT 204 (321)
T ss_pred Hc-------------CCCEEEEECCCHHHHHHHHHHHhhCCE---EEEEEECCccC--CCHHHHHHHHhhccCCCeEEEe
Confidence 00 168999999999999999999988776 99999977652 3355677888889999999999
Q ss_pred CceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccEEeecEEEEecCCCCCCCCCCCCCCccCC
Q 010827 308 GYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD 387 (500)
Q Consensus 308 ~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~p~~~~~~~~~~~~~~ 387 (500)
++.++++..++... ..++++. ...+++.+++++|.||+++|++|+..++.. +
T Consensus 205 ~~~v~~v~~~~~~~--------------------~~v~~~~--~~~~~~~~~i~~D~vv~a~G~~p~~~l~~~------~ 256 (321)
T PRK10262 205 NRTLEEVTGDQMGV--------------------TGVRLRD--TQNSDNIESLDVAGLFVAIGHSPNTAIFEG------Q 256 (321)
T ss_pred CCEEEEEEcCCccE--------------------EEEEEEE--cCCCCeEEEEECCEEEEEeCCccChhHhhc------c
Confidence 99999998743100 1344431 111223468999999999999999887653 2
Q ss_pred CCCCCCCceEeCC-----CcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHCC
Q 010827 388 LPLNARGQAETDE-----TLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 451 (500)
Q Consensus 388 ~~~~~~g~i~vd~-----~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 451 (500)
+.+ ++|+|.||+ +++| +.|+|||+|||+... .+++..|+.+|..||..|...+.+
T Consensus 257 l~~-~~g~i~vd~~~~~~~~~t-~~~~VyA~GD~~~~~-------~~~~~~A~~~g~~Aa~~~~~~l~~ 316 (321)
T PRK10262 257 LEL-ENGYIKVQSGIHGNATQT-SIPGVFAAGDVMDHI-------YRQAITSAGTGCMAALDAERYLDG 316 (321)
T ss_pred ccc-cCCEEEECCCCccccccc-CCCCEEECeeccCCC-------cceEEEEehhHHHHHHHHHHHHHh
Confidence 444 468999997 6788 999999999999642 356667999999999999998864
No 32
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=3.2e-34 Score=298.59 Aligned_cols=293 Identities=21% Similarity=0.241 Sum_probs=208.0
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC---------CcccCcchh-----hhcc-----ccccCccc
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE---------RFVFKPMLY-----ELLS-----GEVDAWEI 139 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~---------~~~~~~~~~-----~~~~-----g~~~~~~~ 139 (500)
.+||+||||||||++||..|++ .|++|+|||++. +.+.+.++. ..+. .... ...
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~------~G~~V~lie~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~-~~~ 76 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQ------LGLKTAVVEKKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGIS-GEV 76 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHh------CCCeEEEEecCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCC-cCc
Confidence 4899999999999999999999 689999999863 111111110 0000 0000 000
Q ss_pred ccc------------------HHHHhccCCcEEEEeeEEEEecCCCCCCCCCceeecCcEEEcCCc--cEEEecEEEEeC
Q 010827 140 APR------------------FADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG--LIVEYDWLVLSL 199 (500)
Q Consensus 140 ~~~------------------~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g--~~~~~d~lIlAt 199 (500)
... ....++..+++.+.++...++...- .+...++ ..+.||+|||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v-------------~v~~~~g~~~~~~~d~lViAT 143 (466)
T PRK07818 77 TFDYGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTL-------------EVDLNDGGTETVTFDNAIIAT 143 (466)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEE-------------EEEecCCCeeEEEcCEEEEeC
Confidence 111 1122233467777765554443211 2333344 379999999999
Q ss_pred CCCCCCCCCCCccccccCCCChHHHHHHHHHHHHHHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecC
Q 010827 200 GAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVE 279 (500)
Q Consensus 200 G~~p~~~~i~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~ 279 (500)
|++|..| ||.+.. ..+.+.++...... .+++|+|||+|.+|+|+|..|++++.+ |+++++.
T Consensus 144 Gs~p~~~--pg~~~~-~~v~~~~~~~~~~~-------------~~~~vvVIGgG~ig~E~A~~l~~~G~~---Vtlv~~~ 204 (466)
T PRK07818 144 GSSTRLL--PGTSLS-ENVVTYEEQILSRE-------------LPKSIVIAGAGAIGMEFAYVLKNYGVD---VTIVEFL 204 (466)
T ss_pred CCCCCCC--CCCCCC-CcEEchHHHhcccc-------------CCCeEEEECCcHHHHHHHHHHHHcCCe---EEEEecC
Confidence 9999764 554211 11223333211111 168999999999999999999998876 9999999
Q ss_pred CccCCCCCcchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccE
Q 010827 280 TTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQI 359 (500)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~ 359 (500)
+.+++.++++....+++.|++.||++++++.|++++.++ +.+.+.+.. ..++.++
T Consensus 205 ~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~-----------------------~~~~v~~~~--~~g~~~~ 259 (466)
T PRK07818 205 DRALPNEDAEVSKEIAKQYKKLGVKILTGTKVESIDDNG-----------------------SKVTVTVSK--KDGKAQE 259 (466)
T ss_pred CCcCCccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeC-----------------------CeEEEEEEe--cCCCeEE
Confidence 999999999999999999999999999999999998644 334443321 1123357
Q ss_pred EeecEEEEecCCCCCCCCCCCCCCccCCCCCCCCCceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHH
Q 010827 360 FEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQAD 439 (500)
Q Consensus 360 l~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~~~~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~ 439 (500)
+++|.||+++|++|+.+++... ..+++++++|+|.||+++|| +.|+|||+|||+.. +.++..|..||+
T Consensus 260 i~~D~vi~a~G~~pn~~~l~l~---~~g~~~~~~g~i~vd~~~~T-s~p~IyAiGD~~~~--------~~l~~~A~~~g~ 327 (466)
T PRK07818 260 LEADKVLQAIGFAPRVEGYGLE---KTGVALTDRGAIAIDDYMRT-NVPHIYAIGDVTAK--------LQLAHVAEAQGV 327 (466)
T ss_pred EEeCEEEECcCcccCCCCCCch---hcCcEECCCCcEeeCCCccc-CCCCEEEEeecCCC--------cccHhHHHHHHH
Confidence 9999999999999998764211 23577888899999999999 99999999999975 678999999999
Q ss_pred HHHHHHHH
Q 010827 440 FAGWNLWA 447 (500)
Q Consensus 440 ~aa~~i~~ 447 (500)
.+|.+|.+
T Consensus 328 ~aa~~i~g 335 (466)
T PRK07818 328 VAAETIAG 335 (466)
T ss_pred HHHHHHcC
Confidence 99999974
No 33
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=2e-34 Score=300.64 Aligned_cols=301 Identities=22% Similarity=0.261 Sum_probs=212.2
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcc----------hhh-----h-----cccc----
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPM----------LYE-----L-----LSGE---- 133 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~----------~~~-----~-----~~g~---- 133 (500)
..+||+||||||||++||..|++ .|++|+|||+.. ++.... +.. . ..|.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~------~G~~v~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~ 75 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQ------LGLKTALVEKGK-LGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSG 75 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHh------CCCeEEEEEccC-CCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCC
Confidence 35899999999999999999999 689999999863 222111 000 0 0010
Q ss_pred --ccCcc-----------ccccHHHHhccCCcEEEEeeEEEEecCCCCCCCCCceeecCcEEEcCCc--cEEEecEEEEe
Q 010827 134 --VDAWE-----------IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG--LIVEYDWLVLS 198 (500)
Q Consensus 134 --~~~~~-----------~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g--~~~~~d~lIlA 198 (500)
.++.. +...+...+++.+++++.+++..+++..-.+ ... ...+.+.++ ..+.||+||||
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~-~~~-----~~~v~~~~g~~~~~~~d~lViA 149 (472)
T PRK05976 76 PALDFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSP-MPG-----TVSVETETGENEMIIPENLLIA 149 (472)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcC-Cce-----EEEEEeCCCceEEEEcCEEEEe
Confidence 01000 1112234456679999999999887651000 000 014555555 57999999999
Q ss_pred CCCCCCCCCCCCccccccCCCChHHHHHHHHHHHHHHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEec
Q 010827 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINV 278 (500)
Q Consensus 199 tG~~p~~~~i~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~ 278 (500)
||++|..++ +.......+.+.+++..+... +++|+|||||++|+|+|..|++.+.+ |+++++
T Consensus 150 TGs~p~~~p--~~~~~~~~~~~~~~~~~~~~~-------------~~~vvIIGgG~~G~E~A~~l~~~g~~---Vtli~~ 211 (472)
T PRK05976 150 TGSRPVELP--GLPFDGEYVISSDEALSLETL-------------PKSLVIVGGGVIGLEWASMLADFGVE---VTVVEA 211 (472)
T ss_pred CCCCCCCCC--CCCCCCceEEcchHhhCcccc-------------CCEEEEECCCHHHHHHHHHHHHcCCe---EEEEEe
Confidence 999986543 221111112344444332221 68999999999999999999988776 999999
Q ss_pred CCccCCCCCcchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCcc
Q 010827 279 ETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQ 358 (500)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~ 358 (500)
.+.+++.+++.+.+.+.+.|++.||++++++.+++++...+ +++.+... .+++.+
T Consensus 212 ~~~il~~~~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~----------------------~~~~~~~~---~~g~~~ 266 (472)
T PRK05976 212 ADRILPTEDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKD----------------------GGVLIVAE---HNGEEK 266 (472)
T ss_pred cCccCCcCCHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecC----------------------CCEEEEEE---eCCceE
Confidence 99999999999999999999999999999999999974110 23322211 112335
Q ss_pred EEeecEEEEecCCCCCCCCCCCCCCccCCCCCCCCCceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHH
Q 010827 359 IFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQA 438 (500)
Q Consensus 359 ~l~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~~~~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g 438 (500)
++++|.||+|+|.+|+.+.+.... .++.. .+|++.||++++| +.|+||++|||+.. +.++..|..+|
T Consensus 267 ~i~~D~vi~a~G~~p~~~~l~l~~---~~~~~-~~g~i~Vd~~l~t-s~~~IyAiGD~~~~--------~~~~~~A~~~g 333 (472)
T PRK05976 267 TLEADKVLVSVGRRPNTEGIGLEN---TDIDV-EGGFIQIDDFCQT-KERHIYAIGDVIGE--------PQLAHVAMAEG 333 (472)
T ss_pred EEEeCEEEEeeCCccCCCCCCchh---cCcee-cCCEEEECCCccc-CCCCEEEeeecCCC--------cccHHHHHHHH
Confidence 799999999999999987643211 13433 4689999999999 89999999999875 67889999999
Q ss_pred HHHHHHHHH
Q 010827 439 DFAGWNLWA 447 (500)
Q Consensus 439 ~~aa~~i~~ 447 (500)
+.+|.+|.+
T Consensus 334 ~~aa~~i~g 342 (472)
T PRK05976 334 EMAAEHIAG 342 (472)
T ss_pred HHHHHHHcC
Confidence 999999864
No 34
>PRK13748 putative mercuric reductase; Provisional
Probab=100.00 E-value=2.1e-34 Score=307.26 Aligned_cols=289 Identities=21% Similarity=0.321 Sum_probs=215.2
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccC-------c---chh---------hh-c-ccc---
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFK-------P---MLY---------EL-L-SGE--- 133 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~-------~---~~~---------~~-~-~g~--- 133 (500)
..+||+||||||||++||..|++ .|.+|+|||++ .++.. | ++. .. . .|.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~------~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~ 169 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVE------QGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAAT 169 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHh------CCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCC
Confidence 35899999999999999999999 68899999997 33221 1 000 00 0 011
Q ss_pred ---ccCccccc------------cHHHHhccC-CcEEEEeeEEEEecCCCCCCCCCceeecCcEEEcCCcc--EEEecEE
Q 010827 134 ---VDAWEIAP------------RFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGL--IVEYDWL 195 (500)
Q Consensus 134 ---~~~~~~~~------------~~~~~~~~~-~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~--~~~~d~l 195 (500)
.....+.. .+...++.. +++++.+++..++.... .+...++. .+.||+|
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~-------------~v~~~~g~~~~~~~d~l 236 (561)
T PRK13748 170 VPTIDRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTL-------------IVRLNDGGERVVAFDRC 236 (561)
T ss_pred CCccCHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEE-------------EEEeCCCceEEEEcCEE
Confidence 01111111 122334444 79999998888765422 45555553 6999999
Q ss_pred EEeCCCCCCCCCCCCccccccCCCChHHHHHHHHHHHHHHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEE
Q 010827 196 VLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQA 275 (500)
Q Consensus 196 IlAtG~~p~~~~i~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtl 275 (500)
|||||++|..|++||.+.. .+.+..+..... ..+++++|||+|.+|+|+|..|++.+.+ |++
T Consensus 237 viAtGs~p~~p~i~g~~~~--~~~~~~~~~~~~-------------~~~~~vvViGgG~ig~E~A~~l~~~g~~---Vtl 298 (561)
T PRK13748 237 LIATGASPAVPPIPGLKET--PYWTSTEALVSD-------------TIPERLAVIGSSVVALELAQAFARLGSK---VTI 298 (561)
T ss_pred EEcCCCCCCCCCCCCCCcc--ceEccHHHhhcc-------------cCCCeEEEECCCHHHHHHHHHHHHcCCE---EEE
Confidence 9999999999999997542 123333322211 1168999999999999999999988876 999
Q ss_pred EecCCccCCCCCcchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCC
Q 010827 276 INVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGL 355 (500)
Q Consensus 276 v~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~ 355 (500)
+++. .+++.+++++.+.+++.|++.||++++++.+++++.++ +.+.+..
T Consensus 299 i~~~-~~l~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~-----------------------~~~~v~~------- 347 (561)
T PRK13748 299 LARS-TLFFREDPAIGEAVTAAFRAEGIEVLEHTQASQVAHVD-----------------------GEFVLTT------- 347 (561)
T ss_pred EecC-ccccccCHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-----------------------CEEEEEe-------
Confidence 9984 56677888999999999999999999999999997644 4454542
Q ss_pred CccEEeecEEEEecCCCCCCCCCCCCCCccCCCCCCCCCceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHH
Q 010827 356 ESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAF 435 (500)
Q Consensus 356 ~~~~l~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~~~~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~ 435 (500)
++.++++|.||+++|++||.+++... ..+++++++|+|.||+++|| +.|||||+|||+.. +.....|.
T Consensus 348 ~~~~i~~D~vi~a~G~~pn~~~l~l~---~~g~~~~~~g~i~vd~~~~T-s~~~IyA~GD~~~~--------~~~~~~A~ 415 (561)
T PRK13748 348 GHGELRADKLLVATGRAPNTRSLALD---AAGVTVNAQGAIVIDQGMRT-SVPHIYAAGDCTDQ--------PQFVYVAA 415 (561)
T ss_pred cCCeEEeCEEEEccCCCcCCCCcCch---hcCceECCCCCEeECCCccc-CCCCEEEeeecCCC--------ccchhHHH
Confidence 22369999999999999998764321 22578888999999999999 99999999999986 67788999
Q ss_pred HHHHHHHHHHHH
Q 010827 436 QQADFAGWNLWA 447 (500)
Q Consensus 436 ~~g~~aa~~i~~ 447 (500)
.+|+.+|.+|.+
T Consensus 416 ~~g~~aa~~i~g 427 (561)
T PRK13748 416 AAGTRAAINMTG 427 (561)
T ss_pred HHHHHHHHHHcC
Confidence 999999999974
No 35
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=3.5e-34 Score=298.47 Aligned_cols=291 Identities=24% Similarity=0.318 Sum_probs=213.2
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcc----------hh---------hh--cc-----
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPM----------LY---------EL--LS----- 131 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~----------~~---------~~--~~----- 131 (500)
..+||+||||||||++||..|++ .|++|+|||++ .++.... +. .. ++
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~------~g~~v~lie~~-~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~ 74 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAK------LGKKVALIEKG-PLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADG 74 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHH------CCCeEEEEeCC-ccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCC
Confidence 34899999999999999999999 68899999994 3332211 00 00 00
Q ss_pred ccccCccccccH------------HHHhccCCcEEEEeeEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeC
Q 010827 132 GEVDAWEIAPRF------------ADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSL 199 (500)
Q Consensus 132 g~~~~~~~~~~~------------~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAt 199 (500)
...+...+.... ...++..+++++.+++..++.. .+.. ++..+.||+|||||
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---------------~v~v-~~~~~~~d~lIiAT 138 (460)
T PRK06292 75 PKIDFKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPN---------------TVEV-NGERIEAKNIVIAT 138 (460)
T ss_pred CccCHHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCC---------------EEEE-CcEEEEeCEEEEeC
Confidence 011111111111 2223445788887776665432 3434 45689999999999
Q ss_pred CCCCCCCCCCCccc-cccCCCChHHHHHHHHHHHHHHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEec
Q 010827 200 GAEPKLDVVPGAAE-FAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINV 278 (500)
Q Consensus 200 G~~p~~~~i~G~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~ 278 (500)
|+. .|.+||... ....+.+.++...+... +++|+|||+|.+|+|+|..|++.+.+ |+++++
T Consensus 139 Gs~--~p~ipg~~~~~~~~~~~~~~~~~~~~~-------------~k~v~VIGgG~~g~E~A~~l~~~g~~---Vtli~~ 200 (460)
T PRK06292 139 GSR--VPPIPGVWLILGDRLLTSDDAFELDKL-------------PKSLAVIGGGVIGLELGQALSRLGVK---VTVFER 200 (460)
T ss_pred CCC--CCCCCCCcccCCCcEECchHHhCcccc-------------CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEec
Confidence 998 556676532 11223444444433222 78999999999999999999988777 999999
Q ss_pred CCccCCCCCcchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCcc
Q 010827 279 ETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQ 358 (500)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~ 358 (500)
.+.+++.+++++...+++.|++. |++++++.+++++.+++ ..+++.. ..+++.
T Consensus 201 ~~~~l~~~d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~----------------------~~v~~~~----~~~~~~ 253 (460)
T PRK06292 201 GDRILPLEDPEVSKQAQKILSKE-FKIKLGAKVTSVEKSGD----------------------EKVEELE----KGGKTE 253 (460)
T ss_pred CCCcCcchhHHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCC----------------------ceEEEEE----cCCceE
Confidence 99999988999999999999999 99999999999986431 1344432 112556
Q ss_pred EEeecEEEEecCCCCCCCCCCCCCCccCCCCCCCCCceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHH
Q 010827 359 IFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQA 438 (500)
Q Consensus 359 ~l~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~~~~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g 438 (500)
++++|.||+++|.+|+.+.+... ..+++++++|+|.||+++|| +.|+|||+|||+.. +.++..|..||
T Consensus 254 ~i~~D~vi~a~G~~p~~~~l~l~---~~g~~~~~~g~i~vd~~~~t-s~~~IyA~GD~~~~--------~~~~~~A~~qg 321 (460)
T PRK06292 254 TIEADYVLVATGRRPNTDGLGLE---NTGIELDERGRPVVDEHTQT-SVPGIYAAGDVNGK--------PPLLHEAADEG 321 (460)
T ss_pred EEEeCEEEEccCCccCCCCCCcH---hhCCEecCCCcEeECCCccc-CCCCEEEEEecCCC--------ccchhHHHHHH
Confidence 79999999999999998864321 23577888999999999999 99999999999986 56788999999
Q ss_pred HHHHHHHHHH
Q 010827 439 DFAGWNLWAA 448 (500)
Q Consensus 439 ~~aa~~i~~~ 448 (500)
+.+|.+|.+.
T Consensus 322 ~~aa~~i~~~ 331 (460)
T PRK06292 322 RIAAENAAGD 331 (460)
T ss_pred HHHHHHhcCC
Confidence 9999999753
No 36
>PRK14727 putative mercuric reductase; Provisional
Probab=100.00 E-value=5.7e-34 Score=297.16 Aligned_cols=313 Identities=15% Similarity=0.214 Sum_probs=222.9
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchh-------------------hh-ccccc---
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLY-------------------EL-LSGEV--- 134 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~-------------------~~-~~g~~--- 134 (500)
.++||+|||+||||+++|..|++ .|.+|+|||+.+.++...... .. ..|..
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~------~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~ 88 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAE------HGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVA 88 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHh------CCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCC
Confidence 45899999999999999999999 688999999975332211000 00 00110
Q ss_pred ---cCcccc------------ccHHHHhccC-CcEEEEeeEEEEecCCCCCCCCCceeecCcEEEcCCc--cEEEecEEE
Q 010827 135 ---DAWEIA------------PRFADLLANT-GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG--LIVEYDWLV 196 (500)
Q Consensus 135 ---~~~~~~------------~~~~~~~~~~-~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g--~~~~~d~lI 196 (500)
+...+. ..+...++.. +++++.++...++... ..+...++ .++.||+||
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~-------------v~v~~~~g~~~~~~~d~lV 155 (479)
T PRK14727 89 PSIDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNT-------------LVVRLHDGGERVLAADRCL 155 (479)
T ss_pred CccCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCE-------------EEEEeCCCceEEEEeCEEE
Confidence 000000 0122333333 7899988876665432 14555555 369999999
Q ss_pred EeCCCCCCCCCCCCccccccCCCChHHHHHHHHHHHHHHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEE
Q 010827 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAI 276 (500)
Q Consensus 197 lAtG~~p~~~~i~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv 276 (500)
||||++|..|++||.++.. +.+..+..... ..+++|+|||+|.+|+|+|..+++.+.+ |+++
T Consensus 156 iATGs~p~~p~i~G~~~~~--~~~~~~~l~~~-------------~~~k~vvVIGgG~iG~E~A~~l~~~G~~---Vtlv 217 (479)
T PRK14727 156 IATGSTPTIPPIPGLMDTP--YWTSTEALFSD-------------ELPASLTVIGSSVVAAEIAQAYARLGSR---VTIL 217 (479)
T ss_pred EecCCCCCCCCCCCcCccc--eecchHHhccc-------------cCCCeEEEECCCHHHHHHHHHHHHcCCE---EEEE
Confidence 9999999999999975321 22222222111 1168999999999999999999988776 9999
Q ss_pred ecCCccCCCCCcchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCC
Q 010827 277 NVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLE 356 (500)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~ 356 (500)
++. .+++.+++.+.+.+++.|++.||++++++.+++++.++ +.+.+.. +
T Consensus 218 ~~~-~~l~~~d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~-----------------------~~~~v~~-------~ 266 (479)
T PRK14727 218 ARS-TLLFREDPLLGETLTACFEKEGIEVLNNTQASLVEHDD-----------------------NGFVLTT-------G 266 (479)
T ss_pred EcC-CCCCcchHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeC-----------------------CEEEEEE-------c
Confidence 984 67777888899999999999999999999999997644 4455542 2
Q ss_pred ccEEeecEEEEecCCCCCCCCCCCCCCccCCCCCCCCCceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHH
Q 010827 357 SQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQ 436 (500)
Q Consensus 357 ~~~l~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~~~~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~ 436 (500)
..++++|.||+|+|+.||++++... ..+++++.+|+|.||+++|| +.|+|||+|||+.. +.....|..
T Consensus 267 ~g~i~aD~VlvA~G~~pn~~~l~l~---~~g~~~~~~G~i~Vd~~~~T-s~~~IyA~GD~~~~--------~~~~~~A~~ 334 (479)
T PRK14727 267 HGELRAEKLLISTGRHANTHDLNLE---AVGVTTDTSGAIVVNPAMET-SAPDIYAAGDCSDL--------PQFVYVAAA 334 (479)
T ss_pred CCeEEeCEEEEccCCCCCccCCCch---hhCceecCCCCEEECCCeec-CCCCEEEeeecCCc--------chhhhHHHH
Confidence 3468999999999999998865322 22577888999999999999 99999999999986 567889999
Q ss_pred HHHHHHHHHHHHHCC--CCCCCceecCceeEEEecC
Q 010827 437 QADFAGWNLWAAIND--RPLLPFRFQNLGEMMILGR 470 (500)
Q Consensus 437 ~g~~aa~~i~~~l~~--~~~~p~~~~~~~~~~~~G~ 470 (500)
||+.+|.+|.+.... ....|+..-..+.+.++|-
T Consensus 335 ~G~~aa~~i~g~~~~~~~~~~p~~~~~~p~ia~vGl 370 (479)
T PRK14727 335 AGSRAGINMTGGNATLDLSAMPAVIFTDPQVATVGL 370 (479)
T ss_pred HHHHHHHHHcCCCcccccccCCcEEEecCceeeeeC
Confidence 999999999753221 1233433322346666664
No 37
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=100.00 E-value=3.8e-34 Score=297.69 Aligned_cols=293 Identities=18% Similarity=0.194 Sum_probs=215.6
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC--------Cccc----------Ccchhh-----h-----c
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE--------RFVF----------KPMLYE-----L-----L 130 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~--------~~~~----------~~~~~~-----~-----~ 130 (500)
.+||+|||+||+|+.||..+++ .|.+|+|||+.. .++. +.++.. . .
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~------~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~ 75 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAAD------YGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRN 75 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHH------CCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhh
Confidence 4799999999999999999999 688999999731 1111 111100 0 0
Q ss_pred ccc-------ccCcc-----------ccccHHHHhccCCcEEEEeeEEEEecCCCCCCCCCceeecCcEEEcCCc--cEE
Q 010827 131 SGE-------VDAWE-----------IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG--LIV 190 (500)
Q Consensus 131 ~g~-------~~~~~-----------~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g--~~~ 190 (500)
.|. .++.. +...+...++..+++++.++...+++..- .+...++ ..+
T Consensus 76 ~g~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v-------------~v~~~~g~~~~~ 142 (484)
T TIGR01438 76 YGWNVEETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDKHRI-------------KATNKKGKEKIY 142 (484)
T ss_pred cCcccCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEE-------------EEeccCCCceEE
Confidence 010 00000 01223445667799999998887765421 2332233 379
Q ss_pred EecEEEEeCCCCCCCCCCCCccccccCCCChHHHHHHHHHHHHHHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhc
Q 010827 191 EYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEK 270 (500)
Q Consensus 191 ~~d~lIlAtG~~p~~~~i~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~ 270 (500)
.||+||||||++|..|++||.++.. .+.++...+... +++++|||+|.+|+|+|..|++.+.+
T Consensus 143 ~~d~lVIATGs~p~~p~ipG~~~~~---~~~~~~~~~~~~-------------~~~vvIIGgG~iG~E~A~~l~~~G~~- 205 (484)
T TIGR01438 143 SAERFLIATGERPRYPGIPGAKELC---ITSDDLFSLPYC-------------PGKTLVVGASYVALECAGFLAGIGLD- 205 (484)
T ss_pred EeCEEEEecCCCCCCCCCCCcccee---ecHHHhhccccc-------------CCCEEEECCCHHHHHHHHHHHHhCCc-
Confidence 9999999999999999999975432 234444333221 67999999999999999999998877
Q ss_pred CeEEEEecCCccCCCCCcchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeecc
Q 010827 271 GIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQP 350 (500)
Q Consensus 271 ~~vtlv~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~ 350 (500)
|+++++ +.+++.+++++.+.+++.|++.||++++++.+.+++..+ +.+.+++.
T Consensus 206 --Vtli~~-~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~-----------------------~~~~v~~~- 258 (484)
T TIGR01438 206 --VTVMVR-SILLRGFDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIE-----------------------AKVKVTFT- 258 (484)
T ss_pred --EEEEEe-cccccccCHHHHHHHHHHHHHcCCEEEeCceEEEEEEcC-----------------------CeEEEEEe-
Confidence 999998 578888999999999999999999999999999887643 34444432
Q ss_pred cccCCCccEEeecEEEEecCCCCCCCCCCCCCCccCCCCCCC-CCceEeCCCcccCCCCCEEEecccccccCCCCCCCCc
Q 010827 351 AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPA 429 (500)
Q Consensus 351 ~~~~~~~~~l~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~~~-~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~ 429 (500)
.+++.+++++|.||+++|++||++++... ..+++++. +|+|.||+.+|| +.|+|||+|||+... +.
T Consensus 259 --~~~~~~~i~~D~vl~a~G~~pn~~~l~l~---~~gv~~~~~~G~I~Vd~~~~T-s~p~IyA~GDv~~~~-------~~ 325 (484)
T TIGR01438 259 --DSTNGIEEEYDTVLLAIGRDACTRKLNLE---NVGVKINKKTGKIPADEEEQT-NVPYIYAVGDILEDK-------QE 325 (484)
T ss_pred --cCCcceEEEeCEEEEEecCCcCCCcCCcc---cccceecCcCCeEecCCCccc-CCCCEEEEEEecCCC-------cc
Confidence 11123579999999999999998875422 23577765 599999999999 999999999999631 56
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 010827 430 TAQVAFQQADFAGWNLWA 447 (500)
Q Consensus 430 ~~~~A~~~g~~aa~~i~~ 447 (500)
....|++||+.+|++|..
T Consensus 326 l~~~A~~~g~~aa~~i~~ 343 (484)
T TIGR01438 326 LTPVAIQAGRLLAQRLFS 343 (484)
T ss_pred chHHHHHHHHHHHHHHhc
Confidence 788999999999999975
No 38
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=100.00 E-value=7.9e-34 Score=295.98 Aligned_cols=290 Identities=22% Similarity=0.279 Sum_probs=216.9
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchh---------------hh----ccccccCcccc
Q 010827 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLY---------------EL----LSGEVDAWEIA 140 (500)
Q Consensus 80 ~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~---------------~~----~~g~~~~~~~~ 140 (500)
+||+||||||||++||..|++ .|++|+|||+ +.++...... .. ...........
T Consensus 2 yDvvVIG~G~aGl~aA~~la~------~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~ 74 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQ------LGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVS 74 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHh------CCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCc
Confidence 799999999999999999999 6899999999 4433321100 00 00001000000
Q ss_pred ------------------ccHHHHhccCCcEEEEeeEEEEecCCCCCCCCCceeecCcEEEcCCc-cEEEecEEEEeCCC
Q 010827 141 ------------------PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG-LIVEYDWLVLSLGA 201 (500)
Q Consensus 141 ------------------~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~d~lIlAtG~ 201 (500)
..+..+++..+++++.+++..++.... .+...++ ..+.||+||||||+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~-------------~v~~~~g~~~~~~d~lVlAtG~ 141 (461)
T TIGR01350 75 VDWEKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPGTV-------------LVTGENGEETLTAKNIIIATGS 141 (461)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEE-------------EEecCCCcEEEEeCEEEEcCCC
Confidence 112234456689999988877654322 3444443 47999999999999
Q ss_pred CCCCCCCC-CccccccCCCChHHHHHHHHHHHHHHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCC
Q 010827 202 EPKLDVVP-GAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVET 280 (500)
Q Consensus 202 ~p~~~~i~-G~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~ 280 (500)
+|+.|++| +.... .+.+.++...+... +++|+|||+|.+|+|+|..|++.+.+ |+++++.+
T Consensus 142 ~p~~~~~~~~~~~~--~~~~~~~~~~~~~~-------------~~~vvViGgG~~g~e~A~~l~~~g~~---Vtli~~~~ 203 (461)
T TIGR01350 142 RPRSLPGPFDFDGE--VVITSTGALNLKEV-------------PESLVIIGGGVIGIEFASIFASLGSK---VTVIEMLD 203 (461)
T ss_pred CCCCCCCCCCCCCc--eEEcchHHhccccC-------------CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEEcCC
Confidence 99888776 33211 23344444433222 68999999999999999999988776 99999999
Q ss_pred ccCCCCCcchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccEE
Q 010827 281 TICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIF 360 (500)
Q Consensus 281 ~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l 360 (500)
.+++.+++...+.+.+.|++.||++++++.+.+++.++ +++.+++. . ++..++
T Consensus 204 ~~l~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~-----------------------~~v~v~~~---~-g~~~~i 256 (461)
T TIGR01350 204 RILPGEDAEVSKVVAKALKKKGVKILTNTKVTAVEKND-----------------------DQVVYENK---G-GETETL 256 (461)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeC-----------------------CEEEEEEe---C-CcEEEE
Confidence 99998888999999999999999999999999997654 45555532 1 122579
Q ss_pred eecEEEEecCCCCCCC--CCCCCCCccCCCCCCCCCceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHH
Q 010827 361 EADLVLWTVGSKPLLP--HVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQA 438 (500)
Q Consensus 361 ~~D~vi~a~G~~p~~~--~~~~~~~~~~~~~~~~~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g 438 (500)
++|.||+|+|.+|+.+ +++.. ++.++.+|++.||+++|| +.|+||++|||+.. +.++..|+.||
T Consensus 257 ~~D~vi~a~G~~p~~~~l~~~~~-----gl~~~~~g~i~vd~~l~t-~~~~IyaiGD~~~~--------~~~~~~A~~~g 322 (461)
T TIGR01350 257 TGEKVLVAVGRKPNTEGLGLENL-----GVELDERGRIVVDEYMRT-NVPGIYAIGDVIGG--------PMLAHVASHEG 322 (461)
T ss_pred EeCEEEEecCCcccCCCCCcHhh-----CceECCCCcEeeCCCccc-CCCCEEEeeecCCC--------cccHHHHHHHH
Confidence 9999999999999987 34433 477888999999999999 89999999999975 67899999999
Q ss_pred HHHHHHHHHH
Q 010827 439 DFAGWNLWAA 448 (500)
Q Consensus 439 ~~aa~~i~~~ 448 (500)
+.+|.+|.+.
T Consensus 323 ~~aa~~i~~~ 332 (461)
T TIGR01350 323 IVAAENIAGK 332 (461)
T ss_pred HHHHHHHcCC
Confidence 9999999753
No 39
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=1.1e-33 Score=293.70 Aligned_cols=289 Identities=18% Similarity=0.235 Sum_probs=213.6
Q ss_pred eEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCc---------ccCcchhh----------hcccc--------
Q 010827 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF---------VFKPMLYE----------LLSGE-------- 133 (500)
Q Consensus 81 ~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~---------~~~~~~~~----------~~~g~-------- 133 (500)
+|+||||||||++||..|++ .|.+|+|||+++.- +.+.++.. ...|.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~------~g~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 75 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQ------NGKNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSIS 75 (458)
T ss_pred eEEEECCCHHHHHHHHHHHh------CCCcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCc
Confidence 79999999999999999999 68899999997521 11111100 00011
Q ss_pred ccCcccc-----------ccHHHHhccCCcEEEEeeEEEEecCCCCCCCCCceeecCcEEEcCCc-cEEEecEEEEeCCC
Q 010827 134 VDAWEIA-----------PRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG-LIVEYDWLVLSLGA 201 (500)
Q Consensus 134 ~~~~~~~-----------~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~d~lIlAtG~ 201 (500)
.++..+. ..+...++..+++++.+++..++.... .+..+++ ..+.||+||||||+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v-------------~v~~~~~~~~~~~d~lviATGs 142 (458)
T PRK06912 76 IDWKQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRV-------------RVEYGDKEEVVDAEQFIIAAGS 142 (458)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccCCEE-------------EEeeCCCcEEEECCEEEEeCCC
Confidence 0111111 112334556689999999887765432 3444444 37999999999999
Q ss_pred CCCCCCCCCccccccCCCChHHHHHHHHHHHHHHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCc
Q 010827 202 EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETT 281 (500)
Q Consensus 202 ~p~~~~i~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~ 281 (500)
+|..|++++.+.. .+.+..++..+... +++++|||+|.+|+|+|..+.+.+.+ |+++++.+.
T Consensus 143 ~p~~~p~~~~~~~--~v~~~~~~~~~~~~-------------~~~vvIIGgG~iG~E~A~~l~~~g~~---Vtli~~~~~ 204 (458)
T PRK06912 143 EPTELPFAPFDGK--WIINSKHAMSLPSI-------------PSSLLIVGGGVIGCEFASIYSRLGTK---VTIVEMAPQ 204 (458)
T ss_pred CCCCCCCCCCCCC--eEEcchHHhCcccc-------------CCcEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCC
Confidence 9988877775321 12333444433322 68999999999999999999887766 999999999
Q ss_pred cCCCCCcchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccEEe
Q 010827 282 ICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFE 361 (500)
Q Consensus 282 ~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~ 361 (500)
+++.+++++.+.+.+.|++.||++++++.+++++.++ ..+.++. +++..+++
T Consensus 205 ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~-----------------------~~v~~~~-----~g~~~~i~ 256 (458)
T PRK06912 205 LLPGEDEDIAHILREKLENDGVKIFTGAALKGLNSYK-----------------------KQALFEY-----EGSIQEVN 256 (458)
T ss_pred cCccccHHHHHHHHHHHHHCCCEEEECCEEEEEEEcC-----------------------CEEEEEE-----CCceEEEE
Confidence 9998888999999999999999999999999997643 3444441 12335799
Q ss_pred ecEEEEecCCCCCCCCCCCCCCccCCCCCCCCCceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHH
Q 010827 362 ADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFA 441 (500)
Q Consensus 362 ~D~vi~a~G~~p~~~~~~~~~~~~~~~~~~~~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~a 441 (500)
+|.||+|+|.+|+.+.+... ..+++++++| +.||+++|| +.|+|||+|||+.. ++++..|+.||+.+
T Consensus 257 ~D~vivA~G~~p~~~~l~l~---~~gv~~~~~g-i~Vd~~~~t-s~~~VyA~GD~~~~--------~~la~~A~~~g~~a 323 (458)
T PRK06912 257 AEFVLVSVGRKPRVQQLNLE---KAGVQFSNKG-ISVNEHMQT-NVPHIYACGDVIGG--------IQLAHVAFHEGTTA 323 (458)
T ss_pred eCEEEEecCCccCCCCCCch---hcCceecCCC-EEeCCCeec-CCCCEEEEeecCCC--------cccHHHHHHHHHHH
Confidence 99999999999998754311 2246666666 999999999 99999999999975 67889999999999
Q ss_pred HHHHHH
Q 010827 442 GWNLWA 447 (500)
Q Consensus 442 a~~i~~ 447 (500)
|.+|.+
T Consensus 324 a~~~~g 329 (458)
T PRK06912 324 ALHASG 329 (458)
T ss_pred HHHHcC
Confidence 999864
No 40
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=100.00 E-value=2.5e-33 Score=290.04 Aligned_cols=287 Identities=21% Similarity=0.268 Sum_probs=209.9
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC---------CcccCcchhh--h--------cccc------
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE---------RFVFKPMLYE--L--------LSGE------ 133 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~---------~~~~~~~~~~--~--------~~g~------ 133 (500)
++|++|||+||+|+.||..+ .|.+|+|||++. +.+.+.++.. . -.|.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~--------~g~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~ 73 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRF--------ADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDS 73 (452)
T ss_pred CcCEEEECCCHHHHHHHHHH--------CCCeEEEEeCCCCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCc
Confidence 48999999999999986443 478999999864 1111111100 0 0010
Q ss_pred ccCcccc--------ccH----HHH-h--ccCCcEEEEeeEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEe
Q 010827 134 VDAWEIA--------PRF----ADL-L--ANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLS 198 (500)
Q Consensus 134 ~~~~~~~--------~~~----~~~-~--~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlA 198 (500)
.++..+. ..+ ..+ . ++.+++++.++....+. +++...++..+.||+||||
T Consensus 74 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~---------------~~V~~~~g~~~~~d~lIiA 138 (452)
T TIGR03452 74 VRWPDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGP---------------RTLRTGDGEEITGDQIVIA 138 (452)
T ss_pred cCHHHHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEecC---------------CEEEECCCcEEEeCEEEEE
Confidence 0110100 000 011 1 22578888776544422 2576767778999999999
Q ss_pred CCCCCCCCCCCCccccccCCCChHHHHHHHHHHHHHHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEec
Q 010827 199 LGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINV 278 (500)
Q Consensus 199 tG~~p~~~~i~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~ 278 (500)
||++|..|++.+.. . ..+.+.+++..+... +++++|||+|.+|+|+|..|++.+.+ |+++++
T Consensus 139 TGs~p~~p~~~~~~-~-~~~~~~~~~~~l~~~-------------~k~vvVIGgG~ig~E~A~~l~~~G~~---Vtli~~ 200 (452)
T TIGR03452 139 AGSRPYIPPAIADS-G-VRYHTNEDIMRLPEL-------------PESLVIVGGGYIAAEFAHVFSALGTR---VTIVNR 200 (452)
T ss_pred ECCCCCCCCCCCCC-C-CEEEcHHHHHhhhhc-------------CCcEEEECCCHHHHHHHHHHHhCCCc---EEEEEc
Confidence 99999888754321 1 234667776665432 68999999999999999999988876 999999
Q ss_pred CCccCCCCCcchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCcc
Q 010827 279 ETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQ 358 (500)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~ 358 (500)
.+.+++.++++..+.+.+.+ +.+|++++++.+++++.++ +++.+.+. +++
T Consensus 201 ~~~ll~~~d~~~~~~l~~~~-~~gI~i~~~~~V~~i~~~~-----------------------~~v~v~~~------~g~ 250 (452)
T TIGR03452 201 STKLLRHLDEDISDRFTEIA-KKKWDIRLGRNVTAVEQDG-----------------------DGVTLTLD------DGS 250 (452)
T ss_pred cCccccccCHHHHHHHHHHH-hcCCEEEeCCEEEEEEEcC-----------------------CeEEEEEc------CCC
Confidence 99888888888888777655 4689999999999998644 44555542 456
Q ss_pred EEeecEEEEecCCCCCCCCCCCCCCccCCCCCCCCCceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHH
Q 010827 359 IFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQA 438 (500)
Q Consensus 359 ~l~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~~~~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g 438 (500)
++++|.|++++|++|+++++... ..+++++++|+|.||+++|| +.|+|||+|||+.. +.+.+.|.+||
T Consensus 251 ~i~~D~vl~a~G~~pn~~~l~~~---~~gl~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~--------~~l~~~A~~~g 318 (452)
T TIGR03452 251 TVTADVLLVATGRVPNGDLLDAE---AAGVEVDEDGRIKVDEYGRT-SARGVWALGDVSSP--------YQLKHVANAEA 318 (452)
T ss_pred EEEcCEEEEeeccCcCCCCcCch---hcCeeECCCCcEeeCCCccc-CCCCEEEeecccCc--------ccChhHHHHHH
Confidence 89999999999999998876432 23578888999999999998 99999999999986 57888999999
Q ss_pred HHHHHHHHHH
Q 010827 439 DFAGWNLWAA 448 (500)
Q Consensus 439 ~~aa~~i~~~ 448 (500)
+.+|+||.+.
T Consensus 319 ~~~a~ni~~~ 328 (452)
T TIGR03452 319 RVVKHNLLHP 328 (452)
T ss_pred HHHHHHhcCC
Confidence 9999999753
No 41
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-34 Score=276.43 Aligned_cols=290 Identities=21% Similarity=0.233 Sum_probs=227.9
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCe-EEEEcCCCCc---ccCcchhhhcc--ccccCccccccHHHHhccCC
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQ-VLLVDQSERF---VFKPMLYELLS--GEVDAWEIAPRFADLLANTG 151 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~-V~lie~~~~~---~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~ 151 (500)
+.+||+|||||||||+||.++++ .+++ ++|+|+...- .......++++ +......+...++++....+
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r------~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~ 75 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAAR------AGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFG 75 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHH------cCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcC
Confidence 45899999999999999999999 6888 6666664322 11112222221 22334455666777777789
Q ss_pred cEEEEeeEEEEecCC-CCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCCCCCCCCCcccc---ccCCCChHHHHHH
Q 010827 152 VQFFKDRVKLLCPSD-HLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEF---AFPFSTLEDACRV 227 (500)
Q Consensus 152 v~~~~~~v~~i~~~~-~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p~~~~i~G~~~~---~~~~~~~~~~~~~ 227 (500)
+++....|..++... . |.+.++++. +.+++||||||..++.|.+||..++ ..++|..+|. .+
T Consensus 76 ~~~~~~~v~~v~~~~~~------------F~v~t~~~~-~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc~~cdg-~~ 141 (305)
T COG0492 76 VEIVEDEVEKVELEGGP------------FKVKTDKGT-YEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDG-FF 141 (305)
T ss_pred eEEEEEEEEEEeecCce------------EEEEECCCe-EEEeEEEECcCCcccCCCCCcchhhcCCceEEeeecCc-cc
Confidence 999998898888776 3 478888886 9999999999999999999875433 2345666665 22
Q ss_pred HHHHHHHHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCCCCcchHHHHHHHHHhC-CcEEE
Q 010827 228 DRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSAR-KVQLV 306 (500)
Q Consensus 228 ~~~l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~~~~~~~~~~~~~l~~~-gV~i~ 306 (500)
+ +|+|+|||||++|+|.|.+|+.++.+ |++++|.+.+.. .+.+.+.+++. +|+++
T Consensus 142 ~---------------~k~v~ViGgG~sAve~Al~L~~~a~~---Vtlv~r~~~~ra------~~~~~~~l~~~~~i~~~ 197 (305)
T COG0492 142 K---------------GKDVVVIGGGDSAVEEALYLSKIAKK---VTLVHRRDEFRA------EEILVERLKKNVKIEVL 197 (305)
T ss_pred c---------------CCeEEEEcCCHHHHHHHHHHHHhcCe---EEEEecCcccCc------CHHHHHHHHhcCCeEEE
Confidence 2 67999999999999999999999888 999999988733 55666777766 89999
Q ss_pred cCceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccEEeecEEEEecCCCCCCCCCCCCCCccC
Q 010827 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLH 386 (500)
Q Consensus 307 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~p~~~~~~~~~~~~~ 386 (500)
+++.++++..++ . ..+.++... +...++++|.+++++|+.|+.+++...+
T Consensus 198 ~~~~i~ei~G~~--v--------------------~~v~l~~~~----~~~~~~~~~gvf~~iG~~p~~~~~~~~~---- 247 (305)
T COG0492 198 TNTVVKEILGDD--V--------------------EGVVLKNVK----GEEKELPVDGVFIAIGHLPNTELLKGLG---- 247 (305)
T ss_pred eCCceeEEecCc--c--------------------ceEEEEecC----CceEEEEeceEEEecCCCCchHHHhhcc----
Confidence 999999999864 1 466666321 3556889999999999999999887754
Q ss_pred CCCCCCCCceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHCC
Q 010827 387 DLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 451 (500)
Q Consensus 387 ~~~~~~~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 451 (500)
. ++++|+|.||+.++| +.|+|||+||++... .+++..|..+|..||.++.+.+..
T Consensus 248 -~-~~~~g~I~v~~~~~T-svpGifAaGDv~~~~-------~rqi~ta~~~G~~Aa~~a~~~l~~ 302 (305)
T COG0492 248 -V-LDENGYIVVDEEMET-SVPGIFAAGDVADKN-------GRQIATAAGDGAIAALSAERYLES 302 (305)
T ss_pred -c-cCCCCcEEcCCCccc-CCCCEEEeEeeccCc-------ccEEeehhhhHHHHHHHHHHHhhh
Confidence 3 789999999999999 999999999999963 348889999999999999988764
No 42
>PTZ00052 thioredoxin reductase; Provisional
Probab=100.00 E-value=3.5e-33 Score=291.77 Aligned_cols=309 Identities=21% Similarity=0.281 Sum_probs=217.0
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC--------CcccC-------c---chhh-----------h
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE--------RFVFK-------P---MLYE-----------L 129 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~--------~~~~~-------~---~~~~-----------~ 129 (500)
.+||+||||||||++||..|++ .|++|+|||++. .++.. | ++.. .
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~------~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~ 78 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAA------HGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQ 78 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHh------CCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHh
Confidence 4899999999999999999999 689999999631 12221 1 0000 0
Q ss_pred ccc-----cccCccccccH-----------HHHhccCCcEEEEeeEEEEecCCCCCCCCCceeecCcEEEcC---CccEE
Q 010827 130 LSG-----EVDAWEIAPRF-----------ADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLE---SGLIV 190 (500)
Q Consensus 130 ~~g-----~~~~~~~~~~~-----------~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~---~g~~~ 190 (500)
..| ..+...+.... ...++..+++++.+++...+.. ++... ++..+
T Consensus 79 ~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~~---------------~v~v~~~~~~~~i 143 (499)
T PTZ00052 79 MYGWKTSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEH---------------TVSYGDNSQEETI 143 (499)
T ss_pred cCCCCCCCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccCC---------------EEEEeeCCCceEE
Confidence 001 11111222122 2222335778888776654322 33322 23579
Q ss_pred EecEEEEeCCCCCCCCC-CCCccccccCCCChHHHHHHHHHHHHHHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhh
Q 010827 191 EYDWLVLSLGAEPKLDV-VPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEE 269 (500)
Q Consensus 191 ~~d~lIlAtG~~p~~~~-i~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~ 269 (500)
.||+||||||++|..|. +||.++.. .+.+++..+... +++++|||+|.+|+|+|..|++++.+
T Consensus 144 ~~d~lIIATGs~p~~p~~i~G~~~~~---~~~~~~~~~~~~-------------~~~vvIIGgG~iG~E~A~~l~~~G~~ 207 (499)
T PTZ00052 144 TAKYILIATGGRPSIPEDVPGAKEYS---ITSDDIFSLSKD-------------PGKTLIVGASYIGLETAGFLNELGFD 207 (499)
T ss_pred ECCEEEEecCCCCCCCCCCCCcccee---ecHHHHhhhhcC-------------CCeEEEECCCHHHHHHHHHHHHcCCc
Confidence 99999999999999885 89865422 344444333221 67999999999999999999998877
Q ss_pred cCeEEEEecCCccCCCCCcchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeec
Q 010827 270 KGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQ 349 (500)
Q Consensus 270 ~~~vtlv~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~ 349 (500)
||++++ ..+++.+++...+.+++.|++.||++++++.+.+++..+ +.+.+.+.
T Consensus 208 ---Vtli~~-~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~-----------------------~~~~v~~~ 260 (499)
T PTZ00052 208 ---VTVAVR-SIPLRGFDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMD-----------------------DKIKVLFS 260 (499)
T ss_pred ---EEEEEc-CcccccCCHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcC-----------------------CeEEEEEC
Confidence 999998 466788889999999999999999999999999887643 33444432
Q ss_pred ccccCCCccEEeecEEEEecCCCCCCCCCCCCCCccCCCCCCCCCceEeCCCcccCCCCCEEEecccccccCCCCCCCCc
Q 010827 350 PAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPA 429 (500)
Q Consensus 350 ~~~~~~~~~~l~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~~~~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~ 429 (500)
+++++++|.||+++|++||++++... ..+++++++|++.+++. +| +.|+|||+|||+.. .+.
T Consensus 261 ------~g~~i~~D~vl~a~G~~pn~~~l~l~---~~g~~~~~~G~ii~~~~-~T-s~p~IyAiGDv~~~-------~~~ 322 (499)
T PTZ00052 261 ------DGTTELFDTVLYATGRKPDIKGLNLN---AIGVHVNKSNKIIAPND-CT-NIPNIFAVGDVVEG-------RPE 322 (499)
T ss_pred ------CCCEEEcCEEEEeeCCCCCccccCch---hcCcEECCCCCEeeCCC-cC-CCCCEEEEEEecCC-------Ccc
Confidence 45678999999999999998876421 22578888898777766 88 99999999999863 156
Q ss_pred hHHHHHHHHHHHHHHHHHHHC---CCCCCCceecCceeEEEec
Q 010827 430 TAQVAFQQADFAGWNLWAAIN---DRPLLPFRFQNLGEMMILG 469 (500)
Q Consensus 430 ~~~~A~~~g~~aa~~i~~~l~---~~~~~p~~~~~~~~~~~~G 469 (500)
++..|++||+.+|++|.+... +....|+..-...++.++|
T Consensus 323 l~~~A~~~g~~aa~ni~g~~~~~~~~~~~p~~ift~p~ia~vG 365 (499)
T PTZ00052 323 LTPVAIKAGILLARRLFKQSNEFIDYTFIPTTIFTPIEYGACG 365 (499)
T ss_pred cHHHHHHHHHHHHHHHhCCCCCcCccccCCeEEecCCcceeec
Confidence 889999999999999975321 1122233322234667777
No 43
>PRK12831 putative oxidoreductase; Provisional
Probab=100.00 E-value=7.4e-34 Score=293.95 Aligned_cols=310 Identities=18% Similarity=0.112 Sum_probs=209.4
Q ss_pred CCCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEE
Q 010827 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFF 155 (500)
Q Consensus 76 ~~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~ 155 (500)
....++|+|||||||||+||.+|++ .|++|+|||+.+.++..... ...........+.....+++++.+++++
T Consensus 137 ~~~~~~V~IIG~GpAGl~aA~~l~~------~G~~V~v~e~~~~~GG~l~~-gip~~~l~~~~~~~~~~~~~~~~gv~i~ 209 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAK------MGYDVTIFEALHEPGGVLVY-GIPEFRLPKETVVKKEIENIKKLGVKIE 209 (464)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHh------CCCeEEEEecCCCCCCeeee-cCCCccCCccHHHHHHHHHHHHcCCEEE
Confidence 3456899999999999999999999 68999999998764332210 0000011112234444566777899988
Q ss_pred EeeEEEEecCCCCCCCCCceeecCcEEEcCCc-cEEEecEEEEeCCC-CCCCCCCCCccccccCCCChHHHHHHHHHHHH
Q 010827 156 KDRVKLLCPSDHLGVNGPMACTHGGTVLLESG-LIVEYDWLVLSLGA-EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE 233 (500)
Q Consensus 156 ~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~d~lIlAtG~-~p~~~~i~G~~~~~~~~~~~~~~~~~~~~l~~ 233 (500)
.+....- .+..++. ..+.||+||||||+ .|+.+++||.+. ..+++..++.........
T Consensus 210 ~~~~v~~------------------~v~~~~~~~~~~~d~viiAtGa~~~~~l~ipG~~~--~gV~~~~~~l~~~~~~~~ 269 (464)
T PRK12831 210 TNVVVGK------------------TVTIDELLEEEGFDAVFIGSGAGLPKFMGIPGENL--NGVFSANEFLTRVNLMKA 269 (464)
T ss_pred cCCEECC------------------cCCHHHHHhccCCCEEEEeCCCCCCCCCCCCCcCC--cCcEEHHHHHHHHHhccc
Confidence 8753311 1222232 24579999999998 688899999652 123344444332211110
Q ss_pred HHH-hccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCCCCcchHHHHHHHHHhCCcEEEcCceEE
Q 010827 234 LER-RNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVR 312 (500)
Q Consensus 234 ~~~-~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~ 312 (500)
... .......+|+|+|||+|++|+|+|..+.+++.+ |+++++... ..++... .. .+.+++.||++++++.+.
T Consensus 270 ~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~---Vtlv~r~~~--~~m~a~~-~e-~~~a~~eGV~i~~~~~~~ 342 (464)
T PRK12831 270 YKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAE---VHIVYRRSE--EELPARV-EE-VHHAKEEGVIFDLLTNPV 342 (464)
T ss_pred ccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCE---EEEEeecCc--ccCCCCH-HH-HHHHHHcCCEEEecccce
Confidence 000 000112378999999999999999999999887 999998653 2222222 22 244678899999999999
Q ss_pred EEecCcc-ccccccCCCCCcccccccccCCcceeEe---ecccc-c--------CCCccEEeecEEEEecCCCCCCCCCC
Q 010827 313 CIRRVGE-FEASVKQPESGAIPNIAADKNSDKYILE---LQPAI-K--------GLESQIFEADLVLWTVGSKPLLPHVE 379 (500)
Q Consensus 313 ~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~---~~~~~-~--------~~~~~~l~~D~vi~a~G~~p~~~~~~ 379 (500)
++..+.+ .. .++.+. +...+ . .++..++++|.||+++|+.|+..++.
T Consensus 343 ~i~~~~~g~v--------------------~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~ 402 (464)
T PRK12831 343 EILGDENGWV--------------------KGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISS 402 (464)
T ss_pred EEEecCCCeE--------------------EEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCChhhhc
Confidence 9875321 00 112221 10000 0 12335799999999999999987775
Q ss_pred CCCCccCCCCCCCCCceEeCCC-cccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHCCC
Q 010827 380 PPNNRLHDLPLNARGQAETDET-LCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDR 452 (500)
Q Consensus 380 ~~~~~~~~~~~~~~g~i~vd~~-~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~ 452 (500)
.. .+++++.+|+|.||+. ++| +.|+|||+|||+.. +.++..|+.+|+.||.+|...|.++
T Consensus 403 ~~----~gl~~~~~G~i~vd~~~~~T-s~pgVfAaGD~~~g--------~~~v~~Ai~~G~~AA~~I~~~L~~~ 463 (464)
T PRK12831 403 TT----KGLKINKRGCIVADEETGLT-SKEGVFAGGDAVTG--------AATVILAMGAGKKAAKAIDEYLSKK 463 (464)
T ss_pred cc----CCceECCCCcEEECCCCCcc-CCCCEEEeCCCCCC--------chHHHHHHHHHHHHHHHHHHHhcCC
Confidence 42 2477888899999987 888 99999999999876 6788999999999999999999764
No 44
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=7.6e-33 Score=288.62 Aligned_cols=296 Identities=18% Similarity=0.233 Sum_probs=214.1
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcC------CCCcccC-------c---chh-----hhc------c
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQ------SERFVFK-------P---MLY-----ELL------S 131 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~------~~~~~~~-------~---~~~-----~~~------~ 131 (500)
.+||+||||||||++||.++++ .|.+|+|||+ ...++.. | ++. ..+ .
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~------~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~ 77 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQ------LGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADH 77 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHh------CCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhc
Confidence 4899999999999999999999 6889999998 1211111 1 000 000 0
Q ss_pred ccccCccc------------------cccHHHHhccCCcEEEEeeEEEEecCCCCCCCCCceeecCcEEEcC--CccEEE
Q 010827 132 GEVDAWEI------------------APRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLE--SGLIVE 191 (500)
Q Consensus 132 g~~~~~~~------------------~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~--~g~~~~ 191 (500)
| ...... ...+..+++..+++++.+++..++.... .+++... ++..++
T Consensus 78 G-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~-----------~~~v~v~~~~~~~~~ 145 (475)
T PRK06327 78 G-IHVDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDA-----------GYEIKVTGEDETVIT 145 (475)
T ss_pred C-ccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCC-----------CCEEEEecCCCeEEE
Confidence 1 000010 0122344555689999998887764332 1244442 345899
Q ss_pred ecEEEEeCCCCCCCCCCCCccccccCCCChHHHHHHHHHHHHHHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcC
Q 010827 192 YDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKG 271 (500)
Q Consensus 192 ~d~lIlAtG~~p~~~~i~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~ 271 (500)
||+||||||++|..++..+... ..+.+.++...+... +++|+|||+|.+|+|+|..+++++.+
T Consensus 146 ~d~lViATGs~p~~~p~~~~~~--~~~~~~~~~~~~~~~-------------~~~vvVvGgG~~g~E~A~~l~~~g~~-- 208 (475)
T PRK06327 146 AKHVIIATGSEPRHLPGVPFDN--KIILDNTGALNFTEV-------------PKKLAVIGAGVIGLELGSVWRRLGAE-- 208 (475)
T ss_pred eCEEEEeCCCCCCCCCCCCCCC--ceEECcHHHhccccc-------------CCeEEEECCCHHHHHHHHHHHHcCCe--
Confidence 9999999999996543222111 112233333322211 68999999999999999999988776
Q ss_pred eEEEEecCCccCCCCCcchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeeccc
Q 010827 272 IVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPA 351 (500)
Q Consensus 272 ~vtlv~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~ 351 (500)
|+++++.+.+++.+++++...+.+.|++.||++++++.|++++.++ +.+.+.+.+
T Consensus 209 -Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~-----------------------~~v~v~~~~- 263 (475)
T PRK06327 209 -VTILEALPAFLAAADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGG-----------------------KGVSVAYTD- 263 (475)
T ss_pred -EEEEeCCCccCCcCCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcC-----------------------CEEEEEEEe-
Confidence 9999999999888888899999999999999999999999998654 445554321
Q ss_pred ccCCCccEEeecEEEEecCCCCCCCCCCCCCCccCCCCCCCCCceEeCCCcccCCCCCEEEecccccccCCCCCCCCchH
Q 010827 352 IKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATA 431 (500)
Q Consensus 352 ~~~~~~~~l~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~~~~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~ 431 (500)
.+++.+++++|.||+++|.+|+.+++... ..+++++++|++.||+++|| +.|+||++|||+.. +.++
T Consensus 264 -~~g~~~~i~~D~vl~a~G~~p~~~~l~~~---~~g~~~~~~G~i~vd~~~~T-s~~~VyA~GD~~~~--------~~~~ 330 (475)
T PRK06327 264 -ADGEAQTLEVDKLIVSIGRVPNTDGLGLE---AVGLKLDERGFIPVDDHCRT-NVPNVYAIGDVVRG--------PMLA 330 (475)
T ss_pred -CCCceeEEEcCEEEEccCCccCCCCCCcH---hhCceeCCCCeEeECCCCcc-CCCCEEEEEeccCC--------cchH
Confidence 11223579999999999999998754321 22577888999999999999 99999999999975 5788
Q ss_pred HHHHHHHHHHHHHHHH
Q 010827 432 QVAFQQADFAGWNLWA 447 (500)
Q Consensus 432 ~~A~~~g~~aa~~i~~ 447 (500)
..|..||+.+|.+|.+
T Consensus 331 ~~A~~~G~~aa~~i~g 346 (475)
T PRK06327 331 HKAEEEGVAVAERIAG 346 (475)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 9999999999999975
No 45
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=100.00 E-value=1.4e-32 Score=291.64 Aligned_cols=298 Identities=19% Similarity=0.214 Sum_probs=210.0
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCC-CC----------cccCcchhh-----hc--------cccc
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQS-ER----------FVFKPMLYE-----LL--------SGEV 134 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~-~~----------~~~~~~~~~-----~~--------~g~~ 134 (500)
.+||+|||+||+|+.||..+++ .|.+|+|||+. +. .+.+.++.. .+ .|..
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~------~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~ 189 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAME------RGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIY 189 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHH------CCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCee
Confidence 5799999999999999999999 68899999974 21 111111100 00 0100
Q ss_pred ------------------------cCccc-----------cccHHHHhccC-------CcEEEEeeEEEEecCCCCCCCC
Q 010827 135 ------------------------DAWEI-----------APRFADLLANT-------GVQFFKDRVKLLCPSDHLGVNG 172 (500)
Q Consensus 135 ------------------------~~~~~-----------~~~~~~~~~~~-------~v~~~~~~v~~i~~~~~~~~~~ 172 (500)
++..+ ...+...++.. +++++.+...-+++.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~------- 262 (659)
T PTZ00153 190 TNAFKNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKN------- 262 (659)
T ss_pred eccccccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCC-------
Confidence 00000 01122233333 367777665444432
Q ss_pred CceeecCcEEEc-CCccEEEecEEEEeCCCCCCCCCCCCccccccCCCChHHHHHHHHHHHHHHHhccCCCCccEEEEEC
Q 010827 173 PMACTHGGTVLL-ESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVG 251 (500)
Q Consensus 173 ~~~~~~~~~v~~-~~g~~~~~d~lIlAtG~~p~~~~i~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~V~VvG 251 (500)
++.. .++..+.||+||||||++|..|++++.+. ..+.+.+++..+... +++|+|||
T Consensus 263 --------~v~v~~~g~~i~ad~lIIATGS~P~~P~~~~~~~--~~V~ts~d~~~l~~l-------------pk~VvIVG 319 (659)
T PTZ00153 263 --------TIKSEKSGKEFKVKNIIIATGSTPNIPDNIEVDQ--KSVFTSDTAVKLEGL-------------QNYMGIVG 319 (659)
T ss_pred --------eEEEccCCEEEECCEEEEcCCCCCCCCCCCCCCC--CcEEehHHhhhhhhc-------------CCceEEEC
Confidence 3332 35568999999999999999887666432 223455665554332 68999999
Q ss_pred CChhHHHHHHHHHHHHhhcCeEEEEecCCccCCCCCcchHHHHHHHH-HhCCcEEEcCceEEEEecCccccccccCCCCC
Q 010827 252 CGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVL-SARKVQLVLGYFVRCIRRVGEFEASVKQPESG 330 (500)
Q Consensus 252 gG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~~~~~~~~~~~~~l-~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~ 330 (500)
+|.+|+|+|..+++.+.+ ||++++.+.+++.++++..+.+.+.+ ++.||++++++.|++++.+++.
T Consensus 320 gG~iGvE~A~~l~~~G~e---VTLIe~~~~ll~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~---------- 386 (659)
T PTZ00153 320 MGIIGLEFMDIYTALGSE---VVSFEYSPQLLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGN---------- 386 (659)
T ss_pred CCHHHHHHHHHHHhCCCe---EEEEeccCcccccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCc----------
Confidence 999999999999988876 99999999999999999988888875 6799999999999999864310
Q ss_pred cccccccccCCcceeEeecccccCC---------CccEEeecEEEEecCCCCCCCCCCCCCCccCCCCCCCCCceEeCCC
Q 010827 331 AIPNIAADKNSDKYILELQPAIKGL---------ESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDET 401 (500)
Q Consensus 331 ~~~~~~~~~~~~~v~l~~~~~~~~~---------~~~~l~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~~~~g~i~vd~~ 401 (500)
..+.+.+.+...+. +.+++++|.||+|+|++||++.+... ..+++++ +|+|.||++
T Consensus 387 -----------~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~---~~gi~~~-~G~I~VDe~ 451 (659)
T PTZ00153 387 -----------QPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLD---KLKIQMK-RGFVSVDEH 451 (659)
T ss_pred -----------eEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCccCCch---hcCCccc-CCEEeECCC
Confidence 12555432111010 12479999999999999998876421 1246665 499999999
Q ss_pred cccCC-----CCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 010827 402 LCVKG-----HPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAA 448 (500)
Q Consensus 402 ~~t~~-----~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 448 (500)
|||.. +|+|||+|||+.. +.+.+.|..||+.+|++|.+.
T Consensus 452 lqTs~~~~~~v~~IYAiGDv~g~--------~~La~~A~~qg~~aa~ni~g~ 495 (659)
T PTZ00153 452 LRVLREDQEVYDNIFCIGDANGK--------QMLAHTASHQALKVVDWIEGK 495 (659)
T ss_pred CCcCCCCCCCCCCEEEEEecCCC--------ccCHHHHHHHHHHHHHHHcCC
Confidence 99931 6999999999875 678899999999999999753
No 46
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=100.00 E-value=2.1e-33 Score=291.54 Aligned_cols=352 Identities=17% Similarity=0.083 Sum_probs=229.6
Q ss_pred cccc--ccccCCCC--ccc-cchHHHH--HHHHhhhccccccccccccccccCCCCCCCCCCCCeEEEECCcHHHHHHHH
Q 010827 24 KLFP--FSSKSYLS--FKT-CRKNRFI--SFAASNSSGRNGDLVVTSEDESASQTYTWPDKKKPRICILGGGFGGLYTAL 96 (500)
Q Consensus 24 ~~~~--~~~~~~~~--~~~-~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~AGl~aA~ 96 (500)
+||| .+.++..+ |+. |.|.... ..+.|..++....+....... . ..+....++|+|||||||||++|.
T Consensus 83 ~p~~~~~g~vc~~~~~C~~~C~~~~~~~~v~i~~l~~~~~~~~~~~~~~~----~-~~~~~~~~~VvIIGgGpaGl~aA~ 157 (457)
T PRK11749 83 NPLPAVCGRVCPQERLCEGACVRGKKGEPVAIGRLERYITDWAMETGWVL----F-KRAPKTGKKVAVIGAGPAGLTAAH 157 (457)
T ss_pred CCchhhhcCcCCCccCHHHHhcCCCCCCCcchHHHHHHHHHHHHhcCCCC----C-CCCccCCCcEEEECCCHHHHHHHH
Confidence 4444 33444554 333 4443222 256777777666554332110 0 122345689999999999999999
Q ss_pred HhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEEeeEEEEecCCCCCCCCCcee
Q 010827 97 RLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMAC 176 (500)
Q Consensus 97 ~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~ 176 (500)
.|++ .|++|+|||+.+.+.....+ ..+......++.....+++++.+++++.+.....
T Consensus 158 ~l~~------~g~~V~lie~~~~~gG~l~~--gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~-------------- 215 (457)
T PRK11749 158 RLAR------KGYDVTIFEARDKAGGLLRY--GIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGR-------------- 215 (457)
T ss_pred HHHh------CCCeEEEEccCCCCCcEeec--cCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECC--------------
Confidence 9998 68999999998865332111 0111112233444555667778899988754311
Q ss_pred ecCcEEEcCCccEEEecEEEEeCCCC-CCCCCCCCccccccCCCChHHHHHHHHHHHHHHHhccCCCCccEEEEECCChh
Q 010827 177 THGGTVLLESGLIVEYDWLVLSLGAE-PKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYS 255 (500)
Q Consensus 177 ~~~~~v~~~~g~~~~~d~lIlAtG~~-p~~~~i~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~V~VvGgG~~ 255 (500)
.++.++. .+.||+||+|||+. |..+.+||.+. ..+.+..+......... .......+++|+|||+|++
T Consensus 216 ----~v~~~~~-~~~~d~vvlAtGa~~~~~~~i~G~~~--~gv~~~~~~l~~~~~~~----~~~~~~~g~~VvViGgG~~ 284 (457)
T PRK11749 216 ----DITLDEL-RAGYDAVFIGTGAGLPRFLGIPGENL--GGVYSAVDFLTRVNQAV----ADYDLPVGKRVVVIGGGNT 284 (457)
T ss_pred ----ccCHHHH-HhhCCEEEEccCCCCCCCCCCCCccC--CCcEEHHHHHHHHhhcc----ccccCCCCCeEEEECCCHH
Confidence 1223233 37899999999985 77778888642 12222222222111100 0001123789999999999
Q ss_pred HHHHHHHHHHHHhhcCeEEEEecCCccCCCCCcchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCccccc
Q 010827 256 GVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNI 335 (500)
Q Consensus 256 g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~ 335 (500)
|+|+|..+.+.+.+. |+++++.... .++. .....+.+++.||++++++.+.++..+++..
T Consensus 285 g~e~A~~l~~~G~~~--Vtlv~~~~~~--~~~~--~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~-------------- 344 (457)
T PRK11749 285 AMDAARTAKRLGAES--VTIVYRRGRE--EMPA--SEEEVEHAKEEGVEFEWLAAPVEILGDEGRV-------------- 344 (457)
T ss_pred HHHHHHHHHHcCCCe--EEEeeecCcc--cCCC--CHHHHHHHHHCCCEEEecCCcEEEEecCCce--------------
Confidence 999999998877632 9999986542 1111 1224567889999999999999998654210
Q ss_pred ccccCCcceeEeecc----cc-------cCCCccEEeecEEEEecCCCCCCCCCCCCCCccCCCCCCCCCceEeCC-Ccc
Q 010827 336 AADKNSDKYILELQP----AI-------KGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDE-TLC 403 (500)
Q Consensus 336 ~~~~~~~~v~l~~~~----~~-------~~~~~~~l~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~~~~g~i~vd~-~~~ 403 (500)
.++++.... .. ..++++++++|.||+++|++|+..++... .++.++.+|++.||+ .++
T Consensus 345 ------~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~~----~gl~~~~~g~i~vd~~~~~ 414 (457)
T PRK11749 345 ------TGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTT----PGLELNRWGTIIADDETGR 414 (457)
T ss_pred ------EEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhhccc----cCccCCCCCCEEeCCCCCc
Confidence 123332100 00 11255689999999999999997765432 247788899999998 788
Q ss_pred cCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHCCC
Q 010827 404 VKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDR 452 (500)
Q Consensus 404 t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~ 452 (500)
| +.|+||++|||+.. ++++..|+.+|+.+|.+|...|.++
T Consensus 415 T-s~~~VfA~GD~~~~--------~~~~~~A~~~G~~aA~~I~~~l~g~ 454 (457)
T PRK11749 415 T-SLPGVFAGGDIVTG--------AATVVWAVGDGKDAAEAIHEYLEGA 454 (457)
T ss_pred c-CCCCEEEeCCcCCC--------chHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8 99999999999964 5788999999999999999999865
No 47
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=100.00 E-value=3.7e-33 Score=288.34 Aligned_cols=304 Identities=21% Similarity=0.133 Sum_probs=206.4
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEE
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFK 156 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~ 156 (500)
...++|+|||||||||+||..|++ .|++|+|||+.+..++...+ . ++......++.....+.+.+.+++++.
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~------~G~~V~vie~~~~~GG~l~~-g-ip~~~~~~~~~~~~~~~l~~~gv~~~~ 202 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAK------AGHSVTVFEALHKPGGVVTY-G-IPEFRLPKEIVVTEIKTLKKLGVTFRM 202 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHH------CCCcEEEEecCCCCCcEeee-c-CCCccCCHHHHHHHHHHHHhCCcEEEe
Confidence 456899999999999999999998 68999999998764332111 0 111111122333334556677899988
Q ss_pred eeEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCC-CCCCCCCCCccccccCCCChHHHHHHHHHHHHHH
Q 010827 157 DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA-EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELE 235 (500)
Q Consensus 157 ~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~-~p~~~~i~G~~~~~~~~~~~~~~~~~~~~l~~~~ 235 (500)
+..... .+++++. ...||+||||||+ .|..+.+||.+. ..+.+..++..........+
T Consensus 203 ~~~v~~------------------~v~~~~~-~~~yd~viiAtGa~~p~~~~ipG~~~--~gv~~~~~~l~~~~~~~~~~ 261 (449)
T TIGR01316 203 NFLVGK------------------TATLEEL-FSQYDAVFIGTGAGLPKLMNIPGEEL--CGVYSANDFLTRANLMKAYE 261 (449)
T ss_pred CCccCC------------------cCCHHHH-HhhCCEEEEeCCCCCCCcCCCCCCCC--CCcEEHHHHHHHHhhccccc
Confidence 753211 2333333 3579999999998 688899999642 12233333332211110000
Q ss_pred --HhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCCCCcchHHHHHHHHHhCCcEEEcCceEEE
Q 010827 236 --RRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRC 313 (500)
Q Consensus 236 --~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~ 313 (500)
........+|+|+|||+|++|+|+|..+.+.+.+ |+++++.... .+ .......+.+++.||++++++.+++
T Consensus 262 ~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~---Vtlv~~~~~~--~~--~~~~~~~~~l~~~GV~~~~~~~~~~ 334 (449)
T TIGR01316 262 FPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAE---VHCLYRRTRE--DM--TARVEEIAHAEEEGVKFHFLCQPVE 334 (449)
T ss_pred ccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCE---EEEEeecCcc--cC--CCCHHHHHHHHhCCCEEEeccCcEE
Confidence 0000112368999999999999999999998887 9999987542 11 1223344678899999999999999
Q ss_pred EecCccccccccCCCCCcccccccccCCcceeEee---c-ccc--------cCCCccEEeecEEEEecCCCCCCCCCCCC
Q 010827 314 IRRVGEFEASVKQPESGAIPNIAADKNSDKYILEL---Q-PAI--------KGLESQIFEADLVLWTVGSKPLLPHVEPP 381 (500)
Q Consensus 314 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~---~-~~~--------~~~~~~~l~~D~vi~a~G~~p~~~~~~~~ 381 (500)
+..+++.. + ..+.+.. . ... ..++..++++|.||+++|+.|+..+++..
T Consensus 335 i~~~~~g~-------v------------~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~ 395 (449)
T TIGR01316 335 IIGDEEGN-------V------------RAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETT 395 (449)
T ss_pred EEEcCCCe-------E------------EEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhcc
Confidence 97532100 0 1222210 0 000 01234579999999999999998777654
Q ss_pred CCccCCCCCCCCCceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 010827 382 NNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAI 449 (500)
Q Consensus 382 ~~~~~~~~~~~~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l 449 (500)
+++++.+|+|.||++++| +.|+|||+|||+.. +.++..|+.+|+.+|.+|...|
T Consensus 396 -----gl~~~~~G~i~vd~~~~T-s~~~VfA~GD~~~g--------~~~v~~Ai~~G~~AA~~I~~~L 449 (449)
T TIGR01316 396 -----RLKTSERGTIVVDEDQRT-SIPGVFAGGDIILG--------AATVIRAMGQGKRAAKSINEYL 449 (449)
T ss_pred -----CcccCCCCeEEeCCCCcc-CCCCEEEecCCCCC--------cHHHHHHHHHHHHHHHHHHhhC
Confidence 477888899999999999 99999999999975 6788999999999999998764
No 48
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=100.00 E-value=2.3e-33 Score=294.80 Aligned_cols=294 Identities=20% Similarity=0.226 Sum_probs=213.5
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCc----chhhhccc-cccCccccccHHHHhccCC
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP----MLYELLSG-EVDAWEIAPRFADLLANTG 151 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~----~~~~~~~g-~~~~~~~~~~~~~~~~~~~ 151 (500)
...+||+|||||||||+||.+|++ .|++|+||++. ++.+. .+..+..- ......+...+.+++++++
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~------~G~~v~li~~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~g 281 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAAR------KGLRTAMVAER--IGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYP 281 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHH------CCCcEEEEecC--CCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhC
Confidence 446899999999999999999999 68999999752 22222 11111110 1122334556667777789
Q ss_pred cEEEEe-eEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCCCCCCCCCccccccC---CCChHHHHHH
Q 010827 152 VQFFKD-RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFP---FSTLEDACRV 227 (500)
Q Consensus 152 v~~~~~-~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p~~~~i~G~~~~~~~---~~~~~~~~~~ 227 (500)
++++.+ +|..++..... +.+.+.++..+.||+||+|||+.|+.|++||..++... .+...+
T Consensus 282 v~i~~~~~V~~I~~~~~~-----------~~v~~~~g~~i~~d~lIlAtGa~~~~~~ipG~~~~~~~~v~~~~~~~---- 346 (515)
T TIGR03140 282 IDLMENQRAKKIETEDGL-----------IVVTLESGEVLKAKSVIVATGARWRKLGVPGEKEYIGKGVAYCPHCD---- 346 (515)
T ss_pred CeEEcCCEEEEEEecCCe-----------EEEEECCCCEEEeCEEEECCCCCcCCCCCCCHHHcCCCeEEEeeccC----
Confidence 999885 78888765431 35666777789999999999999998999985332110 010001
Q ss_pred HHHHHHHHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCCCCcchHHHHHHHHHh-CCcEEE
Q 010827 228 DRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSA-RKVQLV 306 (500)
Q Consensus 228 ~~~l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~~~~~~~~~~~~~l~~-~gV~i~ 306 (500)
..+ ..+++|+|||+|++|+|+|..|+..+.+ |+++++.+.+. ....+.+.+++ .||+++
T Consensus 347 -~~~----------~~~k~VvViGgG~~g~E~A~~L~~~g~~---Vtli~~~~~l~------~~~~l~~~l~~~~gV~i~ 406 (515)
T TIGR03140 347 -GPF----------FKGKDVAVIGGGNSGIEAAIDLAGIVRH---VTVLEFADELK------ADKVLQDKLKSLPNVDIL 406 (515)
T ss_pred -hhh----------cCCCEEEEECCcHHHHHHHHHHHhcCcE---EEEEEeCCcCC------hhHHHHHHHhcCCCCEEE
Confidence 000 0168999999999999999999887766 99999877653 23456677776 699999
Q ss_pred cCceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccEEeecEEEEecCCCCCCCCCCCCCCccC
Q 010827 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLH 386 (500)
Q Consensus 307 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~p~~~~~~~~~~~~~ 386 (500)
+++.++++..+++.. ..+.+. +.. .++.+++++|.||+++|.+|++++++..
T Consensus 407 ~~~~v~~i~~~~~~v--------------------~~v~~~--~~~-~~~~~~i~~D~vi~a~G~~Pn~~~l~~~----- 458 (515)
T TIGR03140 407 TSAQTTEIVGDGDKV--------------------TGIRYQ--DRN-SGEEKQLDLDGVFVQIGLVPNTEWLKDA----- 458 (515)
T ss_pred ECCeeEEEEcCCCEE--------------------EEEEEE--ECC-CCcEEEEEcCEEEEEeCCcCCchHHhhh-----
Confidence 999999998753110 123333 111 1234679999999999999999888642
Q ss_pred CCCCCCCCceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHC
Q 010827 387 DLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIN 450 (500)
Q Consensus 387 ~~~~~~~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 450 (500)
++++.+|+|.||+++|| +.|+|||+|||+..+ .+++..|+.+|..||.+|..++.
T Consensus 459 -~~~~~~G~I~vd~~~~T-s~p~IyAaGDv~~~~-------~~~~~~A~~~G~~Aa~~i~~~~~ 513 (515)
T TIGR03140 459 -VELNRRGEIVIDERGRT-SVPGIFAAGDVTTVP-------YKQIIIAMGEGAKAALSAFDYLI 513 (515)
T ss_pred -cccCCCCeEEECCCCCC-CCCCEEEcccccCCc-------cceEEEEEccHHHHHHHHHHHHh
Confidence 56777899999999999 999999999999852 24667899999999999998764
No 49
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=100.00 E-value=4.8e-33 Score=272.20 Aligned_cols=317 Identities=22% Similarity=0.310 Sum_probs=254.6
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCc-chhhhccccccCccccccHHHHhccCCcEEEEe
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP-MLYELLSGEVDAWEIAPRFADLLANTGVQFFKD 157 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (500)
.++++|||+|++|.-|+.++++.++ -.+++++-++..+++.+ .+.....- ....+.....++++.++++++.+
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~----~~ri~l~~~~~~~pydr~~Ls~~~~~--~~~~~a~r~~e~Yke~gIe~~~~ 147 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGF----TERIALVKREYLLPYDRARLSKFLLT--VGEGLAKRTPEFYKEKGIELILG 147 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCC----CcceEEEeccccCcccchhcccceee--ccccccccChhhHhhcCceEEEc
Confidence 5789999999999999999999753 45888988888877743 33322211 12334445556788889999986
Q ss_pred -eEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCCCCCCCCCcc-ccccCCCChHHHHHHHHHHHHHH
Q 010827 158 -RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAA-EFAFPFSTLEDACRVDRKLSELE 235 (500)
Q Consensus 158 -~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p~~~~i~G~~-~~~~~~~~~~~~~~~~~~l~~~~ 235 (500)
.|+.+|...+ ++...+|+.+.|++|+||||+.++.+++||.+ +++..++..+++..+...+..
T Consensus 148 t~v~~~D~~~K-------------~l~~~~Ge~~kys~LilATGs~~~~l~~pG~~~~nv~~ireieda~~l~~~~~~-- 212 (478)
T KOG1336|consen 148 TSVVKADLASK-------------TLVLGNGETLKYSKLIIATGSSAKTLDIPGVELKNVFYLREIEDANRLVAAIQL-- 212 (478)
T ss_pred ceeEEeecccc-------------EEEeCCCceeecceEEEeecCccccCCCCCccccceeeeccHHHHHHHHHHhcc--
Confidence 9999999887 69999999999999999999999999999986 566777788887776665433
Q ss_pred HhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCC-CCcchHHHHHHHHHhCCcEEEcCceEEEE
Q 010827 236 RRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPT-GTPGNREAALKVLSARKVQLVLGYFVRCI 314 (500)
Q Consensus 236 ~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~-~~~~~~~~~~~~l~~~gV~i~~~~~v~~i 314 (500)
.++|+++|+|..|+|+|..|.....+ ||+|++.+.++++ +.+.+.+.++..+++.||++..++.+.++
T Consensus 213 --------~~~vV~vG~G~ig~Evaa~l~~~~~~---VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l 281 (478)
T KOG1336|consen 213 --------GGKVVCVGGGFIGMEVAAALVSKAKS---VTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSL 281 (478)
T ss_pred --------CceEEEECchHHHHHHHHHHHhcCce---EEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeec
Confidence 46899999999999999999887665 9999999999885 68899999999999999999999999999
Q ss_pred ecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccEEeecEEEEecCCCCCCCCCCCCCCccCCCCCCCCC
Q 010827 315 RRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARG 394 (500)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~~~~g 394 (500)
+.+.++ ....+.+ .++.++++|+||+.+|-+|++++++. +..++..|
T Consensus 282 ~~~~~G---------------------ev~~V~l------~dg~~l~adlvv~GiG~~p~t~~~~~------g~~~~~~G 328 (478)
T KOG1336|consen 282 EGNSDG---------------------EVSEVKL------KDGKTLEADLVVVGIGIKPNTSFLEK------GILLDSKG 328 (478)
T ss_pred ccCCCC---------------------cEEEEEe------ccCCEeccCeEEEeeccccccccccc------cceecccC
Confidence 886531 1222333 28899999999999999999999975 35688999
Q ss_pred ceEeCCCcccCCCCCEEEecccccccCCC--CCCCCchHHHHHHHHHHHHHHHHHHHCC-CCCCCceecC
Q 010827 395 QAETDETLCVKGHPRIFALGDSSALRDSS--GRPLPATAQVAFQQADFAGWNLWAAIND-RPLLPFRFQN 461 (500)
Q Consensus 395 ~i~vd~~~~t~~~~~vyaiGD~~~~~~~~--~~~~~~~~~~A~~~g~~aa~~i~~~l~~-~~~~p~~~~~ 461 (500)
.|.||+.||| +.|||||+||++..+.+. .......+..|+.+|+.+...|...-.. .+..||.|+.
T Consensus 329 ~i~V~~~f~t-~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~av~ai~~~~~~~~~~lPyf~t~ 397 (478)
T KOG1336|consen 329 GIKVDEFFQT-SVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGRQAVKAIKMAPQDAYDYLPYFYTR 397 (478)
T ss_pred CEeehhceee-ccCCcccccceeecccccccccccchHHHHHHHHHHhhhhhhhccCcccccccchHHHH
Confidence 9999999999 899999999999987652 1122577888999999888887654333 3467777764
No 50
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=100.00 E-value=3.1e-33 Score=303.10 Aligned_cols=303 Identities=17% Similarity=0.144 Sum_probs=203.1
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEE
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFK 156 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~ 156 (500)
...++|+|||||||||+||..|++ .|++|+|||+.+.++.... ..+++...+.+......+++...++++..
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar------~G~~VtV~Ek~~~~GG~lr--~~IP~~Rlp~evL~~die~l~~~GVe~~~ 608 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLAR------AGHPVTVFEREENAGGVVK--NIIPQFRIPAELIQHDIEFVKAHGVKFEF 608 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHH------cCCeEEEEecccccCccee--eecccccccHHHHHHHHHHHHHcCCEEEe
Confidence 456899999999999999999999 6999999999887544321 11222222222333334556677899988
Q ss_pred eeEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCC-CCCCCCCccccccCCCChHHHHHHHHHHHHHH
Q 010827 157 DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEP-KLDVVPGAAEFAFPFSTLEDACRVDRKLSELE 235 (500)
Q Consensus 157 ~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p-~~~~i~G~~~~~~~~~~~~~~~~~~~~l~~~~ 235 (500)
+....+ ..++.....||+||||||+++ ..+.+||.++.++ +..++... ....
T Consensus 609 gt~Vdi--------------------~le~L~~~gYDaVILATGA~~~~~l~IpG~~~gV~---saldfL~~---~k~~- 661 (1019)
T PRK09853 609 GCSPDL--------------------TVEQLKNEGYDYVVVAIGADKNGGLKLEGGNQNVI---KALPFLEE---YKNK- 661 (1019)
T ss_pred CceeEE--------------------EhhhheeccCCEEEECcCCCCCCCCCCCCccCCce---ehHHHHHH---Hhhh-
Confidence 743222 222334567999999999974 5567888653332 22222111 1000
Q ss_pred HhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCc-cCCCCCcchHHHHHHHHHhCCcEEEcCceEEEE
Q 010827 236 RRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETT-ICPTGTPGNREAALKVLSARKVQLVLGYFVRCI 314 (500)
Q Consensus 236 ~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~-~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i 314 (500)
......+|+|+|||||++|+|+|..+.+.+... .|+++.+... .++. ..+.+.+.+ +.||++++...+.++
T Consensus 662 --~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGak-eVTLVyRr~~~~MPA----~~eEle~Al-eeGVe~~~~~~p~~I 733 (1019)
T PRK09853 662 --GTALKLGKHVVVVGGGNTAMDAARAALRVPGVE-KVTVVYRRTKQEMPA----WREEYEEAL-EDGVEFKELLNPESF 733 (1019)
T ss_pred --cccccCCCEEEEECCChHHHHHHHHHHhcCCCc-eEEEEEccCcccccc----cHHHHHHHH-HcCCEEEeCCceEEE
Confidence 001123789999999999999999887764311 2999998753 3332 233344444 579999999999998
Q ss_pred ecCccccccccCCCCCcccc-cccccCCcceeEeecccccCCCccEEeecEEEEecCCCCCCCCCCCCCCccCCCCCCCC
Q 010827 315 RRVGEFEASVKQPESGAIPN-IAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNAR 393 (500)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~~~~ 393 (500)
..++.. +..+. +......+..... ..+++.++++|.||+|+|.+|+.+++... +++++.+
T Consensus 734 ~~dG~l---------~~~~~~lg~~d~~Gr~~~v-----~tg~~~~I~aD~VIvAIG~~Pntelle~~-----GL~ld~~ 794 (1019)
T PRK09853 734 DADGTL---------TCRVMKLGEPDESGRRRPV-----ETGETVTLEADTVITAIGEQVDTELLKAN-----GIPLDKK 794 (1019)
T ss_pred EcCCcE---------EEEEEEeecccCCCceEEe-----eCCCeEEEEeCEEEECCCCcCChhHHHhc-----CccccCC
Confidence 743210 00000 0000000111111 12356789999999999999999888654 4777888
Q ss_pred CceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHC
Q 010827 394 GQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIN 450 (500)
Q Consensus 394 g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 450 (500)
|++.||++++| +.|+|||+|||+.. +.++..|+.+|+.||.+|.+.+.
T Consensus 795 G~I~VDetlqT-s~pgVFAaGD~a~G--------p~tvv~Ai~qGr~AA~nI~~~~~ 842 (1019)
T PRK09853 795 GWPVVDANGET-SLTNVYMIGDVQRG--------PSTIVAAIADARRAADAILSREG 842 (1019)
T ss_pred CCEEeCCCccc-CCCCEEEEeccccC--------chHHHHHHHHHHHHHHHHhhhcC
Confidence 99999999999 99999999999976 67899999999999999998776
No 51
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=100.00 E-value=9e-33 Score=292.37 Aligned_cols=293 Identities=19% Similarity=0.198 Sum_probs=206.2
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhh---hcccc--ccCccccccHHHHhccCCcE
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYE---LLSGE--VDAWEIAPRFADLLANTGVQ 153 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~---~~~g~--~~~~~~~~~~~~~~~~~~v~ 153 (500)
.+||+|||||||||+||.+|++ +|++|+|||++. ++....... ..++. .....+...++..+++.+++
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar------~g~~V~liE~~~-~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~ 76 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGR------AKLDTLIIEKDD-FGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVK 76 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHH------CCCCEEEEecCC-CCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCE
Confidence 4899999999999999999999 689999999964 332211110 01121 12234455566677778999
Q ss_pred EEEeeEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCCCCCCCCCcccccc---CCCChHHHHHHHHH
Q 010827 154 FFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAF---PFSTLEDACRVDRK 230 (500)
Q Consensus 154 ~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p~~~~i~G~~~~~~---~~~~~~~~~~~~~~ 230 (500)
++.++|+.++...+. +.+...++ .+.+|+||||||++|+.|++||.+.+.. .++...+. .
T Consensus 77 ~~~~~V~~i~~~~~~-----------~~V~~~~g-~~~a~~lVlATGa~p~~~~ipG~~~~~~~~v~~~~~~~~-----~ 139 (555)
T TIGR03143 77 FLQAEVLDVDFDGDI-----------KTIKTARG-DYKTLAVLIATGASPRKLGFPGEEEFTGRGVAYCATCDG-----E 139 (555)
T ss_pred EeccEEEEEEecCCE-----------EEEEecCC-EEEEeEEEECCCCccCCCCCCCHHHhCCceEEEEeecCh-----h
Confidence 988889888765431 24555554 6899999999999999999999643211 01111110 0
Q ss_pred HHHHHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCCCCcchHHHHHHHHHhCCcEEEcCce
Q 010827 231 LSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYF 310 (500)
Q Consensus 231 l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~ 310 (500)
. ..+++|+|||||++|+|+|..|++++.+ |+++++.+.+.. . .....+.+++.||++++++.
T Consensus 140 ~----------~~g~~VvVIGgG~~g~E~A~~L~~~g~~---Vtli~~~~~~~~--~---~~~~~~~~~~~gV~i~~~~~ 201 (555)
T TIGR03143 140 F----------FTGMDVFVIGGGFAAAEEAVFLTRYASK---VTVIVREPDFTC--A---KLIAEKVKNHPKIEVKFNTE 201 (555)
T ss_pred h----------cCCCEEEEECCCHHHHHHHHHHHccCCE---EEEEEeCCcccc--C---HHHHHHHHhCCCcEEEeCCE
Confidence 0 1168999999999999999999888776 999999876421 1 22233344557999999999
Q ss_pred EEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccE--EeecE----EEEecCCCCCCCCCCCCCCc
Q 010827 311 VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQI--FEADL----VLWTVGSKPLLPHVEPPNNR 384 (500)
Q Consensus 311 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~--l~~D~----vi~a~G~~p~~~~~~~~~~~ 384 (500)
|+++..++.. ..+.+... .+++..+ +++|. ||+++|++|++.+++.
T Consensus 202 V~~i~~~~~v---------------------~~v~~~~~---~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~---- 253 (555)
T TIGR03143 202 LKEATGDDGL---------------------RYAKFVNN---VTGEITEYKAPKDAGTFGVFVFVGYAPSSELFKG---- 253 (555)
T ss_pred EEEEEcCCcE---------------------EEEEEEEC---CCCCEEEEeccccccceEEEEEeCCCCChhHHhh----
Confidence 9999864310 11222210 1112223 33676 9999999999988754
Q ss_pred cCCCCCCCCCceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHCC
Q 010827 385 LHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 451 (500)
Q Consensus 385 ~~~~~~~~~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 451 (500)
+++++++|+|.||++++| +.|+|||+|||+... ++.+..|+.||+.||.+|.+.+.+
T Consensus 254 --~l~l~~~G~I~vd~~~~T-s~p~IyAaGDv~~~~-------~~~v~~A~~~G~~Aa~~i~~~l~~ 310 (555)
T TIGR03143 254 --VVELDKRGYIPTNEDMET-NVPGVYAAGDLRPKE-------LRQVVTAVADGAIAATSAERYVKE 310 (555)
T ss_pred --hcccCCCCeEEeCCcccc-CCCCEEEceeccCCC-------cchheeHHhhHHHHHHHHHHHHHh
Confidence 367788899999999999 999999999997531 456778999999999999988764
No 52
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=100.00 E-value=1.4e-32 Score=289.19 Aligned_cols=294 Identities=21% Similarity=0.254 Sum_probs=215.9
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCc----chhhhcc-ccccCccccccHHHHhccCC
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP----MLYELLS-GEVDAWEIAPRFADLLANTG 151 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~----~~~~~~~-g~~~~~~~~~~~~~~~~~~~ 151 (500)
...+||+|||||||||+||.+|++ .|++|+||++. ++.+. .+..+.. .......+...+.+++++++
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~------~G~~v~li~~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g 280 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAAR------KGIRTGIVAER--FGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYD 280 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHH------CCCcEEEEecC--CCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCC
Confidence 346899999999999999999999 68999999874 22111 1111110 01223345566677788889
Q ss_pred cEEEEe-eEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCCCCCCCCCccccccC---CCChHHHHHH
Q 010827 152 VQFFKD-RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFP---FSTLEDACRV 227 (500)
Q Consensus 152 v~~~~~-~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p~~~~i~G~~~~~~~---~~~~~~~~~~ 227 (500)
++++.+ +|..++.... .+.+.+.++..+.||.||+|||+.|+.+.+||..++... .+...+..
T Consensus 281 v~i~~~~~V~~I~~~~~-----------~~~V~~~~g~~i~a~~vViAtG~~~r~~~ipG~~~~~~~~v~~~~~~~~~-- 347 (517)
T PRK15317 281 VDIMNLQRASKLEPAAG-----------LIEVELANGAVLKAKTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGP-- 347 (517)
T ss_pred CEEEcCCEEEEEEecCC-----------eEEEEECCCCEEEcCEEEECCCCCcCCCCCCCHHHhcCceEEEeeccCch--
Confidence 998875 8888876532 135666777789999999999999999999986432111 11111100
Q ss_pred HHHHHHHHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCCCCcchHHHHHHHHHh-CCcEEE
Q 010827 228 DRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSA-RKVQLV 306 (500)
Q Consensus 228 ~~~l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~~~~~~~~~~~~~l~~-~gV~i~ 306 (500)
. ..+|+|+|||+|++|+|+|..|+..+.+ |+++++.+.+.. ...+.+.+.+ .||+++
T Consensus 348 ---~----------~~gk~VvVVGgG~~g~e~A~~L~~~~~~---Vtlv~~~~~l~~------~~~l~~~l~~~~gI~i~ 405 (517)
T PRK15317 348 ---L----------FKGKRVAVIGGGNSGVEAAIDLAGIVKH---VTVLEFAPELKA------DQVLQDKLRSLPNVTII 405 (517)
T ss_pred ---h----------cCCCEEEEECCCHHHHHHHHHHHhcCCE---EEEEEECccccc------cHHHHHHHhcCCCcEEE
Confidence 0 1168999999999999999999988776 999998876532 2445566665 699999
Q ss_pred cCceEEEEecCccccccccCCCCCcccccccccCCccee-EeecccccCCCccEEeecEEEEecCCCCCCCCCCCCCCcc
Q 010827 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYI-LELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRL 385 (500)
Q Consensus 307 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-l~~~~~~~~~~~~~l~~D~vi~a~G~~p~~~~~~~~~~~~ 385 (500)
+++.++++..++ +.+. +.+.+... ++.+++++|.|++++|.+|++++++..
T Consensus 406 ~~~~v~~i~~~~-----------------------g~v~~v~~~~~~~-g~~~~i~~D~v~~~~G~~p~~~~l~~~---- 457 (517)
T PRK15317 406 TNAQTTEVTGDG-----------------------DKVTGLTYKDRTT-GEEHHLELEGVFVQIGLVPNTEWLKGT---- 457 (517)
T ss_pred ECcEEEEEEcCC-----------------------CcEEEEEEEECCC-CcEEEEEcCEEEEeECCccCchHHhhh----
Confidence 999999998753 2221 23221111 234579999999999999999888642
Q ss_pred CCCCCCCCCceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHCC
Q 010827 386 HDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 451 (500)
Q Consensus 386 ~~~~~~~~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 451 (500)
++++++|+|.||+++|| +.|+|||+|||+..+ .+++..|+.+|..||.++...+..
T Consensus 458 --v~~~~~g~i~vd~~l~T-s~p~IyAaGDv~~~~-------~k~~~~A~~eG~~Aa~~~~~~l~~ 513 (517)
T PRK15317 458 --VELNRRGEIIVDARGAT-SVPGVFAAGDCTTVP-------YKQIIIAMGEGAKAALSAFDYLIR 513 (517)
T ss_pred --eeeCCCCcEEECcCCCC-CCCCEEECccccCCC-------CCEEEEhhhhHHHHHHHHHHHHhh
Confidence 56778899999999998 999999999999862 467889999999999999988864
No 53
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=100.00 E-value=5.5e-32 Score=279.27 Aligned_cols=291 Identities=23% Similarity=0.328 Sum_probs=225.1
Q ss_pred HHHHHhhhcccCCCCCCeEEEEcCCCCcccCc-chhhhccccccC-cc-ccccHHHHhccCCcEEEE-eeEEEEecCCCC
Q 010827 93 YTALRLESLVWQDDKKPQVLLVDQSERFVFKP-MLYELLSGEVDA-WE-IAPRFADLLANTGVQFFK-DRVKLLCPSDHL 168 (500)
Q Consensus 93 ~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~-~~~~~~~g~~~~-~~-~~~~~~~~~~~~~v~~~~-~~v~~i~~~~~~ 168 (500)
+||..|+++ .+.++|||||+++.+.+.+ .++.+..+.... .+ +....+.++.+.+++++. .+|+.+++..+
T Consensus 1 saA~~l~~~----~~~~~Vtlid~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~- 75 (427)
T TIGR03385 1 SAASRVRRL----DKESDIIVFEKTEDVSFANCGLPYVIGGVIDDRNKLLAYTPEVFIKKRGIDVKTNHEVIEVNDERQ- 75 (427)
T ss_pred CHHHHHHhh----CCCCcEEEEEcCCceeEEcCCCCeEeccccCCHHHcccCCHHHHHHhcCCeEEecCEEEEEECCCC-
Confidence 478888884 2578999999999988877 466666554432 22 223344565788999875 59999987765
Q ss_pred CCCCCceeecCcEEEcC---CccEEE--ecEEEEeCCCCCCCCCCCCcc-ccccCCCChHHHHHHHHHHHHHHHhccCCC
Q 010827 169 GVNGPMACTHGGTVLLE---SGLIVE--YDWLVLSLGAEPKLDVVPGAA-EFAFPFSTLEDACRVDRKLSELERRNFGKD 242 (500)
Q Consensus 169 ~~~~~~~~~~~~~v~~~---~g~~~~--~d~lIlAtG~~p~~~~i~G~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 242 (500)
.+.+. ++..+. ||+||||||++|..|++||.+ +.++...+..++..++..+...
T Consensus 76 ------------~v~~~~~~~~~~~~~~yd~lIiATG~~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l~~~-------- 135 (427)
T TIGR03385 76 ------------TVVVRNNKTNETYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYIDKN-------- 135 (427)
T ss_pred ------------EEEEEECCCCCEEecCCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhhc--------
Confidence 33332 234677 999999999999999999975 4555566777766666554321
Q ss_pred CccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCcc-CCCCCcchHHHHHHHHHhCCcEEEcCceEEEEecCcccc
Q 010827 243 SLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTI-CPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFE 321 (500)
Q Consensus 243 ~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~-~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~ 321 (500)
.+++|+|||+|.+|+|+|..|++.+.+ |+++++.+.+ .+.+++...+.+.+.|++.||++++++.++++..++
T Consensus 136 ~~~~vvViGgG~~g~e~A~~l~~~g~~---Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~--- 209 (427)
T TIGR03385 136 KVENVVIIGGGYIGIEMAEALRERGKN---VTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGEE--- 209 (427)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCc---EEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecCC---
Confidence 167999999999999999999987776 9999998877 466778888889999999999999999999997643
Q ss_pred ccccCCCCCcccccccccCCcceeEeecccccCCCccEEeecEEEEecCCCCCCCCCCCCCCccCCCCCCCCCceEeCCC
Q 010827 322 ASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDET 401 (500)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~~~~g~i~vd~~ 401 (500)
..+.+. +++++++|.||+++|.+|+.++++.++ ++++.+|+|.||+.
T Consensus 210 --------------------~~v~~~--------~g~~i~~D~vi~a~G~~p~~~~l~~~g-----l~~~~~G~i~vd~~ 256 (427)
T TIGR03385 210 --------------------RVKVFT--------SGGVYQADMVILATGIKPNSELAKDSG-----LKLGETGAIWVNEK 256 (427)
T ss_pred --------------------CEEEEc--------CCCEEEeCEEEECCCccCCHHHHHhcC-----cccCCCCCEEECCC
Confidence 211222 567899999999999999988876544 77888899999999
Q ss_pred cccCCCCCEEEecccccccCCC-CC-CCCchHHHHHHHHHHHHHHHHHH
Q 010827 402 LCVKGHPRIFALGDSSALRDSS-GR-PLPATAQVAFQQADFAGWNLWAA 448 (500)
Q Consensus 402 ~~t~~~~~vyaiGD~~~~~~~~-~~-~~~~~~~~A~~~g~~aa~~i~~~ 448 (500)
+|| +.|+||++|||+..++.. ++ ..+.++..|.+||+.+|+||.+.
T Consensus 257 ~~t-~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g~ 304 (427)
T TIGR03385 257 FQT-SVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAGN 304 (427)
T ss_pred cEe-CCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhcCC
Confidence 999 899999999999865431 22 23468889999999999999753
No 54
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=100.00 E-value=4.9e-32 Score=295.41 Aligned_cols=301 Identities=17% Similarity=0.132 Sum_probs=196.2
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEE
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFK 156 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~ 156 (500)
...++|+|||||||||+||.+|++ .|++|+|||+++.++..... ..+....+.+......+++...+++++.
T Consensus 535 ~~~kkVaIIGGGPAGLSAA~~LAr------~G~~VTV~Ek~~~lGG~l~~--~IP~~rlp~e~l~~~ie~l~~~GVe~~~ 606 (1012)
T TIGR03315 535 SSAHKVAVIGAGPAGLSAGYFLAR------AGHPVTVFEKKEKPGGVVKN--IIPEFRISAESIQKDIELVKFHGVEFKY 606 (1012)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHH------CCCeEEEEecccccCceeee--cccccCCCHHHHHHHHHHHHhcCcEEEE
Confidence 456899999999999999999999 79999999998875443211 1111111122223333455667888877
Q ss_pred eeEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCC-CCCCCCCccccccCCCChHHHHHHHHHHHHHH
Q 010827 157 DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEP-KLDVVPGAAEFAFPFSTLEDACRVDRKLSELE 235 (500)
Q Consensus 157 ~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p-~~~~i~G~~~~~~~~~~~~~~~~~~~~l~~~~ 235 (500)
+... .++.++.....||+||||||+++ ..+.++|..+.+. +..++. ..+ .
T Consensus 607 g~~~--------------------d~~ve~l~~~gYDaVIIATGA~~~~~l~I~G~~~~v~---~avefL---~~~---~ 657 (1012)
T TIGR03315 607 GCSP--------------------DLTVAELKNQGYKYVILAIGAWKHGPLRLEGGGERVL---KSLEFL---RAF---K 657 (1012)
T ss_pred eccc--------------------ceEhhhhhcccccEEEECCCCCCCCCCCcCCCCccee---eHHHHH---HHh---h
Confidence 6311 12222334567999999999974 4556777533221 211211 111 1
Q ss_pred HhccCCCCccEEEEECCChhHHHHHHHHHHH-HhhcCeEEEEecCCc-cCCCCCcchHHHHHHHHHhCCcEEEcCceEEE
Q 010827 236 RRNFGKDSLIRVAVVGCGYSGVELAATVSER-LEEKGIVQAINVETT-ICPTGTPGNREAALKVLSARKVQLVLGYFVRC 313 (500)
Q Consensus 236 ~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~-~~~~~~vtlv~~~~~-~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~ 313 (500)
........+|+|+|||||++|+|+|..+.+. +.+ .|+++.+... .++.. .+.+.+.+ +.||++++...+.+
T Consensus 658 ~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~--kVtLVyRr~~~~Mpa~----~eEl~~al-eeGVe~~~~~~p~~ 730 (1012)
T TIGR03315 658 EGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVE--KVTVVYRRTKRYMPAS----REELEEAL-EDGVDFKELLSPES 730 (1012)
T ss_pred ccccccccCCeEEEECCCHHHHHHHHHHHHhCCCc--eEEEEEccCccccccC----HHHHHHHH-HcCCEEEeCCceEE
Confidence 1000112378999999999999999988765 432 2999998653 33322 23333433 57999999999888
Q ss_pred EecCccccccccCCCCCccccc-ccccCCcceeEeecccccCCCccEEeecEEEEecCCCCCCCCCCCCCCccCCCCCCC
Q 010827 314 IRRVGEFEASVKQPESGAIPNI-AADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNA 392 (500)
Q Consensus 314 i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~~~ 392 (500)
+.. +.. ++.... ......+..... ..++..++++|.||+|+|.+|+.++++.. +++++.
T Consensus 731 I~~-g~l---------~v~~~~l~~~d~sGr~~~v-----~~Gee~~I~aD~VIvAiG~~Pnt~lle~~-----GL~ld~ 790 (1012)
T TIGR03315 731 FED-GTL---------TCEVMKLGEPDASGRRRPV-----GTGETVDLPADTVIAAVGEQVDTDLLQKN-----GIPLDE 790 (1012)
T ss_pred EEC-CeE---------EEEEEEeecccCCCceeee-----cCCCeEEEEeCEEEEecCCcCChHHHHhc-----CcccCC
Confidence 873 210 000000 000000111110 11345689999999999999998887654 477888
Q ss_pred CCceEeCCC-cccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHC
Q 010827 393 RGQAETDET-LCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIN 450 (500)
Q Consensus 393 ~g~i~vd~~-~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 450 (500)
+|++.||+. ++| +.|+||++|||+.. +.++..|+.+|+.||.+|.+...
T Consensus 791 ~G~I~VD~~~~~T-s~pgVFAaGD~a~G--------P~tVv~AIaqGr~AA~nIl~~~~ 840 (1012)
T TIGR03315 791 YGWPVVNQATGET-NITNVFVIGDANRG--------PATIVEAIADGRKAANAILSREG 840 (1012)
T ss_pred CCCEEeCCCCCcc-CCCCEEEEeCcCCC--------ccHHHHHHHHHHHHHHHHhcccc
Confidence 999999975 888 99999999999875 67899999999999999986543
No 55
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=100.00 E-value=3.2e-32 Score=292.61 Aligned_cols=350 Identities=19% Similarity=0.118 Sum_probs=220.3
Q ss_pred cccCCCCcc-ccchHHHHHHH-HhhhccccccccccccccccCCCCCCCCCCCCeEEEECCcHHHHHHHHHhhhcccCCC
Q 010827 29 SSKSYLSFK-TCRKNRFISFA-ASNSSGRNGDLVVTSEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDD 106 (500)
Q Consensus 29 ~~~~~~~~~-~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~ 106 (500)
+..+..+++ .|.|.....++ -|..+...+...........+ ..+....++|+|||||||||++|..|++
T Consensus 144 grvC~~~Ce~~C~r~~~~~~v~i~~l~r~~~~~~~~~~~~~~~---~~~~~~~k~VaIIGaGpAGl~aA~~La~------ 214 (652)
T PRK12814 144 GRICPAPCEEACRRHGVDEPVSICALKRYAADRDMESAERYIP---ERAPKSGKKVAIIGAGPAGLTAAYYLLR------ 214 (652)
T ss_pred eCCcCchhhHHHcCCCCCCCcchhHHHHHHHHHHHhcCcccCC---CCCCCCCCEEEEECCCHHHHHHHHHHHH------
Confidence 334455666 45555444443 455555444211100000001 1123456899999999999999999999
Q ss_pred CCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEEeeEEEEecCCCCCCCCCceeecCcEEEcCC
Q 010827 107 KKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLES 186 (500)
Q Consensus 107 ~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~ 186 (500)
.|++|+|||+.+.++..... .++....+..+.....+.+.+.++++..+....++ ++.++
T Consensus 215 ~G~~Vtv~e~~~~~GG~l~~--gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~d------------------v~~~~ 274 (652)
T PRK12814 215 KGHDVTIFDANEQAGGMMRY--GIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRD------------------ITLEE 274 (652)
T ss_pred CCCcEEEEecCCCCCceeee--cCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCc------------------cCHHH
Confidence 68999999998875432211 01111112223333345566778888876543221 12222
Q ss_pred ccEEEecEEEEeCCCCC-CCCCCCCccccccCCCChHHHHHHHHHHHHHHHhccCCCCccEEEEECCChhHHHHHHHHHH
Q 010827 187 GLIVEYDWLVLSLGAEP-KLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSE 265 (500)
Q Consensus 187 g~~~~~d~lIlAtG~~p-~~~~i~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~ 265 (500)
. ...||+||||||+.+ ..+++||.+. ..+.+..++.+... .. .....+|+|+|||+|++|+|+|..+.+
T Consensus 275 ~-~~~~DaVilAtGa~~~~~~~ipG~~~--~gv~~~~~~l~~~~------~~-~~~~~gk~VvVIGgG~~a~e~A~~l~~ 344 (652)
T PRK12814 275 L-QKEFDAVLLAVGAQKASKMGIPGEEL--PGVISGIDFLRNVA------LG-TALHPGKKVVVIGGGNTAIDAARTALR 344 (652)
T ss_pred H-HhhcCEEEEEcCCCCCCCCCCCCcCc--CCcEeHHHHHHHhh------cC-CcccCCCeEEEECCCHHHHHHHHHHHH
Confidence 2 235999999999985 5678888542 11222222211110 00 011237899999999999999999988
Q ss_pred HHhhcCeEEEEecCCc-cCCCCCcchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcce
Q 010827 266 RLEEKGIVQAINVETT-ICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKY 344 (500)
Q Consensus 266 ~~~~~~~vtlv~~~~~-~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 344 (500)
.+.+. |+++++... .++.. ...+.+. .+.||+|++++.+.++..+++.. .+ ..+
T Consensus 345 ~Ga~~--Vtlv~r~~~~~mpa~----~~ei~~a-~~eGV~i~~~~~~~~i~~~~~~~------~v------------~~~ 399 (652)
T PRK12814 345 LGAES--VTILYRRTREEMPAN----RAEIEEA-LAEGVSLRELAAPVSIERSEGGL------EL------------TAI 399 (652)
T ss_pred cCCCe--EEEeeecCcccCCCC----HHHHHHH-HHcCCcEEeccCcEEEEecCCeE------EE------------EEE
Confidence 77532 999998763 23322 2233333 46799999999999987643110 00 001
Q ss_pred eEeecc-c--------ccCCCccEEeecEEEEecCCCCCCCCCCCCCCccCCCCCCCCCceEeCC-CcccCCCCCEEEec
Q 010827 345 ILELQP-A--------IKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDE-TLCVKGHPRIFALG 414 (500)
Q Consensus 345 ~l~~~~-~--------~~~~~~~~l~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~~~~g~i~vd~-~~~t~~~~~vyaiG 414 (500)
.++... . ...++..++++|.||+++|+.|+.+++... +++++.+|++.||+ .++| +.|+|||+|
T Consensus 400 ~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ll~~~-----gl~~~~~G~I~vd~~~~~T-s~pgVfA~G 473 (652)
T PRK12814 400 KMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIAEAA-----GIGTSRNGTVKVDPETLQT-SVAGVFAGG 473 (652)
T ss_pred EEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCccccccc-----CccccCCCcEeeCCCCCcC-CCCCEEEcC
Confidence 111100 0 011234579999999999999998887654 47788889999996 5777 999999999
Q ss_pred ccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHCCCCCCC
Q 010827 415 DSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLP 456 (500)
Q Consensus 415 D~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~~~p 456 (500)
||+.. +.++..|+.+|+.||.+|...|.++++.+
T Consensus 474 Dv~~g--------~~~v~~Ai~~G~~AA~~I~~~L~g~~~~~ 507 (652)
T PRK12814 474 DCVTG--------ADIAINAVEQGKRAAHAIDLFLNGKPVTA 507 (652)
T ss_pred CcCCC--------chHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 99976 67889999999999999999999876543
No 56
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=100.00 E-value=1.2e-31 Score=278.98 Aligned_cols=315 Identities=18% Similarity=0.156 Sum_probs=205.2
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEE
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFK 156 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~ 156 (500)
...++|+|||||||||++|..|++ .|++|+|||+.+.+...... . ++.......+.....+++.+.+++++.
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~------~G~~V~vie~~~~~GG~l~~-g-ip~~~~~~~~~~~~~~~~~~~gv~~~~ 212 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLAR------AGHKVTVFERADRIGGLLRY-G-IPDFKLEKEVIDRRIELMEAEGIEFRT 212 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHh------CCCcEEEEecCCCCCceeee-c-CCcccCCHHHHHHHHHHHHhCCcEEEe
Confidence 455899999999999999999998 68999999998765432110 0 111111122333344566778999988
Q ss_pred eeEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCC-CCCCCCCCccccccCCCChHHHHHHHH-HHHHH
Q 010827 157 DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAE-PKLDVVPGAAEFAFPFSTLEDACRVDR-KLSEL 234 (500)
Q Consensus 157 ~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~-p~~~~i~G~~~~~~~~~~~~~~~~~~~-~l~~~ 234 (500)
+.....+.. .. .....||+||+|||+. +..+.+||.+. ..+.+..++..... .+...
T Consensus 213 ~~~v~~~~~------------------~~-~~~~~~d~vvlAtGa~~~~~l~ipG~~~--~gV~~~~~~l~~~~~~~~~~ 271 (471)
T PRK12810 213 NVEVGKDIT------------------AE-ELLAEYDAVFLGTGAYKPRDLGIPGRDL--DGVHFAMDFLIQNTRRVLGD 271 (471)
T ss_pred CCEECCcCC------------------HH-HHHhhCCEEEEecCCCCCCcCCCCCccC--CCcEEHHHHHHHHHhhhccc
Confidence 754332111 11 1135799999999997 77888998642 11222222211100 00000
Q ss_pred HHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCCCC-----cch-HHHHHHHHHhCCcEEEcC
Q 010827 235 ERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGT-----PGN-REAALKVLSARKVQLVLG 308 (500)
Q Consensus 235 ~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~~~-----~~~-~~~~~~~l~~~gV~i~~~ 308 (500)
.........+|+|+|||+|++|+|+|..+.+.+.+. |++++.......... +.. .....+.+++.||+++++
T Consensus 272 ~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~--Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~ 349 (471)
T PRK12810 272 ETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKS--VTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFN 349 (471)
T ss_pred cccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCe--EEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEec
Confidence 000001123789999999999999999888776542 886665443222110 001 111356678889999999
Q ss_pred ceEEEEecCccccccccCCCCCcccccccccCCcceeEe---eccc---ccCCCccEEeecEEEEecCCCCCC-CCCCCC
Q 010827 309 YFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILE---LQPA---IKGLESQIFEADLVLWTVGSKPLL-PHVEPP 381 (500)
Q Consensus 309 ~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~---~~~~---~~~~~~~~l~~D~vi~a~G~~p~~-~~~~~~ 381 (500)
+.+++|..+++.. .+|.+. +.+. ...++.+++++|.||+++|++|+. .+++..
T Consensus 350 ~~~~~i~~~~g~v--------------------~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~ 409 (471)
T PRK12810 350 VQTKEFEGENGKV--------------------TGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQF 409 (471)
T ss_pred cCceEEEccCCEE--------------------EEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhcccc
Confidence 9999997533111 112221 1000 012245689999999999999985 465543
Q ss_pred CCccCCCCCCCCCceEeC-CCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHCCCCCCC
Q 010827 382 NNRLHDLPLNARGQAETD-ETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLP 456 (500)
Q Consensus 382 ~~~~~~~~~~~~g~i~vd-~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~~~p 456 (500)
+++++.+|++.+| ++++| +.|+||++|||+.. +.++..|+.+|+.+|.+|...|.++.+.|
T Consensus 410 -----gl~~~~~g~i~vd~~~~~T-s~~gVfa~GD~~~g--------~~~~~~Av~~G~~AA~~i~~~L~g~~~~~ 471 (471)
T PRK12810 410 -----GVELDERGRVAAPDNAYQT-SNPKVFAAGDMRRG--------QSLVVWAIAEGRQAARAIDAYLMGSTALP 471 (471)
T ss_pred -----CcccCCCCCEEeCCCcccC-CCCCEEEccccCCC--------chhHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 4778889999998 78998 99999999999985 56788999999999999999998876544
No 57
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=100.00 E-value=5.9e-32 Score=275.87 Aligned_cols=345 Identities=19% Similarity=0.264 Sum_probs=275.7
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCccc-CcchhhhccccccCccccccHHHHhccCCcEEEEe
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF-KPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD 157 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (500)
+.++||||.|+||..+...+.+. .+.-++||++-.+++..| ..++..++.+..+.+++...-.+|.++.++..+.+
T Consensus 3 k~klvvvGnGmag~r~iEell~~---~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~ 79 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLES---APDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTG 79 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhc---CcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcC
Confidence 47899999999999999999884 346789999999998887 57788888888888888877788999999999997
Q ss_pred -eEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCCCCCCCCCcc-ccccCCCChHHHHHHHHHHHHHH
Q 010827 158 -RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAA-EFAFPFSTLEDACRVDRKLSELE 235 (500)
Q Consensus 158 -~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p~~~~i~G~~-~~~~~~~~~~~~~~~~~~l~~~~ 235 (500)
.++.||...+ .|.++.|..+.||.||+|||+.|+++++||.+ ..++.+++.+|...+...-..
T Consensus 80 ~~v~~idr~~k-------------~V~t~~g~~~~YDkLilATGS~pfi~PiPG~~~~~v~~~R~i~D~~am~~~ar~-- 144 (793)
T COG1251 80 EKVIQIDRANK-------------VVTTDAGRTVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDCARN-- 144 (793)
T ss_pred CeeEEeccCcc-------------eEEccCCcEeecceeEEecCccccccCCCCCCCCCeeEEecHHHHHHHHHHHhc--
Confidence 8999999987 69999999999999999999999999999986 457778899988877665221
Q ss_pred HhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCC-CCCcchHHHHHHHHHhCCcEEEcCceEEEE
Q 010827 236 RRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICP-TGTPGNREAALKVLSARKVQLVLGYFVRCI 314 (500)
Q Consensus 236 ~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~-~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i 314 (500)
.++.+|||||..|+|+|..|.+.+-+ ++|++..+.++. ++++.....+++.+++.|++++++....++
T Consensus 145 --------~~~avVIGGGLLGlEaA~~L~~~Gm~---~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei 213 (793)
T COG1251 145 --------KKKAVVIGGGLLGLEAARGLKDLGME---VTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEI 213 (793)
T ss_pred --------cCCcEEEccchhhhHHHHHHHhCCCc---eEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhh
Confidence 45789999999999999999998888 999998887764 467778888899999999999999888888
Q ss_pred ecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccEEeecEEEEecCCCCCCCCCCCCCCccCCCCCCCCC
Q 010827 315 RRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARG 394 (500)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~~~~g 394 (500)
..++.. .++.+. ++..+++|.||+++|.+||.++..+.+ +..+.
T Consensus 214 ~g~~~~---------------------~~vr~~--------DG~~i~ad~VV~a~GIrPn~ela~~aG-----lavnr-- 257 (793)
T COG1251 214 VGEDKV---------------------EGVRFA--------DGTEIPADLVVMAVGIRPNDELAKEAG-----LAVNR-- 257 (793)
T ss_pred hcCcce---------------------eeEeec--------CCCcccceeEEEecccccccHhHHhcC-----cCcCC--
Confidence 774411 344443 899999999999999999999988765 66665
Q ss_pred ceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHCCCC---CCCceecCce-eEEEecC
Q 010827 395 QAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRP---LLPFRFQNLG-EMMILGR 470 (500)
Q Consensus 395 ~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~---~~p~~~~~~~-~~~~~G~ 470 (500)
.|.||.++|| +.|+|||+|+|+... ...+.++..+..|++.+|.++.....++. ..+-+.+-.| .+.+.|+
T Consensus 258 GIvvnd~mqT-sdpdIYAvGEcae~~----g~~yGLVaP~yeq~~v~a~hl~~~~~~~y~gsv~stkLKv~Gvdl~S~GD 332 (793)
T COG1251 258 GIVVNDYMQT-SDPDIYAVGECAEHR----GKVYGLVAPLYEQAKVLADHLCGGEAEAYEGSVTSTKLKVSGVDVFSAGD 332 (793)
T ss_pred Ceeecccccc-cCCCeeehhhHHHhc----CccceehhHHHHHHHHHHHHhccCcccccccccchhhhcccccceeeccc
Confidence 7999999999 999999999999873 23467888999999999999987655421 1111223344 5677775
Q ss_pred CCeeecCCccCceEEechhhHHhhhh
Q 010827 471 NDAAVSPSFVEGVTLDGPIGHSGKVL 496 (500)
Q Consensus 471 ~~~~~~~~~~~~~~~~g~~~~~~~~~ 496 (500)
-..--. -..+++...-+..+||+
T Consensus 333 ~~e~~~---~~~iv~~D~~~~iYKrl 355 (793)
T COG1251 333 FQETEG---AESIVFRDEQRGIYKKL 355 (793)
T ss_pred hhhcCC---CceEEEecccccceeEE
Confidence 442111 12344444555555544
No 58
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=1.2e-31 Score=253.12 Aligned_cols=299 Identities=20% Similarity=0.289 Sum_probs=234.9
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccC----------cchhh-----hccc------cccC
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFK----------PMLYE-----LLSG------EVDA 136 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~----------~~~~~-----~~~g------~~~~ 136 (500)
..+||+|||+||+|.-||..+++ .|++.+.+|++..++.. .++.. .+.. ..+.
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQ------lGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~v 111 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQ------LGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDV 111 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHH------hcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccc
Confidence 45999999999999999999999 58899999998743221 11100 0000 0000
Q ss_pred ------------------ccccccHHHHhccCCcEEEEeeEEEEecCCCCCCCCCceeecCcEEEcCCc--cEEEecEEE
Q 010827 137 ------------------WEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG--LIVEYDWLV 196 (500)
Q Consensus 137 ------------------~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g--~~~~~d~lI 196 (500)
..+...+...+++.+|.++++.-..+++..- ++...|+ ..+.++++|
T Consensus 112 s~~~~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~~V-------------~v~k~dg~~~ii~aKnIi 178 (506)
T KOG1335|consen 112 SSVSLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKV-------------SVKKIDGEDQIIKAKNII 178 (506)
T ss_pred cceecCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCceE-------------EEeccCCCceEEeeeeEE
Confidence 1122335566777889999998887877643 3444444 478999999
Q ss_pred EeCCCCCCCCCCCCccccccCCCChHHHHHHHHHHHHHHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEE
Q 010827 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAI 276 (500)
Q Consensus 197 lAtG~~p~~~~i~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv 276 (500)
+|||+. .+++||..-.--.+.+...++.+..- ||+.+|||+|.+|+|+..-..+.+.+ ||+|
T Consensus 179 iATGSe--V~~~PGI~IDekkIVSStgALsL~~v-------------Pk~~~viG~G~IGLE~gsV~~rLGse---VT~V 240 (506)
T KOG1335|consen 179 IATGSE--VTPFPGITIDEKKIVSSTGALSLKEV-------------PKKLTVIGAGYIGLEMGSVWSRLGSE---VTVV 240 (506)
T ss_pred EEeCCc--cCCCCCeEecCceEEecCCccchhhC-------------cceEEEEcCceeeeehhhHHHhcCCe---EEEE
Confidence 999995 33455653111123455566666655 89999999999999999999999998 9999
Q ss_pred ecCCccCCCCCcchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCC
Q 010827 277 NVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLE 356 (500)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~ 356 (500)
+-.+.+.+.++.+++...++.|+++|++|++++.|..++.+++ +.|.+++++...+ .
T Consensus 241 Ef~~~i~~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~d----------------------g~v~i~ve~ak~~-k 297 (506)
T KOG1335|consen 241 EFLDQIGGVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGD----------------------GPVEIEVENAKTG-K 297 (506)
T ss_pred EehhhhccccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCC----------------------CceEEEEEecCCC-c
Confidence 9999999999999999999999999999999999999998774 4677777665555 6
Q ss_pred ccEEeecEEEEecCCCCCCCCCCCCCCccCCCCCCCCCceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHH
Q 010827 357 SQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQ 436 (500)
Q Consensus 357 ~~~l~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~~~~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~ 436 (500)
.++++||.+++++|++|.+.-+. ++..|++.|.+|++.+|..++| .+|+||+|||+... |++++.|-.
T Consensus 298 ~~tle~DvlLVsiGRrP~t~GLg---le~iGi~~D~r~rv~v~~~f~t-~vP~i~~IGDv~~g--------pMLAhkAee 365 (506)
T KOG1335|consen 298 KETLECDVLLVSIGRRPFTEGLG---LEKIGIELDKRGRVIVNTRFQT-KVPHIYAIGDVTLG--------PMLAHKAEE 365 (506)
T ss_pred eeEEEeeEEEEEccCcccccCCC---hhhcccccccccceeccccccc-cCCceEEecccCCc--------chhhhhhhh
Confidence 88999999999999999876554 3456899999999999999999 99999999999997 899999999
Q ss_pred HHHHHHHHHHHH
Q 010827 437 QADFAGWNLWAA 448 (500)
Q Consensus 437 ~g~~aa~~i~~~ 448 (500)
||-.+.+.|...
T Consensus 366 egI~~VE~i~g~ 377 (506)
T KOG1335|consen 366 EGIAAVEGIAGG 377 (506)
T ss_pred hchhheeeeccc
Confidence 999999988754
No 59
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=100.00 E-value=4.3e-31 Score=291.23 Aligned_cols=317 Identities=17% Similarity=0.091 Sum_probs=210.0
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEE
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFK 156 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~ 156 (500)
...++|+|||||||||+||.+|++ .||+|||||+.+.++..... .++....+.++.....+.++..|++|..
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar------~G~~VtVfE~~~~~GG~l~y--GIP~~rlp~~vi~~~i~~l~~~Gv~f~~ 375 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAV------EGFPVTVFEAFHDLGGVLRY--GIPEFRLPNQLIDDVVEKIKLLGGRFVK 375 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHH------CCCeEEEEeeCCCCCceEEc--cCCCCcChHHHHHHHHHHHHhhcCeEEE
Confidence 457999999999999999999999 79999999998875443211 0122222233444455667778999988
Q ss_pred eeEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCC-CCCCCCCCccccccCCCChHHHHHHHHHHHHHH
Q 010827 157 DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAE-PKLDVVPGAAEFAFPFSTLEDACRVDRKLSELE 235 (500)
Q Consensus 157 ~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~-p~~~~i~G~~~~~~~~~~~~~~~~~~~~l~~~~ 235 (500)
+..... .+++++.....||+||||||+. |+.+++||.+. ..+++..++...........
T Consensus 376 n~~vG~------------------dit~~~l~~~~yDAV~LAtGA~~pr~l~IpG~dl--~GV~~a~dfL~~~~~~~~~~ 435 (944)
T PRK12779 376 NFVVGK------------------TATLEDLKAAGFWKIFVGTGAGLPTFMNVPGEHL--LGVMSANEFLTRVNLMRGLD 435 (944)
T ss_pred eEEecc------------------EEeHHHhccccCCEEEEeCCCCCCCcCCCCCCcC--cCcEEHHHHHHHHHhhcccc
Confidence 754322 4666666566899999999994 88899999542 22344444443222111000
Q ss_pred Hh---ccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCCCCcchHHHHHHHHHhCCcEEEcCceEE
Q 010827 236 RR---NFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVR 312 (500)
Q Consensus 236 ~~---~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~ 312 (500)
.. ......+|+|+|||||++|+|+|..+.+.+.+ |+++.+.... .++ .....+.. ..+.||+++++..++
T Consensus 436 ~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~---Vtlv~rr~~~--~mp-a~~~e~~~-a~eeGV~~~~~~~p~ 508 (944)
T PRK12779 436 DDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGN---VTIVYRRTKS--EMP-ARVEELHH-ALEEGINLAVLRAPR 508 (944)
T ss_pred ccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCE---EEEEEecCcc--ccc-ccHHHHHH-HHHCCCEEEeCcceE
Confidence 00 00011378999999999999999999998886 9999886531 122 22223333 456799999999999
Q ss_pred EEecCccc--cccccCCCC-CcccccccccCCcceeEeecccccCCCccEEeecEEEEecCCCCCCCCCCCCCCccCCCC
Q 010827 313 CIRRVGEF--EASVKQPES-GAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLP 389 (500)
Q Consensus 313 ~i~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~p~~~~~~~~~~~~~~~~ 389 (500)
++..+++. ...+.-..+ ...|+ ..++.... ..++..++++|.||+|+|+.|+..+... ..+++
T Consensus 509 ~i~~d~~~~~V~~v~~~~~~l~~~d-----~~Gr~~~~-----~~G~e~~i~aD~VI~AiG~~p~~~l~~~----~~gle 574 (944)
T PRK12779 509 EFIGDDHTHFVTHALLDVNELGEPD-----KSGRRSPK-----PTGEIERVPVDLVIMALGNTANPIMKDA----EPGLK 574 (944)
T ss_pred EEEecCCCCEEEEEEEEEEEecccc-----CcCceeee-----cCCceEEEECCEEEEcCCcCCChhhhhc----ccCce
Confidence 99754210 000000000 00000 00100000 1124467999999999999998543222 12577
Q ss_pred CCCCCceEeCC-CcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHCC
Q 010827 390 LNARGQAETDE-TLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 451 (500)
Q Consensus 390 ~~~~g~i~vd~-~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 451 (500)
++.+|.|.||+ .++| +.|+|||+|||+.. +.++..|+.+|+.||.+|.+.|.-
T Consensus 575 ~~~~G~I~vd~~~~~T-s~pgVFAaGD~~~G--------~~~vv~Ai~eGr~AA~~I~~~L~~ 628 (944)
T PRK12779 575 TNKWGTIEVEKGSQRT-SIKGVYSGGDAARG--------GSTAIRAAGDGQAAAKEIVGEIPF 628 (944)
T ss_pred ECCCCCEEECCCCCcc-CCCCEEEEEcCCCC--------hHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88899999996 5788 99999999999986 678999999999999999988764
No 60
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.98 E-value=4.6e-31 Score=289.08 Aligned_cols=310 Identities=18% Similarity=0.114 Sum_probs=208.7
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEE
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFK 156 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~ 156 (500)
...++|+|||||||||+||.+|++ .|++|+|||+.+.++..... .++....+.++.....+.+.+.+++++.
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~------~G~~V~v~e~~~~~GG~l~~--gip~~rlp~~~~~~~~~~l~~~gv~~~~ 500 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAK------RGYDVTVFEALHEIGGVLKY--GIPEFRLPKKIVDVEIENLKKLGVKFET 500 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHH------CCCeEEEEecCCCCCCeeee--cCCCCCCCHHHHHHHHHHHHHCCCEEEC
Confidence 456899999999999999999999 69999999997654322111 0111111122333334556677999988
Q ss_pred eeEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCC-CCCCCCCCCccccccCCCChHHHHHHHHHHHHHH
Q 010827 157 DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA-EPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELE 235 (500)
Q Consensus 157 ~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~-~p~~~~i~G~~~~~~~~~~~~~~~~~~~~l~~~~ 235 (500)
+.... + .+++++.....||+||||||+ .|+.+++||.+. ..+.+..++...........
T Consensus 501 ~~~v~-----~-------------~v~~~~l~~~~ydavvlAtGa~~~~~l~ipG~~~--~gV~~~~~~l~~~~~~~~~~ 560 (752)
T PRK12778 501 DVIVG-----K-------------TITIEELEEEGFKGIFIASGAGLPNFMNIPGENS--NGVMSSNEYLTRVNLMDAAS 560 (752)
T ss_pred CCEEC-----C-------------cCCHHHHhhcCCCEEEEeCCCCCCCCCCCCCCCC--CCcEEHHHHHHHHhhccccc
Confidence 75321 1 244444445679999999998 588899999642 22334444433221111000
Q ss_pred H-hccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCCCCcchHHHHHHHHHhCCcEEEcCceEEEE
Q 010827 236 R-RNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCI 314 (500)
Q Consensus 236 ~-~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i 314 (500)
. .......+|+|+|||||++|+|+|..+.+.+.+. |+++++.... .++.... ..+.+++.||++++++.+.++
T Consensus 561 ~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~--Vtlv~r~~~~--~~~~~~~--e~~~~~~~GV~i~~~~~~~~i 634 (752)
T PRK12778 561 PDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAER--VTIVYRRSEE--EMPARLE--EVKHAKEEGIEFLTLHNPIEY 634 (752)
T ss_pred ccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCe--EEEeeecCcc--cCCCCHH--HHHHHHHcCCEEEecCcceEE
Confidence 0 0001123789999999999999999998887642 9999986531 2222222 224578889999999999998
Q ss_pred ecCccccccccCCCCCcccccccccCCcceeEe---ecc-cc--------cCCCccEEeecEEEEecCCCCCCCCCCCCC
Q 010827 315 RRVGEFEASVKQPESGAIPNIAADKNSDKYILE---LQP-AI--------KGLESQIFEADLVLWTVGSKPLLPHVEPPN 382 (500)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~---~~~-~~--------~~~~~~~l~~D~vi~a~G~~p~~~~~~~~~ 382 (500)
..+.+.. + .++.+. +.. .. ..++..++++|.||+|+|++|+..++...
T Consensus 635 ~~~~~g~-------v------------~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~- 694 (752)
T PRK12778 635 LADEKGW-------V------------KQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSI- 694 (752)
T ss_pred EECCCCE-------E------------EEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCccccccc-
Confidence 6532100 0 112221 000 00 11244579999999999999997665442
Q ss_pred CccCCCCCCCCCceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHCCC
Q 010827 383 NRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDR 452 (500)
Q Consensus 383 ~~~~~~~~~~~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~ 452 (500)
.+++++.+|+|.||++++| +.|+|||+|||+.. +.++..|+.+|+.||.+|.+.|.++
T Consensus 695 ---~gl~~~~~G~i~vd~~~~T-s~~gVfA~GD~~~g--------~~~vv~Av~~G~~AA~~I~~~L~~~ 752 (752)
T PRK12778 695 ---PGLELNRKGTIVVDEEMQS-SIPGIYAGGDIVRG--------GATVILAMGDGKRAAAAIDEYLSSK 752 (752)
T ss_pred ---cCceECCCCCEEeCCCCCC-CCCCEEEeCCccCC--------cHHHHHHHHHHHHHHHHHHHHhccC
Confidence 2577888999999999998 99999999999986 6788999999999999999998753
No 61
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.98 E-value=1.2e-30 Score=262.02 Aligned_cols=320 Identities=20% Similarity=0.161 Sum_probs=203.9
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEE
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFK 156 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~ 156 (500)
...++|+|||+|++|+++|..|++ .|++|++||+.+.+...... ...........+.....+ +.+.+++++.
T Consensus 16 ~~~~~VvIIG~G~aGl~aA~~l~~------~g~~v~lie~~~~~gg~~~~-~~~~~~~~~~~~~~~~~~-l~~~~i~~~~ 87 (352)
T PRK12770 16 PTGKKVAIIGAGPAGLAAAGYLAC------LGYEVHVYDKLPEPGGLMLF-GIPEFRIPIERVREGVKE-LEEAGVVFHT 87 (352)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHH------CCCcEEEEeCCCCCCceeee-cCcccccCHHHHHHHHHH-HHhCCeEEec
Confidence 345799999999999999999998 68999999998775432211 001111111222223333 4445888887
Q ss_pred ee-EEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCC-CCCCCCCCCccccccCCCChHHHH-HHHHHHHH
Q 010827 157 DR-VKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA-EPKLDVVPGAAEFAFPFSTLEDAC-RVDRKLSE 233 (500)
Q Consensus 157 ~~-v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~-~p~~~~i~G~~~~~~~~~~~~~~~-~~~~~l~~ 233 (500)
+. +..++..... .. ... ....+..++ ..+.||+||||||+ .|..|++||.+.. .+.+..+.. .+......
T Consensus 88 ~~~v~~~~~~~~~--~~-~~~-~~~~~~~~~-~~~~~d~lviAtGs~~~~~~~ipg~~~~--~v~~~~~~~~~~~~~~~~ 160 (352)
T PRK12770 88 RTKVCCGEPLHEE--EG-DEF-VERIVSLEE-LVKKYDAVLIATGTWKSRKLGIPGEDLP--GVYSALEYLFRIRAAKLG 160 (352)
T ss_pred CcEEeeccccccc--cc-ccc-ccccCCHHH-HHhhCCEEEEEeCCCCCCcCCCCCcccc--CceeHHHHHHHhhhcccc
Confidence 74 4333220000 00 000 000112222 24789999999999 4788899986421 122222211 11110000
Q ss_pred -HHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCCCCcchHHHHHHHHHhCCcEEEcCceEE
Q 010827 234 -LERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVR 312 (500)
Q Consensus 234 -~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~ 312 (500)
..........+++|+|||+|++|+|+|..|...+.+ .|+++++..... ......+.+.|+++||++++++.+.
T Consensus 161 ~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~--~Vtvi~~~~~~~----~~~~~~~~~~l~~~gi~i~~~~~v~ 234 (352)
T PRK12770 161 YLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAE--KVYLAYRRTINE----APAGKYEIERLIARGVEFLELVTPV 234 (352)
T ss_pred ccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCC--eEEEEeecchhh----CCCCHHHHHHHHHcCCEEeeccCce
Confidence 000000011258999999999999999999876654 399998765421 1222445567999999999999999
Q ss_pred EEecCccccccccCCCCCcccccccccCCcceeEeec---c---------cccCCCccEEeecEEEEecCCCCCCCCCCC
Q 010827 313 CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQ---P---------AIKGLESQIFEADLVLWTVGSKPLLPHVEP 380 (500)
Q Consensus 313 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~---~---------~~~~~~~~~l~~D~vi~a~G~~p~~~~~~~ 380 (500)
+++.++.. ..+.+... + ....++++++++|.||+++|++|+..+..+
T Consensus 235 ~i~~~~~~---------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~ 293 (352)
T PRK12770 235 RIIGEGRV---------------------EGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKE 293 (352)
T ss_pred eeecCCcE---------------------eEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhc
Confidence 98764311 12222100 0 001235578999999999999999776654
Q ss_pred CCCccCCCCCCCCCceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHCC
Q 010827 381 PNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 451 (500)
Q Consensus 381 ~~~~~~~~~~~~~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 451 (500)
. .+++++.+|++.||+.+++ +.|+||++|||+.. +..+..|+.+|+.+|.+|.+.|..
T Consensus 294 ~----~g~~~~~~g~i~vd~~~~t-~~~~vyaiGD~~~~--------~~~~~~A~~~g~~aa~~i~~~l~~ 351 (352)
T PRK12770 294 C----LGIELNRKGEIVVDEKHMT-SREGVFAAGDVVTG--------PSKIGKAIKSGLRAAQSIHEWLDL 351 (352)
T ss_pred c----cCceecCCCcEeeCCCccc-CCCCEEEEcccccC--------cchHHHHHHHHHHHHHHHHHHHhc
Confidence 1 2477888899999999998 89999999999985 568899999999999999998864
No 62
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.98 E-value=7.2e-31 Score=244.88 Aligned_cols=293 Identities=21% Similarity=0.272 Sum_probs=227.4
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC----------CcccCcchhhhc-c---------c----
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE----------RFVFKPMLYELL-S---------G---- 132 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~----------~~~~~~~~~~~~-~---------g---- 132 (500)
...+|.+|||||..|+++|+.+++ .|.++.|+|..- +.+-+.+++... . |
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~------~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~ 91 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAAS------HGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPIN 91 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHh------cCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccc
Confidence 446999999999999999999999 588999999873 122111221100 0 0
Q ss_pred ---cccC-------cc----ccccHHHHhccCCcEEEEeeEEEEecCCCCCCCCCceeecCcEEEcCCcc--EEEecEEE
Q 010827 133 ---EVDA-------WE----IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGL--IVEYDWLV 196 (500)
Q Consensus 133 ---~~~~-------~~----~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~--~~~~d~lI 196 (500)
..++ +. +.--|++.+.+..|+++.+....+++.+- ++...++. .+.+.+++
T Consensus 92 ~~~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v-------------~V~~~d~~~~~Ytak~iL 158 (478)
T KOG0405|consen 92 EEGSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEV-------------EVEVNDGTKIVYTAKHIL 158 (478)
T ss_pred cccCCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCce-------------EEEecCCeeEEEecceEE
Confidence 0000 00 11113455666789999988877776643 46555663 47889999
Q ss_pred EeCCCCCCCCCCCCccccccCCCChHHHHHHHHHHHHHHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEE
Q 010827 197 LSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAI 276 (500)
Q Consensus 197 lAtG~~p~~~~i~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv 276 (500)
+|||.+|.+|.|||.+-. .+.+.+.++.++ |||++|||+|++|+|+|..++..+.+ +.++
T Consensus 159 IAtGg~p~~PnIpG~E~g----idSDgff~Lee~-------------Pkr~vvvGaGYIavE~Agi~~gLgse---thlf 218 (478)
T KOG0405|consen 159 IATGGRPIIPNIPGAELG----IDSDGFFDLEEQ-------------PKRVVVVGAGYIAVEFAGIFAGLGSE---THLF 218 (478)
T ss_pred EEeCCccCCCCCCchhhc----cccccccchhhc-------------CceEEEEccceEEEEhhhHHhhcCCe---eEEE
Confidence 999999999999997532 245556666665 89999999999999999999999998 9999
Q ss_pred ecCCccCCCCCcchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCC
Q 010827 277 NVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLE 356 (500)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~ 356 (500)
.|.+.++..|++.+++.+.+.|+.+||++|.++.++++....+. ....+. ..
T Consensus 219 iR~~kvLR~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g---------------------~~~~i~-------~~ 270 (478)
T KOG0405|consen 219 IRQEKVLRGFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDG---------------------LELVIT-------SH 270 (478)
T ss_pred EecchhhcchhHHHHHHHHHHhhhcceeecccccceeeeecCCC---------------------ceEEEE-------ec
Confidence 99999999999999999999999999999999999999886531 112222 24
Q ss_pred ccEEeecEEEEecCCCCCCCCCCCCCCccCCCCCCCCCceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHH
Q 010827 357 SQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQ 436 (500)
Q Consensus 357 ~~~l~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~~~~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~ 436 (500)
+....+|.++||+|+.|++.-+... ..|++++.+|.|.||++.+| +.|+||++||++.- ..+...|+.
T Consensus 271 ~~i~~vd~llwAiGR~Pntk~L~le---~vGVk~~~~g~IivDeYq~T-nvp~I~avGDv~gk--------~~LTPVAia 338 (478)
T KOG0405|consen 271 GTIEDVDTLLWAIGRKPNTKGLNLE---NVGVKTDKNGAIIVDEYQNT-NVPSIWAVGDVTGK--------INLTPVAIA 338 (478)
T ss_pred cccccccEEEEEecCCCCcccccch---hcceeeCCCCCEEEeccccC-CCCceEEeccccCc--------EecchHHHh
Confidence 4555699999999999997665443 45899999999999999999 99999999999985 567788999
Q ss_pred HHHHHHHHHHHH
Q 010827 437 QADFAGWNLWAA 448 (500)
Q Consensus 437 ~g~~aa~~i~~~ 448 (500)
.|+.++..+.+.
T Consensus 339 agr~la~rlF~~ 350 (478)
T KOG0405|consen 339 AGRKLANRLFGG 350 (478)
T ss_pred hhhhHHHHhhcC
Confidence 999998887664
No 63
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.97 E-value=5.6e-31 Score=292.82 Aligned_cols=309 Identities=17% Similarity=0.114 Sum_probs=207.2
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEEe
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD 157 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (500)
..++|+|||||||||+||..|++ .|++|+|||+.+..+..... .++....+.++.....+++.+.++++..+
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~------~G~~VtV~E~~~~~GG~l~~--gip~~rl~~e~~~~~~~~l~~~Gv~~~~~ 500 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVK------YGVDVTVYEALHVVGGVLQY--GIPSFRLPRDIIDREVQRLVDIGVKIETN 500 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH------cCCcEEEEecCCCCcceeec--cCCccCCCHHHHHHHHHHHHHCCCEEEeC
Confidence 46899999999999999999999 69999999998765432111 11111223344445556677889999887
Q ss_pred eEEEEecCCCCCCCCCceeecCcEEEcCCcc-EEEecEEEEeCCCC-CCCCCCCCccccccCCCChHHHHHHHHHHHH--
Q 010827 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGL-IVEYDWLVLSLGAE-PKLDVVPGAAEFAFPFSTLEDACRVDRKLSE-- 233 (500)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~d~lIlAtG~~-p~~~~i~G~~~~~~~~~~~~~~~~~~~~l~~-- 233 (500)
.+... .++.++.. ...||+||||||+. |+.++|||.+. ..+.+..++.........
T Consensus 501 ~~vg~------------------~~~~~~l~~~~~yDaViIATGa~~pr~l~IpG~~l--~gV~~a~~fL~~~~~~~~~~ 560 (1006)
T PRK12775 501 KVIGK------------------TFTVPQLMNDKGFDAVFLGVGAGAPTFLGIPGEFA--GQVYSANEFLTRVNLMGGDK 560 (1006)
T ss_pred CccCC------------------ccCHHHHhhccCCCEEEEecCCCCCCCCCCCCcCC--CCcEEHHHHHHHHHhcCccc
Confidence 54321 12222211 24699999999995 88899999532 123344444333221000
Q ss_pred HHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCCCCcchHHHHHHHHHhCCcEEEcCceEEE
Q 010827 234 LERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRC 313 (500)
Q Consensus 234 ~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~ 313 (500)
..........+|+|+|||||++|+|+|..+.+.+.+. |+++.+.... .++.. ....+.+++.||++++++.+.+
T Consensus 561 ~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~--Vtiv~rr~~~--em~a~--~~e~~~a~eeGI~~~~~~~p~~ 634 (1006)
T PRK12775 561 FPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPT--VRCVYRRSEA--EAPAR--IEEIRHAKEEGIDFFFLHSPVE 634 (1006)
T ss_pred cccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCE--EEEEeecCcc--cCCCC--HHHHHHHHhCCCEEEecCCcEE
Confidence 0000000123799999999999999999998877643 8888765432 12211 1223567889999999999999
Q ss_pred EecCcc-ccccccCCCCCcccccccccCCcceeEe---ecc-cc-------cCCCccEEeecEEEEecCCCCCCCCCCCC
Q 010827 314 IRRVGE-FEASVKQPESGAIPNIAADKNSDKYILE---LQP-AI-------KGLESQIFEADLVLWTVGSKPLLPHVEPP 381 (500)
Q Consensus 314 i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~---~~~-~~-------~~~~~~~l~~D~vi~a~G~~p~~~~~~~~ 381 (500)
+..+++ .. .++.+. +.. +. ..++..++++|.||+++|+.|+..++...
T Consensus 635 i~~~~~G~v--------------------~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~ 694 (1006)
T PRK12775 635 IYVDAEGSV--------------------RGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQST 694 (1006)
T ss_pred EEeCCCCeE--------------------EEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChhhhhcc
Confidence 864321 11 122221 100 00 11233579999999999999997665432
Q ss_pred CCccCCCCCCCCCceEeCC-----CcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHCCCC
Q 010827 382 NNRLHDLPLNARGQAETDE-----TLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRP 453 (500)
Q Consensus 382 ~~~~~~~~~~~~g~i~vd~-----~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~ 453 (500)
.++.++.+|.|.+|+ .++| +.|+|||+|||+.. +.++..|+.+|+.||.+|...|.+..
T Consensus 695 ----~gl~l~~~G~I~vd~~~v~~~~~T-s~pgVFAaGDv~~G--------~~~vv~Ai~~Gr~AA~~I~~~L~~~~ 758 (1006)
T PRK12775 695 ----PGLALNKWGNIAADDGKLESTQST-NLPGVFAGGDIVTG--------GATVILAMGAGRRAARSIATYLRLGK 758 (1006)
T ss_pred ----CCcccCCCCcEEeCCCccccCcCC-CCCCEEEecCcCCC--------ccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 257788899999996 6788 99999999999976 67889999999999999999998653
No 64
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.97 E-value=4.3e-29 Score=258.94 Aligned_cols=304 Identities=17% Similarity=0.159 Sum_probs=198.8
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEEe
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD 157 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (500)
..++|+||||||+||++|..|++ .|++|+|+|+.+.++..... . ++......++.....+++++.|++++.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~------~G~~V~i~e~~~~~gG~l~~-g-ip~~~~~~~~~~~~~~~~~~~Gv~~~~~ 211 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILAR------AGVQVVVFDRHPEIGGLLTF-G-IPSFKLDKAVLSRRREIFTAMGIEFHLN 211 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH------cCCeEEEEecCCCCCceeee-c-CccccCCHHHHHHHHHHHHHCCCEEECC
Confidence 56899999999999999999998 68999999999875432211 0 1111112233334456677789998776
Q ss_pred eEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCC-CCCCCCCccccccCCCChHHHHHHH-HHHHHHH
Q 010827 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEP-KLDVVPGAAEFAFPFSTLEDACRVD-RKLSELE 235 (500)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p-~~~~i~G~~~~~~~~~~~~~~~~~~-~~l~~~~ 235 (500)
..... .+..++ ....||+||+|||+.+ ..+++||.+.. .+.+..++.... ..+..+.
T Consensus 212 ~~v~~------------------~~~~~~-~~~~~D~vilAtGa~~~~~~~i~g~~~~--gV~~a~~~l~~~~~~~~~~~ 270 (467)
T TIGR01318 212 CEVGR------------------DISLDD-LLEDYDAVFLGVGTYRSMRGGLPGEDAP--GVLQALPFLIANTRQLMGLP 270 (467)
T ss_pred CEeCC------------------ccCHHH-HHhcCCEEEEEeCCCCCCcCCCCCcCCC--CcEEHHHHHHHHHHHhcCCC
Confidence 32110 111111 1347999999999986 45678886421 122222221110 0010000
Q ss_pred Hh---ccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCcc-CCCCCcchHHHHHHHHHhCCcEEEcCceE
Q 010827 236 RR---NFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTI-CPTGTPGNREAALKVLSARKVQLVLGYFV 311 (500)
Q Consensus 236 ~~---~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~-~~~~~~~~~~~~~~~l~~~gV~i~~~~~v 311 (500)
.. ......+|+|+|||+|++|+++|..+.+.+.+. ||++++.+.. ++... .....+++.||++++++.+
T Consensus 271 ~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~--Vtvv~r~~~~~~~~~~-----~e~~~~~~~GV~~~~~~~~ 343 (467)
T TIGR01318 271 ESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAAS--VTCAYRRDEANMPGSR-----REVANAREEGVEFLFNVQP 343 (467)
T ss_pred ccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCe--EEEEEecCcccCCCCH-----HHHHHHHhcCCEEEecCCc
Confidence 00 000123689999999999999999988877532 9999986642 33221 2335567889999999999
Q ss_pred EEEecCccccccccCCCCCcccccccccCCcceeEee-cc---cc--------cCCCccEEeecEEEEecCCCCCC-CCC
Q 010827 312 RCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILEL-QP---AI--------KGLESQIFEADLVLWTVGSKPLL-PHV 378 (500)
Q Consensus 312 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~-~~---~~--------~~~~~~~l~~D~vi~a~G~~p~~-~~~ 378 (500)
+++..+++.. + ..+++.. .. .. ..++..++++|.||+++|++|+. .++
T Consensus 344 ~~i~~~~~g~-------v------------~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~ 404 (467)
T TIGR01318 344 VYIECDEDGR-------V------------TGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWL 404 (467)
T ss_pred EEEEECCCCe-------E------------EEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCccccc
Confidence 9997532100 0 1122210 00 00 11245689999999999999984 444
Q ss_pred CCCCCccCCCCCCCCCceEeC----CCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHC
Q 010827 379 EPPNNRLHDLPLNARGQAETD----ETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIN 450 (500)
Q Consensus 379 ~~~~~~~~~~~~~~~g~i~vd----~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 450 (500)
... +++++.+|++.|| .+++| +.|+||++|||+.. +.++..|+.+|+.+|.+|...|.
T Consensus 405 ~~~-----gl~~~~~g~i~vd~~~~~~~~T-~~~gVfa~GD~~~~--------~~~~~~Ai~~G~~aA~~i~~~L~ 466 (467)
T TIGR01318 405 AGH-----GITLDSWGRIITGDVSYLPYQT-TNPKIFAGGDAVRG--------ADLVVTAVAEGRQAAQGILDWLG 466 (467)
T ss_pred ccc-----CccCCCCCCEEeCCccccCccC-CCCCEEEECCcCCC--------ccHHHHHHHHHHHHHHHHHHHhc
Confidence 433 4778888999999 67888 89999999999986 56788999999999999998764
No 65
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.97 E-value=2.7e-29 Score=261.47 Aligned_cols=325 Identities=18% Similarity=0.156 Sum_probs=198.5
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEEe
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD 157 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (500)
..++|+||||||+|+++|..|++ .|++|+|||+.+........ .++.......+.....++++..+++++.+
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~------~g~~V~v~e~~~~~gG~l~~--gip~~~~~~~~~~~~~~~~~~~Gv~~~~~ 213 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNR------AGHTVTVFEREDRCGGLLMY--GIPNMKLDKAIVDRRIDLLSAEGIDFVTN 213 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH------cCCeEEEEecCCCCCceeec--cCCCccCCHHHHHHHHHHHHhCCCEEECC
Confidence 45799999999999999999998 68999999998864322110 01111111223333345667789999887
Q ss_pred eEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCC-CCCCCCCCccccccCCCChHHHHHHHHHHHH---
Q 010827 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAE-PKLDVVPGAAEFAFPFSTLEDACRVDRKLSE--- 233 (500)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~-p~~~~i~G~~~~~~~~~~~~~~~~~~~~l~~--- 233 (500)
.....+ +.. +.....||+||+|||+. |..+++||.+. ..+....++.........
T Consensus 214 ~~v~~~------------------~~~-~~~~~~~d~VilAtGa~~~~~l~i~G~~~--~gV~~~~~~l~~~~~~~~~~~ 272 (485)
T TIGR01317 214 TEIGVD------------------ISA-DELKEQFDAVVLAGGATKPRDLPIPGREL--KGIHYAMEFLPSATKALLGKD 272 (485)
T ss_pred CEeCCc------------------cCH-HHHHhhCCEEEEccCCCCCCcCCCCCcCC--CCcEeHHHHHHHHhhhhcccc
Confidence 433211 111 11235799999999998 88889999642 112222222111111000
Q ss_pred HHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCCCC-----cc------hHHHHHHHHHhCC
Q 010827 234 LERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGT-----PG------NREAALKVLSARK 302 (500)
Q Consensus 234 ~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~~~-----~~------~~~~~~~~l~~~g 302 (500)
..........+|+|+|||+|++|+|+|..+.+.+... |+++++.+....... +. ......+.++..|
T Consensus 273 ~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~--V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~g 350 (485)
T TIGR01317 273 FKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAAS--VHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYG 350 (485)
T ss_pred ccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCE--EEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcC
Confidence 0000000123789999999999999988887776532 999987665432211 11 1112233333456
Q ss_pred cEE-EcCceEEEEecCc-cccccccCCCCCcccccccccCCcceeEeecccccCCCccEEeecEEEEecCCC-CCCCCCC
Q 010827 303 VQL-VLGYFVRCIRRVG-EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK-PLLPHVE 379 (500)
Q Consensus 303 V~i-~~~~~v~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~-p~~~~~~ 379 (500)
|.+ +.+..+.+|..++ +....+....+...++ ..++..... ..++..++++|.||+++|.. |+.+++.
T Consensus 351 v~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~-----~~Gr~~p~~----~~g~~~~i~~D~Vi~AiG~~~p~~~~~~ 421 (485)
T TIGR01317 351 RDPREYSILTKEFIGDDEGKVTALRTVRVEWKKS-----QDGKWQFVE----IPGSEEVFEADLVLLAMGFVGPEQILLD 421 (485)
T ss_pred ccceEEecCcEEEEEcCCCeEEEEEEEEEEeccC-----CCCCcccee----cCCceEEEECCEEEEccCcCCCcccccc
Confidence 644 5677788886532 1110000000000000 001100000 11244589999999999996 8878776
Q ss_pred CCCCccCCCCCCCCCceEe-CCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHCCCCCCC
Q 010827 380 PPNNRLHDLPLNARGQAET-DETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLP 456 (500)
Q Consensus 380 ~~~~~~~~~~~~~~g~i~v-d~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~~~p 456 (500)
.. +++++.+|++.+ |+.++| +.|+||++|||+.. +.++..|+.+|+.||.+|...|.+.+..|
T Consensus 422 ~~-----gl~~~~~G~i~~~~~~~~T-s~~gVfAaGD~~~g--------~~~~~~Av~~G~~AA~~i~~~L~g~~~~~ 485 (485)
T TIGR01317 422 DF-----GVKKTRRGNISAGYDDYST-SIPGVFAAGDCRRG--------QSLIVWAINEGRKAAAAVDRYLMGSSVLP 485 (485)
T ss_pred cc-----CcccCCCCCEEecCCCceE-CCCCEEEeeccCCC--------cHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 54 477788898855 578888 99999999999875 56888999999999999999998876554
No 66
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.96 E-value=1.6e-28 Score=265.11 Aligned_cols=305 Identities=15% Similarity=0.123 Sum_probs=199.0
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEE
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFK 156 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~ 156 (500)
...++|+|||||||||+||..|++ .|++|+|||+.+.++..... ..+......++.....+++++.++++..
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~------~G~~V~V~E~~~~~GG~l~~--gip~~~l~~~~~~~~~~~~~~~Gv~~~~ 396 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLAR------NGVAVTVYDRHPEIGGLLTF--GIPAFKLDKSLLARRREIFSAMGIEFEL 396 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHH------CCCeEEEEecCCCCCceeee--cCCCccCCHHHHHHHHHHHHHCCeEEEC
Confidence 356899999999999999999999 68999999998765432211 0111111222333344566677888887
Q ss_pred eeEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCC-CCCCCCCccccccCCCChHHHHHHHHHHHHHH
Q 010827 157 DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEP-KLDVVPGAAEFAFPFSTLEDACRVDRKLSELE 235 (500)
Q Consensus 157 ~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p-~~~~i~G~~~~~~~~~~~~~~~~~~~~l~~~~ 235 (500)
+..... .++.++. ...||+||+|||+.. ..+.+||.+.. .+.+..++. ........
T Consensus 397 ~~~v~~------------------~i~~~~~-~~~~DavilAtGa~~~~~l~i~g~~~~--Gv~~a~~~l--~~~~~~~~ 453 (654)
T PRK12769 397 NCEVGK------------------DISLESL-LEDYDAVFVGVGTYRSMKAGLPNEDAP--GVYDALPFL--IANTKQVM 453 (654)
T ss_pred CCEeCC------------------cCCHHHH-HhcCCEEEEeCCCCCCCCCCCCCCCCC--CeEEhHHHH--HHHHhhhc
Confidence 642211 1111111 247999999999864 45678875421 111111111 11111100
Q ss_pred Hh------ccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCcc-CCCCCcchHHHHHHHHHhCCcEEEcC
Q 010827 236 RR------NFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTI-CPTGTPGNREAALKVLSARKVQLVLG 308 (500)
Q Consensus 236 ~~------~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~-~~~~~~~~~~~~~~~l~~~gV~i~~~ 308 (500)
.. ......+|+|+|||+|++|+|+|..+.+.+.+. |+++++.+.. ++.. ....+.+++.||+++++
T Consensus 454 ~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~--Vt~i~~~~~~~~~~~-----~~e~~~~~~~Gv~~~~~ 526 (654)
T PRK12769 454 GLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASN--VTCAYRRDEANMPGS-----KKEVKNAREEGANFEFN 526 (654)
T ss_pred cCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCe--EEEeEecCCCCCCCC-----HHHHHHHHHcCCeEEec
Confidence 00 000123689999999999999999888877532 9999886543 2221 23345688899999999
Q ss_pred ceEEEEecCccccccccCCCCCcccccccccCCcceeEe-ecc---cc--------cCCCccEEeecEEEEecCCCCCC-
Q 010827 309 YFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILE-LQP---AI--------KGLESQIFEADLVLWTVGSKPLL- 375 (500)
Q Consensus 309 ~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~-~~~---~~--------~~~~~~~l~~D~vi~a~G~~p~~- 375 (500)
..++++..+++.. + .+|.+. ... .. ..++..++++|.||+|+|+.|+.
T Consensus 527 ~~~~~i~~~~~g~-------v------------~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~ 587 (654)
T PRK12769 527 VQPVALELNEQGH-------V------------CGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGM 587 (654)
T ss_pred cCcEEEEECCCCe-------E------------EEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCcc
Confidence 9999986432100 0 122221 000 00 01234579999999999999985
Q ss_pred CCCCCCCCccCCCCCCCCCceEeCC----CcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHCC
Q 010827 376 PHVEPPNNRLHDLPLNARGQAETDE----TLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 451 (500)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~g~i~vd~----~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 451 (500)
.+++.. +++++.+|.|.||. +++| +.|+|||+||++.. +.++..|+.+|+.||.+|.+.|..
T Consensus 588 ~~~~~~-----gl~~~~~G~i~vd~~~~~~~~T-s~~gVfAaGD~~~g--------~~~vv~Ai~~Gr~AA~~I~~~L~~ 653 (654)
T PRK12769 588 PWLESH-----GVTVDKWGRIIADVESQYRYQT-SNPKIFAGGDAVRG--------ADLVVTAMAEGRHAAQGIIDWLGV 653 (654)
T ss_pred cccccc-----CCcCCCCCCEEeCCCcccCccc-CCCCEEEcCCcCCC--------CcHHHHHHHHHHHHHHHHHHHhCc
Confidence 455443 47888999999985 4788 99999999999986 678899999999999999998875
Q ss_pred C
Q 010827 452 R 452 (500)
Q Consensus 452 ~ 452 (500)
+
T Consensus 654 ~ 654 (654)
T PRK12769 654 K 654 (654)
T ss_pred C
Confidence 3
No 67
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.96 E-value=1.7e-27 Score=244.26 Aligned_cols=318 Identities=16% Similarity=0.125 Sum_probs=199.9
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEE
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFK 156 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~ 156 (500)
..+++|+|||||||||+||..|++. .+|++|+|||+.+..+.... +...+.......+...+..++...+++|+.
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~----~~g~~Vtv~E~~p~pgGlvr-~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~ 98 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKA----HDGARVDIIERLPTPFGLVR-SGVAPDHPETKNVTNQFSRVATDDRVSFFG 98 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhh----CCCCeEEEEecCCCCcceEe-eccCCCcchhHHHHHHHHHHHHHCCeEEEc
Confidence 4568999999999999999999862 26999999999986443221 112223333333444566666667788876
Q ss_pred eeEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCC-CCCCCCCccccccCCCChHHHHHHHHHHHHHH
Q 010827 157 DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEP-KLDVVPGAAEFAFPFSTLEDACRVDRKLSELE 235 (500)
Q Consensus 157 ~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p-~~~~i~G~~~~~~~~~~~~~~~~~~~~l~~~~ 235 (500)
+..... .+++++. ...||+||||||+.+ ..++|||.+. ..+++..++...........
T Consensus 99 nv~vg~------------------dvtl~~L-~~~yDaVIlAtGa~~~~~l~IpG~d~--~gV~~a~~fl~~~ng~~d~~ 157 (491)
T PLN02852 99 NVTLGR------------------DVSLSEL-RDLYHVVVLAYGAESDRRLGIPGEDL--PGVLSAREFVWWYNGHPDCV 157 (491)
T ss_pred CEEECc------------------cccHHHH-hhhCCEEEEecCCCCCCCCCCCCCCC--CCeEEHHHHHHHhhcchhhh
Confidence 532211 2444444 347999999999985 6788999642 12233333322111100000
Q ss_pred HhccCCCCccEEEEECCChhHHHHHHHHHHH----------------Hhh--cCeEEEEecCCccCCCCC-cch------
Q 010827 236 RRNFGKDSLIRVAVVGCGYSGVELAATVSER----------------LEE--KGIVQAINVETTICPTGT-PGN------ 290 (500)
Q Consensus 236 ~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~----------------~~~--~~~vtlv~~~~~~~~~~~-~~~------ 290 (500)
........+++|+|||+|++|+|+|..|.+. ... -..|+++.|....-..+. .++
T Consensus 158 ~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l 237 (491)
T PLN02852 158 HLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGL 237 (491)
T ss_pred hhhhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhcc
Confidence 0000012368999999999999999998764 111 123999988764221111 111
Q ss_pred -------------------------------HHHHHHHHHh---------CCcEEEcCceEEEEecCc---cccccccCC
Q 010827 291 -------------------------------REAALKVLSA---------RKVQLVLGYFVRCIRRVG---EFEASVKQP 327 (500)
Q Consensus 291 -------------------------------~~~~~~~l~~---------~gV~i~~~~~v~~i~~~~---~~~~~~~~~ 327 (500)
.+.+.+...+ .+|.|++...+++|..+. +..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v------ 311 (491)
T PLN02852 238 KNVRVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHV------ 311 (491)
T ss_pred CCCceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcE------
Confidence 1111112112 579999999999997421 111
Q ss_pred CCCcccccccccCCcceeEeecc---c--------ccCCCccEEeecEEEEecCCC--CCCCC-CCCCCCccCCCCCCCC
Q 010827 328 ESGAIPNIAADKNSDKYILELQP---A--------IKGLESQIFEADLVLWTVGSK--PLLPH-VEPPNNRLHDLPLNAR 393 (500)
Q Consensus 328 ~~~~~~~~~~~~~~~~v~l~~~~---~--------~~~~~~~~l~~D~vi~a~G~~--p~~~~-~~~~~~~~~~~~~~~~ 393 (500)
.++.++... . ..+++.++++||.||.++|++ |...+ +.. ..++..+.+
T Consensus 312 --------------~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~----~~gv~~n~~ 373 (491)
T PLN02852 312 --------------AGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDH----KRGVVPNVH 373 (491)
T ss_pred --------------EEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCcccc----CcCeeECCC
Confidence 223332110 0 012345689999999999998 44443 222 124567788
Q ss_pred CceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHCCC
Q 010827 394 GQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDR 452 (500)
Q Consensus 394 g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~ 452 (500)
|+|.+|..++| +.|+||++|||...+ ...+..++.+|+.++.+|..++...
T Consensus 374 G~V~~d~~~~T-~ipGvyAaGDi~~Gp-------~gvI~t~~~dA~~ta~~i~~d~~~~ 424 (491)
T PLN02852 374 GRVLSSASGAD-TEPGLYVVGWLKRGP-------TGIIGTNLTCAEETVASIAEDLEQG 424 (491)
T ss_pred ceEEeCCCCcc-CCCCEEEeeeEecCC-------CCeeeecHhhHHHHHHHHHHHHHcC
Confidence 99999988888 899999999999862 3478899999999999999998653
No 68
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.2e-28 Score=213.38 Aligned_cols=294 Identities=16% Similarity=0.138 Sum_probs=220.8
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCC---c-ccCc-------chhhhccccccCccccccHHHHh
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER---F-VFKP-------MLYELLSGEVDAWEIAPRFADLL 147 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~---~-~~~~-------~~~~~~~g~~~~~~~~~~~~~~~ 147 (500)
..+|+|||+|||+..||+++++ ..++-+|||-.-. - +.+. .++.+ +..+.-.++...++++.
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaar------aelkPllfEG~~~~~i~pGGQLtTTT~veNfPGF-Pdgi~G~~l~d~mrkqs 80 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAAR------AELKPLLFEGMMANGIAPGGQLTTTTDVENFPGF-PDGITGPELMDKMRKQS 80 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhh------cccCceEEeeeeccCcCCCceeeeeeccccCCCC-CcccccHHHHHHHHHHH
Confidence 4689999999999999999999 6788999986421 1 1111 11111 12223345667788888
Q ss_pred ccCCcEEEEeeEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCCCCCCCCCcccc-----ccCCCChH
Q 010827 148 ANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEF-----AFPFSTLE 222 (500)
Q Consensus 148 ~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p~~~~i~G~~~~-----~~~~~~~~ 222 (500)
.++|.+++...|.+++...+. |.+.++ .+.+.+|.||+|||+..+...+||..+. ....|..+
T Consensus 81 ~r~Gt~i~tEtVskv~~sskp-----------F~l~td-~~~v~~~avI~atGAsAkRl~~pg~ge~~fWqrGiSaCAVC 148 (322)
T KOG0404|consen 81 ERFGTEIITETVSKVDLSSKP-----------FKLWTD-ARPVTADAVILATGASAKRLHLPGEGEGEFWQRGISACAVC 148 (322)
T ss_pred HhhcceeeeeehhhccccCCC-----------eEEEec-CCceeeeeEEEecccceeeeecCCCCcchHHhcccchhhcc
Confidence 889999999999999887764 456554 4589999999999999888888886222 12223333
Q ss_pred HHHHHHHHHHHHHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCCCCcchHHHHHHHHH-hC
Q 010827 223 DACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLS-AR 301 (500)
Q Consensus 223 ~~~~~~~~l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~~~~~~~~~~~~~l~-~~ 301 (500)
|... .+ -++|-.+|||||++++|-|.+|..++.+ |.+++|.+.+ ..+..++++.. .-
T Consensus 149 DGaa---pi----------frnk~laVIGGGDsA~EEA~fLtkyask---Vyii~Rrd~f------RAs~~Mq~ra~~np 206 (322)
T KOG0404|consen 149 DGAA---PI----------FRNKPLAVIGGGDSAMEEALFLTKYASK---VYIIHRRDHF------RASKIMQQRAEKNP 206 (322)
T ss_pred cCcc---hh----------hcCCeeEEEcCcHHHHHHHHHHHhhccE---EEEEEEhhhh------hHHHHHHHHHhcCC
Confidence 3221 00 1167899999999999999999999888 9999999887 45555655544 56
Q ss_pred CcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccEEeecEEEEecCCCCCCCCCCCC
Q 010827 302 KVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPP 381 (500)
Q Consensus 302 gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~p~~~~~~~~ 381 (500)
+|++++++.+.+...+++.. +++.++.. .+++...++++-+++++|..|++.+++.
T Consensus 207 nI~v~~nt~~~ea~gd~~~l--------------------~~l~ikn~---~tge~~dl~v~GlFf~IGH~Pat~~l~g- 262 (322)
T KOG0404|consen 207 NIEVLYNTVAVEALGDGKLL--------------------NGLRIKNV---KTGEETDLPVSGLFFAIGHSPATKFLKG- 262 (322)
T ss_pred CeEEEechhhhhhccCcccc--------------------cceEEEec---ccCcccccccceeEEEecCCchhhHhcC-
Confidence 99999999998888765433 56666533 3347788999999999999999999975
Q ss_pred CCccCCCCCCCCCceEeC-CCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHC
Q 010827 382 NNRLHDLPLNARGQAETD-ETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIN 450 (500)
Q Consensus 382 ~~~~~~~~~~~~g~i~vd-~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 450 (500)
++++|.+|+|.+- ..-.| ++|++||+||+.... .+++.+|...|-.+|......|.
T Consensus 263 -----qve~d~~GYi~t~pgts~T-svpG~FAAGDVqD~k-------yRQAvTaAgsGciaaldAe~yL~ 319 (322)
T KOG0404|consen 263 -----QVELDEDGYIVTRPGTSLT-SVPGVFAAGDVQDKK-------YRQAVTAAGSGCIAALDAERYLT 319 (322)
T ss_pred -----ceeeccCceEEeccCcccc-cccceeeccccchHH-------HHHHHhhhccchhhhhhHHHHhh
Confidence 6899999999998 45556 999999999999852 56777888888888877766665
No 69
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=8.7e-29 Score=230.92 Aligned_cols=297 Identities=21% Similarity=0.229 Sum_probs=223.7
Q ss_pred CCCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcc----hhhhcccc-ccCccccccHHHHhccC
Q 010827 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPM----LYELLSGE-VDAWEIAPRFADLLANT 150 (500)
Q Consensus 76 ~~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~----~~~~~~g~-~~~~~~~~~~~~~~~~~ 150 (500)
....+||+||||||||-+||.+.+| +|.+.-++-. +|+.+.+ ..+++.-. .+-..+...+....+++
T Consensus 208 ~k~~yDVLvVGgGPAgaaAAiYaAR------KGiRTGl~ae--rfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y 279 (520)
T COG3634 208 AKDAYDVLVVGGGPAGAAAAIYAAR------KGIRTGLVAE--RFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQY 279 (520)
T ss_pred ccCCceEEEEcCCcchhHHHHHHHh------hcchhhhhhh--hhCCeeccccchhheeccccccchHHHHHHHHHHhhc
Confidence 4567999999999999999999999 5777766532 3333332 22222111 12233455677888899
Q ss_pred CcEEEEe-eEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCCCCCCCCCcccc---ccCCCChHHHHH
Q 010827 151 GVQFFKD-RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEF---AFPFSTLEDACR 226 (500)
Q Consensus 151 ~v~~~~~-~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p~~~~i~G~~~~---~~~~~~~~~~~~ 226 (500)
.+++++. +++++.+.... -...++++++|..+.++.+|++||++.+-..+||.+++ ...+|..||..-
T Consensus 280 ~vDimn~qra~~l~~a~~~--------~~l~ev~l~nGavLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHCDGPL 351 (520)
T COG3634 280 DVDVMNLQRASKLEPAAVE--------GGLIEVELANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPL 351 (520)
T ss_pred CchhhhhhhhhcceecCCC--------CccEEEEecCCceeccceEEEecCcchhcCCCCchHHHhhCCeeeCCCCCCcc
Confidence 9999885 67777664221 00137999999999999999999999999999998643 234566666443
Q ss_pred HHHHHHHHHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCCCCcchHHHHHHHHHh-CCcEE
Q 010827 227 VDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSA-RKVQL 305 (500)
Q Consensus 227 ~~~~l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~~~~~~~~~~~~~l~~-~gV~i 305 (500)
+. +|+|+|||||++|+|.|..|+....+ ||+++-.+.+ .....+++.|.. .+|++
T Consensus 352 F~---------------gK~VAVIGGGNSGvEAAIDLAGiv~h---VtllEF~~eL------kAD~VLq~kl~sl~Nv~i 407 (520)
T COG3634 352 FK---------------GKRVAVIGGGNSGVEAAIDLAGIVEH---VTLLEFAPEL------KADAVLQDKLRSLPNVTI 407 (520)
T ss_pred cC---------------CceEEEECCCcchHHHHHhHHhhhhe---eeeeecchhh------hhHHHHHHHHhcCCCcEE
Confidence 32 68999999999999999999988887 9999877665 445566777765 58999
Q ss_pred EcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccEEeecEEEEecCCCCCCCCCCCCCCcc
Q 010827 306 VLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRL 385 (500)
Q Consensus 306 ~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~p~~~~~~~~~~~~ 385 (500)
+++..-++|.++++.. .++.... + ..++...++-+-|++-+|..||++|++.
T Consensus 408 i~na~Ttei~Gdg~kV--------------------~Gl~Y~d--r-~sge~~~l~LeGvFVqIGL~PNT~WLkg----- 459 (520)
T COG3634 408 ITNAQTTEVKGDGDKV--------------------TGLEYRD--R-VSGEEHHLELEGVFVQIGLLPNTEWLKG----- 459 (520)
T ss_pred EecceeeEEecCCcee--------------------cceEEEe--c-cCCceeEEEeeeeEEEEecccChhHhhc-----
Confidence 9999999999986432 3444442 1 2335567788999999999999999986
Q ss_pred CCCCCCCCCceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 010827 386 HDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAI 449 (500)
Q Consensus 386 ~~~~~~~~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l 449 (500)
.++++++|.|.||....| +.|+|||+|||...+ .+++..|+.+|..++-+...+|
T Consensus 460 -~vel~~rGEIivD~~g~T-svpGvFAAGD~T~~~-------yKQIIIamG~GA~AaL~AFDyL 514 (520)
T COG3634 460 -AVELNRRGEIIVDARGET-NVPGVFAAGDCTTVP-------YKQIIIAMGEGAKASLSAFDYL 514 (520)
T ss_pred -hhhcCcCccEEEecCCCc-CCCceeecCcccCCc-------cceEEEEecCcchhhhhhhhhh
Confidence 478999999999999999 999999999999874 4677778888888777655544
No 70
>PRK13984 putative oxidoreductase; Provisional
Probab=99.96 E-value=2.7e-27 Score=254.17 Aligned_cols=318 Identities=16% Similarity=0.101 Sum_probs=194.1
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEE
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFK 156 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~ 156 (500)
...++|+|||+|+||+++|..|++ .|++|+|||+.+........ .++....+..+.....+++++.+++++.
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~------~G~~v~vie~~~~~gG~~~~--~i~~~~~~~~~~~~~~~~~~~~gv~~~~ 352 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLAT------MGYEVTVYESLSKPGGVMRY--GIPSYRLPDEALDKDIAFIEALGVKIHL 352 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHH------CCCeEEEEecCCCCCceEee--cCCcccCCHHHHHHHHHHHHHCCcEEEC
Confidence 456899999999999999999999 68999999998865432211 0111111122223334566777888887
Q ss_pred eeEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCC-CCCCCCCCccccccCCCChHHHH-HHHHHHHHH
Q 010827 157 DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAE-PKLDVVPGAAEFAFPFSTLEDAC-RVDRKLSEL 234 (500)
Q Consensus 157 ~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~-p~~~~i~G~~~~~~~~~~~~~~~-~~~~~l~~~ 234 (500)
+.....+ +..++ ....||+||+|||+. |+.+++||.+.. .+.+..+.. .+...+.
T Consensus 353 ~~~v~~~------------------~~~~~-~~~~yD~vilAtGa~~~r~l~i~G~~~~--gv~~a~~~l~~~~~~~~-- 409 (604)
T PRK13984 353 NTRVGKD------------------IPLEE-LREKHDAVFLSTGFTLGRSTRIPGTDHP--DVIQALPLLREIRDYLR-- 409 (604)
T ss_pred CCEeCCc------------------CCHHH-HHhcCCEEEEEcCcCCCccCCCCCcCCc--CeEeHHHHHHHHHhhhc--
Confidence 6432111 11111 235799999999987 578889996421 112222221 1211110
Q ss_pred HHhccCCCCccEEEEECCChhHHHHHHHHHHHHhh---cCeEEEEecCCccCCCCCcchHHHHHHHHHhCCcEEEcCceE
Q 010827 235 ERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEE---KGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFV 311 (500)
Q Consensus 235 ~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~---~~~vtlv~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v 311 (500)
........+|+|+|||||++|+|+|..+++.+.. ...|+++.... ....++... ..+.+ +.+.||+++++..+
T Consensus 410 -~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r-~~~~~~~~~-~e~~~-~~~~GV~i~~~~~~ 485 (604)
T PRK13984 410 -GEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLER-TFEEMPADM-EEIEE-GLEEGVVIYPGWGP 485 (604)
T ss_pred -cCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEecccc-CcccCCCCH-HHHHH-HHHcCCEEEeCCCC
Confidence 0000012268999999999999999999876531 01277764321 122232222 22333 44679999999999
Q ss_pred EEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccEEeecEEEEecCCCCCCCCCCCCCCccCCCCCC
Q 010827 312 RCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLN 391 (500)
Q Consensus 312 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~~ 391 (500)
+++..+++... .+.+..........++..... ..+++.++++|.||+++|++|+.+++.... ..+++.
T Consensus 486 ~~i~~~~g~v~-----~v~~~~~~~~~~~~G~~~~~~----~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~--~~~l~~- 553 (604)
T PRK13984 486 MEVVIENDKVK-----GVKFKKCVEVFDEEGRFNPKF----DESDQIIVEADMVVEAIGQAPDYSYLPEEL--KSKLEF- 553 (604)
T ss_pred EEEEccCCEEE-----EEEEEEEeeccCCCCCcccee----cCCceEEEECCEEEEeeCCCCChhhhhhhh--ccCccc-
Confidence 88865331110 000000000000001100000 112456899999999999999988765311 012434
Q ss_pred CCCceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHCC
Q 010827 392 ARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 451 (500)
Q Consensus 392 ~~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 451 (500)
++|+|.||+++|| +.|+|||+|||+.. + ....|+.+|+.||.+|...|.+
T Consensus 554 ~~G~i~vd~~~~T-s~~gVfAaGD~~~~--------~-~~v~Ai~~G~~AA~~I~~~L~~ 603 (604)
T PRK13984 554 VRGRILTNEYGQT-SIPWLFAGGDIVHG--------P-DIIHGVADGYWAAEGIDMYLRK 603 (604)
T ss_pred cCCeEEeCCCCcc-CCCCEEEecCcCCc--------h-HHHHHHHHHHHHHHHHHHHhcc
Confidence 4688999999999 99999999999985 3 4578999999999999998864
No 71
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.2e-28 Score=227.36 Aligned_cols=206 Identities=21% Similarity=0.299 Sum_probs=166.7
Q ss_pred cEEEecEEEEeCCCCCCCCCCCCccccccCCCChHHHHHHHHHHHHHHHhccCCCCccEEEEECCChhHHHHHHHHHHHH
Q 010827 188 LIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERL 267 (500)
Q Consensus 188 ~~~~~d~lIlAtG~~p~~~~i~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~ 267 (500)
+.+.++.+++|||.+|+.|+|||..+..+ +.+|...+... |-+-+|||+|.+++|+|.+|+..+
T Consensus 158 ~~~ta~~fvIatG~RPrYp~IpG~~Ey~I---TSDDlFsl~~~-------------PGkTLvVGa~YVaLECAgFL~gfg 221 (503)
T KOG4716|consen 158 RFLTAENFVIATGLRPRYPDIPGAKEYGI---TSDDLFSLPYE-------------PGKTLVVGAGYVALECAGFLKGFG 221 (503)
T ss_pred EEeecceEEEEecCCCCCCCCCCceeeee---cccccccccCC-------------CCceEEEccceeeeehhhhHhhcC
Confidence 36889999999999999999999766543 45565555443 668899999999999999999998
Q ss_pred hhcCeEEEEecCCccCCCCCcchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEe
Q 010827 268 EEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILE 347 (500)
Q Consensus 268 ~~~~~vtlv~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~ 347 (500)
.+ ||++.| ..++..|+.++.+.+.+.|+++||+|...+.+..++..++ +.+.+.
T Consensus 222 ~~---vtVmVR-SI~LrGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~----------------------g~l~v~ 275 (503)
T KOG4716|consen 222 YD---VTVMVR-SILLRGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDD----------------------GKLRVF 275 (503)
T ss_pred CC---cEEEEE-EeecccccHHHHHHHHHHHHHhCCceeecccceeeeeccC----------------------CcEEEE
Confidence 88 999998 6678899999999999999999999999988888876543 444444
Q ss_pred ecccccCCCccEEeecEEEEecCCCCCCCCCCCCCCccCCCCCCC-CCceEeCCCcccCCCCCEEEecccccccCCCCCC
Q 010827 348 LQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNA-RGQAETDETLCVKGHPRIFALGDSSALRDSSGRP 426 (500)
Q Consensus 348 ~~~~~~~~~~~~l~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~~~-~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~ 426 (500)
......+ ++-+-++|.|+||+|+.+.++-+... ..|+..++ .|.|.+|+.-+| +.|+|||+||....
T Consensus 276 ~k~t~t~-~~~~~~ydTVl~AiGR~~~~~~l~L~---~~GVk~n~ks~KI~v~~~e~t-~vp~vyAvGDIl~~------- 343 (503)
T KOG4716|consen 276 YKNTNTG-EEGEEEYDTVLWAIGRKALTDDLNLD---NAGVKTNEKSGKIPVDDEEAT-NVPYVYAVGDILED------- 343 (503)
T ss_pred eeccccc-ccccchhhhhhhhhccccchhhcCCC---ccceeecccCCccccChHHhc-CCCceEEecceecC-------
Confidence 3322222 44455799999999999987655433 45788854 689999999999 99999999999985
Q ss_pred CCchHHHHHHHHHHHHHHHHH
Q 010827 427 LPATAQVAFQQADFAGWNLWA 447 (500)
Q Consensus 427 ~~~~~~~A~~~g~~aa~~i~~ 447 (500)
.|.+...|+..|+.+|+.|..
T Consensus 344 kpELTPvAIqsGrlLa~Rlf~ 364 (503)
T KOG4716|consen 344 KPELTPVAIQSGRLLARRLFA 364 (503)
T ss_pred CcccchhhhhhchHHHHHHhc
Confidence 278888999999999999864
No 72
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.95 E-value=5.6e-27 Score=252.04 Aligned_cols=306 Identities=15% Similarity=0.141 Sum_probs=198.2
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEEe
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD 157 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (500)
..++|+||||||+||++|..|++ .|++|+|||+.+.++.... .......++ ..+.....++++..|++++.+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~------~G~~Vtv~e~~~~~GG~l~-~gip~~~l~-~~~~~~~~~~~~~~Gv~~~~~ 380 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILAR------AGVQVDVFDRHPEIGGMLT-FGIPPFKLD-KTVLSQRREIFTAMGIDFHLN 380 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH------cCCcEEEEeCCCCCCCeee-ccCCcccCC-HHHHHHHHHHHHHCCeEEEcC
Confidence 46899999999999999999999 6899999999987543211 011111111 222233446667789998876
Q ss_pred eEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCC-CCCCCCCccccccCCCChHHHHHHH-HHHHHHH
Q 010827 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEP-KLDVVPGAAEFAFPFSTLEDACRVD-RKLSELE 235 (500)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p-~~~~i~G~~~~~~~~~~~~~~~~~~-~~l~~~~ 235 (500)
..... .++.++ ....||+||+|||+.+ ..+.+||.+.. .+.+..++.... ..+..+.
T Consensus 381 ~~v~~------------------~~~~~~-l~~~~DaV~latGa~~~~~~~i~g~~~~--gv~~a~~~l~~~~~~~~~~~ 439 (639)
T PRK12809 381 CEIGR------------------DITFSD-LTSEYDAVFIGVGTYGMMRADLPHEDAP--GVIQALPFLTAHTRQLMGLP 439 (639)
T ss_pred CccCC------------------cCCHHH-HHhcCCEEEEeCCCCCCCCCCCCCCccC--CcEeHHHHHHHHHHhhccCc
Confidence 42111 112222 2357999999999874 45778885421 122222221110 0010000
Q ss_pred Hh-c--cCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCcc-CCCCCcchHHHHHHHHHhCCcEEEcCceE
Q 010827 236 RR-N--FGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTI-CPTGTPGNREAALKVLSARKVQLVLGYFV 311 (500)
Q Consensus 236 ~~-~--~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~-~~~~~~~~~~~~~~~l~~~gV~i~~~~~v 311 (500)
.. . .....+|+|+|||+|.+++++|..+.+.+.+. |+++++.+.. ++.. ...+ ..+++.||++++++.+
T Consensus 440 ~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~--Vt~v~rr~~~~~~~~----~~e~-~~a~~eGv~~~~~~~~ 512 (639)
T PRK12809 440 ESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAAS--VTCAYRRDEVSMPGS----RKEV-VNAREEGVEFQFNVQP 512 (639)
T ss_pred cccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCe--EEEeeecCcccCCCC----HHHH-HHHHHcCCeEEeccCC
Confidence 00 0 01124789999999999999999888777532 9999986543 2222 1222 3467889999999999
Q ss_pred EEEecCccccccccCCCCCcccccccccCCcceeEe-ecc---cc--------cCCCccEEeecEEEEecCCCCCC-CCC
Q 010827 312 RCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILE-LQP---AI--------KGLESQIFEADLVLWTVGSKPLL-PHV 378 (500)
Q Consensus 312 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~-~~~---~~--------~~~~~~~l~~D~vi~a~G~~p~~-~~~ 378 (500)
++|..+++.. + .++.+. ... .. ..++..++++|.||+++|++|+. .++
T Consensus 513 ~~i~~~~~g~-------v------------~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~ 573 (639)
T PRK12809 513 QYIACDEDGR-------L------------TAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWL 573 (639)
T ss_pred EEEEECCCCe-------E------------EEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCccccc
Confidence 9997532100 0 112111 100 00 11245689999999999999974 444
Q ss_pred CCCCCccCCCCCCCCCceEeCC----CcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHCCC
Q 010827 379 EPPNNRLHDLPLNARGQAETDE----TLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDR 452 (500)
Q Consensus 379 ~~~~~~~~~~~~~~~g~i~vd~----~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~ 452 (500)
... +++++.+|++.+|+ +++| +.|+|||+||+... +.++..|+.+|+.||.+|...|.++
T Consensus 574 ~~~-----gl~~~~~G~i~vd~~~~~~~~T-s~~gVfA~GD~~~g--------~~~vv~Ai~~Gr~AA~~i~~~l~~~ 637 (639)
T PRK12809 574 QGS-----GIKLDKWGLIQTGDVGYLPTQT-HLKKVFAGGDAVHG--------ADLVVTAMAAGRQAARDMLTLFDTK 637 (639)
T ss_pred ccc-----CcccCCCCCEEeCCCcccCccc-CCCCEEEcCCCCCC--------chHHHHHHHHHHHHHHHHHHHHhhh
Confidence 433 47788899999985 4788 99999999999986 6688999999999999999988653
No 73
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.95 E-value=9.9e-27 Score=247.43 Aligned_cols=302 Identities=21% Similarity=0.167 Sum_probs=195.4
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEE
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFK 156 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~ 156 (500)
...++|+|||+||+||++|..|++ .|++|+++|+.+.++..... .++....+.++.....+.+.+.++++..
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~------~G~~V~v~e~~~~~GG~l~~--gip~~~~~~~~~~~~l~~~~~~Gv~~~~ 206 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRR------MGHAVTIFEAGPKLGGMMRY--GIPAYRLPREVLDAEIQRILDLGVEVRL 206 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH------CCCeEEEEecCCCCCCeeee--cCCCccCCHHHHHHHHHHHHHCCCEEEe
Confidence 456899999999999999999998 68899999998875432211 0111111112222223445567887776
Q ss_pred eeEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCC-CCCCCCCccccccCCCChHHHHHHHHHHHHHH
Q 010827 157 DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEP-KLDVVPGAAEFAFPFSTLEDACRVDRKLSELE 235 (500)
Q Consensus 157 ~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p-~~~~i~G~~~~~~~~~~~~~~~~~~~~l~~~~ 235 (500)
+.....+. ..++ ....||+||+|||+.. ..+.++|.+.. .+....+.. .......
T Consensus 207 ~~~~~~~~------------------~~~~-~~~~~D~Vi~AtG~~~~~~~~i~g~~~~--gv~~~~~~l---~~~~~~~ 262 (564)
T PRK12771 207 GVRVGEDI------------------TLEQ-LEGEFDAVFVAIGAQLGKRLPIPGEDAA--GVLDAVDFL---RAVGEGE 262 (564)
T ss_pred CCEECCcC------------------CHHH-HHhhCCEEEEeeCCCCCCcCCCCCCccC--CcEEHHHHH---HHhhccC
Confidence 53211110 0000 1235899999999874 45567774321 111111211 1111000
Q ss_pred HhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCCCCcchHHHHHHHHHhCCcEEEcCceEEEEe
Q 010827 236 RRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIR 315 (500)
Q Consensus 236 ~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~ 315 (500)
....+|+|+|||+|.++++.+..+.+.+.. .|+++.+.+.. .++ ..... .+.+.+.||+++++..+.++.
T Consensus 263 ----~~~~gk~v~ViGgg~~a~d~a~~a~~lga~--~v~ii~r~~~~--~~~-~~~~~-~~~a~~~GVki~~~~~~~~i~ 332 (564)
T PRK12771 263 ----PPFLGKRVVVIGGGNTAMDAARTARRLGAE--EVTIVYRRTRE--DMP-AHDEE-IEEALREGVEINWLRTPVEIE 332 (564)
T ss_pred ----CcCCCCCEEEECChHHHHHHHHHHHHcCCC--EEEEEEecCcc--cCC-CCHHH-HHHHHHcCCEEEecCCcEEEE
Confidence 112268999999999999999988777633 28888876532 111 12222 334566899999999999997
Q ss_pred cCccccccccCCCCCcccccccccCCccee---Eeecc-ccc------CCCccEEeecEEEEecCCCCCCCCCCCCCCcc
Q 010827 316 RVGEFEASVKQPESGAIPNIAADKNSDKYI---LELQP-AIK------GLESQIFEADLVLWTVGSKPLLPHVEPPNNRL 385 (500)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---l~~~~-~~~------~~~~~~l~~D~vi~a~G~~p~~~~~~~~~~~~ 385 (500)
.+++.. .++. ++... +.. .++..++++|.||+++|+.|+.+++....
T Consensus 333 ~~~~~~--------------------~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~~~~--- 389 (564)
T PRK12771 333 GDENGA--------------------TGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLESVP--- 389 (564)
T ss_pred cCCCCE--------------------EEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhhhhcc---
Confidence 643211 0111 11100 000 23456899999999999999988876422
Q ss_pred CCCCCCCCCceEeCC-CcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHCCCCC
Q 010827 386 HDLPLNARGQAETDE-TLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPL 454 (500)
Q Consensus 386 ~~~~~~~~g~i~vd~-~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~~ 454 (500)
++. +++|+|.+|+ +++| +.|+||++|||... +.++..|+.+|+.+|.+|.+.|.+.+.
T Consensus 390 -gl~-~~~G~i~vd~~~~~t-s~~~Vfa~GD~~~g--------~~~v~~Av~~G~~aA~~i~~~L~g~~~ 448 (564)
T PRK12771 390 -GVE-VGRGVVQVDPNFMMT-GRPGVFAGGDMVPG--------PRTVTTAIGHGKKAARNIDAFLGGEPY 448 (564)
T ss_pred -Ccc-cCCCCEEeCCCCccC-CCCCEEeccCcCCC--------chHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 455 7789999998 6677 99999999999986 678999999999999999999987643
No 74
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.94 E-value=1.2e-25 Score=251.78 Aligned_cols=303 Identities=16% Similarity=0.086 Sum_probs=198.0
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhh-hccccccCccccccHHHHhccC-CcEEE
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYE-LLSGEVDAWEIAPRFADLLANT-GVQFF 155 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~-~v~~~ 155 (500)
..+||+|||||||||+||..|++ +|++|+|||+++.+..+..... ...+ ....++...+.+.++.. +++++
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar------~G~~V~liD~~~~~GG~~~~~~~~~~g-~~~~~~~~~~~~~l~~~~~v~v~ 234 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAAR------AGARVILVDEQPEAGGSLLSEAETIDG-KPAADWAAATVAELTAMPEVTLL 234 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHh------CCCcEEEEecCCCCCCeeeccccccCC-ccHHHHHHHHHHHHhcCCCcEEE
Confidence 35799999999999999999999 7999999999887654432211 1111 11222223344444444 48888
Q ss_pred Ee-eEEEEecCCCCC-CCCCceeecC-cEE-EcCCccEEEecEEEEeCCCCCCCCCCCCccc-cccCCCChHHHHHHHHH
Q 010827 156 KD-RVKLLCPSDHLG-VNGPMACTHG-GTV-LLESGLIVEYDWLVLSLGAEPKLDVVPGAAE-FAFPFSTLEDACRVDRK 230 (500)
Q Consensus 156 ~~-~v~~i~~~~~~~-~~~~~~~~~~-~~v-~~~~g~~~~~d~lIlAtG~~p~~~~i~G~~~-~~~~~~~~~~~~~~~~~ 230 (500)
.+ +|..+....... .......+.. ... ..+....+.||.||||||+.++.|++||.+. .++ +......+
T Consensus 235 ~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~pipG~~~pgV~---~~~~~~~~--- 308 (985)
T TIGR01372 235 PRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLVFANNDRPGVM---LAGAARTY--- 308 (985)
T ss_pred cCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCCCCCCCCCCcE---EchHHHHH---
Confidence 74 777765422110 0000000000 000 0011126899999999999999999998642 232 22222221
Q ss_pred HHHHHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCCCCcchHHHHHHHHHhCCcEEEcCce
Q 010827 231 LSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYF 310 (500)
Q Consensus 231 l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~ 310 (500)
+.... ...+++|+|||+|++++|+|..|++.+.+. |+++++.+.+ ...+.+.|++.||++++++.
T Consensus 309 l~~~~-----~~~gk~VvViG~G~~g~e~A~~L~~~G~~v--V~vv~~~~~~--------~~~l~~~L~~~GV~i~~~~~ 373 (985)
T TIGR01372 309 LNRYG-----VAPGKRIVVATNNDSAYRAAADLLAAGIAV--VAIIDARADV--------SPEARAEARELGIEVLTGHV 373 (985)
T ss_pred HHhhC-----cCCCCeEEEECCCHHHHHHHHHHHHcCCce--EEEEccCcch--------hHHHHHHHHHcCCEEEcCCe
Confidence 11100 112689999999999999999999887442 7888775433 34567788999999999999
Q ss_pred EEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccEEeecEEEEecCCCCCCCCCCCCCCccCCCCC
Q 010827 311 VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPL 390 (500)
Q Consensus 311 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~ 390 (500)
++++..++.. ..|+++. .++++++++||.|+++.|.+|+++++.++++ .+..
T Consensus 374 v~~i~g~~~v---------------------~~V~l~~----~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~---~~~~ 425 (985)
T TIGR01372 374 VAATEGGKRV---------------------SGVAVAR----NGGAGQRLEADALAVSGGWTPVVHLFSQRGG---KLAW 425 (985)
T ss_pred EEEEecCCcE---------------------EEEEEEe----cCCceEEEECCEEEEcCCcCchhHHHHhcCC---Ceee
Confidence 9999875421 2345542 1235678999999999999999988876652 2222
Q ss_pred CCC--CceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHCC
Q 010827 391 NAR--GQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 451 (500)
Q Consensus 391 ~~~--g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 451 (500)
++. +++. .| +.|+||++|||+.. ..+..|+.+|+.||..|+..+..
T Consensus 426 ~~~~~~~~~-----~t-~v~gVyaaGD~~g~---------~~~~~A~~eG~~Aa~~i~~~lg~ 473 (985)
T TIGR01372 426 DAAIAAFLP-----GD-AVQGCILAGAANGL---------FGLAAALADGAAAGAAAARAAGF 473 (985)
T ss_pred ccccCceec-----CC-CCCCeEEeeccCCc---------cCHHHHHHHHHHHHHHHHHHcCC
Confidence 221 1211 24 78999999999974 57788999999999999988864
No 75
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=99.94 E-value=1.5e-26 Score=220.49 Aligned_cols=322 Identities=21% Similarity=0.331 Sum_probs=244.8
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCccc--Ccchhhhc-ccccc--------------------
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF--KPMLYELL-SGEVD-------------------- 135 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~--~~~~~~~~-~g~~~-------------------- 135 (500)
....+|||+|.+..+++..... .+++.+|.+|..++.++| +|+...++ .+..+
T Consensus 178 hvp~liigggtaAfaa~rai~s----~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffe 253 (659)
T KOG1346|consen 178 HVPYLIIGGGTAAFAAFRAIKS----NDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFE 253 (659)
T ss_pred cCceeEEcCCchhhhccccccc----CCCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEec
Confidence 3568999999998888877766 568999999999988777 23332221 11110
Q ss_pred CccccccHHHH--hccCCcEEEEe-eEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCCCCCCC-CCc
Q 010827 136 AWEIAPRFADL--LANTGVQFFKD-RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVV-PGA 211 (500)
Q Consensus 136 ~~~~~~~~~~~--~~~~~v~~~~~-~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p~~~~i-~G~ 211 (500)
++.+...-.++ ...-||.+.++ .|..|+..++ .|.+.||.++.||.++||||.+|+...+ ...
T Consensus 254 pd~FfvspeDLp~~~nGGvAvl~G~kvvkid~~d~-------------~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A 320 (659)
T KOG1346|consen 254 PDGFFVSPEDLPKAVNGGVAVLRGRKVVKIDEEDK-------------KVILNDGTTIGYDKCLIATGVRPKKLQVFEEA 320 (659)
T ss_pred CCcceeChhHCcccccCceEEEeccceEEeecccC-------------eEEecCCcEeehhheeeecCcCcccchhhhhc
Confidence 11111111111 12337888887 8899988877 5999999999999999999999976542 221
Q ss_pred ----cccccCCCChHHHHHHHHHHHHHHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcC-eEE-EEecCCccCCC
Q 010827 212 ----AEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKG-IVQ-AINVETTICPT 285 (500)
Q Consensus 212 ----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~-~vt-lv~~~~~~~~~ 285 (500)
.+.+..++...|+.++.+.+.. -++|.|||+|..|-|+|+.|.+.....+ .|. ++.-......-
T Consensus 321 ~~evk~kit~fr~p~DF~rlek~~ae----------k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~ki 390 (659)
T KOG1346|consen 321 SEEVKQKITYFRYPADFKRLEKGLAE----------KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKI 390 (659)
T ss_pred CHHhhhheeEEecchHHHHHHHhhhh----------cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhh
Confidence 1334556778888887776544 4699999999999999999999887443 233 33333333334
Q ss_pred CCcchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccEEeecEE
Q 010827 286 GTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLV 365 (500)
Q Consensus 286 ~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~~D~v 365 (500)
+++.++++..+.+++.||.++++..|..+.... +.+.+++. ++.++..|+|
T Consensus 391 LPeyls~wt~ekir~~GV~V~pna~v~sv~~~~-----------------------~nl~lkL~------dG~~l~tD~v 441 (659)
T KOG1346|consen 391 LPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCC-----------------------KNLVLKLS------DGSELRTDLV 441 (659)
T ss_pred hHHHHHHHHHHHHHhcCceeccchhhhhhhhhc-----------------------cceEEEec------CCCeeeeeeE
Confidence 567788888999999999999999999887755 67888875 8999999999
Q ss_pred EEecCCCCCCCCCCCCCCccCCCCCCCC-CceEeCCCcccCCCCCEEEecccccccCCC-CCCCCchHHHHHHHHHHHHH
Q 010827 366 LWTVGSKPLLPHVEPPNNRLHDLPLNAR-GQAETDETLCVKGHPRIFALGDSSALRDSS-GRPLPATAQVAFQQADFAGW 443 (500)
Q Consensus 366 i~a~G~~p~~~~~~~~~~~~~~~~~~~~-g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~-~~~~~~~~~~A~~~g~~aa~ 443 (500)
|+|+|-.||.++.+.++ +++|.+ |.+.||..|+. ..|||++||++.+.|+- |+.......+|+-.|+.++.
T Consensus 442 VvavG~ePN~ela~~sg-----LeiD~~lGGfrvnaeL~a--r~NvwvAGdaacF~D~~LGrRRVehhdhavvSGRLAGE 514 (659)
T KOG1346|consen 442 VVAVGEEPNSELAEASG-----LEIDEKLGGFRVNAELKA--RENVWVAGDAACFEDGVLGRRRVEHHDHAVVSGRLAGE 514 (659)
T ss_pred EEEecCCCchhhccccc-----ceeecccCcEEeeheeec--ccceeeecchhhhhcccccceeccccccceeeceeccc
Confidence 99999999999988765 777765 88999999987 68999999999998863 76677888999999999999
Q ss_pred HHHHHHCCCCCCCceecCce
Q 010827 444 NLWAAINDRPLLPFRFQNLG 463 (500)
Q Consensus 444 ~i~~~l~~~~~~p~~~~~~~ 463 (500)
|+.+....+..+.++|.+.|
T Consensus 515 NMtgAakpy~hqsmFWsdlg 534 (659)
T KOG1346|consen 515 NMTGAAKPYKHQSMFWSDLG 534 (659)
T ss_pred ccccccCCccccceeeeccC
Confidence 99988877777777777654
No 76
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.93 E-value=3.8e-24 Score=220.11 Aligned_cols=302 Identities=25% Similarity=0.302 Sum_probs=230.5
Q ss_pred EEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCccc--CcchhhhccccccCccccccHHHHhccCCcEEEEe-e
Q 010827 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF--KPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD-R 158 (500)
Q Consensus 82 VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~-~ 158 (500)
++|||+|++|+++|..|++.. .+.+++++..++...+ .+....+..+......+..... +..+.+++.... +
T Consensus 1 ivivG~g~aG~~aa~~l~~~~----~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~ 75 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLL----LAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPR-FNRATGIDVRTGTE 75 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcC----CCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccch-hHHhhCCEEeeCCE
Confidence 589999999999999988853 6778888877765444 3444444444434333333333 223557887775 8
Q ss_pred EEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCCCCCCCCCccccccCCCChHHHHHHHHHHHHHHHhc
Q 010827 159 VKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRN 238 (500)
Q Consensus 159 v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p~~~~i~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 238 (500)
+..+++..+ .+.+.++ .+.||+|++|||++|..++ .......+.....++...+......
T Consensus 76 v~~id~~~~-------------~v~~~~g-~~~yd~LvlatGa~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----- 135 (415)
T COG0446 76 VTSIDPENK-------------VVLLDDG-EIEYDYLVLATGARPRPPP-ISDWEGVVTLRLREDAEALKGGAEP----- 135 (415)
T ss_pred EEEecCCCC-------------EEEECCC-cccccEEEEcCCCcccCCC-ccccCceEEECCHHHHHHHHHHHhc-----
Confidence 999999877 5777777 8999999999999998776 2222335556777777776655432
Q ss_pred cCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCCCC-cchHHHHHHHHHhCCcEEEcCceEEEEecC
Q 010827 239 FGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGT-PGNREAALKVLSARKVQLVLGYFVRCIRRV 317 (500)
Q Consensus 239 ~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~~~-~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~ 317 (500)
.++++|+|+|..|+++|..+++++.+ |++++..+.+++.+. +...+.+.+.++++||+++++..+.+|+..
T Consensus 136 -----~~~v~vvG~G~~gle~A~~~~~~G~~---v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~ 207 (415)
T COG0446 136 -----PKDVVVVGAGPIGLEAAEAAAKRGKK---VTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGK 207 (415)
T ss_pred -----cCeEEEECCcHHHHHHHHHHHHcCCe---EEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcc
Confidence 36999999999999999999999977 999999999988887 899999999999999999999999999986
Q ss_pred ccccccccCCCCCcccccccccCCcc-eeEeecccccCCCccEEeecEEEEecCCCCCCCCCCCCCCccCCCCCCCCCce
Q 010827 318 GEFEASVKQPESGAIPNIAADKNSDK-YILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQA 396 (500)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~-v~l~~~~~~~~~~~~~l~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~~~~g~i 396 (500)
.+... .. +.. .++..+++|.+++++|.+||..+...... .....+|++
T Consensus 208 ~~~~~-------------------~~~~~~--------~~~~~~~~d~~~~~~g~~p~~~l~~~~~~----~~~~~~g~i 256 (415)
T COG0446 208 GNTLV-------------------VERVVG--------IDGEEIKADLVIIGPGERPNVVLANDALP----GLALAGGAV 256 (415)
T ss_pred cCcce-------------------eeEEEE--------eCCcEEEeeEEEEeecccccHHHHhhCcc----ceeccCCCE
Confidence 52110 01 122 27789999999999999999666655321 146677899
Q ss_pred EeCCCcccCC-CCCEEEecccccccCCC-C-CCCCchHHHHHHHHHHHHHHHHHH
Q 010827 397 ETDETLCVKG-HPRIFALGDSSALRDSS-G-RPLPATAQVAFQQADFAGWNLWAA 448 (500)
Q Consensus 397 ~vd~~~~t~~-~~~vyaiGD~~~~~~~~-~-~~~~~~~~~A~~~g~~aa~~i~~~ 448 (500)
.||+.+++ + .++||++|||+...... + ......+..|..+++.++.++...
T Consensus 257 ~v~~~~~~-~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~~ 310 (415)
T COG0446 257 LVDERGGT-SKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIAGA 310 (415)
T ss_pred EEcccccc-CCCCCEEeccceEeeecccCCceeeeechhhHhhhhHHHHHHhccc
Confidence 99999998 6 99999999999886543 2 233667888999999999999865
No 77
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.93 E-value=9.6e-25 Score=201.90 Aligned_cols=331 Identities=18% Similarity=0.207 Sum_probs=235.0
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEE
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFK 156 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~ 156 (500)
....+|+|||||.+|+++|..+.+.. ..-+|-|+|..+.++|+|.+...-+|....+.........+ ..+..|++
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl----~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~li-P~~a~wi~ 111 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKL----GSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLI-PKGATWIK 111 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhc----CCCceEEecchhhcccCcceEEeccchhhhhhccCcccccc-cCCcHHHH
Confidence 45689999999999999999998854 45699999999999999999877777666555555544444 45778888
Q ss_pred eeEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCCCCCCCCCcc-----ccccCCCChHHHHHHHHHH
Q 010827 157 DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAA-----EFAFPFSTLEDACRVDRKL 231 (500)
Q Consensus 157 ~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p~~~~i~G~~-----~~~~~~~~~~~~~~~~~~l 231 (500)
..|..++++++ .+.+.+|+++.||++|+|+|.+-..-.|+|+. +.+...++...+...-..+
T Consensus 112 ekv~~f~P~~N-------------~v~t~gg~eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~ 178 (446)
T KOG3851|consen 112 EKVKEFNPDKN-------------TVVTRGGEEISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKEL 178 (446)
T ss_pred HHHHhcCCCcC-------------eEEccCCcEEeeeeEeeeeeceeccchhcChHhhccCCCcccccChHHHHHHHHHH
Confidence 89999999988 68899999999999999999988888888863 3344556666666665666
Q ss_pred HHHHHhccCCCCccEEEEE-CCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCCCCcchHHHHHHHHHhCCcEEEcCce
Q 010827 232 SELERRNFGKDSLIRVAVV-GCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYF 310 (500)
Q Consensus 232 ~~~~~~~~~~~~~k~V~Vv-GgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~ 310 (500)
..+..++.-...+...+=. |+-.-.+-++...-+.-..+..+.++.......-..-....+.+++..++++|++.....
T Consensus 179 ~~fk~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~~iFgVk~Y~~AL~k~~~~rni~vn~krn 258 (446)
T KOG3851|consen 179 MNFKKGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTSLPTIFGVKHYADALEKVIQERNITVNYKRN 258 (446)
T ss_pred HhccCCceEEecCCCccccCCCchhhhhhhHHHHHHhCccccccEEEecCccceecHHHHHHHHHHHHHhcceEeeeccc
Confidence 6655444222222222222 333334444443333222222255554322111111246778888999999999999999
Q ss_pred EEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccEEeecEEEEecCCCCCCCCCCCCCCccCCCCC
Q 010827 311 VRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPL 390 (500)
Q Consensus 311 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~ 390 (500)
+.++..++ ...++++.+ +.+..++++++++-+...+.+. +.+..+. -.
T Consensus 259 LiEV~~~~-----------------------~~AvFe~L~--kPG~t~ei~yslLHv~Ppms~p-e~l~~s~------~a 306 (446)
T KOG3851|consen 259 LIEVRTND-----------------------RKAVFENLD--KPGVTEEIEYSLLHVTPPMSTP-EVLANSD------LA 306 (446)
T ss_pred eEEEeccc-----------------------hhhHHHhcC--CCCceeEEeeeeeeccCCCCCh-hhhhcCc------cc
Confidence 99998865 444555433 3346788999999999988877 5554433 26
Q ss_pred CCCCceEeC-CCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHCCCCCCCceecCcee
Q 010827 391 NARGQAETD-ETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGE 464 (500)
Q Consensus 391 ~~~g~i~vd-~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~~~p~~~~~~~~ 464 (500)
|..|++.|| .++|++.+||||+||||...|+ .+++..+..|...+-+||.+.++++.+. ..|..+.+
T Consensus 307 dktGfvdVD~~TlQs~kypNVFgiGDc~n~Pn------sKTaAAvaaq~~vv~~nl~~~m~g~~pt-~~ydGYtS 374 (446)
T KOG3851|consen 307 DKTGFVDVDQSTLQSKKYPNVFGIGDCMNLPN------SKTAAAVAAQSPVVDKNLTQVMQGKRPT-MKYDGYTS 374 (446)
T ss_pred CcccceecChhhhccccCCCceeeccccCCCc------hhhHHHHHhcCchhhhhHHHHhcCCCcc-eeecCccc
Confidence 778999999 7899999999999999999843 6777777799999999999999987533 34554443
No 78
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.92 E-value=1.2e-24 Score=224.23 Aligned_cols=283 Identities=14% Similarity=0.144 Sum_probs=176.6
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchh-----------------------------
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLY----------------------------- 127 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~----------------------------- 127 (500)
...++|+|||||||||+||++|++ .|++|+++|+++.++......
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~------~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~ 81 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRR------EGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNL 81 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHh------cCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccC
Confidence 346899999999999999999998 799999999988554321110
Q ss_pred --------hhcc-c-----------cccCccccccHHHHhccCCcE--EEE-eeEEEEecCCCCCCCCCceeecCcEEEc
Q 010827 128 --------ELLS-G-----------EVDAWEIAPRFADLLANTGVQ--FFK-DRVKLLCPSDHLGVNGPMACTHGGTVLL 184 (500)
Q Consensus 128 --------~~~~-g-----------~~~~~~~~~~~~~~~~~~~v~--~~~-~~v~~i~~~~~~~~~~~~~~~~~~~v~~ 184 (500)
.+.. . .....++..+++.+.+++++. +.. .+|++++...+ .|.+++
T Consensus 82 p~~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~-----------~w~V~~ 150 (461)
T PLN02172 82 PRECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDG-----------KWRVQS 150 (461)
T ss_pred CHhhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCC-----------eEEEEE
Confidence 0000 0 001123444566666677775 333 58888876543 245554
Q ss_pred CCc----cEEEecEEEEeCC--CCCCCCCCCCccccc---cCCCChHHHHHHHHHHHHHHHhccCCCCccEEEEECCChh
Q 010827 185 ESG----LIVEYDWLVLSLG--AEPKLDVVPGAAEFA---FPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYS 255 (500)
Q Consensus 185 ~~g----~~~~~d~lIlAtG--~~p~~~~i~G~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~V~VvGgG~~ 255 (500)
.++ .+..||+||+||| ..|+.|.+||.+++. .+.+.+.+...+ .+|+|+|||+|.+
T Consensus 151 ~~~~~~~~~~~~d~VIvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~---------------~gk~VvVVG~G~S 215 (461)
T PLN02172 151 KNSGGFSKDEIFDAVVVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPF---------------KNEVVVVIGNFAS 215 (461)
T ss_pred EcCCCceEEEEcCEEEEeccCCCCCcCCCCCCcccCCceEEEecccCCcccc---------------CCCEEEEECCCcC
Confidence 322 2467999999999 679999999986432 122222221111 1689999999999
Q ss_pred HHHHHHHHHHHHhhcCeEEEEecCCccCCCCCcchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCccccc
Q 010827 256 GVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNI 335 (500)
Q Consensus 256 g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~ 335 (500)
|+|+|..|+....+ |++++|...+.. ...+......+..+..|..+..+
T Consensus 216 g~diA~~L~~~a~~---V~l~~r~~~~~~----------~~~~~~~~~~v~~~~~I~~~~~~------------------ 264 (461)
T PLN02172 216 GADISRDIAKVAKE---VHIASRASESDT----------YEKLPVPQNNLWMHSEIDTAHED------------------ 264 (461)
T ss_pred HHHHHHHHHHhCCe---EEEEEeeccccc----------cccCcCCCCceEECCcccceecC------------------
Confidence 99999999988776 999998653211 01111122334444455544331
Q ss_pred ccccCCcceeEeecccccCCCccEEeecEEEEecCCCCCCCCCCCCCCccCCCCCCCCCceEeCCCcccCC-CCCEEEec
Q 010827 336 AADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKG-HPRIFALG 414 (500)
Q Consensus 336 ~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~~~~g~i~vd~~~~t~~-~~~vyaiG 414 (500)
+.|+++ +++.+++|.||+|||++++.+|+...+ .+..+++.....-...-.+. .|+++++|
T Consensus 265 ------g~V~f~--------DG~~~~~D~Ii~~TGy~~~~pfL~~~~----~i~v~~~~v~~Ly~~~f~~~~~p~LafiG 326 (461)
T PLN02172 265 ------GSIVFK--------NGKVVYADTIVHCTGYKYHFPFLETNG----YMRIDENRVEPLYKHVFPPALAPGLSFIG 326 (461)
T ss_pred ------CeEEEC--------CCCCccCCEEEECCcCCccccccCccc----ceeeCCCcchhhHHhhcCCCCCCcEEEEe
Confidence 446665 667789999999999999999987533 12222222111111111123 48999999
Q ss_pred ccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 010827 415 DSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAI 449 (500)
Q Consensus 415 D~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l 449 (500)
=.... .....+-.|++.+|+-+.+.+
T Consensus 327 ~~~~~---------~~f~~~E~Qa~~~a~v~sG~~ 352 (461)
T PLN02172 327 LPAMG---------IQFVMFEIQSKWVAAVLSGRV 352 (461)
T ss_pred ccccc---------cCchhHHHHHHHHHHHHcCCC
Confidence 66432 233456678888887765443
No 79
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.90 E-value=2.5e-22 Score=215.65 Aligned_cols=295 Identities=13% Similarity=0.074 Sum_probs=172.0
Q ss_pred CCCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCc--------------ccCcchhhhc---c-ccccCc
Q 010827 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF--------------VFKPMLYELL---S-GEVDAW 137 (500)
Q Consensus 76 ~~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~--------------~~~~~~~~~~---~-g~~~~~ 137 (500)
....++|+|||||||||+||++|++ +||+||+||+.+.. .+.+++.... . |.....
T Consensus 380 ~~tgKKVaVVGaGPAGLsAA~~La~------~Gh~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yG 453 (1028)
T PRK06567 380 EPTNYNILVTGLGPAGFSLSYYLLR------SGHNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYG 453 (1028)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHh------CCCeEEEEccccccccccccccccchhhhhccchhhhccccCCcccccC
Confidence 3467999999999999999999998 79999999986421 1222222222 2 222222
Q ss_pred cccccHH-------HHhcc-CCcEEEEeeEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCC-CCCCCCC
Q 010827 138 EIAPRFA-------DLLAN-TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA-EPKLDVV 208 (500)
Q Consensus 138 ~~~~~~~-------~~~~~-~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~-~p~~~~i 208 (500)
......+ ..++. .++.++.+..... .++.++.....||+||||||+ .|+.+++
T Consensus 454 Ip~R~~k~~l~~i~~il~~g~~v~~~~gv~lG~------------------dit~edl~~~gyDAV~IATGA~kpr~L~I 515 (1028)
T PRK06567 454 ITVRWDKNNLDILRLILERNNNFKYYDGVALDF------------------NITKEQAFDLGFDHIAFCIGAGQPKVLDI 515 (1028)
T ss_pred ccccchHHHHHHHHHHHhcCCceEEECCeEECc------------------cCCHHHHhhcCCCEEEEeCCCCCCCCCCC
Confidence 2111111 11211 2355554533221 233334345679999999999 6999999
Q ss_pred CCccccccCCCChHHHHHHHHHHHHHHH-hccCCCCccEEEEECCChhHHHHHHHHHHH---------------------
Q 010827 209 PGAAEFAFPFSTLEDACRVDRKLSELER-RNFGKDSLIRVAVVGCGYSGVELAATVSER--------------------- 266 (500)
Q Consensus 209 ~G~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~--------------------- 266 (500)
||.+. ..+.+..++............ .......+++|+|||||++|+|+|.....+
T Consensus 516 PGeda--~GV~sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d 593 (1028)
T PRK06567 516 ENFEA--KGVKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEED 593 (1028)
T ss_pred CCccC--CCeEEHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhccccc
Confidence 99653 334555554433221111000 000011257999999999999999844321
Q ss_pred --------------------------HhhcCeEEEEecCCccCCCCCcchHHHHHHHHHhCCcEEEcCceEEEEecCc-c
Q 010827 267 --------------------------LEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVG-E 319 (500)
Q Consensus 267 --------------------------~~~~~~vtlv~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~-~ 319 (500)
....+.|+++.|...--........+.+.. ..+.||+|++...+.+|..++ +
T Consensus 594 ~eia~~f~~h~r~~g~~~~~~~v~~l~~~~G~VtIvYRr~~~empA~~~~~eEv~~-A~eEGV~f~~~~~P~~i~~d~~g 672 (1028)
T PRK06567 594 KEIAEEFIAHAKLFKEAKNNEELRKVFNKLGGATVYYRGRLQDSPAYKLNHEELIY-ALALGVDFKENMQPLRINVDKYG 672 (1028)
T ss_pred HHHHHHHHHHHHhhcchhccchhhhhhccCCceEEEecCChhhCCCCCCCHHHHHH-HHHcCcEEEecCCcEEEEecCCC
Confidence 001223888877653211111112344444 455699999999999997542 1
Q ss_pred ccccccCCCCCcccccccccCCcceeEeec---------ccc-------------cCCCccEEeecEEEEecCCCCCCCC
Q 010827 320 FEASVKQPESGAIPNIAADKNSDKYILELQ---------PAI-------------KGLESQIFEADLVLWTVGSKPLLPH 377 (500)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~---------~~~-------------~~~~~~~l~~D~vi~a~G~~p~~~~ 377 (500)
.. .++.+.-. ... ..+...+++||.||+|+|..||+.+
T Consensus 673 ~v--------------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~ 732 (1028)
T PRK06567 673 HV--------------------ESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQF 732 (1028)
T ss_pred eE--------------------EEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecccCCcccc
Confidence 11 11222100 000 1124578999999999999999765
Q ss_pred CCCCCCccCCCCCCCCCceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHCCC
Q 010827 378 VEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDR 452 (500)
Q Consensus 378 ~~~~~~~~~~~~~~~~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~ 452 (500)
... ++-..||+-... ..++..|+.+|+.++.+|.+.|...
T Consensus 733 ~~~----------------------------~~s~~~d~~~~f-------~Gtvv~A~as~k~~~~~i~~~l~~~ 772 (1028)
T PRK06567 733 DED----------------------------KYSYFGDCNPKY-------SGSVVKALASSKEGYDAINKKLINN 772 (1028)
T ss_pred ccc----------------------------ccccccCCCCcc-------ccHHHHHHHHHHhHHHHHHHHHhhC
Confidence 311 123455554431 3477789999999999998877654
No 80
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.88 E-value=7.6e-22 Score=200.69 Aligned_cols=322 Identities=18% Similarity=0.092 Sum_probs=205.4
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEE
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFK 156 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~ 156 (500)
...++|+|||||||||+||..|++ .||+||++|+.+.......+- ++......++.....+++++.+++|+.
T Consensus 121 ~tg~~VaviGaGPAGl~~a~~L~~------~G~~Vtv~e~~~~~GGll~yG--IP~~kl~k~i~d~~i~~l~~~Gv~~~~ 192 (457)
T COG0493 121 RTGKKVAVIGAGPAGLAAADDLSR------AGHDVTVFERVALDGGLLLYG--IPDFKLPKDILDRRLELLERSGVEFKL 192 (457)
T ss_pred CCCCEEEEECCCchHhhhHHHHHh------CCCeEEEeCCcCCCceeEEec--CchhhccchHHHHHHHHHHHcCeEEEE
Confidence 344999999999999999999999 799999999988744332211 222233345556666778888999988
Q ss_pred eeEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCC-CCCCCCCCccccccCCCChHHHHHHHHHHHHHH
Q 010827 157 DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAE-PKLDVVPGAAEFAFPFSTLEDACRVDRKLSELE 235 (500)
Q Consensus 157 ~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~-p~~~~i~G~~~~~~~~~~~~~~~~~~~~l~~~~ 235 (500)
+..... .++.++. .-.||+|++|||+. |+..++||.+.. .+....++. ..+....
T Consensus 193 ~~~vG~------------------~it~~~L-~~e~Dav~l~~G~~~~~~l~i~g~d~~--gv~~A~dfL---~~~~~~~ 248 (457)
T COG0493 193 NVRVGR------------------DITLEEL-LKEYDAVFLATGAGKPRPLDIPGEDAK--GVAFALDFL---TRLNKEV 248 (457)
T ss_pred cceECC------------------cCCHHHH-HHhhCEEEEeccccCCCCCCCCCcCCC--cchHHHHHH---HHHHHHH
Confidence 743322 1333322 34569999999965 778889986421 122222322 2222111
Q ss_pred Hh-----ccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCcc--CCCCCcchHHHHHHHHHhCCcEEEcC
Q 010827 236 RR-----NFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTI--CPTGTPGNREAALKVLSARKVQLVLG 308 (500)
Q Consensus 236 ~~-----~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~--~~~~~~~~~~~~~~~l~~~gV~i~~~ 308 (500)
.. ......+|+|+|||+|++++|++....+.+.+. |+.+.+...- ....+........+...+.|+++++.
T Consensus 249 ~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~ 326 (457)
T COG0493 249 LGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKS--VTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPF 326 (457)
T ss_pred hcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeE--EEEeccccccccCCcccccchhhhhhhhhhcCCccccc
Confidence 11 111123499999999999999998888877753 6666432211 11122234555667788889999998
Q ss_pred ceEEEEecCccc-cccccCCCCCcccccccccCCcceeEeecccccCCCccEEeecEEEEecCCCCCCCCCCCCCCccCC
Q 010827 309 YFVRCIRRVGEF-EASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNNRLHD 387 (500)
Q Consensus 309 ~~v~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~p~~~~~~~~~~~~~~ 387 (500)
....++..+..+ ...++..++.-.-...+....+.+-+ .++...+++|.|+.++|+.++....... ..+
T Consensus 327 ~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v-------~gs~~~~~aD~v~~aig~~~~~~~~~~~---~~~ 396 (457)
T COG0493 327 VQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGV-------IGTEKTDAADTVILAIGFEGDATDGLLL---EFG 396 (457)
T ss_pred CCceeEeecCCCcEeeeecccccccCcccccccccCccc-------cCceEEehHHHHHHHhccCCCccccccc---ccc
Confidence 888888764321 10000000000000000000000111 1355678999999999999884443211 114
Q ss_pred CCCCCCCceEeCCCc-ccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHH-HHHCC
Q 010827 388 LPLNARGQAETDETL-CVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLW-AAIND 451 (500)
Q Consensus 388 ~~~~~~g~i~vd~~~-~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~-~~l~~ 451 (500)
+..+..|.+.++..+ +| +.|++|+.||+..+ ...+..|+.+|+.+|+.|. ..+.+
T Consensus 397 ~~~~~~g~i~~~~~~~~t-s~~~vfa~gD~~~g--------~~~vv~ai~eGr~aak~i~~~~l~~ 453 (457)
T COG0493 397 LKLDKRGRIKVDENLQQT-SIPGVFAGGDAVRG--------AALVVWAIAEGREAAKAIDKELLLG 453 (457)
T ss_pred cccCCCCceecccccccc-cCCCeeeCceeccc--------hhhhhhHHhhchHHHHhhhHHHHhh
Confidence 678889999999988 77 99999999999996 5788999999999999998 44443
No 81
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.87 E-value=4.6e-22 Score=207.60 Aligned_cols=317 Identities=18% Similarity=0.202 Sum_probs=151.8
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchh------------hh----------ccc----
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLY------------EL----------LSG---- 132 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~------------~~----------~~g---- 132 (500)
+++|+|||||++||++|+.|.+ .|++++++|+++.+++..... .. +.+
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e------~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p 74 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLE------EGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFP 74 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHH------TT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HC
T ss_pred CCEEEEECccHHHHHHHHHHHH------CCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCC
Confidence 3799999999999999999998 699999999998654332110 00 000
Q ss_pred -----cccCccccccHHHHhccCCcE-EEE--eeEEEEecCCCCCCCCCceeecCcEEEcCC-c--cEEEecEEEEeCCC
Q 010827 133 -----EVDAWEIAPRFADLLANTGVQ-FFK--DRVKLLCPSDHLGVNGPMACTHGGTVLLES-G--LIVEYDWLVLSLGA 201 (500)
Q Consensus 133 -----~~~~~~~~~~~~~~~~~~~v~-~~~--~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~-g--~~~~~d~lIlAtG~ 201 (500)
.....++..+++.+.+++++. ++. .+|.++....... ....|.+++.+ + .+..||+||+|||.
T Consensus 75 ~~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~------~~~~W~V~~~~~g~~~~~~fD~VvvatG~ 148 (531)
T PF00743_consen 75 EDYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFS------ATGKWEVTTENDGKEETEEFDAVVVATGH 148 (531)
T ss_dssp CCCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-------ETEEEEEETTTTEEEEEEECEEEEEE-S
T ss_pred CCCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccC------CCceEEEEeecCCeEEEEEeCeEEEcCCC
Confidence 011122444566666666652 332 4777776533210 01124565543 3 24579999999994
Q ss_pred --CCCCCC--CCCccccccCCCChHHHHHHHHHHHHHHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEe
Q 010827 202 --EPKLDV--VPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAIN 277 (500)
Q Consensus 202 --~p~~~~--i~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~ 277 (500)
.|.+|. +||++.+...+.+..+...-.. + .+|+|+|||+|.+|+|+|.+|++...+ |++..
T Consensus 149 ~~~P~~P~~~~~G~e~F~G~i~HS~~yr~~~~-f-----------~gKrVlVVG~g~Sg~DIa~el~~~a~~---v~~s~ 213 (531)
T PF00743_consen 149 FSKPNIPEPSFPGLEKFKGEIIHSKDYRDPEP-F-----------KGKRVLVVGGGNSGADIAVELSRVAKK---VYLST 213 (531)
T ss_dssp SSCESB-----CTGGGHCSEEEEGGG--TGGG-G-----------TTSEEEEESSSHHHHHHHHHHTTTSCC---EEEEC
T ss_pred cCCCCCChhhhhhhhcCCeeEEccccCcChhh-c-----------CCCEEEEEeCCHhHHHHHHHHHHhcCC---eEEEE
Confidence 588885 8998754332222222211111 1 178999999999999999999886555 87777
Q ss_pred cCCc-cCCCCC-----------------------cchHHHHH-HHH------HhCCcEEEcCceE--EEEecCccccccc
Q 010827 278 VETT-ICPTGT-----------------------PGNREAAL-KVL------SARKVQLVLGYFV--RCIRRVGEFEASV 324 (500)
Q Consensus 278 ~~~~-~~~~~~-----------------------~~~~~~~~-~~l------~~~gV~i~~~~~v--~~i~~~~~~~~~~ 324 (500)
|... +++... ..+...+. +.+ +..|+. +...+ ....-+++....+
T Consensus 214 R~~~wv~pr~~~~G~P~D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~--p~~~~~~~~~~ind~l~~~i 291 (531)
T PF00743_consen 214 RRGAWVLPRYWDNGYPFDMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLK--PKHRFFSQHPTINDELPNRI 291 (531)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred eccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccccccccc
Confidence 6542 222110 00111110 111 111221 11111 1122233445566
Q ss_pred cCCCCCcccccccccCCcceeEeecccccCCCccEE-eecEEEEecCCCCCCCCCCCCCCccCCCCCCCCCceEeCCCcc
Q 010827 325 KQPESGAIPNIAADKNSDKYILELQPAIKGLESQIF-EADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLC 403 (500)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l-~~D~vi~a~G~~p~~~~~~~~~~~~~~~~~~~~g~i~vd~~~~ 403 (500)
..+.|+++|++..... ++++++ +++.+ ++|.||+|||++.+.+|+.+.. +... ++.+.....+-
T Consensus 292 ~~G~i~vk~~I~~~~~-~~v~F~--------DGs~~e~vD~II~~TGY~~~fpFL~~~~-----~~~~-~~~~~LYk~vf 356 (531)
T PF00743_consen 292 RSGRIKVKPDIKRFTE-NSVIFE--------DGSTEEDVDVIIFCTGYKFSFPFLDESL-----IKVD-DNRVRLYKHVF 356 (531)
T ss_dssp -------EE-EEEE-S-SEEEET--------TSEEEEE-SEEEE---EE---TTB-TTT-----T-S--SSSSSEETTTE
T ss_pred cccccccccccccccc-cccccc--------cccccccccccccccccccccccccccc-----cccc-ccccccccccc
Confidence 7788888888876654 667765 66665 6999999999999999998643 2222 22222222221
Q ss_pred cC--CCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 010827 404 VK--GHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 447 (500)
Q Consensus 404 t~--~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 447 (500)
.+ ..|++.++|=+... ......+-.|++.+|+-+.+
T Consensus 357 p~~~~~ptLafIG~~~~~--------g~~fp~~ElQArw~a~v~sG 394 (531)
T PF00743_consen 357 PPNLDHPTLAFIGLVQPF--------GSIFPIFELQARWAARVFSG 394 (531)
T ss_dssp ETETTSTTEEESS-SBSS--------S-HHHHHHHHHHHHHHHHTT
T ss_pred cccccccccccccccccc--------cccccccccccccccccccc
Confidence 11 45889999977542 22444567788877776643
No 82
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.87 E-value=6.2e-22 Score=207.05 Aligned_cols=314 Identities=19% Similarity=0.176 Sum_probs=186.0
Q ss_pred CCCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEE
Q 010827 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFF 155 (500)
Q Consensus 76 ~~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~ 155 (500)
....++|.|||+|||||+||-.|.+ .||.|+++||.++.+...+. ....-..+ ..+..+..+++.+.|++|+
T Consensus 1782 ~rtg~~vaiigsgpaglaaadqlnk------~gh~v~vyer~dr~ggll~y-gipnmkld-k~vv~rrv~ll~~egi~f~ 1853 (2142)
T KOG0399|consen 1782 FRTGKRVAIIGSGPAGLAAADQLNK------AGHTVTVYERSDRVGGLLMY-GIPNMKLD-KFVVQRRVDLLEQEGIRFV 1853 (2142)
T ss_pred cccCcEEEEEccCchhhhHHHHHhh------cCcEEEEEEecCCcCceeee-cCCccchh-HHHHHHHHHHHHhhCceEE
Confidence 3456999999999999999999998 79999999999985442211 00111111 1234445567778899998
Q ss_pred EeeEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCC-CCCCCCCCccccccCCCChHHHHH--HHHHHH
Q 010827 156 KDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAE-PKLDVVPGAAEFAFPFSTLEDACR--VDRKLS 232 (500)
Q Consensus 156 ~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~-p~~~~i~G~~~~~~~~~~~~~~~~--~~~~l~ 232 (500)
++.-.. . .+.+ |+..-.+|++|+|+|+. |+-.++||-+.... +-..++.+ .+..+.
T Consensus 1854 tn~eig--k----------------~vs~-d~l~~~~daiv~a~gst~prdlpv~grd~kgv--~fame~l~~ntk~lld 1912 (2142)
T KOG0399|consen 1854 TNTEIG--K----------------HVSL-DELKKENDAIVLATGSTTPRDLPVPGRDLKGV--HFAMEFLEKNTKSLLD 1912 (2142)
T ss_pred eecccc--c----------------cccH-HHHhhccCeEEEEeCCCCCcCCCCCCcccccc--HHHHHHHHHhHHhhhc
Confidence 863111 1 2222 33456899999999976 88888999652211 11111111 111111
Q ss_pred HHHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccC---------CCCCcc-----hHHHHHHHH
Q 010827 233 ELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTIC---------PTGTPG-----NREAALKVL 298 (500)
Q Consensus 233 ~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~---------~~~~~~-----~~~~~~~~l 298 (500)
.......-...+|+|+|||||++|-++...-.+.++.. |.-++-.+.+. |..+.. -....+.
T Consensus 1913 ~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~s--v~n~ellp~pp~~ra~~npwpqwprvfrvdygh~e~~~-- 1988 (2142)
T KOG0399|consen 1913 SVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKS--VGNFELLPQPPPERAPDNPWPQWPRVFRVDYGHAEAKE-- 1988 (2142)
T ss_pred cccccceeccCCCeEEEECCCCccccccccchhhccce--ecceeecCCCCcccCCCCCCccCceEEEeecchHHHHH--
Confidence 11111122345899999999999999998887777753 33333222221 111111 1111111
Q ss_pred HhCCcEEEcCceE-EEEecCccccccccCCCCCcccccccccCCcceeEeeccc--------ccCCCccEEeecEEEEec
Q 010827 299 SARKVQLVLGYFV-RCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPA--------IKGLESQIFEADLVLWTV 369 (500)
Q Consensus 299 ~~~gV~i~~~~~v-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~--------~~~~~~~~l~~D~vi~a~ 369 (500)
..|-...+-+.+ +++..+++ +.|+.. ..|.++++.. +...+.+.++||+||++.
T Consensus 1989 -~~g~dpr~y~vltk~f~~~~~-------g~v~gl---------~~vrvew~k~~~g~w~~~ei~~see~~eadlv~lam 2051 (2142)
T KOG0399|consen 1989 -HYGSDPRTYSVLTKRFIGDDN-------GNVTGL---------ETVRVEWEKDDKGRWQMKEINNSEEIIEADLVILAM 2051 (2142)
T ss_pred -HhCCCcceeeeeeeeeeccCC-------CceeeE---------EEEEEEEEecCCCceEEEEcCCcceeeecceeeeec
Confidence 122222111111 11111110 001100 1222222111 123366789999999999
Q ss_pred CCCCCCC-CCCCCCCccCCCCCCCCCceEeC-CCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 010827 370 GSKPLLP-HVEPPNNRLHDLPLNARGQAETD-ETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWA 447 (500)
Q Consensus 370 G~~p~~~-~~~~~~~~~~~~~~~~~g~i~vd-~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 447 (500)
|+...-. ..+++ +++.++++.|.+. ..+.+ +.++|||+|||-.. ..++..|+++|+.+|+.+-.
T Consensus 2052 gf~gpe~~~~~~~-----~~~~d~rsni~t~~~~y~t-~v~~vfaagdcrrg--------qslvvwai~egrq~a~~vd~ 2117 (2142)
T KOG0399|consen 2052 GFVGPEKSVIEQL-----NLKTDPRSNILTPKDSYST-DVAKVFAAGDCRRG--------QSLVVWAIQEGRQAARQVDE 2117 (2142)
T ss_pred cccCcchhhhhhc-----CcccCccccccCCCccccc-cccceeecccccCC--------ceEEEEEehhhhHHHHHHHH
Confidence 9985533 33333 5888888888874 56777 89999999999986 56778899999999999988
Q ss_pred HHCCCC
Q 010827 448 AINDRP 453 (500)
Q Consensus 448 ~l~~~~ 453 (500)
.+.++.
T Consensus 2118 ~~~~~t 2123 (2142)
T KOG0399|consen 2118 LMGGTT 2123 (2142)
T ss_pred HhCCcc
Confidence 766654
No 83
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.79 E-value=7.5e-19 Score=174.20 Aligned_cols=245 Identities=20% Similarity=0.181 Sum_probs=133.1
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcch--hh------hccccccCcc------------
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPML--YE------LLSGEVDAWE------------ 138 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~--~~------~~~g~~~~~~------------ 138 (500)
.+|+++||.||++|+.|..|.+. ...++.++|+.+.+.|++.+ .. ++.+..++.+
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~-----~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~ 76 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEH-----GDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLH 76 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHH-----H---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHH
T ss_pred ceeEEEEeeCHHHHHHHHHhhhc-----CCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHH
Confidence 36899999999999999999996 36899999999998888733 11 1111111100
Q ss_pred -------------c---cc---cHHHH-hccCCc-EEEEeeEEEEecCCCCCCCCCceeecCcEEEc----CCccEEEec
Q 010827 139 -------------I---AP---RFADL-LANTGV-QFFKDRVKLLCPSDHLGVNGPMACTHGGTVLL----ESGLIVEYD 193 (500)
Q Consensus 139 -------------~---~~---~~~~~-~~~~~v-~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~----~~g~~~~~d 193 (500)
. .. .|-.+ .++..- -.+..+|+.|++....+. ..++|.+ .++..+.++
T Consensus 77 ~~~rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~-------~~~~V~~~~~~g~~~~~~ar 149 (341)
T PF13434_consen 77 EHGRLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDE-------DLFRVTTRDSDGDGETYRAR 149 (341)
T ss_dssp HTT-HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTE-------EEEEEEEEETTS-EEEEEES
T ss_pred HcCChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCc-------cEEEEEEeecCCCeeEEEeC
Confidence 0 00 11111 222333 223458888877653100 1246666 345689999
Q ss_pred EEEEeCCCCCCCCCCCCc-c--ccccCCCChHHHHHHHHHHHHHHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhc
Q 010827 194 WLVLSLGAEPKLDVVPGA-A--EFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEK 270 (500)
Q Consensus 194 ~lIlAtG~~p~~~~i~G~-~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~ 270 (500)
.||||||..|.+|..... . +.++ +..+........ ...++|+|||||.+|.|++..|.+.+..
T Consensus 150 ~vVla~G~~P~iP~~~~~~~~~~~v~---Hss~~~~~~~~~----------~~~~~V~VVGgGQSAAEi~~~L~~~~~~- 215 (341)
T PF13434_consen 150 NVVLATGGQPRIPEWFQDLPGSPRVF---HSSEYLSRIDQS----------LAGKRVAVVGGGQSAAEIFLDLLRRGPE- 215 (341)
T ss_dssp EEEE----EE---GGGGGGTT-TTEE---EGGGHHHHHT---------------EEEEEE-SSHHHHHHHHHHHHH-TT-
T ss_pred eEEECcCCCCCCCcchhhcCCCCCEE---EehHhhhccccc----------cCCCeEEEECCcHhHHHHHHHHHhCCCC-
Confidence 999999998888764332 1 2233 333332222111 1168999999999999999999998763
Q ss_pred CeEEEEecCCccCCCCC---------c-------------------------------chHHHHHHHH------HhCCcE
Q 010827 271 GIVQAINVETTICPTGT---------P-------------------------------GNREAALKVL------SARKVQ 304 (500)
Q Consensus 271 ~~vtlv~~~~~~~~~~~---------~-------------------------------~~~~~~~~~l------~~~gV~ 304 (500)
..|+++.|...+.+... | ++.+.+.+.+ .+..++
T Consensus 216 ~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~ 295 (341)
T PF13434_consen 216 AKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLR 295 (341)
T ss_dssp EEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SE
T ss_pred cEEEEEECCCccCCCccccchhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeE
Confidence 23999999877654321 1 1111122221 234588
Q ss_pred EEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccEEeecEEEEecCCC
Q 010827 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK 372 (500)
Q Consensus 305 i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~ 372 (500)
++.+++|+.++..++ +++.+.+.+...+ +..++++|.||+|||++
T Consensus 296 l~~~~~v~~~~~~~~----------------------~~~~l~~~~~~~~-~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 296 LLPNTEVTSAEQDGD----------------------GGVRLTLRHRQTG-EEETLEVDAVILATGYR 340 (341)
T ss_dssp EETTEEEEEEEEES-----------------------SSEEEEEEETTT---EEEEEESEEEE---EE
T ss_pred EeCCCEEEEEEECCC----------------------CEEEEEEEECCCC-CeEEEecCEEEEcCCcc
Confidence 999999999988652 4788887654444 66788999999999985
No 84
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.79 E-value=9.5e-20 Score=168.33 Aligned_cols=148 Identities=29% Similarity=0.442 Sum_probs=94.5
Q ss_pred eEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCc--chhhhccccccCc-ccc----ccHHHHhccCCcE
Q 010827 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP--MLYELLSGEVDAW-EIA----PRFADLLANTGVQ 153 (500)
Q Consensus 81 ~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~--~~~~~~~g~~~~~-~~~----~~~~~~~~~~~v~ 153 (500)
||||||||||||+||.+|++ .+++++|+|+.+...+.. ............. ... ..+.+.+...+++
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~------~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 74 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELAR------PGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVE 74 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHH------TTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHE
T ss_pred CEEEEecHHHHHHHHHHHhc------CCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEE
Confidence 69999999999999999997 799999999987544321 1111111100000 000 0333344567888
Q ss_pred EE-EeeEEEEecCCCCCCCCCceeecC---cEEEcCCccEEEecEEEEeCCCCCCCCCCCCccccccCCCChHHHHHHHH
Q 010827 154 FF-KDRVKLLCPSDHLGVNGPMACTHG---GTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDR 229 (500)
Q Consensus 154 ~~-~~~v~~i~~~~~~~~~~~~~~~~~---~~v~~~~g~~~~~d~lIlAtG~~p~~~~i~G~~~~~~~~~~~~~~~~~~~ 229 (500)
++ ..++.+++...+. +.... ......++..+.||+||+|||+.|..|.+||.+ .........++..+..
T Consensus 75 ~~~~~~v~~i~~~~~~------~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~~-~~~~~~~~~~~~~~~~ 147 (201)
T PF07992_consen 75 IRLNAKVVSIDPESKR------VVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGEE-VAYFLRGVDDAQRFLE 147 (201)
T ss_dssp EEHHHTEEEEEESTTE------EEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTTT-TECBTTSEEHHHHHHT
T ss_pred Eeeccccccccccccc------cccCcccceeeccCCceEecCCeeeecCccccceeecCCCc-cccccccccccccccc
Confidence 84 4688999877651 00000 112345667899999999999999999999973 3333455666666555
Q ss_pred HHHHHHHhccCCCCccEEEEEC
Q 010827 230 KLSELERRNFGKDSLIRVAVVG 251 (500)
Q Consensus 230 ~l~~~~~~~~~~~~~k~V~VvG 251 (500)
.+.. +++|+|||
T Consensus 148 ~~~~----------~~~v~VvG 159 (201)
T PF07992_consen 148 LLES----------PKRVAVVG 159 (201)
T ss_dssp HSST----------TSEEEEES
T ss_pred cccc----------cccccccc
Confidence 4321 45999999
No 85
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.78 E-value=4.3e-17 Score=157.37 Aligned_cols=289 Identities=19% Similarity=0.208 Sum_probs=182.3
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcch--hh------hccccccCcccc--------
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPML--YE------LLSGEVDAWEIA-------- 140 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~--~~------~~~g~~~~~~~~-------- 140 (500)
+...|++.||-||+.|+.|..|.+. .++++..+|+.+.+.|+|.. .. ++.+..++.+..
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~-----~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNY 77 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEH-----SGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNY 77 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccc-----cCcceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHH
Confidence 4568999999999999999999885 46899999999999998732 11 111111111111
Q ss_pred --------------------ccH---HHHhccCCcEEEE-eeEEEE---ecCCCCCCCCCceeecCcEEEcCCccEEEec
Q 010827 141 --------------------PRF---ADLLANTGVQFFK-DRVKLL---CPSDHLGVNGPMACTHGGTVLLESGLIVEYD 193 (500)
Q Consensus 141 --------------------~~~---~~~~~~~~v~~~~-~~v~~i---~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d 193 (500)
..| -.|....--...- .+|+.| +.+... ...+.+.++..+.++
T Consensus 78 L~~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~----------~~~~~t~~~~~y~ar 147 (436)
T COG3486 78 LHEHGRLYEFLNYETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVV----------RLFVVTANGTVYRAR 147 (436)
T ss_pred HHHcchHhhhhhhhcccccHHHHHHHHHHHHhhCCccccCCeeccccccCCccee----------EEEEEcCCCcEEEee
Confidence 011 1111111111111 255533 222211 012556666799999
Q ss_pred EEEEeCCCCCCCCCC-CCcc-ccccCCCChHHHHHHHHHHHHHHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcC
Q 010827 194 WLVLSLGAEPKLDVV-PGAA-EFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKG 271 (500)
Q Consensus 194 ~lIlAtG~~p~~~~i-~G~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~ 271 (500)
.|||++|.+|.+|+. .... +.++ ...+...-...+. . .++|+|||||.+|.|+...|........
T Consensus 148 ~lVlg~G~~P~IP~~f~~l~~~~vf---Hss~~~~~~~~~~---~-------~~~V~ViG~GQSAAEi~~~Ll~~~~~~~ 214 (436)
T COG3486 148 NLVLGVGTQPYIPPCFRSLIGERVF---HSSEYLERHPELL---Q-------KRSVTVIGSGQSAAEIFLDLLNSQPPQD 214 (436)
T ss_pred eEEEccCCCcCCChHHhCcCcccee---ehHHHHHhhHHhh---c-------CceEEEEcCCccHHHHHHHHHhCCCCcC
Confidence 999999999998862 2221 2232 2233222222221 1 2359999999999999999876555443
Q ss_pred e-EEEEecCCccCCCC---------CcchHHH------------------------------HHHHHH-------hCCcE
Q 010827 272 I-VQAINVETTICPTG---------TPGNREA------------------------------ALKVLS-------ARKVQ 304 (500)
Q Consensus 272 ~-vtlv~~~~~~~~~~---------~~~~~~~------------------------------~~~~l~-------~~gV~ 304 (500)
. +.+++|+..+.+.- .|+..++ +.+.|. +..|.
T Consensus 215 ~~l~witR~~gf~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~ 294 (436)
T COG3486 215 YQLNWITRSSGFLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVR 294 (436)
T ss_pred ccceeeeccCCCCccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCee
Confidence 2 88999988776542 1222211 122221 34688
Q ss_pred EEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccEEeecEEEEecCCCCCCC-CCCCCCC
Q 010827 305 LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLP-HVEPPNN 383 (500)
Q Consensus 305 i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~p~~~-~~~~~~~ 383 (500)
++.+++|..++..++ +.+.+.+.+...+ +.+++++|.||+|||++...+ |+..+.
T Consensus 295 l~~~~ev~~~~~~G~----------------------g~~~l~~~~~~~~-~~~t~~~D~vIlATGY~~~~P~fL~~l~- 350 (436)
T COG3486 295 LLSLSEVQSVEPAGD----------------------GRYRLTLRHHETG-ELETVETDAVILATGYRRAVPSFLEGLA- 350 (436)
T ss_pred eccccceeeeecCCC----------------------ceEEEEEeeccCC-CceEEEeeEEEEecccccCCchhhhhHH-
Confidence 999999999998773 3377766554444 778899999999999996544 665432
Q ss_pred ccCCCCCCCCCceEeCCCcccCCC----CCEEEecccccc
Q 010827 384 RLHDLPLNARGQAETDETLCVKGH----PRIFALGDSSAL 419 (500)
Q Consensus 384 ~~~~~~~~~~g~i~vd~~~~t~~~----~~vyaiGD~~~~ 419 (500)
..+..+++|...|++.++.... -.||+.|-+...
T Consensus 351 --d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~ht 388 (436)
T COG3486 351 --DRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELHT 388 (436)
T ss_pred --HhhcccccCCeEecCceeeecCCCCcceEEEecccccc
Confidence 2466789999999988876332 269999988764
No 86
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.78 E-value=1.4e-18 Score=157.21 Aligned_cols=290 Identities=20% Similarity=0.242 Sum_probs=171.3
Q ss_pred eEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhh--ccccc-----cCccccccHHHHhccCCcE
Q 010827 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYEL--LSGEV-----DAWEIAPRFADLLANTGVQ 153 (500)
Q Consensus 81 ~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~--~~g~~-----~~~~~~~~~~~~~~~~~v~ 153 (500)
+.+|||||.||.+||..|+.+. +..+|+|+..++..-....+... ..... +-..+.++++.++.
T Consensus 1 kfivvgggiagvscaeqla~~~----psa~illitass~vksvtn~~~i~~ylekfdv~eq~~~elg~~f~~~~~----- 71 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLE----PSAEILLITASSFVKSVTNYQKIGQYLEKFDVKEQNCHELGPDFRRFLN----- 71 (334)
T ss_pred CeEEEcCccccccHHHHHHhhC----CCCcEEEEeccHHHHHHhhHHHHHHHHHhcCccccchhhhcccHHHHHH-----
Confidence 4689999999999999999974 67799999988642211111000 00000 11112223333322
Q ss_pred EEEeeEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCCCCCCCCCccccccCCCChHHHHHHHHHHHH
Q 010827 154 FFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSE 233 (500)
Q Consensus 154 ~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p~~~~i~G~~~~~~~~~~~~~~~~~~~~l~~ 233 (500)
+ |..++..+. .+.+.+|..+.|++|++|||.+|... .+|.+..+...++.+.+..++..+..
T Consensus 72 ---~-v~~~~s~eh-------------ci~t~~g~~~ky~kKOG~tg~kPklq-~E~~n~~Iv~irDtDsaQllq~kl~k 133 (334)
T KOG2755|consen 72 ---D-VVTWDSSEH-------------CIHTQNGEKLKYFKLCLCTGYKPKLQ-VEGINPKIVGIRDTDSAQLLQCKLVK 133 (334)
T ss_pred ---h-hhhhccccc-------------eEEecCCceeeEEEEEEecCCCccee-ecCCCceEEEEecCcHHHHHHHHHhh
Confidence 1 333333332 68888999999999999999999643 34445556667788888888887765
Q ss_pred HHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCCC-CcchHHHHHHHHHhC-----------
Q 010827 234 LERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTG-TPGNREAALKVLSAR----------- 301 (500)
Q Consensus 234 ~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~~-~~~~~~~~~~~l~~~----------- 301 (500)
.|.|+|+|.|-+++|++.++.. .. |++....+.+...| +|...+.+...|...
T Consensus 134 ----------aK~VlilgnGgia~El~yElk~--~n---v~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~ 198 (334)
T KOG2755|consen 134 ----------AKIVLILGNGGIAMELTYELKI--LN---VTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHF 198 (334)
T ss_pred ----------cceEEEEecCchhHHHHHHhhc--ce---eEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhh
Confidence 6899999999999999999853 22 88888877776664 555555544444110
Q ss_pred -CcEEEcCceEEEEecC--ccccccccC-CCCCccccccc---------ccCCcceeEeecccccCCCccEEeecEEEEe
Q 010827 302 -KVQLVLGYFVRCIRRV--GEFEASVKQ-PESGAIPNIAA---------DKNSDKYILELQPAIKGLESQIFEADLVLWT 368 (500)
Q Consensus 302 -gV~i~~~~~v~~i~~~--~~~~~~~~~-~~~~~~~~~~~---------~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a 368 (500)
.++.++++.-..+... .+.-..++. +.....-+... ....+...+...+...+ ....+.||.++++
T Consensus 199 q~iea~pk~~~n~vg~algpDw~s~~dl~g~~eseer~l~~l~~~~~~~~d~~d~~sv~~~~~ek~-~~~qlt~d~ivSa 277 (334)
T KOG2755|consen 199 QYIEAFPKCEENNVGPALGPDWHSQIDLQGISESENRSLTYLRNCVITSTDTSDNLSVHYMDKEKM-ADNQLTCDFIVSA 277 (334)
T ss_pred hhhhhcCcccccCcccccCcchhhhcccccchhhhhhhhHHhhhheeeeccchhhccccccccccc-ccceeeeeEEEec
Confidence 1111111110000000 000000000 00000000000 00000001111111222 2345779999999
Q ss_pred cCCCCCCCCCCCCCCccCCCCCCCCCceEeCCCcccCCCCCEEEecccccc
Q 010827 369 VGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL 419 (500)
Q Consensus 369 ~G~~p~~~~~~~~~~~~~~~~~~~~g~i~vd~~~~t~~~~~vyaiGD~~~~ 419 (500)
+|..||.++.-.. .+++.++|.+.||..++| +.|++|++||.+..
T Consensus 278 tgvtpn~e~~~~~-----~lq~~edggikvdd~m~t-slpdvFa~gDvctt 322 (334)
T KOG2755|consen 278 TGVTPNSEWAMNK-----MLQITEDGGIKVDDAMET-SLPDVFAAGDVCTT 322 (334)
T ss_pred cccCcCceEEecC-----hhhhccccCeeehhhccc-cccceeeecceecc
Confidence 9999998865432 377888999999999999 99999999999884
No 87
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.74 E-value=8.1e-17 Score=162.92 Aligned_cols=105 Identities=15% Similarity=0.216 Sum_probs=66.5
Q ss_pred CCCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEE
Q 010827 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFF 155 (500)
Q Consensus 76 ~~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~ 155 (500)
...+++|+|||||||||+||.+|.+. .|++|+|||+.+..+.... ....+.+.....+...+...+...++++.
T Consensus 36 ~~~~krVAIVGaGPAGlyaA~~Ll~~-----~g~~VtlfEk~p~pgGLvR-~GVaPdh~~~k~v~~~f~~~~~~~~v~f~ 109 (506)
T PTZ00188 36 EAKPFKVGIIGAGPSALYCCKHLLKH-----ERVKVDIFEKLPNPYGLIR-YGVAPDHIHVKNTYKTFDPVFLSPNYRFF 109 (506)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHh-----cCCeEEEEecCCCCccEEE-EeCCCCCccHHHHHHHHHHHHhhCCeEEE
Confidence 34568999999999999999987652 6999999999987543222 12222332223344445454545567776
Q ss_pred EeeEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCCCC
Q 010827 156 KDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKL 205 (500)
Q Consensus 156 ~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p~~ 205 (500)
.+. .+ .. .++.++. ...||+||+|+|+.+.-
T Consensus 110 gnv--~V--G~--------------Dvt~eeL-~~~YDAVIlAtGA~~l~ 140 (506)
T PTZ00188 110 GNV--HV--GV--------------DLKMEEL-RNHYNCVIFCCGASEVS 140 (506)
T ss_pred eee--Ee--cC--------------ccCHHHH-HhcCCEEEEEcCCCCCC
Confidence 321 11 10 2333333 34899999999998643
No 88
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.73 E-value=2.5e-17 Score=166.85 Aligned_cols=231 Identities=18% Similarity=0.205 Sum_probs=139.3
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchh--------h------------------hc
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLY--------E------------------LL 130 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~--------~------------------~~ 130 (500)
+..++|+|||||||||++|+.|.+ .|++++++||.+++++..... . +.
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~------~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfp 77 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLR------EGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFP 77 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHH------CCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCC
Confidence 346899999999999999999999 799999999998654322111 0 00
Q ss_pred c-----cc-ccCccccccHHHHhccCCc--EEEE-eeEEEEecCCCCCCCCCceeecCcEEEcCCc----cEEEecEEEE
Q 010827 131 S-----GE-VDAWEIAPRFADLLANTGV--QFFK-DRVKLLCPSDHLGVNGPMACTHGGTVLLESG----LIVEYDWLVL 197 (500)
Q Consensus 131 ~-----g~-~~~~~~~~~~~~~~~~~~v--~~~~-~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g----~~~~~d~lIl 197 (500)
. .. .+..++..+++.+.+++++ .+.. .++..++...+ ..|.|...+. ...-||.|++
T Consensus 78 f~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~----------gkW~V~~~~~~~~~~~~ifd~VvV 147 (448)
T KOG1399|consen 78 FPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDK----------GKWRVTTKDNGTQIEEEIFDAVVV 147 (448)
T ss_pred CcccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccC----------CceeEEEecCCcceeEEEeeEEEE
Confidence 0 00 1112344556666666664 2222 36666766542 0145555433 4788999999
Q ss_pred eCCCC--CCCCCCCCc--cccccCCCChHHHHHHHHHHHHHHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeE
Q 010827 198 SLGAE--PKLDVVPGA--AEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIV 273 (500)
Q Consensus 198 AtG~~--p~~~~i~G~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~v 273 (500)
|||-. |++|.++|. +.+...+.+..+.... +. -.+|+|+|||+|++|+|++..++....+ |
T Consensus 148 ctGh~~~P~~P~~~g~~~~~f~G~~iHS~~Yk~~-e~-----------f~~k~VlVIG~g~SG~DIs~d~~~~ak~---v 212 (448)
T KOG1399|consen 148 CTGHYVEPRIPQIPGPGIESFKGKIIHSHDYKSP-EK-----------FRDKVVLVVGCGNSGMDISLDLLRVAKE---V 212 (448)
T ss_pred cccCcCCCCCCcCCCCchhhcCCcceehhhccCc-cc-----------ccCceEEEECCCccHHHHHHHHHHhccC---c
Confidence 99965 888888883 3332222222221110 10 1168999999999999999999887776 6
Q ss_pred EEEecCCccCCCCCcchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeeccccc
Q 010827 274 QAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIK 353 (500)
Q Consensus 274 tlv~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~ 353 (500)
.+..+ . + .........+ ..++..+.. ++.+.. .+..+.
T Consensus 213 ~~~~~-~---~----~~~~~~~~~~-~~~~~~~~~--i~~~~e-------------------------~~~~~~------ 250 (448)
T KOG1399|consen 213 HLSVV-S---P----KVHVEPPEIL-GENLWQVPS--IKSFTE-------------------------DGSVFE------ 250 (448)
T ss_pred ceeee-c---c----ccccccccee-ecceEEccc--cccccC-------------------------cceEEE------
Confidence 65543 1 0 0000000000 112333322 444444 343443
Q ss_pred CCCccEEeecEEEEecCCCCCCCCCCCC
Q 010827 354 GLESQIFEADLVLWTVGSKPLLPHVEPP 381 (500)
Q Consensus 354 ~~~~~~l~~D~vi~a~G~~p~~~~~~~~ 381 (500)
.++....+|.||+|||+.-..++++..
T Consensus 251 -~~~~~~~~D~ii~ctgy~y~fPfl~~~ 277 (448)
T KOG1399|consen 251 -KGGPVERVDRIIFCTGYKYKFPFLETL 277 (448)
T ss_pred -cCceeEEeeeEEEeeeeEeecceeccC
Confidence 266777899999999999888887654
No 89
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.73 E-value=2.1e-18 Score=159.65 Aligned_cols=164 Identities=22% Similarity=0.273 Sum_probs=99.5
Q ss_pred EEECCcHHHHHHHHHhhhcccCCCCCCe-EEEEcCCCCcccCc------------chhh--h------------------
Q 010827 83 CILGGGFGGLYTALRLESLVWQDDKKPQ-VLLVDQSERFVFKP------------MLYE--L------------------ 129 (500)
Q Consensus 83 vIIGgG~AGl~aA~~L~~~~~~~~~g~~-V~lie~~~~~~~~~------------~~~~--~------------------ 129 (500)
+||||||+||++|.+|.+ .|.+ ++|||+++.++... .... .
T Consensus 1 ~IIGaG~aGl~~a~~l~~------~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLE------RGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRW 74 (203)
T ss_dssp EEE--SHHHHHHHHHHHH------TT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHH
T ss_pred CEECcCHHHHHHHHHHHh------CCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCC
Confidence 799999999999999999 6788 99999986432110 0000 0
Q ss_pred ccccccCccccccHHHHhccCCcEEEEe-eEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCC--CCCCC
Q 010827 130 LSGEVDAWEIAPRFADLLANTGVQFFKD-RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA--EPKLD 206 (500)
Q Consensus 130 ~~g~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~--~p~~~ 206 (500)
........++..+++.+.+++++++..+ +|+++..... .|.+++.++..+.+|+||+|||. .|+.|
T Consensus 75 ~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~-----------~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p 143 (203)
T PF13738_consen 75 PHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGD-----------GWTVTTRDGRTIRADRVVLATGHYSHPRIP 143 (203)
T ss_dssp SBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETT-----------TEEEEETTS-EEEEEEEEE---SSCSB---
T ss_pred CcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEecc-----------EEEEEEEecceeeeeeEEEeeeccCCCCcc
Confidence 0011122233445667777778876654 7888877654 36889988888999999999995 78889
Q ss_pred CCCC-ccccccCCCChHHHHHHHHHHHHHHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCc
Q 010827 207 VVPG-AAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETT 281 (500)
Q Consensus 207 ~i~G-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~ 281 (500)
.+|| ......+.....+...+ .+|+|+|||+|.+|+|+|..|++.+.+ |+++.|.+.
T Consensus 144 ~~~g~~~~~~~h~~~~~~~~~~---------------~~k~V~VVG~G~SA~d~a~~l~~~g~~---V~~~~R~~~ 201 (203)
T PF13738_consen 144 DIPGSAFRPIIHSADWRDPEDF---------------KGKRVVVVGGGNSAVDIAYALAKAGKS---VTLVTRSPI 201 (203)
T ss_dssp S-TTGGCSEEEEGGG-STTGGC---------------TTSEEEEE--SHHHHHHHHHHTTTCSE---EEEEESS--
T ss_pred ccccccccceEehhhcCChhhc---------------CCCcEEEEcChHHHHHHHHHHHhhCCE---EEEEecCCC
Confidence 9999 33322222111111111 168999999999999999999998855 999999764
No 90
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.73 E-value=9.9e-17 Score=152.62 Aligned_cols=312 Identities=18% Similarity=0.186 Sum_probs=174.2
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEEe
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD 157 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (500)
..++|.|||+||||+.+|.+|.+ .+.+++|+|+|+.+. ++-...+.+++.+.....+...+...+++....|.-+
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk----~~~~~~Vdi~Ek~Pv-PFGLvRyGVAPDHpEvKnvintFt~~aE~~rfsf~gN 93 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLK----RHPNAHVDIFEKLPV-PFGLVRYGVAPDHPEVKNVINTFTKTAEHERFSFFGN 93 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHh----cCCCCeeEeeecCCc-ccceeeeccCCCCcchhhHHHHHHHHhhccceEEEec
Confidence 34699999999999999999988 347899999999975 2222233445555555555666777777766666654
Q ss_pred -eEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCC-CCCCCCCCccccccCCCChHHHHHHHHHHHHHH
Q 010827 158 -RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAE-PKLDVVPGAAEFAFPFSTLEDACRVDRKLSELE 235 (500)
Q Consensus 158 -~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~-p~~~~i~G~~~~~~~~~~~~~~~~~~~~l~~~~ 235 (500)
.+ . ..+.+.+ .+-.||+||||+|+. ++.++|||.+ ...+++...+...-+-+....
T Consensus 94 v~v-----G--------------~dvsl~e-L~~~ydavvLaYGa~~dR~L~IPGe~--l~~V~Sarefv~Wyng~P~~~ 151 (468)
T KOG1800|consen 94 VKV-----G--------------RDVSLKE-LTDNYDAVVLAYGADGDRRLDIPGEE--LSGVISAREFVGWYNGLPENQ 151 (468)
T ss_pred cee-----c--------------ccccHHH-HhhcccEEEEEecCCCCcccCCCCcc--cccceehhhhhhhccCCCccc
Confidence 21 0 0123322 256899999999986 6889999965 122233333222211111100
Q ss_pred HhccCCCCccEEEEECCChhHHHHHHHHHHHHhh-------------------cCeEEEEecCCccCCCCC---------
Q 010827 236 RRNFGKDSLIRVAVVGCGYSGVELAATVSERLEE-------------------KGIVQAINVETTICPTGT--------- 287 (500)
Q Consensus 236 ~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~-------------------~~~vtlv~~~~~~~~~~~--------- 287 (500)
....+- .+.+|+|||.|++++++|..|...-.. -..|+++.|...+...|.
T Consensus 152 ~le~dl-s~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRgp~~~aFTiKELRE~~~ 230 (468)
T KOG1800|consen 152 NLEPDL-SGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGPLQVAFTIKELREVLE 230 (468)
T ss_pred ccCccc-ccceEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCCcceEEEEeccCccceeeeHHHHHHHhC
Confidence 000111 167999999999999999887442111 112778877554322221
Q ss_pred -----------------------------cchHHHHHHHHHhCC---------cE---EEcCceEEEEecCccccccccC
Q 010827 288 -----------------------------PGNREAALKVLSARK---------VQ---LVLGYFVRCIRRVGEFEASVKQ 326 (500)
Q Consensus 288 -----------------------------~~~~~~~~~~l~~~g---------V~---i~~~~~v~~i~~~~~~~~~~~~ 326 (500)
.++.+.+.+.+.++- .+ +.....+.+|..+.+.
T Consensus 231 l~~~~~r~~~~~~~~~~~~~~~~~~~RpRkrl~ell~k~~~e~~~~~~~~~~~~k~w~~~f~r~P~~i~~~~~~------ 304 (468)
T KOG1800|consen 231 LPGARPRLDPVDFSGKWMDESETPQHRPRKRLTELLLKWAREHRAKASEEAGGSKQWHLRFFRTPGAILPGADG------ 304 (468)
T ss_pred CCCcccccCchhccceeCCcccccccCchhHHHHHHHHHHHhhhhccccccCccchhHHHHhcCHHHhccCccc------
Confidence 111122222222210 00 0001111222222110
Q ss_pred CCCCcccccccccCCcceeEeecc-----cccCCCccEEeecEEEEecCCCCCCCCCCCCCC-ccCCCCCCCCCceEeCC
Q 010827 327 PESGAIPNIAADKNSDKYILELQP-----AIKGLESQIFEADLVLWTVGSKPLLPHVEPPNN-RLHDLPLNARGQAETDE 400 (500)
Q Consensus 327 ~~~~~~~~~~~~~~~~~v~l~~~~-----~~~~~~~~~l~~D~vi~a~G~~p~~~~~~~~~~-~~~~~~~~~~g~i~vd~ 400 (500)
..++.+..+. ....++.++++|++++.++|++.. +.-...+. +..++..+.+|++.+..
T Consensus 305 --------------v~~~~~~~t~l~~~~~~~tg~~e~~p~~l~i~sIGYks~-pv~~gipFd~~kgvv~n~~GrV~~s~ 369 (468)
T KOG1800|consen 305 --------------VSGVRFQVTILEGTQAVPTGAFETLPCGLLIRSIGYKSV-PVDSGIPFDDKKGVVPNVNGRVLVSG 369 (468)
T ss_pred --------------ccceEEEeeeehhhcccccCceEeeccceeEeeeeeccc-ccCCCCCcccccCcccCCCceEEeec
Confidence 0122222111 223457789999999999999854 21111000 01233344455555221
Q ss_pred CcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHC
Q 010827 401 TLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIN 450 (500)
Q Consensus 401 ~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 450 (500)
..|++|++|-|...+ ...+..++.++..+|..|.+++.
T Consensus 370 -----~~pglY~sGW~k~GP-------~GvIattm~dAf~v~d~I~qD~~ 407 (468)
T KOG1800|consen 370 -----CSPGLYASGWVKHGP-------TGVIATTMQDAFEVADTIVQDLK 407 (468)
T ss_pred -----cCCceEEEeeeccCC-------cceeeehhhhHHHHHHHHHHHHH
Confidence 359999999999863 34566778888888888888776
No 91
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.72 E-value=9.7e-16 Score=150.01 Aligned_cols=327 Identities=17% Similarity=0.227 Sum_probs=192.2
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcch-hhhcc-ccccCccccccHHHHhccCCcEE
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPML-YELLS-GEVDAWEIAPRFADLLANTGVQF 154 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~-~~~~~-g~~~~~~~~~~~~~~~~~~~v~~ 154 (500)
...++++|||||+||++||+.|+. .|++|+|+||++.++.+..- ...++ ...+.-.+.+.+.+...+.++++
T Consensus 122 ~v~~svLVIGGGvAGitAAl~La~------~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l 195 (622)
T COG1148 122 EVSKSVLVIGGGVAGITAALELAD------MGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIEL 195 (622)
T ss_pred hhccceEEEcCcHHHHHHHHHHHH------cCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceee
Confidence 445899999999999999999999 68999999999987765322 11111 11122223344445555556777
Q ss_pred EEe-eEEEEecCC-----------CC--CCC----------CC--------------ceee-------------------
Q 010827 155 FKD-RVKLLCPSD-----------HL--GVN----------GP--------------MACT------------------- 177 (500)
Q Consensus 155 ~~~-~v~~i~~~~-----------~~--~~~----------~~--------------~~~~------------------- 177 (500)
++. +|..++-.. +. +.+ .. .+..
T Consensus 196 ~TyaeV~ev~G~vGnF~vki~kkpryVdd~CtgCg~C~~vCPve~~nefn~Gl~~~kAiy~p~~qaVp~~~~Id~~~c~~ 275 (622)
T COG1148 196 ITYAEVEEVSGSVGNFTVKIEKKPRYVDDKCTGCGACSEVCPVEVPNEFNEGLGKRKAIYIPFPQAVPLNYNIDPKHCIE 275 (622)
T ss_pred eeeeeeeeecccccceEEEEecccccccccccccccccccCCcccCcccccccccceeeeccchhhcccccccChhhhcc
Confidence 663 665543210 00 000 00 0000
Q ss_pred --------cCcEEEcCCc---cEEEecEEEEeCCCCCCCCCCCCcccccc-CCCChHHHHHHHHHHHHHHH--h----cc
Q 010827 178 --------HGGTVLLESG---LIVEYDWLVLSLGAEPKLDVVPGAAEFAF-PFSTLEDACRVDRKLSELER--R----NF 239 (500)
Q Consensus 178 --------~~~~v~~~~g---~~~~~d~lIlAtG~~p~~~~i~G~~~~~~-~~~~~~~~~~~~~~l~~~~~--~----~~ 239 (500)
..+.+..+.. .++....+|+|||-.++-+.-.. +..+ .+.+.-...++.+.+..-.. + ..
T Consensus 276 c~~C~~ac~~~av~~~q~~e~ve~~vGaIIvAtGy~~~Da~~k~--EyGYG~~~nVIT~lElErml~~~GPT~GkvlrpS 353 (622)
T COG1148 276 CGLCEKACPNEAVDLNQEPEEVELEVGAIIVATGYKPFDATRKE--EYGYGKYPNVITNLELERMLNPNGPTGGKVLRPS 353 (622)
T ss_pred chhhhhcCCccccccCCCCcEEEEEeceEEEEccccccCcchhh--hcCCCCCcchhhHHHHHHHhccCCCCCceEEecC
Confidence 0111222221 16788999999998776443221 1111 12222233344443321100 0 01
Q ss_pred CCCCccEEEEE---CCCh--------------hHHHHHHHHHHHHhhcCeEEEEecCCccCCCCCcchHHHHHHHHHhCC
Q 010827 240 GKDSLIRVAVV---GCGY--------------SGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARK 302 (500)
Q Consensus 240 ~~~~~k~V~Vv---GgG~--------------~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~~~~~~~~~~~~~l~~~g 302 (500)
+.+.+|+|+.| |+-+ .++-.|..+.++.++.. |+++...-+.. +....+...+.-++.|
T Consensus 354 dg~~pKrVaFIqCVGSRD~~~~n~YCSrvCCm~slKqA~~Ike~~Pd~~-v~I~YmDiRaf---G~~yEefY~~~Q~~~g 429 (622)
T COG1148 354 DGKPPKRVAFIQCVGSRDFQVGNPYCSRVCCMVSLKQAQLIKERYPDTD-VTIYYMDIRAF---GKDYEEFYVRSQEDYG 429 (622)
T ss_pred CCCCCceEEEEEEecCcCcccCChhhHHHHHHHHHhhhhhhhhcCCCcc-eeEEEEEeecc---CccHHHHHHhhhhhhc
Confidence 34668999987 5332 12223334444443322 77777654422 2223333333333789
Q ss_pred cEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccEEeecEEEEecCCCCCCCCCCCCC
Q 010827 303 VQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPN 382 (500)
Q Consensus 303 V~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~p~~~~~~~~~ 382 (500)
|+++.+ ++.+|....+ +.+++..++...+ .-.++++|+||+++|+.|.... ++..
T Consensus 430 V~fIRG-rvaei~e~p~----------------------~~l~V~~EdTl~g-~~~e~~~DLVVLa~Gmep~~g~-~kia 484 (622)
T COG1148 430 VRFIRG-RVAEIAEFPK----------------------KKLIVRVEDTLTG-EVKEIEADLVVLATGMEPSEGA-KKIA 484 (622)
T ss_pred hhhhcC-ChHHheeCCC----------------------CeeEEEEEeccCc-cceecccceEEEeeccccCcch-HHHH
Confidence 999987 6667665442 4456665544444 6678899999999999986322 2221
Q ss_pred CccCCCCCCCCCceEeC-CCcc---cCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHCC
Q 010827 383 NRLHDLPLNARGQAETD-ETLC---VKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 451 (500)
Q Consensus 383 ~~~~~~~~~~~g~i~vd-~~~~---t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 451 (500)
..+++..+++|++... +.++ + +.++||.+|-|.+ |+.+..++.||..||....+.+..
T Consensus 485 -~iLgL~~~~~gF~k~~hPkl~pv~s-~~~GIflAG~aqg---------PkdI~~siaqa~aAA~kA~~~l~~ 546 (622)
T COG1148 485 -KILGLSQDEDGFLKEAHPKLRPVDS-NRDGIFLAGAAQG---------PKDIADSIAQAKAAAAKAAQLLGR 546 (622)
T ss_pred -HhcCcccCCCCccccCCCCcccccc-cCCcEEEeecccC---------CccHHHHHHHhHHHHHHHHHHhhc
Confidence 1567899999999876 5554 4 6789999998887 799999999999999998887764
No 92
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.72 E-value=2.5e-17 Score=169.24 Aligned_cols=177 Identities=21% Similarity=0.204 Sum_probs=116.1
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCe-EEEEcCCCCcccCcch-------------hhhccc-------ccc
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQ-VLLVDQSERFVFKPML-------------YELLSG-------EVD 135 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~-V~lie~~~~~~~~~~~-------------~~~~~g-------~~~ 135 (500)
....+|+|||||++||++|++|.+ .|.. ++|+||++..+..... ..-+++ ...
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~------~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~ 79 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQ------AGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFA 79 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHH------cCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCC
Confidence 456899999999999999999999 5666 9999999743321100 000000 111
Q ss_pred -CccccccHHHHhccCCcEEEE---eeEEEEecCCCCCCCCCceeecCcEEEcCCccE--EEecEEEEeCC--CCCCCCC
Q 010827 136 -AWEIAPRFADLLANTGVQFFK---DRVKLLCPSDHLGVNGPMACTHGGTVLLESGLI--VEYDWLVLSLG--AEPKLDV 207 (500)
Q Consensus 136 -~~~~~~~~~~~~~~~~v~~~~---~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~--~~~d~lIlAtG--~~p~~~~ 207 (500)
...+...+...++++++.... ..|..++.+.+. ..|+|+++++.. +.+|+||+||| ..|.+|.
T Consensus 80 ~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~---------~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~ 150 (443)
T COG2072 80 PFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDT---------KRWTVTTSDGGTGELTADFVVVATGHLSEPYIPD 150 (443)
T ss_pred CcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCC---------CeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCC
Confidence 111334455666666654332 233334333321 136788887765 45999999999 5699999
Q ss_pred CCCccccccCCCChHHHHHHHHHHHHHHHhccCCCCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccC
Q 010827 208 VPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTIC 283 (500)
Q Consensus 208 i~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~ 283 (500)
++|.+++...+.+..+....... .+|+|+|||+|.+|++++..|++.+++ ||++.|.+...
T Consensus 151 ~~G~~~f~g~~~HS~~~~~~~~~------------~GKrV~VIG~GaSA~di~~~l~~~ga~---vt~~qRs~~~~ 211 (443)
T COG2072 151 FAGLDEFKGRILHSADWPNPEDL------------RGKRVLVIGAGASAVDIAPELAEVGAS---VTLSQRSPPHI 211 (443)
T ss_pred CCCccCCCceEEchhcCCCcccc------------CCCeEEEECCCccHHHHHHHHHhcCCe---eEEEecCCCce
Confidence 99987654333333322222111 179999999999999999999999866 99999977543
No 93
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.53 E-value=4e-13 Score=136.45 Aligned_cols=169 Identities=16% Similarity=0.025 Sum_probs=111.7
Q ss_pred EEECCChhHHHHH-HHHHH----HHhhcCeEEEEecCCccCCCCCcchHHHHHHHHHhCCcEEEcCceEEEEecCccccc
Q 010827 248 AVVGCGYSGVELA-ATVSE----RLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEA 322 (500)
Q Consensus 248 ~VvGgG~~g~e~A-~~l~~----~~~~~~~vtlv~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~ 322 (500)
+|++.+..|+|.+ ..+++ .+.+ |+++...+..++.. ++.+.+.+.+++.|+++++++.|.+++.++
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~~LG~~---V~~vp~~ppslpG~--rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~---- 289 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEEALGCP---VFELPTLPPSVPGL--RLQNALRRAFERLGGRIMPGDEVLGAEFEG---- 289 (422)
T ss_pred EEEECceecCCChHHHHHHHHHHHCCC---EEEeCCCCCCCchH--HHHHHHHHHHHhCCCEEEeCCEEEEEEEeC----
Confidence 6788899999998 55543 3443 99998877777654 678888999999999999999999998654
Q ss_pred cccCCCCCcccccccccCCcceeEeecccccCCCccEEeecEEEEecCCCCCCCCCCCCCC---ccCCCCC--C------
Q 010827 323 SVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPPNN---RLHDLPL--N------ 391 (500)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~p~~~~~~~~~~---~~~~~~~--~------ 391 (500)
+++..... ..+....+++|.||+|+|..+...+...... ..+++++ .
T Consensus 290 -------------------~~V~~v~~---~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w 347 (422)
T PRK05329 290 -------------------GRVTAVWT---RNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADW 347 (422)
T ss_pred -------------------CEEEEEEe---eCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhh
Confidence 33433211 1123457899999999998876544211000 0112222 0
Q ss_pred -----------CCCceEeCCCccc------CCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 010827 392 -----------ARGQAETDETLCV------KGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAI 449 (500)
Q Consensus 392 -----------~~g~i~vd~~~~t------~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l 449 (500)
..=.+.||+.++. +..+|||+||++...+++-... --...|+..|..||++|.+..
T Consensus 348 ~~~~~~~~~p~~~~GV~~d~~~~p~~~~g~~~~~nl~a~G~vl~g~d~~~~~--~g~Gva~~ta~~a~~~~~~~~ 420 (422)
T PRK05329 348 YQRDFFAPHPFLQFGVATDATLRPLDSQGGPVIENLYAAGAVLGGYDPIREG--CGSGVALATALHAAEQIAEEA 420 (422)
T ss_pred hhhhhccCCchhhcCceECCCcCcccCCCCeeccceEEeeehhcCCchHHhC--CCchhHHHHHHHHHHHHHHhh
Confidence 0112556666654 1579999999999987651100 112368889999999988654
No 94
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.45 E-value=9e-12 Score=121.20 Aligned_cols=107 Identities=28% Similarity=0.362 Sum_probs=73.7
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcch--------------hhh--------------
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPML--------------YEL-------------- 129 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~--------------~~~-------------- 129 (500)
+.++|+|||||||||.||..+++ +|++|+|||+.+.+.-+... ..+
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~------~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sa 75 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAK------AGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSA 75 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhh------cCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHH
Confidence 45899999999999999999999 79999999999832111100 000
Q ss_pred -----------------------ccccc-----cCccccccHHHHhccCCcEEEEe-eEEEEecCCCCCCCCCceeecCc
Q 010827 130 -----------------------LSGEV-----DAWEIAPRFADLLANTGVQFFKD-RVKLLCPSDHLGVNGPMACTHGG 180 (500)
Q Consensus 130 -----------------------~~g~~-----~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~~~~~~~~~~~ 180 (500)
-.|++ ....+..-+...+++.+|+++.. +|.+++.++. .+
T Consensus 76 l~~ft~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~-----------~f 144 (408)
T COG2081 76 LARFTPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDS-----------GF 144 (408)
T ss_pred HHhCCHHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCc-----------eE
Confidence 01111 11122233445556678888775 7777776652 25
Q ss_pred EEEcCCccEEEecEEEEeCCC
Q 010827 181 TVLLESGLIVEYDWLVLSLGA 201 (500)
Q Consensus 181 ~v~~~~g~~~~~d~lIlAtG~ 201 (500)
.+.+.+++.+.+|.||||||.
T Consensus 145 ~l~t~~g~~i~~d~lilAtGG 165 (408)
T COG2081 145 RLDTSSGETVKCDSLILATGG 165 (408)
T ss_pred EEEcCCCCEEEccEEEEecCC
Confidence 788889889999999999994
No 95
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.40 E-value=7.4e-11 Score=117.71 Aligned_cols=175 Identities=20% Similarity=0.249 Sum_probs=104.0
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCccc----Ccc-----------------------hhhhcc
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF----KPM-----------------------LYELLS 131 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~----~~~-----------------------~~~~~~ 131 (500)
+++|+|||+|++|+++|.+|.+... ..++ |+|||+.+.++. ... +..++.
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~--~~~~-Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~ 77 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPR--PSGL-ISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQ 77 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCC--CCCc-eEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHH
Confidence 3789999999999999999998642 2333 999999874321 110 111111
Q ss_pred cc----ccCc-------ccc----------ccHHHHhccCC---cEEEEeeEEEEecCCCCCCCCCceeecCcEEEcCCc
Q 010827 132 GE----VDAW-------EIA----------PRFADLLANTG---VQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESG 187 (500)
Q Consensus 132 g~----~~~~-------~~~----------~~~~~~~~~~~---v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g 187 (500)
+. .+++ .+. ..+..++++.. +.++..+.+.+....+- ..+.++..+|
T Consensus 78 ~~~~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~---------~~~~~~~~~g 148 (474)
T COG4529 78 KQLQRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNA---------GGYLVTTADG 148 (474)
T ss_pred hcccccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCC---------ceEEEecCCC
Confidence 11 0000 000 11222233333 66777777766555321 1246778889
Q ss_pred cEEEecEEEEeCCCCCCCCCC-----CCccccccCCCChHHHHHHHHHHHHHHHhccCCCCccEEEEECCChhHHHHHHH
Q 010827 188 LIVEYDWLVLSLGAEPKLDVV-----PGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAAT 262 (500)
Q Consensus 188 ~~~~~d~lIlAtG~~p~~~~i-----~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~ 262 (500)
....+|.+|+|||..+..++. +|....+-..+.. +.+..++. ..+|+|+|+|.+.++....
T Consensus 149 ~~~~ad~~Vlatgh~~~~~~~~~~~~~~~~~~ia~~~~~-------~~ld~v~~-------~drVli~GsgLt~~D~v~~ 214 (474)
T COG4529 149 PSEIADIIVLATGHSAPPADPAARDLKGSPRLIADPYPA-------NALDGVDA-------DDRVLIVGSGLTSIDQVLV 214 (474)
T ss_pred CeeeeeEEEEeccCCCCCcchhhhccCCCcceeccccCC-------cccccccC-------CCceEEecCCchhHHHHHH
Confidence 899999999999976443332 2211111111221 11111111 3479999999999999999
Q ss_pred HHHHHhhcCeEEEEecCC
Q 010827 263 VSERLEEKGIVQAINVET 280 (500)
Q Consensus 263 l~~~~~~~~~vtlv~~~~ 280 (500)
|.+++.. +.||++.|..
T Consensus 215 l~~~gh~-g~It~iSRrG 231 (474)
T COG4529 215 LRRRGHK-GPITAISRRG 231 (474)
T ss_pred HhccCCc-cceEEEeccc
Confidence 9886664 4499999865
No 96
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.19 E-value=1.5e-10 Score=89.82 Aligned_cols=70 Identities=30% Similarity=0.405 Sum_probs=66.8
Q ss_pred EEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCCCCcchHHHHHHHHHhCCcEEEcCceEEEEecCc
Q 010827 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVG 318 (500)
Q Consensus 246 ~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~ 318 (500)
+|+|||||++|+|+|..|++.+.+ |+++++.+.+++.+++.....+++.|++.||++++++.+++++.++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~---vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~ 70 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKE---VTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDG 70 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSE---EEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEET
T ss_pred CEEEECcCHHHHHHHHHHHHhCcE---EEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeC
Confidence 689999999999999999998877 9999999999999999999999999999999999999999999876
No 97
>PRK09897 hypothetical protein; Provisional
Probab=98.99 E-value=4.3e-09 Score=110.10 Aligned_cols=172 Identities=17% Similarity=0.201 Sum_probs=98.0
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcc----cCc------c---------------hhhhccc-
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV----FKP------M---------------LYELLSG- 132 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~----~~~------~---------------~~~~~~g- 132 (500)
+++|+||||||+|+++|.+|.+. ....+|+|||++..++ |.+ + +..++..
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~----~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~ 76 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQ----QTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQ 76 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhc----CCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhh
Confidence 36899999999999999999884 2467999999976432 111 0 0001100
Q ss_pred ------------------cccCcccc-cc----HHHH---hccCC--cEEEEe-eEEEEecCCCCCCCCCceeecCcEEE
Q 010827 133 ------------------EVDAWEIA-PR----FADL---LANTG--VQFFKD-RVKLLCPSDHLGVNGPMACTHGGTVL 183 (500)
Q Consensus 133 ------------------~~~~~~~~-~~----~~~~---~~~~~--v~~~~~-~v~~i~~~~~~~~~~~~~~~~~~~v~ 183 (500)
...+..+. .+ +..+ +...+ +.++.. +|+.+..... .+.+.
T Consensus 77 ~~~~~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~-----------g~~V~ 145 (534)
T PRK09897 77 EDSHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNA-----------GVMLA 145 (534)
T ss_pred hHHHHHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCC-----------EEEEE
Confidence 01111100 01 1111 22233 566554 8888866543 13566
Q ss_pred cCC-ccEEEecEEEEeCCCCCCCCCCCCccccccCCCChHHHHHHHHHHHHHHHhccCCCCccEEEEECCChhHHHHHHH
Q 010827 184 LES-GLIVEYDWLVLSLGAEPKLDVVPGAAEFAFPFSTLEDACRVDRKLSELERRNFGKDSLIRVAVVGCGYSGVELAAT 262 (500)
Q Consensus 184 ~~~-g~~~~~d~lIlAtG~~p~~~~i~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~V~VvGgG~~g~e~A~~ 262 (500)
+++ +..+.+|+||+|||..+..+ .++...++ .+..+.... ..+ .+.+|+|+|.|.+++|++..
T Consensus 146 t~~gg~~i~aD~VVLAtGh~~p~~-~~~~~~yi---~~pw~~~~~-~~i-----------~~~~V~I~GtGLt~iD~v~~ 209 (534)
T PRK09897 146 TNQDLPSETFDLAVIATGHVWPDE-EEATRTYF---PSPWSGLME-AKV-----------DACNVGIMGTSLSGLDAAMA 209 (534)
T ss_pred ECCCCeEEEcCEEEECCCCCCCCC-Chhhcccc---CCCCcchhh-cCC-----------CCCeEEEECCCHHHHHHHHH
Confidence 544 46799999999999743111 11111111 111111110 000 14699999999999999999
Q ss_pred HHHHHh------------------hcCeEEEEecCCc
Q 010827 263 VSERLE------------------EKGIVQAINVETT 281 (500)
Q Consensus 263 l~~~~~------------------~~~~vtlv~~~~~ 281 (500)
|..++. +...++.+.|+..
T Consensus 210 Lt~~gG~F~~~~~~~~~l~y~~sg~~~~I~a~SRrGl 246 (534)
T PRK09897 210 VAIQHGSFIEDDKQHVVFHRDNASEKLNITLMSRTGI 246 (534)
T ss_pred HHhcCCceeccCCCcceeeecCCCCCceEEEEeCCCC
Confidence 986631 3345888888655
No 98
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.96 E-value=4.6e-08 Score=102.46 Aligned_cols=48 Identities=21% Similarity=0.153 Sum_probs=40.4
Q ss_pred EeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHCCCC
Q 010827 397 ETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRP 453 (500)
Q Consensus 397 ~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~ 453 (500)
.++.+|+++..+|+|++|+..+. .-...|..||..|+.|+...+.+++
T Consensus 347 ~l~~~le~k~~~gLf~AGqi~Gt---------~Gy~eAaa~Gl~Ag~naa~~~~~~~ 394 (617)
T TIGR00136 347 QLKPTLETKLIQGLFFAGQINGT---------TGYEEAAAQGLMAGINAALKLQNKE 394 (617)
T ss_pred hCchhheeCCCCCeEEccccCCc---------chHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34578999779999999998874 2366899999999999999998875
No 99
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.93 E-value=1.6e-09 Score=110.01 Aligned_cols=108 Identities=27% Similarity=0.332 Sum_probs=59.5
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcc---------------hhhhcc-------------
Q 010827 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPM---------------LYELLS------------- 131 (500)
Q Consensus 80 ~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~---------------~~~~~~------------- 131 (500)
+||+|||||||||.||..|++ .|++|+|+|+++...-+.. ...+..
T Consensus 1 ydviIIGgGaAGl~aA~~aa~------~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l 74 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAE------KGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSAL 74 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHH------TT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHh------CCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHH
Confidence 689999999999999999999 7999999999973211000 000000
Q ss_pred ------------------------c-----cccCccccccHHHHhccCCcEEEEe-eEEEEecCCCCCCCCCceeecCcE
Q 010827 132 ------------------------G-----EVDAWEIAPRFADLLANTGVQFFKD-RVKLLCPSDHLGVNGPMACTHGGT 181 (500)
Q Consensus 132 ------------------------g-----~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~~~~~~~~~~~~ 181 (500)
+ .....++...+...+++.+++++.+ +|..+....+. .+.
T Consensus 75 ~~f~~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~----------~f~ 144 (409)
T PF03486_consen 75 KRFSPEDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDG----------VFG 144 (409)
T ss_dssp HHS-HHHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTE----------EEE
T ss_pred hcCCHHHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCc----------eeE
Confidence 0 0011112233445556678888876 88888654331 135
Q ss_pred EEcCCccEEEecEEEEeCCCCC
Q 010827 182 VLLESGLIVEYDWLVLSLGAEP 203 (500)
Q Consensus 182 v~~~~g~~~~~d~lIlAtG~~p 203 (500)
+.+++...+.+|.||||||...
T Consensus 145 v~~~~~~~~~a~~vILAtGG~S 166 (409)
T PF03486_consen 145 VKTKNGGEYEADAVILATGGKS 166 (409)
T ss_dssp EEETTTEEEEESEEEE----SS
T ss_pred eeccCcccccCCEEEEecCCCC
Confidence 7775667999999999999753
No 100
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.87 E-value=1e-07 Score=100.04 Aligned_cols=43 Identities=23% Similarity=0.153 Sum_probs=37.4
Q ss_pred CCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHC
Q 010827 399 DETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIN 450 (500)
Q Consensus 399 d~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 450 (500)
+.+|+++..+++|.+|-..+. .-...|..||-.|+.|.+..+.
T Consensus 351 ~~~Le~k~~~~lf~AGQinGt---------~GYeEaaaqGl~AgiNaa~~~~ 393 (618)
T PRK05192 351 KPTLETKKIKGLFFAGQINGT---------TGYEEAAAQGLIAGINAALKVQ 393 (618)
T ss_pred chhheecCCCCeEECcccCCC---------hHHHHHHHHHHHHHHHHHHHhc
Confidence 467888889999999999885 4567899999999999998887
No 101
>PLN02463 lycopene beta cyclase
Probab=98.87 E-value=1.4e-08 Score=104.52 Aligned_cols=113 Identities=19% Similarity=0.309 Sum_probs=74.6
Q ss_pred CCCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcc-------hh-----h----hccc-------
Q 010827 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPM-------LY-----E----LLSG------- 132 (500)
Q Consensus 76 ~~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~-------~~-----~----~~~g------- 132 (500)
....+||+||||||||+++|..|++ +|++|+|+|+.+...+... +. . ...+
T Consensus 25 ~~~~~DVvIVGaGpAGLalA~~La~------~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~ 98 (447)
T PLN02463 25 KSRVVDLVVVGGGPAGLAVAQQVSE------AGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDD 98 (447)
T ss_pred cccCceEEEECCCHHHHHHHHHHHH------CCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeC
Confidence 3445899999999999999999998 6999999999764333211 00 0 0000
Q ss_pred -c----------ccCccccccHHHHhccCCcEEEEeeEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCC
Q 010827 133 -E----------VDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGA 201 (500)
Q Consensus 133 -~----------~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~ 201 (500)
. .+...+...+.+.+...+++++.++|++++..... ..+.++++..+.+|.||.|+|.
T Consensus 99 ~~~~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~-----------~~V~~~dG~~i~A~lVI~AdG~ 167 (447)
T PLN02463 99 GKKKDLDRPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESK-----------SLVVCDDGVKIQASLVLDATGF 167 (447)
T ss_pred CCCccccCcceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCe-----------EEEEECCCCEEEcCEEEECcCC
Confidence 0 00000111223333456899988888888765431 3577788889999999999998
Q ss_pred CCCC
Q 010827 202 EPKL 205 (500)
Q Consensus 202 ~p~~ 205 (500)
....
T Consensus 168 ~s~l 171 (447)
T PLN02463 168 SRCL 171 (447)
T ss_pred CcCc
Confidence 7543
No 102
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.77 E-value=2.7e-07 Score=93.03 Aligned_cols=155 Identities=16% Similarity=0.066 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHhhcCeEEEEecCCccCCCC-CcchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCccccc
Q 010827 257 VELAATVSERLEEKGIVQAINVETTICPTG-TPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNI 335 (500)
Q Consensus 257 ~e~A~~l~~~~~~~~~vtlv~~~~~~~~~~-~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~ 335 (500)
.++...|.+... ..+++- +.+-|.. +..+.+.+.+.+++.|++++.+.+|.++..++
T Consensus 236 ~~~~~~L~~~~g----~~v~E~-ptlPPSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~----------------- 293 (419)
T TIGR03378 236 LELLRELEQATG----LTLCEL-PTMPPSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEG----------------- 293 (419)
T ss_pred HHHHHHHHHHHC----CCEEeC-CCCCCCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeC-----------------
Confidence 345555544333 344443 3333333 45677888899999999999999999988655
Q ss_pred ccccCCcceeEeecccccCCCccEEeecEEEEecCCC-CCCCCCCCCCC---ccCCCCCC-------------------C
Q 010827 336 AADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK-PLLPHVEPPNN---RLHDLPLN-------------------A 392 (500)
Q Consensus 336 ~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~-p~~~~~~~~~~---~~~~~~~~-------------------~ 392 (500)
++++.... ..+....+.+|.+|+|+|.- .. .++.+... ..+++++. .
T Consensus 294 ------~~v~~V~t---~~g~~~~l~AD~vVLAaGaw~S~-gL~a~l~~i~Epif~L~v~~~~~r~~W~~~~ff~~~p~~ 363 (419)
T TIGR03378 294 ------NRVTRIHT---RNHRDIPLRADHFVLASGSFFSN-GLVAEFDKIYEPIFGLDVLQLPDRDQWYQHRFFAPHPFM 363 (419)
T ss_pred ------CeEEEEEe---cCCccceEECCEEEEccCCCcCH-HHHhhcCceeeeccCCCcCCCcchhhhcchhhcCCChhh
Confidence 33432211 11113579999999999977 33 22222110 01223220 1
Q ss_pred CCceEeCCCcccC----CCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHH
Q 010827 393 RGQAETDETLCVK----GHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNL 445 (500)
Q Consensus 393 ~g~i~vd~~~~t~----~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i 445 (500)
.=.+.+|+.+|.. ..+|+|++|-+.+..|+-... --...|+..|..||++|
T Consensus 364 ~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~~~~g--cG~GVai~Ta~~aa~~i 418 (419)
T TIGR03378 364 QFGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDPIFEG--CGSGVAVSTALHAAEQI 418 (419)
T ss_pred hcCceEccccCccCCCcccccceEechhhcCCChHhcC--CCchhHHHHHHHHHHhh
Confidence 1237789888831 378999999999987761100 01226888888888876
No 103
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.76 E-value=5.5e-09 Score=111.77 Aligned_cols=102 Identities=13% Similarity=0.033 Sum_probs=63.6
Q ss_pred ccEEEEECCCh--hHHHHHHHHHHHHhhcCeEEEEecCCccCCC--------------CCcchHHHHHHHHHhCCcEEEc
Q 010827 244 LIRVAVVGCGY--SGVELAATVSERLEEKGIVQAINVETTICPT--------------GTPGNREAALKVLSARKVQLVL 307 (500)
Q Consensus 244 ~k~V~VvGgG~--~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~--------------~~~~~~~~~~~~l~~~gV~i~~ 307 (500)
++++.|+|++. .+.+++..+...+.. ++++.+...++.. ....+...+.+.+++.|++|+.
T Consensus 157 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~~Gv~i~~ 233 (574)
T PRK12842 157 LKTITFIGMMFNSSNADLKHFFNATRSL---TSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALDLGIPILT 233 (574)
T ss_pred cccccccceecccchHHHHHHHhhccch---hHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHhCCCEEEe
Confidence 57899999988 677877776554433 3333222222211 1134556677788899999999
Q ss_pred CceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccEEeec-EEEEecCCCC
Q 010827 308 GYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEAD-LVLWTVGSKP 373 (500)
Q Consensus 308 ~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~~D-~vi~a~G~~p 373 (500)
++.++++..+++.. .+|++.. .++...+.++ .||+|+|..+
T Consensus 234 ~~~v~~l~~~~g~V--------------------~GV~~~~-----~~~~~~i~a~k~VVlAtGg~~ 275 (574)
T PRK12842 234 GTPARELLTEGGRV--------------------VGARVID-----AGGERRITARRGVVLACGGFS 275 (574)
T ss_pred CCEEEEEEeeCCEE--------------------EEEEEEc-----CCceEEEEeCCEEEEcCCCcc
Confidence 99999987654211 2344431 1122357786 7999999765
No 104
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.70 E-value=5e-07 Score=94.08 Aligned_cols=46 Identities=13% Similarity=0.091 Sum_probs=37.6
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCc
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP 124 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~ 124 (500)
..+++|+|||||.|||+||.+|.+.+ ..+|++|+|+|+.+..+...
T Consensus 20 ~~~~~a~IIGaGiAGLAAA~~L~~dg--~~~G~~VtIlEk~~~~GG~~ 65 (576)
T PRK13977 20 VDNKKAYIIGSGLASLAAAVFLIRDG--QMPGENITILEELDVPGGSL 65 (576)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcc--CCCCCcEEEEeCCCCCCCCc
Confidence 34589999999999999999999832 12589999999999866543
No 105
>PRK06847 hypothetical protein; Provisional
Probab=98.67 E-value=1e-07 Score=96.77 Aligned_cols=111 Identities=27% Similarity=0.342 Sum_probs=70.6
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccC-------c----------chhhh-----------
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFK-------P----------MLYEL----------- 129 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~-------~----------~~~~~----------- 129 (500)
++++|+||||||+||++|..|++ .|++|+|+|+.+..... + .+..+
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~------~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~ 76 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRR------AGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVD 76 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHh------CCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceE
Confidence 35799999999999999999998 68999999997631100 0 00000
Q ss_pred -c--cccc----cC----------------ccccccHHHHhccCCcEEEEe-eEEEEecCCCCCCCCCceeecCcEEEcC
Q 010827 130 -L--SGEV----DA----------------WEIAPRFADLLANTGVQFFKD-RVKLLCPSDHLGVNGPMACTHGGTVLLE 185 (500)
Q Consensus 130 -~--~g~~----~~----------------~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~~~~~~~~~~~~v~~~ 185 (500)
. .|.. .. ..+...+.+.+.+.+++++.+ +++.++.... ...+.+.
T Consensus 77 ~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~-----------~~~v~~~ 145 (375)
T PRK06847 77 LFDPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDD-----------GVTVTFS 145 (375)
T ss_pred EECCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCC-----------EEEEEEc
Confidence 0 0000 00 011112333444567888876 7888765432 1246667
Q ss_pred CccEEEecEEEEeCCCCCCC
Q 010827 186 SGLIVEYDWLVLSLGAEPKL 205 (500)
Q Consensus 186 ~g~~~~~d~lIlAtG~~p~~ 205 (500)
++.++.+|.||.|+|..+..
T Consensus 146 ~g~~~~ad~vI~AdG~~s~~ 165 (375)
T PRK06847 146 DGTTGRYDLVVGADGLYSKV 165 (375)
T ss_pred CCCEEEcCEEEECcCCCcch
Confidence 78889999999999976543
No 106
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.64 E-value=1.2e-07 Score=92.79 Aligned_cols=34 Identities=29% Similarity=0.457 Sum_probs=31.5
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCC
Q 010827 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (500)
Q Consensus 80 ~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (500)
+||+||||||+|+++|..|++ .|++|+|+|+.+.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~------~g~~v~vie~~~~ 34 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLAD------KGLRVLLLEKKSF 34 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHH------CCCeEEEEeccCC
Confidence 589999999999999999998 6899999999864
No 107
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.64 E-value=1.1e-07 Score=97.23 Aligned_cols=107 Identities=18% Similarity=0.223 Sum_probs=68.7
Q ss_pred eEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcc-------h-----h----hhccccc----------
Q 010827 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPM-------L-----Y----ELLSGEV---------- 134 (500)
Q Consensus 81 ~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~-------~-----~----~~~~g~~---------- 134 (500)
||+||||||||+++|..|++ .|++|+|||+.+..++... + . ....+..
T Consensus 1 DviIiGaG~AGl~~A~~la~------~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELAR------PGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRK 74 (388)
T ss_pred CEEEECCCHHHHHHHHHHHh------CCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchh
Confidence 69999999999999999988 6999999999865432110 0 0 0000000
Q ss_pred --------cCccccccHHHHhccCCcEEEEeeEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCC
Q 010827 135 --------DAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEP 203 (500)
Q Consensus 135 --------~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p 203 (500)
+...+...+.+.+.+.++.++.+++..+...... .+.++++++..+.+|.||.|+|..+
T Consensus 75 ~~~~~~~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~----------~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 75 LGTAYGSVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVA----------LSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred cCCceeEEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCc----------eeEEEeCCCCEEEeCEEEECCCCch
Confidence 0000111223334455788887788877654210 1346667777899999999999876
No 108
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.64 E-value=1.4e-07 Score=96.46 Aligned_cols=36 Identities=33% Similarity=0.464 Sum_probs=32.8
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (500)
...++|+||||||+|+++|..|++ +|++|+|||+.+
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~------~G~~v~liE~~~ 39 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALAD------AGLSVALVEGRE 39 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhc------CCCEEEEEeCCC
Confidence 455899999999999999999998 799999999975
No 109
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.63 E-value=6.2e-07 Score=95.29 Aligned_cols=58 Identities=17% Similarity=0.105 Sum_probs=39.7
Q ss_pred CCCceEeCCCcccCCCCCEEEeccccc-ccCCCCCCCCchHHHHHHHHHHHHHHHHHHHC
Q 010827 392 ARGQAETDETLCVKGHPRIFALGDSSA-LRDSSGRPLPATAQVAFQQADFAGWNLWAAIN 450 (500)
Q Consensus 392 ~~g~i~vd~~~~t~~~~~vyaiGD~~~-~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 450 (500)
..|.|.||..++| +.|++||+|+|+. ......+........++..|+.+++++.....
T Consensus 356 t~GGi~vd~~~~t-~i~GLyAaGe~~~~g~hGa~~l~~~sl~~~~v~G~~ag~~aa~~~~ 414 (541)
T PRK07804 356 SCGGVVTDVYGRT-SVPGLYAAGEVACTGVHGANRLASNSLLEGLVVGERAGAAAAAHAA 414 (541)
T ss_pred cCCCEEECCCCcc-cCCCeEEcccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3577999999998 9999999999974 21100111123455677788888888876553
No 110
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.58 E-value=2.8e-06 Score=81.27 Aligned_cols=178 Identities=13% Similarity=0.099 Sum_probs=107.8
Q ss_pred cEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCCC--------------------------------------
Q 010827 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTG-------------------------------------- 286 (500)
Q Consensus 245 k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~~-------------------------------------- 286 (500)
..|+|||+|++|+-+|..|++.+.+ |.++++...+....
T Consensus 26 ~DVvIVGgGpAGl~AA~~la~~G~~---V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd 102 (257)
T PRK04176 26 VDVAIVGAGPSGLTAAYYLAKAGLK---VAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVAD 102 (257)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCe---EEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceecc
Confidence 4899999999999999999987766 99999865432110
Q ss_pred CcchHHHHHHHHHhCCcEEEcCceEEEEecCcc-ccccccCCCCCcccccccccCCcceeEeecccc---cCCCccEEee
Q 010827 287 TPGNREAALKVLSARKVQLVLGYFVRCIRRVGE-FEASVKQPESGAIPNIAADKNSDKYILELQPAI---KGLESQIFEA 362 (500)
Q Consensus 287 ~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~---~~~~~~~l~~ 362 (500)
...+...+.+...+.|++++.++.+.++..+++ .. .++.+...... ...+..++.+
T Consensus 103 ~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V--------------------~Gvv~~~~~v~~~g~~~~~~~i~A 162 (257)
T PRK04176 103 SVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRV--------------------AGVVINWTPVEMAGLHVDPLTIEA 162 (257)
T ss_pred HHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcE--------------------EEEEEccccccccCCCCCcEEEEc
Confidence 012233455566778999999999988865331 11 12332211000 1124468999
Q ss_pred cEEEEecCCCCCCC-CC---------CCCCCccCCCCCCCCCceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHH
Q 010827 363 DLVLWTVGSKPLLP-HV---------EPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQ 432 (500)
Q Consensus 363 D~vi~a~G~~p~~~-~~---------~~~~~~~~~~~~~~~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~ 432 (500)
+.||.|+|...... .+ ...+ ..+...+......|+.+-+. +|++|++|-++...+ |.|+..-+.
T Consensus 163 k~VI~ATG~~a~v~~~l~~~~~~~~~~~~g--~~~~~~~~~e~~v~~~t~~~--~~g~~~~gm~~~~~~--~~~rmg~~f 236 (257)
T PRK04176 163 KAVVDATGHDAEVVSVLARKGPELGIEVPG--EKSMWAERGEKLVVENTGEV--YPGLYVAGMAANAVH--GLPRMGPIF 236 (257)
T ss_pred CEEEEEeCCCcHHHHHHHHHcCCcccccCC--ccccccCchHHHHHhcCCeE--cCCEEEeehhhhhhc--CCCccCchh
Confidence 99999999654311 00 0000 01111222223344444443 899999999987643 333332333
Q ss_pred HH-HHHHHHHHHHHHHHHCC
Q 010827 433 VA-FQQADFAGWNLWAAIND 451 (500)
Q Consensus 433 ~A-~~~g~~aa~~i~~~l~~ 451 (500)
-+ ...|+.+|+.|..+|..
T Consensus 237 g~m~~sg~~~a~~~~~~~~~ 256 (257)
T PRK04176 237 GGMLLSGKKVAELILEKLKK 256 (257)
T ss_pred HhHHHhHHHHHHHHHHHhhc
Confidence 33 37999999999988763
No 111
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.58 E-value=2.4e-07 Score=94.79 Aligned_cols=99 Identities=15% Similarity=0.268 Sum_probs=73.7
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEEe-
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (500)
.++|+|||+|+.|+++|..|++ .|.+|+|+|+.+.+. ...........+.+.+++.+++++.+
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~------~g~~Vtlv~~~~~~l----------~~~~~~~~~~~l~~~l~~~GV~i~~~~ 207 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQ------RRCKVTVIELAATVM----------GRNAPPPVQRYLLQRHQQAGVRILLNN 207 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHH------cCCeEEEEecCCcch----------hhhcCHHHHHHHHHHHHHCCCEEEeCC
Confidence 4789999999999999999988 688999999987632 11111222334556667789999986
Q ss_pred eEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCCCC
Q 010827 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKL 205 (500)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p~~ 205 (500)
.+.+++.... ..+.+.++..+.+|.||+|+|.+|+.
T Consensus 208 ~V~~i~~~~~------------~~v~l~~g~~i~aD~Vv~a~G~~pn~ 243 (396)
T PRK09754 208 AIEHVVDGEK------------VELTLQSGETLQADVVIYGIGISAND 243 (396)
T ss_pred eeEEEEcCCE------------EEEEECCCCEEECCEEEECCCCChhh
Confidence 7778764222 14566778889999999999998863
No 112
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.58 E-value=1.1e-07 Score=101.36 Aligned_cols=72 Identities=8% Similarity=-0.099 Sum_probs=52.8
Q ss_pred ccEEEEECCChhHHHHHHH-------HHHHHhhcCeEEEEecCCccCCCCCcchHHHHHHHHHhCCcEEEcCceEEEEec
Q 010827 244 LIRVAVVGCGYSGVELAAT-------VSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRR 316 (500)
Q Consensus 244 ~k~V~VvGgG~~g~e~A~~-------l~~~~~~~~~vtlv~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~ 316 (500)
++..+++|++..+++.+.. +.+.+.+ |+++.............+...+.+.+++.||++++++.++++..
T Consensus 160 p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~ 236 (557)
T PRK07843 160 PLNMVVMQQDYVWLNLLKRHPRGVLRALKVGAR---TLWAKATGKNLLGMGQALAAGLRIGLQRAGVPVLLNTPLTDLYV 236 (557)
T ss_pred cccccccHHHHHHHHhhhcCchhHHHHHHHHHH---HHHHhccCCCcccCcHHHHHHHHHHHHcCCCEEEeCCEEEEEEE
Confidence 5688999999999987754 4555555 55544434433445566777888889999999999999999986
Q ss_pred Cc
Q 010827 317 VG 318 (500)
Q Consensus 317 ~~ 318 (500)
++
T Consensus 237 ~~ 238 (557)
T PRK07843 237 ED 238 (557)
T ss_pred eC
Confidence 43
No 113
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.58 E-value=2.3e-07 Score=71.81 Aligned_cols=70 Identities=26% Similarity=0.413 Sum_probs=55.2
Q ss_pred eEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEEe-eE
Q 010827 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD-RV 159 (500)
Q Consensus 81 ~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~-~v 159 (500)
+|+|||||+.|+++|..|++ .|.+|+|+++++.+. ..........+.+.+++.+++++.+ .+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~------~g~~vtli~~~~~~~-----------~~~~~~~~~~~~~~l~~~gV~v~~~~~v 63 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAE------LGKEVTLIERSDRLL-----------PGFDPDAAKILEEYLRKRGVEVHTNTKV 63 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHH------TTSEEEEEESSSSSS-----------TTSSHHHHHHHHHHHHHTTEEEEESEEE
T ss_pred CEEEECcCHHHHHHHHHHHH------hCcEEEEEeccchhh-----------hhcCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence 68999999999999999999 688999999998732 1122334555677888889999997 78
Q ss_pred EEEecCCC
Q 010827 160 KLLCPSDH 167 (500)
Q Consensus 160 ~~i~~~~~ 167 (500)
.+++.+..
T Consensus 64 ~~i~~~~~ 71 (80)
T PF00070_consen 64 KEIEKDGD 71 (80)
T ss_dssp EEEEEETT
T ss_pred EEEEEeCC
Confidence 88866543
No 114
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.57 E-value=1.3e-07 Score=94.91 Aligned_cols=32 Identities=31% Similarity=0.610 Sum_probs=30.6
Q ss_pred eEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC
Q 010827 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (500)
Q Consensus 81 ~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (500)
||+|||||++|+++|++|++ +|++|+|+|++.
T Consensus 1 DvvIIGaGi~G~~~A~~La~------~G~~V~l~e~~~ 32 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELAR------RGHSVTLLERGD 32 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHH------TTSEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHH------CCCeEEEEeecc
Confidence 79999999999999999999 799999999995
No 115
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.57 E-value=3.5e-07 Score=92.98 Aligned_cols=100 Identities=25% Similarity=0.357 Sum_probs=75.6
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEEe-
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (500)
.++|+|||||+.|+++|..|++ .|.+|+++++.+.+.. ..........+.+.+++.+++++.+
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~------~g~~Vtlv~~~~~~l~----------~~~~~~~~~~l~~~l~~~gV~i~~~~ 204 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCR------AGKAVTLVDNAASLLA----------SLMPPEVSSRLQHRLTEMGVHLLLKS 204 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHh------cCCeEEEEecCCcccc----------hhCCHHHHHHHHHHHHhCCCEEEECC
Confidence 4789999999999999999988 6889999999876321 1111223344566777889999875
Q ss_pred eEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCCCC
Q 010827 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKL 205 (500)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p~~ 205 (500)
.+.+++.+... ..+.+.++..+.+|.||+|+|.+|..
T Consensus 205 ~v~~i~~~~~~-----------~~v~~~~g~~i~~D~vI~a~G~~p~~ 241 (377)
T PRK04965 205 QLQGLEKTDSG-----------IRATLDSGRSIEVDAVIAAAGLRPNT 241 (377)
T ss_pred eEEEEEccCCE-----------EEEEEcCCcEEECCEEEECcCCCcch
Confidence 78888754321 24667788899999999999998863
No 116
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.56 E-value=2.9e-07 Score=87.96 Aligned_cols=37 Identities=24% Similarity=0.369 Sum_probs=33.5
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCc
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF 120 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~ 120 (500)
..+||+||||||||++||+.|++ +|++|+|+|++..+
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~------~G~~V~liEk~~~~ 60 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAK------AGLKVAVFERKLSF 60 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHh------CCCeEEEEecCCCC
Confidence 34899999999999999999998 79999999998754
No 117
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.56 E-value=6.8e-07 Score=78.78 Aligned_cols=107 Identities=27% Similarity=0.377 Sum_probs=66.4
Q ss_pred EEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCc---ccCcc------------------------hhhhccccc-
Q 010827 83 CILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF---VFKPM------------------------LYELLSGEV- 134 (500)
Q Consensus 83 vIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~---~~~~~------------------------~~~~~~g~~- 134 (500)
+|||+||+|++++.+|.+.. ......+|+|||+++.. .|.+. +..++....
T Consensus 1 AIIG~G~~G~~~l~~L~~~~-~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~ 79 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA-DPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGA 79 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc-CCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCc
Confidence 59999999999999999963 12368999999996631 11110 000110000
Q ss_pred ------cCccccc----------cHHHHhcc--C--CcEEEEeeEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecE
Q 010827 135 ------DAWEIAP----------RFADLLAN--T--GVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDW 194 (500)
Q Consensus 135 ------~~~~~~~----------~~~~~~~~--~--~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~ 194 (500)
....+.+ .+....+. . .+.++..+|+.++.... ++.+.+.+|..+.+|.
T Consensus 80 ~~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~-----------~~~v~~~~g~~~~~d~ 148 (156)
T PF13454_consen 80 DEAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDD-----------GYRVVTADGQSIRADA 148 (156)
T ss_pred ccccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCC-----------cEEEEECCCCEEEeCE
Confidence 0011110 11122211 1 35666779999987765 2468888999999999
Q ss_pred EEEeCCC
Q 010827 195 LVLSLGA 201 (500)
Q Consensus 195 lIlAtG~ 201 (500)
||||||.
T Consensus 149 VvLa~Gh 155 (156)
T PF13454_consen 149 VVLATGH 155 (156)
T ss_pred EEECCCC
Confidence 9999995
No 118
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.55 E-value=1.9e-06 Score=90.57 Aligned_cols=57 Identities=12% Similarity=0.070 Sum_probs=41.5
Q ss_pred CCCceEeCCCcccCCCCCEEEeccccc-ccCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 010827 392 ARGQAETDETLCVKGHPRIFALGDSSA-LRDSSGRPLPATAQVAFQQADFAGWNLWAAI 449 (500)
Q Consensus 392 ~~g~i~vd~~~~t~~~~~vyaiGD~~~-~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l 449 (500)
-.|.|.||...|+ +.|++||+|+|+. ......+........+.-.|+.+++++....
T Consensus 332 t~GGi~vd~~~~t-~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~~ 389 (488)
T TIGR00551 332 TCGGISVDDHGRT-TVPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAEDISRRP 389 (488)
T ss_pred ecCCEEECCCCcc-cCCCEEECccccccccCcccccchhHHHHHHHHHHHHHHHHHhhc
Confidence 3577999999998 8999999999974 2111111123456788899999999987654
No 119
>PRK08275 putative oxidoreductase; Provisional
Probab=98.55 E-value=8.6e-07 Score=94.59 Aligned_cols=50 Identities=22% Similarity=0.189 Sum_probs=41.3
Q ss_pred CceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHCC
Q 010827 394 GQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 451 (500)
Q Consensus 394 g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 451 (500)
|.|.||..++| +.|++||+|||+... ......+...|+.++.++...+.+
T Consensus 357 Ggi~~d~~~~t-~i~gl~a~Ge~~~~~-------~~~~~~~~~~G~~a~~~~~~~~~~ 406 (554)
T PRK08275 357 SGVWVNEKAET-TVPGLYAAGDMASVP-------HNYMLGAFTYGWFAGENAAEYVAG 406 (554)
T ss_pred CcEEECCCCcc-CCCCEEECcccCCch-------hHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67999999999 999999999997531 355667889999999998877654
No 120
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.54 E-value=3.4e-07 Score=93.69 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=34.6
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCccc
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF 122 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~ 122 (500)
+.+||+||||||||++||+.|++ .|++|+|+|+.+....
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~------~G~~VlvlEk~~~~G~ 40 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAK------AGLDVLVLEKGSEPGA 40 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHH------cCCeEEEEecCCCCCC
Confidence 45899999999999999999999 6899999999875444
No 121
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.54 E-value=1.8e-06 Score=92.44 Aligned_cols=59 Identities=19% Similarity=0.151 Sum_probs=43.3
Q ss_pred CCCceEeCCCcccCCCCCEEEecccccc-cCCCCCCCCchHHHHHHHHHHHHHHHHHHHCC
Q 010827 392 ARGQAETDETLCVKGHPRIFALGDSSAL-RDSSGRPLPATAQVAFQQADFAGWNLWAAIND 451 (500)
Q Consensus 392 ~~g~i~vd~~~~t~~~~~vyaiGD~~~~-~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 451 (500)
..|.|.||...+| +.|++||+|+|+.. .....+........|+-.|+.+++++...+..
T Consensus 357 t~GGi~vd~~~~t-~i~GLyAaGe~~~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~~ 416 (582)
T PRK09231 357 TMGGIETDQNCET-RIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAGEQAAERAAT 416 (582)
T ss_pred eCCCEEECCCCcc-ccCCEEecccccccccCCCCCcchhHHHHHHHHHHHHHHHHHHhhhc
Confidence 3578999999998 99999999999752 11111111345677889999999999887653
No 122
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.53 E-value=1.8e-06 Score=92.01 Aligned_cols=58 Identities=16% Similarity=0.095 Sum_probs=43.0
Q ss_pred CCceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHCC
Q 010827 393 RGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 451 (500)
Q Consensus 393 ~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 451 (500)
.|.|.+|...|+ ..|++||+|+++................|+..|+.|++++...+.+
T Consensus 348 ~GGi~vd~~~~t-~IpGLyAaGE~~gg~hG~~rlgG~sl~~a~v~Gr~Ag~~aa~~~~~ 405 (543)
T PRK06263 348 MGGIRINEDCET-NIPGLFACGEVAGGVHGANRLGGNALADTQVFGAIAGKSAAKNAEN 405 (543)
T ss_pred cCCEEECCCCcc-cCCCeEeccccccCCCCCCccchhhhhhhHHHHHHHHHHHHHHhhh
Confidence 477999999998 9999999999975422111111335667889999999999877653
No 123
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.53 E-value=2.5e-07 Score=95.03 Aligned_cols=36 Identities=31% Similarity=0.468 Sum_probs=31.3
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (500)
++||+||||||+|+++|..|++.+ .|++|+|+|+.+
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g----~g~~v~liE~~~ 36 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAA----PHLPVTVVDAAP 36 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCC----CCCEEEEEeCCC
Confidence 378999999999999999999831 259999999975
No 124
>PLN02697 lycopene epsilon cyclase
Probab=98.53 E-value=3.5e-07 Score=95.86 Aligned_cols=110 Identities=15% Similarity=0.189 Sum_probs=68.4
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCc-----chh-----hhc-----------c-cc--
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP-----MLY-----ELL-----------S-GE-- 133 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~-----~~~-----~~~-----------~-g~-- 133 (500)
..+||+||||||||+++|..|++ .|++|+|||+...+.... .+. ..+ . +.
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak------~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~ 180 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAK------LGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPI 180 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHh------CCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCcee
Confidence 45899999999999999999998 799999999863221110 000 000 0 00
Q ss_pred --------ccCccccccHHHHhccCCcEEEEeeEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCC
Q 010827 134 --------VDAWEIAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEP 203 (500)
Q Consensus 134 --------~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p 203 (500)
++...+...+.+.+.+.+++++..+|+.+...... + ..+...++..+.++.||.|+|...
T Consensus 181 ~~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~------~----~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 181 MIGRAYGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDG------L----RLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred eccCcccEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCc------E----EEEEEcCCcEEECCEEEECCCcCh
Confidence 00000111223333456889877888888654321 0 113445677899999999999765
No 125
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.53 E-value=5.6e-07 Score=92.76 Aligned_cols=36 Identities=25% Similarity=0.409 Sum_probs=32.9
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCC
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (500)
..+||+||||||||+++|..|++ .|++|+|||+.+.
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~------~G~~v~v~E~~~~ 52 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKD------SGLRIALIEAQPA 52 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhc------CCCEEEEEecCCc
Confidence 35899999999999999999998 7999999999764
No 126
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.53 E-value=3.5e-07 Score=93.36 Aligned_cols=32 Identities=22% Similarity=0.431 Sum_probs=30.4
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCC
Q 010827 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQS 117 (500)
Q Consensus 80 ~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~ 117 (500)
+||+||||||||+++|+.|++ .|++|+|+|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~------~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLAR------AGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHh------CCCcEEEEECC
Confidence 589999999999999999999 69999999997
No 127
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.52 E-value=3.2e-07 Score=91.47 Aligned_cols=105 Identities=23% Similarity=0.301 Sum_probs=65.1
Q ss_pred eEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEE-cCCCCcccC---cchhh-----------hcccc------------
Q 010827 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLV-DQSERFVFK---PMLYE-----------LLSGE------------ 133 (500)
Q Consensus 81 ~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~li-e~~~~~~~~---~~~~~-----------~~~g~------------ 133 (500)
||+|||||.||++||..+++ .|++|+|+ .+.+.+... |.+.. .++|.
T Consensus 1 DViVVGgG~AG~eAA~aaAr------~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~ 74 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAAR------MGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHF 74 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHH------TT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEE
T ss_pred CEEEECCCHHHHHHHHHHHH------CCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhh
Confidence 79999999999999999999 69999999 444432221 11100 01110
Q ss_pred -----------------ccCccccccHHHHhcc-CCcEEEEeeEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEE
Q 010827 134 -----------------VDAWEIAPRFADLLAN-TGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWL 195 (500)
Q Consensus 134 -----------------~~~~~~~~~~~~~~~~-~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~l 195 (500)
.+...+...+++.++. .++.+++++|+.+..+... -.-|.+.+|..+.+|.|
T Consensus 75 ~~lN~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~----------v~GV~~~~g~~~~a~~v 144 (392)
T PF01134_consen 75 RMLNRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGK----------VKGVVTKDGEEIEADAV 144 (392)
T ss_dssp EEESTTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTE----------EEEEEETTSEEEEECEE
T ss_pred hcccccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCe----------EEEEEeCCCCEEecCEE
Confidence 0111122223444444 5899999999999776542 12477788999999999
Q ss_pred EEeCCC
Q 010827 196 VLSLGA 201 (500)
Q Consensus 196 IlAtG~ 201 (500)
|+|||.
T Consensus 145 VlaTGt 150 (392)
T PF01134_consen 145 VLATGT 150 (392)
T ss_dssp EE-TTT
T ss_pred EEeccc
Confidence 999998
No 128
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.52 E-value=4.1e-07 Score=93.95 Aligned_cols=36 Identities=28% Similarity=0.439 Sum_probs=32.9
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCC
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (500)
..+||+||||||||++||+.|++ .|++|+|+|+.+.
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~------~G~~V~llEr~~~ 39 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAR------EGAQVLVIERGNS 39 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHh------CCCeEEEEEcCCC
Confidence 35899999999999999999999 7999999999864
No 129
>PRK06834 hypothetical protein; Provisional
Probab=98.51 E-value=5.5e-07 Score=94.45 Aligned_cols=111 Identities=23% Similarity=0.296 Sum_probs=69.6
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcc--c-Cc--ch-------------hhhc--------cc
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV--F-KP--ML-------------YELL--------SG 132 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~--~-~~--~~-------------~~~~--------~g 132 (500)
.++|+||||||+|+.+|..|++ .|++|+|||+.+... . .. +. ..+. .+
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~------~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~ 76 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELAL------AGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTG 76 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHH------CCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccce
Confidence 4899999999999999999999 799999999976311 0 00 00 0000 00
Q ss_pred ----cccCcc---------------ccccHHHHhccCCcEEEEe-eEEEEecCCCCCCCCCceeecCcEEEcCCccEEEe
Q 010827 133 ----EVDAWE---------------IAPRFADLLANTGVQFFKD-RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEY 192 (500)
Q Consensus 133 ----~~~~~~---------------~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~ 192 (500)
...... +...+.+.+++.+++++.+ +++.+..+... ..+++.++.++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~-----------v~v~~~~g~~i~a 145 (488)
T PRK06834 77 FAATRLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTG-----------VDVELSDGRTLRA 145 (488)
T ss_pred eeeEecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCe-----------EEEEECCCCEEEe
Confidence 000000 0011233345567888775 77777654331 2455566778999
Q ss_pred cEEEEeCCCCCCCC
Q 010827 193 DWLVLSLGAEPKLD 206 (500)
Q Consensus 193 d~lIlAtG~~p~~~ 206 (500)
|+||.|.|.....-
T Consensus 146 ~~vVgADG~~S~vR 159 (488)
T PRK06834 146 QYLVGCDGGRSLVR 159 (488)
T ss_pred CEEEEecCCCCCcH
Confidence 99999999876543
No 130
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.50 E-value=4.8e-07 Score=92.94 Aligned_cols=34 Identities=32% Similarity=0.490 Sum_probs=31.4
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (500)
.+||+||||||+|+++|..|++ .|++|+|||+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~------~G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQG------SGLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhc------CCCEEEEEcCCC
Confidence 3689999999999999999998 799999999875
No 131
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.50 E-value=6.3e-07 Score=93.05 Aligned_cols=99 Identities=18% Similarity=0.264 Sum_probs=72.6
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEEe-
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (500)
+++|+|||||++|+++|..|++ .|.+|+++++.+.+. + .. ...+...+.+.+++.+++++.+
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~------~g~~Vtli~~~~~~l---------~-~~-~~~~~~~~~~~l~~~GI~i~~~~ 219 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNK------LGSKVTVLDAASTIL---------P-RE-EPSVAALAKQYMEEDGITFLLNA 219 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHH------cCCeEEEEecCCccC---------C-CC-CHHHHHHHHHHHHHcCCEEEcCC
Confidence 5789999999999999999988 588999999987631 1 11 1222334456677789999986
Q ss_pred eEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCCCCC
Q 010827 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLD 206 (500)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p~~~ 206 (500)
.+++++.+... ..+. .++..+.||.||+|+|.+|...
T Consensus 220 ~V~~i~~~~~~-----------v~v~-~~g~~i~~D~viva~G~~p~~~ 256 (438)
T PRK07251 220 HTTEVKNDGDQ-----------VLVV-TEDETYRFDALLYATGRKPNTE 256 (438)
T ss_pred EEEEEEecCCE-----------EEEE-ECCeEEEcCEEEEeeCCCCCcc
Confidence 78888754321 1222 3456899999999999998754
No 132
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.50 E-value=5.1e-07 Score=92.16 Aligned_cols=35 Identities=29% Similarity=0.405 Sum_probs=32.3
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCC
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (500)
.++|+||||||||+++|..|++ .|++|+|+|+.+.
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~------~G~~v~v~E~~~~ 39 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQ------SGLRVALLAPRAP 39 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHh------CCCeEEEEecCCC
Confidence 4799999999999999999998 6899999999865
No 133
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.49 E-value=1.2e-06 Score=85.82 Aligned_cols=100 Identities=13% Similarity=0.129 Sum_probs=76.1
Q ss_pred EEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCc---c--------CCCCC-----cchHHHHHHHHHhCCcEEEcCc
Q 010827 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVETT---I--------CPTGT-----PGNREAALKVLSARKVQLVLGY 309 (500)
Q Consensus 246 ~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~---~--------~~~~~-----~~~~~~~~~~l~~~gV~i~~~~ 309 (500)
+|+|||+|+.|+++|..|++.+.+ |+++++.+. + .+.++ ..+...+.+.+++.|++++. .
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~ 77 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLK---TLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-E 77 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCC---EEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-E
Confidence 699999999999999999887766 999997641 1 12222 35567777888899999998 7
Q ss_pred eEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccEEeecEEEEecCCCCCCCCC
Q 010827 310 FVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHV 378 (500)
Q Consensus 310 ~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~p~~~~~ 378 (500)
.+..++..+ +.+.+.+. ++.++.+|.+|+|+|..|+.+.+
T Consensus 78 ~v~~v~~~~-----------------------~~~~v~~~------~~~~~~~d~liiAtG~~~~~~~i 117 (300)
T TIGR01292 78 EVIKVDLSD-----------------------RPFKVKTG------DGKEYTAKAVIIATGASARKLGI 117 (300)
T ss_pred EEEEEEecC-----------------------CeeEEEeC------CCCEEEeCEEEECCCCCcccCCC
Confidence 888888754 44555432 45789999999999998875433
No 134
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.49 E-value=8.1e-07 Score=90.12 Aligned_cols=109 Identities=22% Similarity=0.205 Sum_probs=69.9
Q ss_pred eEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcc--hh----------hhc----c-------c-cccC
Q 010827 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPM--LY----------ELL----S-------G-EVDA 136 (500)
Q Consensus 81 ~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~--~~----------~~~----~-------g-~~~~ 136 (500)
||+||||||||+++|.+|++. ..|++|+|||+++...+... +. ... . + ....
T Consensus 1 DviIvGaGpAGlslA~~l~~~----~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~ 76 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADA----RPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRIL 76 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhc----CCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEE
Confidence 799999999999999999442 27999999999775422211 10 000 0 0 0000
Q ss_pred cc----------ccccHHHHhccCCcEEEEeeEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCCC
Q 010827 137 WE----------IAPRFADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPK 204 (500)
Q Consensus 137 ~~----------~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p~ 204 (500)
.. +...+.+.+...++.++...|.+|+..... ..+.+++|..++++.||-|+|..+.
T Consensus 77 ~~~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~-----------~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 77 IDYPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDG-----------VLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred cccceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCce-----------EEEEECCCCEEEeeEEEECCCcccc
Confidence 00 001122333334677777889988776551 3578888889999999999996543
No 135
>PRK06184 hypothetical protein; Provisional
Probab=98.49 E-value=7.1e-07 Score=94.34 Aligned_cols=34 Identities=24% Similarity=0.420 Sum_probs=31.9
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (500)
..+|+||||||+||++|..|++ .|++|+|||+.+
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~------~Gi~v~viE~~~ 36 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELAR------RGVSFRLIEKAP 36 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHH------CCCcEEEEeCCC
Confidence 4799999999999999999999 799999999976
No 136
>PRK07236 hypothetical protein; Provisional
Probab=98.48 E-value=9.4e-07 Score=90.20 Aligned_cols=37 Identities=32% Similarity=0.571 Sum_probs=33.5
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCC
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (500)
++.++|+|||||++||++|..|++ .|++|+|+|+.+.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~------~G~~v~v~E~~~~ 40 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRR------AGWDVDVFERSPT 40 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHh------CCCCEEEEecCCC
Confidence 456899999999999999999999 7999999999863
No 137
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.47 E-value=9.5e-07 Score=90.62 Aligned_cols=103 Identities=27% Similarity=0.427 Sum_probs=78.1
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEE
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFK 156 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~ 156 (500)
..+++++|||||+.|++.|..++++ |.+|||+|+.+++ ++ . ...++...+.+.+++.++.+++
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~L------G~~VTiie~~~~i---------Lp-~-~D~ei~~~~~~~l~~~gv~i~~ 233 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAAL------GSKVTVVERGDRI---------LP-G-EDPEISKELTKQLEKGGVKILL 233 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHc------CCcEEEEecCCCC---------CC-c-CCHHHHHHHHHHHHhCCeEEEc
Confidence 4578999999999999999999994 8899999999873 22 1 1244556677777777898888
Q ss_pred e-eEEEEecCCCCCCCCCceeecCcEEEcCCcc--EEEecEEEEeCCCCCCCCC
Q 010827 157 D-RVKLLCPSDHLGVNGPMACTHGGTVLLESGL--IVEYDWLVLSLGAEPKLDV 207 (500)
Q Consensus 157 ~-~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~--~~~~d~lIlAtG~~p~~~~ 207 (500)
+ .++.+.....- -.+.++++. .+.+|.|++|+|.+|+...
T Consensus 234 ~~~v~~~~~~~~~-----------v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~ 276 (454)
T COG1249 234 NTKVTAVEKKDDG-----------VLVTLEDGEGGTIEADAVLVAIGRKPNTDG 276 (454)
T ss_pred cceEEEEEecCCe-----------EEEEEecCCCCEEEeeEEEEccCCccCCCC
Confidence 7 66777554330 145665555 7889999999999998764
No 138
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.47 E-value=9e-07 Score=91.59 Aligned_cols=99 Identities=22% Similarity=0.360 Sum_probs=73.8
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEEe-
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (500)
.++|+|||||++|+++|..|++ .|.+|+++++.+.+... .. ...+...+.+.+++.+++++.+
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~------~g~~Vtli~~~~~~~~~---------~~-~~~~~~~~~~~l~~~gV~v~~~~ 200 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRE------RGKNVTLIHRSERILNK---------LF-DEEMNQIVEEELKKHEINLRLNE 200 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHh------CCCcEEEEECCcccCcc---------cc-CHHHHHHHHHHHHHcCCEEEeCC
Confidence 4799999999999999999998 68899999998763110 11 1223344667777889999975
Q ss_pred eEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCCCCC
Q 010827 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLD 206 (500)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p~~~ 206 (500)
.+.+++.+.. .+...++..+.||.||+|+|.+|...
T Consensus 201 ~v~~i~~~~~-------------~v~~~~g~~i~~D~vi~a~G~~p~~~ 236 (427)
T TIGR03385 201 EVDSIEGEER-------------VKVFTSGGVYQADMVILATGIKPNSE 236 (427)
T ss_pred EEEEEecCCC-------------EEEEcCCCEEEeCEEEECCCccCCHH
Confidence 8888875433 13445677899999999999988643
No 139
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.46 E-value=6.9e-07 Score=80.14 Aligned_cols=38 Identities=24% Similarity=0.317 Sum_probs=34.2
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCccc
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF 122 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~ 122 (500)
..||+||||||+||.||++|++ +|++|+|||++-.++.
T Consensus 30 esDViIVGaGPsGLtAAyyLAk------~g~kV~i~E~~ls~GG 67 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAK------AGLKVAIFERKLSFGG 67 (262)
T ss_pred hccEEEECcCcchHHHHHHHHh------CCceEEEEEeecccCC
Confidence 3689999999999999999999 7999999999876543
No 140
>PRK10015 oxidoreductase; Provisional
Probab=98.46 E-value=7.3e-07 Score=92.04 Aligned_cols=35 Identities=23% Similarity=0.419 Sum_probs=32.6
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCC
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (500)
.+||+||||||||++||+.|++ .|++|+|||+.+.
T Consensus 5 ~~DViIVGgGpAG~~aA~~LA~------~G~~VlliEr~~~ 39 (429)
T PRK10015 5 KFDAIVVGAGVAGSVAALVMAR------AGLDVLVIERGDS 39 (429)
T ss_pred ccCEEEECcCHHHHHHHHHHHh------CCCeEEEEecCCC
Confidence 4899999999999999999999 7999999999864
No 141
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.45 E-value=8.3e-07 Score=90.90 Aligned_cols=36 Identities=39% Similarity=0.624 Sum_probs=32.7
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCC
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (500)
++.+|+|||||++||++|..|++ .|++|+|+|+.+.
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~------~g~~v~v~Er~~~ 38 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALAR------QGIKVKLLEQAAE 38 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHh------CCCcEEEEeeCcc
Confidence 34799999999999999999999 7999999999864
No 142
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.45 E-value=8.9e-07 Score=99.53 Aligned_cols=50 Identities=22% Similarity=0.217 Sum_probs=42.3
Q ss_pred CCceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHC
Q 010827 393 RGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIN 450 (500)
Q Consensus 393 ~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 450 (500)
.|.|.||...+| +.|++||+|||+... ......+...|+.++.++...+.
T Consensus 361 ~GGi~vd~~~~T-~v~GLfAaGE~a~~~-------~nsl~~a~v~G~~Ag~~a~~~~~ 410 (897)
T PRK13800 361 ASGVWVDEHART-TVPGLYAAGDLACVP-------HNYMIGAFVFGDLAGAHAAGTLA 410 (897)
T ss_pred cceEEecCCCcc-cCCCeEechhccCcc-------hhhhhhHHHhHHHHHHHHHHHHh
Confidence 488999999999 999999999998642 35677889999999999987764
No 143
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.45 E-value=3.4e-06 Score=88.97 Aligned_cols=56 Identities=13% Similarity=0.115 Sum_probs=40.1
Q ss_pred CCceEeCCCcccCCCCCEEEeccccc-ccCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 010827 393 RGQAETDETLCVKGHPRIFALGDSSA-LRDSSGRPLPATAQVAFQQADFAGWNLWAAI 449 (500)
Q Consensus 393 ~g~i~vd~~~~t~~~~~vyaiGD~~~-~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l 449 (500)
.|.|.||...|| +.|++||+|+|+. ......+........+...|+.+++++....
T Consensus 332 ~GGi~vd~~~~t-~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~~ 388 (510)
T PRK08071 332 MGGVKTNLDGET-SIPGLYAIGEVACTGVHGANRLASNSLLEGLVFGKRAAEHILTKA 388 (510)
T ss_pred cCCEEECCCCcc-cCCCeEEcccccccccCCCcccchHHHHHHHHHHHHHHHHHHhhc
Confidence 477999999998 9999999999974 2111111113456678888899999887654
No 144
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.44 E-value=8e-07 Score=90.78 Aligned_cols=35 Identities=31% Similarity=0.512 Sum_probs=32.1
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (500)
..+||+||||||+|+++|..|++ .|++|+|||+.+
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~------~G~~v~liE~~~ 40 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALAR------AGASVALVAPEP 40 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhc------CCCeEEEEeCCC
Confidence 34799999999999999999998 699999999975
No 145
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.43 E-value=2.7e-06 Score=85.32 Aligned_cols=36 Identities=25% Similarity=0.346 Sum_probs=30.9
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcc
Q 010827 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV 121 (500)
Q Consensus 80 ~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~ 121 (500)
++|+||||||+|+++|..|++ .|++|+|||+.+...
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~------~G~~v~i~E~~~~~~ 37 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALAR------AGIDVTIIERRPDPR 37 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHH------TTCEEEEEESSSSCC
T ss_pred ceEEEECCCHHHHHHHHHHHh------cccccccchhccccc
Confidence 589999999999999999999 799999999987643
No 146
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.43 E-value=7.9e-06 Score=82.91 Aligned_cols=51 Identities=20% Similarity=0.208 Sum_probs=42.4
Q ss_pred CCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHCCCCCCCce
Q 010827 399 DETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPFR 458 (500)
Q Consensus 399 d~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~~~p~~ 458 (500)
+.+|+++..|++|.+|-..+. .-...|..||-.|+.|++..+.++++..+.
T Consensus 321 ~~~l~~k~~~~lf~AGQi~G~---------~GY~Eaaa~Gl~agina~~~~~~~~~~~~~ 371 (433)
T TIGR00137 321 TASLHFKDRQTLFFAGQLTGV---------EGYVASTAGGWLAGINAARLALGEPLLTLP 371 (433)
T ss_pred hHHhccCCCCCEEECcccccc---------hHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 357888889999999999985 467789999999999999999988644433
No 147
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.43 E-value=1.4e-06 Score=83.12 Aligned_cols=38 Identities=26% Similarity=0.388 Sum_probs=34.0
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcc
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV 121 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~ 121 (500)
..+||+|||||||||+||+.|++ .|++|+|+||+..+.
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~------~G~~V~vlEk~~~~G 57 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAK------NGLKVCVLERSLAFG 57 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHH------CCCcEEEEecCCCCC
Confidence 35899999999999999999998 689999999987643
No 148
>PRK09126 hypothetical protein; Provisional
Probab=98.43 E-value=8.9e-07 Score=90.56 Aligned_cols=36 Identities=25% Similarity=0.359 Sum_probs=32.7
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCC
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (500)
+.++|+||||||+|+++|..|++ .|++|+|+|+.+.
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~------~G~~v~v~E~~~~ 37 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAG------SGLKVTLIERQPL 37 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHh------CCCcEEEEeCCCc
Confidence 35899999999999999999999 7999999999763
No 149
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.43 E-value=1.3e-06 Score=91.56 Aligned_cols=101 Identities=26% Similarity=0.321 Sum_probs=72.7
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEEe-
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (500)
.++|+|||||++|+++|..|++ .|.+|+|+|+.+.+. +. . ...+...+.+.+++.+++++.+
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~------~g~~Vtli~~~~~il---------~~-~-~~~~~~~l~~~l~~~gI~i~~~~ 242 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLAD------FGVEVTVVEAADRIL---------PT-E-DAELSKEVARLLKKLGVRVVTGA 242 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHH------cCCeEEEEEecCccC---------Cc-C-CHHHHHHHHHHHHhcCCEEEeCc
Confidence 4799999999999999999998 588999999987631 11 1 1223445566777889999987
Q ss_pred eEEEEec--CCCCCCCCCceeecCcEEEcCCc--cEEEecEEEEeCCCCCCCCC
Q 010827 158 RVKLLCP--SDHLGVNGPMACTHGGTVLLESG--LIVEYDWLVLSLGAEPKLDV 207 (500)
Q Consensus 158 ~v~~i~~--~~~~~~~~~~~~~~~~~v~~~~g--~~~~~d~lIlAtG~~p~~~~ 207 (500)
++..++. ..+. ..+...++ ..+.||.||+|+|.+|....
T Consensus 243 ~v~~i~~~~~~~~-----------~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 285 (472)
T PRK05976 243 KVLGLTLKKDGGV-----------LIVAEHNGEEKTLEADKVLVSVGRRPNTEG 285 (472)
T ss_pred EEEEEEEecCCCE-----------EEEEEeCCceEEEEeCEEEEeeCCccCCCC
Confidence 7888864 2221 01223344 36899999999999987643
No 150
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.42 E-value=1.1e-06 Score=89.94 Aligned_cols=35 Identities=29% Similarity=0.451 Sum_probs=32.0
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (500)
+.+||+||||||+|+++|..|++ .|++|+|||+.+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~------~G~~V~liE~~~ 38 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQ------HGFSVAVLEHAA 38 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhc------CCCEEEEEcCCC
Confidence 34899999999999999999998 799999999975
No 151
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.42 E-value=1.1e-06 Score=88.17 Aligned_cols=56 Identities=13% Similarity=0.127 Sum_probs=39.0
Q ss_pred CCceEeCCCcccCCCCCEEEecccccccCCCCC--CCCchHHHHHHHHHHHHHHHHHHHC
Q 010827 393 RGQAETDETLCVKGHPRIFALGDSSALRDSSGR--PLPATAQVAFQQADFAGWNLWAAIN 450 (500)
Q Consensus 393 ~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~--~~~~~~~~A~~~g~~aa~~i~~~l~ 450 (500)
-|.|.||...|| +.|++||||.|+..--- |- -.....-.++--|..+|+.|.+.+.
T Consensus 341 mGGI~vD~~GrT-si~gLYAiGEvA~TGlH-GANRLASNSLLE~vV~g~~aA~~i~~~~~ 398 (518)
T COG0029 341 MGGIAVDANGRT-SIPGLYAIGEVACTGLH-GANRLASNSLLECLVFGKRAAEDIAGRLA 398 (518)
T ss_pred cccEEECCCCcc-cCcccEEeeeecccccc-cchhhhhhhHHHHHHHHHHHHHHhhcccc
Confidence 378999999999 99999999999875110 11 1134455566667777777776543
No 152
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.42 E-value=1.3e-06 Score=91.40 Aligned_cols=101 Identities=24% Similarity=0.359 Sum_probs=74.6
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEEe-
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (500)
.++|+|||||+.|+++|..|++ .|.+|+++++.+.+. + .. ..++...+.+.+++.+++++.+
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~------~g~~Vtli~~~~~~l---------~-~~-~~~~~~~l~~~l~~~gV~i~~~~ 234 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYAS------LGAEVTIVEALPRIL---------P-GE-DKEISKLAERALKKRGIKIKTGA 234 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHH------cCCeEEEEEcCCCcC---------C-cC-CHHHHHHHHHHHHHcCCEEEeCC
Confidence 4789999999999999999988 688999999987631 1 11 1233445666777889999987
Q ss_pred eEEEEecCCCCCCCCCceeecCcEEEcCCc---cEEEecEEEEeCCCCCCCCC
Q 010827 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESG---LIVEYDWLVLSLGAEPKLDV 207 (500)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g---~~~~~d~lIlAtG~~p~~~~ 207 (500)
.+.+++.+.+. ..+...++ ..+.+|.||+|+|.+|....
T Consensus 235 ~V~~i~~~~~~-----------v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~ 276 (462)
T PRK06416 235 KAKKVEQTDDG-----------VTVTLEDGGKEETLEADYVLVAVGRRPNTEN 276 (462)
T ss_pred EEEEEEEeCCE-----------EEEEEEeCCeeEEEEeCEEEEeeCCccCCCC
Confidence 78888754321 13444344 57999999999999987643
No 153
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.40 E-value=1.2e-06 Score=89.74 Aligned_cols=37 Identities=30% Similarity=0.447 Sum_probs=31.4
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCC
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQS 117 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~ 117 (500)
.+++|+||||||||+++|..|++.. .+|++|+|||+.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~---~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLS---HGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcc---cCCCEEEEEeCC
Confidence 4589999999999999999999820 129999999994
No 154
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.39 E-value=1.2e-06 Score=89.27 Aligned_cols=33 Identities=33% Similarity=0.550 Sum_probs=30.8
Q ss_pred eEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCC
Q 010827 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (500)
Q Consensus 81 ~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (500)
||+||||||||+++|..|++ .|++|+|||+.+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~------~G~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALAR------SGLKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhc------CCCEEEEEeCCCc
Confidence 69999999999999999999 7999999999864
No 155
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.39 E-value=5.6e-06 Score=78.93 Aligned_cols=180 Identities=11% Similarity=0.028 Sum_probs=105.6
Q ss_pred cEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCC-----------------------C---------------
Q 010827 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPT-----------------------G--------------- 286 (500)
Q Consensus 245 k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~-----------------------~--------------- 286 (500)
-+|+|||+|++|+-+|..|++.+.+ |.++++...+... +
T Consensus 22 ~DVvIVGgGpAGL~aA~~la~~G~~---V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~ 98 (254)
T TIGR00292 22 SDVIIVGAGPSGLTAAYYLAKNGLK---VCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVAD 98 (254)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEee
Confidence 4899999999999999999988766 9999987654210 0
Q ss_pred CcchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccc-c--CCCccEEeec
Q 010827 287 TPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAI-K--GLESQIFEAD 363 (500)
Q Consensus 287 ~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~-~--~~~~~~l~~D 363 (500)
..++...+.+.+.+.|++++.++.+.++..+++.. .-.++.+...... . ..+..++.++
T Consensus 99 ~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~------------------~V~GVv~~~~~v~~~g~~~d~~~i~Ak 160 (254)
T TIGR00292 99 SAEFISTLASKALQAGAKIFNGTSVEDLITRDDTV------------------GVAGVVINWSAIELAGLHVDPLTQRSR 160 (254)
T ss_pred HHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCC------------------ceEEEEeCCccccccCCCCCCEEEEcC
Confidence 01233445566678899999999999987644200 0023333211000 0 0135689999
Q ss_pred EEEEecCCCCC-CCCCCCCC-Ccc--------CCCCCCCCCceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHH
Q 010827 364 LVLWTVGSKPL-LPHVEPPN-NRL--------HDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQV 433 (500)
Q Consensus 364 ~vi~a~G~~p~-~~~~~~~~-~~~--------~~~~~~~~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~ 433 (500)
.||.|+|.... ..++..-. ... .++..+..-...|+.+-+ -+|++|++|-+++..+ |.|+..-+.-
T Consensus 161 ~VVdATG~~a~v~~~l~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~--~~~g~~~~gm~~~~~~--~~~rmgp~fg 236 (254)
T TIGR00292 161 VVVDATGHDAEIVAVCAKKIVLEDQVPKLGGEKSMWAEVAEVAIHENTRE--VVPNLYVAGMAVAAVH--GLPRMGPIFG 236 (254)
T ss_pred EEEEeecCCchHHHHHHHHcCcccCCcccCCchhhhhhhhHHHHHhccCc--ccCCEEEechhhhhhc--CCCCcCchHH
Confidence 99999997643 11211100 000 000001111122223333 3899999999987533 3333323333
Q ss_pred HH-HHHHHHHHHHHHHH
Q 010827 434 AF-QQADFAGWNLWAAI 449 (500)
Q Consensus 434 A~-~~g~~aa~~i~~~l 449 (500)
++ ..|+.+|+.|...+
T Consensus 237 ~m~~sg~~~a~~~~~~~ 253 (254)
T TIGR00292 237 GMLLSGKHVAEQILEKL 253 (254)
T ss_pred HHHHhhHHHHHHHHHHh
Confidence 44 79999999998876
No 156
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.39 E-value=6.2e-06 Score=87.65 Aligned_cols=57 Identities=12% Similarity=0.061 Sum_probs=41.9
Q ss_pred CCceEeCCCcccCCCCCEEEeccccc-ccCCCCCCCCchHHHHHHHHHHHHHHHHHHHC
Q 010827 393 RGQAETDETLCVKGHPRIFALGDSSA-LRDSSGRPLPATAQVAFQQADFAGWNLWAAIN 450 (500)
Q Consensus 393 ~g~i~vd~~~~t~~~~~vyaiGD~~~-~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 450 (500)
.|.|.||...|| +.|++||+|+|+. ......+.-......+.-.|+.|++++.....
T Consensus 353 ~GGi~vd~~~~t-~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~~~~ 410 (536)
T PRK09077 353 CGGVMVDLHGRT-DLDGLYAIGEVSYTGLHGANRMASNSLLECLVYGRSAAEDILSRLP 410 (536)
T ss_pred cCCeeECCCCcc-ccCCEEecccccccccCCCccchhhhHHHHHHHHHHHHHHHHHhhc
Confidence 477999999998 9999999999974 21111111134667888999999999987653
No 157
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.38 E-value=1.7e-06 Score=90.47 Aligned_cols=100 Identities=19% Similarity=0.295 Sum_probs=73.2
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEEe-
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (500)
.++|+|||||++|+++|..|++ .|.+|+|+|+.+.+.. .. ...+...+.+.+++.+++++.+
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~------~g~~Vtli~~~~~~l~----------~~-~~~~~~~~~~~l~~~gi~i~~~~ 232 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFAS------LGSKVTVIEMLDRILP----------GE-DAEVSKVVAKALKKKGVKILTNT 232 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHH------cCCcEEEEEcCCCCCC----------CC-CHHHHHHHHHHHHHcCCEEEeCC
Confidence 4799999999999999999998 5889999999876311 11 1223334556677789999986
Q ss_pred eEEEEecCCCCCCCCCceeecCcEEEcCCc--cEEEecEEEEeCCCCCCCC
Q 010827 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESG--LIVEYDWLVLSLGAEPKLD 206 (500)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g--~~~~~d~lIlAtG~~p~~~ 206 (500)
.+.+++..... ..+...++ ..+.+|.||+|+|..|...
T Consensus 233 ~v~~i~~~~~~-----------v~v~~~~g~~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 233 KVTAVEKNDDQ-----------VVYENKGGETETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred EEEEEEEeCCE-----------EEEEEeCCcEEEEEeCEEEEecCCcccCC
Confidence 78888654331 12343445 4799999999999998765
No 158
>PRK07190 hypothetical protein; Provisional
Probab=98.38 E-value=1.7e-06 Score=90.66 Aligned_cols=34 Identities=26% Similarity=0.330 Sum_probs=31.7
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (500)
.++|+||||||+||.+|..|++ .|++|+|||+.+
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar------~Gi~V~llEr~~ 38 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQL------CGLNTVIVDKSD 38 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHH------cCCCEEEEeCCC
Confidence 4799999999999999999998 699999999986
No 159
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.38 E-value=1.9e-06 Score=89.43 Aligned_cols=96 Identities=16% Similarity=0.297 Sum_probs=73.6
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEEe-
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (500)
.++|+|||||+.|+++|..|++ .|.+|+|+++.+.+. ... ..++...+.+.+++.+++++.+
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~------~g~~Vtli~~~~~l~----------~~~-d~~~~~~l~~~l~~~gI~i~~~~ 210 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYE------RGLHPTLIHRSDKIN----------KLM-DADMNQPILDELDKREIPYRLNE 210 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHh------CCCcEEEEecccccc----------hhc-CHHHHHHHHHHHHhcCCEEEECC
Confidence 4789999999999999999988 588999999987631 111 1233445667777889999875
Q ss_pred eEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCCCCC
Q 010827 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLD 206 (500)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p~~~ 206 (500)
.+.+++.. .+.++++..+.+|.|++|+|.+|+..
T Consensus 211 ~v~~i~~~---------------~v~~~~g~~~~~D~vl~a~G~~pn~~ 244 (438)
T PRK13512 211 EIDAINGN---------------EVTFKSGKVEHYDMIIEGVGTHPNSK 244 (438)
T ss_pred eEEEEeCC---------------EEEECCCCEEEeCEEEECcCCCcChH
Confidence 78888531 35566677899999999999988753
No 160
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.37 E-value=1.5e-06 Score=93.17 Aligned_cols=38 Identities=21% Similarity=0.350 Sum_probs=33.9
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcc
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV 121 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~ 121 (500)
...||+|||+|.+|+++|..+++ .|++|+||||++.+.
T Consensus 11 ~~~dvvvvG~G~aG~~aa~~~~~------~g~~v~~iek~~~~g 48 (581)
T PRK06134 11 LECDVLVIGSGAAGLSAAVTAAW------HGLKVIVVEKDPVFG 48 (581)
T ss_pred CccCEEEECcCHHHHHHHHHHHH------CCCeEEEEecCCCCC
Confidence 35899999999999999999998 689999999987543
No 161
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.37 E-value=2.3e-06 Score=88.64 Aligned_cols=36 Identities=25% Similarity=0.461 Sum_probs=32.9
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (500)
.+++||+||||||||++||..|++ .|++|+|+|+..
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA~------~G~~VlllEr~~ 72 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLAK------GGIETFLIERKL 72 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHh------CCCcEEEEecCC
Confidence 445899999999999999999999 799999999975
No 162
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.37 E-value=1.6e-06 Score=88.55 Aligned_cols=33 Identities=30% Similarity=0.433 Sum_probs=31.3
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCC
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQS 117 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~ 117 (500)
.++|+||||||+||++|..|++ .|++|+|||+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~------~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALAR------AGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHh------CCCcEEEEccC
Confidence 4789999999999999999999 79999999998
No 163
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.37 E-value=2.2e-06 Score=89.47 Aligned_cols=99 Identities=23% Similarity=0.363 Sum_probs=72.0
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEEe-
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (500)
+++++|||||++|+++|..|++ .|.+|+|+++.+.+. +. . ..++...+.+.+++.+++++.+
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~------~g~~Vtli~~~~~ll---------~~-~-d~e~~~~l~~~L~~~GI~i~~~~ 232 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSR------LGTKVTIVEMAPQLL---------PG-E-DEDIAHILREKLENDGVKIFTGA 232 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHH------cCCeEEEEecCCCcC---------cc-c-cHHHHHHHHHHHHHCCCEEEECC
Confidence 4789999999999999999988 588999999987631 11 1 1233445566777889999986
Q ss_pred eEEEEecCCCCCCCCCceeecCcEEEcCCc--cEEEecEEEEeCCCCCCCC
Q 010827 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESG--LIVEYDWLVLSLGAEPKLD 206 (500)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g--~~~~~d~lIlAtG~~p~~~ 206 (500)
++.+++.+... ..+.. ++ ..+.||.||+|+|.+|+..
T Consensus 233 ~V~~i~~~~~~-----------v~~~~-~g~~~~i~~D~vivA~G~~p~~~ 271 (458)
T PRK06912 233 ALKGLNSYKKQ-----------ALFEY-EGSIQEVNAEFVLVSVGRKPRVQ 271 (458)
T ss_pred EEEEEEEcCCE-----------EEEEE-CCceEEEEeCEEEEecCCccCCC
Confidence 78888654321 12222 23 3689999999999988754
No 164
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.37 E-value=1.5e-06 Score=88.99 Aligned_cols=34 Identities=29% Similarity=0.462 Sum_probs=31.2
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCC
Q 010827 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (500)
Q Consensus 80 ~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (500)
+||+||||||||++||..|++ .|++|+|+|+...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~------~G~~V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLAS------AGIQTFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHh------CCCcEEEEecCCC
Confidence 489999999999999999999 7999999999753
No 165
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.37 E-value=2.3e-06 Score=84.02 Aligned_cols=96 Identities=19% Similarity=0.223 Sum_probs=77.0
Q ss_pred cEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCCC-----------------------C--------------
Q 010827 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTG-----------------------T-------------- 287 (500)
Q Consensus 245 k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~~-----------------------~-------------- 287 (500)
..|+|||+|+.|+-+|..+++.+.+ |++++..+.+...+ +
T Consensus 4 ~dviIIGgGpAGlMaA~~aa~~G~~---V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft 80 (408)
T COG2081 4 FDVIIIGGGPAGLMAAISAAKAGRR---VLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFT 80 (408)
T ss_pred ceEEEECCCHHHHHHHHHHhhcCCE---EEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCC
Confidence 4899999999999999999998887 99998866554210 0
Q ss_pred ------------------------------cchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCccccccc
Q 010827 288 ------------------------------PGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAA 337 (500)
Q Consensus 288 ------------------------------~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~ 337 (500)
..+.+.+..++++.||+++++++|.+++.++
T Consensus 81 ~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~------------------- 141 (408)
T COG2081 81 PEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD------------------- 141 (408)
T ss_pred HHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC-------------------
Confidence 2344566788999999999999999999865
Q ss_pred ccCCcceeEeecccccCCCccEEeecEEEEecCCC
Q 010827 338 DKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK 372 (500)
Q Consensus 338 ~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~ 372 (500)
..+.+.+. +++++.||.+|+|+|-.
T Consensus 142 ----~~f~l~t~------~g~~i~~d~lilAtGG~ 166 (408)
T COG2081 142 ----SGFRLDTS------SGETVKCDSLILATGGK 166 (408)
T ss_pred ----ceEEEEcC------CCCEEEccEEEEecCCc
Confidence 56777643 66699999999999944
No 166
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.37 E-value=1e-05 Score=85.67 Aligned_cols=37 Identities=32% Similarity=0.530 Sum_probs=33.5
Q ss_pred EEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCc
Q 010827 82 ICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP 124 (500)
Q Consensus 82 VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~ 124 (500)
|||||||.+||+||..|++ .|++|+|+|+++..+...
T Consensus 1 vvVIGaG~~GL~aA~~La~------~G~~V~VlE~~~~~GG~~ 37 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAA------AGIPVTVVEQRDKPGGRA 37 (502)
T ss_pred CEEECcCHHHHHHHHHHHh------CCCcEEEEECCCCCcCce
Confidence 6999999999999999999 799999999999866544
No 167
>PRK08013 oxidoreductase; Provisional
Probab=98.37 E-value=1.7e-06 Score=88.66 Aligned_cols=35 Identities=29% Similarity=0.409 Sum_probs=32.2
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCC
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (500)
.+||+||||||+|+++|..|++ .|++|+|+|+.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~------~G~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQG------SGLRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhh------CCCEEEEEeCCCC
Confidence 4799999999999999999998 7999999999764
No 168
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.37 E-value=1.4e-06 Score=88.78 Aligned_cols=33 Identities=30% Similarity=0.512 Sum_probs=30.6
Q ss_pred eEEEECCcHHHHHHHHHhhhcccCCCCC-CeEEEEcCCCC
Q 010827 81 RICILGGGFGGLYTALRLESLVWQDDKK-PQVLLVDQSER 119 (500)
Q Consensus 81 ~VvIIGgG~AGl~aA~~L~~~~~~~~~g-~~V~lie~~~~ 119 (500)
||+||||||+|+++|..|++ .| ++|+|+|+.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~------~G~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSR------LGKIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhc------CCCceEEEEeCCCc
Confidence 69999999999999999999 78 99999999763
No 169
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.36 E-value=1.7e-06 Score=88.13 Aligned_cols=34 Identities=32% Similarity=0.520 Sum_probs=31.3
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (500)
.+||+||||||+|+++|..|++ .|++|+|||+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~------~G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAK------QGRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHh------CCCcEEEEcCCC
Confidence 3799999999999999999998 799999999864
No 170
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.35 E-value=2.8e-06 Score=88.85 Aligned_cols=100 Identities=23% Similarity=0.258 Sum_probs=75.0
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEEe-
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (500)
+++|+|||||+.|+++|..|++ .|.+|+|+++.+.+. ... ..++...+.+.+++.+++++.+
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~------~g~~Vtli~~~~~~l----------~~~-d~~~~~~l~~~l~~~gI~v~~~~ 237 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAA------LGVKVTLINTRDRLL----------SFL-DDEISDALSYHLRDSGVTIRHNE 237 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHH------cCCeEEEEecCCCcC----------CcC-CHHHHHHHHHHHHHcCCEEEECC
Confidence 5799999999999999999998 588999999987631 111 1223445666677789999986
Q ss_pred eEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCCCCC
Q 010827 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLD 206 (500)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p~~~ 206 (500)
.++.++..... ..+.+.++..+.+|.||+|+|.+|+..
T Consensus 238 ~v~~i~~~~~~-----------~~v~~~~g~~i~~D~vi~a~G~~p~~~ 275 (461)
T PRK05249 238 EVEKVEGGDDG-----------VIVHLKSGKKIKADCLLYANGRTGNTD 275 (461)
T ss_pred EEEEEEEeCCe-----------EEEEECCCCEEEeCEEEEeecCCcccc
Confidence 78888643221 135556677899999999999998754
No 171
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.34 E-value=2e-06 Score=88.40 Aligned_cols=33 Identities=24% Similarity=0.487 Sum_probs=30.9
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCC
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQS 117 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~ 117 (500)
.+||+||||||+|+++|..|++ .|++|+|+|+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~------~G~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKE------SDLRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHh------CCCEEEEEcCC
Confidence 4799999999999999999998 79999999985
No 172
>PRK05868 hypothetical protein; Validated
Probab=98.34 E-value=3.2e-06 Score=85.76 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=32.0
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCC
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (500)
+++|+|||||++|+++|..|++ +|++|+|||+.+.
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~------~G~~v~viE~~~~ 35 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGR------HGYSVTMVERHPG 35 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHh------CCCCEEEEcCCCC
Confidence 3689999999999999999998 7999999999863
No 173
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.32 E-value=2.4e-06 Score=87.44 Aligned_cols=36 Identities=25% Similarity=0.459 Sum_probs=31.7
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (500)
++||+|||||.+|+++|++|++. .+|++|+|+|+.+
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~----~~g~~V~llE~~~ 37 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQER----YPGARIAVLEKES 37 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHh----CCCCeEEEEeCCC
Confidence 37999999999999999999982 1389999999975
No 174
>PRK06116 glutathione reductase; Validated
Probab=98.32 E-value=3.4e-06 Score=87.86 Aligned_cols=102 Identities=19% Similarity=0.268 Sum_probs=75.6
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEEe-
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (500)
+++|+|||+|+.|+++|..|++ .|.+|+++++.+.+. . .. ..++...+.+.+++.+++++.+
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~------~g~~Vtlv~~~~~~l---------~-~~-~~~~~~~l~~~L~~~GV~i~~~~ 229 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNG------LGSETHLFVRGDAPL---------R-GF-DPDIRETLVEEMEKKGIRLHTNA 229 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHH------cCCeEEEEecCCCCc---------c-cc-CHHHHHHHHHHHHHCCcEEECCC
Confidence 5799999999999999999988 588999999987531 0 11 1233445566777889999986
Q ss_pred eEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCCCCCC
Q 010827 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDV 207 (500)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p~~~~ 207 (500)
.+.+++.+.+- ...+.+.++..+.+|.||+|+|.+|....
T Consensus 230 ~V~~i~~~~~g----------~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~ 269 (450)
T PRK06116 230 VPKAVEKNADG----------SLTLTLEDGETLTVDCLIWAIGREPNTDG 269 (450)
T ss_pred EEEEEEEcCCc----------eEEEEEcCCcEEEeCEEEEeeCCCcCCCC
Confidence 78888654220 01456667778999999999999887653
No 175
>PRK07233 hypothetical protein; Provisional
Probab=98.32 E-value=4.3e-06 Score=86.63 Aligned_cols=38 Identities=29% Similarity=0.524 Sum_probs=34.3
Q ss_pred eEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCc
Q 010827 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP 124 (500)
Q Consensus 81 ~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~ 124 (500)
+|+|||||++||+||..|++ .|++|+|+|+++.++...
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~------~G~~v~vlE~~~~~GG~~ 38 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAK------RGHEVTVFEADDQLGGLA 38 (434)
T ss_pred CEEEECCCHHHHHHHHHHHH------CCCcEEEEEeCCCCCCce
Confidence 69999999999999999999 789999999999866543
No 176
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.32 E-value=2.4e-06 Score=86.78 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=31.6
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (500)
.+||+|||||++|+++|++|++ +|++|+|+|++.
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~------~g~~V~lie~~~ 36 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLAR------RGLRVLGLDRFM 36 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHH------CCCeEEEEeccc
Confidence 4799999999999999999999 689999999974
No 177
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.32 E-value=2.3e-05 Score=75.11 Aligned_cols=41 Identities=24% Similarity=0.417 Sum_probs=36.0
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcc
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPM 125 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~ 125 (500)
.+.+|+|||+|.+||+||..|.+ .|+|||||.+.+++.+..
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~-------rhdVTLfEA~~rlGGha~ 47 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSR-------RHDVTLFEADRRLGGHAN 47 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhc-------ccceEEEeccccccCccc
Confidence 45799999999999999999987 589999999998777653
No 178
>PRK07045 putative monooxygenase; Reviewed
Probab=98.32 E-value=2.8e-06 Score=86.82 Aligned_cols=36 Identities=25% Similarity=0.384 Sum_probs=32.8
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCC
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (500)
.+++|+||||||+|+++|..|++ .|++|+|+|+.+.
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~------~G~~v~v~E~~~~ 39 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGA------RGHSVTVVERAAR 39 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHh------cCCcEEEEeCCCc
Confidence 44799999999999999999999 7999999999874
No 179
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.31 E-value=3e-06 Score=88.23 Aligned_cols=99 Identities=23% Similarity=0.311 Sum_probs=71.5
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEEe-
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (500)
.++|+|||||+.|+++|..|++ .|.+|+++++.+.+.. ... ...+...+.+.+++.+++++.+
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~------~g~~Vtli~~~~~~l~---------~~~-~~~~~~~l~~~l~~~gI~v~~~~ 212 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKH------LGKNVRIIQLEDRILP---------DSF-DKEITDVMEEELRENGVELHLNE 212 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHh------cCCcEEEEeCCcccCc---------hhc-CHHHHHHHHHHHHHCCCEEEcCC
Confidence 4789999999999999999988 5789999998875311 011 1233445666777889999876
Q ss_pred eEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCCCC
Q 010827 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKL 205 (500)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p~~ 205 (500)
.+.+++.+.+. ..+..+ +..+.+|.||+|+|..|..
T Consensus 213 ~v~~i~~~~~~-----------~~v~~~-~~~i~~d~vi~a~G~~p~~ 248 (444)
T PRK09564 213 FVKSLIGEDKV-----------EGVVTD-KGEYEADVVIVATGVKPNT 248 (444)
T ss_pred EEEEEecCCcE-----------EEEEeC-CCEEEcCEEEECcCCCcCH
Confidence 78888654321 123333 3479999999999988764
No 180
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.31 E-value=3.3e-06 Score=87.79 Aligned_cols=100 Identities=21% Similarity=0.267 Sum_probs=74.3
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEEe-
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (500)
.++++|||+|+.|+++|..+++ .|.+|+++++.+.+. .+ . ..++...+.+.+++.+++++.+
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~------~G~~Vtli~~~~~~l---------~~-~-d~~~~~~l~~~l~~~gV~i~~~~ 228 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRG------LGVQVTLIYRGELIL---------RG-F-DDDMRALLARNMEGRGIRIHPQT 228 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHH------cCCeEEEEEeCCCCC---------cc-c-CHHHHHHHHHHHHHCCCEEEeCC
Confidence 5789999999999999999988 578999999987631 11 1 1223344566677789999986
Q ss_pred eEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCCCCC
Q 010827 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLD 206 (500)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p~~~ 206 (500)
.+.+++..... ..+.+.++..+.+|.||+|+|..|+..
T Consensus 229 ~v~~i~~~~~~-----------~~v~~~~g~~i~~D~viva~G~~pn~~ 266 (446)
T TIGR01424 229 SLTSITKTDDG-----------LKVTLSHGEEIVADVVLFATGRSPNTK 266 (446)
T ss_pred EEEEEEEcCCe-----------EEEEEcCCcEeecCEEEEeeCCCcCCC
Confidence 78888643220 145555677899999999999988754
No 181
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.30 E-value=2.9e-06 Score=88.59 Aligned_cols=38 Identities=32% Similarity=0.702 Sum_probs=32.5
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (500)
....||+|||||.+|+++|++|++. .+|.+|+|+|++.
T Consensus 22 ~~~~DVvIIGgGi~Gls~A~~La~~----~~G~~V~vlE~~~ 59 (460)
T TIGR03329 22 DTQADVCIVGGGFTGLWTAIMIKQQ----RPALDVLVLEADL 59 (460)
T ss_pred CceeCEEEECCCHHHHHHHHHHHHh----CCCCeEEEEeCCc
Confidence 3457999999999999999999982 1489999999875
No 182
>PRK06753 hypothetical protein; Provisional
Probab=98.30 E-value=2.9e-06 Score=86.19 Aligned_cols=34 Identities=32% Similarity=0.587 Sum_probs=31.4
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCC
Q 010827 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (500)
Q Consensus 80 ~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (500)
.+|+||||||||+++|..|++ .|++|+|+|+.+.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~------~g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQE------QGHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHh------CCCcEEEEecCCc
Confidence 379999999999999999999 7999999999873
No 183
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.29 E-value=4e-06 Score=87.95 Aligned_cols=101 Identities=19% Similarity=0.304 Sum_probs=72.7
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEEe-
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (500)
+++|+|||+|+.|+++|..|++ .|.+|+|+++.+.+. . ..+ .++...+.+.+++.+++++.+
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~------~g~~Vtli~~~~~~l---------~-~~d-~~~~~~~~~~l~~~gi~i~~~~ 245 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRR------LGAEVTILEALPAFL---------A-AAD-EQVAKEAAKAFTKQGLDIHLGV 245 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHH------cCCeEEEEeCCCccC---------C-cCC-HHHHHHHHHHHHHcCcEEEeCc
Confidence 4799999999999999999988 578999999987631 1 111 233344556667789999986
Q ss_pred eEEEEecCCCCCCCCCceeecCcEEEcCC--c--cEEEecEEEEeCCCCCCCCC
Q 010827 158 RVKLLCPSDHLGVNGPMACTHGGTVLLES--G--LIVEYDWLVLSLGAEPKLDV 207 (500)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~--g--~~~~~d~lIlAtG~~p~~~~ 207 (500)
.+.+++..... ..+...+ + ..+.+|.|++|+|.+|....
T Consensus 246 ~v~~i~~~~~~-----------v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~ 288 (475)
T PRK06327 246 KIGEIKTGGKG-----------VSVAYTDADGEAQTLEVDKLIVSIGRVPNTDG 288 (475)
T ss_pred EEEEEEEcCCE-----------EEEEEEeCCCceeEEEcCEEEEccCCccCCCC
Confidence 88888754321 1233222 2 47999999999999987653
No 184
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.29 E-value=3.3e-06 Score=93.58 Aligned_cols=100 Identities=18% Similarity=0.337 Sum_probs=74.4
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEEe-
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (500)
.++++|||||+.|+++|..|++ .|.+|+|+++.+.+. ...++ ......+.+.+++.+|+++.+
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~------~G~~Vtvv~~~~~ll---------~~~ld-~~~~~~l~~~l~~~GV~v~~~~ 203 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQN------LGMDVSVIHHAPGLM---------AKQLD-QTAGRLLQRELEQKGLTFLLEK 203 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHh------cCCeEEEEccCCchh---------hhhcC-HHHHHHHHHHHHHcCCEEEeCC
Confidence 4789999999999999999998 688999999887521 11111 122344566777889999987
Q ss_pred eEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCCCC
Q 010827 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKL 205 (500)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p~~ 205 (500)
.++++..+... ..+.+.++..+.+|.||+|+|.+|+.
T Consensus 204 ~v~~i~~~~~~-----------~~v~~~dG~~i~~D~Vi~a~G~~Pn~ 240 (785)
T TIGR02374 204 DTVEIVGATKA-----------DRIRFKDGSSLEADLIVMAAGIRPND 240 (785)
T ss_pred ceEEEEcCCce-----------EEEEECCCCEEEcCEEEECCCCCcCc
Confidence 67777543321 24667788899999999999998864
No 185
>PRK07588 hypothetical protein; Provisional
Probab=98.28 E-value=3.1e-06 Score=86.54 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=31.3
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCC
Q 010827 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (500)
Q Consensus 80 ~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (500)
.+|+|||||++|+++|..|++ .|++|+|+|+.+.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~------~G~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRR------YGHEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHH------CCCceEEEeCCCC
Confidence 479999999999999999998 7999999999764
No 186
>PRK06370 mercuric reductase; Validated
Probab=98.28 E-value=4.8e-06 Score=87.08 Aligned_cols=100 Identities=17% Similarity=0.259 Sum_probs=73.1
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEEe-
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (500)
.++|+|||+|+.|+++|..|++ .|.+|+|+++.+.+.. .. ..++...+.+.+++.+++++.+
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~------~G~~Vtli~~~~~~l~----------~~-~~~~~~~l~~~l~~~GV~i~~~~ 233 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRR------FGSEVTVIERGPRLLP----------RE-DEDVAAAVREILEREGIDVRLNA 233 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHH------cCCeEEEEEcCCCCCc----------cc-CHHHHHHHHHHHHhCCCEEEeCC
Confidence 5799999999999999999998 5889999999876321 11 1223345667777889999986
Q ss_pred eEEEEecCCCCCCCCCceeecCcEEEc---CCccEEEecEEEEeCCCCCCCC
Q 010827 158 RVKLLCPSDHLGVNGPMACTHGGTVLL---ESGLIVEYDWLVLSLGAEPKLD 206 (500)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~---~~g~~~~~d~lIlAtG~~p~~~ 206 (500)
.+..++..... ..+.. .++..+.+|.||+|+|.+|+..
T Consensus 234 ~V~~i~~~~~~-----------~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~ 274 (463)
T PRK06370 234 ECIRVERDGDG-----------IAVGLDCNGGAPEITGSHILVAVGRVPNTD 274 (463)
T ss_pred EEEEEEEcCCE-----------EEEEEEeCCCceEEEeCEEEECcCCCcCCC
Confidence 88888754321 01221 2345799999999999998754
No 187
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.28 E-value=2.9e-06 Score=86.33 Aligned_cols=33 Identities=24% Similarity=0.480 Sum_probs=30.6
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC
Q 010827 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (500)
Q Consensus 80 ~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (500)
+||+|||||.+|+++|++|++ +|++|+|+|+.+
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~------~g~~V~l~e~~~ 33 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAK------HGKKTLLLEQFD 33 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHH------CCCeEEEEeccC
Confidence 489999999999999999998 789999999964
No 188
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.28 E-value=4.1e-06 Score=87.14 Aligned_cols=101 Identities=20% Similarity=0.240 Sum_probs=74.0
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEEe-
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (500)
+++|+|||||+.|+++|..|++ .|.+|+|+++.+.+. ... ..++...+.+.+++.+++++.+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~------~g~~Vtli~~~~~il----------~~~-d~~~~~~~~~~l~~~gI~i~~~~ 228 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHG------LGSETHLVIRHERVL----------RSF-DSMISETITEEYEKEGINVHKLS 228 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHH------cCCcEEEEecCCCCC----------ccc-CHHHHHHHHHHHHHcCCEEEcCC
Confidence 5799999999999999999998 588999999987621 111 1223445667777889999986
Q ss_pred eEEEEecCCCCCCCCCceeecCcEEEcCCc-cEEEecEEEEeCCCCCCCC
Q 010827 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESG-LIVEYDWLVLSLGAEPKLD 206 (500)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~d~lIlAtG~~p~~~ 206 (500)
.++++.....- ...+.++++ ..+.+|.||+|+|.+|+..
T Consensus 229 ~v~~i~~~~~~----------~~~v~~~~g~~~i~~D~vi~a~G~~pn~~ 268 (450)
T TIGR01421 229 KPVKVEKTVEG----------KLVIHFEDGKSIDDVDELIWAIGRKPNTK 268 (450)
T ss_pred EEEEEEEeCCc----------eEEEEECCCcEEEEcCEEEEeeCCCcCcc
Confidence 78888643210 013455556 5799999999999998764
No 189
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.27 E-value=4.5e-06 Score=87.21 Aligned_cols=56 Identities=11% Similarity=0.105 Sum_probs=40.6
Q ss_pred CCCceEeCCCcccCCCCCEEEeccccc-ccCCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 010827 392 ARGQAETDETLCVKGHPRIFALGDSSA-LRDSSGRPLPATAQVAFQQADFAGWNLWAA 448 (500)
Q Consensus 392 ~~g~i~vd~~~~t~~~~~vyaiGD~~~-~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 448 (500)
-.|.|.||...|| ..|++||+|+|+. ......+........++..|+.+++++...
T Consensus 309 t~GGi~vd~~~~t-~IpGLyAaGE~a~~G~hG~nrl~gnsl~~~~v~G~~ag~~aa~~ 365 (466)
T PRK08401 309 TIGGISVDTFYRT-GIKNLYAIGEAASNGFHGANRLASNSLLECIVSGLEVARTISRE 365 (466)
T ss_pred cCCCEEECCCCcc-cCCCEEECccccccCCCCCCcchhHHHHHHHHHHHHHHHHHhhh
Confidence 3578999999998 9999999999974 222111222345667888899999998754
No 190
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.26 E-value=5.2e-06 Score=86.80 Aligned_cols=101 Identities=21% Similarity=0.273 Sum_probs=75.0
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEEe-
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (500)
+++++|||+|+.|+++|..|++ .|.+|+++++.+.+. ...+ ..+...+.+.+++.+++++.+
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~------~g~~Vtli~~~~~~l----------~~~d-~~~~~~l~~~L~~~gV~i~~~~ 239 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTE------LGVKVTLVSSRDRVL----------PGED-ADAAEVLEEVFARRGMTVLKRS 239 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHH------cCCeEEEEEcCCcCC----------CCCC-HHHHHHHHHHHHHCCcEEEcCC
Confidence 4689999999999999999988 588999999987621 1111 223345667777889999986
Q ss_pred eEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCCCCCC
Q 010827 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDV 207 (500)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p~~~~ 207 (500)
++.+++..... ..+.+.++..+.+|.|++|+|.+|+...
T Consensus 240 ~v~~v~~~~~~-----------~~v~~~~g~~l~~D~vl~a~G~~pn~~~ 278 (466)
T PRK07845 240 RAESVERTGDG-----------VVVTLTDGRTVEGSHALMAVGSVPNTAG 278 (466)
T ss_pred EEEEEEEeCCE-----------EEEEECCCcEEEecEEEEeecCCcCCCC
Confidence 78888643221 1355566778999999999999987653
No 191
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.26 E-value=1.2e-05 Score=81.55 Aligned_cols=45 Identities=22% Similarity=0.160 Sum_probs=38.2
Q ss_pred CCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHCCCC
Q 010827 400 ETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRP 453 (500)
Q Consensus 400 ~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~ 453 (500)
.+|+|+..+++|.+|-..+. .-...|..||-.|+-|......+++
T Consensus 352 ~tLEtK~I~GLf~AGQINGT---------tGYEEAAaQGliAGiNAal~~~~~~ 396 (621)
T COG0445 352 PTLETKKIKGLFFAGQINGT---------TGYEEAAAQGLIAGINAALKVQGKE 396 (621)
T ss_pred cchhhceecceEEcccccCC---------chhHHHHhhhHHHHHHHHHHhcCCC
Confidence 56788889999999999885 3566899999999999998888764
No 192
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.26 E-value=4.9e-06 Score=87.02 Aligned_cols=101 Identities=23% Similarity=0.326 Sum_probs=73.0
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEEe-
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (500)
.++++|||+|+.|+++|..|++ .|.+|+++++.+.+. + .. ..++...+.+.+++.+++++.+
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~------~g~~Vtli~~~~~~l---------~-~~-d~~~~~~l~~~l~~~gV~i~~~~ 228 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFAR------LGSEVTILQRSDRLL---------P-RE-EPEISAAVEEALAEEGIEVVTSA 228 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHH------cCCcEEEEEcCCcCC---------C-cc-CHHHHHHHHHHHHHcCCEEEcCc
Confidence 4799999999999999999998 588999999987632 1 11 1223345666777889999987
Q ss_pred eEEEEecCCCCCCCCCceeecCcEEEcC---CccEEEecEEEEeCCCCCCCCC
Q 010827 158 RVKLLCPSDHLGVNGPMACTHGGTVLLE---SGLIVEYDWLVLSLGAEPKLDV 207 (500)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~---~g~~~~~d~lIlAtG~~p~~~~ 207 (500)
++..++.+... ..+.+. ++.++.+|.||+|+|.+|....
T Consensus 229 ~V~~i~~~~~~-----------~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~ 270 (463)
T TIGR02053 229 QVKAVSVRGGG-----------KIITVEKPGGQGEVEADELLVATGRRPNTDG 270 (463)
T ss_pred EEEEEEEcCCE-----------EEEEEEeCCCceEEEeCEEEEeECCCcCCCC
Confidence 68888654321 122221 2357999999999999987653
No 193
>PRK08244 hypothetical protein; Provisional
Probab=98.25 E-value=4.1e-06 Score=88.37 Aligned_cols=34 Identities=26% Similarity=0.380 Sum_probs=31.7
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (500)
.++|+||||||+||++|..|++ .|++|+|||+.+
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~------~G~~v~viEr~~ 35 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELAL------AGVKTCVIERLK 35 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHH------CCCcEEEEecCC
Confidence 3789999999999999999999 799999999976
No 194
>PLN02507 glutathione reductase
Probab=98.25 E-value=5.9e-06 Score=86.99 Aligned_cols=101 Identities=20% Similarity=0.205 Sum_probs=74.9
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEEe-
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (500)
.++|+|||||+.|+++|..+++ .|.+|+|+++.+... . ..+ .++...+.+.+++.+++++.+
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~------~G~~Vtli~~~~~~l---------~-~~d-~~~~~~l~~~l~~~GI~i~~~~ 265 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRG------MGATVDLFFRKELPL---------R-GFD-DEMRAVVARNLEGRGINLHPRT 265 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHH------cCCeEEEEEecCCcC---------c-ccC-HHHHHHHHHHHHhCCCEEEeCC
Confidence 4789999999999999999988 578999999876521 1 111 233444566777889999987
Q ss_pred eEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCCCCCC
Q 010827 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDV 207 (500)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p~~~~ 207 (500)
.+.+++...+. ..+.++++..+.+|.|++|+|.+|....
T Consensus 266 ~V~~i~~~~~~-----------~~v~~~~g~~i~~D~vl~a~G~~pn~~~ 304 (499)
T PLN02507 266 NLTQLTKTEGG-----------IKVITDHGEEFVADVVLFATGRAPNTKR 304 (499)
T ss_pred EEEEEEEeCCe-----------EEEEECCCcEEEcCEEEEeecCCCCCCC
Confidence 78888643221 1455567778999999999999987643
No 195
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.25 E-value=5.9e-06 Score=86.52 Aligned_cols=104 Identities=17% Similarity=0.271 Sum_probs=75.1
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEEe-
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (500)
+++++|||||+.|+++|..+..+. ..|.+|+|+++.+.+ ....+ .++...+.+.+++.+++++.+
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~---~~G~~Vtli~~~~~i----------l~~~d-~~~~~~l~~~L~~~GI~i~~~~ 252 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYK---PRGGKVTLCYRNNMI----------LRGFD-STLRKELTKQLRANGINIMTNE 252 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhc---cCCCeEEEEecCCcc----------ccccC-HHHHHHHHHHHHHcCCEEEcCC
Confidence 578999999999999998776541 258899999998763 11111 234455667777889999986
Q ss_pred eEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCCCCC
Q 010827 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLD 206 (500)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p~~~ 206 (500)
.+.++...... ...+.+.++..+.+|.|++|+|.+|...
T Consensus 253 ~v~~i~~~~~~----------~~~v~~~~g~~i~~D~vl~a~G~~Pn~~ 291 (486)
T TIGR01423 253 NPAKVTLNADG----------SKHVTFESGKTLDVDVVMMAIGRVPRTQ 291 (486)
T ss_pred EEEEEEEcCCc----------eEEEEEcCCCEEEcCEEEEeeCCCcCcc
Confidence 67888643210 0135555677899999999999988754
No 196
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.24 E-value=5.9e-06 Score=86.50 Aligned_cols=100 Identities=22% Similarity=0.303 Sum_probs=72.6
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEEe-
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (500)
+++|+|||||+.|+++|..|++ .|.+|+|+|+.+.+. +. . ..++...+.+.+++.+++++.+
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~------~G~~Vtlv~~~~~~l---------~~-~-d~~~~~~l~~~l~~~gV~i~~~~ 234 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKN------YGVDVTIVEFLDRAL---------PN-E-DAEVSKEIAKQYKKLGVKILTGT 234 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHH------cCCeEEEEecCCCcC---------Cc-c-CHHHHHHHHHHHHHCCCEEEECC
Confidence 4799999999999999999998 588999999877521 11 1 1223445667777889999986
Q ss_pred eEEEEecCCCCCCCCCceeecCcEEEc--CCc--cEEEecEEEEeCCCCCCCC
Q 010827 158 RVKLLCPSDHLGVNGPMACTHGGTVLL--ESG--LIVEYDWLVLSLGAEPKLD 206 (500)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~--~~g--~~~~~d~lIlAtG~~p~~~ 206 (500)
.+..++..... ..+.+ .++ ..+.+|.||+|+|.+|...
T Consensus 235 ~v~~i~~~~~~-----------~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~ 276 (466)
T PRK07818 235 KVESIDDNGSK-----------VTVTVSKKDGKAQELEADKVLQAIGFAPRVE 276 (466)
T ss_pred EEEEEEEeCCe-----------EEEEEEecCCCeEEEEeCEEEECcCcccCCC
Confidence 78888654321 12222 244 4799999999999988754
No 197
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.24 E-value=4.3e-06 Score=84.91 Aligned_cols=32 Identities=28% Similarity=0.497 Sum_probs=30.2
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCC
Q 010827 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQS 117 (500)
Q Consensus 80 ~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~ 117 (500)
.||+||||||+|+++|..|++ .|++|+|+|+.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~------~G~~v~l~E~~ 33 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQ------KGIKTTIFESK 33 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHc------CCCeEEEecCC
Confidence 689999999999999999998 79999999986
No 198
>PRK07846 mycothione reductase; Reviewed
Probab=98.23 E-value=7.4e-06 Score=85.22 Aligned_cols=100 Identities=26% Similarity=0.322 Sum_probs=71.5
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEEe-
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (500)
+++++|||||+.|+++|..|++ .|.+|+|+++.+.+. ...+ .++...+.+.+ +.+++++.+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~------~G~~Vtli~~~~~ll----------~~~d-~~~~~~l~~l~-~~~v~i~~~~ 227 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSA------LGVRVTVVNRSGRLL----------RHLD-DDISERFTELA-SKRWDVRLGR 227 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHH------cCCeEEEEEcCCccc----------cccC-HHHHHHHHHHH-hcCeEEEeCC
Confidence 5799999999999999999998 588999999987632 1111 11222333333 357888875
Q ss_pred eEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCCCCCC
Q 010827 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDV 207 (500)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p~~~~ 207 (500)
++++++..... ..+.+.++..+.+|.|++|+|.+|....
T Consensus 228 ~v~~i~~~~~~-----------v~v~~~~g~~i~~D~vl~a~G~~pn~~~ 266 (451)
T PRK07846 228 NVVGVSQDGSG-----------VTLRLDDGSTVEADVLLVATGRVPNGDL 266 (451)
T ss_pred EEEEEEEcCCE-----------EEEEECCCcEeecCEEEEEECCccCccc
Confidence 78888654321 1355567778999999999999987654
No 199
>PRK06126 hypothetical protein; Provisional
Probab=98.23 E-value=7e-06 Score=87.75 Aligned_cols=36 Identities=31% Similarity=0.489 Sum_probs=33.0
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCC
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (500)
..++|+||||||+||++|..|++ .|++|+|||+.+.
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~------~G~~v~viEr~~~ 41 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGR------RGVDSILVERKDG 41 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHH------CCCcEEEEeCCCC
Confidence 45899999999999999999999 7999999999864
No 200
>PRK06185 hypothetical protein; Provisional
Probab=98.23 E-value=6e-06 Score=84.90 Aligned_cols=35 Identities=26% Similarity=0.526 Sum_probs=32.3
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (500)
..+||+|||||++|+++|..|++ .|++|+|||+.+
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~------~G~~v~liE~~~ 39 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLAR------AGVDVTVLEKHA 39 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHh------CCCcEEEEecCC
Confidence 45899999999999999999998 699999999975
No 201
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.22 E-value=3.2e-06 Score=86.52 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=32.0
Q ss_pred CCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHH
Q 010827 400 ETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAG 442 (500)
Q Consensus 400 ~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa 442 (500)
.+|+++..|++|++|.+.....+.| --..+.|...|..|+
T Consensus 360 ~~m~~k~~~gly~~GE~lDv~g~~G---GyNlq~a~~sg~~ag 399 (400)
T TIGR00275 360 KTMESKLVPGLYFAGEVLDVDGDTG---GYNLQWAWSSGYLAG 399 (400)
T ss_pred hhhhhcCCCCeEEEEEEEecCCCCC---chHHHHHHHHHHHhc
Confidence 4688778999999999998865544 357788888988876
No 202
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.22 E-value=4.9e-06 Score=85.44 Aligned_cols=101 Identities=21% Similarity=0.268 Sum_probs=78.4
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEEe-
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (500)
.++++|||+|+.||.+|..|++ +|++|+++|+.++...+... ..+...+.+.++.++++++.+
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~------~G~~v~l~e~~~~~~~~~~~----------~~~~~~~~~~l~~~gi~~~~~~ 199 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAK------RGKKVTLIEAADRLGGQLLD----------PEVAEELAELLEKYGVELLLGT 199 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHH------cCCeEEEEEcccccchhhhh----------HHHHHHHHHHHHHCCcEEEeCC
Confidence 4899999999999999999999 79999999999884322211 344566778888889999776
Q ss_pred eEEEEecCCCCCCCCCceeecCcE-EEcCCccEEEecEEEEeCCCCCC
Q 010827 158 RVKLLCPSDHLGVNGPMACTHGGT-VLLESGLIVEYDWLVLSLGAEPK 204 (500)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~-v~~~~g~~~~~d~lIlAtG~~p~ 204 (500)
.+..++...+.. . .. +...++..+.+|.+++++|.+|.
T Consensus 200 ~~~~i~~~~~~~------~---~~~~~~~~~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 200 KVVGVEGKGNTL------V---VERVVGIDGEEIKADLVIIGPGERPN 238 (415)
T ss_pred ceEEEEcccCcc------e---eeEEEEeCCcEEEeeEEEEeeccccc
Confidence 788888765420 0 01 46667778999999999999985
No 203
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.22 E-value=3e-05 Score=69.84 Aligned_cols=179 Identities=12% Similarity=0.055 Sum_probs=106.3
Q ss_pred cEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCCC-------C------------------------------
Q 010827 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTG-------T------------------------------ 287 (500)
Q Consensus 245 k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~~-------~------------------------------ 287 (500)
-.|+|||+|++|+-+|.+|++.+-+ |.+++++-.+.-.. +
T Consensus 31 sDViIVGaGPsGLtAAyyLAk~g~k---V~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~d 107 (262)
T COG1635 31 SDVIIVGAGPSGLTAAYYLAKAGLK---VAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVAD 107 (262)
T ss_pred ccEEEECcCcchHHHHHHHHhCCce---EEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEec
Confidence 3899999999999999999998777 99999876554221 1
Q ss_pred -cchHHHHHHHHHhCCcEEEcCceEEEEecCcc-ccccccCCCCCcccccccccCCcceeEeeccccc---CCCccEEee
Q 010827 288 -PGNREAALKVLSARKVQLVLGYFVRCIRRVGE-FEASVKQPESGAIPNIAADKNSDKYILELQPAIK---GLESQIFEA 362 (500)
Q Consensus 288 -~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~---~~~~~~l~~ 362 (500)
.+....+....-+.|.++.....+..+.-.++ .. .++.+.+..-.. .-+.-.+++
T Consensus 108 s~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rV--------------------aGvVvNWt~V~~~~lhvDPl~i~a 167 (262)
T COG1635 108 SAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRV--------------------AGVVVNWTPVQMAGLHVDPLTIRA 167 (262)
T ss_pred HHHHHHHHHHHHHhcCceeeecceEEEEEEecCCce--------------------EEEEEecchhhhcccccCcceeeE
Confidence 11222233334456788888888887765432 11 344444322111 114567889
Q ss_pred cEEEEecCCCCCC-CCCCCCCCccCCCCCCC--------CCceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHH
Q 010827 363 DLVLWTVGSKPLL-PHVEPPNNRLHDLPLNA--------RGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQV 433 (500)
Q Consensus 363 D~vi~a~G~~p~~-~~~~~~~~~~~~~~~~~--------~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~ 433 (500)
+.||-+||..... .++..-.. ..+.++-. .-.+.|+.+.+. +|++|++|-+++..+ |.++..-+.-
T Consensus 168 ~~VvDaTGHda~v~~~~~kr~~-~l~~~~~Ge~~mw~e~~E~lvV~~T~eV--~pgL~vaGMa~~av~--G~pRMGPiFG 242 (262)
T COG1635 168 KAVVDATGHDAEVVSFLAKRIP-ELGIEVPGEKSMWAERGEDLVVENTGEV--YPGLYVAGMAVNAVH--GLPRMGPIFG 242 (262)
T ss_pred EEEEeCCCCchHHHHHHHHhcc-ccccccCCCcchhhhHHHHHHHhccccc--cCCeEeehhhHHhhc--CCcccCchhh
Confidence 9999999987541 11110000 00111111 112344444443 899999999887532 3333222333
Q ss_pred H-HHHHHHHHHHHHHHHCC
Q 010827 434 A-FQQADFAGWNLWAAIND 451 (500)
Q Consensus 434 A-~~~g~~aa~~i~~~l~~ 451 (500)
+ ..+|+.+|+.|..+|..
T Consensus 243 gMllSGkkaAe~i~e~L~~ 261 (262)
T COG1635 243 GMLLSGKKAAEEILEKLKL 261 (262)
T ss_pred hhhhchHHHHHHHHHHhhc
Confidence 3 47899999999887753
No 204
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.22 E-value=3.1e-06 Score=78.35 Aligned_cols=33 Identities=30% Similarity=0.572 Sum_probs=31.1
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC
Q 010827 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (500)
Q Consensus 80 ~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (500)
.+|+|||+|+||++||..|++ .|.+|+||||+.
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~------aG~~vtV~eKg~ 34 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALRE------AGREVTVFEKGR 34 (331)
T ss_pred CcEEEEccchHHHHHHHHHHh------cCcEEEEEEcCC
Confidence 479999999999999999999 799999999987
No 205
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.20 E-value=2.1e-06 Score=63.97 Aligned_cols=33 Identities=27% Similarity=0.430 Sum_probs=29.1
Q ss_pred EECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCccc
Q 010827 84 ILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF 122 (500)
Q Consensus 84 IIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~ 122 (500)
|||||++||++|..|++ .|++|+|+|+++....
T Consensus 1 IiGaG~sGl~aA~~L~~------~g~~v~v~E~~~~~GG 33 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAK------AGYRVTVFEKNDRLGG 33 (68)
T ss_dssp EES-SHHHHHHHHHHHH------TTSEEEEEESSSSSSG
T ss_pred CEeeCHHHHHHHHHHHH------CCCcEEEEecCcccCc
Confidence 89999999999999999 6899999999997543
No 206
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.19 E-value=5.9e-06 Score=91.76 Aligned_cols=102 Identities=19% Similarity=0.268 Sum_probs=75.2
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEEe-
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (500)
.++++|||||+.|+++|..|++ .|.+|+|++..+.+. ...++ ......+.+.+++.+|+++.+
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~------~G~~VtvVe~~~~ll---------~~~ld-~~~~~~l~~~L~~~GV~v~~~~ 208 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKN------LGVETHVIEFAPMLM---------AEQLD-QMGGEQLRRKIESMGVRVHTSK 208 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHH------cCCeEEEEeccccch---------hhhcC-HHHHHHHHHHHHHCCCEEEcCC
Confidence 4689999999999999999998 588999999987521 11111 222345667778889999986
Q ss_pred eEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCCCC
Q 010827 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKL 205 (500)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p~~ 205 (500)
.+..+..+... ....+.++++..+.+|.||+|+|.+|+.
T Consensus 209 ~v~~I~~~~~~---------~~~~v~~~dG~~i~~D~Vv~A~G~rPn~ 247 (847)
T PRK14989 209 NTLEIVQEGVE---------ARKTMRFADGSELEVDFIVFSTGIRPQD 247 (847)
T ss_pred eEEEEEecCCC---------ceEEEEECCCCEEEcCEEEECCCcccCc
Confidence 77788543210 0014667788899999999999998874
No 207
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.19 E-value=8.6e-06 Score=82.36 Aligned_cols=35 Identities=26% Similarity=0.466 Sum_probs=30.9
Q ss_pred eEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCC
Q 010827 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (500)
Q Consensus 81 ~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (500)
||+|||||+||+++|..|++. .+|++|+++|+.+.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~----~~g~~V~lle~~~~ 35 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRA----RPDFRIRVIEAGRT 35 (370)
T ss_pred CEEEECccHHHHHHHHHHHhc----CCCCeEEEEeCCCC
Confidence 699999999999999999973 14999999999873
No 208
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.19 E-value=1.6e-06 Score=89.50 Aligned_cols=36 Identities=22% Similarity=0.400 Sum_probs=29.0
Q ss_pred eEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCccc
Q 010827 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF 122 (500)
Q Consensus 81 ~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~ 122 (500)
|||||||||||++||..+++ .|.+|+|||+.+.++.
T Consensus 1 DVVVvGgG~aG~~AAi~AAr------~G~~VlLiE~~~~lGG 36 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAAR------AGAKVLLIEKGGFLGG 36 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHH------TTS-EEEE-SSSSSTG
T ss_pred CEEEECccHHHHHHHHHHHH------CCCEEEEEECCccCCC
Confidence 79999999999999999999 6999999999986543
No 209
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.18 E-value=5.1e-06 Score=85.61 Aligned_cols=34 Identities=32% Similarity=0.533 Sum_probs=30.4
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCC-CeEEEEcCCCC
Q 010827 80 PRICILGGGFGGLYTALRLESLVWQDDKK-PQVLLVDQSER 119 (500)
Q Consensus 80 ~~VvIIGgG~AGl~aA~~L~~~~~~~~~g-~~V~lie~~~~ 119 (500)
.+|+|||||++||++|..|++ .| ++|+|||+.+.
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~------~g~~~v~v~Er~~~ 35 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCK------HSHLNVQLFEAAPA 35 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHh------cCCCCEEEEecCCc
Confidence 379999999999999999998 56 59999999874
No 210
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.18 E-value=1e-05 Score=84.53 Aligned_cols=40 Identities=20% Similarity=0.404 Sum_probs=33.6
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCc
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF 120 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~ 120 (500)
...+||||||||..|+++|++|++.. .+.+|+|+||.+.+
T Consensus 43 ~~~~DVvIIGGGI~G~a~A~~La~~~----~~~~V~VlEk~~~~ 82 (497)
T PTZ00383 43 SDVYDVVIVGGGVTGTALFYTLSKFT----NLKKIALIERRSDF 82 (497)
T ss_pred CCcccEEEECccHHHHHHHHHHHhhC----CCCEEEEEecCcch
Confidence 44689999999999999999999842 34799999998643
No 211
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.18 E-value=2e-05 Score=84.19 Aligned_cols=37 Identities=24% Similarity=0.438 Sum_probs=33.8
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCC
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (500)
....+|+||||||+||++|..|++ .|++|+|||+.+.
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~------~G~~v~viE~~~~ 57 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQ------QGVPVVLLDDDDT 57 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHh------CCCcEEEEeCCCC
Confidence 456899999999999999999998 6999999999875
No 212
>PRK14694 putative mercuric reductase; Provisional
Probab=98.18 E-value=1e-05 Score=84.69 Aligned_cols=99 Identities=13% Similarity=0.196 Sum_probs=72.1
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEEe-
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (500)
+++++|||+|+.|+++|..|++ .|.+|+++++...+ + .. ..++...+.+.+++.+++++.+
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~------~g~~Vtlv~~~~~l----------~-~~-~~~~~~~l~~~l~~~GI~v~~~~ 239 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFAR------LGSRVTVLARSRVL----------S-QE-DPAVGEAIEAAFRREGIEVLKQT 239 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHH------cCCeEEEEECCCCC----------C-CC-CHHHHHHHHHHHHhCCCEEEeCC
Confidence 4789999999999999999998 57899999875321 1 11 1233455677777889999986
Q ss_pred eEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCCCCCC
Q 010827 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDV 207 (500)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p~~~~ 207 (500)
.+..++.+... ..+..+++ .+.+|.||+|+|.+|+...
T Consensus 240 ~v~~i~~~~~~-----------~~v~~~~~-~i~~D~vi~a~G~~pn~~~ 277 (468)
T PRK14694 240 QASEVDYNGRE-----------FILETNAG-TLRAEQLLVATGRTPNTEN 277 (468)
T ss_pred EEEEEEEcCCE-----------EEEEECCC-EEEeCEEEEccCCCCCcCC
Confidence 78888654331 12333333 7999999999999987643
No 213
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.18 E-value=1.6e-06 Score=78.29 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=30.7
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCccc
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF 122 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~ 122 (500)
.+||+||||||+||+||++|++ .|++|++||++..++.
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~------~g~kV~v~E~~~~~GG 54 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAK------AGLKVAVIERKLSPGG 54 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHH------HTS-EEEEESSSS-BT
T ss_pred cCCEEEECCChhHHHHHHHHHH------CCCeEEEEecCCCCCc
Confidence 4899999999999999999999 6999999999876543
No 214
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.17 E-value=1.2e-05 Score=83.72 Aligned_cols=100 Identities=22% Similarity=0.321 Sum_probs=71.0
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEEe-
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (500)
+++++|||||+.|+++|..|++ .|.+|++|++.+.+. ...+ .++...+.+.+ +.+++++.+
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~------~G~~Vtli~~~~~ll----------~~~d-~~~~~~l~~~~-~~gI~i~~~~ 230 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSA------LGTRVTIVNRSTKLL----------RHLD-EDISDRFTEIA-KKKWDIRLGR 230 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHh------CCCcEEEEEccCccc----------cccC-HHHHHHHHHHH-hcCCEEEeCC
Confidence 5799999999999999999988 588999999987631 1111 12223333433 347888875
Q ss_pred eEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCCCCCC
Q 010827 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDV 207 (500)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p~~~~ 207 (500)
++..++.+... ..+.+.+++.+.+|.|++|+|.+|+...
T Consensus 231 ~V~~i~~~~~~-----------v~v~~~~g~~i~~D~vl~a~G~~pn~~~ 269 (452)
T TIGR03452 231 NVTAVEQDGDG-----------VTLTLDDGSTVTADVLLVATGRVPNGDL 269 (452)
T ss_pred EEEEEEEcCCe-----------EEEEEcCCCEEEcCEEEEeeccCcCCCC
Confidence 78888654321 1355556778999999999999987643
No 215
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.17 E-value=8e-06 Score=82.65 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=30.6
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC
Q 010827 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (500)
Q Consensus 80 ~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (500)
+||+|||||.+|+++|++|++ +|++|+|+|+..
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~------~G~~V~vle~~~ 33 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAAR------RGLSVTVIERSS 33 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHH------CCCeEEEEeCCC
Confidence 489999999999999999998 689999999975
No 216
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.16 E-value=1.1e-05 Score=82.64 Aligned_cols=35 Identities=20% Similarity=0.415 Sum_probs=32.2
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCC
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (500)
..+|+||||||+|+++|..|++ .|++|+|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~------~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHL------AGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHh------cCCCEEEEEcCCc
Confidence 4789999999999999999999 7999999999863
No 217
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.16 E-value=8.1e-05 Score=70.94 Aligned_cols=136 Identities=16% Similarity=0.049 Sum_probs=80.5
Q ss_pred CcchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccEEeecEEE
Q 010827 287 TPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVL 366 (500)
Q Consensus 287 ~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi 366 (500)
.-.+.+.+.+.+++.|..++++-.|...+-.+ ++|+--.. .......+.+|..|
T Consensus 257 GiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~-----------------------~~v~~i~t---rn~~diP~~a~~~V 310 (421)
T COG3075 257 GIRLHNQLQRQFEQLGGLWMPGDEVKKATCKG-----------------------GRVTEIYT---RNHADIPLRADFYV 310 (421)
T ss_pred hhhHHHHHHHHHHHcCceEecCCceeeeeeeC-----------------------CeEEEEEe---cccccCCCChhHee
Confidence 45678888999999999999999998887655 33332211 11133455689999
Q ss_pred EecCCCCCCCCCCCCC-C--ccCCCCC--CCC-----------------CceEeCCCcccC----CCCCEEEeccccccc
Q 010827 367 WTVGSKPLLPHVEPPN-N--RLHDLPL--NAR-----------------GQAETDETLCVK----GHPRIFALGDSSALR 420 (500)
Q Consensus 367 ~a~G~~p~~~~~~~~~-~--~~~~~~~--~~~-----------------g~i~vd~~~~t~----~~~~vyaiGD~~~~~ 420 (500)
+|+|.--...+..+-. . -++++++ +++ =.+.+|.++|.. ...|+|+||-+.+..
T Consensus 311 LAsGsffskGLvae~d~I~EPIf~ldi~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGf 390 (421)
T COG3075 311 LASGSFFSKGLVAERDKIYEPIFDLDILQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGF 390 (421)
T ss_pred eeccccccccchhhhhhhhcchhhcccccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCC
Confidence 9998643322211100 0 0111211 111 125667777652 157999999999987
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHHC
Q 010827 421 DSSGRPLPATAQVAFQQADFAGWNLWAAIN 450 (500)
Q Consensus 421 ~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 450 (500)
++-... --...|+..|..+|..|.....
T Consensus 391 dpi~eg--cGsGVaivta~~aa~qi~~~~~ 418 (421)
T COG3075 391 DPIAEG--CGSGVAIVTALHAAEQIAERAG 418 (421)
T ss_pred cHHHhc--CCcchHHHHHHHHHHHHHHHhc
Confidence 761100 1122467778888888877654
No 218
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.16 E-value=1.2e-05 Score=84.07 Aligned_cols=101 Identities=20% Similarity=0.301 Sum_probs=72.4
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEEe
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD 157 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (500)
.+++|+|||||+.|+++|..+++ .|.+|+|+|+.+++. ++ .+ .++...+.+.+++.+++++.+
T Consensus 173 ~~~~vvIIGgG~ig~E~A~~l~~------~G~~Vtlie~~~~il---------~~-~d-~~~~~~l~~~l~~~gV~i~~~ 235 (466)
T PRK06115 173 VPKHLVVIGAGVIGLELGSVWRR------LGAQVTVVEYLDRIC---------PG-TD-TETAKTLQKALTKQGMKFKLG 235 (466)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH------cCCeEEEEeCCCCCC---------CC-CC-HHHHHHHHHHHHhcCCEEEEC
Confidence 35899999999999999999988 588999999987631 11 11 223345666777889999986
Q ss_pred -eEEEEecCCCCCCCCCceeecCcEEEc-----CCccEEEecEEEEeCCCCCCCC
Q 010827 158 -RVKLLCPSDHLGVNGPMACTHGGTVLL-----ESGLIVEYDWLVLSLGAEPKLD 206 (500)
Q Consensus 158 -~v~~i~~~~~~~~~~~~~~~~~~~v~~-----~~g~~~~~d~lIlAtG~~p~~~ 206 (500)
.+.++...... ..+.. .++..+.+|.|++|+|.+|+..
T Consensus 236 ~~V~~i~~~~~~-----------v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~ 279 (466)
T PRK06115 236 SKVTGATAGADG-----------VSLTLEPAAGGAAETLQADYVLVAIGRRPYTQ 279 (466)
T ss_pred cEEEEEEEcCCe-----------EEEEEEEcCCCceeEEEeCEEEEccCCccccc
Confidence 78888654221 11221 2235799999999999988654
No 219
>PRK11445 putative oxidoreductase; Provisional
Probab=98.16 E-value=8.6e-06 Score=81.98 Aligned_cols=34 Identities=26% Similarity=0.345 Sum_probs=30.7
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCC
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (500)
++||+||||||||+++|..|++ . ++|+|+|+.+.
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~------~-~~V~liE~~~~ 34 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAG------K-MKVIAIDKKHQ 34 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhc------c-CCEEEEECCCc
Confidence 3799999999999999999988 6 89999998763
No 220
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.15 E-value=1.1e-05 Score=83.28 Aligned_cols=99 Identities=21% Similarity=0.291 Sum_probs=73.1
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccC--------CCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCC
Q 010827 80 PRICILGGGFGGLYTALRLESLVWQ--------DDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTG 151 (500)
Q Consensus 80 ~~VvIIGgG~AGl~aA~~L~~~~~~--------~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 151 (500)
++|+|||||+.|++.|..|+.+... ..++.+|+|+++.+.+. ...+ ..+.....+.+++.+
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll----------~~~~-~~~~~~~~~~L~~~g 242 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL----------GSFD-QALRKYGQRRLRRLG 242 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc----------ccCC-HHHHHHHHHHHHHCC
Confidence 4899999999999999999764210 01368999999987631 1111 233455667788899
Q ss_pred cEEEEe-eEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCCC
Q 010827 152 VQFFKD-RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPK 204 (500)
Q Consensus 152 v~~~~~-~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p~ 204 (500)
|+++.+ .+.+++.+ .+.+++|+.+.+|.+|+++|..|.
T Consensus 243 V~v~~~~~v~~v~~~---------------~v~~~~g~~i~~d~vi~~~G~~~~ 281 (424)
T PTZ00318 243 VDIRTKTAVKEVLDK---------------EVVLKDGEVIPTGLVVWSTGVGPG 281 (424)
T ss_pred CEEEeCCeEEEEeCC---------------EEEECCCCEEEccEEEEccCCCCc
Confidence 999975 78888643 466778889999999999998775
No 221
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=98.14 E-value=1.1e-05 Score=80.73 Aligned_cols=106 Identities=25% Similarity=0.348 Sum_probs=82.4
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEEe-
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (500)
..+||++|+|+.||++|..|.. .+++||+|++.+... . ..-...+...+..++++.+++++.+
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~------~~~~VT~V~~e~~~~---------~-~lf~~~i~~~~~~y~e~kgVk~~~~t 276 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVS------KAKSVTVVFPEPWLL---------P-RLFGPSIGQFYEDYYENKGVKFYLGT 276 (478)
T ss_pred CceEEEECchHHHHHHHHHHHh------cCceEEEEccCccch---------h-hhhhHHHHHHHHHHHHhcCeEEEEec
Confidence 5789999999999999999998 689999999987621 1 1222445667888899999999997
Q ss_pred eEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCCCCCCCC
Q 010827 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVP 209 (500)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p~~~~i~ 209 (500)
.+.++.....- + ...+.+.+++++.+|-||+.+|++|......
T Consensus 277 ~~s~l~~~~~G-----e----v~~V~l~dg~~l~adlvv~GiG~~p~t~~~~ 319 (478)
T KOG1336|consen 277 VVSSLEGNSDG-----E----VSEVKLKDGKTLEADLVVVGIGIKPNTSFLE 319 (478)
T ss_pred ceeecccCCCC-----c----EEEEEeccCCEeccCeEEEeecccccccccc
Confidence 55566544320 0 1268889999999999999999999877655
No 222
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.14 E-value=1.3e-05 Score=83.25 Aligned_cols=99 Identities=22% Similarity=0.352 Sum_probs=72.7
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEEe-
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (500)
+++|+|||+|+.|+++|..|++ .|.+|+|+++.+.+. +. . ...+...+.+.+++.+++++.+
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~------~g~~Vtli~~~~~~l---------~~-~-~~~~~~~l~~~l~~~gV~v~~~~ 220 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFAN------FGSKVTILEAASLFL---------PR-E-DRDIADNIATILRDQGVDIILNA 220 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHH------CCCeEEEEecCCCCC---------CC-c-CHHHHHHHHHHHHhCCCEEEeCC
Confidence 4789999999999999999998 588999999987531 11 1 1223345667777889999986
Q ss_pred eEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCCCCC
Q 010827 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLD 206 (500)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p~~~ 206 (500)
.+.+++.+... ..+..+++ .+.+|.|++|+|.+|+..
T Consensus 221 ~v~~i~~~~~~-----------v~v~~~~g-~i~~D~vl~a~G~~pn~~ 257 (441)
T PRK08010 221 HVERISHHENQ-----------VQVHSEHA-QLAVDALLIASGRQPATA 257 (441)
T ss_pred EEEEEEEcCCE-----------EEEEEcCC-eEEeCEEEEeecCCcCCC
Confidence 78888654321 13444444 589999999999998754
No 223
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.14 E-value=1.3e-05 Score=85.36 Aligned_cols=36 Identities=25% Similarity=0.297 Sum_probs=33.1
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (500)
...++|+||||||+|+++|..|++ .|++|+|||+.+
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~------~G~~v~v~Er~~ 43 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQ------YGVRVLVLERWP 43 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHH------CCCcEEEEecCC
Confidence 455899999999999999999999 699999999986
No 224
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.13 E-value=6.8e-06 Score=82.43 Aligned_cols=100 Identities=24% Similarity=0.294 Sum_probs=74.9
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccC-------CCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCC
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQ-------DDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTG 151 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~-------~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 151 (500)
..+|+||||||.|++.|..|+.+... .+...+|+|+|+.+... +. -...+.....+.+++.|
T Consensus 155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL---------p~--~~~~l~~~a~~~L~~~G 223 (405)
T COG1252 155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL---------PM--FPPKLSKYAERALEKLG 223 (405)
T ss_pred eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc---------cC--CCHHHHHHHHHHHHHCC
Confidence 35799999999999999988775321 11146999999998731 11 12334455667888999
Q ss_pred cEEEEe-eEEEEecCCCCCCCCCceeecCcEEEcCCcc-EEEecEEEEeCCCCCC
Q 010827 152 VQFFKD-RVKLLCPSDHLGVNGPMACTHGGTVLLESGL-IVEYDWLVLSLGAEPK 204 (500)
Q Consensus 152 v~~~~~-~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~d~lIlAtG~~p~ 204 (500)
|+++.+ .|++++++ .++++++. .+.++.+|.|+|.++.
T Consensus 224 V~v~l~~~Vt~v~~~---------------~v~~~~g~~~I~~~tvvWaaGv~a~ 263 (405)
T COG1252 224 VEVLLGTPVTEVTPD---------------GVTLKDGEEEIPADTVVWAAGVRAS 263 (405)
T ss_pred CEEEcCCceEEECCC---------------cEEEccCCeeEecCEEEEcCCCcCC
Confidence 999997 88899776 57777776 4999999999998754
No 225
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.13 E-value=7.6e-06 Score=78.06 Aligned_cols=35 Identities=34% Similarity=0.515 Sum_probs=32.3
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (500)
...+|+|||||.-|+++|++|++ +|.++.++|+-+
T Consensus 6 ~~~~viiVGAGVfG~stAyeLaK------~g~killLeqf~ 40 (399)
T KOG2820|consen 6 KSRDVIIVGAGVFGLSTAYELAK------RGDKILLLEQFP 40 (399)
T ss_pred cceeEEEEcccccchHHHHHHHh------cCCeEEEEeccC
Confidence 45799999999999999999999 789999999987
No 226
>PRK06996 hypothetical protein; Provisional
Probab=98.13 E-value=9.6e-06 Score=83.10 Aligned_cols=40 Identities=28% Similarity=0.251 Sum_probs=32.0
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (500)
.+.++|+||||||+|+++|..|++.+. .+|++|+|+|+.+
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~--~~g~~v~l~e~~~ 48 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLARRSA--TRALSIALIDARE 48 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCC--cCCceEEEecCCC
Confidence 345899999999999999999998420 0256899999964
No 227
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.13 E-value=5.9e-06 Score=85.72 Aligned_cols=53 Identities=17% Similarity=0.185 Sum_probs=34.5
Q ss_pred HHHHhccCCcEEEEeeEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCCC
Q 010827 143 FADLLANTGVQFFKDRVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPK 204 (500)
Q Consensus 143 ~~~~~~~~~v~~~~~~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p~ 204 (500)
+.+...+.|++++.+.|..+..+..- . -..+.++++.++++|.+|-|||....
T Consensus 160 L~~~A~~~Gv~~~~g~V~~v~~~~~g-----~----i~~v~~~~g~~i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 160 LRRHAEERGVEVIEGTVVDVELDEDG-----R----ITAVRLDDGRTIEADFFIDASGRRSL 212 (454)
T ss_dssp HHHHHHHTT-EEEET-EEEEEE-TTS-----E----EEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred HHHHHhcCCCEEEeCEEEEEEEcCCC-----C----EEEEEECCCCEEEEeEEEECCCccch
Confidence 34555567999999988877655431 0 02577788989999999999997543
No 228
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.12 E-value=1.1e-05 Score=82.32 Aligned_cols=35 Identities=23% Similarity=0.442 Sum_probs=32.2
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCC
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (500)
.++|+||||||+|+++|..|++ +|++|+|||+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~------~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHK------AGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHH------CCCCEEEEECCCC
Confidence 4789999999999999999999 7999999999763
No 229
>PLN02661 Putative thiazole synthesis
Probab=98.11 E-value=8.4e-05 Score=73.25 Aligned_cols=180 Identities=18% Similarity=0.138 Sum_probs=100.2
Q ss_pred cEEEEECCChhHHHHHHHHHHH-HhhcCeEEEEecCCccCCC---------------------------CCc--------
Q 010827 245 IRVAVVGCGYSGVELAATVSER-LEEKGIVQAINVETTICPT---------------------------GTP-------- 288 (500)
Q Consensus 245 k~V~VvGgG~~g~e~A~~l~~~-~~~~~~vtlv~~~~~~~~~---------------------------~~~-------- 288 (500)
-+|+|||+|..|+-+|..|++. +.+ |+++++...+... ++.
T Consensus 93 ~DVlIVGaG~AGl~AA~~La~~~g~k---V~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~ 169 (357)
T PLN02661 93 TDVVIVGAGSAGLSCAYELSKNPNVK---VAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIK 169 (357)
T ss_pred CCEEEECCHHHHHHHHHHHHHcCCCe---EEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEec
Confidence 4899999999999999999864 333 9999986543210 000
Q ss_pred ---chHHHHH-HHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeeccc--ccC----CCcc
Q 010827 289 ---GNREAAL-KVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPA--IKG----LESQ 358 (500)
Q Consensus 289 ---~~~~~~~-~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~--~~~----~~~~ 358 (500)
.....+. +.+++.||+++.++.+.++..+++.. .++.+.+... ... .+..
T Consensus 170 ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grV--------------------aGVVvnw~~v~~~~~~~s~~dp~ 229 (357)
T PLN02661 170 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRV--------------------GGVVTNWALVAQNHDTQSCMDPN 229 (357)
T ss_pred chHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEE--------------------EEEEeecchhhhccCCCCcccee
Confidence 0001122 23344678888888888776543211 3444321100 000 1224
Q ss_pred EEeecEEEEecCCCCCCC-----CCCCCCC-----ccCCCCCCCCCceEeCCCcccCCCCCEEEecccccccCCCCCCCC
Q 010827 359 IFEADLVLWTVGSKPLLP-----HVEPPNN-----RLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLP 428 (500)
Q Consensus 359 ~l~~D~vi~a~G~~p~~~-----~~~~~~~-----~~~~~~~~~~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~ 428 (500)
.+.++.||+|||..+..- .+...+. -...+..+..-...|+.+-+ -+|++|++|-.+...+ |.++.
T Consensus 230 ~I~AkaVVlATGh~g~~ga~~~~~~~~~g~~~~~pg~~~~~~~~~e~~~v~~t~e--v~pgl~~~gm~~~~~~--g~~rm 305 (357)
T PLN02661 230 VMEAKVVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNAAEDAIVRLTRE--VVPGMIVTGMEVAEID--GSPRM 305 (357)
T ss_pred EEECCEEEEcCCCCCcchhhhhhcccccCCccCCCCccccchhhHHHHHHhccCc--ccCCEEEeccchhhhc--CCCcc
Confidence 789999999999665310 1111110 00001111111122233333 3899999999987533 33333
Q ss_pred chHHHH-HHHHHHHHHHHHHHHCC
Q 010827 429 ATAQVA-FQQADFAGWNLWAAIND 451 (500)
Q Consensus 429 ~~~~~A-~~~g~~aa~~i~~~l~~ 451 (500)
.-+.-+ ...|+.+|+.|...|..
T Consensus 306 gp~fg~m~~sg~k~a~~~~~~l~~ 329 (357)
T PLN02661 306 GPTFGAMMISGQKAAHLALKALGL 329 (357)
T ss_pred CchhHhHHhhhHHHHHHHHHHHcc
Confidence 333334 48999999999999874
No 230
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.10 E-value=1e-05 Score=85.41 Aligned_cols=63 Identities=16% Similarity=0.145 Sum_probs=43.0
Q ss_pred CCceEeCC-CcccCCCCCEEEecccccccCCCC-CCCCchHHHHHHHHHHHHHHHHHHHCCCCCCC
Q 010827 393 RGQAETDE-TLCVKGHPRIFALGDSSALRDSSG-RPLPATAQVAFQQADFAGWNLWAAINDRPLLP 456 (500)
Q Consensus 393 ~g~i~vd~-~~~t~~~~~vyaiGD~~~~~~~~~-~~~~~~~~~A~~~g~~aa~~i~~~l~~~~~~p 456 (500)
-|.+.+|. ...+ ..|++||+|+|+....... +.-......++..|+.++.+....+......+
T Consensus 355 mGGi~~~~~~~~t-~i~GLfAaGe~~~~~~hGanrlG~nsl~~~~v~G~~Ag~~aa~y~~~~~~~~ 419 (562)
T COG1053 355 MGGIPTNTGRVET-KIPGLFAAGEAAGVSHHGANRLGGNSLLDLVVFGRIAGEAAAEYAKEKSGSP 419 (562)
T ss_pred cCCEeeccccccc-CCCCeEECceecccccCCcccCCccccHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 46688884 4455 6899999999997533111 11134666788899999988888877654443
No 231
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.10 E-value=1e-05 Score=88.31 Aligned_cols=33 Identities=36% Similarity=0.496 Sum_probs=31.0
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC
Q 010827 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (500)
Q Consensus 80 ~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (500)
++|+|||||.+|+++|++|++ +|++|+|+|+..
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~------~G~~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALAR------RGWQVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHH------CCCeEEEEecCC
Confidence 699999999999999999999 799999999974
No 232
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.09 E-value=1.2e-05 Score=84.99 Aligned_cols=36 Identities=22% Similarity=0.426 Sum_probs=33.3
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (500)
...+||+|||||..|+++|+.|++ +|++|+|+|+.+
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~------rG~~V~LlEk~d 39 (502)
T PRK13369 4 PETYDLFVIGGGINGAGIARDAAG------RGLKVLLCEKDD 39 (502)
T ss_pred CcccCEEEECCCHHHHHHHHHHHh------CCCcEEEEECCC
Confidence 445899999999999999999999 799999999986
No 233
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.09 E-value=2e-05 Score=83.09 Aligned_cols=100 Identities=19% Similarity=0.222 Sum_probs=71.8
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEEe-
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (500)
+++++|||||+.|+++|..|++ .|.+|+|+++... + ... ..++...+.+.+++.+++++.+
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~------~G~~Vtli~~~~~----------l-~~~-d~~~~~~l~~~l~~~GV~i~~~~ 243 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNE------LGFDVTVAVRSIP----------L-RGF-DRQCSEKVVEYMKEQGTLFLEGV 243 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHH------cCCcEEEEEcCcc----------c-ccC-CHHHHHHHHHHHHHcCCEEEcCC
Confidence 4689999999999999999998 5889999987421 1 111 1223345667777889999986
Q ss_pred eEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCCCCCC
Q 010827 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDV 207 (500)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p~~~~ 207 (500)
.+..+...... ..+.+.++..+.+|.|++|+|.+|+...
T Consensus 244 ~v~~v~~~~~~-----------~~v~~~~g~~i~~D~vl~a~G~~pn~~~ 282 (499)
T PTZ00052 244 VPINIEKMDDK-----------IKVLFSDGTTELFDTVLYATGRKPDIKG 282 (499)
T ss_pred eEEEEEEcCCe-----------EEEEECCCCEEEcCEEEEeeCCCCCccc
Confidence 56666543210 1355556778999999999999987543
No 234
>PTZ00058 glutathione reductase; Provisional
Probab=98.09 E-value=1.9e-05 Score=83.80 Aligned_cols=101 Identities=14% Similarity=0.265 Sum_probs=72.1
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEEe-
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (500)
+++|+|||||+.|+++|..|++ .|.+|+|+++.+.+. ...+ .++...+.+.+++.+++++.+
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~------~G~~Vtli~~~~~il----------~~~d-~~i~~~l~~~L~~~GV~i~~~~ 299 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNR------LGAESYIFARGNRLL----------RKFD-ETIINELENDMKKNNINIITHA 299 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHH------cCCcEEEEEeccccc----------ccCC-HHHHHHHHHHHHHCCCEEEeCC
Confidence 5899999999999999999998 588999999987521 1111 233445666777889999986
Q ss_pred eEEEEecCCCCCCCCCceeecCcEEEc-CCccEEEecEEEEeCCCCCCCC
Q 010827 158 RVKLLCPSDHLGVNGPMACTHGGTVLL-ESGLIVEYDWLVLSLGAEPKLD 206 (500)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~-~~g~~~~~d~lIlAtG~~p~~~ 206 (500)
.+.+++..... . ..+.. +++..+.+|.|++|+|.+|...
T Consensus 300 ~V~~I~~~~~~-----~-----v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~ 339 (561)
T PTZ00058 300 NVEEIEKVKEK-----N-----LTIYLSDGRKYEHFDYVIYCVGRSPNTE 339 (561)
T ss_pred EEEEEEecCCC-----c-----EEEEECCCCEEEECCEEEECcCCCCCcc
Confidence 77888653210 0 02222 3335799999999999888754
No 235
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.08 E-value=1.5e-05 Score=80.53 Aligned_cols=37 Identities=27% Similarity=0.423 Sum_probs=33.4
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (500)
+++||+|||||..|+++|+.|.++. ++++|+|+||.+
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~----p~~~V~llEk~~ 38 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYE----PDLSVALLEKED 38 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhC----CCceEEEEEccC
Confidence 4589999999999999999999963 569999999987
No 236
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.07 E-value=2.1e-05 Score=82.31 Aligned_cols=102 Identities=18% Similarity=0.246 Sum_probs=71.2
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEEe
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD 157 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (500)
.+++|+|||+|+.|+++|..|++ .|.+|+++++.+.+. ... ..++...+.+.+++. ++++.+
T Consensus 168 ~~k~v~VIGgG~~g~E~A~~l~~------~g~~Vtli~~~~~~l----------~~~-d~~~~~~~~~~l~~~-I~i~~~ 229 (460)
T PRK06292 168 LPKSLAVIGGGVIGLELGQALSR------LGVKVTVFERGDRIL----------PLE-DPEVSKQAQKILSKE-FKIKLG 229 (460)
T ss_pred cCCeEEEECCCHHHHHHHHHHHH------cCCcEEEEecCCCcC----------cch-hHHHHHHHHHHHhhc-cEEEcC
Confidence 35799999999999999999998 588999999987632 111 123344555667677 888875
Q ss_pred -eEEEEecCCCCCCCCCceeecCcEEEc--CCccEEEecEEEEeCCCCCCCCC
Q 010827 158 -RVKLLCPSDHLGVNGPMACTHGGTVLL--ESGLIVEYDWLVLSLGAEPKLDV 207 (500)
Q Consensus 158 -~v~~i~~~~~~~~~~~~~~~~~~~v~~--~~g~~~~~d~lIlAtG~~p~~~~ 207 (500)
.+.+++..... .+ .+.. .++..+.+|.|++|+|.+|+...
T Consensus 230 ~~v~~i~~~~~~-----~v-----~~~~~~~~~~~i~~D~vi~a~G~~p~~~~ 272 (460)
T PRK06292 230 AKVTSVEKSGDE-----KV-----EELEKGGKTETIEADYVLVATGRRPNTDG 272 (460)
T ss_pred CEEEEEEEcCCc-----eE-----EEEEcCCceEEEEeCEEEEccCCccCCCC
Confidence 78888644320 00 2212 23357999999999999987653
No 237
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.07 E-value=4.2e-05 Score=80.76 Aligned_cols=60 Identities=12% Similarity=-0.005 Sum_probs=41.2
Q ss_pred CCCCceEeCCCcccC-----CCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHC
Q 010827 391 NARGQAETDETLCVK-----GHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIN 450 (500)
Q Consensus 391 ~~~g~i~vd~~~~t~-----~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 450 (500)
.-.|.+.+|...|+. ..|++||+|.|+.........--.....++..|+.|++++...+.
T Consensus 440 ~T~GGl~in~~~qVld~~g~pI~GLYAaGe~~gg~~g~~~~~G~~l~~~~~~GriAg~~aa~~~~ 504 (506)
T PRK06481 440 YTMGGVKINTNTEVLKKDGSPITGLYAAGEVTGGLHGENRIGGNSVADIIIFGRQAGTQSAEFAK 504 (506)
T ss_pred ecccCeEECCCceEEcCCCCEeCCeeeceeccccCCCCCCCchhhHHHHHHHHHHHHHHHHHhhh
Confidence 345778888777742 489999999997643221111124567889999999999987653
No 238
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.06 E-value=1.9e-05 Score=81.03 Aligned_cols=33 Identities=27% Similarity=0.443 Sum_probs=31.3
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC
Q 010827 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (500)
Q Consensus 80 ~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (500)
.+|+|||||++||++|..|++ +|++|+|+|+.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~------~G~~V~i~E~~~ 35 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAA------RGWAVTIIEKAQ 35 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHh------CCCcEEEEecCC
Confidence 789999999999999999998 799999999976
No 239
>PLN02985 squalene monooxygenase
Probab=98.05 E-value=3e-05 Score=81.71 Aligned_cols=37 Identities=22% Similarity=0.386 Sum_probs=33.1
Q ss_pred CCCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC
Q 010827 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (500)
Q Consensus 76 ~~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (500)
....+||+|||||++|+++|..|++ .|++|+|+|+..
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~------~G~~V~vlEr~~ 76 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAK------DGRRVHVIERDL 76 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHH------cCCeEEEEECcC
Confidence 3456899999999999999999998 799999999974
No 240
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.05 E-value=1.4e-05 Score=80.80 Aligned_cols=101 Identities=17% Similarity=0.102 Sum_probs=70.8
Q ss_pred EEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCC--CC---------cchHHHHHHHHHhCCcEEEcCceEEEE
Q 010827 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPT--GT---------PGNREAALKVLSARKVQLVLGYFVRCI 314 (500)
Q Consensus 246 ~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~--~~---------~~~~~~~~~~l~~~gV~i~~~~~v~~i 314 (500)
+|+|||||..|+.+|..+.+.......|+++++.+.+... ++ .++.....+.+++.||+++.+ .++.|
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~i 79 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATGI 79 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEE-EEEEE
Confidence 5899999999999999886543333349999987653211 11 112222345677789999886 78888
Q ss_pred ecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccEEeecEEEEecCCCCCCCCC
Q 010827 315 RRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHV 378 (500)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~p~~~~~ 378 (500)
+.+. ..|.+. +++++.+|.+|+|+|.+|..+.+
T Consensus 80 d~~~-----------------------~~V~~~--------~g~~~~yD~LviAtG~~~~~~~i 112 (364)
T TIGR03169 80 DPDR-----------------------RKVLLA--------NRPPLSYDVLSLDVGSTTPLSGV 112 (364)
T ss_pred eccc-----------------------CEEEEC--------CCCcccccEEEEccCCCCCCCCC
Confidence 8754 445554 56779999999999999875543
No 241
>PRK13748 putative mercuric reductase; Provisional
Probab=98.05 E-value=2.5e-05 Score=83.88 Aligned_cols=98 Identities=15% Similarity=0.205 Sum_probs=71.3
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEEe-
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (500)
+++|+|||||+.|+++|..|++ .|.+|+|+++...+ .. . ..++...+.+.+++.+++++.+
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~------~g~~Vtli~~~~~l----------~~-~-d~~~~~~l~~~l~~~gI~i~~~~ 331 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFAR------LGSKVTILARSTLF----------FR-E-DPAIGEAVTAAFRAEGIEVLEHT 331 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHH------cCCEEEEEecCccc----------cc-c-CHHHHHHHHHHHHHCCCEEEcCC
Confidence 4789999999999999999998 57899999985321 11 1 1233445667777889999976
Q ss_pred eEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCCCCC
Q 010827 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLD 206 (500)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p~~~ 206 (500)
.+..+..+... ..+..+++ .+.+|.||+|+|.+|+..
T Consensus 332 ~v~~i~~~~~~-----------~~v~~~~~-~i~~D~vi~a~G~~pn~~ 368 (561)
T PRK13748 332 QASQVAHVDGE-----------FVLTTGHG-ELRADKLLVATGRAPNTR 368 (561)
T ss_pred EEEEEEecCCE-----------EEEEecCC-eEEeCEEEEccCCCcCCC
Confidence 78887643321 13444444 699999999999998764
No 242
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.04 E-value=3.9e-05 Score=81.24 Aligned_cols=100 Identities=14% Similarity=0.119 Sum_probs=75.0
Q ss_pred ccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecC--CccCC------------CCCcchHHHHHHHHHhCCcEEEcCc
Q 010827 244 LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVE--TTICP------------TGTPGNREAALKVLSARKVQLVLGY 309 (500)
Q Consensus 244 ~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~--~~~~~------------~~~~~~~~~~~~~l~~~gV~i~~~~ 309 (500)
..+|+|||||+.|+.+|..+++.+.+ |+++... ..+.. ...+++.+.+.+.+++.|++++.++
T Consensus 212 ~~dVvIIGgGpAGl~AA~~la~~G~~---v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~ 288 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKGLR---TAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQ 288 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCC
Confidence 57999999999999999999998777 8888631 11110 1224456677788888999999999
Q ss_pred eEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccEEeecEEEEecCCCCCC
Q 010827 310 FVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLL 375 (500)
Q Consensus 310 ~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~p~~ 375 (500)
+|..+..+. +.+.+.+. ++..+.+|.+|+|+|..|..
T Consensus 289 ~V~~I~~~~-----------------------~~~~v~~~------~g~~i~~d~lIlAtGa~~~~ 325 (515)
T TIGR03140 289 RAKKIETED-----------------------GLIVVTLE------SGEVLKAKSVIVATGARWRK 325 (515)
T ss_pred EEEEEEecC-----------------------CeEEEEEC------CCCEEEeCEEEECCCCCcCC
Confidence 999987643 34455432 55689999999999998753
No 243
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.04 E-value=2.1e-05 Score=80.25 Aligned_cols=35 Identities=31% Similarity=0.530 Sum_probs=32.5
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (500)
++++|+|||||.+|+++|++|++ +|++|+++|+..
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~------~G~~V~vie~~~ 37 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAE------RGADVTVLEAGE 37 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHH------cCCEEEEEecCc
Confidence 46899999999999999999999 788999999876
No 244
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.04 E-value=0.00022 Score=73.48 Aligned_cols=33 Identities=27% Similarity=0.478 Sum_probs=30.7
Q ss_pred eEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCC
Q 010827 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (500)
Q Consensus 81 ~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (500)
+|+|||||.+|+++|.+|++ +|++|+|+|+...
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~------~g~~V~vle~~~~ 34 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQ------AGHEVTVIDRQPG 34 (416)
T ss_pred EEEEECCcHHHHHHHHHHHH------CCCEEEEEeCCCc
Confidence 79999999999999999999 6899999999753
No 245
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.04 E-value=2.5e-05 Score=81.81 Aligned_cols=100 Identities=18% Similarity=0.293 Sum_probs=69.2
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEEe-
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (500)
+++|+|||||+.|+++|..|++ .|.+|+|+|+.+.+. + ..+ .++...+.+.+++. ++++.+
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~------~G~~Vtlv~~~~~il---------~-~~d-~~~~~~~~~~l~~~-v~i~~~~ 235 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHR------LGSEVDVVEMFDQVI---------P-AAD-KDIVKVFTKRIKKQ-FNIMLET 235 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHH------cCCCEEEEecCCCCC---------C-cCC-HHHHHHHHHHHhhc-eEEEcCC
Confidence 4799999999999999999998 588999999987631 1 111 22334455556555 888775
Q ss_pred eEEEEecCCCCCCCCCceeecCcEEEcCC----ccEEEecEEEEeCCCCCCCCC
Q 010827 158 RVKLLCPSDHLGVNGPMACTHGGTVLLES----GLIVEYDWLVLSLGAEPKLDV 207 (500)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~----g~~~~~d~lIlAtG~~p~~~~ 207 (500)
.++.+...... ..+...+ ...+.+|.||+|+|.+|+...
T Consensus 236 ~v~~i~~~~~~-----------~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~ 278 (471)
T PRK06467 236 KVTAVEAKEDG-----------IYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKL 278 (471)
T ss_pred EEEEEEEcCCE-----------EEEEEEeCCCcceEEEeCEEEEeecccccCCc
Confidence 77777543221 1233222 246999999999999987643
No 246
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.03 E-value=4.6e-05 Score=80.77 Aligned_cols=100 Identities=16% Similarity=0.110 Sum_probs=75.5
Q ss_pred ccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecC--CccC--------C----CCCcchHHHHHHHHHhCCcEEEcCc
Q 010827 244 LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVE--TTIC--------P----TGTPGNREAALKVLSARKVQLVLGY 309 (500)
Q Consensus 244 ~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~--~~~~--------~----~~~~~~~~~~~~~l~~~gV~i~~~~ 309 (500)
..+|+|||||+.|+.+|..+++.+.+ ++++... .... + ....++.+.+.+.+++.|++++.++
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~---v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~ 287 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIR---TGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQ 287 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCC
Confidence 45899999999999999999998876 8888642 1110 1 1124566777888889999999999
Q ss_pred eEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccEEeecEEEEecCCCCCC
Q 010827 310 FVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLL 375 (500)
Q Consensus 310 ~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~p~~ 375 (500)
++..+...+ +...+.+. ++.++.+|.||+|+|..|..
T Consensus 288 ~V~~I~~~~-----------------------~~~~V~~~------~g~~i~a~~vViAtG~~~r~ 324 (517)
T PRK15317 288 RASKLEPAA-----------------------GLIEVELA------NGAVLKAKTVILATGARWRN 324 (517)
T ss_pred EEEEEEecC-----------------------CeEEEEEC------CCCEEEcCEEEECCCCCcCC
Confidence 999998754 34444432 55689999999999998753
No 247
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.03 E-value=1.1e-05 Score=82.10 Aligned_cols=98 Identities=20% Similarity=0.284 Sum_probs=62.8
Q ss_pred EEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCC------------------------CC---C-----------
Q 010827 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICP------------------------TG---T----------- 287 (500)
Q Consensus 246 ~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~------------------------~~---~----------- 287 (500)
+|+|||||++|+-+|..+++.+.+ |.++++.+.+.. .+ +
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~---V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~ 78 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGAR---VLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFS 78 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT-----EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-
T ss_pred cEEEECCCHHHHHHHHHHHhCCCC---EEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCC
Confidence 699999999999999999998877 999998765431 00 0
Q ss_pred ------------------------------cchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCccccccc
Q 010827 288 ------------------------------PGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAA 337 (500)
Q Consensus 288 ------------------------------~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~ 337 (500)
..+.+.+.+.+++.||+++++++|.+|+.+++
T Consensus 79 ~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~------------------ 140 (409)
T PF03486_consen 79 PEDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKED------------------ 140 (409)
T ss_dssp HHHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETT------------------
T ss_pred HHHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCC------------------
Confidence 12334456778889999999999999987552
Q ss_pred ccCCcceeEeecccccCCCccEEeecEEEEecCCCCC
Q 010827 338 DKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPL 374 (500)
Q Consensus 338 ~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~p~ 374 (500)
+.+.+++. +..++.+|.||+|+|-...
T Consensus 141 ----~~f~v~~~------~~~~~~a~~vILAtGG~S~ 167 (409)
T PF03486_consen 141 ----GVFGVKTK------NGGEYEADAVILATGGKSY 167 (409)
T ss_dssp ----EEEEEEET------TTEEEEESEEEE----SSS
T ss_pred ----ceeEeecc------CcccccCCEEEEecCCCCc
Confidence 33666642 6789999999999997653
No 248
>PRK14727 putative mercuric reductase; Provisional
Probab=98.02 E-value=3e-05 Score=81.39 Aligned_cols=98 Identities=12% Similarity=0.165 Sum_probs=70.6
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEEe-
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (500)
+++|+|||+|+.|+++|..|++ .|.+|+|+++...+ .. .+ ..+...+.+.+++.+++++.+
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~------~G~~Vtlv~~~~~l----------~~-~d-~~~~~~l~~~L~~~GV~i~~~~ 249 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYAR------LGSRVTILARSTLL----------FR-ED-PLLGETLTACFEKEGIEVLNNT 249 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHH------cCCEEEEEEcCCCC----------Cc-ch-HHHHHHHHHHHHhCCCEEEcCc
Confidence 4789999999999999999988 57899999875321 11 11 223345666777889999986
Q ss_pred eEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCCCCC
Q 010827 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLD 206 (500)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p~~~ 206 (500)
.+..+...... ..+...++ .+.+|.||+|+|..|+..
T Consensus 250 ~V~~i~~~~~~-----------~~v~~~~g-~i~aD~VlvA~G~~pn~~ 286 (479)
T PRK14727 250 QASLVEHDDNG-----------FVLTTGHG-ELRAEKLLISTGRHANTH 286 (479)
T ss_pred EEEEEEEeCCE-----------EEEEEcCC-eEEeCEEEEccCCCCCcc
Confidence 78777643321 13444444 689999999999998754
No 249
>PLN02661 Putative thiazole synthesis
Probab=98.01 E-value=3.1e-05 Score=76.21 Aligned_cols=39 Identities=26% Similarity=0.344 Sum_probs=33.6
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCc
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF 120 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~ 120 (500)
....||+|||||++|+.||++|++. +|++|+|+|++...
T Consensus 90 ~~~~DVlIVGaG~AGl~AA~~La~~-----~g~kV~viEk~~~~ 128 (357)
T PLN02661 90 YADTDVVIVGAGSAGLSCAYELSKN-----PNVKVAIIEQSVSP 128 (357)
T ss_pred cccCCEEEECCHHHHHHHHHHHHHc-----CCCeEEEEecCccc
Confidence 3457999999999999999999972 48999999998754
No 250
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.00 E-value=2.9e-05 Score=83.67 Aligned_cols=103 Identities=15% Similarity=0.135 Sum_probs=69.1
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHH-hccCCcEEEEe
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADL-LANTGVQFFKD 157 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~v~~~~~ 157 (500)
+++|+|||||+.|++.|..|++ .|.+|+|+|+.+++. + ..+ .++...+.+. +++.+|+++.+
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~------~G~eVTLIe~~~~ll---------~-~~d-~eis~~l~~~ll~~~GV~I~~~ 374 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTA------LGSEVVSFEYSPQLL---------P-LLD-ADVAKYFERVFLKSKPVRVHLN 374 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHh------CCCeEEEEeccCccc---------c-cCC-HHHHHHHHHHHhhcCCcEEEcC
Confidence 4689999999999999999988 578999999987631 1 111 1223333443 35678999886
Q ss_pred -eEEEEecCCCCCCCCCceeecCcEEEcC---------------CccEEEecEEEEeCCCCCCCCC
Q 010827 158 -RVKLLCPSDHLGVNGPMACTHGGTVLLE---------------SGLIVEYDWLVLSLGAEPKLDV 207 (500)
Q Consensus 158 -~v~~i~~~~~~~~~~~~~~~~~~~v~~~---------------~g~~~~~d~lIlAtG~~p~~~~ 207 (500)
.|..++..... ..+ .+... +.+.+.+|.|++|+|.+|+...
T Consensus 375 ~~V~~I~~~~~~----~~v-----~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~ 431 (659)
T PTZ00153 375 TLIEYVRAGKGN----QPV-----IIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNN 431 (659)
T ss_pred CEEEEEEecCCc----eEE-----EEEEeccccccccccccccccceEEEcCEEEEEECcccCCcc
Confidence 78888654320 001 12111 1137999999999999987643
No 251
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.00 E-value=3.8e-05 Score=78.28 Aligned_cols=39 Identities=33% Similarity=0.502 Sum_probs=33.7
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCccc
Q 010827 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF 122 (500)
Q Consensus 80 ~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~ 122 (500)
++|+|||||.+||+||++|++.+ +..+++|+|+.++.+.
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~----p~~~i~lfE~~~r~GG 39 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAG----PDVEVTLFEADDRVGG 39 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhC----CCCcEEEEecCCCCCc
Confidence 47999999999999999999942 4599999999987554
No 252
>PLN02529 lysine-specific histone demethylase 1
Probab=98.00 E-value=5e-06 Score=90.08 Aligned_cols=59 Identities=19% Similarity=0.178 Sum_probs=46.7
Q ss_pred HHHhhhccccccccccccccccCCCCCCCCCCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCc
Q 010827 47 FAASNSSGRNGDLVVTSEDESASQTYTWPDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP 124 (500)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~ 124 (500)
.+.|.+||..+... .+....++|+|||||++||+||..|++ +|++|+|+|++++.+.+.
T Consensus 141 ~inc~vnp~~~~~~-------------~~~~~~~~v~viGaG~aGl~aA~~l~~------~g~~v~v~E~~~~~GG~~ 199 (738)
T PLN02529 141 YINFGVSPSFASPI-------------PEEGTEGSVIIVGAGLAGLAAARQLLS------FGFKVVVLEGRNRPGGRV 199 (738)
T ss_pred CcceeecccccCCC-------------CcccCCCCEEEECcCHHHHHHHHHHHH------cCCcEEEEecCccCcCce
Confidence 45788888766511 223456899999999999999999998 799999999998865543
No 253
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.99 E-value=3.4e-05 Score=80.88 Aligned_cols=99 Identities=18% Similarity=0.224 Sum_probs=69.2
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEEe-
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (500)
+++++|||||+.|+++|..|++ .|.+|+|+++. .+ +. ..+ .++...+.+.+++.+++++.+
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~------~G~~Vtli~~~-~~---------l~-~~d-~~~~~~l~~~L~~~gV~i~~~~ 241 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAG------IGLDVTVMVRS-IL---------LR-GFD-QDCANKVGEHMEEHGVKFKRQF 241 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHH------hCCcEEEEEec-cc---------cc-ccC-HHHHHHHHHHHHHcCCEEEeCc
Confidence 4689999999999999999998 58899999874 21 11 111 223345566777889999986
Q ss_pred eEEEEecCCCCCCCCCceeecCcEEEcCCc---cEEEecEEEEeCCCCCCCC
Q 010827 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESG---LIVEYDWLVLSLGAEPKLD 206 (500)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g---~~~~~d~lIlAtG~~p~~~ 206 (500)
.+..+...... ..+...++ .++.+|.|++|+|..|+..
T Consensus 242 ~v~~v~~~~~~-----------~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~ 282 (484)
T TIGR01438 242 VPIKVEQIEAK-----------VKVTFTDSTNGIEEEYDTVLLAIGRDACTR 282 (484)
T ss_pred eEEEEEEcCCe-----------EEEEEecCCcceEEEeCEEEEEecCCcCCC
Confidence 56666543220 12433333 3799999999999988754
No 254
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.98 E-value=0.00012 Score=73.24 Aligned_cols=44 Identities=25% Similarity=0.414 Sum_probs=38.8
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcch
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPML 126 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~ 126 (500)
....+|+|||+|.+||.+|+.|.+ .|++|+|+|.+++++.+...
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~k------aG~~v~ilEar~r~GGR~~t 48 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKK------AGYQVQILEARDRVGGRSLT 48 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhh------cCcEEEEEeccCCcCceeEE
Confidence 455899999999999999999999 79999999999998776543
No 255
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.98 E-value=0.00029 Score=70.33 Aligned_cols=73 Identities=16% Similarity=0.027 Sum_probs=55.9
Q ss_pred cCCccCCCCCcchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCc
Q 010827 278 VETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLES 357 (500)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~ 357 (500)
+.+++..+.-+...+.+.+.+++.|++|+++++|.+++.++... ..+.+ .++
T Consensus 163 ~~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~--------------------~~v~~--------~~g 214 (486)
T COG2509 163 YQRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEV--------------------LGVKL--------TKG 214 (486)
T ss_pred cccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCce--------------------EEEEc--------cCC
Confidence 34566666677888999999999999999999999998765211 12222 388
Q ss_pred cEEeecEEEEecCCCCCCCCCC
Q 010827 358 QIFEADLVLWTVGSKPLLPHVE 379 (500)
Q Consensus 358 ~~l~~D~vi~a~G~~p~~~~~~ 379 (500)
.++++|.||+|+|+... +|+.
T Consensus 215 ~~i~~~~vvlA~Grsg~-dw~~ 235 (486)
T COG2509 215 EEIEADYVVLAPGRSGR-DWFE 235 (486)
T ss_pred cEEecCEEEEccCcchH-HHHH
Confidence 89999999999999876 4443
No 256
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=97.97 E-value=3.1e-05 Score=82.51 Aligned_cols=34 Identities=24% Similarity=0.403 Sum_probs=32.1
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (500)
.+||+|||||..|+++|+.|++ +|++|+|||+++
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~------rG~~V~LlEk~d 39 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCAL------RGLRCILVERHD 39 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHH------cCCeEEEEECCC
Confidence 4899999999999999999999 799999999976
No 257
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.96 E-value=3.7e-05 Score=82.50 Aligned_cols=58 Identities=12% Similarity=0.071 Sum_probs=39.9
Q ss_pred CCceEeCCCcccC-----CCCCEEEecccccc-cCCCCCCCCchHHHHHHHHHHHHHHHHHHHC
Q 010827 393 RGQAETDETLCVK-----GHPRIFALGDSSAL-RDSSGRPLPATAQVAFQQADFAGWNLWAAIN 450 (500)
Q Consensus 393 ~g~i~vd~~~~t~-----~~~~vyaiGD~~~~-~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 450 (500)
.|.|.||...|+. +.|++||+|+|+.. .....+.-......++-.|+.+++++...+.
T Consensus 351 ~GGi~vd~~~~~~~~~~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~ 414 (575)
T PRK05945 351 MGGIPVNTDGRVRRSADGLVEGFFAAGECACVSVHGANRLGSNSLLECVVYGRRTGAAIAEYVQ 414 (575)
T ss_pred CCCeeECCCceeccCCCCccCCeEeeeccccccccccccccchhHHHHHHHHHHHHHHHHHHhh
Confidence 4667787766652 58999999999752 1111111134567888999999999987664
No 258
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=97.96 E-value=1.8e-05 Score=82.42 Aligned_cols=42 Identities=14% Similarity=0.245 Sum_probs=35.3
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCccc
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF 122 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~ 122 (500)
...+||||||||.+|+++|..|+++ .++.+|+|+|+.+...+
T Consensus 4 ~~~~DvvIIGgGI~G~sla~~L~~~----~~~~~V~vlEr~~~~a~ 45 (497)
T PRK13339 4 SESKDVVLVGAGILSTTFGVLLKEL----DPDWNIEVVERLDSPAI 45 (497)
T ss_pred CccCCEEEECchHHHHHHHHHHHhC----CCCCeEEEEEcCCCcch
Confidence 4457999999999999999999994 36899999999555444
No 259
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.96 E-value=8.4e-06 Score=84.84 Aligned_cols=44 Identities=25% Similarity=0.403 Sum_probs=38.7
Q ss_pred CCCCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCc
Q 010827 75 PDKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP 124 (500)
Q Consensus 75 ~~~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~ 124 (500)
....+++|+|||||+|||+||+.|.+ .|++|+|+|..++.+++.
T Consensus 11 ~~~~~~~VIVIGAGiaGLsAArqL~~------~G~~V~VLEARdRvGGRI 54 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGLSAARQLQD------FGFDVLVLEARDRVGGRI 54 (501)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHH------cCCceEEEeccCCcCcee
Confidence 34567899999999999999999999 588999999999876654
No 260
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=97.96 E-value=3.3e-05 Score=71.09 Aligned_cols=93 Identities=18% Similarity=0.243 Sum_probs=61.7
Q ss_pred EEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCC--------------C----------C---C-------------
Q 010827 248 AVVGCGYSGVELAATVSERLEEKGIVQAINVETTICP--------------T----------G---T------------- 287 (500)
Q Consensus 248 ~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~--------------~----------~---~------------- 287 (500)
+|||+|++|+-+|..|.+.+.+. ++++++.+.+.. . + .
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~--v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDP--VVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDF 78 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT-----EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSS
T ss_pred CEECcCHHHHHHHHHHHhCCCCc--EEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCccc
Confidence 69999999999999998887642 899998644321 0 0 0
Q ss_pred ---cchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccEEeecE
Q 010827 288 ---PGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADL 364 (500)
Q Consensus 288 ---~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~~D~ 364 (500)
+++.++++...++.++++..+++|+++..++ ++..+++. +++++.+|.
T Consensus 79 ~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~-----------------------~~w~v~~~------~~~~~~a~~ 129 (203)
T PF13738_consen 79 PSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDG-----------------------DGWTVTTR------DGRTIRADR 129 (203)
T ss_dssp EBHHHHHHHHHHHHHHTTGGEETS--EEEEEEET-----------------------TTEEEEET------TS-EEEEEE
T ss_pred CCHHHHHHHHHHHHhhcCcccccCCEEEEEEEec-----------------------cEEEEEEE------ecceeeeee
Confidence 1233556677788899999999999999876 55777653 457889999
Q ss_pred EEEecCC
Q 010827 365 VLWTVGS 371 (500)
Q Consensus 365 vi~a~G~ 371 (500)
||+|+|.
T Consensus 130 VVlAtG~ 136 (203)
T PF13738_consen 130 VVLATGH 136 (203)
T ss_dssp EEE---S
T ss_pred EEEeeec
Confidence 9999996
No 261
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.93 E-value=8.8e-05 Score=77.10 Aligned_cols=139 Identities=17% Similarity=0.140 Sum_probs=87.1
Q ss_pred ccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCC---------------------------------------
Q 010827 244 LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICP--------------------------------------- 284 (500)
Q Consensus 244 ~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~--------------------------------------- 284 (500)
.++|+|||+|++|+-+|..|.+.+.+ ++++++.+.+..
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~---v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m 86 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHT---VVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECM 86 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCe---EEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhc
Confidence 58999999999999999999988765 888887543210
Q ss_pred ---CCC------------------cchHHHHHHHHHhCCcE--EEcCceEEEEecCccccccccCCCCCcccccccccCC
Q 010827 285 ---TGT------------------PGNREAALKVLSARKVQ--LVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNS 341 (500)
Q Consensus 285 ---~~~------------------~~~~~~~~~~l~~~gV~--i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (500)
+++ .++.+++++..++.|+. +..+++|++|+..+
T Consensus 87 ~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~----------------------- 143 (461)
T PLN02172 87 GYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD----------------------- 143 (461)
T ss_pred cCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC-----------------------
Confidence 010 12445556666778888 88999999998754
Q ss_pred cceeEeecccccCCCccEEeecEEEEecC--CCCCCCCCCCCCCccCCCCCCCCCceEeCCCcccC---CCCCEEEeccc
Q 010827 342 DKYILELQPAIKGLESQIFEADLVLWTVG--SKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVK---GHPRIFALGDS 416 (500)
Q Consensus 342 ~~v~l~~~~~~~~~~~~~l~~D~vi~a~G--~~p~~~~~~~~~~~~~~~~~~~~g~i~vd~~~~t~---~~~~vyaiGD~ 416 (500)
++..+...+ .++...+..+|.||+|+| ..|+.+-++. ++. -.|.+..-..++.. ..++|-++|-.
T Consensus 144 ~~w~V~~~~--~~~~~~~~~~d~VIvAtG~~~~P~~P~ipG-------~~~-f~G~~iHs~~yr~~~~~~gk~VvVVG~G 213 (461)
T PLN02172 144 GKWRVQSKN--SGGFSKDEIFDAVVVCNGHYTEPNVAHIPG-------IKS-WPGKQIHSHNYRVPDPFKNEVVVVIGNF 213 (461)
T ss_pred CeEEEEEEc--CCCceEEEEcCEEEEeccCCCCCcCCCCCC-------ccc-CCceEEEecccCCccccCCCEEEEECCC
Confidence 455555431 111223567999999999 4566544332 211 12333332333321 34678888865
Q ss_pred cc
Q 010827 417 SA 418 (500)
Q Consensus 417 ~~ 418 (500)
.+
T Consensus 214 ~S 215 (461)
T PLN02172 214 AS 215 (461)
T ss_pred cC
Confidence 54
No 262
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.92 E-value=3.8e-05 Score=79.69 Aligned_cols=36 Identities=36% Similarity=0.403 Sum_probs=30.0
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCC
Q 010827 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQS 117 (500)
Q Consensus 80 ~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~ 117 (500)
+||+||||||+|+++|..|++... ..|++|+|||+.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~--~~G~~v~viE~~ 36 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPL--TKDLKVLLLDAV 36 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcc--cCCCeEEEEeCC
Confidence 589999999999999999987210 048999999994
No 263
>PLN02546 glutathione reductase
Probab=97.92 E-value=5.3e-05 Score=80.45 Aligned_cols=101 Identities=17% Similarity=0.281 Sum_probs=70.4
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEEe-
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (500)
.++|+|||||+.|+++|..|++ .|.+|+|+++.+.+. ... ..++...+.+.+++.+|+++.+
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~------~g~~Vtlv~~~~~il----------~~~-d~~~~~~l~~~L~~~GV~i~~~~ 314 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNG------LKSDVHVFIRQKKVL----------RGF-DEEVRDFVAEQMSLRGIEFHTEE 314 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHh------cCCeEEEEEeccccc----------ccc-CHHHHHHHHHHHHHCCcEEEeCC
Confidence 5799999999999999999988 578999999876521 111 1223344556777889999986
Q ss_pred eEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCCCCC
Q 010827 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLD 206 (500)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p~~~ 206 (500)
.+..+.....- . ..+..+++....+|.||+|+|.+|+..
T Consensus 315 ~v~~i~~~~~g-----~-----v~v~~~~g~~~~~D~Viva~G~~Pnt~ 353 (558)
T PLN02546 315 SPQAIIKSADG-----S-----LSLKTNKGTVEGFSHVMFATGRKPNTK 353 (558)
T ss_pred EEEEEEEcCCC-----E-----EEEEECCeEEEecCEEEEeeccccCCC
Confidence 77777542210 0 123344444455899999999998754
No 264
>PRK06847 hypothetical protein; Provisional
Probab=97.91 E-value=0.00011 Score=74.73 Aligned_cols=99 Identities=18% Similarity=0.177 Sum_probs=71.9
Q ss_pred ccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCC--------------------------------------
Q 010827 244 LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPT-------------------------------------- 285 (500)
Q Consensus 244 ~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~-------------------------------------- 285 (500)
.++|+|||+|+.|+-+|..|++.+.+ |+++++...+...
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~---v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~ 80 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIA---VDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDP 80 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCC---EEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECC
Confidence 46999999999999999999987766 8888875421100
Q ss_pred -------C----------C-------cchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCC
Q 010827 286 -------G----------T-------PGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNS 341 (500)
Q Consensus 286 -------~----------~-------~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (500)
+ + ..+.+.+.+.+.+.|++++.++.+++++.++
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~----------------------- 137 (375)
T PRK06847 81 DGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDD----------------------- 137 (375)
T ss_pred CCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcC-----------------------
Confidence 0 0 1223445555667789999999999887654
Q ss_pred cceeEeecccccCCCccEEeecEEEEecCCCCC
Q 010827 342 DKYILELQPAIKGLESQIFEADLVLWTVGSKPL 374 (500)
Q Consensus 342 ~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~p~ 374 (500)
+.+.+.+. +++++.+|.||.|.|..+.
T Consensus 138 ~~~~v~~~------~g~~~~ad~vI~AdG~~s~ 164 (375)
T PRK06847 138 DGVTVTFS------DGTTGRYDLVVGADGLYSK 164 (375)
T ss_pred CEEEEEEc------CCCEEEcCEEEECcCCCcc
Confidence 45555543 5678999999999998765
No 265
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=97.90 E-value=0.00023 Score=74.51 Aligned_cols=36 Identities=14% Similarity=0.331 Sum_probs=32.1
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCC
Q 010827 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (500)
Q Consensus 80 ~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (500)
.||+|||||.+|+++|++|++. .+|.+|+|+|+.+.
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~----~~g~~V~VlEk~~~ 36 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLREL----EPNWSITLIERLDA 36 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHh----CCCCeEEEEEcCCc
Confidence 4899999999999999999994 26899999999764
No 266
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=97.90 E-value=6e-05 Score=77.52 Aligned_cols=36 Identities=28% Similarity=0.313 Sum_probs=31.2
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCC-eEEEEcCCC
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSE 118 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~-~V~lie~~~ 118 (500)
..+||+|||||.+|+++|++|++. .|. +|+|+|+..
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~-----~g~~~V~vle~~~ 65 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKE-----HGITNVAVLEKGW 65 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHh-----cCCCeEEEEEccc
Confidence 458999999999999999999982 274 999999974
No 267
>PRK06175 L-aspartate oxidase; Provisional
Probab=97.87 E-value=6.1e-05 Score=77.89 Aligned_cols=58 Identities=12% Similarity=0.097 Sum_probs=42.0
Q ss_pred CCCceEeCCCcccCCCCCEEEeccccc-ccCCCCCCCCchHHHHHHHHHHHHHHHHHHHC
Q 010827 392 ARGQAETDETLCVKGHPRIFALGDSSA-LRDSSGRPLPATAQVAFQQADFAGWNLWAAIN 450 (500)
Q Consensus 392 ~~g~i~vd~~~~t~~~~~vyaiGD~~~-~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 450 (500)
-.|.|.||...|+ ..|++||+|.|+. ......+........+.--|+.|++++...+.
T Consensus 330 t~GGi~vd~~~~t-~i~gLYAaGE~a~~g~hG~nrl~gnsl~~~lvfGr~Ag~~a~~~~~ 388 (433)
T PRK06175 330 FMGGIKVDLNSKT-SMKNLYAFGEVSCTGVHGANRLASNSLLEGLVFSKRGAEKINSEID 388 (433)
T ss_pred ecCCEEECCCccc-cCCCeEecccccccCCCccccchhHHHHHHHHHHHHHHHHHHHhhh
Confidence 3577999999998 8999999999974 21111111134567888999999999977654
No 268
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=97.87 E-value=7.3e-05 Score=77.70 Aligned_cols=33 Identities=27% Similarity=0.558 Sum_probs=30.6
Q ss_pred eEEEECCcHHHHHHHHHhhhcccCCCCC-CeEEEEcCCCC
Q 010827 81 RICILGGGFGGLYTALRLESLVWQDDKK-PQVLLVDQSER 119 (500)
Q Consensus 81 ~VvIIGgG~AGl~aA~~L~~~~~~~~~g-~~V~lie~~~~ 119 (500)
||||||+|.||++||..+++ .| .+|+|+||.+.
T Consensus 1 DVvVVG~G~AGl~AA~~aa~------~G~~~V~vlEk~~~ 34 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKK------AGAANVVLLEKMPV 34 (439)
T ss_pred CEEEECCCHHHHHHHHHHHH------cCCccEEEEecCCC
Confidence 69999999999999999999 68 89999999863
No 269
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.87 E-value=4.2e-05 Score=85.90 Aligned_cols=67 Identities=16% Similarity=0.070 Sum_probs=52.8
Q ss_pred CCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCC---------CCcchHHHHHHHHHhCCcEEEcCceE
Q 010827 242 DSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPT---------GTPGNREAALKVLSARKVQLVLGYFV 311 (500)
Q Consensus 242 ~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~---------~~~~~~~~~~~~l~~~gV~i~~~~~v 311 (500)
..+|+|+|||+|+.|+.+|..|++.+.+ ||++++.+.+... ++..+.+...+.+++.||+|++++.+
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~---VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~v 379 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFP---VTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVV 379 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCe---EEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEe
Confidence 3479999999999999999999998877 9999987654321 23345555667788899999998654
No 270
>PRK10262 thioredoxin reductase; Provisional
Probab=97.86 E-value=0.00016 Score=71.83 Aligned_cols=100 Identities=12% Similarity=0.148 Sum_probs=67.7
Q ss_pred CccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCc---c--------CCCC-----CcchHHHHHHHHHhCCcEEE
Q 010827 243 SLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETT---I--------CPTG-----TPGNREAALKVLSARKVQLV 306 (500)
Q Consensus 243 ~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~---~--------~~~~-----~~~~~~~~~~~l~~~gV~i~ 306 (500)
+.++|+|||+|+.|+.+|..+++++.+ +++++.... + .+.. .+.+.+.+.+.....++++.
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~---~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQ---PVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEII 81 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCC---eEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence 367999999999999999999988765 777763211 0 0111 12235566677777788877
Q ss_pred cCceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccEEeecEEEEecCCCCCCC
Q 010827 307 LGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLP 376 (500)
Q Consensus 307 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~p~~~ 376 (500)
.+ .+..++... +.+.+.. +...+.+|.||+|+|..|..+
T Consensus 82 ~~-~v~~v~~~~-----------------------~~~~v~~-------~~~~~~~d~vilAtG~~~~~~ 120 (321)
T PRK10262 82 FD-HINKVDLQN-----------------------RPFRLTG-------DSGEYTCDALIIATGASARYL 120 (321)
T ss_pred ee-EEEEEEecC-----------------------CeEEEEe-------cCCEEEECEEEECCCCCCCCC
Confidence 65 456665533 4455542 234689999999999998643
No 271
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=97.85 E-value=6.5e-05 Score=80.66 Aligned_cols=58 Identities=17% Similarity=0.033 Sum_probs=41.8
Q ss_pred CCCceEeCCCcc----cCCCCCEEEecccccc-cCCCCCCCCchHHHHHHHHHHHHHHHHHHHC
Q 010827 392 ARGQAETDETLC----VKGHPRIFALGDSSAL-RDSSGRPLPATAQVAFQQADFAGWNLWAAIN 450 (500)
Q Consensus 392 ~~g~i~vd~~~~----t~~~~~vyaiGD~~~~-~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 450 (500)
-.|.+.||...| | +.|++||+|+|+.. .....+........|+..|+.|++++...+.
T Consensus 341 t~GGi~id~~~~v~~~t-~I~GLyAaGe~a~~g~hGa~rl~g~sl~~a~v~G~~Ag~~aa~~~~ 403 (566)
T TIGR01812 341 SMGGIPTDYTGRVICET-IVKGLFAAGECACVSVHGANRLGGNSLLELVVFGRIAGEAAAEYAA 403 (566)
T ss_pred cCCCeEECcCcccccCc-ccCCeeecccccccCcCcccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 357788888888 7 89999999999752 1111111135677899999999999987664
No 272
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.82 E-value=0.00073 Score=69.69 Aligned_cols=41 Identities=15% Similarity=0.153 Sum_probs=36.5
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCc
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP 124 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~ 124 (500)
..+||+|||+|.+|+.+|..|++ .|.+|+++|++++++...
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~------~GkkVLhlD~n~~yGG~~ 43 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSV------NGKKVLHMDRNPYYGGES 43 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhh------CCCEEEEecCCCCcCccc
Confidence 45899999999999999999999 799999999999865543
No 273
>PTZ00367 squalene epoxidase; Provisional
Probab=97.81 E-value=0.00011 Score=78.06 Aligned_cols=35 Identities=23% Similarity=0.370 Sum_probs=32.3
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (500)
..+||+|||||++|+++|..|++ .|++|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar------~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSK------QGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHh------cCCEEEEEcccc
Confidence 45899999999999999999999 799999999975
No 274
>PRK07236 hypothetical protein; Provisional
Probab=97.81 E-value=0.00018 Score=73.39 Aligned_cols=36 Identities=19% Similarity=0.121 Sum_probs=32.0
Q ss_pred ccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCcc
Q 010827 244 LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTI 282 (500)
Q Consensus 244 ~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~ 282 (500)
..+|+|||||.+|+.+|..|++.+.+ |+++++.+..
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~---v~v~E~~~~~ 41 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWD---VDVFERSPTE 41 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCC---EEEEecCCCC
Confidence 56999999999999999999998776 9999987643
No 275
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.79 E-value=2.2e-05 Score=82.40 Aligned_cols=41 Identities=20% Similarity=0.343 Sum_probs=36.5
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCc
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP 124 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~ 124 (500)
..+||||||||++||.||..|++ +|++|+|+||++..+...
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~------~G~~V~VlE~~~~~GG~a 42 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLAR------AGLKVTVLEKNDRVGGRA 42 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHh------CCCEEEEEEecCCCCcce
Confidence 35899999999999999999999 799999999998765544
No 276
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=97.78 E-value=3e-05 Score=75.92 Aligned_cols=49 Identities=24% Similarity=0.403 Sum_probs=40.7
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcc
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPM 125 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~ 125 (500)
....||+|||||||||+||++|.++-...+..++|+++||....+.+..
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Gghtl 122 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTL 122 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCcee
Confidence 3458999999999999999999887554567899999999988665543
No 277
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.78 E-value=0.0001 Score=82.05 Aligned_cols=66 Identities=20% Similarity=0.192 Sum_probs=51.2
Q ss_pred CccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCC---------CCcchHHHHHHHHHhCCcEEEcCceE
Q 010827 243 SLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPT---------GTPGNREAALKVLSARKVQLVLGYFV 311 (500)
Q Consensus 243 ~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~---------~~~~~~~~~~~~l~~~gV~i~~~~~v 311 (500)
.+|+|+|||+|+.|+.+|..|++.+.+ |+++++.+.+... .+.+......+.+++.||+|+.++.+
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~---VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V 612 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHP---VTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP 612 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCe---EEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee
Confidence 478999999999999999999998876 9999987654322 12233444456778899999999776
No 278
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.77 E-value=0.00017 Score=78.12 Aligned_cols=51 Identities=16% Similarity=0.142 Sum_probs=36.7
Q ss_pred CCceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHH
Q 010827 393 RGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWN 444 (500)
Q Consensus 393 ~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~ 444 (500)
-|.|.||...+| +.|++||+|+|+......-+.-......+.-.|+.++..
T Consensus 406 ~GGi~vd~~~~T-~i~GLyAaGE~~~g~HGanRL~~nsL~e~lv~G~~ag~~ 456 (640)
T PRK07573 406 MGGLWVDYNLMS-TIPGLFVIGEANFSDHGANRLGASALMQGLADGYFVLPY 456 (640)
T ss_pred cCCEEECCCCcc-ccCCEEECccccccCCCcccccchhHHHHHHHHHHHhHH
Confidence 378999999999 999999999997542211111134566788888888766
No 279
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.76 E-value=2.7e-05 Score=71.48 Aligned_cols=149 Identities=19% Similarity=0.226 Sum_probs=100.1
Q ss_pred EEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCC---CC-----------cchH--H--HHHHHHHhCCcEEEc
Q 010827 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPT---GT-----------PGNR--E--AALKVLSARKVQLVL 307 (500)
Q Consensus 246 ~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~---~~-----------~~~~--~--~~~~~l~~~gV~i~~ 307 (500)
+|+|||||+.|+.+|..|++.+.+ +++++..+..... .. .... . .+.+.+...+++++.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~---v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 77 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAK---VLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRL 77 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSE---EEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCe---EEEEecccccccccccccccccccccccccccccccccccccccccceEEEee
Confidence 689999999999999999965555 9999765432110 00 0000 1 334455778999999
Q ss_pred CceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccEEeecEEEEecCCCCCCCCCCCC------
Q 010827 308 GYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEPP------ 381 (500)
Q Consensus 308 ~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~p~~~~~~~~------ 381 (500)
+..+.+++...... ....+.+... ..+++.++.+|.+|+|+|..|..+.++..
T Consensus 78 ~~~v~~i~~~~~~~------------------~~~~~~~~~~---~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~ 136 (201)
T PF07992_consen 78 NAKVVSIDPESKRV------------------VCPAVTIQVV---ETGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFL 136 (201)
T ss_dssp HHTEEEEEESTTEE------------------EETCEEEEEE---ETTTEEEEEEEEEEEESTEEEEEESSTTTTTECBT
T ss_pred cccccccccccccc------------------ccCcccceee---ccCCceEecCCeeeecCccccceeecCCCcccccc
Confidence 99999997754200 0011122110 22377899999999999988663332221
Q ss_pred -------------C------------C-ccCCCCCCCCCceEeCCCcccCCCCCEEEecccccc
Q 010827 382 -------------N------------N-RLHDLPLNARGQAETDETLCVKGHPRIFALGDSSAL 419 (500)
Q Consensus 382 -------------~------------~-~~~~~~~~~~g~i~vd~~~~t~~~~~vyaiGD~~~~ 419 (500)
. + +..+++++++|++.||+.+|+ +.|+||++|||+..
T Consensus 137 ~~~~~~~~~~~~~~~~~~v~VvG~~~l~~~~~~~~~~~g~i~vd~~~~t-~~~~Iya~GD~a~~ 199 (201)
T PF07992_consen 137 RGVDDAQRFLELLESPKRVAVVGTEFLAEKLGVELDENGFIKVDENLQT-SVPGIYAAGDCAGI 199 (201)
T ss_dssp TSEEHHHHHHTHSSTTSEEEEESTTTSTHHTTSTBTTTSSBEEBTTSBB-SSTTEEE-GGGBEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccc
Confidence 0 0 234677889999999999999 89999999999985
No 280
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=97.75 E-value=0.00017 Score=70.24 Aligned_cols=97 Identities=19% Similarity=0.152 Sum_probs=71.5
Q ss_pred EEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCC----------------------------------------
Q 010827 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPT---------------------------------------- 285 (500)
Q Consensus 246 ~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~---------------------------------------- 285 (500)
.|+|||+|++|+-+|..|++.+.+ |+++++.......
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~---v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLR---VLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEI 78 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCe---EEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEe
Confidence 699999999999999999987766 9999987542110
Q ss_pred -C---------CcchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCC
Q 010827 286 -G---------TPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGL 355 (500)
Q Consensus 286 -~---------~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~ 355 (500)
. ...+.+.+.+.+++.|++++.+++++++..++ +.+.+.+. +
T Consensus 79 ~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~-----------------------~~~~~~~~-----~ 130 (295)
T TIGR02032 79 PIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHD-----------------------DRVVVIVR-----G 130 (295)
T ss_pred ccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeC-----------------------CEEEEEEc-----C
Confidence 0 01234556677778899999999999987654 44444432 2
Q ss_pred CccEEeecEEEEecCCCC
Q 010827 356 ESQIFEADLVLWTVGSKP 373 (500)
Q Consensus 356 ~~~~l~~D~vi~a~G~~p 373 (500)
++.++.+|.||.|+|...
T Consensus 131 ~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 131 GEGTVTAKIVIGADGSRS 148 (295)
T ss_pred ccEEEEeCEEEECCCcch
Confidence 456899999999999764
No 281
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.73 E-value=0.00014 Score=77.89 Aligned_cols=60 Identities=10% Similarity=0.069 Sum_probs=43.1
Q ss_pred CCCceEeCCCcccCCCCCEEEeccccc-ccCCCCCCCCchHHHHHHHHHHHHHHHHHHHCC
Q 010827 392 ARGQAETDETLCVKGHPRIFALGDSSA-LRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 451 (500)
Q Consensus 392 ~~g~i~vd~~~~t~~~~~vyaiGD~~~-~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 451 (500)
-.|.|.||...++++.|++||+|+|+. ......+........++..|+.+++++...+..
T Consensus 345 ~~GGi~vd~~~~t~~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~~ 405 (566)
T PRK06452 345 YMGGIDVDIDGRNPDIVGLFSAGEAACVSVHGANRLGSNSLLDTLVFGQVTGRTVVQFLKS 405 (566)
T ss_pred ecCCeEECCCCCcCCcCCeEecccccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 357799998888834999999999975 211111112346678899999999999877643
No 282
>PRK07208 hypothetical protein; Provisional
Probab=97.72 E-value=3.6e-05 Score=80.92 Aligned_cols=41 Identities=22% Similarity=0.254 Sum_probs=36.6
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccC
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFK 123 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~ 123 (500)
+++++|+|||||++||+||+.|++ +|++|+|+|++++++..
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~------~g~~v~v~E~~~~~GG~ 42 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLK------RGYPVTVLEADPVVGGI 42 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHH------CCCcEEEEecCCCCCce
Confidence 456899999999999999999998 69999999999987654
No 283
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.72 E-value=7.6e-05 Score=77.94 Aligned_cols=66 Identities=18% Similarity=0.183 Sum_probs=52.3
Q ss_pred CccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccC-------CC--CCcchHHHHHHHHHhCCcEEEcCceE
Q 010827 243 SLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTIC-------PT--GTPGNREAALKVLSARKVQLVLGYFV 311 (500)
Q Consensus 243 ~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~-------~~--~~~~~~~~~~~~l~~~gV~i~~~~~v 311 (500)
.+++|+|||+|+.|+++|..|++.+.+ |+++++.+.+. +. .+..+.....+.+++.||+++.++.+
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~---V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v 213 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYD---VTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEV 213 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCe---EEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEE
Confidence 368999999999999999999987765 99999876552 11 23455566677888899999998765
No 284
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.71 E-value=0.00011 Score=79.50 Aligned_cols=58 Identities=19% Similarity=0.135 Sum_probs=41.0
Q ss_pred CCceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHC
Q 010827 393 RGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIN 450 (500)
Q Consensus 393 ~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 450 (500)
-|.|.+|...+.++.|++||+|+|+.......+.-......|+..|+.+++++...+.
T Consensus 391 ~GGi~vd~~~~~t~IpGLYAaGE~agg~hGanrl~gnsl~~a~v~Gr~Ag~~aa~~~~ 448 (626)
T PRK07803 391 MGGVEVDPDTGAATVPGLFAAGECAGGMHGSNRLGGNSLSDLLVFGRRAGLGAADYVR 448 (626)
T ss_pred cCCEEEcCCCCeeecCCeeEccccccccCcCccccchhHHHHHHHHHHHHHHHHHHhh
Confidence 4778999775423899999999997642211111134667888999999999887664
No 285
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.71 E-value=3.2e-05 Score=80.60 Aligned_cols=41 Identities=32% Similarity=0.510 Sum_probs=34.5
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCc
Q 010827 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP 124 (500)
Q Consensus 80 ~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~ 124 (500)
++|+|||||+|||+||+.|++.+ .+++|+|+|+++++++..
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G----~~~~V~vlEa~~~~GGr~ 41 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKG----PDADITLLEASDRLGGKI 41 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhC----CCCCEEEEEcCCCCcceE
Confidence 47999999999999999999832 238999999999876543
No 286
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=97.70 E-value=0.00035 Score=75.08 Aligned_cols=40 Identities=25% Similarity=0.306 Sum_probs=34.5
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccC
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFK 123 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~ 123 (500)
...||||||+|++|++||..+++ .|++|+|+|+.+.....
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~------~g~~v~l~ek~~~~gg~ 54 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAI------AGLKVLLVERTEYVGGT 54 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHH------CCCcEEEEecCCCCCCc
Confidence 35799999999999999999998 68999999998764443
No 287
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.70 E-value=0.00013 Score=73.37 Aligned_cols=69 Identities=19% Similarity=0.087 Sum_probs=51.7
Q ss_pred ccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCCC---------CcchHHHHHHHHHhCCcEEEcCceEEEE
Q 010827 244 LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTG---------TPGNREAALKVLSARKVQLVLGYFVRCI 314 (500)
Q Consensus 244 ~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~~---------~~~~~~~~~~~l~~~gV~i~~~~~v~~i 314 (500)
+++|+|||+|+.|+++|..|++.+.+ |+++++.+.+...+ +........+.+.+.|+++..++.+..+
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~~ 94 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYE---VHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCCG 94 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCc---EEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEeec
Confidence 78999999999999999999987766 99999977654211 1122233455677779999999887655
Q ss_pred e
Q 010827 315 R 315 (500)
Q Consensus 315 ~ 315 (500)
.
T Consensus 95 ~ 95 (352)
T PRK12770 95 E 95 (352)
T ss_pred c
Confidence 3
No 288
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.70 E-value=4.7e-05 Score=83.10 Aligned_cols=43 Identities=21% Similarity=0.295 Sum_probs=37.4
Q ss_pred CCCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCc
Q 010827 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP 124 (500)
Q Consensus 76 ~~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~ 124 (500)
....++|+|||||++||+||+.|.+ .|++|+|+|++++++.+.
T Consensus 235 ~~~~~~v~IiGaG~aGl~aA~~L~~------~g~~v~v~E~~~r~GGr~ 277 (808)
T PLN02328 235 GVEPANVVVVGAGLAGLVAARQLLS------MGFKVVVLEGRARPGGRV 277 (808)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHHH------CCCcEEEEeccccCCCcc
Confidence 3456899999999999999999988 799999999998866543
No 289
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.70 E-value=0.00011 Score=71.53 Aligned_cols=101 Identities=23% Similarity=0.378 Sum_probs=76.3
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEEe-
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD- 157 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~- 157 (500)
+++++|||||..||+.+..-.++ |.+||++|-.++ +.+.++ .++...+.+.+.+.+++|..+
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rL------GseVT~VEf~~~----------i~~~mD-~Eisk~~qr~L~kQgikF~l~t 273 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRL------GSEVTVVEFLDQ----------IGGVMD-GEISKAFQRVLQKQGIKFKLGT 273 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhc------CCeEEEEEehhh----------hccccC-HHHHHHHHHHHHhcCceeEecc
Confidence 68999999999999999999885 789999999877 344433 345667788888899999997
Q ss_pred eEEEEecCCCCCCCCCceeecCcEEEcC-----CccEEEecEEEEeCCCCCCCC
Q 010827 158 RVKLLCPSDHLGVNGPMACTHGGTVLLE-----SGLIVEYDWLVLSLGAEPKLD 206 (500)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~-----~g~~~~~d~lIlAtG~~p~~~ 206 (500)
+|...+....- .+ .++.+ ...++++|.|.+|+|.+|+.-
T Consensus 274 kv~~a~~~~dg-----~v-----~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~ 317 (506)
T KOG1335|consen 274 KVTSATRNGDG-----PV-----EIEVENAKTGKKETLECDVLLVSIGRRPFTE 317 (506)
T ss_pred EEEEeeccCCC-----ce-----EEEEEecCCCceeEEEeeEEEEEccCccccc
Confidence 77777665431 11 22222 224799999999999998754
No 290
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=3.6e-05 Score=78.29 Aligned_cols=39 Identities=31% Similarity=0.404 Sum_probs=35.8
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCc
Q 010827 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP 124 (500)
Q Consensus 80 ~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~ 124 (500)
+||+|+|||.|||+||+.|++ +|++|||+|++++++++.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~------~g~~vt~~ea~~~~GGk~ 39 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELAD------AGYDVTLYEARDRLGGKV 39 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHh------CCCceEEEeccCccCcee
Confidence 589999999999999999999 899999999999876654
No 291
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.69 E-value=0.00014 Score=75.59 Aligned_cols=65 Identities=18% Similarity=0.140 Sum_probs=46.9
Q ss_pred ccEEEEECCChhHHHHHHHHHH--HHhhcCeEEEEecCCccCC--------CCC--cchHHHHHHHHHhCCcEEEcCceE
Q 010827 244 LIRVAVVGCGYSGVELAATVSE--RLEEKGIVQAINVETTICP--------TGT--PGNREAALKVLSARKVQLVLGYFV 311 (500)
Q Consensus 244 ~k~V~VvGgG~~g~e~A~~l~~--~~~~~~~vtlv~~~~~~~~--------~~~--~~~~~~~~~~l~~~gV~i~~~~~v 311 (500)
+++|+|||+|+.|+.+|..|++ .+.+ |+++++.+.+.. ... ......+.+.++..+|+++.+..+
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~---Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~v 102 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGAR---VDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTL 102 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCe---EEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEE
Confidence 6799999999999999999986 3444 999999876542 111 112234455677789999987655
No 292
>PRK06834 hypothetical protein; Provisional
Probab=97.69 E-value=0.00037 Score=73.25 Aligned_cols=98 Identities=15% Similarity=0.125 Sum_probs=69.6
Q ss_pred cEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccC---CC---CC-------------------------------
Q 010827 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTIC---PT---GT------------------------------- 287 (500)
Q Consensus 245 k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~---~~---~~------------------------------- 287 (500)
..|+|||+|++|+-+|..|++.+.+ |+++++.+... +. +.
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~---v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 80 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVD---VAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAAT 80 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeE
Confidence 4899999999999999999998876 99988754321 00 00
Q ss_pred -------------------cchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEee
Q 010827 288 -------------------PGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILEL 348 (500)
Q Consensus 288 -------------------~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~ 348 (500)
..+.+.+.+.+++.|++++.+++++.++.++ +++.+++
T Consensus 81 ~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~-----------------------~~v~v~~ 137 (488)
T PRK06834 81 RLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDD-----------------------TGVDVEL 137 (488)
T ss_pred ecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcC-----------------------CeEEEEE
Confidence 0111223445566788888888888887654 5566654
Q ss_pred cccccCCCccEEeecEEEEecCCCCC
Q 010827 349 QPAIKGLESQIFEADLVLWTVGSKPL 374 (500)
Q Consensus 349 ~~~~~~~~~~~l~~D~vi~a~G~~p~ 374 (500)
. ++.++.+|.||.|.|..+.
T Consensus 138 ~------~g~~i~a~~vVgADG~~S~ 157 (488)
T PRK06834 138 S------DGRTLRAQYLVGCDGGRSL 157 (488)
T ss_pred C------CCCEEEeCEEEEecCCCCC
Confidence 2 4468999999999998764
No 293
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.68 E-value=0.00013 Score=76.47 Aligned_cols=67 Identities=22% Similarity=0.256 Sum_probs=52.2
Q ss_pred CccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccC-------CC--CCcchHHHHHHHHHhCCcEEEcCceEE
Q 010827 243 SLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTIC-------PT--GTPGNREAALKVLSARKVQLVLGYFVR 312 (500)
Q Consensus 243 ~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~-------~~--~~~~~~~~~~~~l~~~gV~i~~~~~v~ 312 (500)
.+++|+|||+|+.|+.+|..|++.+.+ |+++++.+.+. +. ++........+.+++.||+++.++.+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~---V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~ 217 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHT---VTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIG 217 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCe---EEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeC
Confidence 358999999999999999999988766 99999877542 21 233455555677888999999998763
No 294
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.67 E-value=4.9e-05 Score=84.21 Aligned_cols=36 Identities=39% Similarity=0.621 Sum_probs=31.7
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCC
Q 010827 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (500)
Q Consensus 80 ~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (500)
.+|+|||||||||++|..|++. .+|++|+|+|+++.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~----~~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLL----DPAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHh----CCCCeEEEEecCCC
Confidence 3799999999999999999983 24899999999875
No 295
>PLN02268 probable polyamine oxidase
Probab=97.67 E-value=4.5e-05 Score=79.15 Aligned_cols=39 Identities=26% Similarity=0.494 Sum_probs=35.3
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCc
Q 010827 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP 124 (500)
Q Consensus 80 ~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~ 124 (500)
++|+|||||.|||+||+.|.+ .|++|+|+|++++++.+.
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~------~g~~v~vlEa~~r~GGri 39 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHD------ASFKVTLLESRDRIGGRV 39 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHh------CCCeEEEEeCCCCCCcee
Confidence 479999999999999999988 689999999999977654
No 296
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.66 E-value=0.00016 Score=69.10 Aligned_cols=39 Identities=28% Similarity=0.434 Sum_probs=34.3
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (500)
...+|||||||-.|.+.|.+|.+.-. +.|++|+++|+++
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~r--d~gl~VvVVErdd 123 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERAR--DEGLNVVVVERDD 123 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhh--cCCceEEEEeccC
Confidence 35789999999999999999988653 4689999999998
No 297
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.66 E-value=0.00019 Score=77.21 Aligned_cols=57 Identities=18% Similarity=0.068 Sum_probs=41.3
Q ss_pred CCceEeCCCcccCC------CCCEEEecccccc-cCCCCCCCCchHHHHHHHHHHHHHHHHHHHC
Q 010827 393 RGQAETDETLCVKG------HPRIFALGDSSAL-RDSSGRPLPATAQVAFQQADFAGWNLWAAIN 450 (500)
Q Consensus 393 ~g~i~vd~~~~t~~------~~~vyaiGD~~~~-~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 450 (500)
.|.+.+|...|| . .|++||+|+|+.. .....+.-......++..|+.+++++...+.
T Consensus 352 ~GGi~vd~~~~t-~~~~g~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~Gr~Ag~~aa~~~~ 415 (577)
T PRK06069 352 MGGIHTDVYGRV-LTADGEWVRGLWAAGEAAAVSVHGANRLGSNSTAECLVWGRIAGEQAAEYAL 415 (577)
T ss_pred CCCceECCCCcC-cCCCCCEeCCeEeccccccccccccccchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 577889999998 6 8999999999752 1111111134567788999999999887664
No 298
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.65 E-value=0.00014 Score=75.99 Aligned_cols=66 Identities=21% Similarity=0.239 Sum_probs=51.9
Q ss_pred CccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccC-------C--CCCcchHHHHHHHHHhCCcEEEcCceE
Q 010827 243 SLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTIC-------P--TGTPGNREAALKVLSARKVQLVLGYFV 311 (500)
Q Consensus 243 ~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~-------~--~~~~~~~~~~~~~l~~~gV~i~~~~~v 311 (500)
.+++|+|||+|+.|+.+|..|++.+.+ |+++++.+.+. + .++..+.....+.+++.|++++.++.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~---V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v 214 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQ---VVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEV 214 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEe
Confidence 468999999999999999999988776 99999876542 1 123444455667788999999999766
No 299
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=97.64 E-value=0.00024 Score=76.19 Aligned_cols=57 Identities=18% Similarity=0.109 Sum_probs=41.9
Q ss_pred CCceEeCCCcccCCCCCEEEecccccc--cCCCCCCCCchHHHHHHHHHHHHHHHHHHHCC
Q 010827 393 RGQAETDETLCVKGHPRIFALGDSSAL--RDSSGRPLPATAQVAFQQADFAGWNLWAAIND 451 (500)
Q Consensus 393 ~g~i~vd~~~~t~~~~~vyaiGD~~~~--~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 451 (500)
.|.|.+|...+| +.|++||+|+|+.. +..+ +.-......++-.|+.+++++......
T Consensus 357 ~GGi~~d~~~~t-~i~GLyAaGe~a~~G~hGan-rl~g~sl~~~~v~G~~ag~~aa~~~~~ 415 (580)
T TIGR01176 357 MGGIETDINCET-RIKGLFAVGECASVGLHGAN-RLGSNSLAELVVFGRRAGEAAAERAAR 415 (580)
T ss_pred CCCeeECcCccc-ccCCeEeeecccccCcCCCc-cccchhHHHHHHHHHHHHHHHHHhhcc
Confidence 567899999998 99999999999742 2111 111246678889999999999876543
No 300
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.63 E-value=0.00037 Score=69.85 Aligned_cols=94 Identities=21% Similarity=0.183 Sum_probs=62.4
Q ss_pred EEEEECCChhHHHHHHHHHHHHhhcCeEEEEec-CCccCCCC--C-----------------------------------
Q 010827 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINV-ETTICPTG--T----------------------------------- 287 (500)
Q Consensus 246 ~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~-~~~~~~~~--~----------------------------------- 287 (500)
+|+|||||..|+|+|..+++.+.+ |.++.. .+.+.... +
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~---V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~l 77 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAK---VLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRML 77 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT-----EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCC---EEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhcc
Confidence 589999999999999999999988 888843 23322100 0
Q ss_pred -----------------cchHHHHHHHHHh-CCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeec
Q 010827 288 -----------------PGNREAALKVLSA-RKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQ 349 (500)
Q Consensus 288 -----------------~~~~~~~~~~l~~-~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~ 349 (500)
..+...+.+.|++ .+++++. .+|+++..+++.. .+|...
T Consensus 78 N~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~-~~V~~l~~e~~~v--------------------~GV~~~-- 134 (392)
T PF01134_consen 78 NRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQ-GEVTDLIVENGKV--------------------KGVVTK-- 134 (392)
T ss_dssp STTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEE-S-EEEEEECTTEE--------------------EEEEET--
T ss_pred cccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEE-cccceEEecCCeE--------------------EEEEeC--
Confidence 1234455666666 6888874 5788887655221 234333
Q ss_pred ccccCCCccEEeecEEEEecCC
Q 010827 350 PAIKGLESQIFEADLVLWTVGS 371 (500)
Q Consensus 350 ~~~~~~~~~~l~~D~vi~a~G~ 371 (500)
+++++.+|.||+|||.
T Consensus 135 ------~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 135 ------DGEEIEADAVVLATGT 150 (392)
T ss_dssp ------TSEEEEECEEEE-TTT
T ss_pred ------CCCEEecCEEEEeccc
Confidence 7889999999999998
No 301
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.63 E-value=0.00015 Score=75.49 Aligned_cols=66 Identities=20% Similarity=0.260 Sum_probs=51.2
Q ss_pred CccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccC-------C--CCCcchHHHHHHHHHhCCcEEEcCceE
Q 010827 243 SLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTIC-------P--TGTPGNREAALKVLSARKVQLVLGYFV 311 (500)
Q Consensus 243 ~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~-------~--~~~~~~~~~~~~~l~~~gV~i~~~~~v 311 (500)
.+++|+|||+|+.|+.+|..|++.+.+ |+++++.+.+. + ..+..+.....+.+++.||+++.+..+
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~---V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v 206 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHS---VTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLV 206 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCc---EEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCcc
Confidence 368999999999999999999988766 99999876542 1 123445555567788899999998754
No 302
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.62 E-value=0.00028 Score=74.22 Aligned_cols=84 Identities=23% Similarity=0.228 Sum_probs=60.0
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEEe
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD 157 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (500)
..++|+|||+|++|+++|..|++ +|++|+++|+.+.. ....+...+++.++.++.+
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~------~G~~V~~~d~~~~~------------------~~~~~~~~l~~~gv~~~~~ 70 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLE------LGARVTVVDDGDDE------------------RHRALAAILEALGATVRLG 70 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH------CCCEEEEEeCCchh------------------hhHHHHHHHHHcCCEEEEC
Confidence 34789999999999999999988 78999999987530 0122344556678888765
Q ss_pred eEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCCCCCCCCCc
Q 010827 158 RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDVVPGA 211 (500)
Q Consensus 158 ~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p~~~~i~G~ 211 (500)
.. .. ....+|.||+++|..|..|.+...
T Consensus 71 ~~----------------------~~----~~~~~D~Vv~s~Gi~~~~~~~~~a 98 (480)
T PRK01438 71 PG----------------------PT----LPEDTDLVVTSPGWRPDAPLLAAA 98 (480)
T ss_pred CC----------------------cc----ccCCCCEEEECCCcCCCCHHHHHH
Confidence 31 00 123589999999998887755443
No 303
>PRK12831 putative oxidoreductase; Provisional
Probab=97.60 E-value=0.00022 Score=74.37 Aligned_cols=67 Identities=16% Similarity=0.159 Sum_probs=51.4
Q ss_pred CCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccC-------CC--CCcc-hHHHHHHHHHhCCcEEEcCceE
Q 010827 242 DSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTIC-------PT--GTPG-NREAALKVLSARKVQLVLGYFV 311 (500)
Q Consensus 242 ~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~-------~~--~~~~-~~~~~~~~l~~~gV~i~~~~~v 311 (500)
..+++|+|||+|+.|+.+|..|++.+.+ |+++++.+.+. +. ++.. +.....+.+++.||+++.++.+
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~---V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v 214 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYD---VTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVV 214 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCe---EEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEE
Confidence 3478999999999999999999998776 99999765432 11 1222 5555567788899999999755
No 304
>PLN02576 protoporphyrinogen oxidase
Probab=97.60 E-value=6.7e-05 Score=79.29 Aligned_cols=41 Identities=27% Similarity=0.397 Sum_probs=36.1
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCC-CCeEEEEcCCCCcccCc
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDK-KPQVLLVDQSERFVFKP 124 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~-g~~V~lie~~~~~~~~~ 124 (500)
..++|+|||||++||+||++|.+ . |++|+|+|++++++...
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~------~~g~~v~vlEa~~rvGGr~ 52 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALAS------KHGVNVLVTEARDRVGGNI 52 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHH------hcCCCEEEEecCCCCCCce
Confidence 34689999999999999999998 6 89999999999876553
No 305
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.59 E-value=6.2e-05 Score=78.76 Aligned_cols=44 Identities=34% Similarity=0.461 Sum_probs=35.5
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCc
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP 124 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~ 124 (500)
+++|+|||||++||+||+.|++.+. ..|++|+|+|+++++++..
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~--~~g~~v~vlE~~~r~GG~~ 45 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIP--ELPVELTLVEASDRVGGKI 45 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCC--CCCCcEEEEEcCCcCcceE
Confidence 3789999999999999999998210 0189999999999866543
No 306
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.58 E-value=0.00049 Score=70.34 Aligned_cols=34 Identities=18% Similarity=0.187 Sum_probs=29.7
Q ss_pred ccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCC
Q 010827 244 LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVET 280 (500)
Q Consensus 244 ~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~ 280 (500)
..+|+|||+|++|+-+|..|++.+.+ |+++++.+
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~---v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLS---VALVEGRE 39 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCE---EEEEeCCC
Confidence 35899999999999999999988776 99999864
No 307
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.58 E-value=0.00061 Score=69.71 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=30.6
Q ss_pred ccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCc
Q 010827 244 LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETT 281 (500)
Q Consensus 244 ~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~ 281 (500)
+.+|+|||+|..|+-+|..|++.+.+ |+++++.+.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~---v~v~Er~~~ 38 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIK---VKLLEQAAE 38 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCc---EEEEeeCcc
Confidence 46999999999999999999987766 999987654
No 308
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.56 E-value=0.00061 Score=72.83 Aligned_cols=98 Identities=14% Similarity=0.094 Sum_probs=68.8
Q ss_pred cEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccC-----------CCC----CcchHHHHHHHHHhCCcEEEcCc
Q 010827 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTIC-----------PTG----TPGNREAALKVLSARKVQLVLGY 309 (500)
Q Consensus 245 k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~-----------~~~----~~~~~~~~~~~l~~~gV~i~~~~ 309 (500)
..|+|||||+.|+.+|..+++.+.+ |+++++...-. +.. ...+.+.+.+.+++.|++++ ..
T Consensus 5 yDVvIIGgGpAGL~AA~~lar~g~~---V~liE~~~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~ 80 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRAKLD---TLIIEKDDFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL-QA 80 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCC---EEEEecCCCCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-cc
Confidence 3899999999999999999987766 99999753210 111 12345566677788899986 56
Q ss_pred eEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccEEeecEEEEecCCCCCCC
Q 010827 310 FVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLP 376 (500)
Q Consensus 310 ~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~p~~~ 376 (500)
.+..++.++ +...+.. ....+.+|.||+|||..|...
T Consensus 81 ~V~~i~~~~-----------------------~~~~V~~-------~~g~~~a~~lVlATGa~p~~~ 117 (555)
T TIGR03143 81 EVLDVDFDG-----------------------DIKTIKT-------ARGDYKTLAVLIATGASPRKL 117 (555)
T ss_pred EEEEEEecC-----------------------CEEEEEe-------cCCEEEEeEEEECCCCccCCC
Confidence 777777543 2334442 223578999999999988743
No 309
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=97.54 E-value=0.00049 Score=68.89 Aligned_cols=31 Identities=23% Similarity=0.412 Sum_probs=28.5
Q ss_pred EEEEECCChhHHHHHHHHHHHHhhcCeEEEEecC
Q 010827 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVE 279 (500)
Q Consensus 246 ~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~ 279 (500)
+|+|||+|..|+-+|..|++.+.+ |+++++.
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~---V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHS---VTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSE---EEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCe---EEEEeec
Confidence 589999999999999999998776 9999986
No 310
>PRK06184 hypothetical protein; Provisional
Probab=97.54 E-value=0.0007 Score=71.63 Aligned_cols=100 Identities=15% Similarity=0.139 Sum_probs=68.5
Q ss_pred cEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCC-----CC--------------------------------
Q 010827 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPT-----GT-------------------------------- 287 (500)
Q Consensus 245 k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~-----~~-------------------------------- 287 (500)
-+|+|||+|++|+-+|..|++.+.+ |+++++.+.+... +.
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~---v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~ 80 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVS---FRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDD 80 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCC
Confidence 3799999999999999999998876 8888875432110 00
Q ss_pred ----------------------------cchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCccccccccc
Q 010827 288 ----------------------------PGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADK 339 (500)
Q Consensus 288 ----------------------------~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (500)
..+.+.+.+.+.+.|++++.++++++++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~--------------------- 139 (502)
T PRK06184 81 GSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDA--------------------- 139 (502)
T ss_pred ceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcC---------------------
Confidence 0012234455666788888888888887654
Q ss_pred CCcceeEeecccccCCCccEEeecEEEEecCCCC
Q 010827 340 NSDKYILELQPAIKGLESQIFEADLVLWTVGSKP 373 (500)
Q Consensus 340 ~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~p 373 (500)
+++++.+. ..++++++.+|.||.|.|...
T Consensus 140 --~~v~v~~~---~~~~~~~i~a~~vVgADG~~S 168 (502)
T PRK06184 140 --DGVTARVA---GPAGEETVRARYLVGADGGRS 168 (502)
T ss_pred --CcEEEEEE---eCCCeEEEEeCEEEECCCCch
Confidence 45555442 112556899999999999764
No 311
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.53 E-value=0.00026 Score=78.59 Aligned_cols=67 Identities=21% Similarity=0.261 Sum_probs=51.4
Q ss_pred CCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccC-------CC--CCcchHHHHHHHHHhCCcEEEcCceE
Q 010827 242 DSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTIC-------PT--GTPGNREAALKVLSARKVQLVLGYFV 311 (500)
Q Consensus 242 ~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~-------~~--~~~~~~~~~~~~l~~~gV~i~~~~~v 311 (500)
..+++|+|||+|+.|+.+|..|++.+.+ |+++++.+.+. +. ++........+.+++.||+|+.++.+
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~---V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v 504 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYD---VTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIV 504 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCe---EEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEE
Confidence 3578999999999999999999998876 99999865432 11 23344555567788899999998654
No 312
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.53 E-value=0.00043 Score=74.45 Aligned_cols=58 Identities=16% Similarity=0.008 Sum_probs=38.4
Q ss_pred CCceEeCCCccc-----CCCCCEEEeccccc-ccCCCCCCCCchHHHHHHHHHHHHHHHHHHHC
Q 010827 393 RGQAETDETLCV-----KGHPRIFALGDSSA-LRDSSGRPLPATAQVAFQQADFAGWNLWAAIN 450 (500)
Q Consensus 393 ~g~i~vd~~~~t-----~~~~~vyaiGD~~~-~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 450 (500)
.|.+.+|...|+ ++.|++||+|+|+. ......+........++-.|+.|++++...+.
T Consensus 356 ~GGi~id~~~~v~~~~~t~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~ 419 (583)
T PRK08205 356 MGGIPTTVDGEVLRDNTTVVPGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGIAAAEYAR 419 (583)
T ss_pred CCCeeECCCceEecCCCCCcCCeeeccccccCCCCCCcCCchhhHHHHHHHHHHHHHHHHHHhh
Confidence 355666655553 27999999999975 21111111134567788899999999887664
No 313
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.0031 Score=61.73 Aligned_cols=98 Identities=18% Similarity=0.141 Sum_probs=68.2
Q ss_pred cEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccC------------CC-----CCcchHHHHHHHHHhCCcEEEc
Q 010827 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTIC------------PT-----GTPGNREAALKVLSARKVQLVL 307 (500)
Q Consensus 245 k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~------------~~-----~~~~~~~~~~~~l~~~gV~i~~ 307 (500)
-.|+|||+|+.|+-+|.++++.+.+ ++++.-..... |. ..+++.+.+.+..+..++++..
T Consensus 4 ~DviIIG~GPAGl~AAiya~r~~l~---~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~ 80 (305)
T COG0492 4 YDVIIIGGGPAGLTAAIYAARAGLK---VVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE 80 (305)
T ss_pred eeEEEECCCHHHHHHHHHHHHcCCC---cEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE
Confidence 3899999999999999999987755 33333222111 11 2356667777777788999888
Q ss_pred CceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccEEeecEEEEecCCCCCCC
Q 010827 308 GYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLP 376 (500)
Q Consensus 308 ~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~p~~~ 376 (500)
..+.+++..+ +.+.+... +++ +.++.||+|+|..+...
T Consensus 81 -~~v~~v~~~~-----------------------~~F~v~t~------~~~-~~ak~vIiAtG~~~~~~ 118 (305)
T COG0492 81 -DEVEKVELEG-----------------------GPFKVKTD------KGT-YEAKAVIIATGAGARKL 118 (305)
T ss_pred -EEEEEEeecC-----------------------ceEEEEEC------CCe-EEEeEEEECcCCcccCC
Confidence 5777777643 24556531 344 99999999999987744
No 314
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.52 E-value=0.00067 Score=69.60 Aligned_cols=97 Identities=19% Similarity=0.202 Sum_probs=66.9
Q ss_pred EEEEECCChhHHHHHHHHHHHH--hhcCeEEEEecCCccCCCC-------------------------------------
Q 010827 246 RVAVVGCGYSGVELAATVSERL--EEKGIVQAINVETTICPTG------------------------------------- 286 (500)
Q Consensus 246 ~V~VvGgG~~g~e~A~~l~~~~--~~~~~vtlv~~~~~~~~~~------------------------------------- 286 (500)
+|+|||||+.|+-+|..|++.+ .+ |+++++.+...+..
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~g~g~~---v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~ 79 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQAAPHLP---VTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVIT 79 (403)
T ss_pred CEEEECccHHHHHHHHHHhcCCCCCE---EEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEE
Confidence 6999999999999999999875 33 88888753211000
Q ss_pred ------------------------------CcchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccc
Q 010827 287 ------------------------------TPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIA 336 (500)
Q Consensus 287 ------------------------------~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~ 336 (500)
...+.+.+.+.+.+.|++++.++.|++++.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~------------------ 141 (403)
T PRK07333 80 DSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRD------------------ 141 (403)
T ss_pred eCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcC------------------
Confidence 00122334455566788888888888877644
Q ss_pred cccCCcceeEeecccccCCCccEEeecEEEEecCCCCC
Q 010827 337 ADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPL 374 (500)
Q Consensus 337 ~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~p~ 374 (500)
+.+.+.+. ++.++.+|.||.|.|....
T Consensus 142 -----~~v~v~~~------~g~~~~ad~vI~AdG~~S~ 168 (403)
T PRK07333 142 -----EGVTVTLS------DGSVLEARLLVAADGARSK 168 (403)
T ss_pred -----CEEEEEEC------CCCEEEeCEEEEcCCCChH
Confidence 45555542 5678999999999998754
No 315
>PRK08244 hypothetical protein; Provisional
Probab=97.52 E-value=0.00074 Score=71.28 Aligned_cols=100 Identities=16% Similarity=0.147 Sum_probs=69.3
Q ss_pred EEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCC----------------------------------------
Q 010827 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPT---------------------------------------- 285 (500)
Q Consensus 246 ~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~---------------------------------------- 285 (500)
.|+|||+|++|+-+|..|++.+.+ |+++++.+.....
T Consensus 4 dVlIVGaGpaGl~lA~~L~~~G~~---v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 80 (493)
T PRK08244 4 EVIIIGGGPVGLMLASELALAGVK---TCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDT 80 (493)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccc
Confidence 799999999999999999998876 8888875432110
Q ss_pred ---C-------C-------cchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEee
Q 010827 286 ---G-------T-------PGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILEL 348 (500)
Q Consensus 286 ---~-------~-------~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~ 348 (500)
+ + ..+.+.+.+.+++.|++++.++++++++.++ +++.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~-----------------------~~v~v~~ 137 (493)
T PRK08244 81 RLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDG-----------------------DGVEVVV 137 (493)
T ss_pred cCCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcC-----------------------CeEEEEE
Confidence 0 0 0122334455667789999999998887654 4555544
Q ss_pred cccccCCCccEEeecEEEEecCCCCC
Q 010827 349 QPAIKGLESQIFEADLVLWTVGSKPL 374 (500)
Q Consensus 349 ~~~~~~~~~~~l~~D~vi~a~G~~p~ 374 (500)
. ..++.+++.+|+||.|.|....
T Consensus 138 ~---~~~g~~~i~a~~vVgADG~~S~ 160 (493)
T PRK08244 138 R---GPDGLRTLTSSYVVGADGAGSI 160 (493)
T ss_pred E---eCCccEEEEeCEEEECCCCChH
Confidence 2 1112357899999999998763
No 316
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.51 E-value=0.00022 Score=77.26 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=33.2
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCC
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (500)
....+|+||||||+||.+|..|+++ .|++|+|||+.+.
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~-----~Gi~v~IiE~~~~ 67 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAF-----PDITTRIVERKPG 67 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcC-----CCCcEEEEEcCCC
Confidence 3468999999999999999999983 3899999999864
No 317
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.51 E-value=0.00014 Score=78.16 Aligned_cols=36 Identities=42% Similarity=0.641 Sum_probs=32.9
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (500)
..+.+|+|||||++||++|..|++ .|++|+|||+.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r------~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKK------KGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHh------cCCeEEEEeccc
Confidence 455899999999999999999999 799999999975
No 318
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.50 E-value=0.00011 Score=74.35 Aligned_cols=49 Identities=20% Similarity=0.194 Sum_probs=40.9
Q ss_pred eCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHCCCCCC
Q 010827 398 TDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLL 455 (500)
Q Consensus 398 vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~~~ 455 (500)
.+.+|+++..|++|++|..... .-...|..+|..|+.|+...+.++++.
T Consensus 321 l~~~l~~k~~~~l~~AGqi~g~---------~Gy~ea~a~G~~Ag~n~~~~~~g~~~~ 369 (436)
T PRK05335 321 LDPTLQLKKRPNLFFAGQITGV---------EGYVESAASGLLAGINAARLALGKEPV 369 (436)
T ss_pred CchhccccCCCCEEeeeeecCc---------hHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 3468898889999999999985 334489999999999999999987544
No 319
>PLN02487 zeta-carotene desaturase
Probab=97.49 E-value=0.0002 Score=75.97 Aligned_cols=39 Identities=23% Similarity=0.339 Sum_probs=35.0
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCccc
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF 122 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~ 122 (500)
.+++|+|||||++||++|..|++ .|++|+|+|+.+..+.
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~------~g~~v~i~E~~~~~gG 112 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLD------QGHEVDIYESRPFIGG 112 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHh------CCCeeEEEecCCCCCC
Confidence 45799999999999999999998 7999999999987654
No 320
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.49 E-value=0.00013 Score=71.91 Aligned_cols=102 Identities=19% Similarity=0.292 Sum_probs=69.0
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccC--------CCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccC
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQ--------DDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANT 150 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~--------~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 150 (500)
.-++|||||||.|++.|.+|+...-+ -....+||++|..+... ..++ ..+...-.+++.+.
T Consensus 218 lLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL----------~mFd-krl~~yae~~f~~~ 286 (491)
T KOG2495|consen 218 LLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHIL----------NMFD-KRLVEYAENQFVRD 286 (491)
T ss_pred eEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHH----------HHHH-HHHHHHHHHHhhhc
Confidence 46899999999999999998654311 12568899999987521 1111 12334445677788
Q ss_pred CcEEEEe-eEEEEecCCCCCCCCCceeecCcEEEcCCc--cEEEecEEEEeCCCCCC
Q 010827 151 GVQFFKD-RVKLLCPSDHLGVNGPMACTHGGTVLLESG--LIVEYDWLVLSLGAEPK 204 (500)
Q Consensus 151 ~v~~~~~-~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g--~~~~~d~lIlAtG~~p~ 204 (500)
++++..+ .|..++.+.- .+...+| ..+.|--||-|||..|+
T Consensus 287 ~I~~~~~t~Vk~V~~~~I-------------~~~~~~g~~~~iPYG~lVWatG~~~r 330 (491)
T KOG2495|consen 287 GIDLDTGTMVKKVTEKTI-------------HAKTKDGEIEEIPYGLLVWATGNGPR 330 (491)
T ss_pred cceeecccEEEeecCcEE-------------EEEcCCCceeeecceEEEecCCCCCc
Confidence 9999988 6666654422 1222233 58999999999998765
No 321
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.49 E-value=0.00027 Score=80.21 Aligned_cols=66 Identities=17% Similarity=0.152 Sum_probs=52.6
Q ss_pred CccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCC---------CCcchHHHHHHHHHhCCcEEEcCceE
Q 010827 243 SLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPT---------GTPGNREAALKVLSARKVQLVLGYFV 311 (500)
Q Consensus 243 ~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~---------~~~~~~~~~~~~l~~~gV~i~~~~~v 311 (500)
.+++|+|||+|+.|+.+|..|++.+.+ |+++++.+.+... .+.++.....+.+++.||++++++.+
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~---VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~v 503 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVD---VTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVI 503 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCc---EEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCcc
Confidence 368999999999999999999999877 9999987654321 23455566677889999999998653
No 322
>PRK07588 hypothetical protein; Provisional
Probab=97.48 E-value=0.00083 Score=68.65 Aligned_cols=33 Identities=27% Similarity=0.303 Sum_probs=29.3
Q ss_pred EEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCc
Q 010827 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVETT 281 (500)
Q Consensus 246 ~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~ 281 (500)
+|+|||||..|+-+|..|++.+.+ |+++++.+.
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~---v~v~E~~~~ 34 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHE---PTLIERAPE 34 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCc---eEEEeCCCC
Confidence 799999999999999999988766 999987654
No 323
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.47 E-value=0.00032 Score=73.51 Aligned_cols=66 Identities=18% Similarity=0.188 Sum_probs=51.0
Q ss_pred CccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCC---------CCcchHHHHHHHHHhCCcEEEcCceE
Q 010827 243 SLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPT---------GTPGNREAALKVLSARKVQLVLGYFV 311 (500)
Q Consensus 243 ~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~---------~~~~~~~~~~~~l~~~gV~i~~~~~v 311 (500)
.+++|+|||+|+.|+.+|..|++.+.+ |+++++.+.+... .+........+.+.+.||+++.++.+
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~---V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v 216 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHK---VTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEV 216 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCc---EEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEE
Confidence 368999999999999999999988776 9999987655321 23334444556788899999998765
No 324
>PLN02463 lycopene beta cyclase
Probab=97.45 E-value=0.0009 Score=69.26 Aligned_cols=96 Identities=24% Similarity=0.194 Sum_probs=66.8
Q ss_pred EEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccC-CC-C-------------------------------------
Q 010827 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTIC-PT-G------------------------------------- 286 (500)
Q Consensus 246 ~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~-~~-~------------------------------------- 286 (500)
+|+|||||++|..+|..|++.+.+ |.++++.+... +. +
T Consensus 30 DVvIVGaGpAGLalA~~La~~Gl~---V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~ 106 (447)
T PLN02463 30 DLVVVGGGPAGLAVAQQVSEAGLS---VCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDR 106 (447)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCe---EEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccC
Confidence 899999999999999999887665 99998754211 00 0
Q ss_pred ------CcchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccEE
Q 010827 287 ------TPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIF 360 (500)
Q Consensus 287 ------~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l 360 (500)
...+.+.+.+.+.+.|++++ ...|++|+..+ +.+.+.+. ++.++
T Consensus 107 ~y~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~-----------------------~~~~V~~~------dG~~i 156 (447)
T PLN02463 107 PYGRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEE-----------------------SKSLVVCD------DGVKI 156 (447)
T ss_pred cceeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcC-----------------------CeEEEEEC------CCCEE
Confidence 01122334455566789987 45788887654 44555542 56789
Q ss_pred eecEEEEecCCCCC
Q 010827 361 EADLVLWTVGSKPL 374 (500)
Q Consensus 361 ~~D~vi~a~G~~p~ 374 (500)
.+|.||.|+|..+.
T Consensus 157 ~A~lVI~AdG~~s~ 170 (447)
T PLN02463 157 QASLVLDATGFSRC 170 (447)
T ss_pred EcCEEEECcCCCcC
Confidence 99999999998754
No 325
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.45 E-value=0.00012 Score=76.52 Aligned_cols=45 Identities=29% Similarity=0.405 Sum_probs=35.3
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCc
Q 010827 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP 124 (500)
Q Consensus 80 ~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~ 124 (500)
++|+|||||.+||+||+.|.+.+.....|++|+|+|++++++...
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~ 46 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKI 46 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceE
Confidence 689999999999999999988421001258999999999876653
No 326
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.45 E-value=0.00034 Score=76.09 Aligned_cols=66 Identities=17% Similarity=0.179 Sum_probs=52.2
Q ss_pred CccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCC---------CCCcchHHHHHHHHHhCCcEEEcCceE
Q 010827 243 SLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICP---------TGTPGNREAALKVLSARKVQLVLGYFV 311 (500)
Q Consensus 243 ~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~---------~~~~~~~~~~~~~l~~~gV~i~~~~~v 311 (500)
.+|+|+|||+|+.|+.+|..|++.+.+ |+++++.+.+.. .++....+...+.+++.||++++++.+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~---Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v 383 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQ---VDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEI 383 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCc---EEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCcc
Confidence 479999999999999999999998776 999998876431 123344445567788999999999765
No 327
>PRK07538 hypothetical protein; Provisional
Probab=97.44 E-value=0.00013 Score=75.26 Aligned_cols=34 Identities=32% Similarity=0.604 Sum_probs=31.2
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCC
Q 010827 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (500)
Q Consensus 80 ~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (500)
++|+||||||+||++|..|++ .|++|+|||+.+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~------~G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQ------RGIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHh------CCCcEEEEEcCCc
Confidence 479999999999999999998 7999999999863
No 328
>PRK05868 hypothetical protein; Validated
Probab=97.44 E-value=0.0013 Score=66.76 Aligned_cols=35 Identities=17% Similarity=0.158 Sum_probs=30.7
Q ss_pred cEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCcc
Q 010827 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTI 282 (500)
Q Consensus 245 k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~ 282 (500)
++|+|||||..|+.+|..|++.+.+ |+++++.+.+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~---v~viE~~~~~ 36 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYS---VTMVERHPGL 36 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCC---EEEEcCCCCC
Confidence 4899999999999999999988776 9999987654
No 329
>PRK09897 hypothetical protein; Provisional
Probab=97.43 E-value=0.0013 Score=69.45 Aligned_cols=38 Identities=13% Similarity=0.193 Sum_probs=29.8
Q ss_pred cEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccC
Q 010827 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTIC 283 (500)
Q Consensus 245 k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~ 283 (500)
++|+|||+|++|+-+|..|.+.... -.|+++++...+.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~-l~V~lfEp~~~~G 39 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTP-LSISIFEQADEAG 39 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCC-CcEEEEecCCCCC
Confidence 5899999999999999999875432 2399999855443
No 330
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.43 E-value=0.00062 Score=71.90 Aligned_cols=144 Identities=20% Similarity=0.210 Sum_probs=85.2
Q ss_pred cEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCC-------------------------------CCC------
Q 010827 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICP-------------------------------TGT------ 287 (500)
Q Consensus 245 k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~-------------------------------~~~------ 287 (500)
|+|+|||+|.+|+-.+..|.+.+-+ ++++++.+.+.. +++
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~---~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p 78 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLE---VTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYP 78 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-E---EEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCS
T ss_pred CEEEEECccHHHHHHHHHHHHCCCC---CeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCC
Confidence 6999999999999999999988776 999998664421 111
Q ss_pred -----cchHHHHHHHHHhCCc--EEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccEE
Q 010827 288 -----PGNREAALKVLSARKV--QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIF 360 (500)
Q Consensus 288 -----~~~~~~~~~~l~~~gV--~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l 360 (500)
.++.++++...+..++ .|..+++|.+++..++.. ..++-.+... .++..++.
T Consensus 79 ~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~------------------~~~~W~V~~~---~~g~~~~~ 137 (531)
T PF00743_consen 79 DFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFS------------------ATGKWEVTTE---NDGKEETE 137 (531)
T ss_dssp SSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-------------------ETEEEEEET---TTTEEEEE
T ss_pred CCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccC------------------CCceEEEEee---cCCeEEEE
Confidence 3455666777777776 588999999998643210 0033444432 22233455
Q ss_pred eecEEEEecCCC--CCCCCCCCCCCccCCCCCCCCCceEeCCCcccC---CCCCEEEeccccc
Q 010827 361 EADLVLWTVGSK--PLLPHVEPPNNRLHDLPLNARGQAETDETLCVK---GHPRIFALGDSSA 418 (500)
Q Consensus 361 ~~D~vi~a~G~~--p~~~~~~~~~~~~~~~~~~~~g~i~vd~~~~t~---~~~~vyaiGD~~~ 418 (500)
.+|.||+|+|.- |+.+...-. |++. -.|.+.....++.. ..++|-++|-..+
T Consensus 138 ~fD~VvvatG~~~~P~~P~~~~~-----G~e~-F~G~i~HS~~yr~~~~f~gKrVlVVG~g~S 194 (531)
T PF00743_consen 138 EFDAVVVATGHFSKPNIPEPSFP-----GLEK-FKGEIIHSKDYRDPEPFKGKRVLVVGGGNS 194 (531)
T ss_dssp EECEEEEEE-SSSCESB-----C-----TGGG-HCSEEEEGGG--TGGGGTTSEEEEESSSHH
T ss_pred EeCeEEEcCCCcCCCCCChhhhh-----hhhc-CCeeEEccccCcChhhcCCCEEEEEeCCHh
Confidence 799999999975 443320011 2221 14667766555532 3577888887655
No 331
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.42 E-value=0.00039 Score=77.87 Aligned_cols=64 Identities=16% Similarity=0.201 Sum_probs=48.1
Q ss_pred CccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCC---------CCcchHHHHHHHHHhCCcEEEcCc
Q 010827 243 SLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPT---------GTPGNREAALKVLSARKVQLVLGY 309 (500)
Q Consensus 243 ~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~---------~~~~~~~~~~~~l~~~gV~i~~~~ 309 (500)
.+++|+|||||+.|+.+|..|++.+.+ |+++++.+.+... .+.+......+.+.+.||+++.+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~---VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~ 608 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHP---VTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGC 608 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCe---EEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEec
Confidence 358999999999999999999998876 9999987654221 122334444566778899998873
No 332
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.42 E-value=0.0013 Score=67.82 Aligned_cols=34 Identities=29% Similarity=0.444 Sum_probs=30.0
Q ss_pred cEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCc
Q 010827 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETT 281 (500)
Q Consensus 245 k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~ 281 (500)
.+|+|||+|+.|+-+|..|++.+.+ |+++++.+.
T Consensus 19 ~dV~IvGaG~aGl~~A~~L~~~G~~---v~v~E~~~~ 52 (415)
T PRK07364 19 YDVAIVGGGIVGLTLAAALKDSGLR---IALIEAQPA 52 (415)
T ss_pred cCEEEECcCHHHHHHHHHHhcCCCE---EEEEecCCc
Confidence 4899999999999999999988776 999988654
No 333
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=97.42 E-value=0.00016 Score=74.45 Aligned_cols=34 Identities=29% Similarity=0.489 Sum_probs=31.8
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCC
Q 010827 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (500)
Q Consensus 80 ~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (500)
+||+|||||..|+++|++|++ .|++|+|+|+++.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~------~g~~V~vle~~~~ 35 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQ------RGYQVTVFDRHRY 35 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHH------CCCeEEEEeCCCC
Confidence 699999999999999999999 6899999999864
No 334
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.42 E-value=0.00016 Score=76.39 Aligned_cols=39 Identities=23% Similarity=0.312 Sum_probs=35.0
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCc
Q 010827 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP 124 (500)
Q Consensus 80 ~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~ 124 (500)
+||+|||||++||+||..|++ .|++|+|+|+++..+...
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~------~G~~v~vlE~~~~~GG~~ 40 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAK------RGYRVTLLEQHAQPGGCA 40 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHH------CCCeEEEEecCCCCCCcc
Confidence 689999999999999999999 799999999998765543
No 335
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.42 E-value=0.00036 Score=76.13 Aligned_cols=66 Identities=23% Similarity=0.242 Sum_probs=51.2
Q ss_pred CccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccC-------CC--CCcchHHHHHHHHHhCCcEEEcCceE
Q 010827 243 SLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTIC-------PT--GTPGNREAALKVLSARKVQLVLGYFV 311 (500)
Q Consensus 243 ~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~-------~~--~~~~~~~~~~~~l~~~gV~i~~~~~v 311 (500)
.+++|+|||+|+.|+.+|..|++.+.+ |+++++.+.+. +. ++..+.....+.+++.||+++.++.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~---V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v 400 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVA---VTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEV 400 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEe
Confidence 478999999999999999999998776 99999876542 11 22334444566788899999998765
No 336
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=97.41 E-value=0.00018 Score=76.00 Aligned_cols=37 Identities=24% Similarity=0.381 Sum_probs=33.6
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCC
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (500)
...+||+|||||..|+++|+.|++ +|++|+|+|+++.
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~------rGl~V~LvEk~d~ 40 (508)
T PRK12266 4 METYDLLVIGGGINGAGIARDAAG------RGLSVLLCEQDDL 40 (508)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHH------CCCeEEEEecCCC
Confidence 345899999999999999999999 7999999999864
No 337
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.40 E-value=0.00019 Score=72.20 Aligned_cols=37 Identities=24% Similarity=0.311 Sum_probs=32.9
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCccc
Q 010827 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF 122 (500)
Q Consensus 80 ~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~ 122 (500)
.||+|||||++|+++|..|++ .|.+|+|+|+++..+.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~------~G~~V~viEk~~~iGG 38 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQ------LNKRVLVVEKRNHIGG 38 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHh------CCCeEEEEecCCCCCC
Confidence 689999999999999999998 6889999999877443
No 338
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.39 E-value=0.00017 Score=72.23 Aligned_cols=41 Identities=32% Similarity=0.431 Sum_probs=34.7
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCccc
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF 122 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~ 122 (500)
....+|||||||.|||+||.+|.+.+ ..+++|+|..++.++
T Consensus 19 ~~~~kIvIIGAG~AGLaAA~rLle~g-----f~~~~IlEa~dRIGG 59 (498)
T KOG0685|consen 19 RGNAKIVIIGAGIAGLAAATRLLENG-----FIDVLILEASDRIGG 59 (498)
T ss_pred cCCceEEEECCchHHHHHHHHHHHhC-----CceEEEEEeccccCc
Confidence 34469999999999999999999753 569999999998443
No 339
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.38 E-value=0.0015 Score=67.00 Aligned_cols=34 Identities=21% Similarity=0.221 Sum_probs=29.5
Q ss_pred cEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCc
Q 010827 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETT 281 (500)
Q Consensus 245 k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~ 281 (500)
++|+|||||..|+-+|..|++.+.+ |+++++.+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~---V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWA---VTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCc
Confidence 6899999999999999999987766 888887553
No 340
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.38 E-value=0.00017 Score=75.25 Aligned_cols=38 Identities=24% Similarity=0.338 Sum_probs=34.1
Q ss_pred eEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCc
Q 010827 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP 124 (500)
Q Consensus 81 ~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~ 124 (500)
+|+|||||++||+||+.|.+ +|++|+|+|+.++++...
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~------~G~~v~vlE~~~~~GG~~ 38 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLAD------AGHTPIVLEARDVLGGKV 38 (453)
T ss_pred CEEEECCCHHHHHHHHHHHH------CCCcEEEEecCCCCCCCc
Confidence 58999999999999999999 789999999999866543
No 341
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.37 E-value=0.00046 Score=75.12 Aligned_cols=66 Identities=18% Similarity=0.217 Sum_probs=51.3
Q ss_pred CccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccC-------CC--CCcchHHHHHHHHHhCCcEEEcCceE
Q 010827 243 SLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTIC-------PT--GTPGNREAALKVLSARKVQLVLGYFV 311 (500)
Q Consensus 243 ~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~-------~~--~~~~~~~~~~~~l~~~gV~i~~~~~v 311 (500)
.+++|+|||+|+.|+.+|..|++.+.+ |+++++.+.+. +. .+..+.+...+.+.+.|++++.++.+
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~---Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v 266 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHD---VTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVF 266 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcc
Confidence 368999999999999999999988776 99999876542 11 23444555567788899999988654
No 342
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=97.33 E-value=0.0018 Score=67.04 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=29.1
Q ss_pred cEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCC
Q 010827 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVET 280 (500)
Q Consensus 245 k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~ 280 (500)
-.|+|||+|++|.-+|..|++.+.+ |.++++..
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G~~---V~llEr~~ 38 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGAQ---VLVIERGN 38 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCe---EEEEEcCC
Confidence 3899999999999999999988776 88888754
No 343
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.31 E-value=0.0016 Score=66.16 Aligned_cols=33 Identities=27% Similarity=0.394 Sum_probs=28.8
Q ss_pred EEEEECCChhHHHHHHHHHHHH-hhcCeEEEEecCCc
Q 010827 246 RVAVVGCGYSGVELAATVSERL-EEKGIVQAINVETT 281 (500)
Q Consensus 246 ~V~VvGgG~~g~e~A~~l~~~~-~~~~~vtlv~~~~~ 281 (500)
.|+|||+|+.|+-+|..|++.+ .+ |+++++...
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~---v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIK---IALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCce---EEEEeCCCc
Confidence 3899999999999999999988 76 999987653
No 344
>PLN02568 polyamine oxidase
Probab=97.30 E-value=0.00029 Score=74.61 Aligned_cols=45 Identities=31% Similarity=0.461 Sum_probs=36.3
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccC
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFK 123 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~ 123 (500)
+.++|+|||||++||+||..|++.+. ...+++|+|+|++++.+..
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~-~~~~~~v~v~E~~~~~GGr 48 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSA-ANDMFELTVVEGGDRIGGR 48 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhccc-ccCCceEEEEeCCCCcCCe
Confidence 34789999999999999999998431 1245999999999986554
No 345
>PRK07190 hypothetical protein; Provisional
Probab=97.30 E-value=0.0021 Score=67.47 Aligned_cols=33 Identities=15% Similarity=0.096 Sum_probs=28.0
Q ss_pred cEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCC
Q 010827 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVET 280 (500)
Q Consensus 245 k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~ 280 (500)
..|+|||+|++|+-+|..|++.+.+ |.++++.+
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~---V~llEr~~ 38 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLN---TVIVDKSD 38 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCC---EEEEeCCC
Confidence 4899999999999999999887766 77777654
No 346
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.29 E-value=0.0024 Score=72.86 Aligned_cols=70 Identities=19% Similarity=0.098 Sum_probs=51.2
Q ss_pred ccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCCCC-----------cchHHHHHHHHHhC-CcEEEcCceE
Q 010827 244 LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGT-----------PGNREAALKVLSAR-KVQLVLGYFV 311 (500)
Q Consensus 244 ~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~~~-----------~~~~~~~~~~l~~~-gV~i~~~~~v 311 (500)
.++|+|||+|+.|+..|..+++.+.+ |++++..+.+..... ......+.+.+++. +|++++++.|
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~---V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V 239 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGAR---VILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTA 239 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEE
Confidence 46899999999999999999998776 999998665432110 12223344555555 5999999999
Q ss_pred EEEec
Q 010827 312 RCIRR 316 (500)
Q Consensus 312 ~~i~~ 316 (500)
..+..
T Consensus 240 ~~i~~ 244 (985)
T TIGR01372 240 FGYYD 244 (985)
T ss_pred EEEec
Confidence 88865
No 347
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.29 E-value=0.00073 Score=71.51 Aligned_cols=57 Identities=16% Similarity=0.077 Sum_probs=41.2
Q ss_pred CCceEeCCCcccCCCCCEEEeccccc-ccCCCCCCCCchHHHHHHHHHHHHHHHHHHHC
Q 010827 393 RGQAETDETLCVKGHPRIFALGDSSA-LRDSSGRPLPATAQVAFQQADFAGWNLWAAIN 450 (500)
Q Consensus 393 ~g~i~vd~~~~t~~~~~vyaiGD~~~-~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 450 (500)
.|.|.||...+| +.|++||+|+|+. ......+........++..|+.+++++.....
T Consensus 341 ~GGi~vd~~~~t-~I~GLyAaGE~a~~G~hGanrl~gnsl~~~~v~G~~ag~~aa~~~~ 398 (513)
T PRK07512 341 MGGIAVDADGRS-SLPGLWAAGEVASTGLHGANRLASNSLLEAVVFAARAAEDIAGTPA 398 (513)
T ss_pred cCCEEECCCCcc-ccCCEEecccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 477999999998 8999999999973 21111111134566788899999999887654
No 348
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.29 E-value=0.002 Score=65.58 Aligned_cols=33 Identities=21% Similarity=0.385 Sum_probs=29.1
Q ss_pred EEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCc
Q 010827 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVETT 281 (500)
Q Consensus 246 ~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~ 281 (500)
.|+|||+|+.|.-+|..|++.+.+ |+++++...
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~---v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLK---IALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCE---EEEEeCCCc
Confidence 389999999999999999988766 999998764
No 349
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=97.28 E-value=0.00029 Score=73.86 Aligned_cols=59 Identities=20% Similarity=0.147 Sum_probs=41.2
Q ss_pred CCCceEeCCCcccC-----CCCCEEEecccccc-cCCCCCCCCchHHHHHHHHHHHHHHHHHHHC
Q 010827 392 ARGQAETDETLCVK-----GHPRIFALGDSSAL-RDSSGRPLPATAQVAFQQADFAGWNLWAAIN 450 (500)
Q Consensus 392 ~~g~i~vd~~~~t~-----~~~~vyaiGD~~~~-~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 450 (500)
-.|.+.+|...|+. ..|++||+|.|+.. ......+.......++-.|+.+++++....+
T Consensus 398 t~GGl~~d~~~~vl~~~g~~I~GLYAaGe~~gg~~~g~~y~~g~~l~~~~~~G~iag~~aa~~~~ 462 (466)
T PRK08274 398 TYLGLKVDEDARVRFADGRPSPNLFAAGEMMAGNVLGKGYPAGVGLTIGAVFGRIAGEEAARHAQ 462 (466)
T ss_pred ecccEEECCCceEECCCCCCCCCceecccccccccccCCCccccchhhhhhhHHHHHHHHHHHhh
Confidence 35778888887763 48999999999754 2211111124566788999999999987654
No 350
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.28 E-value=0.0017 Score=66.70 Aligned_cols=32 Identities=25% Similarity=0.311 Sum_probs=28.7
Q ss_pred EEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCC
Q 010827 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVET 280 (500)
Q Consensus 246 ~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~ 280 (500)
+|+|||+|..|+-+|..|++.+.+ |+++++.+
T Consensus 4 dV~IVGaG~aGl~~A~~L~~~G~~---v~viE~~~ 35 (405)
T PRK05714 4 DLLIVGAGMVGSALALALQGSGLE---VLLLDGGP 35 (405)
T ss_pred cEEEECccHHHHHHHHHHhcCCCE---EEEEcCCC
Confidence 799999999999999999887765 99999865
No 351
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.27 E-value=0.00061 Score=71.68 Aligned_cols=81 Identities=26% Similarity=0.254 Sum_probs=62.5
Q ss_pred ccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCCCCcchHHHHHHHHHhCCcEEEcCceEEEEecCcccccc
Q 010827 244 LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEAS 323 (500)
Q Consensus 244 ~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~ 323 (500)
+++|+|||+|.+|+++|..|++.+.+ |+++++.+. .....+.+.|++.||+++.+..+.
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~---V~~~d~~~~-------~~~~~~~~~l~~~gv~~~~~~~~~----------- 74 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGAR---VTVVDDGDD-------ERHRALAAILEALGATVRLGPGPT----------- 74 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCch-------hhhHHHHHHHHHcCCEEEECCCcc-----------
Confidence 67999999999999999999888776 999987542 233445677888999998774322
Q ss_pred ccCCCCCcccccccccCCcceeEeecccccCCCccEEeecEEEEecCCCCCCCCCC
Q 010827 324 VKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE 379 (500)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~p~~~~~~ 379 (500)
....+|.||+++|..|+.+++.
T Consensus 75 ----------------------------------~~~~~D~Vv~s~Gi~~~~~~~~ 96 (480)
T PRK01438 75 ----------------------------------LPEDTDLVVTSPGWRPDAPLLA 96 (480)
T ss_pred ----------------------------------ccCCCCEEEECCCcCCCCHHHH
Confidence 1134899999999999988643
No 352
>PRK09126 hypothetical protein; Provisional
Probab=97.26 E-value=0.0024 Score=65.29 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=29.8
Q ss_pred EEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCc
Q 010827 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVETT 281 (500)
Q Consensus 246 ~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~ 281 (500)
+|+|||||+.|+-+|..|++.+.+ |+++++...
T Consensus 5 dviIvGgG~aGl~~A~~L~~~G~~---v~v~E~~~~ 37 (392)
T PRK09126 5 DIVVVGAGPAGLSFARSLAGSGLK---VTLIERQPL 37 (392)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCc---EEEEeCCCc
Confidence 799999999999999999998776 999998654
No 353
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.24 E-value=0.0027 Score=67.74 Aligned_cols=34 Identities=24% Similarity=0.231 Sum_probs=29.1
Q ss_pred ccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCC
Q 010827 244 LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVET 280 (500)
Q Consensus 244 ~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~ 280 (500)
..+|+|||+|++|+-+|..|++.+.+ |+++++..
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~---v~v~Er~~ 43 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVR---VLVLERWP 43 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCC
Confidence 35899999999999999999988766 88888754
No 354
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=97.24 E-value=0.00034 Score=72.17 Aligned_cols=34 Identities=32% Similarity=0.691 Sum_probs=29.7
Q ss_pred eEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCc
Q 010827 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF 120 (500)
Q Consensus 81 ~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~ 120 (500)
||||||+|.|||+||+.|++ .|.+|+|+||.+..
T Consensus 1 DVvVIG~G~AGl~AA~~Aae------~G~~V~lvek~~~~ 34 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAE------AGAKVLLVEKGPRL 34 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHH------TTT-EEEEESSSGG
T ss_pred CEEEECCCHHHHHHHHHHhh------hcCeEEEEEeeccc
Confidence 79999999999999999999 78999999999863
No 355
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.23 E-value=0.0013 Score=67.85 Aligned_cols=64 Identities=9% Similarity=0.016 Sum_probs=42.8
Q ss_pred ccEEEEECCChhHHHHHHHHH-HHHhhcCeEEEEecCCccCCCC----C---cc---hHHHHHHHHHhCCcEEEcCce
Q 010827 244 LIRVAVVGCGYSGVELAATVS-ERLEEKGIVQAINVETTICPTG----T---PG---NREAALKVLSARKVQLVLGYF 310 (500)
Q Consensus 244 ~k~V~VvGgG~~g~e~A~~l~-~~~~~~~~vtlv~~~~~~~~~~----~---~~---~~~~~~~~l~~~gV~i~~~~~ 310 (500)
+++|+|||+|++|+.+|..|+ +.+.+ |+++++.+.+.-.. . +. +...+...+...++++..+..
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~---VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~ 113 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVK---VDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVH 113 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCe---EEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeE
Confidence 689999999999999999765 44444 99999987764221 1 11 222233345557888875543
No 356
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.21 E-value=0.0027 Score=64.83 Aligned_cols=98 Identities=24% Similarity=0.339 Sum_probs=69.8
Q ss_pred cEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecC-CccCCCC-C-----------------------------------
Q 010827 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVE-TTICPTG-T----------------------------------- 287 (500)
Q Consensus 245 k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~-~~~~~~~-~----------------------------------- 287 (500)
.+|+|||||++|+-+|..|++.+.+ |+++++. ..+.+.. .
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~---V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~ 79 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLD---VTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDD 79 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCc---EEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEec
Confidence 4899999999999999999999876 9999986 2221110 0
Q ss_pred ------------------------cchHHHHHHHHHhCC-cEEEcCceEEEEecCccccccccCCCCCcccccccccCCc
Q 010827 288 ------------------------PGNREAALKVLSARK-VQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSD 342 (500)
Q Consensus 288 ------------------------~~~~~~~~~~l~~~g-V~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (500)
..+.+.+.+.+.+.+ |+++.++.|+.++.++ +
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~-----------------------~ 136 (387)
T COG0654 80 GGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDG-----------------------D 136 (387)
T ss_pred CCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcC-----------------------C
Confidence 112233455555554 8888888888888765 4
Q ss_pred ceeEeecccccCCCccEEeecEEEEecCCCC
Q 010827 343 KYILELQPAIKGLESQIFEADLVLWTVGSKP 373 (500)
Q Consensus 343 ~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~p 373 (500)
.+.+.+. . +++++.||+||-|-|...
T Consensus 137 ~v~v~l~----~-dG~~~~a~llVgADG~~S 162 (387)
T COG0654 137 GVTVTLS----F-DGETLDADLLVGADGANS 162 (387)
T ss_pred ceEEEEc----C-CCcEEecCEEEECCCCch
Confidence 5555542 1 566999999999999654
No 357
>PLN02676 polyamine oxidase
Probab=97.21 E-value=0.0004 Score=72.88 Aligned_cols=42 Identities=24% Similarity=0.468 Sum_probs=35.8
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCC-eEEEEcCCCCcccCc
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKP-QVLLVDQSERFVFKP 124 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~-~V~lie~~~~~~~~~ 124 (500)
...++|+|||||++||+||.+|++ .|+ +|+|+|++++++...
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~------~g~~~v~vlE~~~~~GG~~ 66 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSE------AGIEDILILEATDRIGGRM 66 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHH------cCCCcEEEecCCCCCCCcc
Confidence 345799999999999999999999 577 699999999865543
No 358
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.21 E-value=0.00037 Score=73.56 Aligned_cols=37 Identities=30% Similarity=0.354 Sum_probs=33.5
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCccc
Q 010827 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF 122 (500)
Q Consensus 80 ~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~ 122 (500)
+||||||||.+||++|..|++ .|++|+|+||++..+.
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~------~G~~V~vlE~~~~~GG 37 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAV------KGAKVLVLERYLIPGG 37 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHH------CCCcEEEEECCCCCCC
Confidence 479999999999999999999 7999999999987544
No 359
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.20 E-value=0.003 Score=64.38 Aligned_cols=35 Identities=26% Similarity=0.313 Sum_probs=30.3
Q ss_pred cEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCcc
Q 010827 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTI 282 (500)
Q Consensus 245 k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~ 282 (500)
-+|+|||||+.|+-+|..|++.+.+ |+++++....
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~---v~v~E~~~~~ 40 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLR---VALLAPRAPP 40 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCe---EEEEecCCCc
Confidence 3899999999999999999988766 9999987553
No 360
>PRK06753 hypothetical protein; Provisional
Probab=97.19 E-value=0.002 Score=65.35 Aligned_cols=34 Identities=26% Similarity=0.547 Sum_probs=30.2
Q ss_pred EEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCcc
Q 010827 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTI 282 (500)
Q Consensus 246 ~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~ 282 (500)
+|+|||||++|+-+|..|++.+.+ |+++++.+.+
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~---v~v~E~~~~~ 35 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHE---VKVFEKNESV 35 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCcc
Confidence 799999999999999999998776 9999987643
No 361
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=97.18 E-value=0.00024 Score=71.48 Aligned_cols=39 Identities=15% Similarity=0.326 Sum_probs=34.8
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCc
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF 120 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~ 120 (500)
+.+|||+||||..|-+.+..|+++ .+..+|+|+||.+..
T Consensus 2 ~~~DVvLIGgGImsaTL~~~L~~l----~p~~~I~i~Erl~~~ 40 (488)
T PF06039_consen 2 KEYDVVLIGGGIMSATLGYLLKEL----EPDWSIAIFERLDSV 40 (488)
T ss_pred CceeEEEECchHHHHHHHHHHHHh----CCCCeEEEEEecCcc
Confidence 358999999999999999999996 489999999998753
No 362
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.17 E-value=0.00098 Score=71.53 Aligned_cols=67 Identities=22% Similarity=0.207 Sum_probs=50.2
Q ss_pred CCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCC---------CCCcchHHHHHHHHHhCCcEEEcCceE
Q 010827 242 DSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICP---------TGTPGNREAALKVLSARKVQLVLGYFV 311 (500)
Q Consensus 242 ~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~---------~~~~~~~~~~~~~l~~~gV~i~~~~~v 311 (500)
..+++|+|||+|+.|+.+|..|++.+.+ |+++++.+.+.. .++....+.-.+.+.+.|++++.++.+
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~---V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~ 210 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHA---VTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRV 210 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence 3478999999999999999999988776 999997665421 122334444456677899999988654
No 363
>PRK08013 oxidoreductase; Provisional
Probab=97.15 E-value=0.0032 Score=64.57 Aligned_cols=34 Identities=18% Similarity=0.312 Sum_probs=30.2
Q ss_pred cEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCc
Q 010827 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETT 281 (500)
Q Consensus 245 k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~ 281 (500)
.+|+|||+|+.|+-+|..|++.+.+ |+++++.+.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~---v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLR---VAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCE---EEEEeCCCC
Confidence 3899999999999999999988776 999998764
No 364
>PRK07121 hypothetical protein; Validated
Probab=97.15 E-value=0.00065 Score=71.67 Aligned_cols=36 Identities=17% Similarity=0.395 Sum_probs=33.0
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCC
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (500)
...||||||+|.|||+||..+++ .|.+|+|+||.+.
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae------~G~~VillEK~~~ 54 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAA------AGARVLVLERAAG 54 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHH------CCCeEEEEeCCCC
Confidence 45899999999999999999999 6899999999875
No 365
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.15 E-value=0.00038 Score=70.84 Aligned_cols=34 Identities=24% Similarity=0.246 Sum_probs=30.7
Q ss_pred EEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCcc
Q 010827 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTI 282 (500)
Q Consensus 246 ~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~ 282 (500)
+|+|||||.+|+++|..|++.+.+ |+++++.+..
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~---V~LiE~rp~~ 35 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVP---VILYEMRPEK 35 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCc---EEEEeccccc
Confidence 799999999999999999998887 9999976654
No 366
>PRK13984 putative oxidoreductase; Provisional
Probab=97.14 E-value=0.0011 Score=71.68 Aligned_cols=66 Identities=20% Similarity=0.134 Sum_probs=50.8
Q ss_pred CccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCC---------CCCcchHHHHHHHHHhCCcEEEcCceE
Q 010827 243 SLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICP---------TGTPGNREAALKVLSARKVQLVLGYFV 311 (500)
Q Consensus 243 ~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~---------~~~~~~~~~~~~~l~~~gV~i~~~~~v 311 (500)
.+++|+|||+|+.|+.+|..|++.+.+ |+++++.+.+.. ..+..+.....+.+++.|++++.++.+
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~---v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v 356 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYE---VTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRV 356 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEe
Confidence 478999999999999999999988766 999988765421 122333444456788899999999776
No 367
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.14 E-value=0.00089 Score=73.08 Aligned_cols=94 Identities=16% Similarity=0.139 Sum_probs=70.0
Q ss_pred CccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCC---------CCcchHHHHHHHHHhCCcEEEcCceEEE
Q 010827 243 SLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPT---------GTPGNREAALKVLSARKVQLVLGYFVRC 313 (500)
Q Consensus 243 ~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~---------~~~~~~~~~~~~l~~~gV~i~~~~~v~~ 313 (500)
.+|+|.|||+|+.|+.+|..|-+.+.. |++++|.+++..- ++....++-.+.|.+.||+|+++++|-.
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~---v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk 1860 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHT---VTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGK 1860 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcE---EEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeeccccc
Confidence 479999999999999999999998887 9999999876432 1233445556778999999999976521
Q ss_pred EecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccEEeecEEEEecCCCCCCCC
Q 010827 314 IRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPH 377 (500)
Q Consensus 314 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~p~~~~ 377 (500)
.+.+ ++-.-+.|.||+|+|..-..++
T Consensus 1861 -----------------------------~vs~---------d~l~~~~daiv~a~gst~prdl 1886 (2142)
T KOG0399|consen 1861 -----------------------------HVSL---------DELKKENDAIVLATGSTTPRDL 1886 (2142)
T ss_pred -----------------------------cccH---------HHHhhccCeEEEEeCCCCCcCC
Confidence 1111 3344467999999998855444
No 368
>PRK10015 oxidoreductase; Provisional
Probab=97.12 E-value=0.0037 Score=64.66 Aligned_cols=32 Identities=25% Similarity=0.264 Sum_probs=28.2
Q ss_pred EEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCC
Q 010827 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVET 280 (500)
Q Consensus 246 ~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~ 280 (500)
.|+|||+|+.|.-+|..|++.+.+ |.++++.+
T Consensus 7 DViIVGgGpAG~~aA~~LA~~G~~---VlliEr~~ 38 (429)
T PRK10015 7 DAIVVGAGVAGSVAALVMARAGLD---VLVIERGD 38 (429)
T ss_pred CEEEECcCHHHHHHHHHHHhCCCe---EEEEecCC
Confidence 899999999999999999988776 88888654
No 369
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=97.12 E-value=0.00089 Score=65.78 Aligned_cols=106 Identities=20% Similarity=0.225 Sum_probs=74.6
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEEe
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFKD 157 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 157 (500)
.++.|.|||+|+-|-+.|+.|.++.. ..|.+|.-+=.+.+ ..+.+.++.+..+..+.+++.||+++.+
T Consensus 346 ek~siTIiGnGflgSELacsl~rk~r--~~g~eV~QvF~Ek~----------nm~kiLPeyls~wt~ekir~~GV~V~pn 413 (659)
T KOG1346|consen 346 EKQSITIIGNGFLGSELACSLKRKYR--NEGVEVHQVFEEKY----------NMEKILPEYLSQWTIEKIRKGGVDVRPN 413 (659)
T ss_pred hcceEEEEcCcchhhhHHHHHHHhhh--ccCcEEEEeecccC----------ChhhhhHHHHHHHHHHHHHhcCceeccc
Confidence 45789999999999999999998753 35667664433222 1233344455555566777889999875
Q ss_pred -eEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCCCCC
Q 010827 158 -RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLD 206 (500)
Q Consensus 158 -~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p~~~ 206 (500)
.|.++....+ +-.+.+.||.+++.|.||+|+|..|+..
T Consensus 414 a~v~sv~~~~~-----------nl~lkL~dG~~l~tD~vVvavG~ePN~e 452 (659)
T KOG1346|consen 414 AKVESVRKCCK-----------NLVLKLSDGSELRTDLVVVAVGEEPNSE 452 (659)
T ss_pred hhhhhhhhhcc-----------ceEEEecCCCeeeeeeEEEEecCCCchh
Confidence 5555543322 1257888999999999999999998753
No 370
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.12 E-value=0.0037 Score=63.46 Aligned_cols=31 Identities=19% Similarity=0.431 Sum_probs=28.1
Q ss_pred EEEEECCChhHHHHHHHHHHHHhhcCeEEEEecC
Q 010827 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVE 279 (500)
Q Consensus 246 ~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~ 279 (500)
+|+|||||++|+-+|..|++.+.+ |+++++.
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~---v~l~E~~ 33 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIK---TTIFESK 33 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCe---EEEecCC
Confidence 799999999999999999988776 9999975
No 371
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=97.09 E-value=0.0017 Score=67.24 Aligned_cols=55 Identities=24% Similarity=0.091 Sum_probs=37.6
Q ss_pred CCceEeCCCcccCC-----CCCEEEecccccc-cCCCCCCC--CchHHHHHHHHHHHHHHHHHHH
Q 010827 393 RGQAETDETLCVKG-----HPRIFALGDSSAL-RDSSGRPL--PATAQVAFQQADFAGWNLWAAI 449 (500)
Q Consensus 393 ~g~i~vd~~~~t~~-----~~~vyaiGD~~~~-~~~~~~~~--~~~~~~A~~~g~~aa~~i~~~l 449 (500)
.|.+.+|...|+.. .|++||+|.++.. .. +..+ -.....|+..|+.+++++.+..
T Consensus 368 ~GGl~id~~~~Vl~~~g~~I~GLYAaG~~~~g~~~--g~~y~~G~~~~~a~~~GriAg~~aa~~~ 430 (432)
T TIGR02485 368 RYGLVVDATARVRLNDAVAPDNLFAAGTNMAGNVL--GQGYLAGAGLTIAAVFGRIAGRAAARLA 430 (432)
T ss_pred ccceEECCCceEECCCCCCCCCeeecccccccccc--cCCCccchhhHHHHHHHHHHHHHHHHhh
Confidence 46677777777533 5999999998641 11 1111 2356778999999999987653
No 372
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.09 E-value=0.0005 Score=72.02 Aligned_cols=36 Identities=25% Similarity=0.363 Sum_probs=32.9
Q ss_pred eEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCccc
Q 010827 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF 122 (500)
Q Consensus 81 ~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~ 122 (500)
+|+|||||.+||++|..|++ +|++|+|+|+++.++.
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~------~G~~v~v~E~~~~~GG 36 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVD------AGHEVDIYESRSFIGG 36 (474)
T ss_pred CEEEECCCHHHHHHHHHHHH------CCCcEEEEEecCCCCc
Confidence 58999999999999999998 7999999999987654
No 373
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.07 E-value=0.0022 Score=60.27 Aligned_cols=42 Identities=24% Similarity=0.355 Sum_probs=34.6
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (500)
...++|+|||||..|.++|++|.++.-.....+.|+|||+..
T Consensus 8 ~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~ 49 (380)
T KOG2852|consen 8 GNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKE 49 (380)
T ss_pred CCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecc
Confidence 455999999999999999999999642223458999999986
No 374
>PRK06996 hypothetical protein; Provisional
Probab=97.07 E-value=0.0039 Score=63.92 Aligned_cols=102 Identities=16% Similarity=0.195 Sum_probs=66.1
Q ss_pred cEEEEECCChhHHHHHHHHHHHHhhc-CeEEEEecCCccCCCC-------------------------------------
Q 010827 245 IRVAVVGCGYSGVELAATVSERLEEK-GIVQAINVETTICPTG------------------------------------- 286 (500)
Q Consensus 245 k~V~VvGgG~~g~e~A~~l~~~~~~~-~~vtlv~~~~~~~~~~------------------------------------- 286 (500)
.+|+|||||+.|.-+|..|++.+... -.|+++++.+......
T Consensus 12 ~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~ 91 (398)
T PRK06996 12 FDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQRG 91 (398)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEecCC
Confidence 48999999999999999998865210 1288888753210000
Q ss_pred --------------C--------cchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcce
Q 010827 287 --------------T--------PGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKY 344 (500)
Q Consensus 287 --------------~--------~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 344 (500)
+ ..+.+.+.+.+.+.|+++..++++++++.++ +++
T Consensus 92 ~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~-----------------------~~v 148 (398)
T PRK06996 92 HFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDA-----------------------DGV 148 (398)
T ss_pred CCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecC-----------------------CeE
Confidence 0 1123334555666778888887777776544 566
Q ss_pred eEeecccccCCCccEEeecEEEEecCCC
Q 010827 345 ILELQPAIKGLESQIFEADLVLWTVGSK 372 (500)
Q Consensus 345 ~l~~~~~~~~~~~~~l~~D~vi~a~G~~ 372 (500)
++.+. ++++++++.+|+||-|.|..
T Consensus 149 ~v~~~---~~~g~~~i~a~lvIgADG~~ 173 (398)
T PRK06996 149 TLALG---TPQGARTLRARIAVQAEGGL 173 (398)
T ss_pred EEEEC---CCCcceEEeeeEEEECCCCC
Confidence 66653 11123689999999999953
No 375
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=97.07 E-value=0.0029 Score=64.79 Aligned_cols=31 Identities=19% Similarity=0.254 Sum_probs=24.7
Q ss_pred EEECCChhHHHHHHHHHHHHhhcCeEEEEecCCc
Q 010827 248 AVVGCGYSGVELAATVSERLEEKGIVQAINVETT 281 (500)
Q Consensus 248 ~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~ 281 (500)
+|||+|.+|+-+|..+++.+.+ |+++++.+.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~---V~llEk~~~ 31 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLS---VLLLEKNKK 31 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCc---EEEEecCcc
Confidence 5889999999999988887665 888887554
No 376
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.07 E-value=0.00081 Score=66.56 Aligned_cols=42 Identities=26% Similarity=0.356 Sum_probs=35.8
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCccc
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF 122 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~ 122 (500)
...++|+|+|||.+||++|++|++++ ...+|+|+|+.++.+.
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~----p~~~i~l~Ea~~RvGG 50 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLG----PDVTITLFEASPRVGG 50 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcC----CCceEEEEecCCcccc
Confidence 44589999999999999999999954 6677888999998654
No 377
>PLN02612 phytoene desaturase
Probab=97.06 E-value=0.00078 Score=72.14 Aligned_cols=42 Identities=26% Similarity=0.339 Sum_probs=36.4
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCc
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP 124 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~ 124 (500)
..+++|+|||||++||+||.+|.+ .|++|+|+|+.+.++...
T Consensus 91 ~~~~~v~iiG~G~~Gl~~a~~l~~------~g~~~~~~e~~~~~gG~~ 132 (567)
T PLN02612 91 AKPLKVVIAGAGLAGLSTAKYLAD------AGHKPILLEARDVLGGKV 132 (567)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHh------cCCeEEEEecCCCCCCcc
Confidence 446899999999999999999999 789999999998765543
No 378
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.06 E-value=0.0045 Score=63.21 Aligned_cols=33 Identities=24% Similarity=0.351 Sum_probs=28.9
Q ss_pred cEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCC
Q 010827 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVET 280 (500)
Q Consensus 245 k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~ 280 (500)
-+|+|||||+.|+-+|..|++.+.+ |+++++.+
T Consensus 6 ~dViIvGgG~aGl~~A~~La~~G~~---V~liE~~~ 38 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQHGFS---VAVLEHAA 38 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhcCCCE---EEEEcCCC
Confidence 4899999999999999999987766 99998754
No 379
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=97.05 E-value=0.0054 Score=62.75 Aligned_cols=32 Identities=22% Similarity=0.428 Sum_probs=28.7
Q ss_pred EEEEECCChhHHHHHHHHHHH--HhhcCeEEEEecCC
Q 010827 246 RVAVVGCGYSGVELAATVSER--LEEKGIVQAINVET 280 (500)
Q Consensus 246 ~V~VvGgG~~g~e~A~~l~~~--~~~~~~vtlv~~~~ 280 (500)
+|+|||||.+|+-+|..|+++ +.+ |+++++..
T Consensus 4 dVvIIGgGi~G~s~A~~La~~~~g~~---V~llE~~~ 37 (393)
T PRK11728 4 DFVIIGGGIVGLSTAMQLQERYPGAR---IAVLEKES 37 (393)
T ss_pred cEEEECCcHHHHHHHHHHHHhCCCCe---EEEEeCCC
Confidence 799999999999999999998 655 99999864
No 380
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.05 E-value=0.0006 Score=73.33 Aligned_cols=58 Identities=21% Similarity=0.126 Sum_probs=42.7
Q ss_pred CCCceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHC
Q 010827 392 ARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIN 450 (500)
Q Consensus 392 ~~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 450 (500)
..|.|.||...+| +.|++||+|+|+.......+........++..|+.+++++...+.
T Consensus 354 ~~GGi~vd~~~~t-~I~GLyAaGE~~~g~hGanrlggnsl~~~lv~Gr~Ag~~aa~~~~ 411 (589)
T PRK08641 354 SMGGLWVDYDQMT-NIPGLFAAGECDYSYHGANRLGANSLLSAIYGGMVAGPNAVEYIK 411 (589)
T ss_pred eCCCeEECCCCCe-ECCCEEECcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 3578999998888 899999999997532211111234667888999999999887654
No 381
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.00 E-value=0.0052 Score=62.67 Aligned_cols=32 Identities=28% Similarity=0.376 Sum_probs=27.5
Q ss_pred EEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCC
Q 010827 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVET 280 (500)
Q Consensus 246 ~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~ 280 (500)
.|+|||+|+.|+-+|..|++.+.+ |+++++.+
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~---v~liE~~~ 32 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLR---VQLIEPHP 32 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCe---EEEEccCC
Confidence 389999999999999999877665 99999754
No 382
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=96.99 E-value=0.0015 Score=67.40 Aligned_cols=66 Identities=21% Similarity=0.169 Sum_probs=55.3
Q ss_pred ccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCC---------CCcchHHHHHHHHHhCCcEEEcCceEE
Q 010827 244 LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPT---------GTPGNREAALKVLSARKVQLVLGYFVR 312 (500)
Q Consensus 244 ~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~---------~~~~~~~~~~~~l~~~gV~i~~~~~v~ 312 (500)
+++|+|||+|+.|+.+|..|++.+.. |+++++.+..... ++..+.+...+.|++.|++|+.++++-
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~---Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG 197 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHD---VTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVG 197 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCe---EEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceEC
Confidence 57999999999999999999998888 9999987755321 345677788899999999999997753
No 383
>PRK07045 putative monooxygenase; Reviewed
Probab=96.99 E-value=0.0066 Score=61.96 Aligned_cols=35 Identities=26% Similarity=0.383 Sum_probs=30.3
Q ss_pred cEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCcc
Q 010827 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTI 282 (500)
Q Consensus 245 k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~ 282 (500)
.+|+|||||++|+-+|..|++.+.+ |+++++.+.+
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~---v~v~E~~~~~ 40 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHS---VTVVERAARN 40 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCc---EEEEeCCCcc
Confidence 4899999999999999999998776 8999876643
No 384
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=96.99 E-value=0.0065 Score=62.09 Aligned_cols=34 Identities=18% Similarity=0.276 Sum_probs=30.1
Q ss_pred cEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCc
Q 010827 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETT 281 (500)
Q Consensus 245 k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~ 281 (500)
.+|+|||+|+.|+-+|..|++.+.+ |+++++.+.
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~---v~v~E~~~~ 36 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGID---SVVLERRSR 36 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCC---EEEEEcCCc
Confidence 4899999999999999999998876 999998753
No 385
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=96.99 E-value=0.00084 Score=70.45 Aligned_cols=39 Identities=15% Similarity=0.331 Sum_probs=33.8
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCc
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF 120 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~ 120 (500)
..+||+|||||..|+++|++|++. .+|.+|+|+||.+..
T Consensus 4 ~~~DVvIIGgGIiG~slA~~L~~~----~~g~~V~VlEk~~~~ 42 (494)
T PRK05257 4 SKTDVVLIGGGIMSATLGTLLKEL----EPEWSITMFERLDGV 42 (494)
T ss_pred ccceEEEECcHHHHHHHHHHHHHh----CCCCeEEEEEcCCch
Confidence 447999999999999999999984 268999999998653
No 386
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.98 E-value=0.0064 Score=61.96 Aligned_cols=32 Identities=28% Similarity=0.331 Sum_probs=28.9
Q ss_pred EEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCC
Q 010827 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVET 280 (500)
Q Consensus 246 ~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~ 280 (500)
+|+|||||+.|.-+|..|++.+.+ |+++++.+
T Consensus 5 dv~IvGgG~aGl~~A~~L~~~G~~---v~l~E~~~ 36 (384)
T PRK08849 5 DIAVVGGGMVGAATALGFAKQGRS---VAVIEGGE 36 (384)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCc---EEEEcCCC
Confidence 799999999999999999988776 99999764
No 387
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=96.96 E-value=0.00091 Score=72.35 Aligned_cols=36 Identities=25% Similarity=0.370 Sum_probs=33.1
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCC
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (500)
..+||||||||..|.++|+.|++ +|++|+|||+++.
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~------rGl~V~LvE~~d~ 105 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAAT------RGLRVGLVEREDF 105 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHh------CCCEEEEEecccc
Confidence 34899999999999999999999 7999999999864
No 388
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=96.96 E-value=0.0072 Score=61.48 Aligned_cols=38 Identities=24% Similarity=0.325 Sum_probs=31.4
Q ss_pred cEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccC
Q 010827 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTIC 283 (500)
Q Consensus 245 k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~ 283 (500)
-.|+|||||.+|+-+|.+|+++.+... |+++++.+.+.
T Consensus 4 ~DvvIIGgGI~G~a~a~~Ls~~~p~~~-V~llEk~~~~a 41 (429)
T COG0579 4 YDVVIIGGGIMGAATAYELSEYEPDLS-VALLEKEDGVA 41 (429)
T ss_pred eeEEEECCcHHHHHHHHHHHHhCCCce-EEEEEccCccc
Confidence 389999999999999999999985433 89988865543
No 389
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=96.95 E-value=0.0043 Score=63.35 Aligned_cols=39 Identities=15% Similarity=0.244 Sum_probs=33.4
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCC
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (500)
.+++=|||+|.|+|+||.+|-+-. .-+|-+|+|+|+.+.
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa--~~pg~nIhIlE~~~~ 40 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDA--KMPGENIHILEELDV 40 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccC--CCCccceEEEeCCCC
Confidence 367889999999999999998854 347899999999874
No 390
>PLN02697 lycopene epsilon cyclase
Probab=96.92 E-value=0.0055 Score=64.66 Aligned_cols=96 Identities=21% Similarity=0.230 Sum_probs=63.8
Q ss_pred cEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCCC-----------------------------------C--
Q 010827 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTG-----------------------------------T-- 287 (500)
Q Consensus 245 k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~~-----------------------------------~-- 287 (500)
-.|+|||+|+.|+.+|..|++.+.+ |.++++...+.... .
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~---V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~ 185 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLN---VGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRA 185 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCc---EEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCc
Confidence 3899999999999999999887666 88887642221110 0
Q ss_pred ------cchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeE-eecccccCCCccEE
Q 010827 288 ------PGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYIL-ELQPAIKGLESQIF 360 (500)
Q Consensus 288 ------~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l-~~~~~~~~~~~~~l 360 (500)
..+.+.+.+.+.+.|+++ .+..|+.+..++ +.+.+ .+ .++.++
T Consensus 186 Yg~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~-----------------------~~~~vv~~------~dG~~i 235 (529)
T PLN02697 186 YGRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEAS-----------------------DGLRLVAC------EDGRVI 235 (529)
T ss_pred ccEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcC-----------------------CcEEEEEE------cCCcEE
Confidence 011233445556678887 456788877543 33222 21 256789
Q ss_pred eecEEEEecCCCC
Q 010827 361 EADLVLWTVGSKP 373 (500)
Q Consensus 361 ~~D~vi~a~G~~p 373 (500)
.+|.||.|+|...
T Consensus 236 ~A~lVI~AdG~~S 248 (529)
T PLN02697 236 PCRLATVASGAAS 248 (529)
T ss_pred ECCEEEECCCcCh
Confidence 9999999999876
No 391
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=96.90 E-value=0.0011 Score=65.62 Aligned_cols=35 Identities=40% Similarity=0.705 Sum_probs=32.0
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCC
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (500)
+.+|||||||.+|+++|..|.+ .|++|+|+|+.+.
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r------~G~~v~VlE~~e~ 36 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHR------KGIDVVVLESRED 36 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHH------cCCeEEEEeeccc
Confidence 4689999999999999999999 6899999999764
No 392
>PRK07538 hypothetical protein; Provisional
Probab=96.90 E-value=0.0091 Score=61.50 Aligned_cols=33 Identities=30% Similarity=0.441 Sum_probs=29.2
Q ss_pred EEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCc
Q 010827 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVETT 281 (500)
Q Consensus 246 ~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~ 281 (500)
+|+|||||..|+-+|..|++.+.+ |+++++.+.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~---v~v~E~~~~ 34 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIE---VVVFEAAPE 34 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCc---EEEEEcCCc
Confidence 799999999999999999988766 999988654
No 393
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.89 E-value=0.0068 Score=61.83 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=29.7
Q ss_pred cEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCc
Q 010827 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETT 281 (500)
Q Consensus 245 k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~ 281 (500)
.+|+|||+|..|+-+|..|++.+.+ |+++++.+.
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~---v~liE~~~~ 41 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGAS---VALVAPEPP 41 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCe---EEEEeCCCC
Confidence 3799999999999999999987765 999998654
No 394
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=96.88 E-value=0.0077 Score=61.64 Aligned_cols=96 Identities=16% Similarity=0.123 Sum_probs=70.0
Q ss_pred EEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCC------------------CC--------------------
Q 010827 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPT------------------GT-------------------- 287 (500)
Q Consensus 246 ~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~------------------~~-------------------- 287 (500)
.|+|||+|++|.-+|..|++.+.+ |.++++...+... ..
T Consensus 5 DVvIVGaGPAGs~aA~~la~~G~~---VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~ 81 (396)
T COG0644 5 DVVIVGAGPAGSSAARRLAKAGLD---VLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVA 81 (396)
T ss_pred eEEEECCchHHHHHHHHHHHcCCe---EEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceE
Confidence 899999999999999999998855 8888875543210 00
Q ss_pred -------------cchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccC
Q 010827 288 -------------PGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKG 354 (500)
Q Consensus 288 -------------~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~ 354 (500)
..+.+++.+..++.|++++.++.++.+..++ +++.+...
T Consensus 82 ~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~-----------------------~~~~~~~~----- 133 (396)
T COG0644 82 IEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIRED-----------------------DGVVVGVR----- 133 (396)
T ss_pred EecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeC-----------------------CcEEEEEE-----
Confidence 1223445667788999999999999998766 34333321
Q ss_pred CCccEEeecEEEEecCCC
Q 010827 355 LESQIFEADLVLWTVGSK 372 (500)
Q Consensus 355 ~~~~~l~~D~vi~a~G~~ 372 (500)
.+..++.++.||.|.|..
T Consensus 134 ~~~~e~~a~~vI~AdG~~ 151 (396)
T COG0644 134 AGDDEVRAKVVIDADGVN 151 (396)
T ss_pred cCCEEEEcCEEEECCCcc
Confidence 133789999999999954
No 395
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=96.88 E-value=0.02 Score=59.32 Aligned_cols=140 Identities=15% Similarity=0.208 Sum_probs=83.7
Q ss_pred cEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCC------------------------------C--CcchHH
Q 010827 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPT------------------------------G--TPGNRE 292 (500)
Q Consensus 245 k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~------------------------------~--~~~~~~ 292 (500)
.+|+|||+|.+|+-+|..|.+.+..+ +.++++...+... + ...+.+
T Consensus 9 ~~v~IIGaG~sGlaaa~~L~~~g~~~--~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~ 86 (443)
T COG2072 9 TDVAIIGAGQSGLAAAYALKQAGVPD--FVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKD 86 (443)
T ss_pred ccEEEECCCHHHHHHHHHHHHcCCCc--EEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHH
Confidence 58999999999999999999988765 7888876533210 0 023677
Q ss_pred HHHHHHHhCCcEE--EcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccEEeecEEEEecC
Q 010827 293 AALKVLSARKVQL--VLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG 370 (500)
Q Consensus 293 ~~~~~l~~~gV~i--~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G 370 (500)
++...+++.++.. ..++.|..+..+.+. +..++... .+...+ +.+|.||+|||
T Consensus 87 y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~---------------------~~w~V~~~---~~~~~~-~~a~~vV~ATG 141 (443)
T COG2072 87 YIKDYLEKYGLRFQIRFNTRVEVADWDEDT---------------------KRWTVTTS---DGGTGE-LTADFVVVATG 141 (443)
T ss_pred HHHHHHHHcCceeEEEcccceEEEEecCCC---------------------CeEEEEEc---CCCeee-EecCEEEEeec
Confidence 8888888876543 344455554443311 34444432 121122 77999999999
Q ss_pred CC--CCCCCCCCCCCccCCCCCCCCCceEeCCCccc---CCCCCEEEecccccc
Q 010827 371 SK--PLLPHVEPPNNRLHDLPLNARGQAETDETLCV---KGHPRIFALGDSSAL 419 (500)
Q Consensus 371 ~~--p~~~~~~~~~~~~~~~~~~~~g~i~vd~~~~t---~~~~~vyaiGD~~~~ 419 (500)
+- |+.+-+. |.+ +-.|.+..-..+.. ...++|-+||-.++.
T Consensus 142 ~~~~P~iP~~~-------G~~-~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA 187 (443)
T COG2072 142 HLSEPYIPDFA-------GLD-EFKGRILHSADWPNPEDLRGKRVLVIGAGASA 187 (443)
T ss_pred CCCCCCCCCCC-------Ccc-CCCceEEchhcCCCccccCCCeEEEECCCccH
Confidence 83 3322222 121 22454544322221 146788888876663
No 396
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=96.88 E-value=0.0058 Score=61.85 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=28.3
Q ss_pred EEEEECCChhHHHHHHHHHHH--HhhcCeEEEEecCCccC
Q 010827 246 RVAVVGCGYSGVELAATVSER--LEEKGIVQAINVETTIC 283 (500)
Q Consensus 246 ~V~VvGgG~~g~e~A~~l~~~--~~~~~~vtlv~~~~~~~ 283 (500)
.|+|||+|..|+.+|..|++. +.+ |.++++.+.+.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~---V~lle~~~~~~ 37 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFR---IRVIEAGRTIG 37 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCe---EEEEeCCCCCC
Confidence 389999999999999999876 333 99999876443
No 397
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=96.87 E-value=0.0012 Score=70.65 Aligned_cols=35 Identities=31% Similarity=0.567 Sum_probs=32.3
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (500)
...||||||+|.|||+||..+++ .|.+|+|+||.+
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~------~G~~VivlEK~~ 37 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELAD------AGKRVLLLDQEN 37 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHH------CCCeEEEEeCCC
Confidence 34799999999999999999998 689999999987
No 398
>PLN03000 amine oxidase
Probab=96.87 E-value=0.0014 Score=71.88 Aligned_cols=41 Identities=24% Similarity=0.294 Sum_probs=36.2
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCc
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKP 124 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~ 124 (500)
..++|+|||||++||.||..|.+ .|++|+|+|+.++.+.+.
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~------~G~~V~VlE~~~riGGRi 223 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMR------FGFKVTVLEGRKRPGGRV 223 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHH------CCCcEEEEEccCcCCCCc
Confidence 45899999999999999999998 689999999999865543
No 399
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.86 E-value=0.0089 Score=61.04 Aligned_cols=32 Identities=31% Similarity=0.349 Sum_probs=28.4
Q ss_pred cEEEEECCChhHHHHHHHHHHH---HhhcCeEEEEecC
Q 010827 245 IRVAVVGCGYSGVELAATVSER---LEEKGIVQAINVE 279 (500)
Q Consensus 245 k~V~VvGgG~~g~e~A~~l~~~---~~~~~~vtlv~~~ 279 (500)
-+|+|||+|+.|.-+|..|++. +.+ |+++++.
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~---v~v~E~~ 38 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLP---VALIEAF 38 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCE---EEEEeCC
Confidence 3799999999999999999887 666 9999984
No 400
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=96.86 E-value=0.0011 Score=70.33 Aligned_cols=34 Identities=24% Similarity=0.449 Sum_probs=31.5
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCC
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (500)
..||||||+| |||+||..+++ .|.+|+||||.+.
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~------~G~~V~vlEk~~~ 40 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAR------EGLSVALVEATDK 40 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHH------CCCcEEEEecCCC
Confidence 5799999999 99999999998 7999999999874
No 401
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=96.86 E-value=0.001 Score=65.07 Aligned_cols=37 Identities=30% Similarity=0.470 Sum_probs=30.0
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcc
Q 010827 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV 121 (500)
Q Consensus 80 ~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~ 121 (500)
+|+||||+|++|..+|.+|++. .+.+|+|+|+.+...
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~-----~~~~VlvlEaG~~~~ 37 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEA-----GNKKVLVLEAGPRYP 37 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTS-----TTS-EEEEESSBSCT
T ss_pred CCEEEECcCHHHHHHHHHHhhC-----CCCcEEEEEccccCc
Confidence 5899999999999999999982 347999999997643
No 402
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=96.86 E-value=0.0035 Score=59.84 Aligned_cols=32 Identities=25% Similarity=0.559 Sum_probs=28.8
Q ss_pred eEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC
Q 010827 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (500)
Q Consensus 81 ~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (500)
.|||||+|.|||+|+..+.. .|-.|+|+|++.
T Consensus 11 pvvVIGgGLAGLsasn~iin------~gg~V~llek~~ 42 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIIN------KGGIVILLEKAG 42 (477)
T ss_pred cEEEECCchhhhhhHHHHHh------cCCeEEEEeccC
Confidence 69999999999999999988 455799999986
No 403
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=96.86 E-value=0.0081 Score=61.68 Aligned_cols=32 Identities=31% Similarity=0.499 Sum_probs=28.7
Q ss_pred cEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecC
Q 010827 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVE 279 (500)
Q Consensus 245 k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~ 279 (500)
.+|+|||+|+.|+-+|..|++.+.+ |+++++.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~G~~---v~viE~~ 36 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKESDLR---IAVIEGQ 36 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCE---EEEEcCC
Confidence 4899999999999999999987766 9999985
No 404
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.84 E-value=0.0083 Score=63.63 Aligned_cols=104 Identities=13% Similarity=0.116 Sum_probs=76.2
Q ss_pred cEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCC-------CCc--chHH---HHHHHHHhCCcEEEcCceEE
Q 010827 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPT-------GTP--GNRE---AALKVLSARKVQLVLGYFVR 312 (500)
Q Consensus 245 k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~-------~~~--~~~~---~~~~~l~~~gV~i~~~~~v~ 312 (500)
.+++|||.|..|..+...+.+...+...+|++...+.+... +.+ .+.+ .-.+..+++||+++++..+.
T Consensus 4 ~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v~ 83 (793)
T COG1251 4 QKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKVI 83 (793)
T ss_pred eeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCeeE
Confidence 58999999999999999998866655558888765543221 111 1222 22467889999999999999
Q ss_pred EEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccEEeecEEEEecCCCCCCCCCC
Q 010827 313 CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVE 379 (500)
Q Consensus 313 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~p~~~~~~ 379 (500)
.|.... ..|.- ..+.++.+|-+|+|||..|...-.+
T Consensus 84 ~idr~~-----------------------k~V~t--------~~g~~~~YDkLilATGS~pfi~PiP 119 (793)
T COG1251 84 QIDRAN-----------------------KVVTT--------DAGRTVSYDKLIIATGSYPFILPIP 119 (793)
T ss_pred EeccCc-----------------------ceEEc--------cCCcEeecceeEEecCccccccCCC
Confidence 999854 23333 2789999999999999999865443
No 405
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=96.83 E-value=0.026 Score=51.52 Aligned_cols=107 Identities=13% Similarity=0.059 Sum_probs=64.9
Q ss_pred cEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCCC-------C------------------------------
Q 010827 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTG-------T------------------------------ 287 (500)
Q Consensus 245 k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~~-------~------------------------------ 287 (500)
..|+|||+|++|+-+|..|++.+.+ |.+++++..+.... +
T Consensus 18 ~DV~IVGaGpaGl~aA~~La~~g~k---V~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d 94 (230)
T PF01946_consen 18 YDVAIVGAGPAGLTAAYYLAKAGLK---VAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVAD 94 (230)
T ss_dssp ESEEEE--SHHHHHHHHHHHHHTS----EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-
T ss_pred CCEEEECCChhHHHHHHHHHHCCCe---EEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEc
Confidence 5899999999999999999999877 99999876543221 0
Q ss_pred -cchHHHHHHHHHhCCcEEEcCceEEEEecCc-cccccccCCCCCcccccccccCCcceeEeecccccC---CCccEEee
Q 010827 288 -PGNREAALKVLSARKVQLVLGYFVRCIRRVG-EFEASVKQPESGAIPNIAADKNSDKYILELQPAIKG---LESQIFEA 362 (500)
Q Consensus 288 -~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~---~~~~~l~~ 362 (500)
.+....+....-+.|+++.....+..+.-.+ ... .++.+.+..-... =|.-.+.+
T Consensus 95 ~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV--------------------~GvViNWt~V~~~glHvDPl~i~a 154 (230)
T PF01946_consen 95 SVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRV--------------------AGVVINWTPVEMAGLHVDPLTIRA 154 (230)
T ss_dssp HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEE--------------------EEEEEEEHHHHTT--T-B-EEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeE--------------------EEEEEEehHHhHhhcCCCcceEEE
Confidence 1111222333345899999998888875433 222 3455543321111 14568999
Q ss_pred cEEEEecCCCCC
Q 010827 363 DLVLWTVGSKPL 374 (500)
Q Consensus 363 D~vi~a~G~~p~ 374 (500)
..||-+||...+
T Consensus 155 k~ViDaTGHda~ 166 (230)
T PF01946_consen 155 KVVIDATGHDAE 166 (230)
T ss_dssp SEEEE---SSSS
T ss_pred eEEEeCCCCchH
Confidence 999999998765
No 406
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.83 E-value=0.0012 Score=71.08 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=31.4
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (500)
..||||||+|.|||.||..+++ .|.+|+|+||..
T Consensus 12 ~~DVlVIG~G~AGl~AAi~Aa~------~G~~V~vleK~~ 45 (591)
T PRK07057 12 KFDVVIVGAGGSGMRASLQLAR------AGLSVAVLSKVF 45 (591)
T ss_pred cCCEEEECccHHHHHHHHHHHH------CCCcEEEEeccC
Confidence 4799999999999999999998 689999999975
No 407
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=96.82 E-value=0.011 Score=60.87 Aligned_cols=34 Identities=32% Similarity=0.545 Sum_probs=29.8
Q ss_pred EEEEECCChhHHHHHHHHHHHHh-hcCeEEEEecCCcc
Q 010827 246 RVAVVGCGYSGVELAATVSERLE-EKGIVQAINVETTI 282 (500)
Q Consensus 246 ~V~VvGgG~~g~e~A~~l~~~~~-~~~~vtlv~~~~~~ 282 (500)
+|+|||||..|+-+|..|++.+. + |+|+++.+.+
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~---v~v~Er~~~~ 36 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLN---VQLFEAAPAF 36 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCC---EEEEecCCcC
Confidence 79999999999999999998763 5 9999987654
No 408
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=96.82 E-value=0.013 Score=60.03 Aligned_cols=32 Identities=31% Similarity=0.349 Sum_probs=28.8
Q ss_pred EEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCC
Q 010827 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVET 280 (500)
Q Consensus 246 ~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~ 280 (500)
+|+|||+|+.|.-+|..|++.+.+ |.++++..
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~---V~llE~~~ 33 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQ---TFLLERKP 33 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCc---EEEEecCC
Confidence 799999999999999999988876 99998754
No 409
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=96.81 E-value=0.0069 Score=64.33 Aligned_cols=31 Identities=26% Similarity=0.282 Sum_probs=28.8
Q ss_pred EEEEECCChhHHHHHHHHHHHHhhcCeEEEEecC
Q 010827 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVE 279 (500)
Q Consensus 246 ~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~ 279 (500)
.|+|||||..|+++|..+++.+.+ |.++++.
T Consensus 6 DVIVVGGGpAG~eAA~~aAR~G~k---V~LiE~~ 36 (618)
T PRK05192 6 DVIVVGGGHAGCEAALAAARMGAK---TLLLTHN 36 (618)
T ss_pred eEEEECchHHHHHHHHHHHHcCCc---EEEEecc
Confidence 799999999999999999998887 9999886
No 410
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=96.81 E-value=0.0034 Score=69.56 Aligned_cols=35 Identities=23% Similarity=0.221 Sum_probs=31.8
Q ss_pred CCccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecC
Q 010827 242 DSLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVE 279 (500)
Q Consensus 242 ~~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~ 279 (500)
..+|+|+|||+|+.|+.+|..|++.+.+ ||+++..
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~---Vtv~E~~ 415 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHN---VTAIDGL 415 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCe---EEEEccc
Confidence 4589999999999999999999998877 9999975
No 411
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=96.81 E-value=0.012 Score=60.16 Aligned_cols=31 Identities=32% Similarity=0.328 Sum_probs=28.0
Q ss_pred EEEEECCChhHHHHHHHHHHHHhhcCeEEEEecC
Q 010827 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVE 279 (500)
Q Consensus 246 ~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~ 279 (500)
+|+|||+|++|.-+|..|++.+.+ |.++++.
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~---V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIE---TILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCc---EEEEECC
Confidence 699999999999999999988766 8898876
No 412
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=96.80 E-value=0.0012 Score=71.29 Aligned_cols=45 Identities=18% Similarity=0.056 Sum_probs=36.3
Q ss_pred CCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHCC
Q 010827 400 ETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 451 (500)
Q Consensus 400 ~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 451 (500)
..++| +.|++||+|||+... ..++...+..+|+.++.++...+..
T Consensus 389 ~~~~T-~v~glyA~Ge~~~~~------~~~l~~~s~~~g~~ag~~~~~~~~~ 433 (608)
T PRK06854 389 YNRMT-TVEGLFAAGDVVGGS------PHKFSSGSFAEGRIAAKAAVRYILD 433 (608)
T ss_pred ccccc-CCCCEEEeeecCCCC------cchhHHHHHHHHHHHHHHHHHHHHh
Confidence 88899 999999999997531 1356778888999999999877643
No 413
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.79 E-value=0.012 Score=59.76 Aligned_cols=32 Identities=22% Similarity=0.213 Sum_probs=28.2
Q ss_pred EEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCC
Q 010827 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVET 280 (500)
Q Consensus 246 ~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~ 280 (500)
+|+|||+|.+|+-+|..|++.+.+ |+++++..
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~~---V~l~e~~~ 33 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGKK---TLLLEQFD 33 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCe---EEEEeccC
Confidence 689999999999999999988765 99998854
No 414
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=96.78 E-value=0.014 Score=51.17 Aligned_cols=33 Identities=15% Similarity=0.264 Sum_probs=26.2
Q ss_pred EEECCChhHHHHHHHHHHHH--hhcCeEEEEecCC
Q 010827 248 AVVGCGYSGVELAATVSERL--EEKGIVQAINVET 280 (500)
Q Consensus 248 ~VvGgG~~g~e~A~~l~~~~--~~~~~vtlv~~~~ 280 (500)
+|||+|++|+-++..|.+.. .....|+++++.+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~ 35 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP 35 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence 59999999999999999886 3333489988743
No 415
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.78 E-value=0.0024 Score=64.01 Aligned_cols=45 Identities=22% Similarity=0.192 Sum_probs=35.6
Q ss_pred CCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHCCCC
Q 010827 400 ETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRP 453 (500)
Q Consensus 400 ~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~ 453 (500)
+.++|+.++++|.+|-..+. .-...|..||-.++.|......+++
T Consensus 381 ~sLeTkkV~GLF~AGQINGT---------TGYEEAAAQGIiAGiNA~~~a~~~~ 425 (679)
T KOG2311|consen 381 PSLETKKVQGLFFAGQINGT---------TGYEEAAAQGIIAGINASLRASGKP 425 (679)
T ss_pred hhhhhhhccceEEeeeecCc---------cchHHHHhhhhHhhhhhhhhhcCCC
Confidence 56788889999999999885 3456888999999999876555543
No 416
>PRK06185 hypothetical protein; Provisional
Probab=96.77 E-value=0.012 Score=60.37 Aligned_cols=34 Identities=18% Similarity=0.274 Sum_probs=29.5
Q ss_pred ccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCC
Q 010827 244 LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVET 280 (500)
Q Consensus 244 ~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~ 280 (500)
..+|+|||||.+|+-+|..|++.+.+ |+++++.+
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~---v~liE~~~ 39 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVD---VTVLEKHA 39 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCc---EEEEecCC
Confidence 35899999999999999999987765 99999764
No 417
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.75 E-value=0.0018 Score=69.50 Aligned_cols=36 Identities=25% Similarity=0.500 Sum_probs=32.8
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCC
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (500)
...||||||+|.|||+||+.+++ .|.+|+|+||.+.
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae------~G~~VivlEk~~~ 45 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAA------RGLDTLVVEKSAH 45 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHH------CCCcEEEEEcCCC
Confidence 35899999999999999999998 7899999999874
No 418
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=96.75 E-value=0.0013 Score=67.96 Aligned_cols=98 Identities=22% Similarity=0.169 Sum_probs=27.5
Q ss_pred EEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCC----------------------------------------
Q 010827 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPT---------------------------------------- 285 (500)
Q Consensus 246 ~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~---------------------------------------- 285 (500)
.|+|||||..|+-+|..+++.|.+ |.|+++...+...
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~---VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~ 77 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAK---VLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQED 77 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS----EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST----------
T ss_pred CEEEECccHHHHHHHHHHHHCCCE---EEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhccccccc
Confidence 489999999999999999999887 9999987654310
Q ss_pred ---------CC-cchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCC
Q 010827 286 ---------GT-PGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGL 355 (500)
Q Consensus 286 ---------~~-~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~ 355 (500)
+. ......+.+.+.+.||+++.++.+.++..+++.. .+|+++. . .
T Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i--------------------~~V~~~~----~-~ 132 (428)
T PF12831_consen 78 RYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRI--------------------TGVIVET----K-S 132 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccc--------------------ccccccc----c-c
Confidence 00 0111123455677899999999999888765322 4555552 1 1
Q ss_pred CccEEeecEEEEecCC
Q 010827 356 ESQIFEADLVLWTVGS 371 (500)
Q Consensus 356 ~~~~l~~D~vi~a~G~ 371 (500)
+..++.++.+|-|||.
T Consensus 133 g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 133 GRKEIRAKVFIDATGD 148 (428)
T ss_dssp ----------------
T ss_pred cccccccccccccccc
Confidence 3678899999999994
No 419
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.70 E-value=0.0025 Score=68.05 Aligned_cols=39 Identities=23% Similarity=0.301 Sum_probs=33.8
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCccc
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF 122 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~ 122 (500)
...+||||||+| +|++||..+++ .|.+|+|+||.+.+..
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~------~G~~v~v~Ek~~~~GG 52 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHE------LGLSVLIVEKSSYVGG 52 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHH------CCCcEEEEecCCCCcC
Confidence 346899999999 89999999998 7999999999875443
No 420
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=96.70 E-value=0.0016 Score=70.49 Aligned_cols=35 Identities=20% Similarity=0.169 Sum_probs=32.1
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCC
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (500)
..||||||+|.|||+||..+++ .|.+|+|+||...
T Consensus 29 ~~DVlVIG~G~AGl~AAi~Aa~------~G~~V~lveK~~~ 63 (617)
T PTZ00139 29 TYDAVVVGAGGAGLRAALGLVE------LGYKTACISKLFP 63 (617)
T ss_pred ccCEEEECccHHHHHHHHHHHH------cCCcEEEEeccCC
Confidence 4799999999999999999998 6899999999863
No 421
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.70 E-value=0.0016 Score=70.27 Aligned_cols=34 Identities=18% Similarity=0.271 Sum_probs=31.4
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (500)
..||||||||.|||+||..+++ .|.+|+|+||..
T Consensus 12 ~~DVvVIG~G~AGl~AAl~Aa~------~G~~V~lveK~~ 45 (598)
T PRK09078 12 KYDVVVVGAGGAGLRATLGMAE------AGLKTACITKVF 45 (598)
T ss_pred ccCEEEECccHHHHHHHHHHHH------cCCcEEEEEccC
Confidence 4799999999999999999998 688999999975
No 422
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=96.70 E-value=0.012 Score=61.25 Aligned_cols=35 Identities=26% Similarity=0.248 Sum_probs=27.3
Q ss_pred EEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCC
Q 010827 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVET 280 (500)
Q Consensus 246 ~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~ 280 (500)
+|+|||||..|.-+|..|++.+...-.|++|+...
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~ 35 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPD 35 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCC
Confidence 59999999999999999999996544499998754
No 423
>PRK12839 hypothetical protein; Provisional
Probab=96.69 E-value=0.0024 Score=68.43 Aligned_cols=38 Identities=24% Similarity=0.438 Sum_probs=33.6
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCc
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF 120 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~ 120 (500)
....||+|||+|.+|++||..+++ .|.+|+|+|+....
T Consensus 6 ~~~~dv~ViG~G~aG~~aa~~~~~------~g~~v~~iek~~~~ 43 (572)
T PRK12839 6 THTYDVVVVGSGAGGLSAAVAAAY------GGAKVLVVEKASTC 43 (572)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHH------CCCcEEEEecCCCC
Confidence 345899999999999999999998 68999999998643
No 424
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=96.67 E-value=0.0024 Score=61.04 Aligned_cols=37 Identities=22% Similarity=0.263 Sum_probs=33.1
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcc
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV 121 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~ 121 (500)
++|++|||+|.+|+-+|..|++ .|.+|.|+|+.++++
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~------~gk~VLIvekR~HIG 37 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQ------LGKRVLIVEKRNHIG 37 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHH------cCCEEEEEeccccCC
Confidence 3789999999999999998888 588999999999843
No 425
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=96.67 E-value=0.0066 Score=59.45 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=32.1
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (500)
....||+|||||.+|-+.|+.|++ .|-+|.+|||.=
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~k------dGRrVhVIERDl 78 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAK------DGRRVHVIERDL 78 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhh------CCcEEEEEeccc
Confidence 345789999999999999999999 688999999963
No 426
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.01 Score=53.77 Aligned_cols=101 Identities=14% Similarity=0.075 Sum_probs=69.8
Q ss_pred ccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecC--------C--------ccCCCC-----CcchHHHHHHHHHhCC
Q 010827 244 LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVE--------T--------TICPTG-----TPGNREAALKVLSARK 302 (500)
Q Consensus 244 ~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~--------~--------~~~~~~-----~~~~~~~~~~~l~~~g 302 (500)
..+|+|||+|+.+.-.|.++++.--+ -.+++.. . .-+|.| .+++.+.+++.-++.|
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelk---PllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~G 84 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELK---PLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFG 84 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccC---ceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhc
Confidence 35899999999999999998875433 2333210 0 012333 3677888888888999
Q ss_pred cEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccEEeecEEEEecCCCCCCCCC
Q 010827 303 VQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHV 378 (500)
Q Consensus 303 V~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~p~~~~~ 378 (500)
.++++. .|..++.+. .-+.+. ++.+.+.+|.||++||.....-.+
T Consensus 85 t~i~tE-tVskv~~ss-----------------------kpF~l~-------td~~~v~~~avI~atGAsAkRl~~ 129 (322)
T KOG0404|consen 85 TEIITE-TVSKVDLSS-----------------------KPFKLW-------TDARPVTADAVILATGASAKRLHL 129 (322)
T ss_pred ceeeee-ehhhccccC-----------------------CCeEEE-------ecCCceeeeeEEEecccceeeeec
Confidence 999876 566666544 455554 267888999999999987653333
No 427
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=96.66 E-value=0.0017 Score=70.24 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=31.6
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (500)
..||||||+|.|||.||..+++ .|.+|+|+||..
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae------~G~~VilveK~~ 83 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSE------HGFNTACITKLF 83 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHh------cCCcEEEEEcCC
Confidence 4799999999999999999998 689999999986
No 428
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.66 E-value=0.013 Score=60.29 Aligned_cols=140 Identities=14% Similarity=0.066 Sum_probs=86.6
Q ss_pred ccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCC-------------------------------CCC-----
Q 010827 244 LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICP-------------------------------TGT----- 287 (500)
Q Consensus 244 ~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~-------------------------------~~~----- 287 (500)
.++|+|||+|++|+-.|..|.+.+.+ +++++|.+.+.. +++
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~---v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~ 82 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHE---VVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERD 82 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCC---ceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccC
Confidence 57999999999999999999998877 888888665431 010
Q ss_pred -------cchHHHHHHHHHhCCc--EEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCC-c
Q 010827 288 -------PGNREAALKVLSARKV--QLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLE-S 357 (500)
Q Consensus 288 -------~~~~~~~~~~l~~~gV--~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~-~ 357 (500)
.+..+++....++.++ .|..++.+.+++...++. -.|.... ... .
T Consensus 83 ~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gk--------------------W~V~~~~-----~~~~~ 137 (448)
T KOG1399|consen 83 PRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGK--------------------WRVTTKD-----NGTQI 137 (448)
T ss_pred cccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCc--------------------eeEEEec-----CCcce
Confidence 1344555666666665 577777777777643100 2343331 112 2
Q ss_pred cEEeecEEEEecCCC--CCCCCCCCCCCccCCCCCC-CCCceEeCCCcccC---CCCCEEEeccccc
Q 010827 358 QIFEADLVLWTVGSK--PLLPHVEPPNNRLHDLPLN-ARGQAETDETLCVK---GHPRIFALGDSSA 418 (500)
Q Consensus 358 ~~l~~D~vi~a~G~~--p~~~~~~~~~~~~~~~~~~-~~g~i~vd~~~~t~---~~~~vyaiGD~~~ 418 (500)
++.-+|.|++|+|.- |+.+.... ..++ =.|.+..-..++.. ..+.|-+||--.+
T Consensus 138 ~~~ifd~VvVctGh~~~P~~P~~~g-------~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~S 197 (448)
T KOG1399|consen 138 EEEIFDAVVVCTGHYVEPRIPQIPG-------PGIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNS 197 (448)
T ss_pred eEEEeeEEEEcccCcCCCCCCcCCC-------CchhhcCCcceehhhccCcccccCceEEEECCCcc
Confidence 566799999999987 44443322 1122 24555555444431 2467888886555
No 429
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=96.66 E-value=0.0018 Score=69.58 Aligned_cols=45 Identities=16% Similarity=0.066 Sum_probs=34.3
Q ss_pred CCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHCC
Q 010827 400 ETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAIND 451 (500)
Q Consensus 400 ~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 451 (500)
...+| +.|++||+|||+... ..++...+..+|.+++.++...+..
T Consensus 400 ~~~~T-~i~gLyA~Ge~~~~~------~h~l~~nsl~eg~~ag~~a~~~~~~ 444 (614)
T TIGR02061 400 YNRMT-TVEGLFTCGDGVGAS------PHKFSSGSFTEGRIAAKAAVRWILD 444 (614)
T ss_pred cCCcc-ccCCEEeceecccCc------chhhHHhHHHHHHHHHHHHHHHHHh
Confidence 55567 899999999997631 1246778888899999998877643
No 430
>PRK11445 putative oxidoreductase; Provisional
Probab=96.64 E-value=0.022 Score=57.29 Aligned_cols=32 Identities=31% Similarity=0.468 Sum_probs=28.0
Q ss_pred EEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCc
Q 010827 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVETT 281 (500)
Q Consensus 246 ~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~ 281 (500)
+|+|||+|+.|.-+|..|++. .+ |+++++.+.
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~~---V~liE~~~~ 34 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-MK---VIAIDKKHQ 34 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-CC---EEEEECCCc
Confidence 799999999999999999876 54 999998763
No 431
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.63 E-value=0.0019 Score=69.48 Aligned_cols=34 Identities=18% Similarity=0.307 Sum_probs=31.5
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (500)
..||||||+|.|||+||..+++ .|.+|+|+||..
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~------~G~~V~lleK~~ 40 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQ------SGQSCALLSKVF 40 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHH------cCCcEEEEEccC
Confidence 4799999999999999999988 689999999985
No 432
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=96.59 E-value=0.019 Score=58.97 Aligned_cols=33 Identities=27% Similarity=0.440 Sum_probs=29.3
Q ss_pred cEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCC
Q 010827 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVET 280 (500)
Q Consensus 245 k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~ 280 (500)
++|+|||+|.+|+-+|..|++.+.+ |+++++..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~---V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQ---VTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCe---EEEEeCCC
Confidence 3899999999999999999998765 99999865
No 433
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.57 E-value=0.0025 Score=68.20 Aligned_cols=35 Identities=23% Similarity=0.486 Sum_probs=32.2
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCC
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (500)
..||||||+|.+|++||..+++ .|.+|+|||+.+.
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~------~G~~v~liEk~~~ 40 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAAD------SGLEPLIVEKQDK 40 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHH------CCCcEEEEecCCC
Confidence 5799999999999999999999 6899999999864
No 434
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=96.56 E-value=0.015 Score=55.86 Aligned_cols=35 Identities=29% Similarity=0.529 Sum_probs=32.1
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (500)
...+|+|||+|.|||-||..|+. +|.+|+|+|++.
T Consensus 4 ~~~dvivvgaglaglvaa~elA~------aG~~V~ildQEg 38 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELAD------AGKRVLILDQEG 38 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHh------cCceEEEEcccc
Confidence 34799999999999999999998 799999999976
No 435
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=96.53 E-value=0.016 Score=58.87 Aligned_cols=98 Identities=22% Similarity=0.232 Sum_probs=62.4
Q ss_pred EEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCcc--CCCC-----C-------------------------------
Q 010827 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTI--CPTG-----T------------------------------- 287 (500)
Q Consensus 246 ~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~--~~~~-----~------------------------------- 287 (500)
.|+|||+|++|.-+|..|++.... ..|.++++.... .... .
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g-~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~ 79 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPG-LSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDY 79 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCC-CEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEccc
Confidence 389999999999999999333222 129999876544 1100 0
Q ss_pred -------cchHHHHHHHHHhCCcEEEcCceEEEEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccEE
Q 010827 288 -------PGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIF 360 (500)
Q Consensus 288 -------~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l 360 (500)
..+.+.+.+.+.+.++ +..+..|++|+..+ +.+.+.+. ++.++
T Consensus 80 ~Y~~i~~~~f~~~l~~~~~~~~~-~~~~~~V~~i~~~~-----------------------~~~~v~~~------~g~~i 129 (374)
T PF05834_consen 80 PYCMIDRADFYEFLLERAAAGGV-IRLNARVTSIEETG-----------------------DGVLVVLA------DGRTI 129 (374)
T ss_pred ceEEEEHHHHHHHHHHHhhhCCe-EEEccEEEEEEecC-----------------------ceEEEEEC------CCCEE
Confidence 1122333445553444 55667888888765 33344432 67799
Q ss_pred eecEEEEecCCCCC
Q 010827 361 EADLVLWTVGSKPL 374 (500)
Q Consensus 361 ~~D~vi~a~G~~p~ 374 (500)
.++.||-|.|..+.
T Consensus 130 ~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 130 RARVVVDARGPSSP 143 (374)
T ss_pred EeeEEEECCCcccc
Confidence 99999999996544
No 436
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=96.52 E-value=0.0024 Score=69.52 Aligned_cols=59 Identities=14% Similarity=0.035 Sum_probs=42.0
Q ss_pred CCceEeCCCcccCCCCCEEEecccccc-cCCCCCCCCchHHHHHHHHHHHHHHHHHHHCC
Q 010827 393 RGQAETDETLCVKGHPRIFALGDSSAL-RDSSGRPLPATAQVAFQQADFAGWNLWAAIND 451 (500)
Q Consensus 393 ~g~i~vd~~~~t~~~~~vyaiGD~~~~-~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 451 (500)
-|.|.||...+|...|++||+|+|+.. .....+.-......++..|+.+++++...+..
T Consensus 372 mGGi~vd~~~~t~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~iAg~~aa~~~~~ 431 (657)
T PRK08626 372 MGGIRTNPTGESYGLKGLFSAGEAACWDMHGFNRLGGNSLAETVVAGMIVGKYVADFCLG 431 (657)
T ss_pred cCCceECCCCCCcccCCEEecccccccCCCCCCccchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 467999999998459999999999752 11111111345678889999999998877643
No 437
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=96.49 E-value=0.0063 Score=57.99 Aligned_cols=38 Identities=24% Similarity=0.455 Sum_probs=33.3
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (500)
...+|+||||||..|++.|+.|.- .+++.+|.|+|++.
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~l----rhp~l~V~vleke~ 83 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSL----RHPSLKVAVLEKEK 83 (453)
T ss_pred cccccEEEECCceeehhhhHHHhh----cCCCceEEeeehhh
Confidence 456999999999999999999866 34799999999986
No 438
>PLN02815 L-aspartate oxidase
Probab=96.49 E-value=0.0034 Score=67.36 Aligned_cols=56 Identities=14% Similarity=-0.006 Sum_probs=40.9
Q ss_pred CCceEeCCCcccCCCCCEEEeccccc-ccCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 010827 393 RGQAETDETLCVKGHPRIFALGDSSA-LRDSSGRPLPATAQVAFQQADFAGWNLWAAI 449 (500)
Q Consensus 393 ~g~i~vd~~~~t~~~~~vyaiGD~~~-~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l 449 (500)
-|.|.+|...|| +.|++||+|+|+. ......+........++-.|+.+++.+...+
T Consensus 377 ~GGi~vD~~~~t-~IpGLyAaGE~a~~G~hGanrl~gnsl~e~lvfGr~Ag~~aa~~~ 433 (594)
T PLN02815 377 CGGVRTGLQGET-NVQGLYAAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHM 433 (594)
T ss_pred CCCeeECCCCce-ecCCEEecccccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHh
Confidence 577999999998 8999999999974 2211111123456788888999999987654
No 439
>PLN02976 amine oxidase
Probab=96.47 E-value=0.0033 Score=71.84 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=35.2
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCccc
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVF 122 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~ 122 (500)
...++|+|||||++|+++|..|.+ .|++|+|||+++.++.
T Consensus 691 ~~~~dV~IIGAG~AGLaAA~~L~~------~G~~V~VlEa~~~vGG 730 (1713)
T PLN02976 691 VDRKKIIVVGAGPAGLTAARHLQR------QGFSVTVLEARSRIGG 730 (1713)
T ss_pred CCCCcEEEECchHHHHHHHHHHHH------CCCcEEEEeeccCCCC
Confidence 345899999999999999999998 6899999999887543
No 440
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.46 E-value=0.0088 Score=55.05 Aligned_cols=35 Identities=20% Similarity=0.230 Sum_probs=31.3
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (500)
..++|+|||||..|...+..|.+ .|.+|+|++++.
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~------~ga~VtVvsp~~ 42 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLK------AGAQLRVIAEEL 42 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHH------CCCEEEEEcCCC
Confidence 35799999999999999999998 689999998863
No 441
>PRK07395 L-aspartate oxidase; Provisional
Probab=96.45 E-value=0.0029 Score=67.45 Aligned_cols=54 Identities=15% Similarity=0.088 Sum_probs=37.0
Q ss_pred CCceEeCCCcccCCCCCEEEeccccc-ccCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 010827 393 RGQAETDETLCVKGHPRIFALGDSSA-LRDSSGRPLPATAQVAFQQADFAGWNLWA 447 (500)
Q Consensus 393 ~g~i~vd~~~~t~~~~~vyaiGD~~~-~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 447 (500)
-|.|.||...|| +.|++||+|.|+. ......+.-......++--|+.++..+..
T Consensus 347 ~GGi~vd~~~~t-~I~GLyAaGE~a~~G~hGanRL~gnsl~e~lvfG~~a~~~~~~ 401 (553)
T PRK07395 347 MGGVVTDLNNQT-SIPGLYAVGETASTGVHGANRLASNSLLECLVFAAQLAQLELP 401 (553)
T ss_pred CCCeeECCCCcc-cCCCEEECccccccCCCcccchHHHHHHHHHHHHHHHHHHHHh
Confidence 477899999998 8999999999974 21111111123455677778888888754
No 442
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.43 E-value=0.015 Score=63.69 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=29.9
Q ss_pred cEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCC
Q 010827 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVET 280 (500)
Q Consensus 245 k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~ 280 (500)
.+|+|||+|.+|+-+|..|++++.+ |+|+++..
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~---V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQ---VTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCe---EEEEecCC
Confidence 3899999999999999999998876 99999864
No 443
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.42 E-value=0.0062 Score=63.49 Aligned_cols=35 Identities=31% Similarity=0.508 Sum_probs=32.0
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (500)
..++|+|+|+|..|+++|..|++ .|++|+++|++.
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~------~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKK------LGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH------CCCEEEEEeCCc
Confidence 35899999999999999999999 799999999975
No 444
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=96.42 E-value=0.034 Score=57.79 Aligned_cols=33 Identities=33% Similarity=0.355 Sum_probs=29.2
Q ss_pred cEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCC
Q 010827 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVET 280 (500)
Q Consensus 245 k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~ 280 (500)
-+|+|||||+.|.-+|..|++.+.+ |.++++..
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~~G~~---VlllEr~~ 72 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAKGGIE---TFLIERKL 72 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCc---EEEEecCC
Confidence 3899999999999999999988876 99998764
No 445
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=96.42 E-value=0.0034 Score=66.19 Aligned_cols=36 Identities=19% Similarity=0.045 Sum_probs=32.9
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcc
Q 010827 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV 121 (500)
Q Consensus 80 ~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~ 121 (500)
+||+|||+||+|+.+|..|++ .|++|++||++....
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~------~g~~v~~~e~~~~~~ 36 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVD------AGLKVAMVEIGAADS 36 (544)
T ss_pred CcEEEECCchHHHHHHHHHHH------CCCeEEEEeccCccC
Confidence 589999999999999999998 689999999987654
No 446
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.41 E-value=0.0073 Score=60.85 Aligned_cols=73 Identities=16% Similarity=0.112 Sum_probs=57.0
Q ss_pred CccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCCC-------Ccc------hHHHHHHHHHhCCcEEEcCc
Q 010827 243 SLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTG-------TPG------NREAALKVLSARKVQLVLGY 309 (500)
Q Consensus 243 ~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~~-------~~~------~~~~~~~~l~~~gV~i~~~~ 309 (500)
..++++|||||.+|++.|.+|++.|-+ |.+++..+.+...+ +.. +...+.+.-..-+|++++.+
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~~---v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~Tya 199 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGFK---VYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYA 199 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCCe---EEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeee
Confidence 368999999999999999999999988 99999988765432 211 23334444556789999999
Q ss_pred eEEEEecCc
Q 010827 310 FVRCIRRVG 318 (500)
Q Consensus 310 ~v~~i~~~~ 318 (500)
+|+++.+.-
T Consensus 200 eV~ev~G~v 208 (622)
T COG1148 200 EVEEVSGSV 208 (622)
T ss_pred eeeeecccc
Confidence 999998753
No 447
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=96.40 E-value=0.029 Score=56.82 Aligned_cols=32 Identities=22% Similarity=0.210 Sum_probs=28.8
Q ss_pred EEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCC
Q 010827 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVET 280 (500)
Q Consensus 246 ~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~ 280 (500)
+|+|||+|.+|+-+|..|++.+.+ |+++++..
T Consensus 5 dv~IIGgGi~G~s~A~~L~~~g~~---V~lie~~~ 36 (376)
T PRK11259 5 DVIVIGLGSMGSAAGYYLARRGLR---VLGLDRFM 36 (376)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCe---EEEEeccc
Confidence 799999999999999999998765 99999754
No 448
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=96.38 E-value=0.0027 Score=68.49 Aligned_cols=56 Identities=18% Similarity=0.083 Sum_probs=40.7
Q ss_pred CCceEeCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 010827 393 RGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAI 449 (500)
Q Consensus 393 ~g~i~vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l 449 (500)
.|.|.+|...+| +.|++||+|+|+......-+.-......+.-.|+.+++++...+
T Consensus 370 ~gG~~~d~~~~t-~i~gL~a~Ge~~~~~hg~nrl~~~sl~~~~v~g~~Ag~~aa~~~ 425 (603)
T TIGR01811 370 MGGLWVDYDQMT-NIPGLFAAGECDFSQHGANRLGANSLLSAIADGYFALPFTIPNY 425 (603)
T ss_pred CCCeeECCCCcc-cCCCEEECcccccCcCCCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 477999999998 89999999999753211111112456678889999999987764
No 449
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=96.37 E-value=0.026 Score=58.55 Aligned_cols=31 Identities=29% Similarity=0.416 Sum_probs=26.8
Q ss_pred EEEEECCChhHHHHHHHHHH----HHhhcCeEEEEecC
Q 010827 246 RVAVVGCGYSGVELAATVSE----RLEEKGIVQAINVE 279 (500)
Q Consensus 246 ~V~VvGgG~~g~e~A~~l~~----~~~~~~~vtlv~~~ 279 (500)
.|+|||||++|+-+|..|++ .+.+ |+++++.
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~---v~viE~~ 36 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDLK---VLLLDAV 36 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCCe---EEEEeCC
Confidence 69999999999999999987 4554 9999983
No 450
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=96.35 E-value=0.03 Score=59.79 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=29.2
Q ss_pred cEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCC
Q 010827 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVET 280 (500)
Q Consensus 245 k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~ 280 (500)
-.|+|||||.+|+-+|..|++++.+ |+++++.+
T Consensus 7 ~DVvIIGGGi~G~~iA~~La~rG~~---V~LlEk~d 39 (546)
T PRK11101 7 TDVIIIGGGATGAGIARDCALRGLR---CILVERHD 39 (546)
T ss_pred ccEEEECcCHHHHHHHHHHHHcCCe---EEEEECCC
Confidence 3799999999999999999998876 99998744
No 451
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.34 E-value=0.0047 Score=64.23 Aligned_cols=37 Identities=22% Similarity=0.353 Sum_probs=34.6
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCc
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF 120 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~ 120 (500)
...||+|||||..|+.+|+.++. +|++|+|+|+.+.-
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~------RGl~v~LvE~~D~A 47 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAG------RGLKVALVEKGDLA 47 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHh------CCCeEEEEecCccc
Confidence 67999999999999999999998 89999999999863
No 452
>PRK02106 choline dehydrogenase; Validated
Probab=96.31 E-value=0.0047 Score=66.24 Aligned_cols=37 Identities=27% Similarity=0.296 Sum_probs=33.1
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCC
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (500)
..+|+||||+|+||+.+|..|++. +|++|+|+|+++.
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~-----~g~~VlvlEaG~~ 40 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSED-----PDVSVLLLEAGGP 40 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhC-----CCCeEEEecCCCc
Confidence 348999999999999999999983 6999999999964
No 453
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=96.30 E-value=0.037 Score=56.52 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=30.8
Q ss_pred cEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCc
Q 010827 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETT 281 (500)
Q Consensus 245 k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~ 281 (500)
.+|+|||+|+.|+-+|..|++.+.+ |+++++.+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~---v~viE~~~~ 36 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGID---NVILERQSR 36 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCC---EEEEECCCC
Confidence 4899999999999999999998877 999998774
No 454
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=96.29 E-value=0.0048 Score=71.61 Aligned_cols=39 Identities=26% Similarity=0.504 Sum_probs=34.4
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcc
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFV 121 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~ 121 (500)
+...||||||+|.|||+||..+++ .|.+|+|+||.+...
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae------~Ga~VivlEK~~~~G 445 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAAS------CGAQVILLEKEAKLG 445 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHH------CCCcEEEEEccCCCC
Confidence 446899999999999999999998 689999999987543
No 455
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=96.26 E-value=0.032 Score=59.01 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=28.7
Q ss_pred EEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCc
Q 010827 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVETT 281 (500)
Q Consensus 246 ~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~ 281 (500)
.|+|||+|..|+-+|..+++.+.+ |.++++...
T Consensus 63 DVvVVG~G~AGl~AAi~Aa~~Ga~---VivlEK~~~ 95 (506)
T PRK06481 63 DIVIVGAGGAGMSAAIEAKDAGMN---PVILEKMPV 95 (506)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCC---EEEEECCCC
Confidence 799999999999999999988876 888887543
No 456
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=96.25 E-value=0.03 Score=59.46 Aligned_cols=31 Identities=23% Similarity=0.320 Sum_probs=27.6
Q ss_pred EEEEECCChhHHHHHHHHHHHHhhcCeEEEEecC
Q 010827 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVE 279 (500)
Q Consensus 246 ~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~ 279 (500)
.|+|||+|..|+++|..+++.+.+ |.++++.
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~---v~Lie~~ 32 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAK---TLLLTLN 32 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCC---EEEEecc
Confidence 689999999999999999988776 8888864
No 457
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.23 E-value=0.0057 Score=61.08 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=30.1
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCC
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (500)
...++|+|||||.++.+++..|.+.+ +..+|+++-|+..
T Consensus 188 ~~~~~V~VVGgGQSAAEi~~~L~~~~----~~~~V~~i~R~~~ 226 (341)
T PF13434_consen 188 LAGKRVAVVGGGQSAAEIFLDLLRRG----PEAKVTWISRSPG 226 (341)
T ss_dssp ---EEEEEE-SSHHHHHHHHHHHHH-----TTEEEEEEESSSS
T ss_pred cCCCeEEEECCcHhHHHHHHHHHhCC----CCcEEEEEECCCc
Confidence 45689999999999999999999842 3469999999874
No 458
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.16 E-value=0.018 Score=60.18 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=30.4
Q ss_pred eEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCC
Q 010827 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (500)
Q Consensus 81 ~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (500)
+|+|||.|++|+++|..|++ .|++|+++|+++.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~------~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKA------QGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHH------CCCEEEEECCCCc
Confidence 69999999999999999998 7999999998864
No 459
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=96.06 E-value=0.0022 Score=57.41 Aligned_cols=36 Identities=22% Similarity=0.367 Sum_probs=32.1
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCC
Q 010827 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (500)
Q Consensus 80 ~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (500)
.||||||+|.+||+||+.+.+. .+.++|.|||.+-.
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~----rPdlkvaIIE~SVa 112 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKN----RPDLKVAIIESSVA 112 (328)
T ss_pred cceEEECCCccccceeeeeecc----CCCceEEEEEeeec
Confidence 5899999999999999999873 48999999999754
No 460
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=95.96 E-value=0.064 Score=58.35 Aligned_cols=33 Identities=30% Similarity=0.457 Sum_probs=28.0
Q ss_pred EEEEECCChhHHHHHHHHHHH-HhhcCeEEEEecCCc
Q 010827 246 RVAVVGCGYSGVELAATVSER-LEEKGIVQAINVETT 281 (500)
Q Consensus 246 ~V~VvGgG~~g~e~A~~l~~~-~~~~~~vtlv~~~~~ 281 (500)
+|+|||+|++|+-+|..|+++ +-+ |+++++.+.
T Consensus 34 dVlIVGAGPaGL~lA~~Lar~~Gi~---v~IiE~~~~ 67 (634)
T PRK08294 34 DVLIVGCGPAGLTLAAQLSAFPDIT---TRIVERKPG 67 (634)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCCc---EEEEEcCCC
Confidence 899999999999999999985 655 888876543
No 461
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.84 E-value=0.078 Score=54.03 Aligned_cols=39 Identities=23% Similarity=0.504 Sum_probs=31.9
Q ss_pred cEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccC
Q 010827 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTIC 283 (500)
Q Consensus 245 k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~ 283 (500)
++|+|||+|.+|+.+|..|.+.-.....|+++++...+.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G 40 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFG 40 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccC
Confidence 489999999999999999987665555588988766554
No 462
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=95.79 E-value=0.023 Score=53.85 Aligned_cols=41 Identities=32% Similarity=0.387 Sum_probs=31.0
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhccc-CCCCCCeEEEEcCCC
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVW-QDDKKPQVLLVDQSE 118 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~-~~~~g~~V~lie~~~ 118 (500)
+..+|+|||+|..||+.|..+.++.- ...+-.+|++++...
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf 43 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRF 43 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCC
Confidence 35799999999999999988777431 012568899997764
No 463
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=95.68 E-value=0.07 Score=56.50 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=29.3
Q ss_pred cEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCC
Q 010827 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVET 280 (500)
Q Consensus 245 k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~ 280 (500)
-.|+|||||.+|+-+|..++.++.+ |.++++.+
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rGl~---V~LvEk~d 39 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAGRGLS---VLLCEQDD 39 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCe---EEEEecCC
Confidence 4799999999999999999998877 88888753
No 464
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=95.64 E-value=0.098 Score=54.69 Aligned_cols=31 Identities=23% Similarity=0.487 Sum_probs=26.4
Q ss_pred EEEEECCChhHHHHHHHHHHH--HhhcCeEEEEecC
Q 010827 246 RVAVVGCGYSGVELAATVSER--LEEKGIVQAINVE 279 (500)
Q Consensus 246 ~V~VvGgG~~g~e~A~~l~~~--~~~~~~vtlv~~~ 279 (500)
.|+|||+|.+|+-+|..|++. +.+ |+|+++.
T Consensus 26 DVvIIGgGi~Gls~A~~La~~~~G~~---V~vlE~~ 58 (460)
T TIGR03329 26 DVCIVGGGFTGLWTAIMIKQQRPALD---VLVLEAD 58 (460)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCe---EEEEeCC
Confidence 799999999999999999887 445 8888864
No 465
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=95.59 E-value=0.012 Score=62.78 Aligned_cols=33 Identities=30% Similarity=0.429 Sum_probs=30.0
Q ss_pred eEEEECCcHHHHHHHHHhhhcccCCCCC-CeEEEEcCCCC
Q 010827 81 RICILGGGFGGLYTALRLESLVWQDDKK-PQVLLVDQSER 119 (500)
Q Consensus 81 ~VvIIGgG~AGl~aA~~L~~~~~~~~~g-~~V~lie~~~~ 119 (500)
|+||||||.||+.+|.+|++ .+ ++|+|+|+.+.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~------~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSE------DVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhcc------CCCCeEEEEecCCC
Confidence 68999999999999999998 45 79999999864
No 466
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=95.53 E-value=0.12 Score=54.07 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=28.6
Q ss_pred EEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCC
Q 010827 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVET 280 (500)
Q Consensus 246 ~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~ 280 (500)
.|+|||+|..|+-+|..+++.+.+ |.++++..
T Consensus 6 DVvVVG~G~aGl~AA~~aa~~G~~---V~vlEk~~ 37 (466)
T PRK08274 6 DVLVIGGGNAALCAALAAREAGAS---VLLLEAAP 37 (466)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCe---EEEEeCCC
Confidence 799999999999999999998876 88888754
No 467
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=95.43 E-value=0.087 Score=54.26 Aligned_cols=32 Identities=25% Similarity=0.356 Sum_probs=26.1
Q ss_pred EEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCc
Q 010827 247 VAVVGCGYSGVELAATVSERLEEKGIVQAINVETT 281 (500)
Q Consensus 247 V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~ 281 (500)
|+|||+|..|+-+|..+++.+.+ |.+++....
T Consensus 2 VvVIG~G~AGl~AA~~Aae~G~~---V~lvek~~~ 33 (417)
T PF00890_consen 2 VVVIGGGLAGLAAAIEAAEAGAK---VLLVEKGPR 33 (417)
T ss_dssp EEEE-SSHHHHHHHHHHHHTTT----EEEEESSSG
T ss_pred EEEECCCHHHHHHHHHHhhhcCe---EEEEEeecc
Confidence 89999999999999999998886 888887554
No 468
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=95.43 E-value=0.11 Score=56.26 Aligned_cols=34 Identities=24% Similarity=0.293 Sum_probs=31.0
Q ss_pred ccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCC
Q 010827 244 LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVET 280 (500)
Q Consensus 244 ~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~ 280 (500)
..+|+|||||..|+-+|..|++.+.+ |+++++..
T Consensus 81 ~~~VlIVGgGIaGLalAlaL~r~Gi~---V~V~Er~~ 114 (668)
T PLN02927 81 KSRVLVAGGGIGGLVFALAAKKKGFD---VLVFEKDL 114 (668)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCe---EEEEeccc
Confidence 46999999999999999999998876 99999865
No 469
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.43 E-value=0.13 Score=54.46 Aligned_cols=32 Identities=22% Similarity=0.294 Sum_probs=28.7
Q ss_pred EEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCC
Q 010827 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVET 280 (500)
Q Consensus 246 ~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~ 280 (500)
.|+|||||.+|+-+|..|+.++.+ |.++++.+
T Consensus 8 DVvIIGGGi~G~~~A~~la~rG~~---V~LlEk~d 39 (502)
T PRK13369 8 DLFVIGGGINGAGIARDAAGRGLK---VLLCEKDD 39 (502)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCc---EEEEECCC
Confidence 799999999999999999998876 88888764
No 470
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=95.42 E-value=0.018 Score=61.25 Aligned_cols=37 Identities=27% Similarity=0.337 Sum_probs=33.5
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCC
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (500)
...+|+||||+|.+|..+|..|+. +|++|+|+|+...
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~------~g~~VllLEaG~~ 41 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSD------AGLSVLVLEAGGP 41 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcC------CCCeEEEEeCCCC
Confidence 456999999999999999999986 8999999999863
No 471
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=95.40 E-value=0.11 Score=52.37 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=28.2
Q ss_pred EEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCC
Q 010827 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVET 280 (500)
Q Consensus 246 ~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~ 280 (500)
+|+|||+|.+|+-+|..|++.+.+ |+++++..
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~G~~---V~vle~~~ 33 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRGLS---VTVIERSS 33 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCe---EEEEeCCC
Confidence 699999999999999999988765 99998754
No 472
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.042 Score=53.27 Aligned_cols=103 Identities=18% Similarity=0.157 Sum_probs=72.3
Q ss_pred ccEEEEECCChhHHHHHHHHHHHHhhcCeEE------E-----EecCCccCCCCCcchHHHHHHHHHhCCcEEEcCceEE
Q 010827 244 LIRVAVVGCGYSGVELAATVSERLEEKGIVQ------A-----INVETTICPTGTPGNREAALKVLSARKVQLVLGYFVR 312 (500)
Q Consensus 244 ~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vt------l-----v~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~ 312 (500)
+-.|+|||||+.|...|.+.++.+-+.+.+. + ++.--.+.....+.+...+.+.+++..|.++...+.+
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra~ 290 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRAS 290 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhhhh
Confidence 5699999999999999999988776533100 0 0000111223457888888999999999999888877
Q ss_pred EEecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccEEeecEEEEecCCC
Q 010827 313 CIRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSK 372 (500)
Q Consensus 313 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~ 372 (500)
.+++.+... +-+.+++. ++-.+.+..+|++||.+
T Consensus 291 ~l~~a~~~~--------------------~l~ev~l~------nGavLkaktvIlstGAr 324 (520)
T COG3634 291 KLEPAAVEG--------------------GLIEVELA------NGAVLKARTVILATGAR 324 (520)
T ss_pred cceecCCCC--------------------ccEEEEec------CCceeccceEEEecCcc
Confidence 777632100 34555553 88999999999999976
No 473
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=95.35 E-value=0.13 Score=53.53 Aligned_cols=32 Identities=25% Similarity=0.394 Sum_probs=26.1
Q ss_pred EEEEECCChhHHHHHHHHHHHH-hhcCeEEEEecCC
Q 010827 246 RVAVVGCGYSGVELAATVSERL-EEKGIVQAINVET 280 (500)
Q Consensus 246 ~V~VvGgG~~g~e~A~~l~~~~-~~~~~vtlv~~~~ 280 (500)
.|+|||+|..|+-+|..+++.+ .+ |.++++..
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~---V~vlEk~~ 33 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAAN---VVLLEKMP 33 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCcc---EEEEecCC
Confidence 3899999999999999998887 65 88877643
No 474
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=95.32 E-value=0.024 Score=58.29 Aligned_cols=31 Identities=26% Similarity=0.339 Sum_probs=26.4
Q ss_pred cEEEEECCChhHHHHHHHHHHHHhhcCeEEEEec
Q 010827 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINV 278 (500)
Q Consensus 245 k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~ 278 (500)
-.|+|||||..|+|.|...++.+.+ +.+++.
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~k---tlLlT~ 35 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAK---TLLLTL 35 (621)
T ss_pred CceEEECCCccchHHHHhhhccCCe---EEEEEc
Confidence 3899999999999999999999887 555543
No 475
>PLN02985 squalene monooxygenase
Probab=95.31 E-value=0.15 Score=53.95 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=30.2
Q ss_pred ccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCC
Q 010827 244 LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVET 280 (500)
Q Consensus 244 ~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~ 280 (500)
..+|+|||+|..|+-+|..|++.+.+ |+++++..
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~~---V~vlEr~~ 76 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGRR---VHVIERDL 76 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCe---EEEEECcC
Confidence 45899999999999999999988776 99999864
No 476
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.27 E-value=0.026 Score=49.61 Aligned_cols=32 Identities=28% Similarity=0.361 Sum_probs=30.0
Q ss_pred eEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC
Q 010827 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (500)
Q Consensus 81 ~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (500)
+|+|||||..|.++|..|++ .|++|+|+.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~------~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLAD------NGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHH------CTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHH------cCCEEEEEeccH
Confidence 68999999999999999999 789999999975
No 477
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=95.27 E-value=0.053 Score=56.93 Aligned_cols=36 Identities=25% Similarity=0.416 Sum_probs=28.2
Q ss_pred CCCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCe-EEEEcCC
Q 010827 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQ-VLLVDQS 117 (500)
Q Consensus 76 ~~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~-V~lie~~ 117 (500)
-....+|||||||-+|.++|++|++ +|.+ ..+.|+.
T Consensus 36 ~~~~A~vvViggG~~g~~~~yhlak------~g~k~avlle~~ 72 (856)
T KOG2844|consen 36 LPSTADVVVIGGGSLGCSTAYHLAK------RGMKGAVLLERS 72 (856)
T ss_pred CCCcccEEEEcCCchhHHHHHHHHH------ccccceEEEeee
Confidence 3455899999999999999999999 5667 4444444
No 478
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=95.08 E-value=0.075 Score=49.96 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=31.4
Q ss_pred EEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccC
Q 010827 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTIC 283 (500)
Q Consensus 246 ~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~ 283 (500)
+|+|||+|..|+-+|..|.+.+.+ ||+++++..+.
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~---vtV~eKg~GvG 37 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGRE---VTVFEKGRGVG 37 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcE---EEEEEcCCCcc
Confidence 699999999999999999998888 99999876554
No 479
>PRK07121 hypothetical protein; Validated
Probab=95.05 E-value=0.17 Score=53.42 Aligned_cols=32 Identities=25% Similarity=0.274 Sum_probs=28.0
Q ss_pred EEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCC
Q 010827 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVET 280 (500)
Q Consensus 246 ~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~ 280 (500)
.|+|||+|..|+-+|..+++.+.+ |.+++...
T Consensus 22 DVvVVGaG~AGl~AA~~aae~G~~---VillEK~~ 53 (492)
T PRK07121 22 DVVVVGFGAAGACAAIEAAAAGAR---VLVLERAA 53 (492)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCe---EEEEeCCC
Confidence 799999999999999999988776 88888644
No 480
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.03 E-value=0.053 Score=49.87 Aligned_cols=33 Identities=24% Similarity=0.169 Sum_probs=29.7
Q ss_pred ccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecC
Q 010827 244 LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVE 279 (500)
Q Consensus 244 ~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~ 279 (500)
+|+|+|||||.+|..-+..|.+.+.+ |+++.+.
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~---VtVvsp~ 41 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQ---LRVIAEE 41 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCE---EEEEcCC
Confidence 68999999999999999999998887 9999763
No 481
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.00 E-value=0.045 Score=53.12 Aligned_cols=104 Identities=22% Similarity=0.311 Sum_probs=68.3
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCcccCcchhhhccccccCccccccHHHHhccCCcEEEE
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERFVFKPMLYELLSGEVDAWEIAPRFADLLANTGVQFFK 156 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~ 156 (500)
..+++++|||||+.+++.|-.++.+ |.++.|+=|.+.+ +.+. + +.+.....+.++..+++++.
T Consensus 187 e~Pkr~vvvGaGYIavE~Agi~~gL------gsethlfiR~~kv---------LR~F-D-~~i~~~v~~~~~~~ginvh~ 249 (478)
T KOG0405|consen 187 EQPKRVVVVGAGYIAVEFAGIFAGL------GSETHLFIRQEKV---------LRGF-D-EMISDLVTEHLEGRGINVHK 249 (478)
T ss_pred hcCceEEEEccceEEEEhhhHHhhc------CCeeEEEEecchh---------hcch-h-HHHHHHHHHHhhhcceeecc
Confidence 4578999999999999999999884 7788888777652 1111 0 12233445667777888887
Q ss_pred e-eEEEEecCCCCCCCCCceeecCcEEEcCCccEEEecEEEEeCCCCCCCCC
Q 010827 157 D-RVKLLCPSDHLGVNGPMACTHGGTVLLESGLIVEYDWLVLSLGAEPKLDV 207 (500)
Q Consensus 157 ~-~v~~i~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~d~lIlAtG~~p~~~~ 207 (500)
. .++.+.....- ...+....+.....|.|+.|+|..|....
T Consensus 250 ~s~~~~v~K~~~g----------~~~~i~~~~~i~~vd~llwAiGR~Pntk~ 291 (478)
T KOG0405|consen 250 NSSVTKVIKTDDG----------LELVITSHGTIEDVDTLLWAIGRKPNTKG 291 (478)
T ss_pred cccceeeeecCCC----------ceEEEEeccccccccEEEEEecCCCCccc
Confidence 4 55555433221 01233334445569999999999886543
No 482
>PLN02785 Protein HOTHEAD
Probab=94.99 E-value=0.032 Score=59.88 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=31.8
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCC
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (500)
...+|++|||||.||+.+|..|.+ +++|+|+|+++.
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-------~~~VLllE~G~~ 88 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-------NFSVLLLERGGV 88 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-------CCcEEEEecCCC
Confidence 345999999999999999999987 379999999864
No 483
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.95 E-value=0.034 Score=45.03 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=30.1
Q ss_pred CCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCC
Q 010827 78 KKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQS 117 (500)
Q Consensus 78 ~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~ 117 (500)
+.++|+|||||..|..-+..|.+ .|.+|+++.+.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~------~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLE------AGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCC------CTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHh------CCCEEEEECCc
Confidence 45899999999999999999988 68999999887
No 484
>PRK08401 L-aspartate oxidase; Provisional
Probab=94.87 E-value=0.19 Score=52.69 Aligned_cols=33 Identities=24% Similarity=0.436 Sum_probs=28.5
Q ss_pred cEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCC
Q 010827 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVET 280 (500)
Q Consensus 245 k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~ 280 (500)
+.|+|||+|..|+-+|..+++.+.+ |.+++...
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~---V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFD---VTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCe---EEEEeCCC
Confidence 4899999999999999999987766 88888753
No 485
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=94.84 E-value=0.081 Score=58.94 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=29.5
Q ss_pred EEEEECCChhHHHHHHHHHHH--HhhcCeEEEEecCCcc
Q 010827 246 RVAVVGCGYSGVELAATVSER--LEEKGIVQAINVETTI 282 (500)
Q Consensus 246 ~V~VvGgG~~g~e~A~~l~~~--~~~~~~vtlv~~~~~~ 282 (500)
+|+|||+|+.|+-+|..|++. +.+ |+++++.+..
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~---V~vlEr~~~~ 37 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHE---VTVVERNRPY 37 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCe---EEEEecCCCC
Confidence 799999999999999999887 445 9999987653
No 486
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.61 E-value=0.077 Score=55.32 Aligned_cols=55 Identities=31% Similarity=0.347 Sum_probs=41.2
Q ss_pred ccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCCCCcchHHHHHHHHHhCCcEEEcC
Q 010827 244 LIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLG 308 (500)
Q Consensus 244 ~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~ 308 (500)
+|+|+|+|+|..|+.+|..|++.|.+ |+++++... ... +...+.|.+.|+++..+
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~---V~~~d~~~~------~~~-~~~~~~l~~~~~~~~~~ 59 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAK---VILTDEKEE------DQL-KEALEELGELGIELVLG 59 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCch------HHH-HHHHHHHHhcCCEEEeC
Confidence 68999999999999999999999887 999987542 112 33334566778776654
No 487
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=94.60 E-value=0.038 Score=52.93 Aligned_cols=102 Identities=17% Similarity=0.145 Sum_probs=61.3
Q ss_pred cEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCC--CCCcchHHHHHHHHHhC---CcEEEcC------ceEEE
Q 010827 245 IRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICP--TGTPGNREAALKVLSAR---KVQLVLG------YFVRC 313 (500)
Q Consensus 245 k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~--~~~~~~~~~~~~~l~~~---gV~i~~~------~~v~~ 313 (500)
-+|+|||||.-|+.+|..+.+..... .|.++++.+.... .+. -....+ ..|.+. -..+++. ..|++
T Consensus 40 ~kvLVvGGGsgGi~~A~k~~rkl~~g-~vgIvep~e~HyYQPgfT-LvGgGl-~~l~~srr~~a~liP~~a~wi~ekv~~ 116 (446)
T KOG3851|consen 40 FKVLVVGGGSGGIGMAAKFYRKLGSG-SVGIVEPAEDHYYQPGFT-LVGGGL-KSLDSSRRKQASLIPKGATWIKEKVKE 116 (446)
T ss_pred eEEEEEcCCcchhHHHHHHHhhcCCC-ceEEecchhhcccCcceE-Eeccch-hhhhhccCcccccccCCcHHHHHHHHh
Confidence 48999999999999999998877654 3888887653321 111 000000 111111 1111111 23444
Q ss_pred EecCccccccccCCCCCcccccccccCCcceeEeecccccCCCccEEeecEEEEecCCCCCCCCCCC
Q 010827 314 IRRVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPLLPHVEP 380 (500)
Q Consensus 314 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~p~~~~~~~ 380 (500)
+.++. +.|..+ ++++|.+|.+|+|+|..-+.+-++.
T Consensus 117 f~P~~-----------------------N~v~t~--------gg~eIsYdylviA~Giql~y~~IkG 152 (446)
T KOG3851|consen 117 FNPDK-----------------------NTVVTR--------GGEEISYDYLVIAMGIQLDYGKIKG 152 (446)
T ss_pred cCCCc-----------------------CeEEcc--------CCcEEeeeeEeeeeeceeccchhcC
Confidence 44433 455554 8899999999999999877655543
No 488
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=94.55 E-value=0.066 Score=49.98 Aligned_cols=93 Identities=16% Similarity=0.066 Sum_probs=58.6
Q ss_pred EEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCCCCcchHHHHHHHHHhCCcEEEcCce-----------EEEEe
Q 010827 247 VAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYF-----------VRCIR 315 (500)
Q Consensus 247 V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~-----------v~~i~ 315 (500)
.+|||||..|+.+|..|+.+.+... +.+++.++.+-. -...+.+-+.+++..|+=-..++ |..++
T Consensus 2 fivvgggiagvscaeqla~~~psa~-illitass~vks---vtn~~~i~~ylekfdv~eq~~~elg~~f~~~~~~v~~~~ 77 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAE-ILLITASSFVKS---VTNYQKIGQYLEKFDVKEQNCHELGPDFRRFLNDVVTWD 77 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCc-EEEEeccHHHHH---HhhHHHHHHHHHhcCccccchhhhcccHHHHHHhhhhhc
Confidence 5899999999999999999877654 777776543311 12233444556665554211111 22222
Q ss_pred cCccccccccCCCCCcccccccccCCcceeEeecccccCCCccEEeecEEEEecCCCCC
Q 010827 316 RVGEFEASVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVGSKPL 374 (500)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G~~p~ 374 (500)
.+. .-+..+ ++..+.++.+.+|+|++|-
T Consensus 78 s~e-----------------------hci~t~--------~g~~~ky~kKOG~tg~kPk 105 (334)
T KOG2755|consen 78 SSE-----------------------HCIHTQ--------NGEKLKYFKLCLCTGYKPK 105 (334)
T ss_pred ccc-----------------------ceEEec--------CCceeeEEEEEEecCCCcc
Confidence 211 233333 7899999999999999996
No 489
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.48 E-value=0.068 Score=46.93 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=30.6
Q ss_pred CCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCC
Q 010827 77 KKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQS 117 (500)
Q Consensus 77 ~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~ 117 (500)
...++|+|||||..|..-|..|.+ .|++|+||++.
T Consensus 11 l~~~~vlVvGGG~va~rka~~Ll~------~ga~V~VIsp~ 45 (157)
T PRK06719 11 LHNKVVVIIGGGKIAYRKASGLKD------TGAFVTVVSPE 45 (157)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHh------CCCEEEEEcCc
Confidence 346899999999999999999988 69999999654
No 490
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.45 E-value=0.096 Score=48.10 Aligned_cols=71 Identities=24% Similarity=0.184 Sum_probs=0.0
Q ss_pred CccEEEEECCChhHHHHHHHHHHHHhhcCeEEEEecCCccCCCCCcchHHHHHHHHHhCCcEEEcCceEEEEecCccccc
Q 010827 243 SLIRVAVVGCGYSGVELAATVSERLEEKGIVQAINVETTICPTGTPGNREAALKVLSARKVQLVLGYFVRCIRRVGEFEA 322 (500)
Q Consensus 243 ~~k~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~ 322 (500)
.+|+|+|||||..|...+..|.+.+.+ |+++.+ ...+.+.+...+..+.+ ....-.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~---V~VIs~----------~~~~~l~~l~~~~~i~~-----~~~~~~------ 64 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAH---IVVISP----------ELTENLVKLVEEGKIRW-----KQKEFE------ 64 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCe---EEEEcC----------CCCHHHHHHHhCCCEEE-----EecCCC------
Q ss_pred cccCCCCCcccccccccCCcceeEeecccccCCCccEEeecEEEEecC
Q 010827 323 SVKQPESGAIPNIAADKNSDKYILELQPAIKGLESQIFEADLVLWTVG 370 (500)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~l~~D~vi~a~G 370 (500)
....-.+|+||.||+
T Consensus 65 ---------------------------------~~~l~~adlViaaT~ 79 (202)
T PRK06718 65 ---------------------------------PSDIVDAFLVIAATN 79 (202)
T ss_pred ---------------------------------hhhcCCceEEEEcCC
No 491
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.39 E-value=0.049 Score=50.95 Aligned_cols=34 Identities=32% Similarity=0.466 Sum_probs=31.3
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCC
Q 010827 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (500)
Q Consensus 80 ~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (500)
++++|||+|..|.+.|..|.+ .|++|++||+++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~------~g~~Vv~Id~d~~ 34 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSE------EGHNVVLIDRDEE 34 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHh------CCCceEEEEcCHH
Confidence 479999999999999999999 7999999999854
No 492
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=94.28 E-value=0.061 Score=39.83 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=27.5
Q ss_pred EECCChhHHHHHHHHHHHHhhcCeEEEEecCCccC
Q 010827 249 VVGCGYSGVELAATVSERLEEKGIVQAINVETTIC 283 (500)
Q Consensus 249 VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~~~~~ 283 (500)
|||+|.+|+-+|..|++.+.+ |+++++.+.+.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~---v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYR---VTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSE---EEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCc---EEEEecCcccC
Confidence 899999999999999988665 99999988764
No 493
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.27 E-value=0.34 Score=52.79 Aligned_cols=30 Identities=37% Similarity=0.406 Sum_probs=26.7
Q ss_pred EEEEECCChhHHHHHHHHHHHHhhcCeEEEEec
Q 010827 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINV 278 (500)
Q Consensus 246 ~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~ 278 (500)
.|+|||+|..|+-+|..+++.+.+ |.+++.
T Consensus 37 DVlVVG~G~AGl~AAi~Aae~G~~---VilieK 66 (640)
T PRK07573 37 DVIVVGTGLAGASAAATLGELGYN---VKVFCY 66 (640)
T ss_pred CEEEECccHHHHHHHHHHHHcCCc---EEEEec
Confidence 799999999999999999887766 888874
No 494
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=94.22 E-value=0.044 Score=52.77 Aligned_cols=47 Identities=21% Similarity=0.189 Sum_probs=38.5
Q ss_pred eCCCcccCCCCCEEEecccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHCCCC
Q 010827 398 TDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRP 453 (500)
Q Consensus 398 vd~~~~t~~~~~vyaiGD~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~ 453 (500)
.|.++|.++.|++|++|-..+. .-...+...|-.++.|.++...+++
T Consensus 325 L~~tl~lk~~p~l~fAGQitG~---------EGYveSaA~Gllag~naa~~~~g~~ 371 (439)
T COG1206 325 LDPTLQLKKRPNLFFAGQITGV---------EGYVESAASGLLAGINAARLALGEE 371 (439)
T ss_pred hhHHhhcccCCCcEEeeeeecc---------hhhhHHhhhhHHHhhHHHHHhcCCC
Confidence 4577888889999999999885 4555677899999999998888764
No 495
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=94.19 E-value=0.059 Score=48.51 Aligned_cols=33 Identities=24% Similarity=0.317 Sum_probs=28.5
Q ss_pred eEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCC
Q 010827 81 RICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (500)
Q Consensus 81 ~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (500)
+|.|||+|..|...|..++. .|++|+++|.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~------~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFAR------AGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHH------TTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHh------CCCcEEEEECChH
Confidence 58999999999999999999 6999999999864
No 496
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=94.18 E-value=0.14 Score=51.85 Aligned_cols=30 Identities=27% Similarity=0.314 Sum_probs=25.9
Q ss_pred EEEEECCChhHHHHHHHHHHHHhhcCeEEEEec
Q 010827 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINV 278 (500)
Q Consensus 246 ~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~ 278 (500)
.|+|||||..|+|.|...++.|.+ .++++.
T Consensus 30 dVvVIGgGHAG~EAAaAaaR~Ga~---TlLlT~ 59 (679)
T KOG2311|consen 30 DVVVIGGGHAGCEAAAAAARLGAR---TLLLTH 59 (679)
T ss_pred cEEEECCCccchHHHHHHHhcCCc---eEEeec
Confidence 899999999999999999999887 555543
No 497
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=93.95 E-value=0.065 Score=48.44 Aligned_cols=34 Identities=38% Similarity=0.476 Sum_probs=27.2
Q ss_pred CeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCC
Q 010827 80 PRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSER 119 (500)
Q Consensus 80 ~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~ 119 (500)
++|.|||.|+.||..|..|++ .||+|+.+|.++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~------~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAE------KGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHH------TTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHh------CCCEEEEEeCChH
Confidence 479999999999999999999 7999999999864
No 498
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.94 E-value=0.16 Score=53.16 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=31.0
Q ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCC
Q 010827 79 KPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSE 118 (500)
Q Consensus 79 ~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~ 118 (500)
.++|+|+|.|.+|+++|..|++ .|++|++.|.++
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~------~G~~V~~~D~~~ 47 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVK------LGAKVTAFDKKS 47 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHH------CCCEEEEECCCC
Confidence 4789999999999999999988 789999999875
No 499
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=93.92 E-value=0.41 Score=50.45 Aligned_cols=30 Identities=23% Similarity=0.390 Sum_probs=24.9
Q ss_pred EEEEECCChhHHHHHHHHHHHHhhcCeEEEEecC
Q 010827 246 RVAVVGCGYSGVELAATVSERLEEKGIVQAINVE 279 (500)
Q Consensus 246 ~V~VvGgG~~g~e~A~~l~~~~~~~~~vtlv~~~ 279 (500)
.|+|||+|..|+-+|..+++.+ .|.+++..
T Consensus 4 DVlVVG~G~AGl~AA~~aa~~G----~V~lleK~ 33 (488)
T TIGR00551 4 DVVVIGSGAAGLSAALALADQG----RVIVLSKA 33 (488)
T ss_pred cEEEECccHHHHHHHHHHHhCC----CEEEEEcc
Confidence 7999999999999999998754 27777765
No 500
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=93.91 E-value=0.066 Score=56.41 Aligned_cols=40 Identities=25% Similarity=0.261 Sum_probs=35.5
Q ss_pred CCCCCeEEEECCcHHHHHHHHHhhhcccCCCCCCeEEEEcCCCCc
Q 010827 76 DKKKPRICILGGGFGGLYTALRLESLVWQDDKKPQVLLVDQSERF 120 (500)
Q Consensus 76 ~~~~~~VvIIGgG~AGl~aA~~L~~~~~~~~~g~~V~lie~~~~~ 120 (500)
....+|.+|||||.||...|.+|.+. +..+|.|+|++...
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn-----~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSEN-----PNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccC-----CCceEEEEecCCCC
Confidence 35579999999999999999999984 78999999998764
Done!