Query 010829
Match_columns 499
No_of_seqs 171 out of 1186
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 05:02:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010829.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010829hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0201 SecY Preprotein transl 100.0 5E-100 1E-104 800.1 39.0 406 78-490 10-431 (436)
2 PRK12907 secY preprotein trans 100.0 1.9E-99 4E-104 800.7 42.1 411 78-490 5-430 (434)
3 PRK09204 secY preprotein trans 100.0 1.2E-98 3E-103 795.4 42.5 409 78-489 5-425 (426)
4 CHL00161 secY preprotein trans 100.0 7.4E-97 2E-101 780.4 42.2 408 81-490 5-416 (417)
5 TIGR00967 3a0501s007 preprotei 100.0 7E-93 1.5E-97 749.0 42.6 397 87-486 1-410 (410)
6 PRK12417 secY preprotein trans 100.0 2E-92 4.2E-97 742.4 39.9 388 80-489 6-401 (404)
7 TIGR02920 acc_sec_Y2 accessory 100.0 5.3E-87 1.1E-91 700.7 40.3 387 85-489 1-394 (395)
8 PRK08568 preprotein translocas 100.0 1.1E-86 2.4E-91 709.9 38.5 379 84-490 24-457 (462)
9 PTZ00219 Sec61 alpha subunit; 100.0 2.8E-80 6.2E-85 661.5 38.1 370 84-483 28-469 (474)
10 PF00344 SecY: SecY translocas 100.0 1E-74 2.2E-79 599.6 29.2 327 141-475 1-346 (346)
11 KOG1373 Transport protein Sec6 100.0 1.9E-58 4.1E-63 464.5 31.8 376 83-487 26-471 (476)
12 PF10559 Plug_translocon: Plug 90.7 0.14 3E-06 36.1 1.4 33 98-136 1-33 (35)
13 PF07330 DUF1467: Protein of u 61.0 17 0.00037 30.8 4.7 58 381-442 13-70 (85)
14 PF05697 Trigger_N: Bacterial 39.1 62 0.0013 29.3 5.2 31 404-435 37-67 (145)
15 PF04923 Ninjurin: Ninjurin ; 35.5 99 0.0021 27.1 5.6 44 148-192 45-89 (104)
16 PF10777 YlaC: Inner membrane 33.6 1.4E+02 0.0031 27.9 6.5 26 155-183 3-28 (155)
17 COG5454 Predicted secreted pro 29.4 2.6E+02 0.0057 23.6 6.8 63 381-447 13-75 (89)
18 PHA01632 hypothetical protein 21.7 66 0.0014 25.2 1.8 17 412-428 24-40 (64)
19 PF08006 DUF1700: Protein of u 20.1 2.1E+02 0.0046 26.9 5.4 32 393-425 52-83 (181)
No 1
>COG0201 SecY Preprotein translocase subunit SecY [Intracellular trafficking and secretion]
Probab=100.00 E-value=5.3e-100 Score=800.05 Aligned_cols=406 Identities=37% Similarity=0.655 Sum_probs=361.0
Q ss_pred hhhhhc-CCchhHHHHHHHHHHHHHhccccccCCcchhhhccccccchhHHHHHhhcCCCCcccceeecCchHHHHHHHH
Q 010829 78 FGDFFK-GPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIV 156 (499)
Q Consensus 78 ~~~~~k-~~l~~Kil~Tl~~l~iyrlG~~IPlPGId~~~~~~~~~~~~~l~~l~~fsGg~~~~~SLfsLGI~PyItAsII 156 (499)
+.+++| +++|||++||++++++||+|++||+||+|.++..+.+++.....++|+|+||+++|+|+|+|||+||||||||
T Consensus 10 ~~~~~~~~~l~kr~~fT~~~Livyrigs~IPvpGi~~~~~~~~~~~~~~~~~~n~~~GGal~~~SIfaLGI~PyITASII 89 (436)
T COG0201 10 LSPKFKVPELRKRILFTLGALIVYRIGSFIPVPGINPAALSDLFNSQRFLILFNMFSGGALSRGSIFALGIMPYITASII 89 (436)
T ss_pred hcchhccHHHHHHHHHHHHHHHHHHHhCcCcCCCCCHHHHHHHHHHhhhhHHHHHhcccccccchHHHHccHHHHHHHHH
Confidence 445666 7899999999999999999999999999999887766555555688999999999999999999999999999
Q ss_pred HHHHhhhchhhHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--cc---ccchhHHHHHHHHHHHHHHHH
Q 010829 157 FQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPY--VN---DFSTDWVLTSVTLLTLGSAFT 231 (499)
Q Consensus 157 ~QLL~~~~p~L~~l~k~ege~gr~k~~~~tr~ltl~ia~iQa~~~~~~~~~~--~~---~~~~~~~~~~vl~LvaGt~~l 231 (499)
||||+...|.++|++| |||+||||+|++|||+|+++|++||++++..+... .. +.+...+++++++|++|||++
T Consensus 90 ~QLL~~~~p~l~~l~k-~~e~gR~k~~~~tRyltlvla~iQa~~~~~~~~~~~~~~~~~~~~~~~~~l~il~L~~Gt~~l 168 (436)
T COG0201 90 MQLLTVGSPILKKLDK-EGEEGRRKIQQYTRYLTLVLAVIQALGVVLGGNNGGSPSDVGNGGIFFYLLIILQLTAGTMFL 168 (436)
T ss_pred HHHHHHHHHHHHHHHh-cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccchHHHHHHHHHHHHHHHHH
Confidence 9999877899999987 88999999999999999999999999999887421 11 223556788899999999999
Q ss_pred HHHHHhhhcccCCCchhHHHHHHHhhhhhHHHHHHHHHHhhc---CchHHHHHHHHHHHHHHHHHHhhccceEeeeeeec
Q 010829 232 TYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQD---GNYIGLATIIISFILLVLGIVYVQEAERKIPINYA 308 (499)
Q Consensus 232 ~WL~E~It~~GiGnG~SLiI~~~Ii~~lp~~i~~~~~~~~~~---~~~~~~li~~~~~liv~~~iV~l~~a~rrIPI~~~ 308 (499)
|||||+|||||+|||+||+|++||++++|+.+.+........ .+....++.++.++++++++||+|++||||||||+
T Consensus 169 mwLgE~Itk~GIGnGiSLiIfagI~~~lp~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~ii~~vvyve~~~r~IPI~y~ 248 (436)
T COG0201 169 MWLGEQITKRGIGNGISLIIFAGIVASLPSAIFGIIGALPTGALFLSILFLLLLVLLTLAIIFLVVYVEQARRRIPIQYA 248 (436)
T ss_pred HHHHHHHhhcCcccchHHHHHHHHHHHhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHhhheEEEeehhhh
Confidence 999999999999999999999999999999887754433221 12222345666678888999999999999999999
Q ss_pred ccccccCCCCCcccccceeeccCcchhHHHHHHhhhhHHHHHHhhch-------hHHHHHHHhcCCCCcchHHHHHHHHH
Q 010829 309 SRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGI-------AALKKAAVALNPGGSFYLPTNILLIA 381 (499)
Q Consensus 309 ~r~~~~~~~~~~~~ylPiKln~aGvmPiIfassll~lp~~i~~~~~~-------~~~~~~~~~l~p~~~~y~~~y~~Lii 381 (499)
||. .+.++++|+|+|+|||||||+||||+++++|.++++++++ .|...+..++++++++|..+|+++++
T Consensus 249 ~~~----~~~g~~s~lPlKln~agvIPvIfassll~~p~~i~~~l~~~~~~~~~~~~~~i~~~l~~~~~~y~~~y~~lii 324 (436)
T COG0201 249 KRQ----SYRGQSSYLPLKLNYAGVIPVIFASSLLLFPSTIAQFLGNGGLAYYLSPLTSISDALSPGSPVYIALYVVLII 324 (436)
T ss_pred hhh----hcCCcCceeeeEeeccCChHHHHHHHHHHHHHHHHHHhcCCCccccccchhhHHHhccCCcHHHHHHHHHHHH
Confidence 865 3447899999999999999999999999999999999862 25556777888999999999999999
Q ss_pred HHHHHHHHhccChHHHHHHHHHcCCccccccCChhHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHhcCcccccccccc
Q 010829 382 FFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGT 461 (499)
Q Consensus 382 ~Fs~f~s~i~~np~diAe~Lkk~G~~IpGiRpG~~T~~yL~kvi~r~t~~Gai~L~~ia~lP~ll~~~~~~~~~~~~gGT 461 (499)
+|+|||+++++||||+||||||+|.+|||+||||+|+|||+|+++|+|++||+|++++|++|++++...+.+. .+|||
T Consensus 325 ~Fs~Fy~~i~~np~~~A~~lkksG~~IPGiRpg~~te~yL~rvi~rlt~~Ga~~l~~iailp~l~~~~~~~~~--~~gGT 402 (436)
T COG0201 325 FFSYFYTEIQFNPEEIAENLKKSGGFIPGIRPGKDTEKYLNRVIPRLTFIGALFLGLIAILPELLGTAGGVPF--YFGGT 402 (436)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHcCCcCCCcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--cccCe
Confidence 9999999999999999999999999999999999999999999999999999999999999999998888773 38999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHccCCCee
Q 010829 462 SVLILVGCATDTARKVQAEIISQKYKNIE 490 (499)
Q Consensus 462 slLI~Vgv~~~~~~qi~~~~~~~~Y~~~~ 490 (499)
|+||+|++++|+++|+++|+.+++|++++
T Consensus 403 slLI~V~V~l~~~~qi~~~l~~~~Y~~~~ 431 (436)
T COG0201 403 SLLIVVGVALDTYEQIEAELLMEKYPGLR 431 (436)
T ss_pred eeeeehHHHHHHHHHHHHHHHHhhchhHH
Confidence 99999999999999999999999999985
No 2
>PRK12907 secY preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=1.9e-99 Score=800.69 Aligned_cols=411 Identities=33% Similarity=0.595 Sum_probs=353.5
Q ss_pred hhhhhc-CCchhHHHHHHHHHHHHHhccccccCCcchhhhccccccchhHHHHHhhcCCCCcccceeecCchHHHHHHHH
Q 010829 78 FGDFFK-GPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIV 156 (499)
Q Consensus 78 ~~~~~k-~~l~~Kil~Tl~~l~iyrlG~~IPlPGId~~~~~~~~~~~~~l~~l~~fsGg~~~~~SLfsLGI~PyItAsII 156 (499)
+.++++ +++|+|++||++++++||+|++||+||+|.++... .+++.+++++|+|+||+++|+|+|+|||+|||||||+
T Consensus 5 ~~~~~~~~~lr~ril~Tl~il~iyrlG~~IPiPGi~~~~~~~-~~~~~~~~~~~~fsGG~~~~~sifsLGI~PyItAsII 83 (434)
T PRK12907 5 ISNFMRVAEIRRKILFTLAMLIVFRIGTFIPVPHTNAEVLKV-QDQANVLGMLNVFGGGALQHFSIFAVGITPYITASII 83 (434)
T ss_pred HHhhhccHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHhh-hhhhhHHHHHHHHhccccccChHHHHccHHHHHHHHH
Confidence 345665 89999999999999999999999999999987652 2234589999999999999999999999999999999
Q ss_pred HHHHhh-hchhhHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----cccchhHHHHHHHHHHHHHHH
Q 010829 157 FQLLAQ-INPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYV-----NDFSTDWVLTSVTLLTLGSAF 230 (499)
Q Consensus 157 ~QLL~~-~~p~L~~l~k~ege~gr~k~~~~tr~ltl~ia~iQa~~~~~~~~~~~-----~~~~~~~~~~~vl~LvaGt~~ 230 (499)
||||+. .+|++++++| |||+||||+|++|||+|+++|++||++++..+.... .+.++..++.++++|++|+++
T Consensus 84 ~QLL~~~~~p~l~~l~k-ege~gr~k~~~~tR~ltl~la~iQs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~aGt~~ 162 (434)
T PRK12907 84 VQLLQMDVIPKFSEWAK-QGEMGRKKSAQFTRYFTIILAFIQAIGMSYGFNNIAGGQLITDQSWTTYLFIATVLTAGTAF 162 (434)
T ss_pred HHHHHhccCccHHHHhh-cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccCccHHHHHHHHHHHHHHHHH
Confidence 999964 7999999997 899999999999999999999999999887654211 112333456677999999999
Q ss_pred HHHHHHhhhcccCCCchhHHHHHHHhhhhhHHHHHHHHHHh-hcCc-----hHHHHHHHHHHHHHHHHHHhhccceEeee
Q 010829 231 TTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAF-QDGN-----YIGLATIIISFILLVLGIVYVQEAERKIP 304 (499)
Q Consensus 231 l~WL~E~It~~GiGnG~SLiI~~~Ii~~lp~~i~~~~~~~~-~~~~-----~~~~li~~~~~liv~~~iV~l~~a~rrIP 304 (499)
+|||||+|||||+|||+|++|++||++++|+.+.+.+.... ..+. ....++.+++++++++++||+|++|||||
T Consensus 163 l~WL~e~It~~GIGnGiSliI~~gIv~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~v~~~~rrIP 242 (434)
T PRK12907 163 LLWLGEQITANGVGNGISMLIFAGLVAAIPNVANQIYLQQFQNAGDQLFMHIIKMLLIGLVILAIVVGVIYIQQAVRKIP 242 (434)
T ss_pred HHHHHHHHhcCCcCcccHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhHHHHHHHHHHHHHHHHHHhheeeeeEEEE
Confidence 99999999999999999999999999999988866432111 1121 11112333345567788999999999999
Q ss_pred eeecccccccCCCCC-cccccceeeccCcchhHHHHHHhhhhHHHHHHhhchh-HHHHHHHhcCCCCcchHHHHHHHHHH
Q 010829 305 INYASRYTSRSGGLQ-RSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIA-ALKKAAVALNPGGSFYLPTNILLIAF 382 (499)
Q Consensus 305 I~~~~r~~~~~~~~~-~~~ylPiKln~aGvmPiIfassll~lp~~i~~~~~~~-~~~~~~~~l~p~~~~y~~~y~~Lii~ 382 (499)
+||+||..+++.+.+ +++|+|+|+|++||||+||||+++++|++++++++++ +.+.+..++++++++|..+|++++++
T Consensus 243 i~ya~r~~~~~~~~~~~~syiPlKvN~aGvmPiIFAssll~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~lii~ 322 (434)
T PRK12907 243 IQYAKAVSGNNQYQGAKNTHLPLKVNSAGVIPVIFASAFLMTPRTIAQLFPDSSVSKWLVANLDFAHPIGMTLYVGLIVA 322 (434)
T ss_pred EEEchhhccccccCCCcCceeeeeEcccCChHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHcCCCCcHHHHHHHHHHHH
Confidence 999998888766555 6789999999999999999999999999999987543 33445556788888899999999999
Q ss_pred HHHHHHHhccChHHHHHHHHHcCCccccccCChhHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHhcCcccccccccch
Q 010829 383 FNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTS 462 (499)
Q Consensus 383 Fs~f~s~i~~np~diAe~Lkk~G~~IpGiRpG~~T~~yL~kvi~r~t~~Gai~L~~ia~lP~ll~~~~~~~~~~~~gGTs 462 (499)
|+|||+++++||||+||||||+|++|||+||||+|+|||+|+++|+|++||++++++|++|++++...+.+....+||||
T Consensus 323 Fs~fyt~i~~nP~~iAenL~k~G~~IPGiRPGk~T~~yL~~~i~rlt~~Gai~L~~ia~lP~i~~~~~~~~~~~~~gGTs 402 (434)
T PRK12907 323 FTYFYAFIQVNPEQMAENLKKQNGYVPGIRPGKSTEQYVTKILYRLTFIGAIFLGAISILPLVFTKIATLPPSAQIGGTS 402 (434)
T ss_pred HHHHHHHHccCHHHHHHHHHHCCCcCCCcCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCcccccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999998777765333489999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHccCCCee
Q 010829 463 VLILVGCATDTARKVQAEIISQKYKNIE 490 (499)
Q Consensus 463 lLI~Vgv~~~~~~qi~~~~~~~~Y~~~~ 490 (499)
+||+|||++|++||+|+++.+++|+++.
T Consensus 403 lLI~VgV~ldt~~qi~s~l~~~~Y~~~~ 430 (434)
T PRK12907 403 LLIIVGVALETMKTLESQLVKRHYKGFI 430 (434)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999984
No 3
>PRK09204 secY preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=1.2e-98 Score=795.43 Aligned_cols=409 Identities=39% Similarity=0.698 Sum_probs=362.9
Q ss_pred hhhhhc-CCchhHHHHHHHHHHHHHhccccccCCcchhhhcccccc--chhHHHHHhhcCCCCcccceeecCchHHHHHH
Q 010829 78 FGDFFK-GPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQ--NSLLSTLDSFSGGGIGRLGICSLGIVPFINAQ 154 (499)
Q Consensus 78 ~~~~~k-~~l~~Kil~Tl~~l~iyrlG~~IPlPGId~~~~~~~~~~--~~~l~~l~~fsGg~~~~~SLfsLGI~PyItAs 154 (499)
+++.|| +++|+|++||++++++||+|++||+||+|.++..+..++ +++++++++++||+++|+|+|+|||+||||||
T Consensus 5 ~~~~~~~~~l~~ki~~Tl~~l~iyrlgs~IPlpGi~~~~~~~~~~~~~~~~~~~~~~~~Gga~~~~slf~LGI~PyItAs 84 (426)
T PRK09204 5 LKNAFKIKELRKRILFTLGALIVFRIGSYIPVPGIDPAALAQLFDQQSGGILGLFNLFSGGALSRFSIFALGIMPYITAS 84 (426)
T ss_pred HHhHhcchhHHHHHHHHHHHHHHHHHHccCCCCCCCHHHHHHHHhhccccHHHHHHHHcccchhcccHHHhCcHHHHHHH
Confidence 456776 899999999999999999999999999999887654332 37899999999999999999999999999999
Q ss_pred HHHHHHhhhchhhHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-------cccchhHHHHHHHHHHHH
Q 010829 155 IVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYV-------NDFSTDWVLTSVTLLTLG 227 (499)
Q Consensus 155 II~QLL~~~~p~L~~l~k~ege~gr~k~~~~tr~ltl~ia~iQa~~~~~~~~~~~-------~~~~~~~~~~~vl~LvaG 227 (499)
|+||||+.++|+++|++| |||+||||+|++|||+|+++|++||++++..+..+. .+++...+++++++|++|
T Consensus 85 Ii~QLL~~~ip~l~~l~k-ege~gr~k~~~~tr~ltl~~a~iQs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~L~~G 163 (426)
T PRK09204 85 IIMQLLTVVIPKLEELKK-EGEAGRRKINQYTRYLTVVLAFVQSIGIAAGLNSMSGGGGLVPIPPGFFFYLTIVITLTAG 163 (426)
T ss_pred HHHHHHHHHhhhHHHHhh-ccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCCccHHHHHHHHHHHHHH
Confidence 999999999999999997 899999999999999999999999999886553221 112344567888999999
Q ss_pred HHHHHHHHHhhhcccCCCchhHHHHHHHhhhhhHHHHHHHHHHhhc-CchHHHHHHHHHHHHHHHHHHhhccceEeeeee
Q 010829 228 SAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQD-GNYIGLATIIISFILLVLGIVYVQEAERKIPIN 306 (499)
Q Consensus 228 t~~l~WL~E~It~~GiGnG~SLiI~~~Ii~~lp~~i~~~~~~~~~~-~~~~~~li~~~~~liv~~~iV~l~~a~rrIPI~ 306 (499)
+++++||||+|||||+|||+|++|++||++++|+++.+.++....+ .+...+++.+++++++++++||+|++|||||+|
T Consensus 164 s~i~~wL~e~It~~GiGnGiSliI~~gI~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~rIPi~ 243 (426)
T PRK09204 164 TMFLMWLGEQITERGIGNGISLIIFAGIVAGLPSAIGQTFELARTGSLSILVFLLLIVLFLAVIAFVVFVEQAQRRIPVQ 243 (426)
T ss_pred HHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHheeeeeEEEEEEE
Confidence 9999999999999999999999999999999999988766433211 223333445566778889999999999999999
Q ss_pred ecccccccCCCCCcccccceeeccCcchhHHHHHHhhhhHHHHHHhhchh-HHHHHHHhcCCCCcchHHHHHHHHHHHHH
Q 010829 307 YASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIA-ALKKAAVALNPGGSFYLPTNILLIAFFNY 385 (499)
Q Consensus 307 ~~~r~~~~~~~~~~~~ylPiKln~aGvmPiIfassll~lp~~i~~~~~~~-~~~~~~~~l~p~~~~y~~~y~~Lii~Fs~ 385 (499)
|+||..+|+++.++++|+|+|+||+|+||+|||++++++|++++++.+++ |.+.+.++++|.+++|.++|++++++|+|
T Consensus 244 ~~~~~~~~~~~~~~~~yiPiKln~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~lii~Fs~ 323 (426)
T PRK09204 244 YAKRQVGRKMYGGQSSYLPLKVNMAGVIPVIFASSILLFPATIAQFFGSGSWLQWIANYLSPGSPLYILLYALLIIFFTF 323 (426)
T ss_pred ehhhhccccccCCCCeeeeeeecccCchHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 99887777766678999999999999999999999999999999986544 66667788999899999999999999999
Q ss_pred HHHHhccChHHHHHHHHHcCCccccccCChhHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHhcCcccccccccchhHH
Q 010829 386 YYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLI 465 (499)
Q Consensus 386 f~s~i~~np~diAe~Lkk~G~~IpGiRpG~~T~~yL~kvi~r~t~~Gai~L~~ia~lP~ll~~~~~~~~~~~~gGTslLI 465 (499)
||+++++||||+||||||||++|||+|||++|+|||+|+++|+|++||++++++|++|++++...+.+ + .++|||+||
T Consensus 324 fy~~i~~~p~~iAe~l~k~g~~IpGiRpG~~T~~yL~~~i~r~t~~Ga~~l~~ia~~p~~~~~~~~~~-~-~~ggTslLI 401 (426)
T PRK09204 324 FYTAIQFNPEEIAENLKKSGGFIPGIRPGEQTAEYLDKVLTRLTLVGAIYLAFIALLPEILQNALGVP-F-YFGGTSLLI 401 (426)
T ss_pred HHHHHhcCHHHHHHHHHHCCCcccCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCcc-c-ccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998776663 2 379999999
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCe
Q 010829 466 LVGCATDTARKVQAEIISQKYKNI 489 (499)
Q Consensus 466 ~Vgv~~~~~~qi~~~~~~~~Y~~~ 489 (499)
+||+++|++||+|+++.+++|+++
T Consensus 402 ~Vgv~l~~~~qi~~~~~~~~Y~~~ 425 (426)
T PRK09204 402 VVGVALDTMKQIESQLMSRQYEGF 425 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999986
No 4
>CHL00161 secY preprotein translocase subunit SecY; Validated
Probab=100.00 E-value=7.4e-97 Score=780.40 Aligned_cols=408 Identities=41% Similarity=0.713 Sum_probs=353.9
Q ss_pred hhcCCchhHHHHHHHHHHHHHhccccccCCcchhhhccccccchhHHHHHhhcCCCCcccceeecCchHHHHHHHHHHHH
Q 010829 81 FFKGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLL 160 (499)
Q Consensus 81 ~~k~~l~~Kil~Tl~~l~iyrlG~~IPlPGId~~~~~~~~~~~~~l~~l~~fsGg~~~~~SLfsLGI~PyItAsII~QLL 160 (499)
+.++++|+|++||++++++||+|+|||+||+|.++..+..+++++++++++|+||+++|+|+|+|||+|||||||+|||+
T Consensus 5 ~~~~~l~~ri~~Tl~~L~iy~lg~~IPlpGv~~~~~~~~~~~~~~~~~~~~~sgg~~~~~slf~LGI~PyItAsII~QLl 84 (417)
T CHL00161 5 KKKDELLNRLLFTLGLLLLIRLGTFIPVPGIDHTQLYPSLSNNPLLNLLNTFSGGGFFVIGLFALGILPYINASIIIQLL 84 (417)
T ss_pred ccCccHHHHHHHHHHHHHHHHHhccCCCCCcCHHHHHHhhccccHHHHHHHHcCCCcccCcHHHHCcHHHHHHHHHHHHH
Confidence 34589999999999999999999999999999987654444467999999999999999999999999999999999999
Q ss_pred hhhchhhHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010829 161 AQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISD 240 (499)
Q Consensus 161 ~~~~p~L~~l~k~ege~gr~k~~~~tr~ltl~ia~iQa~~~~~~~~~~~~~~~~~~~~~~vl~LvaGt~~l~WL~E~It~ 240 (499)
+.++|++++++|||||+||||+|++||++|+++|++||++++.++.....+.+..++++++++|++|+++++||||+|||
T Consensus 85 ~~~~p~l~~l~k~~g~~gr~k~~~~tr~ltl~la~iqa~~~~~~~~~~~~~~~~~~~~~~v~~L~~Gt~~~~wL~e~it~ 164 (417)
T CHL00161 85 TSIIPSLEKLQKEEGEAGRRKINQYTRYLTLGWAIIQSIGISFWLKPYLFNWNLLLALEIVLALTSGSMIVLWLSELITE 164 (417)
T ss_pred HHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 98899999999867999999999999999999999999999877643333334446778889999999999999999999
Q ss_pred ccCCCchhHHHHHHHhhhhhHHHHHHHHHHhhcC-chHHHHHHHHHHHHHHHHHHhhccceEeeeeeecccccccCCCCC
Q 010829 241 LKLGNGTSLLIFTSIISYLPASFGRTVAEAFQDG-NYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRSGGLQ 319 (499)
Q Consensus 241 ~GiGnG~SLiI~~~Ii~~lp~~i~~~~~~~~~~~-~~~~~li~~~~~liv~~~iV~l~~a~rrIPI~~~~r~~~~~~~~~ 319 (499)
||+|||+|++|++||++++|+.+.+.+... ++. .....+..++++++++++++++|++|||||++|+||.. +++..+
T Consensus 165 ~GiGnGiSliI~~~I~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vi~~vv~~~~~~rrIPi~~~~~~~-~~~~~~ 242 (417)
T CHL00161 165 KGLGNGSSLLIFFNIVSNLPKLLQSLLFSL-SANITILSILLLLFLFFITLIGIIFLQEAIRKIPLISAKQLG-KSSRLA 242 (417)
T ss_pred cCcCcchHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHHHHHHHHhhcceEEEEEEEhhhhc-cccccC
Confidence 999999999999999999998876544321 111 11222333445677788999999999999999997653 555567
Q ss_pred cccccceeeccCcchhHHHHHHhhhhHHHHHHhhchh-HHH--HHHHhcCCCCcchHHHHHHHHHHHHHHHHHhccChHH
Q 010829 320 RSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIA-ALK--KAAVALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDD 396 (499)
Q Consensus 320 ~~~ylPiKln~aGvmPiIfassll~lp~~i~~~~~~~-~~~--~~~~~l~p~~~~y~~~y~~Lii~Fs~f~s~i~~np~d 396 (499)
+++|+|+|+||+|+||+|||++++++|+++++++.+. +.+ ....+++++.++|.++|+++|++|+|||+++++||||
T Consensus 243 ~~~ylPiKln~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~y~~~y~~lii~Fs~f~~~i~~~p~~ 322 (417)
T CHL00161 243 SNSYLPLRLNQAGVMPIIFASALLVLPGYLTNILLNQFLLPLLSLFLQLASFKILYLVLYFVLILFFSYFYSTIVLNPKD 322 (417)
T ss_pred ccceeeeehhccCchHHHHHHHHHHHHHHHHHHhcccchhhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 7899999999999999999999999999999987543 222 2334466677889999999999999999999999999
Q ss_pred HHHHHHHcCCccccccCChhHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHhcCcccccccccchhHHHHHHHHHHHHH
Q 010829 397 VSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARK 476 (499)
Q Consensus 397 iAe~Lkk~G~~IpGiRpG~~T~~yL~kvi~r~t~~Gai~L~~ia~lP~ll~~~~~~~~~~~~gGTslLI~Vgv~~~~~~q 476 (499)
+||||||||++|||+||||+|+|||+|+++|++++||++++++|++|++++...+.+.+.++||||+||+||+++|++||
T Consensus 323 iA~~Lkk~g~~IpGvRpG~~T~~yL~~~i~~~t~~Ga~~l~~la~~p~l~~~~~~~~~~~~~ggtslLI~Vgv~~~~~~q 402 (417)
T CHL00161 323 ISENLQKMAVSIPGIRPGKATTKYLKKTLNRLTLLGALFLAFIALLPNLIESVLNLSVFKGLGTTSLLILVGVAIDTSRQ 402 (417)
T ss_pred HHHHHHHCCCcCCCcCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCcccccccchhhhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999877665434446899999999999999999
Q ss_pred HHHHHHHccCCCee
Q 010829 477 VQAEIISQKYKNIE 490 (499)
Q Consensus 477 i~~~~~~~~Y~~~~ 490 (499)
+|+++.+++|++++
T Consensus 403 i~a~~~~~~Y~~~~ 416 (417)
T CHL00161 403 IQTYLISNNYENMY 416 (417)
T ss_pred HHHHHHHHhhcccc
Confidence 99999999999874
No 5
>TIGR00967 3a0501s007 preprotein translocase, SecY subunit.
Probab=100.00 E-value=7e-93 Score=749.01 Aligned_cols=397 Identities=37% Similarity=0.636 Sum_probs=344.4
Q ss_pred hhHHHHHHHHHHHHHhccccccCCcchhhhccccccchhHHHHHhhcCCCCcccceeecCchHHHHHHHHHHHHhh-hch
Q 010829 87 PGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQ-INP 165 (499)
Q Consensus 87 ~~Kil~Tl~~l~iyrlG~~IPlPGId~~~~~~~~~~~~~l~~l~~fsGg~~~~~SLfsLGI~PyItAsII~QLL~~-~~p 165 (499)
|+|++||++++++||+|++||+||+|.++..+..+++++++++++++||+++|+|+|+|||+|||||||+||||+. +.|
T Consensus 1 ~~ki~~Tl~~l~iyrlg~~IPlpGi~~~~~~~~~~~~~~~~~~~~~sgga~~~~slf~LGI~PyItAsIi~QLL~~~~~~ 80 (410)
T TIGR00967 1 REKLLFTLGLLVLFRIGTFIPVPGIDASAFQQDIQQNGIFNLLNLFSGGALNQGSIFALGISPYITASIIIQLLTGDVPP 80 (410)
T ss_pred CchHHHHHHHHHHHHHHccCCCCCCCHHHHhhhhccccHHHHHHHHhccccccccHHHHccHHHHHHHHHHHHHHhccCh
Confidence 6899999999999999999999999999876655557789999999999999999999999999999999999975 567
Q ss_pred hhHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccccccccchhHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 010829 166 KLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQV-LYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLG 244 (499)
Q Consensus 166 ~L~~l~k~ege~gr~k~~~~tr~ltl~ia~iQa~~~~-~~~~~~~~~~~~~~~~~~vl~LvaGt~~l~WL~E~It~~GiG 244 (499)
.+++++| |||+||+|+|++||++|+++|++||++++ ...+....+++..++++++++|++|+++++||||+|||||+|
T Consensus 81 ~l~~~~~-~g~~gr~k~~~~tr~lt~~~a~iQs~~~~~~~~~~~~~~~~~~~~~~~v~~L~~Gs~~~~wL~e~it~~GiG 159 (410)
T TIGR00967 81 LLQLQKK-EGEIGRRKINQLTRYLTLILAFIQSLGIVMTGMYGYVGDPGAFFYLLIVIQLTTGSMIVMWLGEQITKYGIG 159 (410)
T ss_pred HHHHHhh-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 7777765 89999999999999999999999999998 444333344555567788899999999999999999999999
Q ss_pred CchhHHHHHHHhhhhhHHHHHHHHHHh-hcCch------HHHHHHHHHHHHHHHHHHhhccceEeeeeeecccccccCCC
Q 010829 245 NGTSLLIFTSIISYLPASFGRTVAEAF-QDGNY------IGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRSGG 317 (499)
Q Consensus 245 nG~SLiI~~~Ii~~lp~~i~~~~~~~~-~~~~~------~~~li~~~~~liv~~~iV~l~~a~rrIPI~~~~r~~~~~~~ 317 (499)
||+|++|++||++++|+.+.+.+.... +...+ ...++.+++++++++++||+|++|||||+||+||..+++
T Consensus 160 nG~SliI~~gI~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~IPi~~~~~~~~~~-- 237 (410)
T TIGR00967 160 NGISLLIFAGIIATIPSGLLQPTEVRQSKVRDLISFLQNLPFLLYLIATIIVFAVVVFVQQARRKIPIQSAKRQGGRR-- 237 (410)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHheeeeeEEEEEEEEhhhhcCCC--
Confidence 999999999999999998876553111 11111 123455566778889999999999999999997655444
Q ss_pred CCcccccceeeccCcchhHHHHHHhhhhHHHHHHhhchh----HHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHhccC
Q 010829 318 LQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIA----ALKKAAVALNPGGSFYLPTNILLIAFFNYYYTFLQLD 393 (499)
Q Consensus 318 ~~~~~ylPiKln~aGvmPiIfassll~lp~~i~~~~~~~----~~~~~~~~l~p~~~~y~~~y~~Lii~Fs~f~s~i~~n 393 (499)
.++++|+|+|+||+|+||+|||++++++|+++++++.+. |.......+++.+|+|.++|++++++|+|||+++++|
T Consensus 238 ~~~~~~iPiKln~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~y~~lii~Fs~f~~~~~~~ 317 (410)
T TIGR00967 238 GSQSTYLPLKLNYAGVIPVIFASALLSNPATISQFLNSNQGGAWFLNPILSLSLSDPIGAILYLILIIFFSFFYVELQLN 317 (410)
T ss_pred CCccceeeeEeeccccHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHccC
Confidence 457899999999999999999999999999999986432 3333334466677899999999999999999999999
Q ss_pred hHHHHHHHHHcCCccccccCChhHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHhcCcccccccccchhHHHHHHHHHH
Q 010829 394 PDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDT 473 (499)
Q Consensus 394 p~diAe~Lkk~G~~IpGiRpG~~T~~yL~kvi~r~t~~Gai~L~~ia~lP~ll~~~~~~~~~~~~gGTslLI~Vgv~~~~ 473 (499)
|||+||||||||++|||+||||+|+|||+|+++|+|++||++++++|++|++++...+.+...++||||+||+||+++|+
T Consensus 318 p~~iA~~lkk~g~~IpGiRpG~~T~~yL~~~i~~~t~~Gai~l~~ia~~p~l~~~~~~~~~~~~~ggtsiLI~Vgv~~~~ 397 (410)
T TIGR00967 318 PEDMAKNLKKQGMFIPGIRPGKMTEKYLKRVIPRLTFVGSLFLGLIALLPNFLGAIGGLPTSKGLGGTSLLIVVGVAIDT 397 (410)
T ss_pred HHHHHHHHHHCCCcCCCcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCchHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999877766554458999999999999999
Q ss_pred HHHHHHHHHHccC
Q 010829 474 ARKVQAEIISQKY 486 (499)
Q Consensus 474 ~~qi~~~~~~~~Y 486 (499)
+||+++|+.+++|
T Consensus 398 ~~qi~~~~~~~~y 410 (410)
T TIGR00967 398 YKQLESYLISRNY 410 (410)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999998
No 6
>PRK12417 secY preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=2e-92 Score=742.42 Aligned_cols=388 Identities=22% Similarity=0.375 Sum_probs=334.3
Q ss_pred hhhcCCchhHHHHHHHHHHHHHhccccccCCcchhhhccccccchhHHHHHhhcCCCCcccceeecCchHHHHHHHHHHH
Q 010829 80 DFFKGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQL 159 (499)
Q Consensus 80 ~~~k~~l~~Kil~Tl~~l~iyrlG~~IPlPGId~~~~~~~~~~~~~l~~l~~fsGg~~~~~SLfsLGI~PyItAsII~QL 159 (499)
++.++++|+|++||++++++||+|+|||+||+|.++..+. .+++++++|+|+||+++|+|+|+|||+|||||||+|||
T Consensus 6 ~~~~~~l~~ki~~Tl~~l~iyrlG~~IPiPGi~~~~~~~~--~~~~~~~~~~fsGG~~~~~slfsLGI~PyItAsII~QL 83 (404)
T PRK12417 6 KFEYKIIYKKILFTCFILFIYILGSNISIPFVSYNDMLGG--HESFLKIAAANTGGDLRTLNIFSLGLGPWMTSMIILQL 83 (404)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHhccCcCCCCCHHHhcCc--cchHHHHHHHhcccccccCcHHHHccHHHHHHHHHHHH
Confidence 4445899999999999999999999999999999987643 25689999999999999999999999999999999999
Q ss_pred Hhhh-chhhHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHhh
Q 010829 160 LAQI-NPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERI 238 (499)
Q Consensus 160 L~~~-~p~L~~l~k~ege~gr~k~~~~tr~ltl~ia~iQa~~~~~~~~~~~~~~~~~~~~~~vl~LvaGt~~l~WL~E~I 238 (499)
|+.+ .|++++++| | |+||+ |||+|+++|++||++++.++.. ..+....++++++++|++|++++|||||+|
T Consensus 84 L~~~~~~~l~~~~k-e-e~gr~-----~r~ltl~la~iQs~~~~~~~~~-~~~~~~~~~~~~~l~L~aGt~~~~WL~E~i 155 (404)
T PRK12417 84 FSYRKRDGLMKQTI-E-EQHYR-----ERILTLIIAVIQSLAVILSLPS-KERISQTNILLNTLILVTGTMFLVWLSDLN 155 (404)
T ss_pred HHhCCCcchhhcCh-H-HHHHH-----HHHHHHHHHHHHHHHHHHHhcc-cccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9987 799999886 5 78886 4999999999999999887632 112222356778899999999999999999
Q ss_pred hcccCCCchhHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHhhccceEeeeeeecccccccCCCC
Q 010829 239 SDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRSGGL 318 (499)
Q Consensus 239 t~~GiGnG~SLiI~~~Ii~~lp~~i~~~~~~~~~~~~~~~~li~~~~~liv~~~iV~l~~a~rrIPI~~~~r~~~~~~~~ 318 (499)
||||+| |+|++|++||++++|+++.+.+... . ......+.++++++++++|+|++|||||+||++|..+++
T Consensus 156 t~~GIG-G~SliI~~~Iv~~~p~~~~~~~~~~---~--~~~~~~~~~~~~~i~~~v~~~~~~rrIPi~~~~~~~~~~--- 226 (404)
T PRK12417 156 ARYGIG-GPMPIVLVSMIKSIPQDVIEYIDAS---H--IVIILLILLVIITLFFLYFIELVEYRIPYNDIMNHNRFK--- 226 (404)
T ss_pred hCCCcc-HHHHHHHHHHHHHHHHHHHHHHHHH---H--HHHHHHHHHHHHHHHHHHHHhheEEEEEEEEhhhhccCC---
Confidence 999999 9999999999999999887654321 1 111222333445566799999999999999988775432
Q ss_pred CcccccceeeccCcchhHHHHHHhhhhHHHHHHhh----chh-HHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHhccC
Q 010829 319 QRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFT----GIA-ALKKAAVALNPGGSFYLPTNILLIAFFNYYYTFLQLD 393 (499)
Q Consensus 319 ~~~~ylPiKln~aGvmPiIfassll~lp~~i~~~~----~~~-~~~~~~~~l~p~~~~y~~~y~~Lii~Fs~f~s~i~~n 393 (499)
+++|+|+|+|+|||||+|||+|++++|+++++++ +++ |.+.....+++++++|.++|++++++|||||+.+++|
T Consensus 227 -~~sylPiKlN~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~lii~fs~fys~i~~n 305 (404)
T PRK12417 227 -MYSYLSIKLNPAGGMPIMYSMSLLVFPQYIIILILSIFPNNSGISADMDMLSFGSPLGVTVYLILQFLLSYFFSFVNIN 305 (404)
T ss_pred -CCcceeeeecccccHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6799999999999999999999999999999875 332 4444555677888899999999999999999999999
Q ss_pred hHHHHHHHHHcCCccccccCChhHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHhcCcc--cccccccchhHHHHHHHH
Q 010829 394 PDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLT--AFRGFAGTSVLILVGCAT 471 (499)
Q Consensus 394 p~diAe~Lkk~G~~IpGiRpG~~T~~yL~kvi~r~t~~Gai~L~~ia~lP~ll~~~~~~~--~~~~~gGTslLI~Vgv~~ 471 (499)
|||+||||||||++|||+||||+|+|||+|+++|+|++||+|++++|++|.+++.. +.+ .+ .++|||+||+|||++
T Consensus 306 P~diAe~lkk~g~~IpGiRPG~~T~~yL~~vi~r~t~~Gai~l~~ia~lP~~~~~~-~~~~~~~-~~ggtsllI~Vgv~l 383 (404)
T PRK12417 306 TKQIAKDMLKSGNYIPGVYPGKDTERYLNYIARRFSWFGALFVTVIAGIPLYFTLF-DPHLSTE-IYFSGQFMMFVGMSF 383 (404)
T ss_pred HHHHHHHHHHCCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCccccc-eeccchheehhhhHH
Confidence 99999999999999999999999999999999999999999999999999998754 332 12 278999999999999
Q ss_pred HHHHHHHHHHHHccCCCe
Q 010829 472 DTARKVQAEIISQKYKNI 489 (499)
Q Consensus 472 ~~~~qi~~~~~~~~Y~~~ 489 (499)
||.+|+|+++.+++|+++
T Consensus 384 dt~~qi~s~l~~~~Y~~~ 401 (404)
T PRK12417 384 NIADEIRALLYFDKYKPL 401 (404)
T ss_pred HHHHHHHHHHHHHHHhHH
Confidence 999999999999999987
No 7
>TIGR02920 acc_sec_Y2 accessory Sec system translocase SecY2. Members of this family are restricted to the Firmicutes lineage (low-GC Gram-positive bacteria) and appear to be paralogous to, and much more divergent than, the preprotein translocase SecY. Members include the SecY2 protein of the accessory Sec system in Streptococcus gordonii, involved in export of the highly glycosylated platelet-binding protein GspB.
Probab=100.00 E-value=5.3e-87 Score=700.72 Aligned_cols=387 Identities=21% Similarity=0.358 Sum_probs=323.3
Q ss_pred CchhHHHHHHHHHHHHHhccccccCCcchhhhccccccchhHHHHHhhcCCCCcccceeecCchHHHHHHHHHHHHhh-h
Q 010829 85 PLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQ-I 163 (499)
Q Consensus 85 ~l~~Kil~Tl~~l~iyrlG~~IPlPGId~~~~~~~~~~~~~l~~l~~fsGg~~~~~SLfsLGI~PyItAsII~QLL~~-~ 163 (499)
.+|+|++||++++++||+|++||+||+|.++......+++.++++|+|+||+++|+|+|+|||+|||||||+||||+. .
T Consensus 1 ~~~~ri~~Tl~~l~iyrlgs~IPlpGi~~~~~~~~~~~~~~l~~l~~~~gg~~~~~slfsLGI~PyItAsIi~QLL~~~~ 80 (395)
T TIGR02920 1 IIYKKILFTCFILIIYVLGSYIPIPFVEVSKQDMEGVKNSFFKIAIANTGGNLTTLSIFSLGLGPWMTSMIILQLFSFTK 80 (395)
T ss_pred CHHHHHHHHHHHHHHHHHhccCCCCCcChhhHHHhcccccHHHHHHHHhcCccccCcHHHhCcHHHHHHHHHHHHHHhCc
Confidence 378999999999999999999999999997621111234688999999999999999999999999999999999998 6
Q ss_pred chhhHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 010829 164 NPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKL 243 (499)
Q Consensus 164 ~p~L~~l~k~ege~gr~k~~~~tr~ltl~ia~iQa~~~~~~~~~~~~~~~~~~~~~~vl~LvaGt~~l~WL~E~It~~Gi 243 (499)
.|++++++| | |.|| +|||+|+++|++||+++++++... .+....+.++++++|++|+++++||||+|||||+
T Consensus 81 ~~~l~~~~~-~-~~~~-----~tr~ltl~~a~iQs~~~~~~~~~~-~~~~~~~~~~~vl~L~~Gt~iv~wL~E~it~~Gi 152 (395)
T TIGR02920 81 SDGFDAQSP-K-EQQY-----RERFLTLIIAIIQGLAIIHSFTNK-NGLSDFNMLLATLILVTGTCLLVWLADLNAKYGI 152 (395)
T ss_pred CcchhhhCH-H-HhhH-----HHHHHHHHHHHHHHHHHHHHhhcc-cccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 899999986 4 4444 499999999999999998776322 1221224667789999999999999999999999
Q ss_pred CCchhHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHhhccceEeeeeeecccccccCCCCCcccc
Q 010829 244 GNGTSLLIFTSIISYLPASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAY 323 (499)
Q Consensus 244 GnG~SLiI~~~Ii~~lp~~i~~~~~~~~~~~~~~~~li~~~~~liv~~~iV~l~~a~rrIPI~~~~r~~~~~~~~~~~~y 323 (499)
| |+|++|++||++++|+.+.+.+. .++...++..++.+++++++++++|++|||||++|++|.. |+ ++++|
T Consensus 153 G-G~sllI~~~I~s~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~v~~~~~~~rIpv~~~~~~~-~~---~~~~y 223 (395)
T TIGR02920 153 G-GSMPIVLVSMLKNIPSNVFELFQ----MSYIWLIALLILLTLVALFLLAFIERAEYRIPVNDISLHN-RS---NLMSY 223 (395)
T ss_pred c-hHHHHHHHHHHHHHHHHHHHHHh----cchHHHHHHHHHHHHHHHHHHHheecceEEEEEEEchhhc-cC---CCCcc
Confidence 9 99999999999999988766442 1122222333344556666799999999999999987653 21 46799
Q ss_pred cceeeccCcchhHHHHHHhhhhHHHH----HHhhchh-HHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHhccChHHHH
Q 010829 324 LPFKVNSSGVMPIIFSTSSLALPGTL----ARFTGIA-ALKKAAVALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVS 398 (499)
Q Consensus 324 lPiKln~aGvmPiIfassll~lp~~i----~~~~~~~-~~~~~~~~l~p~~~~y~~~y~~Lii~Fs~f~s~i~~np~diA 398 (499)
+|+|+||+|+||+|||++++++|+++ +++++++ +.+.+...+++.+++|.++|++++++|||||+.+++||||+|
T Consensus 224 iPiKln~aGvmPiIfassll~~p~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~y~~lii~fs~fys~i~~nP~diA 303 (395)
T TIGR02920 224 LPIKLNPAGGMMYMYVMSLLMLPQYIIILLGRIFPNSSLINNWVFQFSFSSPVGILIYLILQMLLSYFFTFVNINPKEIS 303 (395)
T ss_pred cceEecccCcHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHhhccCCcchHHHHHHHHHHHHHHHHHHHheECHHHHH
Confidence 99999999999999999999999555 4554332 222223345666788999999999999999999999999999
Q ss_pred HHHHHcCCccccccCChhHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHhcC-cccccccccchhHHHHHHHHHHHHHH
Q 010829 399 EQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTH-LTAFRGFAGTSVLILVGCATDTARKV 477 (499)
Q Consensus 399 e~Lkk~G~~IpGiRpG~~T~~yL~kvi~r~t~~Gai~L~~ia~lP~ll~~~~~-~~~~~~~gGTslLI~Vgv~~~~~~qi 477 (499)
|||||||++|||+||||+|+|||+|+++|+|++||++++++|++|.+++...+ ...+. ++|||++|+|||++||+||+
T Consensus 304 ~~Lkk~g~~IpGiRpG~~T~~yL~~~i~~~t~~Gai~l~~ia~lP~~~~~~~~~~~~~~-~ggtsllI~vgv~ldt~~qi 382 (395)
T TIGR02920 304 KSFRKSGNYIPGIAPGKDTQRYLNRLARRFCWFGGVFNAFQLGIPLYFALFVPHLLTEA-YIPGQFMMITGMSFNIADEI 382 (395)
T ss_pred HHHHHCCCCccCcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccee-ehhhhhhhhhhhHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999876644 42333 78999999999999999999
Q ss_pred HHHHHHccCCCe
Q 010829 478 QAEIISQKYKNI 489 (499)
Q Consensus 478 ~~~~~~~~Y~~~ 489 (499)
|+++.+++|+++
T Consensus 383 ~~~~~~~~Y~~~ 394 (395)
T TIGR02920 383 RTILYFDRYKPL 394 (395)
T ss_pred HHHHHHHhhCCC
Confidence 999999999986
No 8
>PRK08568 preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=1.1e-86 Score=709.86 Aligned_cols=379 Identities=22% Similarity=0.277 Sum_probs=322.4
Q ss_pred CCchhHHHHHHHHHHHHHhccccccCCcchhhhccccccchhHHHHHhhcCCCCcccceeecCchHHHHHHHHHHHHhhh
Q 010829 84 GPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQI 163 (499)
Q Consensus 84 ~~l~~Kil~Tl~~l~iyrlG~~IPlPGId~~~~~~~~~~~~~l~~l~~fsGg~~~~~SLfsLGI~PyItAsII~QLL~~~ 163 (499)
+++|+|++||++++++||+|++||+||+|.++ .+.+++++.++||+ ++|+|+|||+|||||||+|||++.
T Consensus 24 ~~l~~ki~~Tl~~l~iyrlgs~IPlpGi~~~~-------~~~l~~l~~~~gg~--~~slf~LGI~PyItAsII~QLL~~- 93 (462)
T PRK08568 24 VPFKEKLKWTAIVLILYFILTNIPLYGISQSS-------QDLFELLRIIFAGS--FGTLLQLGIGPIVTAGIILQLLVG- 93 (462)
T ss_pred ccHHHHHHHHHHHHHHHHHHccCcCCCcCccc-------ccHHHHHHHHhCCc--ccchHHhCcHHHHHHHHHHHHHhh-
Confidence 68999999999999999999999999999875 25778999999996 899999999999999999999975
Q ss_pred chhhHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc---ccchhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010829 164 NPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVN---DFSTDWVLTSVTLLTLGSAFTTYIGERISD 240 (499)
Q Consensus 164 ~p~L~~l~k~ege~gr~k~~~~tr~ltl~ia~iQa~~~~~~~~~~~~---~~~~~~~~~~vl~LvaGt~~l~WL~E~It~ 240 (499)
.++.++++ +.|+||+|+|++||++|+++|++||++++.+++.... ..+..+.+++++||++|++++|||||+|||
T Consensus 94 -~~l~~l~~-~~~~gr~k~~~~tr~lti~~a~iqs~~~~~~~~~~~~~~~~~~~~~~~~i~l~L~~Gt~i~~wL~E~Itk 171 (462)
T PRK08568 94 -SKLINLDL-SDPEDRALFQGLQKLLAIVMIALEAAPFVLAGAFGPATGLASTPLLALLIFLQLFLGGILIILLDELVSK 171 (462)
T ss_pred -Cchheecc-CCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 24445543 4589999999999999999999999999987631111 134446778889999999999999999999
Q ss_pred ccCCCchhHHHHHHHhhhhhHHHHHHH--------------HHHhhcCc----------hHHHHHHHHHHHHHHHHHHhh
Q 010829 241 LKLGNGTSLLIFTSIISYLPASFGRTV--------------AEAFQDGN----------YIGLATIIISFILLVLGIVYV 296 (499)
Q Consensus 241 ~GiGnG~SLiI~~~Ii~~lp~~i~~~~--------------~~~~~~~~----------~~~~li~~~~~liv~~~iV~l 296 (499)
||+|||+|++|++||++++|+++.+.+ .....+++ +++ ++.+++++++++++||+
T Consensus 172 ~GiGnGiSliI~~gI~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~~l~~-l~~~~~~~~i~~~~v~~ 250 (462)
T PRK08568 172 WGIGSGISLFILAGVSQTIFVGLFNWLTGGQGLPVGFIPALFSAITSGNLTLALLLTTRGLL-LLGLITTIVIFLIVVYL 250 (462)
T ss_pred cCcCcchHHHHHHHHHHHHHHHHhhhhcccCccccchHHHHHHHHhcCccchhhhhcccccH-HHHHHHHHHHHHHheeE
Confidence 999999999999999999998876543 01111111 122 45555677888999999
Q ss_pred ccceEeeeeeecccccccCCCCCcccccceeeccCcchhHHHHHHhhhhHHHHHHhhch---hHH-----------HHHH
Q 010829 297 QEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGI---AAL-----------KKAA 362 (499)
Q Consensus 297 ~~a~rrIPI~~~~r~~~~~~~~~~~~ylPiKln~aGvmPiIfassll~lp~~i~~~~~~---~~~-----------~~~~ 362 (499)
|++||||||+|+| .+ ++++|+|+|+||+|+||+|||++++++|+++++++.+ +++ ..+.
T Consensus 251 q~~~~~IPI~~~k-~~------g~~s~iPiKln~aGvmPiIFassll~~p~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~ 323 (462)
T PRK08568 251 ESMRVEIPLSHGR-VR------GARGRYPLKFIYVSVLPVILVRALQANIQLFGQLLQRLGIPILGTYDSSGASPISGLA 323 (462)
T ss_pred EeeEEEEEEEecc-cc------CCCceeeEEecccCcHHHHHHHHHHHHHHHHHHHHhhcCchhhhhcccccccchhHHH
Confidence 9999999999986 33 4678999999999999999999999999999887632 122 3355
Q ss_pred HhcCC--------CCcc----hHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHcCCccccccCChh-HHHHHHHHHHHH
Q 010829 363 VALNP--------GGSF----YLPTNILLIAFFNYYYTFLQ-LDPDDVSEQLKRQGASIPLVRPGKS-TAAFLKTVLSRI 428 (499)
Q Consensus 363 ~~l~p--------~~~~----y~~~y~~Lii~Fs~f~s~i~-~np~diAe~Lkk~G~~IpGiRpG~~-T~~yL~kvi~r~ 428 (499)
++++| .+++ |.++|++++++|+|||+.+. +||||+||||||||++|||+||||+ |+|||+|+++|+
T Consensus 324 ~~~~~p~~~~~~~~~p~~~vvY~~~~~~l~i~Fs~fy~~i~g~~p~diAe~Lkk~g~~IpGiRpG~~~t~~yL~~~i~r~ 403 (462)
T PRK08568 324 YYLSPPHSPYDWIQDPLRAIIYALFMIVLSILFAIFWVETTGLDPKTQARQLQNSGMQIPGFRRNPKVIEKVLERYIPPV 403 (462)
T ss_pred HHhCCCcchhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCcccCcCCCchHHHHHHHHHHHHH
Confidence 66765 2444 78889999999999999995 9999999999999999999999997 999999999999
Q ss_pred HHHhHHHHHHHHHhHHHHHHhcCcccccccccchhHHHHHHHHHHHHHHHHHHHHccCCCee
Q 010829 429 SVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIE 490 (499)
Q Consensus 429 t~~Gai~L~~ia~lP~ll~~~~~~~~~~~~gGTslLI~Vgv~~~~~~qi~~~~~~~~Y~~~~ 490 (499)
|++||++++++|++|++++. . ++|||++|+||+++|++||+++|+.+++|++++
T Consensus 404 t~~Ga~~l~~ia~lp~~~~~------~--g~gtslLI~Vgv~~~~~~qi~~~~~~~~Y~~~~ 457 (462)
T PRK08568 404 TVIGGAIVGLLAVLADLLGA------L--GGGTGLLLTVSIVYQLYEEIAREQLMEMYPLLR 457 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHh------c--CCchhhhhhHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999872 2 479999999999999999999999999999884
No 9
>PTZ00219 Sec61 alpha subunit; Provisional
Probab=100.00 E-value=2.8e-80 Score=661.46 Aligned_cols=370 Identities=19% Similarity=0.205 Sum_probs=307.4
Q ss_pred CCchhHHHHHHHHHHHHHhccccccCCcchhhhccccccchhHHHHHhhcCCCCcccceeecCchHHHHHHHHHHHHhh-
Q 010829 84 GPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQ- 162 (499)
Q Consensus 84 ~~l~~Kil~Tl~~l~iyrlG~~IPlPGId~~~~~~~~~~~~~l~~l~~fsGg~~~~~SLfsLGI~PyItAsII~QLL~~- 162 (499)
.++|+|++||++++++||+|++||+||+|.++.. ++++++.+.|+|+ |+|+|+|||+||||||||||||++
T Consensus 28 ~~lr~Kil~T~~~l~iy~lg~~IPlpGi~~~~~~-----~~~~~~~~ifag~---~~slf~LGI~PyItAsII~QLL~~~ 99 (474)
T PTZ00219 28 IPFKEKVLWTAIALFVFLVCCQIPLYGIRSSSSS-----DPFYWMRVILASN---RGTLMELGISPIVTSSMVMQLLAGS 99 (474)
T ss_pred ccHHHHHHHHHHHHHHHHHhccCcCCCcChhhcc-----chHHHHHHHHhcC---cchHHHhccHHHHHHHHHHHHHhhC
Confidence 6899999999999999999999999999998543 4677788888775 889999999999999999999974
Q ss_pred -hchhhHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--cccchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 010829 163 -INPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYV--NDFSTDWVLTSVTLLTLGSAFTTYIGERIS 239 (499)
Q Consensus 163 -~~p~L~~l~k~ege~gr~k~~~~tr~ltl~ia~iQa~~~~~~~~~~~--~~~~~~~~~~~vl~LvaGt~~l~WL~E~It 239 (499)
++|..++ .+++|||+|++||++|+++|++||++++... .++ .+.++...+++++||++|+++++||||+||
T Consensus 100 ~l~~~~~~-----~~~~r~k~~~~tr~lti~la~iqa~~~~~~~-~~g~~~~~~~~~~~~iilqL~~g~~~v~wL~E~It 173 (474)
T PTZ00219 100 KIIDVDQN-----NKEDRALFEGAQKLLGLLITLGEAVAYVWSG-MYGDISEIGAGNAILIILQLFFAGIVVILLDELLQ 173 (474)
T ss_pred Ccccchhh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444433 4456999999999999999999999998542 222 233443567788999999999999999999
Q ss_pred c-ccCCCchhHHHHHHHhhhhh-HHH-----------------HHHHHHHhhc-C------------chHHHHHHHHHHH
Q 010829 240 D-LKLGNGTSLLIFTSIISYLP-ASF-----------------GRTVAEAFQD-G------------NYIGLATIIISFI 287 (499)
Q Consensus 240 ~-~GiGnG~SLiI~~~Ii~~lp-~~i-----------------~~~~~~~~~~-~------------~~~~~li~~~~~l 287 (499)
| ||+|||+||+|++||++++| +.+ .+.++..... + ++++ ++.+++++
T Consensus 174 kg~GIGnGiSL~I~agI~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~r~~l~~-~~~~~~~~ 252 (474)
T PTZ00219 174 KGYGLGSGISLFIATNICETIIWKAFSPTTINTGRGTEFEGAIIALFHLLFTRSDKLRALKEAFYRPHLPN-LTNLLATV 252 (474)
T ss_pred cCcccccchHHHHHHHHHHHhHHHhcccccccccccccchhhHHHHHHHHhhcccccchhhhhhhhccccc-HHHHHHHH
Confidence 9 99999999999999999998 433 2222210011 0 1233 33345677
Q ss_pred HHHHHHHhhccceEeeeeeecccccccCCCCCcccccceeeccCcchhHHHHHHhhhhHHHHHHhh----chh-------
Q 010829 288 LLVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFT----GIA------- 356 (499)
Q Consensus 288 iv~~~iV~l~~a~rrIPI~~~~r~~~~~~~~~~~~ylPiKln~aGvmPiIfassll~lp~~i~~~~----~~~------- 356 (499)
++++++||+|++|||||++|+|+. ++++++|+|+||+|+||+|||++++++|+++++++ +++
T Consensus 253 ~i~~~vv~~~~~~~~IPi~~~~~~-------g~~~~~PiKln~agvmPiIfassll~~p~~i~~~l~~~~~~~~~~~~l~ 325 (474)
T PTZ00219 253 LVFLVVIYFQGFRVDLPLKSQKVR-------GQQQSYPIKLFYTSNIPIILQTALVSNLYFFSQILYRRFKNNFLINLLG 325 (474)
T ss_pred HHHHhheeeeeeEEEEeeeccccc-------CcCcccceeecccccHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccc
Confidence 888999999999999999998633 34677799999999999999999999999998886 221
Q ss_pred -HHH--H---------HHHhcCC--------CCcchHHHHHHHHHHHHHHHHHhc-----cChHHHHHHHHHcCCccccc
Q 010829 357 -ALK--K---------AAVALNP--------GGSFYLPTNILLIAFFNYYYTFLQ-----LDPDDVSEQLKRQGASIPLV 411 (499)
Q Consensus 357 -~~~--~---------~~~~l~p--------~~~~y~~~y~~Lii~Fs~f~s~i~-----~np~diAe~Lkk~G~~IpGi 411 (499)
|.+ . +.++++| .+++|.++|++++++|||||+.+. +||||+||||||||++|||+
T Consensus 326 ~~~~~~~~~~~~~v~gl~~~l~~p~~~~~~~~~p~~~iiy~ilii~fs~ffs~~~v~~sg~~p~~iA~~lkk~g~~IpG~ 405 (474)
T PTZ00219 326 QWQEVEYSGQSVPVGGLAYYLSPPNSFSDIINDPIHTILYIVFVLFSCALFSKTWIEVSGSSAKDVAKQLKDQGMGMVGY 405 (474)
T ss_pred ceeccccccccccchhHHhhcCCCcchhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCccCc
Confidence 211 1 4556765 367899999999999999999875 89999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHhcCcccccccccchhHHHHHHHHHHHHHHHHHHHH
Q 010829 412 RPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIIS 483 (499)
Q Consensus 412 RpG~~T~~yL~kvi~r~t~~Gai~L~~ia~lP~ll~~~~~~~~~~~~gGTslLI~Vgv~~~~~~qi~~~~~~ 483 (499)
||||+|+|||+|+++|+|++||+|++++|++|++++. . .||||+||+||++++++|++.+|+.+
T Consensus 406 RpGk~t~~yL~k~i~r~t~~Ga~~l~~ia~lp~~~~~------~--~gGTslLI~VgV~~~~~e~~~~e~~~ 469 (474)
T PTZ00219 406 RDSSSMVRVLNRYIPTAASFGGMCIGALTILADFLGA------I--GSGTGILLAVTIIYQYYETFAKEKEQ 469 (474)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------c--CCchhhhhhHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999872 2 48999999999999999999999766
No 10
>PF00344 SecY: SecY translocase; InterPro: IPR002208 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The eubacterial secY protein [] interacts with the signal sequences of secretory proteins as well as with two other components of the protein translocation system: secA and secE. SecY is an integral plasma membrane protein of 419 to 492 amino acid residues that apparently contains 10 transmembrane (TM), 6 cytoplasmic and 5 periplasmic regions. Cytoplasmic regions 2 and 3, and TM domains 1, 2, 4, 5, 7 and 10 are well conserved: the conserved cytoplasmic regions are believed to interact with cytoplasmic secretion factors, while the TM domains may participate in protein export []. Homologs of secY are found in archaebacteria []. SecY is also encoded in the chloroplast genome of some algae [] where it could be involved in a prokaryotic-like protein export system across the two membranes of the chloroplast endoplasmic reticulum (CER) which is present in chromophyte and cryptophyte algae.; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0015031 protein transport, 0016020 membrane; PDB: 3J01_A 2ZJS_Y 2ZQP_Y 2WWA_A 2WW9_A 2YXR_A 1RHZ_A 3KCR_A 3DKN_A 2YXQ_A ....
Probab=100.00 E-value=1e-74 Score=599.62 Aligned_cols=327 Identities=41% Similarity=0.643 Sum_probs=283.9
Q ss_pred ceeecCchHHHHHHHHHHHHhhhchhhHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-c-------c
Q 010829 141 GICSLGIVPFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVN-D-------F 212 (499)
Q Consensus 141 SLfsLGI~PyItAsII~QLL~~~~p~L~~l~k~ege~gr~k~~~~tr~ltl~ia~iQa~~~~~~~~~~~~-~-------~ 212 (499)
|+|+|||+|||||||+||++. .|+++|+++ |||+||+|++++||++|+++|++||++++..++.+.. + .
T Consensus 1 SlfsLGI~PyitAsIi~Qll~--~~~l~~l~~-~g~~~~~~~~~~tr~ltl~~a~iqa~~~~~~~~~~~~~~~~~~~~~~ 77 (346)
T PF00344_consen 1 SLFSLGIGPYITASIIMQLLI--IPKLIKLQK-EGEEGRKKLNRYTRYLTLILAVIQAIGIVLSLGYYGSVSPLILSSGS 77 (346)
T ss_dssp BTTSSTTHHHHHHHHHHHHHH--SSSSSSHST-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSSTTC-TTSTT
T ss_pred ChHhhccHHHHHHHHHHHHHh--cccHHHhhh-cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccch
Confidence 699999999999999999994 699999997 7999999999999999999999999999977655542 1 2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHHHhhhhhHHHHHHHHHHhh----cCchHHHHHHHHHHHH
Q 010829 213 STDWVLTSVTLLTLGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQ----DGNYIGLATIIISFIL 288 (499)
Q Consensus 213 ~~~~~~~~vl~LvaGt~~l~WL~E~It~~GiGnG~SLiI~~~Ii~~lp~~i~~~~~~~~~----~~~~~~~li~~~~~li 288 (499)
+....++++++|++|+++++||||+|||||+|||+|++|++||++++|+.+.+.++.... ..+....+..++++++
T Consensus 78 ~~~~~~~i~l~L~~G~~i~~wL~e~it~~GiGnG~SliI~~~I~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 157 (346)
T PF00344_consen 78 GFINYLLIVLQLVAGSMILIWLSELITKYGIGNGISLIIFAGIISNLPWSIINLFQLLSNKAGSLSNALFLLIILIITLV 157 (346)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSTSSSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 344457889999999999999999999999999999999999999999998887766541 1233434566677788
Q ss_pred HHHHHHhhccceEeeeeeecccccccCCCCCcccccceeeccCcchhHHHHHHhhhhHHHHHHhhchh----HH-HHHHH
Q 010829 289 LVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIA----AL-KKAAV 363 (499)
Q Consensus 289 v~~~iV~l~~a~rrIPI~~~~r~~~~~~~~~~~~ylPiKln~aGvmPiIfassll~lp~~i~~~~~~~----~~-~~~~~ 363 (499)
+++++||+|++|||||++|+++. +...++++|+|+|+||+|+||+||+++++++|+++++++... +. ..+.+
T Consensus 158 ~~~~~v~l~~~~~rIPi~~~~~~---~~~~~~~~ylPikln~aG~mPiifa~sll~~p~~i~~~l~~~~~~~~~~~~i~~ 234 (346)
T PF00344_consen 158 VIALVVYLQEAERRIPIQYARIV---NSSRGQSSYLPIKLNYAGVMPIIFASSLLSLPQYIAQFLNSQFPNNWLVSGIAY 234 (346)
T ss_dssp HHHHHHHHHHCEEEECEBBSSSB-----SSSBCSCEEEETTSSTHHHHHHHHHHHHHHHHHHHHCTTCSCCSCCSSCCHH
T ss_pred HHHhheeeeeeEEEEEEEecccc---ccCcccceeeeeeccccccchHHHHHHHHHHHHHHHHhccCCCccccHHHHHHH
Confidence 89999999999999999998752 223367999999999999999999999999999999987432 21 12455
Q ss_pred hc--CCCCcchHHHHHHHHHHHHHHHHHhccChHHHHHHHHHcCCccccccCChhHHHHHHHHHHHHHHHhHHHHHHHHH
Q 010829 364 AL--NPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAA 441 (499)
Q Consensus 364 ~l--~p~~~~y~~~y~~Lii~Fs~f~s~i~~np~diAe~Lkk~G~~IpGiRpG~~T~~yL~kvi~r~t~~Gai~L~~ia~ 441 (499)
++ +++.++|..+|++++++|+|+|+++++||||+||||||+|++|||+||||+|+|||+|+++|++++||++++++++
T Consensus 235 ~~~~~~~~~~y~~~~~~li~~Fs~~~~~~~~~p~~iA~~lkk~g~~I~GirpG~~T~~yL~~~i~~~~~~G~~~l~~ia~ 314 (346)
T PF00344_consen 235 YFSQNLNSPLYIIFYLILIILFSYFFSFININPKDIAENLKKSGDYIPGIRPGKPTEKYLNKVIPRLSFLGALFLALIAV 314 (346)
T ss_dssp HTSSSHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHCHCTTSSSSTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCcchHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhCCEeCCCCCChhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 66 5567789999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCcccccccccchhHHHHHHHHHHHH
Q 010829 442 GPAVIEQTTHLTAFRGFAGTSVLILVGCATDTAR 475 (499)
Q Consensus 442 lP~ll~~~~~~~~~~~~gGTslLI~Vgv~~~~~~ 475 (499)
+|++++...+ .... ++|||++|+||+++|++|
T Consensus 315 ~p~~~~~~~~-~~~~-~~gtslli~V~v~~~~~~ 346 (346)
T PF00344_consen 315 LPLIFGLFGG-SSLF-FGGTSLLIIVGVIIDTYE 346 (346)
T ss_dssp HHHHHTTSSS-CSCC-CTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcc-cchh-hHHHHHHHHHHHHHHhcC
Confidence 9999987766 3333 799999999999999986
No 11
>KOG1373 consensus Transport protein Sec61, alpha subunit [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-58 Score=464.52 Aligned_cols=376 Identities=19% Similarity=0.192 Sum_probs=318.8
Q ss_pred cCCchhHHHHHHHHHHHHHhccccccCCcchhhhccccccchhHHHHHhhcCCCCcccceeecCchHHHHHHHHHHHHhh
Q 010829 83 KGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQ 162 (499)
Q Consensus 83 k~~l~~Kil~Tl~~l~iyrlG~~IPlPGId~~~~~~~~~~~~~l~~l~~fsGg~~~~~SLfsLGI~PyItAsII~QLL~~ 162 (499)
|.++|+|++||...+++|.+++|||++|+..+.-.| +++ +++.+.|. +|.++|+|||.|++|++.|||+|++
T Consensus 26 k~pf~eK~~wt~i~~~iflv~~QiPLyGi~ssdt~D-----P~y-w~Rvilas--nrgTLMelGisPivtSglimQlLag 97 (476)
T KOG1373|consen 26 KLPFREKLLWTAISLLIFLVCSQIPLYGIMSSDTAD-----PFY-WMRVILAS--NRGTLMELGISPIVTSGLIMQLLAG 97 (476)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhccccccccCCCCC-----cHH-HHHHHHhc--CCcchhhhccchhhHHHHHHHHHcc
Confidence 468999999999999999999999999998775543 443 45555655 7999999999999999999999997
Q ss_pred hchhhHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--cccchhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010829 163 INPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYV--NDFSTDWVLTSVTLLTLGSAFTTYIGERISD 240 (499)
Q Consensus 163 ~~p~L~~l~k~ege~gr~k~~~~tr~ltl~ia~iQa~~~~~~~~~~~--~~~~~~~~~~~vl~LvaGt~~l~WL~E~It~ 240 (499)
.++.+.+. +-++||+.+|..||++++++++.||..+++++ .|+ .+.+...++++++||+..+.+++.|||+++|
T Consensus 98 --~kiIeV~~-~~~~DR~Lfn~aQKl~~iii~vgqa~~yV~tG-~yG~p~dLg~~~clLii~QL~~Agiiv~lLdEllqK 173 (476)
T KOG1373|consen 98 --SKIIEVNF-NIKEDRELFNGAQKLFAIIITVGQAVVYVMTG-MYGSPSDLGVGICLLIILQLFFAGIIVILLDELLQK 173 (476)
T ss_pred --CcEEEecC-CChhhHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccCChhhcchhHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 67777764 56779999999999999999999999999987 565 5788888999999999999999999999999
Q ss_pred -ccCCCchhHHHHHHHhhhhhH------------------HHHHHHHHHh-------------hcCchHHHHHHHHHHHH
Q 010829 241 -LKLGNGTSLLIFTSIISYLPA------------------SFGRTVAEAF-------------QDGNYIGLATIIISFIL 288 (499)
Q Consensus 241 -~GiGnG~SLiI~~~Ii~~lp~------------------~i~~~~~~~~-------------~~~~~~~~li~~~~~li 288 (499)
||+|||+|++|.+|||+++.+ ++++.++.+. ...|+|| +..++++++
T Consensus 174 GyGlgSGislfiatnice~ivwkaFsptti~tGrg~efeGAvIalfhll~tr~~k~~al~eAF~RqnLPN-l~nl~at~l 252 (476)
T KOG1373|consen 174 GYGLGSGISLFIATNICESIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRKDKVRALREAFYRQNLPN-LTNLLATVL 252 (476)
T ss_pred ccCcCcchhhhhHHHHHHHHHHHhcCceEEecCCCceechHHHHHHHHHHhcchHHHHHHHHHHHhcccH-HHHHHHHHH
Confidence 999999999999999999853 2333333222 2246777 666777888
Q ss_pred HHHHHHhhccceEeeeeeecccccccCCCCCcccccceeeccCcchhHHHHHHhhhhHHHHHHhh----chh--------
Q 010829 289 LVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFT----GIA-------- 356 (499)
Q Consensus 289 v~~~iV~l~~a~rrIPI~~~~r~~~~~~~~~~~~ylPiKln~aGvmPiIfassll~lp~~i~~~~----~~~-------- 356 (499)
++++++|+|..|+++|++++ |.| ++.+.+|||+.|++.||+|+.|++.+....++|++ +.+
T Consensus 253 if~iViYlQgfRVeLPirS~-r~R------G~~~~yPIKL~YTsn~pIilqsalvsni~~isqll~~k~~~n~~v~llG~ 325 (476)
T KOG1373|consen 253 IFLIVIYLQGFRVELPIRST-RAR------GQYGSYPIKLFYTSNMPIILQSALVSNIFVISQLLYKKFPGNFLVRLLGV 325 (476)
T ss_pred HHHHHhhccceEEEeeecch-hhc------ccCCccceEeeecCCcHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEEee
Confidence 89999999999999999987 466 57888999999999999999999999888888775 211
Q ss_pred HHH-----------HHHHhcCCC--------CcchHHHH----HHHHHHHHHHHHHh-ccChHHHHHHHHHcCCcccccc
Q 010829 357 ALK-----------KAAVALNPG--------GSFYLPTN----ILLIAFFNYYYTFL-QLDPDDVSEQLKRQGASIPLVR 412 (499)
Q Consensus 357 ~~~-----------~~~~~l~p~--------~~~y~~~y----~~Lii~Fs~f~s~i-~~np~diAe~Lkk~G~~IpGiR 412 (499)
|.+ .+.+|++|. +|++.++| ...|.+|+.-|.++ +.+|||+|+|||+|++.++|+|
T Consensus 326 w~~~~~~~~~~p~~glsyy~~pp~s~~~~~~dPi~~i~Yi~fml~sca~FsktWievSgsSarDvAkqlKeQ~mvm~G~R 405 (476)
T KOG1373|consen 326 WEDSEGGGRSMPVSGLSYYITPPESFGEALQDPIHFLVYIVFMLGSCALFSKTWIEVSGSSARDVAKQLKEQQMVMRGHR 405 (476)
T ss_pred eecCCCCcccccccceeEecCChHHHHHHhhCcchhHHHHHHHHHHHHHHHhHHHHHcCCCHHHHHHHHHhccceecCcc
Confidence 221 133455552 45555555 45889999999999 9999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHhcCcccccccccchhHHHHHHHHHHHHHHHHHHHHccCC
Q 010829 413 PGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYK 487 (499)
Q Consensus 413 pG~~T~~yL~kvi~r~t~~Gai~L~~ia~lP~ll~~~~~~~~~~~~gGTslLI~Vgv~~~~~~qi~~~~~~~~Y~ 487 (499)
.+ +++|+|+|++|.++++||.+++.++++.++++ +. ++||+++++|+++++++|.+++|...+.+.
T Consensus 406 E~-n~~~eLnr~IPtAA~~Gg~~igaltV~~d~lg------ai--GsgtgIllavt~iyqy~E~~~kE~~~~~g~ 471 (476)
T KOG1373|consen 406 ET-NMAKELNRYIPTAAAFGGLCIGALTVLADLLG------AI--GSGTGILLAVTIIYQYFEIFAKEQAQEGGF 471 (476)
T ss_pred hh-hHHHHHHhhccHHHHhhhhHHHHHHHHHHHhh------cc--cCCceEEeehHHHHHHHHHHHHHHhhcCCc
Confidence 97 89999999999999999999999999999987 33 689999999999999999999999887764
No 12
>PF10559 Plug_translocon: Plug domain of Sec61p; InterPro: IPR019561 The Sec61/SecY translocon mediates translocation of proteins across the membrane and integration of membrane proteins into the lipid bilayer. The structure of the translocon revealed a plug domain blocking the pore on the lumenal side. The plug is unlikely to be important for sealing the translocation pore in yeast but it plays a role in stabilising Sec61p during translocon formation. The domain runs from residues 52-74 []. ; PDB: 2YXR_A 1RHZ_A 3KCR_A 3DKN_A 2YXQ_A 1RH5_A 3BO1_A 3BO0_A 2WWA_A 2WW9_A ....
Probab=90.71 E-value=0.14 Score=36.06 Aligned_cols=33 Identities=18% Similarity=0.100 Sum_probs=20.3
Q ss_pred HHHHhccccccCCcchhhhccccccchhHHHHHhhcCCC
Q 010829 98 ALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGG 136 (499)
Q Consensus 98 ~iyrlG~~IPlPGId~~~~~~~~~~~~~l~~l~~fsGg~ 136 (499)
++|.++++|||+|++.....| .+.+++++.+|+
T Consensus 1 ilYl~ls~ipLyG~~~~~~~D------~f~~~R~i~As~ 33 (35)
T PF10559_consen 1 ILYLFLSQIPLYGLQSASSSD------PFYWLRAIFASN 33 (35)
T ss_dssp HHHHHHHHSB-STSTTTTSSC------CHTTTHHHHTSS
T ss_pred CEEEEeeCCccccccCCCcCC------HHHHHHHHHccc
Confidence 578999999999994443332 223455555653
No 13
>PF07330 DUF1467: Protein of unknown function (DUF1467); InterPro: IPR009935 This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=60.98 E-value=17 Score=30.76 Aligned_cols=58 Identities=17% Similarity=0.273 Sum_probs=44.3
Q ss_pred HHHHHHHHHhccChHHHHHHHHHcCCccccccCChhHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 010829 381 AFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAG 442 (499)
Q Consensus 381 i~Fs~f~s~i~~np~diAe~Lkk~G~~IpGiRpG~~T~~yL~kvi~r~t~~Gai~L~~ia~l 442 (499)
+.+.-+|.-+-+.-+...| .|..+||--||.|..-.+.|...+.|.++++.-++++.+
T Consensus 13 iWw~~lF~vLP~gvrtq~E----~g~vv~Gt~~sAP~~~~l~rk~~~TTiiaavi~~~~~~~ 70 (85)
T PF07330_consen 13 IWWIVLFAVLPFGVRTQDE----AGEVVPGTDPSAPANPRLKRKALITTIIAAVIFAIIYLI 70 (85)
T ss_pred HHHHHHHHHccCCccccCc----CCCcCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555444443333 588899999999999999999999999999988877665
No 14
>PF05697 Trigger_N: Bacterial trigger factor protein (TF); InterPro: IPR008881 In the Escherichia coli cytosol, a fraction of the newly synthesised proteins requires the activity of molecular chaperones for folding to the native state. The major chaperones implicated in this folding process are the ribosome-associated Trigger Factor (TF), and the DnaK and GroEL chaperones with their respective co-chaperones. Trigger Factor is an ATP-independent chaperone and displays chaperone and peptidyl-prolyl-cis-trans-isomerase (PPIase) activities in vitro. It is composed of at least three domains, an N-terminal domain which mediates association with the large ribosomal subunit, a central substrate binding and PPIase domain with homology to FKBP proteins, and a C-terminal domain of unknown function. The positioning of TF at the peptide exit channel, together with its ability to interact with nascent chains as short as 57 residues renders TF a prime candidate for being the first chaperone that binds to the nascent polypeptide chains []. This group of sequences contain the ribosomal subunit association domain.; GO: 0006457 protein folding, 0015031 protein transport; PDB: 2D3O_1 1W26_A 1P9Y_A 1OMS_C 1T11_A 3GU0_A 2NSB_A 2NSC_A 3GTY_X.
Probab=39.15 E-value=62 Score=29.31 Aligned_cols=31 Identities=16% Similarity=0.282 Sum_probs=20.9
Q ss_pred cCCccccccCChhHHHHHHHHHHHHHHHhHHH
Q 010829 404 QGASIPLVRPGKSTAAFLKTVLSRISVLGSVF 435 (499)
Q Consensus 404 ~G~~IpGiRpG~~T~~yL~kvi~r~t~~Gai~ 435 (499)
....|||+|||+.-.+-+.+....- +.....
T Consensus 37 k~~~ipGFRkGK~P~~vi~~~~g~~-i~~~~~ 67 (145)
T PF05697_consen 37 KKVKIPGFRKGKAPRNVIEKRYGKE-IREEAI 67 (145)
T ss_dssp TTTTBTTS-TTSS-HHHHHHHHCHH-HHHHHH
T ss_pred hhCCCCCCCCCCCCHHHHHHHHHHH-HHHHHH
Confidence 4668999999997777777777665 444444
No 15
>PF04923 Ninjurin: Ninjurin ; InterPro: IPR007007 Ninjurin (nerve injury-induced protein) is involved in nerve regeneration and in the formation of some tissues [].; GO: 0007155 cell adhesion, 0042246 tissue regeneration, 0016021 integral to membrane
Probab=35.46 E-value=99 Score=27.10 Aligned_cols=44 Identities=11% Similarity=0.230 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHhhhchhh-HHhhhhhcHHHHHHHHHHHHHHHHH
Q 010829 148 VPFINAQIVFQLLAQINPKL-QDLQKREGEAGRKKVLQYTRYASVG 192 (499)
Q Consensus 148 ~PyItAsII~QLL~~~~p~L-~~l~k~ege~gr~k~~~~tr~ltl~ 192 (499)
.=.++.||++|++.++.--+ .+.+- +.++.+++.++...+.+.+
T Consensus 45 l~Li~iSlvLQv~vgilli~~~~~n~-~~~~~~~~~~~lnn~~~~~ 89 (104)
T PF04923_consen 45 LTLISISLVLQVVVGILLIFISRYNI-NKPEKQRRANRLNNWATIL 89 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHHHHH
Confidence 34588999999998753322 22322 2233344455544444433
No 16
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=33.62 E-value=1.4e+02 Score=27.90 Aligned_cols=26 Identities=8% Similarity=0.272 Sum_probs=19.5
Q ss_pred HHHHHHhhhchhhHHhhhhhcHHHHHHHH
Q 010829 155 IVFQLLAQINPKLQDLQKREGEAGRKKVL 183 (499)
Q Consensus 155 II~QLL~~~~p~L~~l~k~ege~gr~k~~ 183 (499)
+|=|+|. -.+++++++|+++||-.|+
T Consensus 3 ~Ik~IL~---~~id~iN~~E~RDnkprFs 28 (155)
T PF10777_consen 3 EIKRILI---EEIDRINREEKRDNKPRFS 28 (155)
T ss_pred HHHHHHH---HHHHHHHHHhccCCCcccc
Confidence 3456666 5788999989888887665
No 17
>COG5454 Predicted secreted protein [Function unknown]
Probab=29.45 E-value=2.6e+02 Score=23.62 Aligned_cols=63 Identities=14% Similarity=0.235 Sum_probs=47.8
Q ss_pred HHHHHHHHHhccChHHHHHHHHHcCCccccccCChhHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHH
Q 010829 381 AFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIE 447 (499)
Q Consensus 381 i~Fs~f~s~i~~np~diAe~Lkk~G~~IpGiRpG~~T~~yL~kvi~r~t~~Gai~L~~ia~lP~ll~ 447 (499)
+.-+-.|+.+-+.-+..+| .|+.-||.-|+.++.-.+.|.+-|.|+..++..++-..+-...+
T Consensus 13 iWWtvLFavLP~g~Rtq~e----e~dv~lGtv~sAP~~p~~~R~vl~TT~~savi~gl~y~lt~~~g 75 (89)
T COG5454 13 IWWTVLFAVLPLGVRTQDE----EGDVTLGTVPSAPANPHLLRAVLRTTVASAVIFGLFYGLTHFLG 75 (89)
T ss_pred HHHHHHHHHhcccccchhh----cCCCCCCcCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444445555555555554 57999999999999999999999999999998888777766554
No 18
>PHA01632 hypothetical protein
Probab=21.72 E-value=66 Score=25.17 Aligned_cols=17 Identities=41% Similarity=0.552 Sum_probs=14.7
Q ss_pred cCChhHHHHHHHHHHHH
Q 010829 412 RPGKSTAAFLKTVLSRI 428 (499)
Q Consensus 412 RpG~~T~~yL~kvi~r~ 428 (499)
-|.++|++.|+|+++++
T Consensus 24 vp~kpteeelrkvlpki 40 (64)
T PHA01632 24 VPQKPTEEELRKVLPKI 40 (64)
T ss_pred cCCCCCHHHHHHHHHHH
Confidence 47789999999999875
No 19
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=20.09 E-value=2.1e+02 Score=26.86 Aligned_cols=32 Identities=22% Similarity=0.329 Sum_probs=21.2
Q ss_pred ChHHHHHHHHHcCCccccccCChhHHHHHHHHH
Q 010829 393 DPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVL 425 (499)
Q Consensus 393 np~diAe~Lkk~G~~IpGiRpG~~T~~yL~kvi 425 (499)
||+|+|++++..- .++..++.++.++....+.
T Consensus 52 ~P~~iA~~i~~~~-~i~~~~~~~~~~~~~~~i~ 83 (181)
T PF08006_consen 52 SPKEIAREILAEY-SIKEEEKKKSWRNILRAIL 83 (181)
T ss_pred CHHHHHHHHHHhh-hhhhhhccchhhhhHHHHH
Confidence 9999999999764 4555655555555544443
Done!