BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010828
         (499 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WIN|A Chain A, Solution Structure Of The Band 7 Domain Of The Mouse
           Flotillin 2 Protein
          Length = 143

 Score = 33.9 bits (76), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 3/81 (3%)

Query: 89  QNSIHVREIVKGIIEGETRVLAASMTMEEVFKGTKEFKQEVFEKVQLELNQFGLLIYNAN 148
           +N   ++ +V   +EG  R +  ++T+E++++   +F + V E    ++ + G+ I +  
Sbjct: 59  KNVQDIKNVVLQTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFT 118

Query: 149 IKQLVDVPGHEYFSYLGQKTQ 169
           IK + D    +Y S LG KTQ
Sbjct: 119 IKDVYDKV--DYLSSLG-KTQ 136


>pdb|2XC1|A Chain A, Full-Length Tailspike Protein Mutant Y108w Of
           Bacteriophage P22
 pdb|2XC1|B Chain B, Full-Length Tailspike Protein Mutant Y108w Of
           Bacteriophage P22
 pdb|2XC1|C Chain C, Full-Length Tailspike Protein Mutant Y108w Of
           Bacteriophage P22
          Length = 666

 Score = 32.0 bits (71), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 5/83 (6%)

Query: 135 LELNQFGLLIYNANIKQLVDVPGHEYFSYLGQKTQME-AANQAKVD----VAEARMKGEV 189
           L +N  G ++YN  + ++V V GH    Y    +Q++  AN  K D      EA  K + 
Sbjct: 64  LIINAAGKIVYNGQLVKIVTVQGHSMAIYDANGSQVDYIANVLKWDPDQYSIEADKKFKY 123

Query: 190 GAKLREGQTLQNAAKIDAETKII 212
             KL +  TLQ+AA    +  +I
Sbjct: 124 SVKLSDYPTLQDAASAAVDGLLI 146


>pdb|3O0P|A Chain A, Pilus-Related Sortase C Of Group B Streptococcus
          Length = 216

 Score = 29.3 bits (64), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 115 MEEVFKGTKEFKQEVFEKVQLELNQFGLLIYNANIKQLVDVPGHEYFSYLGQKTQMEAAN 174
           ++++ KG K + Q + E +  +++Q  ++  + N   L+ VPGH+Y + L     M   +
Sbjct: 131 LKKLKKGDKFYIQNIKETIAYQVDQIKVVTPD-NFSDLLVVPGHDYATLLTCTPIMVNTH 189

Query: 175 QAKVDVAEARMKGEVGAKL 193
           +  V       KG +  KL
Sbjct: 190 RLLVRGHRIPYKGPIDEKL 208


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.130    0.361 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,187,079
Number of Sequences: 62578
Number of extensions: 439647
Number of successful extensions: 1139
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1135
Number of HSP's gapped (non-prelim): 12
length of query: 499
length of database: 14,973,337
effective HSP length: 103
effective length of query: 396
effective length of database: 8,527,803
effective search space: 3377009988
effective search space used: 3377009988
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 53 (25.0 bits)