Query 010828
Match_columns 499
No_of_seqs 252 out of 1750
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 05:01:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010828.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010828hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2668 Flotillins [Intracellu 100.0 4.6E-62 1E-66 478.5 22.7 411 1-474 1-426 (428)
2 COG2268 Uncharacterized protei 100.0 2.1E-48 4.6E-53 409.6 21.4 468 1-479 34-537 (548)
3 cd03407 Band_7_4 A subgroup of 99.9 3.9E-27 8.4E-32 234.9 4.3 178 7-196 1-181 (262)
4 cd03405 Band_7_HflC Band_7_Hfl 99.9 5.4E-27 1.2E-31 230.9 3.9 185 2-196 1-190 (242)
5 cd03401 Band_7_prohibitin Band 99.9 4E-25 8.7E-30 210.7 9.2 184 1-194 1-191 (196)
6 TIGR01932 hflC HflC protein. H 99.9 7.9E-26 1.7E-30 231.1 4.4 185 1-194 19-243 (317)
7 cd03403 Band_7_stomatin_like B 99.9 8.3E-25 1.8E-29 211.5 7.2 177 5-195 1-181 (215)
8 TIGR01933 hflK HflK protein. H 99.9 3E-25 6.5E-30 221.1 4.0 181 2-197 1-188 (261)
9 PRK11029 FtsH protease regulat 99.9 4.1E-25 8.8E-30 226.0 5.0 187 1-196 19-255 (334)
10 cd03404 Band_7_HflK Band_7_Hfl 99.9 8.7E-25 1.9E-29 218.3 4.9 184 1-198 14-216 (266)
11 KOG2620 Prohibitins and stomat 99.9 1.8E-25 3.8E-30 213.8 -3.4 182 3-196 10-195 (301)
12 cd03406 Band_7_3 A subgroup of 99.9 2.5E-23 5.5E-28 208.0 11.7 182 2-193 5-201 (280)
13 PRK10930 FtsH protease regulat 99.9 3.3E-23 7.2E-28 217.4 4.6 185 2-200 97-287 (419)
14 cd03402 Band_7_2 A subgroup of 99.8 1.1E-21 2.4E-26 190.4 7.0 167 2-183 2-179 (219)
15 PF01145 Band_7: SPFH domain / 99.8 1.1E-21 2.4E-26 182.9 4.7 172 3-184 1-178 (179)
16 smart00244 PHB prohibitin homo 99.8 4.9E-21 1.1E-25 175.5 6.3 153 1-166 2-158 (160)
17 COG0330 HflC Membrane protease 99.8 5E-21 1.1E-25 193.6 6.9 179 2-194 21-209 (291)
18 KOG2621 Prohibitins and stomat 99.8 2.9E-20 6.3E-25 180.3 3.8 173 1-187 54-231 (288)
19 cd03399 Band_7_flotillin Band_ 99.8 7.2E-20 1.6E-24 163.1 5.1 124 38-167 2-127 (128)
20 cd03408 Band_7_5 A subgroup of 99.5 5.2E-15 1.1E-19 142.1 4.7 157 2-165 16-204 (207)
21 KOG2668 Flotillins [Intracellu 99.4 8.4E-13 1.8E-17 131.4 13.0 140 235-387 222-363 (428)
22 cd03400 Band_7_1 A subgroup of 99.4 3.3E-13 7.1E-18 119.5 3.5 118 38-165 3-121 (124)
23 cd02106 Band_7 The band 7 doma 99.1 7.5E-11 1.6E-15 102.0 2.8 104 51-166 16-119 (121)
24 KOG3090 Prohibitin-like protei 98.9 3E-09 6.4E-14 100.7 8.3 186 1-196 38-229 (290)
25 KOG3083 Prohibitin [Posttransl 98.7 1.7E-08 3.7E-13 95.6 5.6 177 9-196 35-218 (271)
26 KOG2962 Prohibitin-related mem 98.0 7.3E-05 1.6E-09 71.6 11.2 148 3-157 24-178 (322)
27 PF13421 Band_7_1: SPFH domain 97.6 8.8E-05 1.9E-09 71.9 6.3 154 4-164 18-203 (211)
28 PTZ00491 major vault protein; 97.5 0.01 2.2E-07 67.2 20.7 153 3-164 465-649 (850)
29 COG2268 Uncharacterized protei 97.2 0.0017 3.7E-08 70.3 9.4 46 238-283 267-312 (548)
30 COG4260 Membrane protease subu 96.9 0.0011 2.3E-08 65.7 4.8 126 26-157 86-225 (345)
31 cd03404 Band_7_HflK Band_7_Hfl 95.8 0.032 6.9E-07 55.8 7.9 52 353-406 214-265 (266)
32 TIGR01932 hflC HflC protein. H 94.9 0.093 2E-06 54.1 8.3 38 362-399 254-291 (317)
33 cd03405 Band_7_HflC Band_7_Hfl 94.6 0.12 2.5E-06 50.8 7.7 35 359-393 196-230 (242)
34 TIGR01933 hflK HflK protein. H 94.4 0.21 4.6E-06 49.7 9.2 53 364-426 198-250 (261)
35 PRK11029 FtsH protease regulat 93.0 0.4 8.7E-06 49.8 8.4 31 363-393 265-295 (334)
36 PF12127 YdfA_immunity: SigmaW 91.6 0.49 1.1E-05 47.2 6.7 136 27-184 96-246 (316)
37 cd03407 Band_7_4 A subgroup of 88.7 3.3 7.2E-05 41.3 10.1 26 362-387 190-215 (262)
38 PRK13665 hypothetical protein; 86.9 1.6 3.4E-05 43.5 6.2 115 26-157 100-229 (316)
39 PRK10930 FtsH protease regulat 86.9 3.3 7.2E-05 44.4 9.3 41 375-426 305-345 (419)
40 PTZ00121 MAEBL; Provisional 80.9 3.4 7.5E-05 49.6 6.6 15 3-17 908-922 (2084)
41 PTZ00491 major vault protein; 70.9 39 0.00084 39.2 11.4 8 448-455 805-812 (850)
42 PTZ00121 MAEBL; Provisional 69.7 28 0.0006 42.5 10.0 11 160-170 1093-1103(2084)
43 PF11978 MVP_shoulder: Shoulde 69.3 7.4 0.00016 34.1 4.2 99 51-155 11-117 (118)
44 KOG2620 Prohibitins and stomat 66.7 30 0.00064 34.7 8.2 25 362-386 215-239 (301)
45 cd03406 Band_7_3 A subgroup of 55.1 24 0.00052 35.8 5.6 7 342-348 240-246 (280)
46 PRK13665 hypothetical protein; 54.8 21 0.00045 35.8 4.8 23 371-393 276-299 (316)
47 PF12127 YdfA_immunity: SigmaW 49.3 23 0.00051 35.6 4.3 17 371-387 271-287 (316)
48 COG0330 HflC Membrane protease 44.4 1.6E+02 0.0035 29.5 9.8 19 370-388 227-245 (291)
49 PRK13454 F0F1 ATP synthase sub 34.3 2.7E+02 0.0058 26.2 8.9 11 404-414 152-162 (181)
50 KOG2962 Prohibitin-related mem 32.0 1.9E+02 0.0041 28.6 7.3 9 55-63 72-80 (322)
51 COG2811 NtpF Archaeal/vacuolar 31.2 3.4E+02 0.0075 23.6 8.1 21 361-381 68-88 (108)
52 PRK01558 V-type ATP synthase s 30.5 1.4E+02 0.0031 28.4 6.5 6 419-424 119-124 (198)
53 COG4864 Uncharacterized protei 23.9 1.8E+02 0.0039 28.5 5.6 134 38-192 124-258 (328)
54 COG1871 CheD Chemotaxis protei 23.7 52 0.0011 30.6 1.9 31 2-32 17-56 (164)
55 CHL00118 atpG ATP synthase CF0 21.4 6.2E+02 0.013 22.9 8.8 11 403-413 142-152 (156)
56 PF06713 bPH_4: Bacterial PH d 20.3 1.5E+02 0.0032 23.6 3.7 64 3-79 3-68 (74)
No 1
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=100.00 E-value=4.6e-62 Score=478.46 Aligned_cols=411 Identities=40% Similarity=0.557 Sum_probs=323.2
Q ss_pred CccccCccceeEeeeccccccccccccceecCceeeEeeeccccceeEee-eccccccccccceeeecCCCCCChhhHHH
Q 010828 1 MFRVASASQYLAITGTGINDVKLAKKSWVFPGQYCTVFDITPVNYDFEVQ-AMSAEKLEFKLPAVFTIGPREDDRDSLLK 79 (499)
Q Consensus 1 ~y~~~~p~ealVVtg~g~~rv~~gG~~fviPfq~v~~isl~~~~i~i~~~-~~T~D~v~V~V~av~~v~v~~~d~~~i~~ 79 (499)
+|++|+||++++|||+|..+++.-.+.|+||||+|.+||++++++++.++ ++|++++|++|+++|+++|..+|++.++.
T Consensus 1 ~f~~~~~~~~l~itg~g~~~~~lv~~~wvf~wq~~q~~~ln~mtl~~~~e~v~tsegvP~~vtgVaqvki~~~~~~elL~ 80 (428)
T KOG2668|consen 1 MFKVAGASQYLAITGGGIEDIKLVKKSWVFPWQQCTVFDVSPMTLTFKVENVMTSEGVPFVVTGVAQVKIRVDDADELLL 80 (428)
T ss_pred CCccCCccceEEeecccccCceecccceeeeeeeeeEEeecceeeeeecchhhcccCCceEeeeeEEEeeccCCHHHHHH
Confidence 69999999999999999977776667777777999999999999999888 99999999999999999998778665555
Q ss_pred Hh-hhcCCCCCCchhHHHHHhhhhcccceeecccccHHHHhhchHHHHHHHHHHhhhcccceeeEEEecccccccccCCc
Q 010828 80 YA-KLIAPKDQNSIHVREIVKGIIEGETRVLAASMTMEEVFKGTKEFKQEVFEKVQLELNQFGLLIYNANIKQLVDVPGH 158 (499)
Q Consensus 80 aa-~~~~~~~~~~~~i~~~~~~~leg~lR~iig~mtleei~~~R~~f~~~V~~~~~~dl~~~Gl~I~sv~I~dI~d~~g~ 158 (499)
++ ..|+| ++..+|..++..+|+||+|.++|+||+||||.||++|...|++.+..||..|||.|.|++|+|+.|..|.
T Consensus 81 ~A~e~flg--K~~~eIn~~vl~tlEGh~Rai~asmTvEEIyKdrk~F~k~Vfeva~~dl~~mGi~I~s~tiKdl~D~~g~ 158 (428)
T KOG2668|consen 81 YACEQFLG--KSSNEINELVLGTLEGHTRAILASMTVEEIYKDRKEFKKEVFEVAQLDLGQMGIVIYSATIKDLVDVPGH 158 (428)
T ss_pred HHHHHhcC--CCHHHHHHHHHHHhhhHHHHHHHhccHHHHHhhHHHHHHHHHHHhhhhhhhcceEEEEeEhhhhhcccch
Confidence 54 57764 7789999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred chhcccchhhHHHHhhhhchhHHHhhhcccccchhccccchhhhcccccccceEEEeecCCCccceeeEeeeeeeecchh
Q 010828 159 EYFSYLGQKTQMEAANQAKVDVAEARMKGEVGAKLREGQTLQNAAKIDAETKIIKVQRQGDGQKEEMRVKTEVKVFENQR 238 (499)
Q Consensus 159 ~y~~alg~~~~A~~~~~A~i~~Aea~r~~~i~~aea~~~~~~~~A~~~~e~~Ia~a~~~~~~~~ae~~~~~~~~~a~~~~ 238 (499)
.||.+||+...+++.|+|+|.+||+++++=|. |+.+.+....|++.+|++|+
T Consensus 159 ~YlssLGka~taev~rdArIgvAEAk~eaGik--Ea~~~~~~~aak~~aetkI~-------------------------- 210 (428)
T KOG2668|consen 159 EYLSSLGKATTAEVARDARIGVAEAKREAGIK--EATGLTEQNAAKIDAETKIA-------------------------- 210 (428)
T ss_pred HHHHHhhhHHHHHHHhhcccchHHhhhhcchh--hhhHHHHHhHHhhhhhhhHH--------------------------
Confidence 79999999999999999999999999866554 44455555555555555554
Q ss_pred HHHHHHHhHHHHHhhhhhhhhhhhhhhcccccchhhhHHHHHHH----------HHhh--hhhhHHHHHHHhhhccchhh
Q 010828 239 EAEVAEANAELAKKKAGWAREAKVAEVESTKAVALRDAELQREV----------EKMN--AATSMEKLRAEFVSKANVEY 306 (499)
Q Consensus 239 e~~~A~a~a~~~~~~a~~~~~~~~a~a~a~~a~~~~~~e~q~ev----------~~~~--~~~~~~~l~~e~~~~A~a~~ 306 (499)
.++++++++++.++.++.+.+++|+.+|+++.+..++.+ ++.+ ++++++.++.+.++.|.++
T Consensus 211 -----~~qR~~el~Ka~~dveV~~~~aEA~lAyelqaak~kq~i~~e~~qV~vVEr~kqvAv~eqEiqr~~~el~A~vR- 284 (428)
T KOG2668|consen 211 -----SAQRTKELIKAATDVEVNTNKAEADLAYELQAAKTKQAIREEEIQVAVVERTKQVAVREQEIQRRVEELNATVR- 284 (428)
T ss_pred -----HhhhhHHHHHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 444555555555555555555555555555444333222 1111 4455666667777777777
Q ss_pred hhhhhhhhHHHhhhhhHHHHHHhhhHHHHHHHHhhhhHHHHHHhhhhchhhhhhhhhhhhhhhhhhhhhhHHHHHHHhhC
Q 010828 307 EAQVQEANWELYKKQKEAEAILYQKEKEAEAQKATAEAAFYARKQAADGQLYTKLKEAEGLVALGKAQGEYLKSISTSLG 386 (499)
Q Consensus 307 ~~~~~~AeA~~~~~~~~AeA~~~~~~~eAea~k~~AeA~~~~~~~~Aea~~~~~~AEAe~i~a~g~AeAe~~~~~aeA~~ 386 (499)
.+|+|+.+..++-|||+......+| ++||+-++..|+|||.+|.+.+.|||+-+++.++++.
T Consensus 285 ----~paeAe~~r~~klaEAnk~~~~~qa--------------qAEA~~irk~geAEA~~ieA~akaeaeqm~~ka~v~~ 346 (428)
T KOG2668|consen 285 ----TPAEAEVERETKLAEANKELYNKQA--------------QAEAELIRKQGEAEAFAIEADAKAEAEQMAAKAEVYQ 346 (428)
T ss_pred ----ChhHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 6677777777777777755544433 2345556677888899999999999999999999998
Q ss_pred CchH-hhhHhhhcchhhHHHHHHhhHHHhhcCCCceeeeecCCCCCCCCCCCCcchhhHhhhHhhhcChhhHhhhhhcCC
Q 010828 387 GDYR-AVKDFLMIDRGVYQEMARINAEAVRGLQPKLSIWTNNESGGEAGGDASSSAMREVSGIYRALPPLFQTIYDQTGM 465 (499)
Q Consensus 387 ~~~~-a~~~~~~i~~~~lp~i~~~~a~p~~~i~~~i~i~~~~~~g~~~~~~g~~~~~~~v~~~~~~~~~~~~~~~~~tGi 465 (499)
.++. ++.. ++|+. ||.|+..++.||.+. ++|++|++ |+| .+ |++++|+.|.+|+..|||+++.|...+|.
T Consensus 347 ~y~~aa~l~-~lLea--lp~Ia~~ia~plakt-nkI~v~s~---g~~-~~-g~~k~t~dV~~l~~~LP~~v~~ltgv~~s 417 (428)
T KOG2668|consen 347 AYAQAAYLR-TLLEA--LPMIAAEIAAPLAKT-NKISVWSH---GGG-QM-GNAKVTGDVAGLYKMLPPSVDTLTGVDGS 417 (428)
T ss_pred HhhhhHHHH-HHHHH--HHHHHHHhccchhhc-CeEEEEec---CCc-cc-cchhhHHHHHHHHHhCcHHHhhhcccccc
Confidence 8654 5543 55664 999999999999998 99999987 422 22 56789999999999999998877666666
Q ss_pred CCCCccccc
Q 010828 466 TPPPFMGTL 474 (499)
Q Consensus 466 dl~~~l~~~ 474 (499)
.+|.|++.+
T Consensus 418 q~p~~~~~~ 426 (428)
T KOG2668|consen 418 QPPAWIGTL 426 (428)
T ss_pred cCccccccc
Confidence 666666544
No 2
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=2.1e-48 Score=409.62 Aligned_cols=468 Identities=20% Similarity=0.216 Sum_probs=298.7
Q ss_pred CccccCccceeEeee---------ccccccccccccceecC-ceeeEeeeccccceeEee-eccccccccccceeeecCC
Q 010828 1 MFRVASASQYLAITG---------TGINDVKLAKKSWVFPG-QYCTVFDITPVNYDFEVQ-AMSAEKLEFKLPAVFTIGP 69 (499)
Q Consensus 1 ~y~~~~p~ealVVtg---------~g~~rv~~gG~~fviPf-q~v~~isl~~~~i~i~~~-~~T~D~v~V~V~av~~v~v 69 (499)
||++|||++++|++| .++.+|+.|||||++|+ |.+.++||+.+.+++.+. ++|+|++|+++.++|++++
T Consensus 34 ~y~~a~~~~aLI~~g~~~g~~~~~g~~~~vV~gGg~~v~Pi~q~~~r~~l~~i~l~v~~~~v~t~Dg~p~~v~~~a~v~i 113 (548)
T COG2268 34 FYIIARPNEALIRTGSKLGSKDEAGGGQKVVRGGGAIVMPIFQTIERMSLTTIKLEVEIDNVYTKDGMPLNVEAVAYVKI 113 (548)
T ss_pred eEEecCCCceEEEeccccCCcccccCCccEEecCceEEecceeeeEEeeeeeeeeeeeeeeeEecCCCccceeEEEEEEe
Confidence 699999999999999 44479999999999997 999999999997777744 8999999999999999999
Q ss_pred CCCChhhHHHHhhhcCCCCCCchhHHHHHhhhhcccceeecccccHHHHhhchHHHHHHHHHHhhhcccceeeEEEeccc
Q 010828 70 REDDRDSLLKYAKLIAPKDQNSIHVREIVKGIIEGETRVLAASMTMEEVFKGTKEFKQEVFEKVQLELNQFGLLIYNANI 149 (499)
Q Consensus 70 ~~~d~~~i~~aa~~~~~~~~~~~~i~~~~~~~leg~lR~iig~mtleei~~~R~~f~~~V~~~~~~dl~~~Gl~I~sv~I 149 (499)
. +|...+.+++.+|++.+ ++..+...+.++++|+||.++++||+++|+++|..|.+.|.+.+..||+++||.|+++.|
T Consensus 114 ~-~~~~dI~~aae~~g~Kg-~~~~l~~~~~~~l~~~lR~i~a~~t~~el~edR~~F~~~V~~~v~~dL~k~Gl~l~s~~I 191 (548)
T COG2268 114 G-DTFQDIATAAERFGGKG-SREDLEQLAEDTLEGALRAVLAQMTVEELNEDRLGFAQVVQEVVGDDLSKMGLVLDSLAI 191 (548)
T ss_pred c-CCHHHHHHHHHHhcccc-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHhhHHhhHHHHHHHHHHHHHHhcCeeeeeeee
Confidence 8 78999999999999754 667999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCC-----cchhcccchhhHHHHhhhhchhHHHhhhcccccchhccccchhhhcccccccceEEEee--cCCCcc
Q 010828 150 KQLVDVPG-----HEYFSYLGQKTQMEAANQAKVDVAEARMKGEVGAKLREGQTLQNAAKIDAETKIIKVQR--QGDGQK 222 (499)
Q Consensus 150 ~dI~d~~g-----~~y~~alg~~~~A~~~~~A~i~~Aea~r~~~i~~aea~~~~~~~~A~~~~e~~Ia~a~~--~~~~~~ 222 (499)
+++.|++. ++||+++|++.+++..+++.+.++|++++..|.++++..+.......+.+.-.-..+.+ +.++.-
T Consensus 192 ~~i~d~~~~~~d~~~yLda~G~r~i~qv~~~a~ia~~E~~~~t~i~i~~a~~~a~~~e~~v~~q~~~~~a~~~~~~ki~~ 271 (548)
T COG2268 192 NDINDTSKENQDPNNYLDALGRRRIAQVLQDAEIAENEAEKETEIAIAEANRDAKLVELEVEQQPAGKTAEQTREVKIIL 271 (548)
T ss_pred cccccccccccChhhhhhhcChHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhHHHHHhhhhhcccccchhhhhhhhhhhc
Confidence 99999911 24999999999999999999999999999988777654432211111111100000000 000111
Q ss_pred ceeeEeeeeeeecchhHHHHHHHhHHHHHhhhhhhhhhhhh--hhcccccchhhhHHHHHHHH--Hhh----hhhhHHHH
Q 010828 223 EEMRVKTEVKVFENQREAEVAEANAELAKKKAGWAREAKVA--EVESTKAVALRDAELQREVE--KMN----AATSMEKL 294 (499)
Q Consensus 223 ae~~~~~~~~~a~~~~e~~~A~a~a~~~~~~a~~~~~~~~a--~a~a~~a~~~~~~e~q~ev~--~~~----~~~~~~~l 294 (499)
++..+......++.+++.+.|++.++.++.....+.++++. .+..+...++...+.+++.+ .+. ....+...
T Consensus 272 a~~e~e~~~~~ae~~~~a~~a~~~Aeq~~~~~~~~~e~ev~~~~~~e~~~~rv~~i~r~~e~el~~~~~~~~~~~~q~~~ 351 (548)
T COG2268 272 AETEAEVAAWKAETRREAEQAEILAEQAIQEEKAQAEQEVQHAKALEAREMRVGLIERQKETELEPQERSYFINAAQRQA 351 (548)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHh
Confidence 11111111222344444555555555444444333333332 11111111111222222111 111 00001011
Q ss_pred HHHhhhccc-hhhhhhhhhh---hHHHhhhhhHHHHHHhhhHH--H-HHHHHhhhhHHHHHHhhhhchhhhhhhhhhhhh
Q 010828 295 RAEFVSKAN-VEYEAQVQEA---NWELYKKQKEAEAILYQKEK--E-AEAQKATAEAAFYARKQAADGQLYTKLKEAEGL 367 (499)
Q Consensus 295 ~~e~~~~A~-a~~~~~~~~A---eA~~~~~~~~AeA~~~~~~~--e-Aea~k~~AeA~~~~~~~~Aea~~~~~~AEAe~i 367 (499)
..+.+..++ +.++..++++ ++..+..... ++.+.... + |+.++.+-.....+..++|++....+.++|+++
T Consensus 352 ~~~~~a~an~~~~~~~~~~~~~~~a~e~~~~~~--aeq~~~~~~aea~eqe~v~i~~~~e~~~aea~a~~a~~~~~Aea~ 429 (548)
T COG2268 352 QEEAKAAANIAEAIGAQAEAAVETARETEEAER--AEQAALVAAAEAAEQEQVEIAVRAEAAKAEAEAQAAEIKAEAEAI 429 (548)
T ss_pred HHHHHHHhhhHhhhcchhhhhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHH
Confidence 111111111 0111000000 0111111111 11111111 1 122222222222445567788888899999999
Q ss_pred hhhhhhhhhHHHHHHHhhCCchHh--hhHhhhcchhhHHHHHHhhHHHhhcCCCceeeeecCCCCCCCCCCCCcchhhHh
Q 010828 368 VALGKAQGEYLKSISTSLGGDYRA--VKDFLMIDRGVYQEMARINAEAVRGLQPKLSIWTNNESGGEAGGDASSSAMREV 445 (499)
Q Consensus 368 ~a~g~AeAe~~~~~aeA~~~~~~a--~~~~~~i~~~~lp~i~~~~a~p~~~i~~~i~i~~~~~~g~~~~~~g~~~~~~~v 445 (499)
+.+|+|||+++++++|+++....+ ...|.++.+ +||.++...++|++.| |+++|++.+ ++++++..+++....
T Consensus 430 r~kG~AEAea~r~lAEa~~~~~~a~~a~~~~~~vq-~Lp~~~~~~~~~~~~i-~~~kV~~i~---~~~~~st~g~v~a~~ 504 (548)
T COG2268 430 REKGKAEAEAKRALAEAIQVLGDAAAAELFKALVQ-ALPEVAEEAAQPMKNI-DSEKVRVIG---GANGGSTAGKVNAGG 504 (548)
T ss_pred HHhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHHHHhhcccccc-cceeEEecC---Cccccccccchhccc
Confidence 999999999999999999874332 222333333 6999999999999999 999999873 222211223332222
Q ss_pred hhHhhhcChhhHhhhhhcCCCCCCcccc-cccCCC
Q 010828 446 SGIYRALPPLFQTIYDQTGMTPPPFMGT-LAQTGM 479 (499)
Q Consensus 446 ~~~~~~~~~~~~~~~~~tGidl~~~l~~-~~~~~~ 479 (499)
.+ ..+..+.+.++.+||+|+.+.+.+ +++.++
T Consensus 505 ~~--~~l~~l~~~~~~t~gvd~~~~l~~~~~~~G~ 537 (548)
T COG2268 505 LG--LLLMALLEALKKTTGVDVAESLLNELSGNGN 537 (548)
T ss_pred hH--HHHHHHHHHhhccCCCChHhhcCCCCCCCCc
Confidence 22 123346678889999999998877 555554
No 3
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.93 E-value=3.9e-27 Score=234.93 Aligned_cols=178 Identities=15% Similarity=0.159 Sum_probs=154.9
Q ss_pred ccceeEeeeccc-cccccccccceecC-cee-eEeeeccccceeEeeeccccccccccceeeecCCCCCChhhHHHHhhh
Q 010828 7 ASQYLAITGTGI-NDVKLAKKSWVFPG-QYC-TVFDITPVNYDFEVQAMSAEKLEFKLPAVFTIGPREDDRDSLLKYAKL 83 (499)
Q Consensus 7 p~ealVVtg~g~-~rv~~gG~~fviPf-q~v-~~isl~~~~i~i~~~~~T~D~v~V~V~av~~v~v~~~d~~~i~~aa~~ 83 (499)
+++.+||++||+ .+++.||+||+||| +++ ..+|++.++++++.+++|+|+++|+|+++++|+|. ||. ..++..+
T Consensus 1 q~~~~Vv~rfGk~~~~l~pGlhf~~P~i~~v~~~~~~r~~~~~~~~~~lTkD~~~V~vd~~v~yrI~--d~~-~~~~~~~ 77 (262)
T cd03407 1 QSQVAIIERFGKFFKVAWPGCHFVIPLVETVAGRLSLRVQQLDVRVETKTKDNVFVTVVGQIQYRVS--EEN-ATDAFYK 77 (262)
T ss_pred CcEEEEEeecCcccccCCCCeEEEeccccceeeEEeeeEEEecCCCceEcCCCCEEEEEEEEEEEEC--CcH-HHHHHHH
Confidence 478999999998 58889999999998 887 48999999887777789999999999999999996 664 2334445
Q ss_pred cCCCCCCchhHHHHHhhhhcccceeecccccHHHHhhchHHHHHHHHHHhhhcccceeeEEEecccccccccCCcchhcc
Q 010828 84 IAPKDQNSIHVREIVKGIIEGETRVLAASMTMEEVFKGTKEFKQEVFEKVQLELNQFGLLIYNANIKQLVDVPGHEYFSY 163 (499)
Q Consensus 84 ~~~~~~~~~~i~~~~~~~leg~lR~iig~mtleei~~~R~~f~~~V~~~~~~dl~~~Gl~I~sv~I~dI~d~~g~~y~~a 163 (499)
+.+ . ...+...+.+.||+++|+|++++++++|+.|+..|.+.+...|.+|||.|++++|++|++|.. +.++
T Consensus 78 ~~~---~----~~~l~~~~~s~lR~vig~~~l~eil~~R~~I~~~i~~~l~~~l~~~GI~V~~v~I~~i~~p~~--v~~A 148 (262)
T cd03407 78 LGN---P----EEQIQSYVFDVLRARIPKLTLDELFEQKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDAE--VKRA 148 (262)
T ss_pred cCC---H----HHHHHHHHHHHHHHHhcCccHHHHHhhHHHHHHHHHHHHHHHHHhcCcEEEEEEEEecCCCHH--HHHH
Confidence 542 2 235666668999999999999999999999999999999999999999999999999999987 9999
Q ss_pred cchhhHHHHhhhhchhHHHhhhcccccchhccc
Q 010828 164 LGQKTQMEAANQAKVDVAEARMKGEVGAKLREG 196 (499)
Q Consensus 164 lg~~~~A~~~~~A~i~~Aea~r~~~i~~aea~~ 196 (499)
|.....|++.+++.+.+|++++...+..|++++
T Consensus 149 ~~~~~~A~~~~~a~~~~Aea~~~~~i~~A~~ea 181 (262)
T cd03407 149 MNEINAAQRQRVAAVHKAEAEKIKDIKAAEADA 181 (262)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999999999999999999887776666644
No 4
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=99.93 E-value=5.4e-27 Score=230.86 Aligned_cols=185 Identities=15% Similarity=0.117 Sum_probs=157.8
Q ss_pred ccccCccceeEeeecccc-c-cccccccceecC-ceeeEeeeccccceeEee-eccccccccccceeeecCCCCCChhhH
Q 010828 2 FRVASASQYLAITGTGIN-D-VKLAKKSWVFPG-QYCTVFDITPVNYDFEVQ-AMSAEKLEFKLPAVFTIGPREDDRDSL 77 (499)
Q Consensus 2 y~~~~p~ealVVtg~g~~-r-v~~gG~~fviPf-q~v~~isl~~~~i~i~~~-~~T~D~v~V~V~av~~v~v~~~d~~~i 77 (499)
+++|+|++.+|+++||+. + ++.||+||+||| +++.++|++.++++++.. ++|+|+++|+|+++++|+|. ||..+
T Consensus 1 ~~iV~~ge~~Vv~~~Gk~~~~~~~pG~~~~~P~i~~v~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~--d~~~~ 78 (242)
T cd03405 1 LFIVDEGEQAVVLRFGEVVRVVTEPGLHFKLPFIQQVKKFDKRILTLDSDPQRVLTKDKKRLIVDAYAKWRIT--DPLRF 78 (242)
T ss_pred CEEeCCCeEEEEEEcCccccccCCCCeeEEcCCcceEEEEcCEEEeccCCcceEEccCCcEEEEEEEEEEEEc--CHHHH
Confidence 468999999999999984 4 568999999999 999999999987776554 89999999999999999996 78755
Q ss_pred HHHhhhcCCCCCCchhHHHHHhhhhcccceeecccccHHHHhhc-hHHHHHHHHHHhhhcccceeeEEEecccccccccC
Q 010828 78 LKYAKLIAPKDQNSIHVREIVKGIIEGETRVLAASMTMEEVFKG-TKEFKQEVFEKVQLELNQFGLLIYNANIKQLVDVP 156 (499)
Q Consensus 78 ~~aa~~~~~~~~~~~~i~~~~~~~leg~lR~iig~mtleei~~~-R~~f~~~V~~~~~~dl~~~Gl~I~sv~I~dI~d~~ 156 (499)
+ ..+++ ..+.+...+...+.+.+|+++|+|++++++++ |+.|.+.+.+.+..+|.+|||.|++++|++|++|.
T Consensus 79 ~---~~~~~---~~~~~~~~i~~~~~~~lr~vi~~~~~~el~~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~ 152 (242)
T cd03405 79 Y---QAVGG---EERAAETRLDQIVNSALRAEFGKRTLIELVSGERGELMEEIRRAVAEEAKELGIEVVDVRIKRIDLPE 152 (242)
T ss_pred H---HHhcC---hHHHHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHHHHccCcEEEEEEEEeccCCH
Confidence 4 23432 22344577888889999999999999999988 99999999999999999999999999999999999
Q ss_pred CcchhcccchhhHHHHhhhhchhHHHhhhcccccchhccc
Q 010828 157 GHEYFSYLGQKTQMEAANQAKVDVAEARMKGEVGAKLREG 196 (499)
Q Consensus 157 g~~y~~alg~~~~A~~~~~A~i~~Aea~r~~~i~~aea~~ 196 (499)
. +.++|.....+++++.+....+++++++....+++++
T Consensus 153 ~--i~~ai~~~~~ae~~~~a~~~~ae~~~~a~~~~aea~~ 190 (242)
T cd03405 153 E--VSESVYRRMRAERERIAAEFRAEGEEEAERIRADADR 190 (242)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 7 9999999999999999988888887766554444433
No 5
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=99.92 E-value=4e-25 Score=210.67 Aligned_cols=184 Identities=15% Similarity=0.140 Sum_probs=146.3
Q ss_pred CccccCccceeEeeecccc---ccccccccceecC-ceeeEeeeccccceeEeeeccccccccccceeeecCCCCCChhh
Q 010828 1 MFRVASASQYLAITGTGIN---DVKLAKKSWVFPG-QYCTVFDITPVNYDFEVQAMSAEKLEFKLPAVFTIGPREDDRDS 76 (499)
Q Consensus 1 ~y~~~~p~ealVVtg~g~~---rv~~gG~~fviPf-q~v~~isl~~~~i~i~~~~~T~D~v~V~V~av~~v~v~~~d~~~ 76 (499)
.|++|||++.+||..||+. +++.||+||+||| +++..+|++.++++++..+.|+|++.|+++.+++|++. |+.
T Consensus 1 ~~~~V~~g~~gVv~~~g~~~~~~~~~pG~h~~~P~~~~v~~~~~r~~~~~~~~~~~t~d~~~V~v~~~v~y~v~---~~~ 77 (196)
T cd03401 1 SLYNVDGGHRAVLFNRGGGVKDLVYGEGLHFRIPWFQKPIIFDVRARPRNIESTTGSKDLQMVNITLRVLFRPD---ASQ 77 (196)
T ss_pred CEEEECCCcEEEEEEecCccccCccCCceEEEccccceeEEEEeeeeEEEEeecccCCCCeEEEEEEEEEEEeC---HHH
Confidence 4789999999999988862 3789999999999 99999999999777776689999999999999999974 322
Q ss_pred HHHHhhhcCCCCCCchhHHHHHhhhhcccceeecccccHHHHhhchHHHHHHHHHHhhhcccceeeEEEecccccccccC
Q 010828 77 LLKYAKLIAPKDQNSIHVREIVKGIIEGETRVLAASMTMEEVFKGTKEFKQEVFEKVQLELNQFGLLIYNANIKQLVDVP 156 (499)
Q Consensus 77 i~~aa~~~~~~~~~~~~i~~~~~~~leg~lR~iig~mtleei~~~R~~f~~~V~~~~~~dl~~~Gl~I~sv~I~dI~d~~ 156 (499)
.......|+. +....++...+.+.||+++|+||++||+++|+.|...|.+.+...|.+|||.|.++.|++|++|+
T Consensus 78 ~~~~~~~~~~-----~~~~~~i~~~v~~~lR~vi~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~ 152 (196)
T cd03401 78 LPRIYQNLGE-----DYDERVLPSIINEVLKAVVAQFTAEELITQREEVSALIREALTERAKDFGIILDDVSITHLTFSK 152 (196)
T ss_pred HHHHHHHhCc-----chHhhhhcHHHHHHHHHHHccCCHHHHHhhHHHHHHHHHHHHHHHHHhCCeEEEEEEEEeccCCH
Confidence 2222223421 12345666777888999999999999999999999999999999999999999999999999999
Q ss_pred CcchhcccchhhHHHHhhhh---chhHHHhhhcccccchhc
Q 010828 157 GHEYFSYLGQKTQMEAANQA---KVDVAEARMKGEVGAKLR 194 (499)
Q Consensus 157 g~~y~~alg~~~~A~~~~~A---~i~~Aea~r~~~i~~aea 194 (499)
+ |.++|+.+.+++..... .+..|++++++.+.+|++
T Consensus 153 ~--~~~ai~~k~~a~q~~~~a~~~~~~a~~ea~~~~~~A~g 191 (196)
T cd03401 153 E--FTKAVEAKQVAQQEAERAKFVVEKAEQEKQAAVIRAEG 191 (196)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 7 99999977766654332 244555555555444444
No 6
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=99.91 E-value=7.9e-26 Score=231.14 Aligned_cols=185 Identities=14% Similarity=0.121 Sum_probs=152.8
Q ss_pred CccccCccceeEeeecccc-c-------cccccccceecC-ceeeEeeeccccceeEee-eccccccccccceeeecCCC
Q 010828 1 MFRVASASQYLAITGTGIN-D-------VKLAKKSWVFPG-QYCTVFDITPVNYDFEVQ-AMSAEKLEFKLPAVFTIGPR 70 (499)
Q Consensus 1 ~y~~~~p~ealVVtg~g~~-r-------v~~gG~~fviPf-q~v~~isl~~~~i~i~~~-~~T~D~v~V~V~av~~v~v~ 70 (499)
+|++|+|++.+||++||+. + ++.||+||+||| +++.++|++.++++++.. ++|+|+++|+|+++++|+|.
T Consensus 19 ~~~iV~~ge~gVv~~fGk~~~~~~~~~~v~~pGlhf~~P~i~~v~~vd~r~q~~~~~~~~vlTkD~~~V~Vd~~V~yrV~ 98 (317)
T TIGR01932 19 PFFIIKEGERGIITRFGKILKDNNHHVLVYEPGLHFKIPFIEHVKIFDAKIQTMDGRPDRIPTKEKKDIIIDTYIRWRIE 98 (317)
T ss_pred eEEEECCCeEEEEEecCceeccccccccccCCCeEEEeccccEEEEeeeeEEEecCCcceeECCCCCEEEEEEEEEEEEC
Confidence 4789999999999999983 3 346999999998 999999999997776654 89999999999999999996
Q ss_pred CCChhhHHHHhhhcCCCCCCchhHHHHHhhhhcccceeecccccHHHHhhc-hHHH------------------------
Q 010828 71 EDDRDSLLKYAKLIAPKDQNSIHVREIVKGIIEGETRVLAASMTMEEVFKG-TKEF------------------------ 125 (499)
Q Consensus 71 ~~d~~~i~~aa~~~~~~~~~~~~i~~~~~~~leg~lR~iig~mtleei~~~-R~~f------------------------ 125 (499)
||..++ ..+++ .+.+.....+...+.++||+++|++|++|++++ |..+
T Consensus 99 --d~~~~~---~~~~~--~~~~~~~~~l~~~~~~~lR~vig~~tl~eil~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~ 171 (317)
T TIGR01932 99 --DFKKYY---LSTGG--GTISAAEVLIKRKIDDRLRSEIGVLGLKEIVRSSNDQLDTLVSKLALNRGGKINKIAMTITK 171 (317)
T ss_pred --CHHHHH---HHhcC--CCHHHHHHHHHHHHHHHHHHHHccCcHHHHHhcchHHhhhhhchhhccccccccccccccch
Confidence 776544 23321 123446677888889999999999999999975 4444
Q ss_pred -----HHHHHHHhhhcccceeeEEEecccccccccCCcchhcccchhhHHHHhhhhchhHHHhhhcccccchhc
Q 010828 126 -----KQEVFEKVQLELNQFGLLIYNANIKQLVDVPGHEYFSYLGQKTQMEAANQAKVDVAEARMKGEVGAKLR 194 (499)
Q Consensus 126 -----~~~V~~~~~~dl~~~Gl~I~sv~I~dI~d~~g~~y~~alg~~~~A~~~~~A~i~~Aea~r~~~i~~aea 194 (499)
...+++.+..++.+|||.|.++.|++|++|+. +.++|..+..+++++.|....+++++.+..-.+++
T Consensus 172 ~r~~l~~~i~~~~~~~~~~~Gi~V~~V~I~~i~~p~~--v~~Ai~~~~~aere~~a~~~r~ege~~a~~i~a~A 243 (317)
T TIGR01932 172 GREILAREISQIANSQLKDIGIEVVDVRIKKINYSDE--LSESIYNRMRSEREQIARMHRSQGEEKAEEILGKA 243 (317)
T ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEEEEEEecCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66888889999999999999999999999997 99999999999999888888887776655444443
No 7
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=99.91 E-value=8.3e-25 Score=211.46 Aligned_cols=177 Identities=13% Similarity=0.157 Sum_probs=155.8
Q ss_pred cCccceeEeeeccc-cccccccccceecC-cee-eEeeeccccceeEee-eccccccccccceeeecCCCCCChhhHHHH
Q 010828 5 ASASQYLAITGTGI-NDVKLAKKSWVFPG-QYC-TVFDITPVNYDFEVQ-AMSAEKLEFKLPAVFTIGPREDDRDSLLKY 80 (499)
Q Consensus 5 ~~p~ealVVtg~g~-~rv~~gG~~fviPf-q~v-~~isl~~~~i~i~~~-~~T~D~v~V~V~av~~v~v~~~d~~~i~~a 80 (499)
|+|++.+|++.||+ .+++.||+||+||| +++ .++|++.+++++... ++|+|+++|.++++++|+|. ||..+.
T Consensus 1 V~~ge~~Vv~~~G~~~~~~~pG~~f~~P~~~~v~~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~--d~~~~~-- 76 (215)
T cd03403 1 VPQYERGVVERLGKYHRTLGPGLHFIIPFIDRIAYKVDLREQVLDVPPQEVITKDNVTVRVDAVLYYRVV--DPVKAV-- 76 (215)
T ss_pred CCcceEEEEEEcCcCccccCCcEEEEeccceEEEEEEeeEEEEEccCCceeEcCCCCEEEEEEEEEEEEe--cHHHHH--
Confidence 68999999999998 46778899999999 998 899999998777655 89999999999999999985 887543
Q ss_pred hhhcCCCCCCchhHHHHHhhhhcccceeecccccHHHHhhchHHHHHHHHHHhhhcccceeeEEEecccccccccCCcch
Q 010828 81 AKLIAPKDQNSIHVREIVKGIIEGETRVLAASMTMEEVFKGTKEFKQEVFEKVQLELNQFGLLIYNANIKQLVDVPGHEY 160 (499)
Q Consensus 81 a~~~~~~~~~~~~i~~~~~~~leg~lR~iig~mtleei~~~R~~f~~~V~~~~~~dl~~~Gl~I~sv~I~dI~d~~g~~y 160 (499)
..+ +.....+...+.+.||+++|++++++++++|..|.+.|.+.+..+|.+|||.|++|.|++|++|+. |
T Consensus 77 -~~~-------~~~~~~l~~~~~~~lr~~i~~~~~~el~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~i~~i~~p~~--~ 146 (215)
T cd03403 77 -YGV-------EDYRYAISQLAQTTLRSVIGKMELDELLSEREEINAELVEILDEATDPWGVKVERVEIKDIILPQE--I 146 (215)
T ss_pred -hcC-------CCHHHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHHHHHHHHHHhccCeEEEEEEEeeecCCHH--H
Confidence 222 123456667779999999999999999999999999999999999999999999999999999997 9
Q ss_pred hcccchhhHHHHhhhhchhHHHhhhcccccchhcc
Q 010828 161 FSYLGQKTQMEAANQAKVDVAEARMKGEVGAKLRE 195 (499)
Q Consensus 161 ~~alg~~~~A~~~~~A~i~~Aea~r~~~i~~aea~ 195 (499)
.++|.....|++.++|.+.+|++++++.+..+++.
T Consensus 147 ~~ai~~~~~A~~~~~a~i~~A~ge~~a~~~~aea~ 181 (215)
T cd03403 147 QEAMAKQAEAEREKRAKIIEAEGERQAAILLAEAA 181 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999988877666553
No 8
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=99.91 E-value=3e-25 Score=221.10 Aligned_cols=181 Identities=10% Similarity=0.138 Sum_probs=152.3
Q ss_pred ccccCccceeEeeeccc-cccccccccceecC-ceeeEeeeccccceeEe--eeccccccccccceeeecCCCCCChhhH
Q 010828 2 FRVASASQYLAITGTGI-NDVKLAKKSWVFPG-QYCTVFDITPVNYDFEV--QAMSAEKLEFKLPAVFTIGPREDDRDSL 77 (499)
Q Consensus 2 y~~~~p~ealVVtg~g~-~rv~~gG~~fviPf-q~v~~isl~~~~i~i~~--~~~T~D~v~V~V~av~~v~v~~~d~~~i 77 (499)
+++|+|++.+||++||+ .+++.||+||+||| +++.++|++.+. .+.. .++|+|+++|.|+++++|+|. ||..+
T Consensus 1 ~~iV~~ge~~Vv~~fGk~~~~l~pGl~~~~P~i~~v~~~~~~~~~-~~~~~~~v~T~D~~~v~vd~~v~yrI~--d~~~~ 77 (261)
T TIGR01933 1 IYTIGEAERGVVLRFGKYHRTVDPGLNWKPPFIEEVYPVNVTAVR-NLRKQGLMLTGDENIVNVEMNVQYRIT--DPYKY 77 (261)
T ss_pred CEEeCCCeEEEEEEcCccccccCCcceEECCCceEEEEeeeEEEE-ecCCcCeEEeCCCCEEEEEEEEEEEEC--CHHHH
Confidence 47899999999999998 57889999999999 999999987543 2323 279999999999999999996 88744
Q ss_pred HHHhhhcCCCCCCchhHHHHHhhhhcccceeecccccHHHHhh-chHHHHHHHHHHhhhcccce--eeEEEecccccccc
Q 010828 78 LKYAKLIAPKDQNSIHVREIVKGIIEGETRVLAASMTMEEVFK-GTKEFKQEVFEKVQLELNQF--GLLIYNANIKQLVD 154 (499)
Q Consensus 78 ~~aa~~~~~~~~~~~~i~~~~~~~leg~lR~iig~mtleei~~-~R~~f~~~V~~~~~~dl~~~--Gl~I~sv~I~dI~d 154 (499)
. .+. +.....+...+.+.+|+++|+||++++++ +|+.|...|.+.+...+..| ||.|+++.|++|++
T Consensus 78 ~---~~~-------~~~~~~l~~~~~s~lR~vig~~~l~eil~~~R~~i~~~i~~~l~~~~~~~~~GI~V~~v~I~~i~~ 147 (261)
T TIGR01933 78 L---FSV-------ENPEDSLRQATDSALRGVIGDSTMDDILTEGRSQIREDTKERLNEIIDNYDLGITVTDVNFQSARP 147 (261)
T ss_pred H---HhC-------CCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEEecCC
Confidence 2 222 23456677788999999999999999998 89999999999999999966 99999999999999
Q ss_pred cCCcchhcccchhhHHHHhhhhchhHHHhhhcccccchhcccc
Q 010828 155 VPGHEYFSYLGQKTQMEAANQAKVDVAEARMKGEVGAKLREGQ 197 (499)
Q Consensus 155 ~~g~~y~~alg~~~~A~~~~~A~i~~Aea~r~~~i~~aea~~~ 197 (499)
|.. +.++|.....++..+.+.+.+|++++...+..|+++++
T Consensus 148 p~~--v~~a~~~~~~a~q~~~~~~~~ae~~~~~~~~~a~~~a~ 188 (261)
T TIGR01933 148 PEE--VKEAFDDVIIAREDEERYINEAEAYANEVVPKARGDAQ 188 (261)
T ss_pred CHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 997 99999999999888888888888877766665655443
No 9
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=99.91 E-value=4.1e-25 Score=225.97 Aligned_cols=187 Identities=10% Similarity=0.079 Sum_probs=158.9
Q ss_pred CccccCccceeEeeecccc-c-------cccccccceecC-ceeeEeeeccccceeEee-eccccccccccceeeecCCC
Q 010828 1 MFRVASASQYLAITGTGIN-D-------VKLAKKSWVFPG-QYCTVFDITPVNYDFEVQ-AMSAEKLEFKLPAVFTIGPR 70 (499)
Q Consensus 1 ~y~~~~p~ealVVtg~g~~-r-------v~~gG~~fviPf-q~v~~isl~~~~i~i~~~-~~T~D~v~V~V~av~~v~v~ 70 (499)
++++|+|++.+||++||+. + ++.||+||+||| +++.++|++.++++++.+ ++|+|+++|+||++++|+|+
T Consensus 19 s~~iV~ege~gVV~rFGk~~~~~~~~~~~l~PGLhf~iPfid~V~~vdvR~q~~d~~~~~vlT~D~~~V~VD~~V~yrI~ 98 (334)
T PRK11029 19 SVFVVKEGERGIVLRFGKVLRDDDNKPLVYAPGLHFKIPFIETVKMLDARIQTMDNQADRFVTKEKKDLIVDSYIKWRIS 98 (334)
T ss_pred eEEEECCCeEEEEEECCceeccccccccccCCceEEEcCCceEEEEEeeEEEEeeCCCceEEcCCCCEEEEEEEEEEEEC
Confidence 3689999999999999984 3 478999999999 999999999987777765 89999999999999999996
Q ss_pred CCChhhHHHHhhhcCCCCCCchhHHHHHhhhhcccceeecccccHHHHhh-chHHHHHHHHHHhhh--------------
Q 010828 71 EDDRDSLLKYAKLIAPKDQNSIHVREIVKGIIEGETRVLAASMTMEEVFK-GTKEFKQEVFEKVQL-------------- 135 (499)
Q Consensus 71 ~~d~~~i~~aa~~~~~~~~~~~~i~~~~~~~leg~lR~iig~mtleei~~-~R~~f~~~V~~~~~~-------------- 135 (499)
||..++.. +.+ + +.......+...+.+.||+++|+||++++++ +|..+...+++.+..
T Consensus 99 --Dp~~~~~~---~~~-~-n~~~a~~~l~~~v~salR~viG~~tldei~~~~R~~i~~~v~~~l~~~~~~~~~~~~~~~~ 171 (334)
T PRK11029 99 --DFSRYYLA---TGG-G-DISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLDVRDALNSGSAGTEDEVATPAA 171 (334)
T ss_pred --CHHHHHHH---hcC-C-cHHHHHHHHHHHHHHHHHHHHcccCHHHHHHhhHHHHHHHHHHHHHHhhhccccccccccc
Confidence 88766532 221 1 2334556777778999999999999999997 699999999998884
Q ss_pred -------------------------cccceeeEEEecccccccccCCcchhcccchhhHHHHhhhhchhHHHhhhccccc
Q 010828 136 -------------------------ELNQFGLLIYNANIKQLVDVPGHEYFSYLGQKTQMEAANQAKVDVAEARMKGEVG 190 (499)
Q Consensus 136 -------------------------dl~~~Gl~I~sv~I~dI~d~~g~~y~~alg~~~~A~~~~~A~i~~Aea~r~~~i~ 190 (499)
.+..||++|.+|+|++|++|.. +.++|.....+++.+.|....+++++++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GI~V~~V~i~~i~~P~~--v~~ai~~~~~Aere~~a~~~~aege~~a~~~ 249 (334)
T PRK11029 172 DDAIASAAERVEAETKGKVPVINPNSMAALGIEVVDVRIKQINLPTE--VSDAIYNRMRAEREAVARRHRSQGQEEAEKL 249 (334)
T ss_pred ccccccchhhcccccccccccccccccccCCcEEEEEEEEecCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999997 9999999999999999999999999887765
Q ss_pred chhccc
Q 010828 191 AKLREG 196 (499)
Q Consensus 191 ~aea~~ 196 (499)
.++++.
T Consensus 250 ~a~A~~ 255 (334)
T PRK11029 250 RATADY 255 (334)
T ss_pred HHHHHh
Confidence 555543
No 10
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=99.90 E-value=8.7e-25 Score=218.32 Aligned_cols=184 Identities=13% Similarity=0.106 Sum_probs=148.4
Q ss_pred CccccCccceeEeeeccc-cccccccccceecC-ceeeEee-ec----------cccce-e-Ee-eecccccccccccee
Q 010828 1 MFRVASASQYLAITGTGI-NDVKLAKKSWVFPG-QYCTVFD-IT----------PVNYD-F-EV-QAMSAEKLEFKLPAV 64 (499)
Q Consensus 1 ~y~~~~p~ealVVtg~g~-~rv~~gG~~fviPf-q~v~~is-l~----------~~~i~-i-~~-~~~T~D~v~V~V~av 64 (499)
+|++|||++.+||++||+ .+++.||+||+||| +++.+++ ++ ..... . +. .++|+|+++|+|+++
T Consensus 14 s~~~V~~ge~gVV~~fGk~~~~~~pGlh~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~T~D~~~v~vd~~ 93 (266)
T cd03404 14 GFYIVQPGERGVVLRFGKYSRTVEPGLHWKLPYPIEVVEVVPVFQLRSVGIPVRVGSVRSVPGESLMLTGDENIVDVEFA 93 (266)
T ss_pred EEEEECCCceEEeEEcCccccccCCceeEecCCCcEEEEEecceeEEeeccccccccccCCCcccceEeCCCCEEEEEEE
Confidence 378999999999999998 46778999999999 7764332 21 11111 1 12 379999999999999
Q ss_pred eecCCCCCChhhHHHHhhhcCCCCCCchhHHHHHhhhhcccceeecccccHHHHhhc-hHHHHHHHHHHhhhcccce--e
Q 010828 65 FTIGPREDDRDSLLKYAKLIAPKDQNSIHVREIVKGIIEGETRVLAASMTMEEVFKG-TKEFKQEVFEKVQLELNQF--G 141 (499)
Q Consensus 65 ~~v~v~~~d~~~i~~aa~~~~~~~~~~~~i~~~~~~~leg~lR~iig~mtleei~~~-R~~f~~~V~~~~~~dl~~~--G 141 (499)
++|+|. ||..++ ..+ ......+...+.+++|+++|+||+++++++ |+.|.+.|.+.+...+..| |
T Consensus 94 v~yrI~--d~~~~~---~~~-------~~~~~~l~~~~~~~lr~~i~~~~~~eil~~~R~~i~~~i~~~l~~~~~~~~~G 161 (266)
T cd03404 94 VQYRIS--DPYDYL---FNV-------RDPEGTLRQAAESAMREVVGRSTLDDVLTEGREEIAQDVRELLQAILDAYKAG 161 (266)
T ss_pred EEEEEC--CHHHHH---hhC-------CCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHhhccCCC
Confidence 999996 887432 222 123456777779999999999999999997 9999999999999999876 9
Q ss_pred eEEEecccccccccCCcchhcccchhhHHHHhhhhchhHHHhhhcccccchhccccc
Q 010828 142 LLIYNANIKQLVDVPGHEYFSYLGQKTQMEAANQAKVDVAEARMKGEVGAKLREGQT 198 (499)
Q Consensus 142 l~I~sv~I~dI~d~~g~~y~~alg~~~~A~~~~~A~i~~Aea~r~~~i~~aea~~~~ 198 (499)
+.|.++.|++|++|++ +.++|.....++..+++.+.+++++++..+..|++++++
T Consensus 162 i~v~~v~i~~i~~p~~--i~~a~~~~~~A~q~~~~~~~eae~~a~~~~~~A~~ea~~ 216 (266)
T cd03404 162 IEIVGVNLQDADPPEE--VQDAFDDVNKARQDRERLINEAEAYANEVVPKARGEAAR 216 (266)
T ss_pred eEEEEEEEEeCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Confidence 9999999999999997 999999999999998888888888877776666665433
No 11
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=99.89 E-value=1.8e-25 Score=213.83 Aligned_cols=182 Identities=10% Similarity=0.152 Sum_probs=156.0
Q ss_pred cccCccceeEeeeccc-cccccccccceecC-ceeeE-eeeccccceeEee-eccccccccccceeeecCCCCCChhhHH
Q 010828 3 RVASASQYLAITGTGI-NDVKLAKKSWVFPG-QYCTV-FDITPVNYDFEVQ-AMSAEKLEFKLPAVFTIGPREDDRDSLL 78 (499)
Q Consensus 3 ~~~~p~ealVVtg~g~-~rv~~gG~~fviPf-q~v~~-isl~~~~i~i~~~-~~T~D~v~V~V~av~~v~v~~~d~~~i~ 78 (499)
+.||+.+++||++||+ .+++.||+||.+|| +++.+ +++....+.+.-+ ++|+|||.|.++++.||++. ||-. .
T Consensus 10 ~~VpQ~~a~VvER~GkF~~iLePG~~fl~p~~d~i~~v~~lkeia~~~~~q~aiTkDNV~v~idgvly~rv~--dp~~-~ 86 (301)
T KOG2620|consen 10 RFVPQQEAAVVERFGKFHRILEPGLHFLPPVIDKIAYVHSLKEIAILDPKQEAITKDNVFVQIDGVLYYRVV--DPYA-D 86 (301)
T ss_pred EeechhHhHHHHHhhhhhhhcCCcceechhhhhhHHHHHHHHHHhhcccccceeecccEEEEEEEEEEEEEe--cccc-c
Confidence 4599999999999999 58999999999998 76654 3444343333333 89999999999999999986 7741 1
Q ss_pred HHhhhcCCCCCCchhHHHHHhhhhcccceeecccccHHHHhhchHHHHHHHHHHhhhcccceeeEEEecccccccccCCc
Q 010828 79 KYAKLIAPKDQNSIHVREIVKGIIEGETRVLAASMTMEEVFKGTKEFKQEVFEKVQLELNQFGLLIYNANIKQLVDVPGH 158 (499)
Q Consensus 79 ~aa~~~~~~~~~~~~i~~~~~~~leg~lR~iig~mtleei~~~R~~f~~~V~~~~~~dl~~~Gl~I~sv~I~dI~d~~g~ 158 (499)
..|.++.++..+|..++ .+.+|+-+|.|||+.+|..|+.++..|.+.++..+..||+++..+.|.||.+|.+
T Consensus 87 ---dAsYgvenp~~aI~qla----qttmRsevgkltLD~vFeer~~ln~sI~eainkA~~~wG~~clr~eIrDI~pp~~- 158 (301)
T KOG2620|consen 87 ---DASYGVENPEYAIQQLA----QTTMRSEVGKLTLDKVFEERNSLNKSIVEAINKAMEAWGYECLRYEIRDIEPPPS- 158 (301)
T ss_pred ---ccccccCCHHHHHHHHH----HHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCHH-
Confidence 22334555667888888 6678999999999999999999999999999999999999999999999999998
Q ss_pred chhcccchhhHHHHhhhhchhHHHhhhcccccchhccc
Q 010828 159 EYFSYLGQKTQMEAANQAKVDVAEARMKGEVGAKLREG 196 (499)
Q Consensus 159 ~y~~alg~~~~A~~~~~A~i~~Aea~r~~~i~~aea~~ 196 (499)
+..+|..+..|++.++|.+.++|++|+..|.+||++.
T Consensus 159 -V~~AM~~q~~AeR~krAailesEger~~~InrAEGek 195 (301)
T KOG2620|consen 159 -VKRAMNMQNEAERMKRAAILESEGERIAQINRAEGEK 195 (301)
T ss_pred -HHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhhcchh
Confidence 9999999999999999999999999999998888754
No 12
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.89 E-value=2.5e-23 Score=207.98 Aligned_cols=182 Identities=12% Similarity=0.040 Sum_probs=148.7
Q ss_pred ccccCccceeEeeecccc--ccccccccceecC-ceeeEeeeccccceeE-eeeccccccccccceeeecCCCCCChhhH
Q 010828 2 FRVASASQYLAITGTGIN--DVKLAKKSWVFPG-QYCTVFDITPVNYDFE-VQAMSAEKLEFKLPAVFTIGPREDDRDSL 77 (499)
Q Consensus 2 y~~~~p~ealVVtg~g~~--rv~~gG~~fviPf-q~v~~isl~~~~i~i~-~~~~T~D~v~V~V~av~~v~v~~~d~~~i 77 (499)
+++|+|++.+||++||+. .+..||+||+||| +++..++.+.++.+++ ..+.|+|++.|++|.+..|.+. ||..+
T Consensus 5 v~iV~ege~gVV~RfGkv~~~~l~PGLHfkiPfId~V~~v~vrlq~~~~~~~~v~TkDg~~ItvD~i~v~~iv--dp~~~ 82 (280)
T cd03406 5 LHKIEEGHVGVYYRGGALLTSTSGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFL--IPDSV 82 (280)
T ss_pred EEEECCCeEEEEEECCcccccccCCceEEecCCceEEEEEEeEEEEeccCCcccccCCCcEEEEEEEEEEEec--CHHHH
Confidence 678999999999999983 4668899999999 9998899988766553 4478999999999964333332 88877
Q ss_pred HHHhhhcCCCCCCchhHHHHHhhhhcccceeecccccHHHHhh-chHHHHHHHHHHhhhcccce--eeEEEecccccccc
Q 010828 78 LKYAKLIAPKDQNSIHVREIVKGIIEGETRVLAASMTMEEVFK-GTKEFKQEVFEKVQLELNQF--GLLIYNANIKQLVD 154 (499)
Q Consensus 78 ~~aa~~~~~~~~~~~~i~~~~~~~leg~lR~iig~mtleei~~-~R~~f~~~V~~~~~~dl~~~--Gl~I~sv~I~dI~d 154 (499)
......|+ .+....++.+.+.+.+|.++|+++++++++ +|+.+...|.+.+...|+.| ||.|+++.|+++++
T Consensus 83 ~~~~~~y~-----~~~~~~~I~~~Vrsavr~vig~~tldeVis~~Rd~I~~~I~~~l~e~l~~y~~GI~I~dV~I~~id~ 157 (280)
T cd03406 83 YDIVKNYT-----ADYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKLALQKDLTRMAPGLEIQAVRVTKPKI 157 (280)
T ss_pred HHHHHHHh-----HhhHHHHHHHHHHHHHHHHhhhCCHHHHHhccHHHHHHHHHHHHHHHHhccCCCcEEEEEEEEecCC
Confidence 77654443 134688888888999999999999999998 79999999999999999988 99999999999999
Q ss_pred cCCcchhcccchhhHHHHhhh--------hchhHHHhhhcccccchh
Q 010828 155 VPGHEYFSYLGQKTQMEAANQ--------AKVDVAEARMKGEVGAKL 193 (499)
Q Consensus 155 ~~g~~y~~alg~~~~A~~~~~--------A~i~~Aea~r~~~i~~ae 193 (499)
|.. +.++| ..+.+++.+. |.+.+||++|...+.+|+
T Consensus 158 P~~--V~~af-erM~aER~k~~~~~~~~~~~~~~ae~~~~~~~~~a~ 201 (280)
T cd03406 158 PEA--IRRNY-ELMEAEKTKLLIAIQKQKVVEKEAETERKKAVIEAE 201 (280)
T ss_pred CHH--HHHHH-HHHHHHHHhhhhccchhHHHHHHhhHHHHHHHHHHH
Confidence 997 88888 5778888877 777777766655554443
No 13
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=99.87 E-value=3.3e-23 Score=217.42 Aligned_cols=185 Identities=10% Similarity=0.116 Sum_probs=155.3
Q ss_pred ccccCccceeEeeeccc-cccccccccceecC-ceeeEeeeccccceeEe-eeccccccccccceeeecCCCCCChhhHH
Q 010828 2 FRVASASQYLAITGTGI-NDVKLAKKSWVFPG-QYCTVFDITPVNYDFEV-QAMSAEKLEFKLPAVFTIGPREDDRDSLL 78 (499)
Q Consensus 2 y~~~~p~ealVVtg~g~-~rv~~gG~~fviPf-q~v~~isl~~~~i~i~~-~~~T~D~v~V~V~av~~v~v~~~d~~~i~ 78 (499)
|++|+|+|..||++||+ .+++.||+||++|| ++|.+++++.+...... ..+|+|+..|+|+.+++|+|. ||..++
T Consensus 97 ~yiV~e~E~gVV~rFGk~~~~l~PGLhfk~PfId~V~~vdv~~~~~~~~~~~mLT~D~n~V~Vd~~VqYrI~--Dp~~~l 174 (419)
T PRK10930 97 FYTIKEAERGVVTRFGKFSHLVEPGLNWKPTFIDEVKPVNVEAVRELAASGVMLTSDENVVRVEMNVQYRVT--DPEKYL 174 (419)
T ss_pred EEEECCCeEEEEEECCcCcceeCCceEEecCceEEEEEEEeEEEEEccCcceeECCCCCEEEEEEEEEEEEC--CHHHHH
Confidence 68999999999999998 47789999999999 99999988765322122 279999999999999999996 887543
Q ss_pred HHhhhcCCCCCCchhHHHHHhhhhcccceeecccccHHHHhh-chHHHHHHHHHHhhhcccce--eeEEEeccccccccc
Q 010828 79 KYAKLIAPKDQNSIHVREIVKGIIEGETRVLAASMTMEEVFK-GTKEFKQEVFEKVQLELNQF--GLLIYNANIKQLVDV 155 (499)
Q Consensus 79 ~aa~~~~~~~~~~~~i~~~~~~~leg~lR~iig~mtleei~~-~R~~f~~~V~~~~~~dl~~~--Gl~I~sv~I~dI~d~ 155 (499)
..+ ......+...+++.||++||+++|+++++ +|..+...|++.+...|+.| ||+|++|+|+++++|
T Consensus 175 ---f~v-------~~~~~~L~~~~~SAlR~vIG~~tldevLt~~R~~I~~~i~~~l~e~l~~y~~GI~V~~V~I~di~pP 244 (419)
T PRK10930 175 ---FSV-------TSPDDSLRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQRELEETIRPYDMGITLLDVNFQAARPP 244 (419)
T ss_pred ---Hhc-------cCHHHHHHHHHHHHHHHHHccCCHHHHhhccHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEeecCCC
Confidence 222 23456667777999999999999999998 59999999999999999986 999999999999999
Q ss_pred CCcchhcccchhhHHHHhhhhchhHHHhhhcccccchhccccchh
Q 010828 156 PGHEYFSYLGQKTQMEAANQAKVDVAEARMKGEVGAKLREGQTLQ 200 (499)
Q Consensus 156 ~g~~y~~alg~~~~A~~~~~A~i~~Aea~r~~~i~~aea~~~~~~ 200 (499)
.. +.+++.....|+..+++.|.+|++.+...+.+|++++.+..
T Consensus 245 ~e--V~~Af~~v~~Are~~~~~i~eAeayan~iip~A~gea~~ii 287 (419)
T PRK10930 245 EE--VKAAFDDAIAARENEQQYIREAEAYTNEVQPRANGQAQRIL 287 (419)
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 86 89999999899888889999999888777777776554433
No 14
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.85 E-value=1.1e-21 Score=190.43 Aligned_cols=167 Identities=19% Similarity=0.162 Sum_probs=143.9
Q ss_pred ccccCccceeEeeecccc-ccc-cccccceecC-ceeeEeeeccccceeEee-eccccccccccceeeecCCCCCChhhH
Q 010828 2 FRVASASQYLAITGTGIN-DVK-LAKKSWVFPG-QYCTVFDITPVNYDFEVQ-AMSAEKLEFKLPAVFTIGPREDDRDSL 77 (499)
Q Consensus 2 y~~~~p~ealVVtg~g~~-rv~-~gG~~fviPf-q~v~~isl~~~~i~i~~~-~~T~D~v~V~V~av~~v~v~~~d~~~i 77 (499)
+++++|++..|++.||+. +++ .||+||+||| +. .++|++.++++++.. .+|+|+.+|.|+++++|+|. ||..+
T Consensus 2 ~~iV~~ge~~Vv~rfGk~~~t~~~pGL~~~~P~~~~-~~vd~R~~~~~~~~~~v~T~D~~~v~V~~~V~~rV~--Dp~ka 78 (219)
T cd03402 2 LFVVEPNQARVLVLFGRYIGTIRRTGLRWVNPFSSK-KRVSLRVRNFESEKLKVNDANGNPIEIAAVIVWRVV--DTAKA 78 (219)
T ss_pred eEEECCCeeEEEEEcCcCcccccCCceEEEeccceE-EEEeeEEEEecCCCceeEcCCCCEEEEEEEEEEEEc--CHHHH
Confidence 678999999999999984 455 7899999999 65 679999998777766 89999999999999999996 88744
Q ss_pred HHHhhhcCCCCCCchhHHHHHhhhhcccceeecccccHHHHhh-------chHHHHHHHHHHhhhcccceeeEEEecccc
Q 010828 78 LKYAKLIAPKDQNSIHVREIVKGIIEGETRVLAASMTMEEVFK-------GTKEFKQEVFEKVQLELNQFGLLIYNANIK 150 (499)
Q Consensus 78 ~~aa~~~~~~~~~~~~i~~~~~~~leg~lR~iig~mtleei~~-------~R~~f~~~V~~~~~~dl~~~Gl~I~sv~I~ 150 (499)
+ ... +.....+...+++.||+++|+++++++++ +|+.++..+.+.+...+..||++|.+++|+
T Consensus 79 ~---~~v-------~~~~~~l~~~~~salR~vig~~~~d~il~~~~~l~~~r~~I~~~l~~~l~~~l~~~GI~V~~v~I~ 148 (219)
T cd03402 79 V---FNV-------DDYEEFVHIQSESALRHVASQYPYDDPVNKETSLRGNSDEVSDELARELQERLAVAGVEVVEARIT 148 (219)
T ss_pred H---HHc-------CCHHHHHHHHHHHHHHHHHccCcHHHHhccccccccCHHHHHHHHHHHHHHHHHhhCcEEEEEEEE
Confidence 2 222 12355666677999999999999999986 579999999999999999999999999999
Q ss_pred cccccCCcchhcccchhhHHHHhhhhchhHHHh
Q 010828 151 QLVDVPGHEYFSYLGQKTQMEAANQAKVDVAEA 183 (499)
Q Consensus 151 dI~d~~g~~y~~alg~~~~A~~~~~A~i~~Aea 183 (499)
++++|+. +.++|-..+.|++...|+-..+++
T Consensus 149 ~l~~p~e--i~~am~~R~~Ae~~~~Ar~~~~~G 179 (219)
T cd03402 149 HLAYAPE--IAQAMLQRQQASAIIAARRKIVEG 179 (219)
T ss_pred eecCCHH--HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999997 999999999999988888777764
No 15
>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance. A variety of proteins belong to this family. These include the prohibitins, cytoplasmic anti-proliferative proteins and stomatin, an erythrocyte membrane protein. Bacterial HflC protein also belongs to this family. Note: Band 4.1 (IPR021187 from INTERPRO) and Band 7 proteins refer to human erythrocyte membrane proteins separated by SDS polyacrylamide gels and stained with coomassie blue [].; PDB: 2RPB_A 3BK6_B 1WIN_A.
Probab=99.84 E-value=1.1e-21 Score=182.92 Aligned_cols=172 Identities=19% Similarity=0.254 Sum_probs=115.0
Q ss_pred cccCccceeEeeeccc-cccccccccceecC-ceeeEeeeccccceeEe---eeccccccccccceeeecCCCCCChhhH
Q 010828 3 RVASASQYLAITGTGI-NDVKLAKKSWVFPG-QYCTVFDITPVNYDFEV---QAMSAEKLEFKLPAVFTIGPREDDRDSL 77 (499)
Q Consensus 3 ~~~~p~ealVVtg~g~-~rv~~gG~~fviPf-q~v~~isl~~~~i~i~~---~~~T~D~v~V~V~av~~v~v~~~d~~~i 77 (499)
++||||+++|++++|+ ..++.+|+||+||| +++..++++.+++++.. .+.|+|++++.+++.++|+|. |+..+
T Consensus 1 ~~V~~g~~~V~~~~G~~~~~~~~G~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~t~D~~~v~v~~~v~y~i~--~~~~~ 78 (179)
T PF01145_consen 1 YTVPPGEVGVVVRFGKVKDVLGPGLHFVIPFIQKVYVYPTRVQTIEFTREPITVRTKDGVPVDVDVTVTYRIE--DPPKF 78 (179)
T ss_dssp -------------------------------EEE--S--SS-EEEEEEE--EEEE-TTS-EEEEEEEEEEEES---CCCC
T ss_pred CEeCCCEEEEEEECCeEeEEECCCeEEEeCCcCeEEEEeCEEEecccchhhhhhhhcccceeeeeEEEEEEec--hHHHH
Confidence 4799999999999998 45678899999998 99999999999999988 599999999999999999995 55533
Q ss_pred HHHhhhcCCCCCCchhHHHHHhhhhcccceeecccccHHHHhhchHHHHHHHHHHhhhcccceeeEEEecccccccccCC
Q 010828 78 LKYAKLIAPKDQNSIHVREIVKGIIEGETRVLAASMTMEEVFKGTKEFKQEVFEKVQLELNQFGLLIYNANIKQLVDVPG 157 (499)
Q Consensus 78 ~~aa~~~~~~~~~~~~i~~~~~~~leg~lR~iig~mtleei~~~R~~f~~~V~~~~~~dl~~~Gl~I~sv~I~dI~d~~g 157 (499)
. ..|. ...+.....+...+.+++|+++++|++++++++|..|.+.+.+.+...|.+||++|.+++|.++++|+.
T Consensus 79 ~---~~~~---~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~v~~~l~~~~~~~Gi~i~~v~i~~~~~~~~ 152 (179)
T PF01145_consen 79 V---QNYE---GGEEDPENLLRQIVESALREVISSYSLEEIYSNREEIADEVREQLQEALEEYGIEITSVQITDIDPPQE 152 (179)
T ss_dssp C---CCCS---S-HCHHHHHHHHHHHHHHHHHHHCS-HHHHHHTHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEECTT
T ss_pred H---Hhhh---cchhhhhhhhhhhhhhhhheEeeeeehHHhhhhhhhhhHhHHHHHhhhccccEEEEEEEEEeecCCCHH
Confidence 3 2331 134678899999999999999999999999999999999999999999999999999999999999997
Q ss_pred cchhcccchhhHHHHhh-hhchhHHHhh
Q 010828 158 HEYFSYLGQKTQMEAAN-QAKVDVAEAR 184 (499)
Q Consensus 158 ~~y~~alg~~~~A~~~~-~A~i~~Aea~ 184 (499)
|.+++.....++... ++.+.+|+++
T Consensus 153 --~~~~i~~~~~a~~~~~~~~~~~a~~e 178 (179)
T PF01145_consen 153 --VEEAIEEKQRAEQEAQQAEIERAEAE 178 (179)
T ss_dssp --HHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999888888877 6766666654
No 16
>smart00244 PHB prohibitin homologues. prohibitin homologues
Probab=99.83 E-value=4.9e-21 Score=175.53 Aligned_cols=153 Identities=12% Similarity=0.159 Sum_probs=131.9
Q ss_pred CccccCccceeEeeeccc-cccccccccceecC-ceeeEeeeccccceeEee-eccccccccccceeeecCCCCCChhhH
Q 010828 1 MFRVASASQYLAITGTGI-NDVKLAKKSWVFPG-QYCTVFDITPVNYDFEVQ-AMSAEKLEFKLPAVFTIGPREDDRDSL 77 (499)
Q Consensus 1 ~y~~~~p~ealVVtg~g~-~rv~~gG~~fviPf-q~v~~isl~~~~i~i~~~-~~T~D~v~V~V~av~~v~v~~~d~~~i 77 (499)
+|++|+|++++|++++|+ .++..||+||+||| +++.++|++.+++.++.. ++|+|+++|.++++++|+|. ||..+
T Consensus 2 ~~~~V~~g~~~v~~~~G~~~~~~~pG~~~~~P~~~~~~~~~~~~~~~~~~~~~~~t~d~~~v~v~~~v~~rv~--d~~~~ 79 (160)
T smart00244 2 AIKVVGEGEAGVVERLGRVLRVLGPGLHFLIPFIDRVKKVDLRAQTDDVPPQEIITKDNVKVSVDAVVYYRVL--DPLKA 79 (160)
T ss_pred cEEEEcccEEEEEEecCccccccCCCEEEEecceeEEEEEeeEEEeecCCceEEEecCCcEEEEeEEEEEEEc--cHHHH
Confidence 588999999999999998 46788999999999 999999999987766554 79999999999999999985 88643
Q ss_pred HHHhhhcCCCCCCchhHHHHHhhhhcccceeecccccHHHHhh-chHHHHHHHHHHhhhcccceeeEEEecccccccccC
Q 010828 78 LKYAKLIAPKDQNSIHVREIVKGIIEGETRVLAASMTMEEVFK-GTKEFKQEVFEKVQLELNQFGLLIYNANIKQLVDVP 156 (499)
Q Consensus 78 ~~aa~~~~~~~~~~~~i~~~~~~~leg~lR~iig~mtleei~~-~R~~f~~~V~~~~~~dl~~~Gl~I~sv~I~dI~d~~ 156 (499)
+ .++.+ .+ ...+...+.+++|+++++++++++++ +|..|.+.+.+.+...+.+||++|.++.|++|++|+
T Consensus 80 ~---~~~~~----~~--~~~l~~~i~~~ir~~i~~~~~~~i~~~~r~~i~~~v~~~l~~~~~~~Gi~i~~v~i~~i~~p~ 150 (160)
T smart00244 80 V---YRVLD----AD--YAVIEQLAQTTLRSVIGKMTLDELLTDEREKISENIREELNERAEAWGIEVEDVEIKDIRLPE 150 (160)
T ss_pred h---hhcCC----HH--HHHHHHHHHHHHHHHHccccHHHHHHhhHHHHHHHHHHHHHHHHHhCCCEEEEEEEEecCCCH
Confidence 2 33332 11 14677777999999999999999999 699999999999999999999999999999999998
Q ss_pred Ccchhcccch
Q 010828 157 GHEYFSYLGQ 166 (499)
Q Consensus 157 g~~y~~alg~ 166 (499)
. +.++|..
T Consensus 151 ~--i~~ai~~ 158 (160)
T smart00244 151 E--IQEAMEQ 158 (160)
T ss_pred H--HHHHHHh
Confidence 7 8888753
No 17
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=5e-21 Score=193.62 Aligned_cols=179 Identities=12% Similarity=0.169 Sum_probs=153.5
Q ss_pred ccccCccceeEeeeccc-ccccc-ccccceecC-c---e-eeEeeecccccee-Eee-eccccccccccceeeecCCCCC
Q 010828 2 FRVASASQYLAITGTGI-NDVKL-AKKSWVFPG-Q---Y-CTVFDITPVNYDF-EVQ-AMSAEKLEFKLPAVFTIGPRED 72 (499)
Q Consensus 2 y~~~~p~ealVVtg~g~-~rv~~-gG~~fviPf-q---~-v~~isl~~~~i~i-~~~-~~T~D~v~V~V~av~~v~v~~~ 72 (499)
+++++|++.+++.+||+ .+++. ||+||+||| + . +.+++++.+++++ +.+ ++|+|+..|+||++++|+|.
T Consensus 21 ~~~v~~~~~~vv~r~G~~~~~~~~pGl~f~iP~~~~~~~~~~~~~~~~~~~d~~~~q~viT~D~~~V~vd~~v~~rv~-- 98 (291)
T COG0330 21 IFVVKEGERGVVLRFGRYTRTLGEPGLHFKIPFPEAIEEVVVRVDLRERTLDVGPPQEVITKDNVIVSVDAVVQYRVT-- 98 (291)
T ss_pred eEEEcCCceEEEEEecceeeecCCCceEEEcCCccceeeeeeeeeeEEEEeccCCcceEEecCCCEEEEEEEEEEEEc--
Confidence 57899999999999999 58888 999999998 2 3 3567888777777 556 89999999999999999996
Q ss_pred ChhhHHHHhhhcCCCCCCchhHHHHHhhhhcccceeecccccHHHHhhchH-HHHHHHHHHhhhcccceeeEEEeccccc
Q 010828 73 DRDSLLKYAKLIAPKDQNSIHVREIVKGIIEGETRVLAASMTMEEVFKGTK-EFKQEVFEKVQLELNQFGLLIYNANIKQ 151 (499)
Q Consensus 73 d~~~i~~aa~~~~~~~~~~~~i~~~~~~~leg~lR~iig~mtleei~~~R~-~f~~~V~~~~~~dl~~~Gl~I~sv~I~d 151 (499)
||..++ ..+. .....+...+.+.||+++|.|++++++++|. .|+..+.+.++..+++||+.|.+++|++
T Consensus 99 d~~~~~---~~v~-------~~~~~l~~~~~~~lR~vig~~~~~e~~~~~~~~i~~~i~~~l~~~~~~~Gi~V~~V~i~~ 168 (291)
T COG0330 99 DPQKAV---YNVE-------NAEAALRQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADPWGIKVVDVEIKD 168 (291)
T ss_pred CHHHHH---HhcC-------CHHHHHHHHHHHHHHHHHccccHHHHhhCchHHHHHHHHHHHHHhhhhcCcEEEEEEEee
Confidence 887332 2332 2555666666899999999999999999999 9999999999999999999999999999
Q ss_pred ccccCCcchhcccchhhHHHHhhhhchhHHHhhhcccccchhc
Q 010828 152 LVDVPGHEYFSYLGQKTQMEAANQAKVDVAEARMKGEVGAKLR 194 (499)
Q Consensus 152 I~d~~g~~y~~alg~~~~A~~~~~A~i~~Aea~r~~~i~~aea 194 (499)
+++|.. +..+|..+..+++.+++.+.+|++++.+.+..+++
T Consensus 169 i~~p~e--v~~a~~~~~~Aer~~ra~i~~Ae~~~~~~~~~a~g 209 (291)
T COG0330 169 IDPPEE--VQAAMEKQMAAERDKRAEILEAEGEAQAAILRAEG 209 (291)
T ss_pred cCCCHH--HHHHHHHHHHHHHHHHHHHHHhHhHHhhhhhhhhh
Confidence 999997 99999999999999999999999988777644443
No 18
>KOG2621 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=99.79 E-value=2.9e-20 Score=180.31 Aligned_cols=173 Identities=13% Similarity=0.156 Sum_probs=146.4
Q ss_pred CccccCccceeEeeecccc---ccccccccceecC-ceeeEeeeccccceeEee-eccccccccccceeeecCCCCCChh
Q 010828 1 MFRVASASQYLAITGTGIN---DVKLAKKSWVFPG-QYCTVFDITPVNYDFEVQ-AMSAEKLEFKLPAVFTIGPREDDRD 75 (499)
Q Consensus 1 ~y~~~~p~ealVVtg~g~~---rv~~gG~~fviPf-q~v~~isl~~~~i~i~~~-~~T~D~v~V~V~av~~v~v~~~d~~ 75 (499)
|.++++.-|-+||.++|+- ....||..|++|| |+..++|||+++++++++ .+|+|.+.|.|++++||++. ||.
T Consensus 54 clKiv~eYeR~VIfRLGRl~~~~~rGPGi~fvlPCIDt~~kVDLRt~sfnVPpqeIltkDsvtvsVdAvVyyri~--dpi 131 (288)
T KOG2621|consen 54 CLKIVQEYERAVIFRLGRLRTGGARGPGLFFLLPCIDTFRKVDLRTQSFNVPPQEILTKDSVTISVDAVVYYRIS--DPI 131 (288)
T ss_pred HHHhhHHHhhhhheeeeeccccCCCCCCeEEEecccceeeeeeeeEEeecCCHHHHhcccceEEEeceEEEEEec--CHH
Confidence 3578899999999999983 3446788999999 999999999998888888 89999999999999999996 885
Q ss_pred hHHHHhhhcCCCCCCchhHHHHHhhhhcccceeecccccHHHHhhchHHHHHHHHHHhhhcccceeeEEEeccccccccc
Q 010828 76 SLLKYAKLIAPKDQNSIHVREIVKGIIEGETRVLAASMTMEEVFKGTKEFKQEVFEKVQLELNQFGLLIYNANIKQLVDV 155 (499)
Q Consensus 76 ~i~~aa~~~~~~~~~~~~i~~~~~~~leg~lR~iig~mtleei~~~R~~f~~~V~~~~~~dl~~~Gl~I~sv~I~dI~d~ 155 (499)
.-+ -+..+ -....+-++ .+.||.++|+.+|.||+++|+.|+.+++..+++....||++|.+|+|+||+.|
T Consensus 132 ~sv---~~V~D---a~~sTr~lA----qttLrn~lgtk~L~eils~r~~is~~~~~~Ld~~T~~WGvkVeRVEikDvrlp 201 (288)
T KOG2621|consen 132 IAV---NNVGD---ADNATRLLA----QTTLRNYLGTKTLSEILSSREVIAQEAQKALDEATEPWGVKVERVEIKDVRLP 201 (288)
T ss_pred HHH---HhccC---HHHHHHHHH----HHHHHHHHccCcHHHHHHhHHHHHHHHHHHhhhcccccceEEEEEEEeeeech
Confidence 221 12321 123444444 77899999999999999999999999999999999999999999999999999
Q ss_pred CCcchhcccchhhHHHHhhhhchhHHHhhhcc
Q 010828 156 PGHEYFSYLGQKTQMEAANQAKVDVAEARMKG 187 (499)
Q Consensus 156 ~g~~y~~alg~~~~A~~~~~A~i~~Aea~r~~ 187 (499)
.. ...+|.....|.++.+|++--||+++.+
T Consensus 202 ~q--lqramaaeAeA~reA~Akviaaege~~a 231 (288)
T KOG2621|consen 202 AQ--LQRAMAAEAEATREARAKVIAAEGEKKA 231 (288)
T ss_pred Hh--hhhhhhchhhhhhhhhhhHHHHHhhhHH
Confidence 97 8999988888888888888888877654
No 19
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.
Probab=99.79 E-value=7.2e-20 Score=163.15 Aligned_cols=124 Identities=24% Similarity=0.467 Sum_probs=109.9
Q ss_pred eeeccccceeEee-eccccccccccceeeecCCCCCChhhHH-HHhhhcCCCCCCchhHHHHHhhhhcccceeecccccH
Q 010828 38 FDITPVNYDFEVQ-AMSAEKLEFKLPAVFTIGPREDDRDSLL-KYAKLIAPKDQNSIHVREIVKGIIEGETRVLAASMTM 115 (499)
Q Consensus 38 isl~~~~i~i~~~-~~T~D~v~V~V~av~~v~v~~~d~~~i~-~aa~~~~~~~~~~~~i~~~~~~~leg~lR~iig~mtl 115 (499)
+||++++++++.+ ++|+|+++|.|+++++|+|. ||..++ .+..+|++ .+.+.+...+.+++.++||+++|+||+
T Consensus 2 ~~lr~~~~~~~~q~v~TkD~~~v~vd~~~~~rV~--d~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~lR~~ig~~tl 77 (128)
T cd03399 2 LSLTSMVLRVGSEAVITRDGVRVDVTAVFQVKVG--GTEEAIATAAERFLG--KSEEEIEELVKEVLEGHLRAVVGTMTV 77 (128)
T ss_pred ccccceeeeccccceecCCCcEEEEEEEEEEEeC--CCHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 6888888888777 89999999999999999996 655443 45567753 123678999999999999999999999
Q ss_pred HHHhhchHHHHHHHHHHhhhcccceeeEEEecccccccccCCcchhcccchh
Q 010828 116 EEVFKGTKEFKQEVFEKVQLELNQFGLLIYNANIKQLVDVPGHEYFSYLGQK 167 (499)
Q Consensus 116 eei~~~R~~f~~~V~~~~~~dl~~~Gl~I~sv~I~dI~d~~g~~y~~alg~~ 167 (499)
++++++|+.|.+.|.+.+..+|.+|||+|.+++|++|+++++ |++++|.+
T Consensus 78 ~el~~~R~~i~~~i~~~v~~~~~~~Gi~i~~v~I~~i~~~~~--~~~~~~~~ 127 (128)
T cd03399 78 EEIYEDRDKFAEQVQEVVAPDLNKMGLELDSFTIKDITDTDG--YLNNLGDA 127 (128)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHCCCEEEEEeeEEecCCCC--CHHHcCCC
Confidence 999999999999999999999999999999999999999998 99999964
No 20
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.53 E-value=5.2e-15 Score=142.07 Aligned_cols=157 Identities=10% Similarity=0.093 Sum_probs=123.9
Q ss_pred ccccCccceeEeeeccc-ccccccccccee----cC-ce---------------eeEeeecccccee-------Eeeecc
Q 010828 2 FRVASASQYLAITGTGI-NDVKLAKKSWVF----PG-QY---------------CTVFDITPVNYDF-------EVQAMS 53 (499)
Q Consensus 2 y~~~~p~ealVVtg~g~-~rv~~gG~~fvi----Pf-q~---------------v~~isl~~~~i~i-------~~~~~T 53 (499)
..+|++++.+|+..+|+ .+++.+|+|+.| || +. +.+++.+.+.++. .....|
T Consensus 16 ~~iV~e~~~av~~~~Gk~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (207)
T cd03408 16 QLIVREGQAAVFVNEGKVADVFAPGGYYLTTNNLPVLAFLLSGDKGFSSPFKGEVYFFNTRVFTDLLWGTPAPVFGRDSE 95 (207)
T ss_pred EEEEcCCcEEEEEECCEEEEEecCCcceeeecCccHHHHhcChhhhCcCCceeEEEEEECEEEeccccCCCCCeeeeCCc
Confidence 46899999999999998 577877776665 43 22 4456666553321 122477
Q ss_pred ccccccccceeeecCCCCCChhhHHHHhhhcCCCC--CCchhHHHHHhhhhcccceeecccccHHHHhhc--hHHHHHHH
Q 010828 54 AEKLEFKLPAVFTIGPREDDRDSLLKYAKLIAPKD--QNSIHVREIVKGIIEGETRVLAASMTMEEVFKG--TKEFKQEV 129 (499)
Q Consensus 54 ~D~v~V~V~av~~v~v~~~d~~~i~~aa~~~~~~~--~~~~~i~~~~~~~leg~lR~iig~mtleei~~~--R~~f~~~V 129 (499)
.|+++|.++++++|+|. ||..++. ++.+.. .+.+.+...+...+.++||+++|++++++++.+ |+.|++.+
T Consensus 96 ~~~v~v~v~~~~~~kI~--Dp~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~lr~~i~~~~~~~l~~~~~r~~i~~~v 170 (207)
T cd03408 96 FGGVPLRAFGTYSLKVT--DPVLFVT---NIVGTRGLFTVEDLEKSLRALIVAALSSALSESGLAVMLLAANRDELSKAV 170 (207)
T ss_pred cceEEEEeeEEEEEEEc--CHHHHHH---HhcCCCcceeHHHHHHHHHHHHHHHHHHHHHhcCCeeEEhhhhHHHHHHHH
Confidence 89999999999999996 9986653 332211 122468889999999999999999999999988 99999999
Q ss_pred HHHhhhcccceeeEEEecccccccccCCcchhcccc
Q 010828 130 FEKVQLELNQFGLLIYNANIKQLVDVPGHEYFSYLG 165 (499)
Q Consensus 130 ~~~~~~dl~~~Gl~I~sv~I~dI~d~~g~~y~~alg 165 (499)
++.+...|.+|||+|+++.|++|++|.. +.++|.
T Consensus 171 ~~~l~~~~~~~Gi~i~~v~I~~i~~p~e--~~~ai~ 204 (207)
T cd03408 171 REALAPWFASFGLELVSVYIESISYPDE--VQKLID 204 (207)
T ss_pred HHHHHHHHHhcCcEEEEEEEEeecCCHH--HHHHHH
Confidence 9999999999999999999999999986 666654
No 21
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.44 E-value=8.4e-13 Score=131.44 Aligned_cols=140 Identities=30% Similarity=0.316 Sum_probs=65.7
Q ss_pred cchhHHHHHHHhHHHHHhhhhhhhhhhhhhhcccccchhhhHHHHHHHHHhhhhhhHHHHHHHhhhccchhhhhhhhh--
Q 010828 235 ENQREAEVAEANAELAKKKAGWAREAKVAEVESTKAVALRDAELQREVEKMNAATSMEKLRAEFVSKANVEYEAQVQE-- 312 (499)
Q Consensus 235 ~~~~e~~~A~a~a~~~~~~a~~~~~~~~a~a~a~~a~~~~~~e~q~ev~~~~~~~~~~~l~~e~~~~A~a~~~~~~~~-- 312 (499)
.++-++...++++++++..+.++-.+.+. +.+..++..+..++..|+.++...+.++|.+.++.||+++.+..++.
T Consensus 222 ~~dveV~~~~aEA~lAyelqaak~kq~i~--~e~~qV~vVEr~kqvAv~eqEiqr~~~el~A~vR~paeAe~~r~~klaE 299 (428)
T KOG2668|consen 222 ATDVEVNTNKAEADLAYELQAAKTKQAIR--EEEIQVAVVERTKQVAVREQEIQRRVEELNATVRTPAEAEVERETKLAE 299 (428)
T ss_pred hhhhHhhhhHHHHHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Confidence 33444444444444444444443333333 22222333444444444444444455556666666666666544433
Q ss_pred hhHHHhhhhhHHHHHHhhhHHHHHHHHhhhhHHHHHHhhhhchhhhhhhhhhhhhhhhhhhhhhHHHHHHHhhCC
Q 010828 313 ANWELYKKQKEAEAILYQKEKEAEAQKATAEAAFYARKQAADGQLYTKLKEAEGLVALGKAQGEYLKSISTSLGG 387 (499)
Q Consensus 313 AeA~~~~~~~~AeA~~~~~~~eAea~k~~AeA~~~~~~~~Aea~~~~~~AEAe~i~a~g~AeAe~~~~~aeA~~~ 387 (499)
|+.++|-.+++|||.+++.+.+|||-+.+|+| .|++.++..+ |++.+++++| .-++.+.++++.
T Consensus 300 Ank~~~~~qaqAEA~~irk~geAEA~~ieA~a-------kaeaeqm~~k--a~v~~~y~~a--a~l~~lLealp~ 363 (428)
T KOG2668|consen 300 ANKELYNKQAQAEAELIRKQGEAEAFAIEADA-------KAEAEQMAAK--AEVYQAYAQA--AYLRTLLEALPM 363 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-------hhHHHHHHHH--HHHHHHhhhh--HHHHHHHHHHHH
Confidence 33344555556666666555554444333333 3333333322 3334443333 556666666654
No 22
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.36 E-value=3.3e-13 Score=119.50 Aligned_cols=118 Identities=13% Similarity=0.146 Sum_probs=94.2
Q ss_pred eeeccccceeEeeeccccccccccceeeecCCCCCChhhHHHHhhhcCCCCCCchhHHHHHhhhhcccceeecccccHHH
Q 010828 38 FDITPVNYDFEVQAMSAEKLEFKLPAVFTIGPREDDRDSLLKYAKLIAPKDQNSIHVREIVKGIIEGETRVLAASMTMEE 117 (499)
Q Consensus 38 isl~~~~i~i~~~~~T~D~v~V~V~av~~v~v~~~d~~~i~~aa~~~~~~~~~~~~i~~~~~~~leg~lR~iig~mtlee 117 (499)
+|++.++...+...+|+|+++|.|+.+++|+|. ++..+..+ ..++. ......+...+.+++|+++|+|++++
T Consensus 3 ~~~r~~~~~~~~~v~T~D~~~v~vd~~v~y~V~--~~~~~~~~-~~~~~-----~~~~~~i~~~~~~~lR~~~~~~~~~e 74 (124)
T cd03400 3 YSTRLQEVDEKIDVLSKEGLSINADVSVQYRIN--PNKAAAVH-SKLGT-----DYARKIVRPTFRSLVREVTGRYTAEQ 74 (124)
T ss_pred ccceeeecccceEEECCCCCEEEEEEEEEEEEC--hhhHHHHH-HHhCc-----chhheeechhHHHHHHHHhcCCCHHH
Confidence 344555444455589999999999999999985 33322222 23421 24556777888999999999999999
Q ss_pred Hhh-chHHHHHHHHHHhhhcccceeeEEEecccccccccCCcchhcccc
Q 010828 118 VFK-GTKEFKQEVFEKVQLELNQFGLLIYNANIKQLVDVPGHEYFSYLG 165 (499)
Q Consensus 118 i~~-~R~~f~~~V~~~~~~dl~~~Gl~I~sv~I~dI~d~~g~~y~~alg 165 (499)
+++ +|..|.+.+++.+...|.+|||.|.+++|++|++|.. +.+++.
T Consensus 75 ~i~~~R~~i~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~P~~--v~~aI~ 121 (124)
T cd03400 75 IYSTKRKEIESAIKKELIEEFVGDGLILEEVLLRNIKLPDQ--IADAIE 121 (124)
T ss_pred HhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEEecccCCHH--HHHHHH
Confidence 996 7999999999999999999999999999999999986 877764
No 23
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins. This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i
Probab=99.05 E-value=7.5e-11 Score=101.99 Aligned_cols=104 Identities=17% Similarity=0.282 Sum_probs=88.7
Q ss_pred eccccccccccceeeecCCCCCChhhHHHHhhhcCCCCCCchhHHHHHhhhhcccceeecccccHHHHhhchHHHHHHHH
Q 010828 51 AMSAEKLEFKLPAVFTIGPREDDRDSLLKYAKLIAPKDQNSIHVREIVKGIIEGETRVLAASMTMEEVFKGTKEFKQEVF 130 (499)
Q Consensus 51 ~~T~D~v~V~V~av~~v~v~~~d~~~i~~aa~~~~~~~~~~~~i~~~~~~~leg~lR~iig~mtleei~~~R~~f~~~V~ 130 (499)
++|+|+++|.++++++|+|. ||..+. ..+.+. .. ...+...+.+.+|.++++++++++.++|..|.+.|+
T Consensus 16 ~~t~d~~~i~~~~~~~~~v~--~~~~~~---~~~~~~----~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~i~~~v~ 85 (121)
T cd02106 16 VLTKDNVPVRVDAVVQYRVV--DPVKAL---YNVRDP----ED-EEALRQLAQSALRSVIGKMTLDELLEDRDEIAAEVR 85 (121)
T ss_pred EEecCCCEEEEEEEEEEEEe--CHHHHH---HhcCCc----cH-HHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHHH
Confidence 78999999999999999995 665222 233221 11 677778889999999999999999999999999999
Q ss_pred HHhhhcccceeeEEEecccccccccCCcchhcccch
Q 010828 131 EKVQLELNQFGLLIYNANIKQLVDVPGHEYFSYLGQ 166 (499)
Q Consensus 131 ~~~~~dl~~~Gl~I~sv~I~dI~d~~g~~y~~alg~ 166 (499)
+.+..+|.+||++|.++.|+++++|+. |.++++.
T Consensus 86 ~~l~~~~~~~Gi~i~~v~i~~i~~~~~--~~~ai~~ 119 (121)
T cd02106 86 EALQEDLDKYGIEVVDVRIKDIDPPEE--VQEAMED 119 (121)
T ss_pred HHHHHHHHhcCCEEEEEEEEecCCCHH--HHHHHHh
Confidence 999999999999999999999999986 8887764
No 24
>KOG3090 consensus Prohibitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=3e-09 Score=100.70 Aligned_cols=186 Identities=11% Similarity=0.151 Sum_probs=136.4
Q ss_pred CccccCccceeEeeeccc--cccccccccceecC-ceeeEeeeccccceeEeeeccccccccccceeeecCCCCCChhhH
Q 010828 1 MFRVASASQYLAITGTGI--NDVKLAKKSWVFPG-QYCTVFDITPVNYDFEVQAMSAEKLEFKLPAVFTIGPREDDRDSL 77 (499)
Q Consensus 1 ~y~~~~p~ealVVtg~g~--~rv~~gG~~fviPf-q~v~~isl~~~~i~i~~~~~T~D~v~V~V~av~~v~v~~~d~~~i 77 (499)
||-+-+-..+.+.+++|+ .++...|.||.||| ++--..|+|.....+...+=|+|-.-|++..-+--+|+ ++.+
T Consensus 38 l~nVdgGHRAI~fnRi~Gik~~iy~EGtHf~iPwfe~pIiYDvRarP~~i~S~tGskDLQmVnI~lRVLsRP~---~~~L 114 (290)
T KOG3090|consen 38 LYNVDGGHRAIVFNRIGGIKDDIYPEGTHFRIPWFERPIIYDVRARPRLISSPTGSKDLQMVNIGLRVLSRPM---ADQL 114 (290)
T ss_pred eEeecCCceEEEEeccccchhccccCCceEeeeccccceeeeeccCcccccCCCCCcceeEEEeeeEEecCCC---hhhh
Confidence 355555566777788886 57778899999997 88777888877555555567788877777766666764 3333
Q ss_pred HHHhhhcCCCCCCchhHHHHHhhhhcccceeecccccHHHHhhchHHHHHHHHHHhhhcccceeeEEEecccccccccCC
Q 010828 78 LKYAKLIAPKDQNSIHVREIVKGIIEGETRVLAASMTMEEVFKGTKEFKQEVFEKVQLELNQFGLLIYNANIKQLVDVPG 157 (499)
Q Consensus 78 ~~aa~~~~~~~~~~~~i~~~~~~~leg~lR~iig~mtleei~~~R~~f~~~V~~~~~~dl~~~Gl~I~sv~I~dI~d~~g 157 (499)
-..-++++ .+.++.-+.+++ ...|++++.++.-..++..|+..+..|+..+-+...+|.|.++++.|+++++...
T Consensus 115 p~iyrtLG-~~y~ERVLPSIi----nEvLKaVVAqfNASqLITQRe~VSrliRk~L~eRA~~Fni~LDDVSiT~l~F~~e 189 (290)
T KOG3090|consen 115 PEIYRTLG-QNYDERVLPSII----NEVLKAVVAQFNASQLITQREQVSRLIRKILTERAADFNIALDDVSITELTFGKE 189 (290)
T ss_pred HHHHHHhc-cCcchhhhHHHH----HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccceEeecceeeeeecCHH
Confidence 32223443 233334445555 5557999999999999999999999999999999999999999999999999987
Q ss_pred cchhcccchhhHHHHhhhhc---hhHHHhhhcccccchhccc
Q 010828 158 HEYFSYLGQKTQMEAANQAK---VDVAEARMKGEVGAKLREG 196 (499)
Q Consensus 158 ~~y~~alg~~~~A~~~~~A~---i~~Aea~r~~~i~~aea~~ 196 (499)
|-.++..+++|.-+.+.. +.+|+.+|.+.|-.|++|+
T Consensus 190 --fTaAiEaKQvA~QeAqRA~F~VekA~qek~~~ivrAqGEa 229 (290)
T KOG3090|consen 190 --FTAAIEAKQVAAQEAQRAKFIVEKAEQEKQSAIVRAQGEA 229 (290)
T ss_pred --HHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhccch
Confidence 888888777665433322 4667777777776666654
No 25
>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=1.7e-08 Score=95.63 Aligned_cols=177 Identities=15% Similarity=0.143 Sum_probs=125.3
Q ss_pred ceeEeeeccc--cccccccccceecC-ceeeEeeeccccceeEeeeccccccccccceeeecCCCC-CChhhHHHHhhhc
Q 010828 9 QYLAITGTGI--NDVKLAKKSWVFPG-QYCTVFDITPVNYDFEVQAMSAEKLEFKLPAVFTIGPRE-DDRDSLLKYAKLI 84 (499)
Q Consensus 9 ealVVtg~g~--~rv~~gG~~fviPf-q~v~~isl~~~~i~i~~~~~T~D~v~V~V~av~~v~v~~-~d~~~i~~aa~~~ 84 (499)
.+.+.-+|.+ .-++..|.||.||+ |+-..+|.+...-.+.+..=|+|-..|+++-.+-+++.. .=|- |+ ..+
T Consensus 35 ravifdrf~gv~~~vvgegthflipw~qk~~i~d~rs~p~~v~~itGskdLQ~VniTlril~rp~~sqLP~-If---~~~ 110 (271)
T KOG3083|consen 35 RAVIFDRFRGVQDQVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVVSQLPC-IF---TSI 110 (271)
T ss_pred eeEEeecccchhhhcccCCceeeeeeccCcEEEeccCCCcccccccCchhhhcccceEEEEecccccccch-HH---Hhh
Confidence 3333344443 34556688999998 988888888776566666677887777777665555431 2232 32 233
Q ss_pred CCCCCCchhHHHHHhhhhcccceeecccccHHHHhhchHHHHHHHHHHhhhcccceeeEEEecccccccccCCcchhccc
Q 010828 85 APKDQNSIHVREIVKGIIEGETRVLAASMTMEEVFKGTKEFKQEVFEKVQLELNQFGLLIYNANIKQLVDVPGHEYFSYL 164 (499)
Q Consensus 85 ~~~~~~~~~i~~~~~~~leg~lR~iig~mtleei~~~R~~f~~~V~~~~~~dl~~~Gl~I~sv~I~dI~d~~g~~y~~al 164 (499)
|.+.+..-+..+. ..-|++++.+++-.|++..|+-++..|.+.+-.....|||.++++.|+.++.... +-++.
T Consensus 111 -G~dyDErVLpsI~----~eiLKsVVa~FdA~eliTqRe~vS~~v~~~lt~rA~~Fgl~LddvsiThltfGkE--Ft~Av 183 (271)
T KOG3083|consen 111 -GEDYDERVLPSIT----TEILKSVVARFDAGELITQRELVSRQVSNDLTERAATFGLILDDVSITHLTFGKE--FTEAV 183 (271)
T ss_pred -cccccccccccch----HHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHhhCeeechhhhhhhhhhHH--HHHHH
Confidence 2333333333333 3347999999999999999999999999999999999999999999999999876 88999
Q ss_pred chhhHHHHhhh-hc--hhHHHhhhcccccchhccc
Q 010828 165 GQKTQMEAANQ-AK--VDVAEARMKGEVGAKLREG 196 (499)
Q Consensus 165 g~~~~A~~~~~-A~--i~~Aea~r~~~i~~aea~~ 196 (499)
..++.|+-+.+ |+ +.+|+.+|.+.+-.||++.
T Consensus 184 E~KQVAQQEAErarFvVeKAeQqk~aavIsAEGds 218 (271)
T KOG3083|consen 184 EAKQVAQQEAERARFVVEKAEQQKKAAVISAEGDS 218 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhheeecccch
Confidence 88887765544 22 4667777777766666644
No 26
>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only]
Probab=97.97 E-value=7.3e-05 Score=71.58 Aligned_cols=148 Identities=11% Similarity=0.092 Sum_probs=93.2
Q ss_pred cccCccceeEeeeccc--cccccccccceecC-ceeeEeeecccccee-EeeeccccccccccceeeecCCCCCChhhHH
Q 010828 3 RVASASQYLAITGTGI--NDVKLAKKSWVFPG-QYCTVFDITPVNYDF-EVQAMSAEKLEFKLPAVFTIGPREDDRDSLL 78 (499)
Q Consensus 3 ~~~~p~ealVVtg~g~--~rv~~gG~~fviPf-q~v~~isl~~~~i~i-~~~~~T~D~v~V~V~av~~v~v~~~d~~~i~ 78 (499)
..++.+++.|-.+.|- ..+-.||.|+.+|| -++..+....++=.+ ++.+=|+.+|-+..|-.--|.. -.|+.++
T Consensus 24 HkieEGHvgvYyRGGALL~~~t~PG~Hl~lPFiTt~ksVQvTLQTDev~nvPCGTsGGVlIyfdrIEVVN~--L~~d~Vy 101 (322)
T KOG2962|consen 24 HKIEEGHVGVYYRGGALLTSITGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSGGVLIYFDRIEVVNF--LRPDAVY 101 (322)
T ss_pred hhcccCceEEEEecceeeeccCCCCcEEEeeeeeceeeeEEEeeccccccCCCCCCCcEEEEEehhhhhhh--hchhHHH
Confidence 3567788888888775 44556788999999 666555554443233 2336677776665542211111 1234444
Q ss_pred HHhhhcCCCCCCchhHHHHHhhhhcccceeecccccHHHHhh-chHHHHHHHHHHhhhcccce--eeEEEeccccccccc
Q 010828 79 KYAKLIAPKDQNSIHVREIVKGIIEGETRVLAASMTMEEVFK-GTKEFKQEVFEKVQLELNQF--GLLIYNANIKQLVDV 155 (499)
Q Consensus 79 ~aa~~~~~~~~~~~~i~~~~~~~leg~lR~iig~mtleei~~-~R~~f~~~V~~~~~~dl~~~--Gl~I~sv~I~dI~d~ 155 (499)
....++. .+.+.--|.+- +.-.+-...+.+||.+++= --+.+...+++.+..||..| ||.|.++.++.-..|
T Consensus 102 div~NYt-vdYD~~lIfnK----iHHE~NQFCS~HtLQeVYIdlFDqIDE~lK~ALQ~Dl~~mAPGl~iqaVRVTKPkIP 176 (322)
T KOG2962|consen 102 DIVKNYT-VDYDKTLIFNK----IHHELNQFCSVHTLQEVYIDLFDQIDENLKDALQADLTRMAPGLEIQAVRVTKPKIP 176 (322)
T ss_pred HHHHHcc-cCCcchhhhhH----HHHHHHhHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEEEecCCCCh
Confidence 4444443 12222223333 3566777888899999865 47888899999999998776 899999988765555
Q ss_pred CC
Q 010828 156 PG 157 (499)
Q Consensus 156 ~g 157 (499)
..
T Consensus 177 Ea 178 (322)
T KOG2962|consen 177 EA 178 (322)
T ss_pred HH
Confidence 53
No 27
>PF13421 Band_7_1: SPFH domain-Band 7 family
Probab=97.64 E-value=8.8e-05 Score=71.90 Aligned_cols=154 Identities=10% Similarity=0.086 Sum_probs=106.1
Q ss_pred ccCccceeEeeecccc-cccccc-------------------ccceecC-ceeeEeeecccc-ceeEee--e----cccc
Q 010828 4 VASASQYLAITGTGIN-DVKLAK-------------------KSWVFPG-QYCTVFDITPVN-YDFEVQ--A----MSAE 55 (499)
Q Consensus 4 ~~~p~ealVVtg~g~~-rv~~gG-------------------~~fviPf-q~v~~isl~~~~-i~i~~~--~----~T~D 55 (499)
+|++++.+|+..-|+. .+..|| -.|.-|| .+|-+++++.+. +.+-.. . ..-.
T Consensus 18 iV~egQ~Avfv~~G~i~d~~~pG~y~l~T~n~P~l~~l~~~~~Gg~spf~~eVyFvn~~~~~~~kwGT~~pi~~~D~~~~ 97 (211)
T PF13421_consen 18 IVREGQCAVFVNDGKIADVFGPGRYTLDTDNIPILSTLKNWKFGGESPFKAEVYFVNTKEITNIKWGTPNPIPYRDPEYG 97 (211)
T ss_pred EECCCCEEEEEECCEEEEEecCceEEEecCCchHHHHHhhhccCCCCCceEEEEEEECeEecCCccCCCCCeeecCCCCC
Confidence 5788888887655541 111111 1334477 678888888653 333211 1 1111
Q ss_pred ccccccceeeecCCCCCChhhHHHHhhhcCCCC--CCchhHHHHHhhhhcccceeeccc--ccHHHHhhchHHHHHHHHH
Q 010828 56 KLEFKLPAVFTIGPREDDRDSLLKYAKLIAPKD--QNSIHVREIVKGIIEGETRVLAAS--MTMEEVFKGTKEFKQEVFE 131 (499)
Q Consensus 56 ~v~V~V~av~~v~v~~~d~~~i~~aa~~~~~~~--~~~~~i~~~~~~~leg~lR~iig~--mtleei~~~R~~f~~~V~~ 131 (499)
.|+|..-+.|.++|. ||..|++ ++.|.. -+.+++.+.++..+...+-.+++. +++.+|-..-..+++.+.+
T Consensus 98 ~v~lra~G~ys~rI~--Dp~~F~~---~~vg~~~~~~~~~i~~~l~~~i~~~i~~~l~~~~~~~~~i~a~~~eis~~~~~ 172 (211)
T PF13421_consen 98 PVRLRAFGTYSFRIV--DPVLFIR---NLVGTQSEFTTEEINEQLRSEIVQAIADALAESKISILDIPAHLDEISEALKE 172 (211)
T ss_pred cEEEEEEEEEEEEEe--CHHHHHH---hhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 456666788999995 9987764 333321 134677777777777777777775 7889999999999999999
Q ss_pred HhhhcccceeeEEEecccccccccCCcchhccc
Q 010828 132 KVQLELNQFGLLIYNANIKQLVDVPGHEYFSYL 164 (499)
Q Consensus 132 ~~~~dl~~~Gl~I~sv~I~dI~d~~g~~y~~al 164 (499)
.+..++..+||+|.++.|.+|+.|.. ..+.|
T Consensus 173 ~l~~~~~~~Gi~l~~f~I~~i~~pee--~~~~i 203 (211)
T PF13421_consen 173 KLNPEFERYGIELVDFGIESISFPEE--VQKAI 203 (211)
T ss_pred HHHHHHHhcCcEEEEEEEEeecCCHH--HHHHH
Confidence 99999999999999999999999975 44444
No 28
>PTZ00491 major vault protein; Provisional
Probab=97.50 E-value=0.01 Score=67.18 Aligned_cols=153 Identities=14% Similarity=0.150 Sum_probs=92.9
Q ss_pred cccCccceeEeee--ccccccccccccceecC-ceeeEeeeccc---------c--c------eeEe-eecccccccccc
Q 010828 3 RVASASQYLAITG--TGINDVKLAKKSWVFPG-QYCTVFDITPV---------N--Y------DFEV-QAMSAEKLEFKL 61 (499)
Q Consensus 3 ~~~~p~ealVVtg--~g~~rv~~gG~~fviPf-q~v~~isl~~~---------~--i------~i~~-~~~T~D~v~V~V 61 (499)
+.||.|.+.=|+. -++.||+.|.-.+.+-. +..+.+||+-= + + -.|. .+-|+|+.++.+
T Consensus 465 ~~vphn~avqvydyk~~~~Rvv~GP~~v~L~pdE~ftvlsLSgg~PK~~n~i~~l~l~lGPdf~tD~i~vET~DhArL~l 544 (850)
T PTZ00491 465 YKVPHNAAVQLYDYKTKKSRVVFGPDLVMLEPDEEFTVLSLSGGKPKVPNQIHSLHLFLGPDFMTDVIHVETSDHARLAL 544 (850)
T ss_pred EEcCCCcEEEEEEcccCceEEEECCceEEecCCCceEEEEecCCCCCCcchhhhhhhhhCCccceeEEEEEEcccceEEE
Confidence 3466666666644 33467777765444443 44555554311 0 1 1122 268999999999
Q ss_pred ceeeecCCC--CCChhhHHHHhhhcCCCCCCchhHHHHHhhhhcccceeecccccHHHHhhchHH-HHHHHHHHhhhc--
Q 010828 62 PAVFTIGPR--EDDRDSLLKYAKLIAPKDQNSIHVREIVKGIIEGETRVLAASMTMEEVFKGTKE-FKQEVFEKVQLE-- 136 (499)
Q Consensus 62 ~av~~v~v~--~~d~~~i~~aa~~~~~~~~~~~~i~~~~~~~leg~lR~iig~mtleei~~~R~~-f~~~V~~~~~~d-- 136 (499)
.-.|.|... ..||. .+..-|.. ++.+...- ..|.+.+|+.++++++++.+.+=.. +.+.|+...+..
T Consensus 545 ~LsYnW~F~v~~~d~~---~~~k~Fsv----~DFvGd~C-k~iaSrIR~aVA~~~Fd~FHknsa~iiR~aVFg~~~e~~~ 616 (850)
T PTZ00491 545 QLSYNWYFDVTDGNPE---DAQKCFSV----PDFVGDAC-KTIASRVRAAVASEPFDEFHKNSAKIIRQAVFGSNDETGE 616 (850)
T ss_pred EEEEEEEEecCCCChh---hHhheecc----CchHHHHH-HHHHHHHHHHHhcCCHHHHhccHHHHHHHHhccCcCCCCc
Confidence 888877753 22443 33344542 23444333 2337888999999999999876443 444555533322
Q ss_pred ------ccceeeEEEecccccccccCCcchhccc
Q 010828 137 ------LNQFGLLIYNANIKQLVDVPGHEYFSYL 164 (499)
Q Consensus 137 ------l~~~Gl~I~sv~I~dI~d~~g~~y~~al 164 (499)
+...||-|+++-|++|.+-+. ...++|
T Consensus 617 ~r~~l~F~~N~lvit~VDvqsvEpvD~-~tr~~L 649 (850)
T PTZ00491 617 VRDSLRFPANNLVITNVDVQSVEPVDE-RTRDSL 649 (850)
T ss_pred cccceEEccCCeEEEEEeeeeeeecCH-HHHHHH
Confidence 367899999999999998874 244444
No 29
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.15 E-value=0.0017 Score=70.33 Aligned_cols=46 Identities=35% Similarity=0.359 Sum_probs=39.1
Q ss_pred hHHHHHHHhHHHHHhhhhhhhhhhhhhhcccccchhhhHHHHHHHH
Q 010828 238 REAEVAEANAELAKKKAGWAREAKVAEVESTKAVALRDAELQREVE 283 (499)
Q Consensus 238 ~e~~~A~a~a~~~~~~a~~~~~~~~a~a~a~~a~~~~~~e~q~ev~ 283 (499)
.++..|..++......++.+++.+.+++.+++++++..+..+++|.
T Consensus 267 ~ki~~a~~e~e~~~~~ae~~~~a~~a~~~Aeq~~~~~~~~~e~ev~ 312 (548)
T COG2268 267 VKIILAETEAEVAAWKAETRREAEQAEILAEQAIQEEKAQAEQEVQ 312 (548)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456688888888888899999999999999999999888888887
No 30
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]
Probab=96.93 E-value=0.0011 Score=65.67 Aligned_cols=126 Identities=10% Similarity=0.093 Sum_probs=95.3
Q ss_pred ccceecC-ceeeEeeecccc-ceeE-eee------ccccccccccceeeecCCCCCChhhHHHHhhhcCCCCC---Cchh
Q 010828 26 KSWVFPG-QYCTVFDITPVN-YDFE-VQA------MSAEKLEFKLPAVFTIGPREDDRDSLLKYAKLIAPKDQ---NSIH 93 (499)
Q Consensus 26 ~~fviPf-q~v~~isl~~~~-i~i~-~~~------~T~D~v~V~V~av~~v~v~~~d~~~i~~aa~~~~~~~~---~~~~ 93 (499)
..|.-|| +.|-+++++.+. +.+- ++. .-.-.+++...++|.++|. ||-.++.. ..+ ++ +.++
T Consensus 86 fgf~sp~k~eVyfvntqe~~girwGT~qpin~~dn~~~g~l~lRa~Gtys~kvt--Dpi~fi~~---I~g-~~dvy~v~d 159 (345)
T COG4260 86 FGFESPFKQEVYFVNTQEIKGIRWGTPQPINYFDNFYNGELFLRAHGTYSIKVT--DPILFIQQ---IPG-NRDVYTVDD 159 (345)
T ss_pred ecCCCcccceEEEEecceecceecCCCCCeecccccccceeEEeecceEEEEec--CHHHHHHh---ccC-CCceEEHHH
Confidence 3566788 899999998776 5442 221 2233577777899999995 99766543 332 11 2467
Q ss_pred HHHHHhhhhcccceeecccccH--HHHhhchHHHHHHHHHHhhhcccceeeEEEecccccccccCC
Q 010828 94 VREIVKGIIEGETRVLAASMTM--EEVFKGTKEFKQEVFEKVQLELNQFGLLIYNANIKQLVDVPG 157 (499)
Q Consensus 94 i~~~~~~~leg~lR~iig~mtl--eei~~~R~~f~~~V~~~~~~dl~~~Gl~I~sv~I~dI~d~~g 157 (499)
|...+-.++.+.|-..|+++-. -.+-.+--.+++-+.+.++.++..+|+.|++|.|.+|+.|+.
T Consensus 160 i~~q~ls~~m~al~tai~q~G~~~~~ltan~~elsk~m~e~Ld~q~~q~Gm~v~sfqvaSisypde 225 (345)
T COG4260 160 INQQYLSEFMGALATAINQSGVRFSFLTANQMELSKYMAEVLDEQWTQYGMAVDSFQVASISYPDE 225 (345)
T ss_pred HHHHHHHHHHHHHHHHHHhcCceehhhhhhHHHHHHHHHHHHhHHHHhhCceEeeEEEEEecCcHH
Confidence 7777777888888888887644 456678889999999999999999999999999999999986
No 31
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=95.76 E-value=0.032 Score=55.77 Aligned_cols=52 Identities=12% Similarity=0.148 Sum_probs=35.0
Q ss_pred hchhhhhhhhhhhhhhhhhhhhhhHHHHHHHhhCCchHhhhHhhhcchhhHHHH
Q 010828 353 ADGQLYTKLKEAEGLVALGKAQGEYLKSISTSLGGDYRAVKDFLMIDRGVYQEM 406 (499)
Q Consensus 353 Aea~~~~~~AEAe~i~a~g~AeAe~~~~~aeA~~~~~~a~~~~~~i~~~~lp~i 406 (499)
|+.....++|+++...+.++++|+.++.++++++++...+..++.++. |++|
T Consensus 214 a~~~~~~A~a~~~~~~~~ae~~a~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 265 (266)
T cd03404 214 AARIIQEAEAYKEEVIAEAQGEAARFESLLAEYKKAPDVTRERLYLET--MEEV 265 (266)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHH--HHHh
Confidence 333444445556666677778888899999999987776665666653 5554
No 32
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=94.93 E-value=0.093 Score=54.08 Aligned_cols=38 Identities=16% Similarity=0.123 Sum_probs=24.4
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHhhCCchHhhhHhhhcc
Q 010828 362 KEAEGLVALGKAQGEYLKSISTSLGGDYRAVKDFLMID 399 (499)
Q Consensus 362 AEAe~i~a~g~AeAe~~~~~aeA~~~~~~a~~~~~~i~ 399 (499)
|++++...+++++|++.+.+++++.++...+..++.++
T Consensus 254 A~a~a~~~~Aegea~a~~~~~~a~~~~p~~~~~~~~le 291 (317)
T TIGR01932 254 AYRTARIIKGEGDAEAAKIYSDAYGKDPEFYSFWRSLE 291 (317)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 34444444455566788899999998877565444444
No 33
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=94.58 E-value=0.12 Score=50.79 Aligned_cols=35 Identities=14% Similarity=0.053 Sum_probs=24.2
Q ss_pred hhhhhhhhhhhhhhhhhhHHHHHHHhhCCchHhhh
Q 010828 359 TKLKEAEGLVALGKAQGEYLKSISTSLGGDYRAVK 393 (499)
Q Consensus 359 ~~~AEAe~i~a~g~AeAe~~~~~aeA~~~~~~a~~ 393 (499)
.++|+|++...+++++|++.+.+++++.++++.+.
T Consensus 196 ~Aea~a~a~~~~a~gea~a~~~~~~a~~~~p~~~~ 230 (242)
T cd03405 196 LAEAYREAQEIRGEGDAEAARIYAEAYGKDPEFYA 230 (242)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHcCCHHHHH
Confidence 33444555566666666788889999988777554
No 34
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=94.40 E-value=0.21 Score=49.69 Aligned_cols=53 Identities=8% Similarity=0.063 Sum_probs=31.8
Q ss_pred hhhhhhhhhhhhhHHHHHHHhhCCchHhhhHhhhcchhhHHHHHHhhHHHhhcCCCceeeeec
Q 010828 364 AEGLVALGKAQGEYLKSISTSLGGDYRAVKDFLMIDRGVYQEMARINAEAVRGLQPKLSIWTN 426 (499)
Q Consensus 364 Ae~i~a~g~AeAe~~~~~aeA~~~~~~a~~~~~~i~~~~lp~i~~~~a~p~~~i~~~i~i~~~ 426 (499)
++....+++++|++.+.+++|+.+....+..++.++ .+.+-+++. +++.++++
T Consensus 198 ~~~~~~~a~g~a~~~~~~~~ay~~~p~~~~~~~~le---------~~~~~~~~~-~~~~~~~~ 250 (261)
T TIGR01933 198 KERRINRAKGDVARFTKLLAEYKKAPDVTRERLYLE---------TMEKVLSNT-RKVLLDDK 250 (261)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhChHHHHHHHHHH---------HHHHHHccC-CeEEEECC
Confidence 444445556666888888899988776666444433 222344554 56666654
No 35
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=92.97 E-value=0.4 Score=49.79 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=21.1
Q ss_pred hhhhhhhhhhhhhhHHHHHHHhhCCchHhhh
Q 010828 363 EAEGLVALGKAQGEYLKSISTSLGGDYRAVK 393 (499)
Q Consensus 363 EAe~i~a~g~AeAe~~~~~aeA~~~~~~a~~ 393 (499)
++++...+|+++|++.+.+++++.+....+.
T Consensus 265 ~~~a~i~~aegeA~a~~~~~~a~~~~p~~~~ 295 (334)
T PRK11029 265 ERQGRIMRGEGDAEAAKLFADAFSQDPDFYA 295 (334)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCHHHHH
Confidence 3344445556666889999999988766444
No 36
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365. Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=91.63 E-value=0.49 Score=47.17 Aligned_cols=136 Identities=16% Similarity=0.229 Sum_probs=85.1
Q ss_pred cceecCceeeEeeeccccc------eeEee--------eccccccccccceeeecCCCCCChhhHHHHhhhcCCCCCCch
Q 010828 27 SWVFPGQYCTVFDITPVNY------DFEVQ--------AMSAEKLEFKLPAVFTIGPREDDRDSLLKYAKLIAPKDQNSI 92 (499)
Q Consensus 27 ~fviPfq~v~~isl~~~~i------~i~~~--------~~T~D~v~V~V~av~~v~v~~~d~~~i~~aa~~~~~~~~~~~ 92 (499)
.+-++|++..-+||--+++ +++|. .+.+|++.+.+.+-+++|- |-+ +..+| -..
T Consensus 96 ~I~L~f~rA~AIDLAGRdV~eAVq~SVnPkVI~~P~i~aVAkdGIql~~kArVTVRa---Ni~------rLVGG--AgE- 163 (316)
T PF12127_consen 96 NIDLDFERAAAIDLAGRDVLEAVQTSVNPKVIDTPTIAAVAKDGIQLKVKARVTVRA---NID------RLVGG--AGE- 163 (316)
T ss_pred CCCCCHHHHHhhcccCCcHHHHHhcccCCeeecCcchhhhhcCCeEEEEEEEEEEEe---cHH------HhccC--CCc-
Confidence 4445566655566554432 22222 4779999999999999995 343 22343 223
Q ss_pred hHHHHHhhhhcccceeecccccHHHHhhchHHHHHHHHHHhhhcccceeeEEEecccccccccCCcchhcccchhh-HHH
Q 010828 93 HVREIVKGIIEGETRVLAASMTMEEVFKGTKEFKQEVFEKVQLELNQFGLLIYNANIKQLVDVPGHEYFSYLGQKT-QME 171 (499)
Q Consensus 93 ~i~~~~~~~leg~lR~iig~mtleei~~~R~~f~~~V~~~~~~dl~~~Gl~I~sv~I~dI~d~~g~~y~~alg~~~-~A~ 171 (499)
..++..+-+|-+-.+=+.-+-.+++.+-+.+++.|.+. .--.+--++|.|+.|-||+-..+ +|.+. ..+
T Consensus 164 --eTIiARVGEgIVttiGSa~~hk~VLEnPd~ISk~VL~k--gLDagTAFeIlSIDIaDidVG~N------IGA~Lq~dQ 233 (316)
T PF12127_consen 164 --ETIIARVGEGIVTTIGSAESHKEVLENPDSISKTVLEK--GLDAGTAFEILSIDIADIDVGEN------IGAKLQTDQ 233 (316)
T ss_pred --HHHHHHHccceeeeeccchhHHHHhcCHHHHHHHHHhh--CCCcCceeEEEEeeeeccccchh------hchhhhHHH
Confidence 34444555888887777788899999999999988765 22234457888888888877654 55433 223
Q ss_pred HhhhhchhHHHhh
Q 010828 172 AANQAKVDVAEAR 184 (499)
Q Consensus 172 ~~~~A~i~~Aea~ 184 (499)
++.+-+|..|+++
T Consensus 234 AeADk~iAqAkAE 246 (316)
T PF12127_consen 234 AEADKRIAQAKAE 246 (316)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444444
No 37
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=88.69 E-value=3.3 Score=41.29 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=15.4
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHhhCC
Q 010828 362 KEAEGLVALGKAQGEYLKSISTSLGG 387 (499)
Q Consensus 362 AEAe~i~a~g~AeAe~~~~~aeA~~~ 387 (499)
++|++.+...+++++.+..+.++++.
T Consensus 190 g~a~a~~~~A~g~~~~~~~~~~~~~~ 215 (262)
T cd03407 190 GAAEQRQAIADGLRESILSLADAVPG 215 (262)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444444555555777788877743
No 38
>PRK13665 hypothetical protein; Provisional
Probab=86.89 E-value=1.6 Score=43.49 Aligned_cols=115 Identities=17% Similarity=0.225 Sum_probs=74.3
Q ss_pred ccceecCceeeEeeeccccc------eeEee--------eccccccccccceeeecCCCCCChhhHHHHhhhcCCCCCCc
Q 010828 26 KSWVFPGQYCTVFDITPVNY------DFEVQ--------AMSAEKLEFKLPAVFTIGPREDDRDSLLKYAKLIAPKDQNS 91 (499)
Q Consensus 26 ~~fviPfq~v~~isl~~~~i------~i~~~--------~~T~D~v~V~V~av~~v~v~~~d~~~i~~aa~~~~~~~~~~ 91 (499)
..+-++|++..-+||--+.+ +++|. .+.+|++.+.+.+-++||- +-+ +..+|- ..
T Consensus 100 A~I~L~f~rA~AIDLAGRdVleAVq~SVnPkVI~~P~i~aVAkdGIql~~kARVTVRa---Ni~------rLVGGA--gE 168 (316)
T PRK13665 100 ANIDLDFERAAAIDLAGRDVLEAVQMSVNPKVIETPFIAAVAKDGIEVKAKARVTVRA---NID------RLVGGA--GE 168 (316)
T ss_pred cCCCCCHHHHHHhcccCccHHHHHhcccCCeeecCCcchhhcccCeEEEEEEEEEeeh---hHH------HHhCCC--cc
Confidence 34556676655555544332 22222 4779999999999999984 333 223331 22
Q ss_pred hhHHHHHhhhhcccceeecccccHHHHhhchHHHHHHHHHHhhhcc-cceeeEEEecccccccccCC
Q 010828 92 IHVREIVKGIIEGETRVLAASMTMEEVFKGTKEFKQEVFEKVQLEL-NQFGLLIYNANIKQLVDVPG 157 (499)
Q Consensus 92 ~~i~~~~~~~leg~lR~iig~mtleei~~~R~~f~~~V~~~~~~dl-~~~Gl~I~sv~I~dI~d~~g 157 (499)
+.++-.+-+|-+.++-+.-+-.+++.+-+.+++.|.+. -| .+--++|.|+.|-||+-..+
T Consensus 169 ---eTIiARVGEgIVttIGSa~~hk~VLEnPd~ISk~VL~k---GLDagTAFeIlSIDIADvdVG~N 229 (316)
T PRK13665 169 ---ETIIARVGEGIVSTIGSSESHKEVLENPDSISKTVLSK---GLDAGTAFEILSIDIADVDVGKN 229 (316)
T ss_pred ---eeeEeeecCceeecccCcchHHHHhcCHHHHHHHHHhc---cCCcCceeEEEEEeeeccccchh
Confidence 23444455787887777788889999999999777542 23 24456888888888876654
No 39
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=86.87 E-value=3.3 Score=44.37 Aligned_cols=41 Identities=7% Similarity=0.113 Sum_probs=23.6
Q ss_pred hhHHHHHHHhhCCchHhhhHhhhcchhhHHHHHHhhHHHhhcCCCceeeeec
Q 010828 375 GEYLKSISTSLGGDYRAVKDFLMIDRGVYQEMARINAEAVRGLQPKLSIWTN 426 (499)
Q Consensus 375 Ae~~~~~aeA~~~~~~a~~~~~~i~~~~lp~i~~~~a~p~~~i~~~i~i~~~ 426 (499)
|+...++..+|.+..+-..+.|.|+. |. +-|.+. +|| |+|.
T Consensus 305 a~rF~~i~~~Y~kaP~vtr~RlYlet--me-------~vl~~~-~kv-ivd~ 345 (419)
T PRK10930 305 VARFAKLLPEYKAAPEITRERLYIET--ME-------KVLGHT-RKV-LVND 345 (419)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHH--HH-------HHHccC-CEE-EEeC
Confidence 35555666688777765554444442 33 345566 675 6665
No 40
>PTZ00121 MAEBL; Provisional
Probab=80.87 E-value=3.4 Score=49.63 Aligned_cols=15 Identities=13% Similarity=0.018 Sum_probs=7.1
Q ss_pred cccCccceeEeeecc
Q 010828 3 RVASASQYLAITGTG 17 (499)
Q Consensus 3 ~~~~p~ealVVtg~g 17 (499)
.+|||..-|=-+.||
T Consensus 908 tKCPPR~PLkn~kFG 922 (2084)
T PTZ00121 908 EKCPPRFPLKSKSFG 922 (2084)
T ss_pred ccCCCCCCCCCCcee
Confidence 357775444333333
No 41
>PTZ00491 major vault protein; Provisional
Probab=70.94 E-value=39 Score=39.23 Aligned_cols=8 Identities=63% Similarity=0.650 Sum_probs=3.0
Q ss_pred HhhhcChh
Q 010828 448 IYRALPPL 455 (499)
Q Consensus 448 ~~~~~~~~ 455 (499)
|...-|-+
T Consensus 805 iA~agpe~ 812 (850)
T PTZ00491 805 IARAGPEL 812 (850)
T ss_pred HHHhCcHh
Confidence 33333333
No 42
>PTZ00121 MAEBL; Provisional
Probab=69.65 E-value=28 Score=42.50 Aligned_cols=11 Identities=9% Similarity=0.087 Sum_probs=4.9
Q ss_pred hhcccchhhHH
Q 010828 160 YFSYLGQKTQM 170 (499)
Q Consensus 160 y~~alg~~~~A 170 (499)
|-++.|+-..+
T Consensus 1093 ~~~~~~~~e~~ 1103 (2084)
T PTZ00121 1093 TEEAFGKAEEA 1103 (2084)
T ss_pred hHHHhhhHHHh
Confidence 44445544333
No 43
>PF11978 MVP_shoulder: Shoulder domain; InterPro: IPR021870 This domain is found in the Major Vault Protein and has been called the shoulder domain []. This family includes two bacterial proteins A6FXE2 from SWISSPROT and A1ZGE7 from SWISSPROT. This suggests that some bacteria may possess vault particles. ; PDB: 2ZUO_G 2QZV_B 2ZV5_c 2ZV4_Y.
Probab=69.28 E-value=7.4 Score=34.11 Aligned_cols=99 Identities=17% Similarity=0.187 Sum_probs=62.6
Q ss_pred eccccccccccceeeecCCCCCChhhHHHHhhhcCCCCCCchhHHHHHhhhhcccceeecccccHHHHhhchHHHHHHHH
Q 010828 51 AMSAEKLEFKLPAVFTIGPREDDRDSLLKYAKLIAPKDQNSIHVREIVKGIIEGETRVLAASMTMEEVFKGTKEFKQEVF 130 (499)
Q Consensus 51 ~~T~D~v~V~V~av~~v~v~~~d~~~i~~aa~~~~~~~~~~~~i~~~~~~~leg~lR~iig~mtleei~~~R~~f~~~V~ 130 (499)
+-|+|.-++.+.-.|.|... .|+.....+..-|. -++.+...- ..|.+.+|..+.+.+.++.+.+=..+.....
T Consensus 11 VET~DhArL~L~LsYnw~F~-v~~~~~~~~~k~F~----VpDFVGd~C-k~iaSRIR~aVa~~~Fd~FHknSa~iiR~aV 84 (118)
T PF11978_consen 11 VETADHARLQLQLSYNWHFD-VDRKDPEDAAKLFS----VPDFVGDAC-KAIASRIRGAVASVTFDDFHKNSARIIRQAV 84 (118)
T ss_dssp EE-TT-EEEEEEEEEEEEE---TTTHHHHHHHTTS----STTHHHHHH-HHHHHHHHHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred EeecccceeeEEEEEEEEEe-cCCCChhHHHHhcC----CcchHHHHH-HHHHHHHHHHHhcCcHHHHcccHHHHHHHHh
Confidence 67899999999888888755 24444444555563 134444444 3447888999999999999886555443322
Q ss_pred HHhhh--------cccceeeEEEeccccccccc
Q 010828 131 EKVQL--------ELNQFGLLIYNANIKQLVDV 155 (499)
Q Consensus 131 ~~~~~--------dl~~~Gl~I~sv~I~dI~d~ 155 (499)
=..++ -+...||-|+++-|++|.+-
T Consensus 85 Fg~~~~~~~r~~~~F~~N~LvIt~vDvqsvEpv 117 (118)
T PF11978_consen 85 FGFDENGEVRDGLRFPANNLVITSVDVQSVEPV 117 (118)
T ss_dssp STS---E--SS-EEETTTTEEEEEEEEEEEEES
T ss_pred cCCCCCCCccceeEEcCCCeEEEEEeeeEeccC
Confidence 11111 24578899999999988763
No 44
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=66.70 E-value=30 Score=34.68 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=18.3
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHhhC
Q 010828 362 KEAEGLVALGKAQGEYLKSISTSLG 386 (499)
Q Consensus 362 AEAe~i~a~g~AeAe~~~~~aeA~~ 386 (499)
.||++|.+...+-|.++.+++..|.
T Consensus 215 Gea~ail~~A~a~a~~~a~~~~~l~ 239 (301)
T KOG2620|consen 215 GEAEAILAFADAVAGTSAKLVMDLK 239 (301)
T ss_pred hHHHHHHHHhhcccchHHHHHHHHH
Confidence 4566677777777777888877775
No 45
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=55.10 E-value=24 Score=35.79 Aligned_cols=7 Identities=43% Similarity=0.999 Sum_probs=2.6
Q ss_pred hhHHHHH
Q 010828 342 AEAAFYA 348 (499)
Q Consensus 342 AeA~~~~ 348 (499)
|||.+|.
T Consensus 240 ~~~~~~~ 246 (280)
T cd03406 240 ADAEYYT 246 (280)
T ss_pred cCHHHHH
Confidence 3333333
No 46
>PRK13665 hypothetical protein; Provisional
Probab=54.76 E-value=21 Score=35.84 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=16.8
Q ss_pred hhhhhhHHHHHHHhhCC-chHhhh
Q 010828 371 GKAQGEYLKSISTSLGG-DYRAVK 393 (499)
Q Consensus 371 g~AeAe~~~~~aeA~~~-~~~a~~ 393 (499)
-+|||+.=.++++||.. +-..|-
T Consensus 276 VeAeaeVP~Ama~A~r~G~lGvmD 299 (316)
T PRK13665 276 VEAEAEVPLAMAEALRSGNLGVMD 299 (316)
T ss_pred hhhhhhchHHHHHHHHcCCCchhh
Confidence 56888889999999976 444343
No 47
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365. Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=49.34 E-value=23 Score=35.63 Aligned_cols=17 Identities=12% Similarity=0.153 Sum_probs=14.4
Q ss_pred hhhhhhHHHHHHHhhCC
Q 010828 371 GKAQGEYLKSISTSLGG 387 (499)
Q Consensus 371 g~AeAe~~~~~aeA~~~ 387 (499)
-+|||+.=.++++||..
T Consensus 271 VeAeaevP~A~aeAfr~ 287 (316)
T PF12127_consen 271 VEAEAEVPLAMAEAFRS 287 (316)
T ss_pred eehhhhchHHHHHHHHc
Confidence 46888889999999976
No 48
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=44.37 E-value=1.6e+02 Score=29.47 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=9.7
Q ss_pred hhhhhhhHHHHHHHhhCCc
Q 010828 370 LGKAQGEYLKSISTSLGGD 388 (499)
Q Consensus 370 ~g~AeAe~~~~~aeA~~~~ 388 (499)
.+.|++++.+....++...
T Consensus 227 ~~~a~~~~~~~~~~~~~~~ 245 (291)
T COG0330 227 IARAEADAAKIIAAALREA 245 (291)
T ss_pred HHhhccHHHHHHHhhcccc
Confidence 3344444455556666553
No 49
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=34.27 E-value=2.7e+02 Score=26.16 Aligned_cols=11 Identities=18% Similarity=0.211 Sum_probs=4.8
Q ss_pred HHHHHhhHHHh
Q 010828 404 QEMARINAEAV 414 (499)
Q Consensus 404 p~i~~~~a~p~ 414 (499)
.+|+..+...|
T Consensus 152 ~~lA~~i~~kL 162 (181)
T PRK13454 152 KDTAEALVAAL 162 (181)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 50
>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only]
Probab=31.99 E-value=1.9e+02 Score=28.59 Aligned_cols=9 Identities=0% Similarity=0.039 Sum_probs=4.3
Q ss_pred cccccccce
Q 010828 55 EKLEFKLPA 63 (499)
Q Consensus 55 D~v~V~V~a 63 (499)
.++|--.++
T Consensus 72 ~nvPCGTsG 80 (322)
T KOG2962|consen 72 KNVPCGTSG 80 (322)
T ss_pred ccCCCCCCC
Confidence 355555443
No 51
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=31.16 E-value=3.4e+02 Score=23.56 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=11.6
Q ss_pred hhhhhhhhhhhhhhhhHHHHH
Q 010828 361 LKEAEGLVALGKAQGEYLKSI 381 (499)
Q Consensus 361 ~AEAe~i~a~g~AeAe~~~~~ 381 (499)
..+|+.|...|.+++..+...
T Consensus 68 e~ea~eI~~~ae~~~~~~~~k 88 (108)
T COG2811 68 EEEAEEILAEAEKEASAILSK 88 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666655555444
No 52
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=30.51 E-value=1.4e+02 Score=28.42 Aligned_cols=6 Identities=50% Similarity=0.495 Sum_probs=3.1
Q ss_pred Cceeee
Q 010828 419 PKLSIW 424 (499)
Q Consensus 419 ~~i~i~ 424 (499)
+++.|+
T Consensus 119 ~~~~I~ 124 (198)
T PRK01558 119 DKLEII 124 (198)
T ss_pred CCeeEE
Confidence 455555
No 53
>COG4864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.89 E-value=1.8e+02 Score=28.48 Aligned_cols=134 Identities=15% Similarity=0.173 Sum_probs=0.0
Q ss_pred eeeccccceeEee-eccccccccccceeeecCCCCCChhhHHHHhhhcCCCCCCchhHHHHHhhhhcccceeecccccHH
Q 010828 38 FDITPVNYDFEVQ-AMSAEKLEFKLPAVFTIGPREDDRDSLLKYAKLIAPKDQNSIHVREIVKGIIEGETRVLAASMTME 116 (499)
Q Consensus 38 isl~~~~i~i~~~-~~T~D~v~V~V~av~~v~v~~~d~~~i~~aa~~~~~~~~~~~~i~~~~~~~leg~lR~iig~mtle 116 (499)
+|.+|..+..+.- ....+++.|.+.+-.+++ .+-+ +..+| ..-...+..+-+|-+..+-++-.-.
T Consensus 124 msvnpkvietpfiagvam~gievkakaritvr---ani~------rlvgg-----ageetviarvgegivstigss~~h~ 189 (328)
T COG4864 124 MSVNPKVIETPFIAGVAMNGIEVKAKARITVR---ANIE------RLVGG-----AGEETVIARVGEGIVSTIGSSDEHT 189 (328)
T ss_pred ccCCcceecccchheeeccceEEEEEEEEEeh---hhHH------HHhCC-----CCchhhhhhhccceeeccCCCcchh
Q ss_pred HHhhchHHHHHHHHHHhhhcccceeeEEEecccccccccCCcchhcccchhhHHHHhhhhchhHHHhhhcccccch
Q 010828 117 EVFKGTKEFKQEVFEKVQLELNQFGLLIYNANIKQLVDVPGHEYFSYLGQKTQMEAANQAKVDVAEARMKGEVGAK 192 (499)
Q Consensus 117 ei~~~R~~f~~~V~~~~~~dl~~~Gl~I~sv~I~dI~d~~g~~y~~alg~~~~A~~~~~A~i~~Aea~r~~~i~~a 192 (499)
+++.+-+.+++.|.+.=-.+=..| +|.|+.|-|++...+ +-.-|. +.++..+-.|..|.++.....+.+
T Consensus 190 ~vlenpd~isktvl~kgld~gtaf--eilsidiadvdigkn--iga~lq---teqa~adk~iaqakaeerramava 258 (328)
T COG4864 190 KVLENPDSISKTVLEKGLDSGTAF--EILSIDIADVDIGKN--IGAKLQ---TEQAEADKNIAQAKAEERRAMAVA 258 (328)
T ss_pred hHhcCccHHHHHHHHccCCCCcee--EEEEeeeeccccccc--cccccc---hhhhhhhhHHHHHHHHHHHHHHHH
No 54
>COG1871 CheD Chemotaxis protein; stimulates methylation of MCP proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=23.73 E-value=52 Score=30.58 Aligned_cols=31 Identities=16% Similarity=0.358 Sum_probs=19.9
Q ss_pred ccccCccceeEeeeccc--------cccccccc-cceecC
Q 010828 2 FRVASASQYLAITGTGI--------NDVKLAKK-SWVFPG 32 (499)
Q Consensus 2 y~~~~p~ealVVtg~g~--------~rv~~gG~-~fviPf 32 (499)
|+++.....++.||+|. ...-.||. ||.+|.
T Consensus 17 ~~v~~~p~~i~ttgLGSCV~v~l~D~~~~vgGm~H~mLP~ 56 (164)
T COG1871 17 YKVTKDPDVIITTGLGSCVGVCLRDPVNGVGGMNHFMLPD 56 (164)
T ss_pred EEEecCCCEEEEecccceEEEEEEccccCccceeEEeccC
Confidence 34444446777788887 13335664 999996
No 55
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=21.40 E-value=6.2e+02 Score=22.95 Aligned_cols=11 Identities=9% Similarity=0.057 Sum_probs=5.1
Q ss_pred HHHHHHhhHHH
Q 010828 403 YQEMARINAEA 413 (499)
Q Consensus 403 lp~i~~~~a~p 413 (499)
.+.++..+|+-
T Consensus 142 v~~lA~~ia~k 152 (156)
T CHL00118 142 VDTLSDQIEEK 152 (156)
T ss_pred HHHHHHHHHHh
Confidence 34455544443
No 56
>PF06713 bPH_4: Bacterial PH domain; InterPro: IPR009589 This entry is represented by Bacteriophage SP-beta, YolF. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical proteins specific to Oceanobacillus and Bacillus species. Members of this family are typically around 130 residues in length. The function of this family is unknown.
Probab=20.33 E-value=1.5e+02 Score=23.56 Aligned_cols=64 Identities=16% Similarity=0.176 Sum_probs=33.2
Q ss_pred cccCccceeEeeeccccccccccccceecCceeeEeeeccccceeEeeeccccccccccc--eeeecCCCCCChhhHHH
Q 010828 3 RVASASQYLAITGTGINDVKLAKKSWVFPGQYCTVFDITPVNYDFEVQAMSAEKLEFKLP--AVFTIGPREDDRDSLLK 79 (499)
Q Consensus 3 ~~~~p~ealVVtg~g~~rv~~gG~~fviPfq~v~~isl~~~~i~i~~~~~T~D~v~V~V~--av~~v~v~~~d~~~i~~ 79 (499)
+++..+...|..||.+ +.||+..+..++-..- .+...+.+.|.+.+.-. -.+.+.|. |.+.|+.
T Consensus 3 Y~i~~~~L~I~~G~~~---------~~I~i~~I~~I~~~~~--~~~~~a~S~~rl~I~y~~~~~i~IsP~--~~~~FI~ 68 (74)
T PF06713_consen 3 YIIEDDYLIIKCGFFK---------KKIPIEDIRSIRPTKN--PLSSPALSLDRLEIYYGKYKSILISPK--DKEEFIA 68 (74)
T ss_pred EEEeCCEEEEEECCcc---------cEEEhHHccEEEecCC--ccccccccccEEEEEECCCCEEEEECC--CHHHHHH
Confidence 3345555566666544 4577754444433211 11123566777776654 23555553 7766654
Done!