Query 010829
Match_columns 499
No_of_seqs 171 out of 1186
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 15:08:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010829.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010829hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zjs_Y Preprotein translocase 100.0 1E-104 4E-109 838.7 41.1 411 78-490 5-428 (434)
2 3dl8_G Preprotein translocase 100.0 2E-105 7E-110 844.7 20.2 410 78-489 5-426 (429)
3 3din_C Preprotein translocase 100.0 1E-103 4E-108 831.0 21.6 404 78-490 5-422 (431)
4 3j01_A Preprotein translocase 100.0 1E-103 4E-108 832.2 18.3 404 84-490 10-426 (435)
5 1rh5_A Preprotein translocase 100.0 3.5E-93 1.2E-97 752.4 27.5 381 83-493 20-435 (436)
6 3mp7_A Preprotein translocase 100.0 9.5E-93 3.3E-97 756.7 13.4 376 84-490 24-463 (482)
7 2ww9_A SEC sixty-one protein h 100.0 4.9E-89 1.7E-93 729.3 23.7 377 83-486 26-476 (490)
8 2wwb_A Protein transport prote 100.0 7.3E-86 2.5E-90 703.3 30.8 369 83-482 25-466 (476)
9 2nsc_A Trigger factor, TF; cha 51.2 9.4 0.00032 32.0 3.0 23 404-426 37-59 (109)
10 1p9y_A Trigger factor, TF; alp 43.5 15 0.0005 31.5 3.0 23 405-427 41-63 (121)
11 2d3o_1 Trigger factor, TF; rib 35.0 12 0.00042 31.5 1.1 22 405-426 37-58 (112)
No 1
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y
Probab=100.00 E-value=1.2e-104 Score=838.68 Aligned_cols=411 Identities=32% Similarity=0.526 Sum_probs=355.9
Q ss_pred hhhhhc-CCchhHHHHHHHHHHHHHhccccccCCcchhhhcccccc--chhHHHHHhhcCCCCcccceeecCchHHHHHH
Q 010829 78 FGDFFK-GPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQ--NSLLSTLDSFSGGGIGRLGICSLGIVPFINAQ 154 (499)
Q Consensus 78 ~~~~~k-~~l~~Kil~Tl~~l~iyrlG~~IPlPGId~~~~~~~~~~--~~~l~~l~~fsGg~~~~~SLfsLGI~PyItAs 154 (499)
+.|.|| +++|+|++||++++++||+|+|||+||+|.++.++.+++ +++++++|+|+||+++|+|+|+|||+||||||
T Consensus 5 ~~~~~~~~~lr~kilfTl~~L~iyrlg~~IPlPGi~~~~~~~~~~~~~~~~~~~~~~fsGGa~~~~SifaLGI~PyItAS 84 (434)
T 2zjs_Y 5 FWSALQIPELRQRVLFTLLVLAAYRLGAFIPTPGVDLDKIQEFLRTAQGGVFGIINLFSGGNFERFSIFALGIMPYITAA 84 (434)
T ss_dssp HHHHHSSHHHHHHHHHHHHHHHHHHHHTTCBCTTBCHHHHHHHHHSSGGGTTHHHHHHTTSCGGGTBTTSSTTHHHHHHH
T ss_pred HHhHhcchhHHHHHHHHHHHHHHHHHhcccccCCcCHHHHHHHHhcccccHHHHHHHHcccccccCcHHHHhhHHHHHHH
Confidence 457788 799999999999999999999999999999987654322 47889999999999999999999999999999
Q ss_pred HHHHHHhhhchhhHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-c-cc----cc--cchhHHHHHHHHHHH
Q 010829 155 IVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLR-P-YV----ND--FSTDWVLTSVTLLTL 226 (499)
Q Consensus 155 II~QLL~~~~p~L~~l~k~ege~gr~k~~~~tr~ltl~ia~iQa~~~~~~~~-~-~~----~~--~~~~~~~~~vl~Lva 226 (499)
||||||+.++|.++|++| |||+||||+|++|||+|+++|++||++++.+++ . ++ .+ .+..+.++++++|++
T Consensus 85 II~QLL~~vip~l~~l~k-eGe~Gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~vl~L~a 163 (434)
T 2zjs_Y 85 IIMQILVTVVPALEKLSK-EGEEGRRIINQYTRIGGIALGAFQGFFLATAFLGAEGGRFLLPGWSPGPFFWFVVVVTQVA 163 (434)
T ss_dssp HHHHHHHHHSHHHHHHHT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSSSTTBCTTCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcchhhhhh-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCccHHHHHHHHHHHHH
Confidence 999999999999999985 999999999999999999999999999998763 1 12 23 444467788999999
Q ss_pred HHHHHHHHHHhhhcccCCCchhHHHHHHHhhhhhHHHHHHHHHHhhc-CchHHHHHHHHHHHHHHHHHHhhccceEeeee
Q 010829 227 GSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQD-GNYIGLATIIISFILLVLGIVYVQEAERKIPI 305 (499)
Q Consensus 227 Gt~~l~WL~E~It~~GiGnG~SLiI~~~Ii~~lp~~i~~~~~~~~~~-~~~~~~li~~~~~liv~~~iV~l~~a~rrIPI 305 (499)
|++++|||||+|||||+|||+|++|++||++++|+.+.+.++....+ .++..+++.+++++++++++||+|++||||||
T Consensus 164 Gt~~lmwLgE~It~~GIGnGiSliI~~gIv~~lp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~vi~~vV~~~~~~rrIPv 243 (434)
T 2zjs_Y 164 GIALLLWMAERITEYGIGNGTSLIIFAGIVVEWLPQILRTIGLIRTGEVNLVAFLFFLAFIVLAFAGMAAVQQAERRIPV 243 (434)
T ss_dssp HHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHTHHHHHHHHHHTTTTTSSCHHHHHHHHHHHHHHHHHHHHHHHCEEEEEE
T ss_pred HHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHheeeEEEEee
Confidence 99999999999999999999999999999999999988876533221 14445455566678888999999999999999
Q ss_pred eecccccccCCCCCcccccceeeccCcchhHHHHHHhhhhHHHHHHhhc-hhHHHHHHHhcCCCCcchHHHHHHHHHHHH
Q 010829 306 NYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTG-IAALKKAAVALNPGGSFYLPTNILLIAFFN 384 (499)
Q Consensus 306 ~~~~r~~~~~~~~~~~~ylPiKln~aGvmPiIfassll~lp~~i~~~~~-~~~~~~~~~~l~p~~~~y~~~y~~Lii~Fs 384 (499)
||+||.+||+++.++++|+|+|+|++||||+|||+|++++|+++++++. ++|.+.+.++++|++++|.++|++++++||
T Consensus 244 qyakr~~gr~~~~g~~s~lPlKln~aGviPiIfassll~~p~~i~~~~~~~~~~~~~~~~l~~~~~~y~~~y~~lii~Fs 323 (434)
T 2zjs_Y 244 QYARKVVGGRVYGGQATYIPIKLNAAGVIPIIFAAAILQIPIFLAAPFQDNPVLQGIANFFNPTRPSGLFIEVLLVILFT 323 (434)
T ss_dssp EECC-------CCCCEEEEEEESSSCTHHHHHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHCSSSHHHHHHHHHHHHHHH
T ss_pred hhhhhhccCcccCCcceEEeeehhcccchHHHHHHHHHHHHHHHHHHhccchHHHHHHHHcCCCChHHHHHHHHHHHHHH
Confidence 9999988888888899999999999999999999999999999999764 457666778899999999999999999999
Q ss_pred HHHHHhccChHHHHHHHHHcCCccccccCChhHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHhcCcccccccccchhH
Q 010829 385 YYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVL 464 (499)
Q Consensus 385 ~f~s~i~~np~diAe~Lkk~G~~IpGiRpG~~T~~yL~kvi~r~t~~Gai~L~~ia~lP~ll~~~~~~~~~~~~gGTslL 464 (499)
|||+++++||||+||||||||++|||+||||+|+|||+|+++|+|++||+|++++|++|++++...+.+.+ ++||||+|
T Consensus 324 ~fyt~i~~np~diA~nLkk~G~~IpGiRpG~~T~~yL~~vi~rit~~Ga~~l~~ia~lp~~l~~~~~~~~~-~~gGTslL 402 (434)
T 2zjs_Y 324 YVYTAVQFDPKRIAESLREYGGFIPGIRPGEPTVKFLEHIVSRLTLWGALFLGLVTLLPQIIQNLTGIHSI-AFSGIGLL 402 (434)
T ss_dssp HHHHHCSSCHHHHHHHTTTTTEECTTBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCG-GGSSHHHH
T ss_pred HHHHHHccCHHHHHHHHHHCCCccCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCcccc-cccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998655344222 38999999
Q ss_pred HHHHHHHHHHHHHHHHHHHccCCCee
Q 010829 465 ILVGCATDTARKVQAEIISQKYKNIE 490 (499)
Q Consensus 465 I~Vgv~~~~~~qi~~~~~~~~Y~~~~ 490 (499)
|+|||++|++||+|+++.+++|+++.
T Consensus 403 I~VgV~ldt~~qi~s~~~~~~Y~~~~ 428 (434)
T 2zjs_Y 403 IVVGVALDTLRQVESQLMLRSYEGFL 428 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999999999983
No 2
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=100.00 E-value=2.1e-105 Score=844.70 Aligned_cols=410 Identities=38% Similarity=0.652 Sum_probs=354.7
Q ss_pred hhhhhc-CCchhHHHHHHHHHHHHHhccccccCCcchhhhccccc--cchhHHHHHhhcCCCCcccceeecCchHHHHHH
Q 010829 78 FGDFFK-GPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLD--QNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQ 154 (499)
Q Consensus 78 ~~~~~k-~~l~~Kil~Tl~~l~iyrlG~~IPlPGId~~~~~~~~~--~~~~l~~l~~fsGg~~~~~SLfsLGI~PyItAs 154 (499)
+.|+|| +++|+|++||++++++||+|+|||+||+|.++.++.++ +++.++++|+|+||+++|+|+|+|||+||||||
T Consensus 5 ~~~~~~~~~lr~kilfTl~~L~iyrlg~~IPlpGi~~~~~~~~~~~~~~~~~~~l~~~~GGa~~~~sifaLGI~PyItAs 84 (429)
T 3dl8_G 5 LKALFELKELRQKFIFTLLMFVIYRLGSHIPIPGINPEALRDFLKAFEGSVFALYDIFSGGNLGRLTVFALGVMPYISAS 84 (429)
T ss_dssp ---CCSCCCCHHHHHHHHHHHHHHHHHHHCSSCCCC---------------CCSSSSSSCCSSSCCCSSSSSHHHHHHHH
T ss_pred HHHHHcchhHHHHHHHHHHHHHHHHHHccCCCCCCCHHHHHHHhhhccccHHHHHHHHhCcccccccHHHHhhHHHHHHH
Confidence 678887 89999999999999999999999999999987754332 246788899999999999999999999999999
Q ss_pred HHHHHHhhhchhhHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------cccccchhHHHHHHHHHHH
Q 010829 155 IVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRP--------YVNDFSTDWVLTSVTLLTL 226 (499)
Q Consensus 155 II~QLL~~~~p~L~~l~k~ege~gr~k~~~~tr~ltl~ia~iQa~~~~~~~~~--------~~~~~~~~~~~~~vl~Lva 226 (499)
||||||+.++|+++|++|||||+||||+|++|||+|+++|++||++++.+++. ...+.+...+++++++|++
T Consensus 85 II~QLL~~~~P~l~~l~k~ege~gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~L~a 164 (429)
T 3dl8_G 85 IMMQLLTVAIPSLQRLAKEEGDYGRYKINEYTKYLTLFVATVQSLGIAFWIRGQVSPKGIPVVENPGISFILITVLTLVA 164 (429)
T ss_dssp HHHHHHHHHSSCSSSCSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCCCCSSSTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcHHHHHHHHHHHHH
Confidence 99999999999999999779999999999999999999999999999877642 1123455567888999999
Q ss_pred HHHHHHHHHHhhhcccCCCchhHHHHHHHhhhhhHHHHHHHHHHh-hcCchHHHHHHHHHHHHHHHHHHhhccceEeeee
Q 010829 227 GSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAF-QDGNYIGLATIIISFILLVLGIVYVQEAERKIPI 305 (499)
Q Consensus 227 Gt~~l~WL~E~It~~GiGnG~SLiI~~~Ii~~lp~~i~~~~~~~~-~~~~~~~~li~~~~~liv~~~iV~l~~a~rrIPI 305 (499)
|++++|||||+|||||+|||+|++|++||++++|+.+.+.+.... .+.++...++.+++++++++++||+|++||||||
T Consensus 165 Gt~~lmwL~E~It~~GiGnGiSliI~~gI~~~lp~~~~~~~~~~~~g~~~~~~~l~~l~~~l~vi~~vV~~~~~~rrIPv 244 (429)
T 3dl8_G 165 GTMFLVWIADRITEKGIGNGASLIIFAGIVANFPNAVIQFYEKVKTGDIGPLTLLLIIALIIAIIVGIVYVQEAERRIPI 244 (429)
T ss_dssp HHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHTTTTSSCCCCSSSCSSSCTHHHHHHHHHHHHHHHHHTCSCCCCCCCCC
T ss_pred HHHHHHHHHHHHhhcCcCcchHHHHHHHHHHHHHHHHHhHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHheeeEEEEEE
Confidence 999999999999999999999999999999999987644221100 0112334455666778888999999999999999
Q ss_pred eecccccccCCCCCcccccceeeccCcchhHHHHHHhhhhHHHHHHhhchhHHHHHHHhcCCCCcchHHHHHHHHHHHHH
Q 010829 306 NYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPGGSFYLPTNILLIAFFNY 385 (499)
Q Consensus 306 ~~~~r~~~~~~~~~~~~ylPiKln~aGvmPiIfassll~lp~~i~~~~~~~~~~~~~~~l~p~~~~y~~~y~~Lii~Fs~ 385 (499)
||+||..||+.+.++++|+|+|+|||||||+|||+|++++|++++++++++|...+.++++|++++|.++|+++|++|+|
T Consensus 245 qyakr~~g~~~~~g~~~~iPlKln~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~l~~~~~~y~~~y~~lii~Fs~ 324 (429)
T 3dl8_G 245 QYPGRQVGRQLYAGRKTYLPIKINPAGVIPIIFAQALLLIPSTLLNFVQNPFIKVIADMFQPGAIFYNFLYVTFIVFFTY 324 (429)
T ss_dssp BCSSSCBCCCCCCCCCCCCCCCCCCCCSSHHHHHHHHHHHHHHHHHSCSSCCCCTTTTTTTTTHHHHHHHHHHHHHHHHH
T ss_pred EEchhhccccccCCCCceeeeeeccccchHHHHHHHHHHHHHHHHHHcchHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 99999989888888999999999999999999999999999999998765565556677888889999999999999999
Q ss_pred HHHHhccChHHHHHHHHHcCCccccccCChhHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHhcCcccccccccchhHH
Q 010829 386 YYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLI 465 (499)
Q Consensus 386 f~s~i~~np~diAe~Lkk~G~~IpGiRpG~~T~~yL~kvi~r~t~~Gai~L~~ia~lP~ll~~~~~~~~~~~~gGTslLI 465 (499)
||+++++||||+||||||||++|||+||||+|+|||+|+++|+|++||+|++++|++|++++...+.+. .+||||+||
T Consensus 325 fy~~i~~np~diA~~lkk~G~~IpGiRpG~~T~~yL~~vi~rit~~Ga~~L~~iavlp~~~~~~~g~~~--~~gGTslLI 402 (429)
T 3dl8_G 325 FYTAVLINPVELAENLHKAGAFIPGVRPGQDTVKYLERIINRLIFFGALFLSVIALIPILISVWFNIPF--YFGGTTALI 402 (429)
T ss_dssp HHHTCTTHHHHHHHTCCCCBSSSBCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCSC--CCSTHHHHH
T ss_pred HHHHHccCHHHHHHHHHHCCCcCCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCc--cccchhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999876555542 379999999
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCe
Q 010829 466 LVGCATDTARKVQAEIISQKYKNI 489 (499)
Q Consensus 466 ~Vgv~~~~~~qi~~~~~~~~Y~~~ 489 (499)
+||+++|++||+|+++.++||+++
T Consensus 403 ~Vgv~l~~~~qi~s~l~~~~Y~g~ 426 (429)
T 3dl8_G 403 VVGVALDTFRQIETYLIQKKYKSY 426 (429)
T ss_dssp HHHHHHHHHHHHHHHCCCCCTTCS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999997
No 3
>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=100.00 E-value=1.2e-103 Score=831.04 Aligned_cols=404 Identities=34% Similarity=0.600 Sum_probs=350.1
Q ss_pred hhhhhc-CCchhHHHHHHHHHHHHHhccccccCCcchhhhccccc-----c--chhHHHHHhhcCCCCcccceeecCchH
Q 010829 78 FGDFFK-GPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLD-----Q--NSLLSTLDSFSGGGIGRLGICSLGIVP 149 (499)
Q Consensus 78 ~~~~~k-~~l~~Kil~Tl~~l~iyrlG~~IPlPGId~~~~~~~~~-----~--~~~l~~l~~fsGg~~~~~SLfsLGI~P 149 (499)
+.|.|| +++|+|++||++++++||+|+|||+||+|.+++++.++ + ++.++++|+|+||+++|+|+|+|||+|
T Consensus 5 ~~~~~~~~~lr~kilfTl~~L~iyrlgs~IPlPGi~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Ggal~~~SifaLGI~P 84 (431)
T 3din_C 5 FKNAFKIPELRDRIIFTFLALIVFRMGIYIPVPGLNLEAWGEIFRRIAETAGVAGILSFYDVFTGGALSRFSVFTMSVTP 84 (431)
T ss_dssp ---CCSCSCCSSHHHHHHHHHHHHHHHHSCSSCCCCC--------------------CTTHHHHCSSSSCCCSSSSSHHH
T ss_pred HHHHHcChhHHHHHHHHHHHHHHHHHHccCCCCCcCHHHHHHHHhhhccccccccHHHHHHHHcCcccccccHHHHhhHH
Confidence 678888 79999999999999999999999999999988654332 1 457889999999999999999999999
Q ss_pred HHHHHHHHHHHhhhchhhHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----c-cccc-hhHHHHHHHH
Q 010829 150 FINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPY----V-NDFS-TDWVLTSVTL 223 (499)
Q Consensus 150 yItAsII~QLL~~~~p~L~~l~k~ege~gr~k~~~~tr~ltl~ia~iQa~~~~~~~~~~----~-~~~~-~~~~~~~vl~ 223 (499)
|||||||||||+.++|+++|++| |||+||||+|++|||+|+++|++||++++.+++.. . .+.+ ...+++++++
T Consensus 85 yItAsII~QLL~~~iP~l~~l~k-ege~gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ 163 (431)
T 3din_C 85 YITASIILQLLASVMPSLKEMLR-EGEEGRKKFAKYTRRLTLLIGGFQAFFVSFSLARSNPDMVAPGVNVLQFTVLSTMS 163 (431)
T ss_dssp HHHHHHHHHHHHHHSCSSSSCSC-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHhcc-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccCCchHHHHHHHHHH
Confidence 99999999999999999999997 99999999999999999999999999998776321 0 2334 5567888999
Q ss_pred HHHHHHHHHHHHHhhhcccCCCchhHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHhhccceEee
Q 010829 224 LTLGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKI 303 (499)
Q Consensus 224 LvaGt~~l~WL~E~It~~GiGnG~SLiI~~~Ii~~lp~~i~~~~~~~~~~~~~~~~li~~~~~liv~~~iV~l~~a~rrI 303 (499)
|++|++++|||||+|||||+|||+|++|++||++++|+.+.+.+. .+.++...++.+++++++++++||+|++||||
T Consensus 164 L~aGt~~lmwL~E~It~~GiGnGiSliI~~gI~~~lp~~~~~~~~---~~~~~~~~l~~l~~~l~vi~~vV~~~~~~rrI 240 (431)
T 3din_C 164 MLAGTMFLLWLGERITEKGIGNGISILIFAGIVARYPSYIRQAYL---GGLNLLEWIFLIAVALITIFGIILVQQAERRI 240 (431)
T ss_dssp HHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHHSTTSSSCCSS---CCSCTHHHHHHHHHHHHHHHHHTTTCCBCCCC
T ss_pred HHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHhc---ccccHHHHHHHHHHHHHHHHHHHhheeeEEEE
Confidence 999999999999999999999999999999999999987644221 12233444566667788889999999999999
Q ss_pred eeeecccccccCCCCCcccccceeeccCcchhHHHHHHhhhhHHHHHHhhchhHHHHHHHhcCCCCcchHHHHHHHHHHH
Q 010829 304 PINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPGGSFYLPTNILLIAFF 383 (499)
Q Consensus 304 PI~~~~r~~~~~~~~~~~~ylPiKln~aGvmPiIfassll~lp~~i~~~~~~~~~~~~~~~l~p~~~~y~~~y~~Lii~F 383 (499)
||||+||..||+++.++++|+|+|+|||||||+|||+|++++|+++++++++.| ..++++|.+++|.++|+++|++|
T Consensus 241 Pvqyakr~~g~~~~~g~~~~iPlKln~aGvmPiIfassll~~p~~i~~~~~~~~---~~~~~~~~~~~y~~~y~~lii~F 317 (431)
T 3din_C 241 TIQYARRVTGRRVYGGASTYLPIKVNQGGVIPIIFASAIVSIPSAIASITNNET---LKNLFRAGGFLYLLIYGLLVFFF 317 (431)
T ss_dssp CCCBTTTBCCCCCCCCCCCCCCCCCCCCCSSHHHHHHHHHHHHHHHTTSSTTCC---CCCCSSTTHHHHHHHHHHHHHHH
T ss_pred EEEechhhccccccCCCcceeeeeecccCchHHHHHHHHHHHHHHHHHHcchHH---HHHHcCCCcHHHHHHHHHHHHHH
Confidence 999999999998888899999999999999999999999999999998874323 23457788889999999999999
Q ss_pred HHHHHHhccChHHHHHHHHHcCCccccccCChhHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHhcCcccccccccchh
Q 010829 384 NYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSV 463 (499)
Q Consensus 384 s~f~s~i~~np~diAe~Lkk~G~~IpGiRpG~~T~~yL~kvi~r~t~~Gai~L~~ia~lP~ll~~~~~~~~~~~~gGTsl 463 (499)
+|||+++++||||+||||||||++|||+||||+|+|||+|+++|+|++||+|++++|++|++++...+.+. .+||||+
T Consensus 318 s~fy~~i~~np~diA~~lkk~G~~IpGiRpG~~T~~yL~~vi~rit~~Ga~~L~~iavlp~~~~~~~g~~~--~~gGTsl 395 (431)
T 3din_C 318 TYFYSVVIFDPREISENIRKYGGYIPGLRPGRSTEQYLHRVLNRVTFIGAVFLVVIALLPYLVQGAIKVNV--WIGGTSA 395 (431)
T ss_dssp HHHHHTCTTHHHHHTTSCCCCBCSSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSC--CTTHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHCCCcCCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCc--cccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999876555542 3799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCCee
Q 010829 464 LILVGCATDTARKVQAEIISQKYKNIE 490 (499)
Q Consensus 464 LI~Vgv~~~~~~qi~~~~~~~~Y~~~~ 490 (499)
||+|||++|++||+|+++.++||+++.
T Consensus 396 LI~Vgv~l~~~~qi~s~~~~~~Y~g~~ 422 (431)
T 3din_C 396 LIAVGVALDIIQQMETHMVMRHYEGFI 422 (431)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCSSTTC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999999999983
No 4
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Y 2aki_Y
Probab=100.00 E-value=1.1e-103 Score=832.21 Aligned_cols=404 Identities=33% Similarity=0.619 Sum_probs=357.9
Q ss_pred CCchhHHHHHHHHHHHHHhccccccCCcchhhhccccc--cchhHHHHHhhcCCCCcccceeecCchHHHHHHHHHHHHh
Q 010829 84 GPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLD--QNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLA 161 (499)
Q Consensus 84 ~~l~~Kil~Tl~~l~iyrlG~~IPlPGId~~~~~~~~~--~~~~l~~l~~fsGg~~~~~SLfsLGI~PyItAsII~QLL~ 161 (499)
+++|+|++||++++++||+|+|||+||+|.++..+.++ ++++++++|+|+||+++|+|+|+|||+||||||||||||+
T Consensus 10 ~~lr~kilfTl~~L~iyrlgs~IPlPGi~~~~~~~~~~~~~~~~~~~~~~fsGGal~~~SifaLGI~PyItAsII~QLL~ 89 (435)
T 3j01_A 10 GELKRRLLFVIGALIVFRIGSFIPIPGIDAAVLAKLLEQQRGTIIEMFNMFSGGALSRASIFALGIMPYISASIIIQLLT 89 (435)
T ss_dssp CSSSHHHHHHHTHHHHHHHHHSCSTTCCSSSSCCSSCSCSCSCCSSSHHHHTCCSSSCCCCSSCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCCcCHHHHHHHHhhccccHHHHHHHHcccccccccHHHHchHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999987765433 2358889999999999999999999999999999999999
Q ss_pred hhchhhHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------cccccchhHHHHHHHHHHHHHHHHHHHH
Q 010829 162 QINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRP------YVNDFSTDWVLTSVTLLTLGSAFTTYIG 235 (499)
Q Consensus 162 ~~~p~L~~l~k~ege~gr~k~~~~tr~ltl~ia~iQa~~~~~~~~~------~~~~~~~~~~~~~vl~LvaGt~~l~WL~ 235 (499)
.++|+++|++| |||+||||+|++|||+|+++|++||++++.+++. ...+.+...+++++++|++|++++||||
T Consensus 90 ~~ip~l~~l~k-ege~gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~L~aGt~~lmwL~ 168 (435)
T 3j01_A 90 VVHPTLAEIKK-EGESGRRKISQYTRYGTLVLAIFQSIGIATGLPNMPGMQGLVINPGFAFYFTAVVSLVTGTMFLMWLG 168 (435)
T ss_dssp HHCSSSSSCSC-CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSSCCCSCCCCSCSCSTTHHHHHHHHHHHHHHHHH
T ss_pred HhcccHHHhhh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999997 8999999999999999999999999999877642 1123344456778899999999999999
Q ss_pred HhhhcccCCCchhHHHHHHHhhhhhHHHHHHHHHHh-hcCchHHHHHHHHHHHHHHHHHHhhccceEeeeeeeccccccc
Q 010829 236 ERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAF-QDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSR 314 (499)
Q Consensus 236 E~It~~GiGnG~SLiI~~~Ii~~lp~~i~~~~~~~~-~~~~~~~~li~~~~~liv~~~iV~l~~a~rrIPI~~~~r~~~~ 314 (499)
|+|||||+|||+|++|++||++++|+.+.+.++... ...+...+++.+++++++++++||+|++||||||||+||..||
T Consensus 169 E~It~~GiGnGiSLiI~~gI~~~lp~~~~~~~~~~~~~~~~~~~~l~~~~~~l~vi~~vV~~~~~~rrIPvqyakr~~g~ 248 (435)
T 3j01_A 169 EQITERGIGNGISIIIFAGIVAGLPPAIAHTIEQARQGDLHFLVLLLVAVLVFAVTFFVVFVERGQRRIVVNYAKRQQGR 248 (435)
T ss_dssp HHSTTSCCSSSHHHHHHHHHHHHSSTTSSSCCCSSSSTTSSSHHHHHHHHHHHHHHHHTTCCCCCSCCCCCCCCCCCSSC
T ss_pred HHHHhcCcccccHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhheeEEEEEEEehhhhccc
Confidence 999999999999999999999999987654332111 1123344455666677888999999999999999999999999
Q ss_pred CCCCCcccccceeeccCcchhHHHHHHhhhhHHHHHHhhch----hHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHh
Q 010829 315 SGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGI----AALKKAAVALNPGGSFYLPTNILLIAFFNYYYTFL 390 (499)
Q Consensus 315 ~~~~~~~~ylPiKln~aGvmPiIfassll~lp~~i~~~~~~----~~~~~~~~~l~p~~~~y~~~y~~Lii~Fs~f~s~i 390 (499)
+.+.++++|+|+|+|||||||+|||+|++++|+++++++++ .|...+.++++|++|+|.++|++++++|||||+++
T Consensus 249 ~~~~g~~s~iPlKln~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~lii~F~~fyt~i 328 (435)
T 3j01_A 249 RVYAAQSTHLPLKVNMAGVIPAIFASSIILFPATIASWFGGGTGWNWLTTISLYLQPGQPLYVLLYASAIIFFCFFYTAL 328 (435)
T ss_dssp CCCCCCCCCCSCCCCCSSCSCSSHHHHHHHHHHHHHHHSSSCCCSSCCSSSSCCCCSSGGGGTHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCceeeeeeccccchHHHHHHHHHHHHHHHHHHccCCcchhHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999997643 24444556788889999999999999999999999
Q ss_pred ccChHHHHHHHHHcCCccccccCChhHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHhcCcccccccccchhHHHHHHH
Q 010829 391 QLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCA 470 (499)
Q Consensus 391 ~~np~diAe~Lkk~G~~IpGiRpG~~T~~yL~kvi~r~t~~Gai~L~~ia~lP~ll~~~~~~~~~~~~gGTslLI~Vgv~ 470 (499)
++||||+||||||||++|||+|||++|+|||+|+++|+|++||+|++++|++|++++...+.+. .+||||+||+|||+
T Consensus 329 ~~np~diA~~lkk~G~~IpGiRpG~~T~~yL~~vi~rit~~Ga~~L~~iavlP~~l~~~~~~~~--~~gGTslLI~VgV~ 406 (435)
T 3j01_A 329 VFNPRETADNLKKSGAFVPGIRPGEQTAKYIDKVMTRLTLVGALYITFICLIPEFMRDAMKVPF--YFGGTSLLIVVVVI 406 (435)
T ss_dssp SSCTTHHHHHTTSTTCSSSCCSSSSSSCSHHHHHHHHHCHHHHHHHHHHHHHHHHTTSCCSSSS--SSCCHHHHHTHHHH
T ss_pred ccCHHHHHHHHHHcCCcCCCcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCe--ecccHhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999876555543 27999999999999
Q ss_pred HHHHHHHHHHHHHccCCCee
Q 010829 471 TDTARKVQAEIISQKYKNIE 490 (499)
Q Consensus 471 ~~~~~qi~~~~~~~~Y~~~~ 490 (499)
+|++||+|+++.++|||++.
T Consensus 407 ldt~~qi~s~l~~~~Y~g~~ 426 (435)
T 3j01_A 407 MDFMAQVQTLMMSSQYESAL 426 (435)
T ss_dssp HHHHHHHHHHTSCCCCCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999983
No 5
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1 PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A
Probab=100.00 E-value=3.5e-93 Score=752.44 Aligned_cols=381 Identities=19% Similarity=0.194 Sum_probs=304.8
Q ss_pred cCCchhHHHHHHHHHHHHHhccccccCCcchhhhccccccchhHHHHHhhcCCCCcccceeecCchHHHHHHHHHHHHhh
Q 010829 83 KGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQ 162 (499)
Q Consensus 83 k~~l~~Kil~Tl~~l~iyrlG~~IPlPGId~~~~~~~~~~~~~l~~l~~fsGg~~~~~SLfsLGI~PyItAsII~QLL~~ 162 (499)
++++|+|++||++++++||+|+|||+||+|.++.+ .++++|+|+ +++|+|+|+|||+||||||||||||++
T Consensus 20 ~~~lr~kil~Tl~~L~iyr~gs~IPlpGi~~~~~~-------~~~~~~~~~--a~~~~sifaLGI~PyItAsII~QLL~g 90 (436)
T 1rh5_A 20 EITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQIPA-------IFEFWQTIT--ASRIGTLITLGIGPIVTAGIIMQLLVG 90 (436)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTTSBCCCSSCCCCS-------CCTTHHHHH--TCCTTBTTTTTTHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHH-------HHHHHHHhh--ccccchHHHHccHHHHHHHHHHHHHhh
Confidence 47999999999999999999999999999986542 344677778 458999999999999999999999964
Q ss_pred hchhhHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 010829 163 INPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLK 242 (499)
Q Consensus 163 ~~p~L~~l~k~ege~gr~k~~~~tr~ltl~ia~iQa~~~~~~~~~~~~~~~~~~~~~~vl~LvaGt~~l~WL~E~It~~G 242 (499)
.++.+++| |||+||+|+|++|||+|+++|++||++++.+. .+ .+.+..+.++++++|++|++++|||||+|||||
T Consensus 91 --~~~i~l~k-ege~gr~ki~~~tR~lti~la~iQa~~~~~~g-~~-~~~~~~~~~~~vl~L~~Gt~~lmwL~E~It~~G 165 (436)
T 1rh5_A 91 --SGIIQMDL-SIPENRALFQGCQKLLSIIMCFVEAVLFVGAG-AF-GILTPLLAFLVIIQIAFGSIILIYLDEIVSKYG 165 (436)
T ss_dssp --HTTSCCCC-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred --Cceeeecc-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cc-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 23337775 99999999999999999999999999999863 22 234455677889999999999999999999999
Q ss_pred CCCchhHHHHHHHhhhhhHHHHH-------HHHHHhhc-CchHHHHHHHHHHHHHHHHHHhhccceEeeeeeeccccccc
Q 010829 243 LGNGTSLLIFTSIISYLPASFGR-------TVAEAFQD-GNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSR 314 (499)
Q Consensus 243 iGnG~SLiI~~~Ii~~lp~~i~~-------~~~~~~~~-~~~~~~li~~~~~liv~~~iV~l~~a~rrIPI~~~~r~~~~ 314 (499)
+|||+|++|++||++++|+.+.+ .++..... .+..+ ++.+++++++++++||+|++||||||||+| .+
T Consensus 166 iGnGiSLiI~~gI~~~lp~~~~~~~G~i~~~~~~~~~~~~~~~~-l~~l~~~l~v~~~vV~~~~~~rrIPvqyak-~~-- 241 (436)
T 1rh5_A 166 IGSGIGLFIAAGVSQTIFVGALGPEGYLWKFLNSLIQGVPNIEY-IAPIIGTIIVFLMVVYAECMRVEIPLAHGR-IK-- 241 (436)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHTTTTCCCGGG-THHHHHHHHHHHHHHHHTTCEEEEECCCSS-ST--
T ss_pred cccccHHHHHHHHHHHHHHHHhcccchHHHHHHHHhcccchHHH-HHHHHHHHHHHHHHHhhcceEEEEEEEecc-cC--
Confidence 99999999999999999997766 55433221 23333 455556778888999999999999999997 43
Q ss_pred CCCCCcccccceeeccCcchhHHHHHHhhhhHHHHHHhhch---hHHH---------HHHHhcCC-----------CC-c
Q 010829 315 SGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGI---AALK---------KAAVALNP-----------GG-S 370 (499)
Q Consensus 315 ~~~~~~~~ylPiKln~aGvmPiIfassll~lp~~i~~~~~~---~~~~---------~~~~~l~p-----------~~-~ 370 (499)
++++|+|+|+||+||||+|||+|++++|++++++.++ +|.. .+.++++| .+ +
T Consensus 242 ----g~~~~lPlKln~aGviPiIfassll~~p~~i~~~~~~~~~~~~g~~~~~~~~~gl~yyl~pp~~~~~~~~~p~~~~ 317 (436)
T 1rh5_A 242 ----GAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRMGIPILGHYEGGRAVDGIAYYLSTPYGLSSVISDPIHAI 317 (436)
T ss_dssp ----TCCCEEEEESCTTCSHHHHHHHHHHHHHHHHHHHHHTTSCCTTCCBCSSSBSSSTTGGGCCCCSSSCCCSCHHHHH
T ss_pred ----CccceeeeecccccchHHHHHHHHHHHHHHHHHHhcccCcchhhhcccccccccchhhcCChhHHHHHHhCCccch
Confidence 6799999999999999999999999999999987631 2321 12344444 12 6
Q ss_pred chHHHHHHHHHHHHHHHHHh-ccChHHHHHHHHHcCCccccccCChh-HHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHH
Q 010829 371 FYLPTNILLIAFFNYYYTFL-QLDPDDVSEQLKRQGASIPLVRPGKS-TAAFLKTVLSRISVLGSVFLAILAAGPAVIEQ 448 (499)
Q Consensus 371 ~y~~~y~~Lii~Fs~f~s~i-~~np~diAe~Lkk~G~~IpGiRpG~~-T~~yL~kvi~r~t~~Gai~L~~ia~lP~ll~~ 448 (499)
+|.++|+++|++|+|||+++ ++||||+||||||||++|||+|||++ |+|||+|+++|+|++||+|++++|++|++++
T Consensus 318 ~y~~~~~~lii~Fs~fy~~is~~np~diA~~Lkk~G~~IpGiRpG~~tt~~yL~~vi~rit~~Ga~~l~~ia~lp~~l~- 396 (436)
T 1rh5_A 318 VYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKSEKAIEHRLKRYIPPLTVMSSAFVGFLATIANFIG- 396 (436)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHCCCcCCCcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 78999999999999999999 89999999999999999999999999 7999999999999999999999999999964
Q ss_pred hcCcccccccccchhHHHHHHHHHHHHHHHHHHHHccCCCee-eec
Q 010829 449 TTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIE-FYD 493 (499)
Q Consensus 449 ~~~~~~~~~~gGTslLI~Vgv~~~~~~qi~~~~~~~~Y~~~~-~~~ 493 (499)
.. .||||+||+||+++|++||+++|+.+|+|+.++ |++
T Consensus 397 -----~~--~gGTslLI~VgV~~~~~~qi~~~~~~~~Y~~l~~~~g 435 (436)
T 1rh5_A 397 -----AL--GGGTGVLLTVSIVYRMYEQLLRERTSELHPAIAKLLN 435 (436)
T ss_dssp -----CT--TCSHHHHHHHHHHHHHHHHHHTTCC------------
T ss_pred -----Hh--cCchhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHcc
Confidence 22 389999999999999999999999999999764 653
No 6
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} SCOP: f.41.1.0
Probab=100.00 E-value=9.5e-93 Score=756.66 Aligned_cols=376 Identities=21% Similarity=0.285 Sum_probs=275.4
Q ss_pred CCchhHHHHHHHHHHHHHhccccccCCcchhhhccccccchhHHHHHhhcCCCCcccceeecCchHHHHHHHHHHHHhhh
Q 010829 84 GPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQI 163 (499)
Q Consensus 84 ~~l~~Kil~Tl~~l~iyrlG~~IPlPGId~~~~~~~~~~~~~l~~l~~fsGg~~~~~SLfsLGI~PyItAsII~QLL~~~ 163 (499)
+++|+|++||++++++||+|++||+||+|.++. +.++++|+|+|| +|+|+|+|||+||||||||||||+.
T Consensus 24 ~~lr~Kil~Tl~~L~iyrlgs~IPlpGi~~~~~-------~~~~~l~~~~Gg--~~~SifaLGI~PyITASII~QLL~~- 93 (482)
T 3mp7_A 24 VPLRERFMWTGVALILYYVLAEIPVYGIPERIQ-------DYFQFLRVVLAG--RNGSILTLGIGPIVTAGIILQLLVG- 93 (482)
T ss_dssp --CTTTHHHHHHHHHHHHHHHHSBCTTCCSSCC-------CSCSSTTTTTCS--CTTBTTSSTTHHHHHHHHHTTC----
T ss_pred ccHHHHHHHHHHHHHHHHHHhhCCCCCcCcccc-------cHHHHHHHhcCC--CcccHHHHhhHHHHHHHHHHHHHHh-
Confidence 799999999999999999999999999998632 355688999999 5999999999999999999999997
Q ss_pred chhhHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc---cchhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010829 164 NPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVND---FSTDWVLTSVTLLTLGSAFTTYIGERISD 240 (499)
Q Consensus 164 ~p~L~~l~k~ege~gr~k~~~~tr~ltl~ia~iQa~~~~~~~~~~~~~---~~~~~~~~~vl~LvaGt~~l~WL~E~It~ 240 (499)
.++++++| |||+||||+|++|||+|+++|++||++++.++. ++.. .+...+++++++|++|++++|||||+|||
T Consensus 94 -~~l~~l~k-ege~gR~k~~~~tR~lti~la~iQa~~~v~~~~-~~~~~~~~~~~~~~~ivl~L~aGt~~lmwL~E~It~ 170 (482)
T 3mp7_A 94 -SEIIKLDL-ANPEDRRFYQALQRVFSVFMCFFEAAVWILGGA-FGRVGVDVTYAIAVLMILQLAMGGIVLIILDELVSK 170 (482)
T ss_dssp ----------------------CHHHHHHHHHHHHHHHHHSSS-SSCC------CTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ccHHHHhh-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 59999986 899999999999999999999999999998763 2211 23345778899999999999999999999
Q ss_pred ccCCCchhHHHHHHHhhhhhHHHHHHH-----------------------HHHhhcCc--------hH--HHHHHHHHHH
Q 010829 241 LKLGNGTSLLIFTSIISYLPASFGRTV-----------------------AEAFQDGN--------YI--GLATIIISFI 287 (499)
Q Consensus 241 ~GiGnG~SLiI~~~Ii~~lp~~i~~~~-----------------------~~~~~~~~--------~~--~~li~~~~~l 287 (499)
||+|||+|++|++||++++|+.+.+.+ +.. .++. +| + ++.+++++
T Consensus 171 ~GiGnGiSLiI~agI~~~lp~~~~~~~~~~~~~~~~~~~~e~~g~~~~~~~~~-~~~~l~~~~~~~lp~~~-l~~l~~~l 248 (482)
T 3mp7_A 171 WGIGSGISLFIAAGVSQTILTRSLNPLTDPNIIDPLTGQPAIVGAIPYFIQHI-LKGDLWGAIYRGGSAPD-MLSVVATI 248 (482)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHSCCCCCCC---CCSSSCCCSCHHHHHHHHH-HHCCSCSSCCCSSSSCC-HHHHHHHH
T ss_pred cCcccccHHHHHHHHHHHHHHHHHhhhhcccccccccccccccchHHHHHHHH-hcchhhHHHhhccchhH-HHHHHHHH
Confidence 999999999999999999998754321 000 1110 01 2 44555677
Q ss_pred HHHHHHHhhccceEeeeeeecccccccCCCCCcccccceeeccCcchhHHHHHHhhhhHHHHHHhhch---hHHH-----
Q 010829 288 LLVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGI---AALK----- 359 (499)
Q Consensus 288 iv~~~iV~l~~a~rrIPI~~~~r~~~~~~~~~~~~ylPiKln~aGvmPiIfassll~lp~~i~~~~~~---~~~~----- 359 (499)
++++++||+|++||||||||+| .+ +++|+|+|+|||||||+|||+|++++|+++++++.+ +|+.
T Consensus 249 ~v~~~vV~~q~~~rrIPvqyak-~~-------~~~~iPiKln~aGviPiIfassll~~p~~i~~~~~~~~~~~l~~~~~~ 320 (482)
T 3mp7_A 249 VVFFIVVYFESMRVEIPLGYRG-VT-------VRGSYPIRFLYVSNIPIILTFALYANIQLWARVLDRLGHPWLGRFDPT 320 (482)
T ss_dssp HHHHHHHHHHHCCEEC--------------------CEECSSSSTTHHHHHHHHHHHHHHHHHHHHHTTSCCSSBCCCCT
T ss_pred HHHHHhheeEeeEEEEEEEecc-cc-------ccceeeEeecccCchHHHHHHHHHHHHHHHHHHhhhccchhhhhhccc
Confidence 7889999999999999999986 32 589999999999999999999999999999987632 1221
Q ss_pred ------HHHHhcCCC--------Cc----chHHHHHHHHHHHHHHHHHh-ccChHHHHHHHHHcCCccccccCChh-HHH
Q 010829 360 ------KAAVALNPG--------GS----FYLPTNILLIAFFNYYYTFL-QLDPDDVSEQLKRQGASIPLVRPGKS-TAA 419 (499)
Q Consensus 360 ------~~~~~l~p~--------~~----~y~~~y~~Lii~Fs~f~s~i-~~np~diAe~Lkk~G~~IpGiRpG~~-T~~ 419 (499)
.+.++++|. +| +|.++|+++|++|+|||+++ ++||||+||||||||++|||+||||+ |+|
T Consensus 321 ~~~~~~g~~~~l~p~~s~~~~~~~p~~~~~Y~~~~~~lii~Fs~fy~~is~~np~diA~nlkk~G~~IpGiRpG~~tt~~ 400 (482)
T 3mp7_A 321 TGSPISGFVLYVIPPRNIFSVIDNPVRAIVYLILTVIFSLLFGYLWVELTGLDARSIARQLQRAGLQIPGFRRDPRTLEK 400 (482)
T ss_dssp TSCCCCBSGGGSCCCSSSTHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHSSTTGGGCCC--------CCTTTTTTSTTCC
T ss_pred ccccchhHHHHhCCcccHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHcCCccCCcCCCchhHHH
Confidence 124456553 23 58889999999999999999 99999999999999999999999997 799
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHhcCcccccccccchhHHHHHHHHHHHHHHHHHHHHccCCCee
Q 010829 420 FLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIE 490 (499)
Q Consensus 420 yL~kvi~r~t~~Gai~L~~ia~lP~ll~~~~~~~~~~~~gGTslLI~Vgv~~~~~~qi~~~~~~~~Y~~~~ 490 (499)
||+|+++|+|++||+|++++|++|++++ .. .||||+||+||+++|++||+++|+.+++|++++
T Consensus 401 yL~~vi~rit~~Ga~~L~~iavlp~~l~------~~--ggGTslLI~VgV~~~~~~qi~s~~~~~~Y~~l~ 463 (482)
T 3mp7_A 401 VLQRYIPYVTFWGSLTVALIAVLADFLG------AL--GTGTGILLTVGILYRFYEEIAREQITEMFPALR 463 (482)
T ss_dssp ------CTHHHHHHHHHHHHHHHHHHHT------CS--SCSHHHHHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHh------cc--CCceeeeeeHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 9999999999999999999999999975 22 389999999999999999999999999999885
No 7
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A
Probab=100.00 E-value=4.9e-89 Score=729.33 Aligned_cols=377 Identities=16% Similarity=0.170 Sum_probs=317.6
Q ss_pred cCCchhHHHHHHHHHHHHHhccccccCCcchhhhccccccchhHHHHHhhcCCCCcccceeecCchHHHHHHHHHHHHhh
Q 010829 83 KGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQ 162 (499)
Q Consensus 83 k~~l~~Kil~Tl~~l~iyrlG~~IPlPGId~~~~~~~~~~~~~l~~l~~fsGg~~~~~SLfsLGI~PyItAsII~QLL~~ 162 (499)
++++|+|++||++++++||+ +|||+||||.+++. +.++.+.++|+|+| ++|+|+|+|||+||||||||||||+.
T Consensus 26 ~~~lr~Kil~Tl~~L~iyri-s~IPlpGi~~~~~~---~~~~~~~~~~~~~a--~~~~sifaLGI~PyItASII~QLL~g 99 (490)
T 2ww9_A 26 KLPFDDKIVYTIFAGLIYLF-AQFPLVGLPKATTP---NVNDPIYFLRGVFG--CEPRTLLEFGLFPNISSGLILQLLAG 99 (490)
T ss_dssp CCCSHHHHHHHHHHHHHTTC-CSSCCSCHHHHTTT---CSSCCCTTTHHHHT--CCSSSTTSSTTHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHH-HhcCCCCcCHHHHh---cccCHHHHHHHHHc--ccccHHHHHhhHHHHHHHHHHHHHhh
Confidence 46899999999999999999 99999999998651 12345567888884 58999999999999999999999964
Q ss_pred hchhhHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHhhhc-c
Q 010829 163 INPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISD-L 241 (499)
Q Consensus 163 ~~p~L~~l~k~ege~gr~k~~~~tr~ltl~ia~iQa~~~~~~~~~~~~~~~~~~~~~~vl~LvaGt~~l~WL~E~It~-~ 241 (499)
.++.+++| |||+||||+|++|||+|+++|++||++++.++ .++.+.+..++++++++|++|++++|||||+||| |
T Consensus 100 --~~iipl~k-ege~gR~k~~~~tR~lti~la~iQa~~~~~~~-~~~~~~~~~~~~~ivl~L~~Gt~~lmwLgE~It~G~ 175 (490)
T 2ww9_A 100 --LKVIKVNF-KIQSDRELFQSLTKVFAIVQYVILTNIFIFAG-YFGDDLSVVQIGLINFQLVGAGIFTTLLAEVIDKGF 175 (490)
T ss_dssp --HTSSCCCT-TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CSSCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred --Cccccccc-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 12223665 99999999999999999999999999999865 3334455556778899999999999999999999 9
Q ss_pred cCCCchhHHHHHHHhhhhhHHHH--------------------HHHHHH-hhc----Cc---------hHHHHHHHHHHH
Q 010829 242 KLGNGTSLLIFTSIISYLPASFG--------------------RTVAEA-FQD----GN---------YIGLATIIISFI 287 (499)
Q Consensus 242 GiGnG~SLiI~~~Ii~~lp~~i~--------------------~~~~~~-~~~----~~---------~~~~li~~~~~l 287 (499)
|+|||+|++|++|||+++|+.+. +.++.. .+. ++ +++ ++.+++++
T Consensus 176 GIGnGiSLiI~agI~~~lp~~~~s~~~~~~~~~~~~e~~G~~~~~~~~~~~~~~~~~~~l~~~~~r~~lp~-l~~l~~~l 254 (490)
T 2ww9_A 176 GFSSGAMIINTVVIATNLVADTFGVSQIKVGEDDQTEAQGALINLIQGLRSKHKTFIGGIISAFNRDYLPN-LTTTIIVL 254 (490)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHTCCCCCCCCSSCCCSCCCHHHHHHHHHHCCCSSCCCSCCCCCSSSSCCS-HHHHHHHH
T ss_pred CcccccHHHHHHHHHHHHHHHHhccccccccccccccccchHHHHHHHHhhcccccccchhhHHhhccccH-HHHHHHHH
Confidence 99999999999999999998764 444433 111 11 123 44555677
Q ss_pred HHHHHHHhhccceEeeeeeecccccccCCCCCcccccceeeccCcchhHHHHHHhhhhHHHHHH----hhc----h----
Q 010829 288 LLVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLAR----FTG----I---- 355 (499)
Q Consensus 288 iv~~~iV~l~~a~rrIPI~~~~r~~~~~~~~~~~~ylPiKln~aGvmPiIfassll~lp~~i~~----~~~----~---- 355 (499)
++++++||+|++||||||||+|| + ++++|+|+|+||+||||+|||+|++++|+++++ +++ +
T Consensus 255 ~vi~~vV~~q~~~rrIPIqyak~-~------g~~s~lPlKln~aGviPiIFassll~~p~~i~~~~~~~~~~~~~~~~~~ 327 (490)
T 2ww9_A 255 AIAIIVCYLQSVRVELPIRSTRA-R------GTNNVYPIKLLYTGCLSVLFSYTILFYIHIFAFVLIQLVAKNEPTHIIC 327 (490)
T ss_dssp HHHHHHHHHTTCCEECCCBCSSS-S------SBCCCCEECHHHHTHHHHHHHHHHHHHCSSSCSTTTHHHHHCCCCSSSC
T ss_pred HHHHHHheeeeeEEEEEEEEccc-C------CcCceeeeEeccccchHHHHHHHHHHHHHHHHHHHHHHhcccCCCcccc
Confidence 78889999999999999999975 2 679999999999999999999999999988887 442 1
Q ss_pred h----HH---------HHHHHhcCC--------CC-cc----hHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHcCCcc
Q 010829 356 A----AL---------KKAAVALNP--------GG-SF----YLPTNILLIAFFNYYYTFLQ-LDPDDVSEQLKRQGASI 408 (499)
Q Consensus 356 ~----~~---------~~~~~~l~p--------~~-~~----y~~~y~~Lii~Fs~f~s~i~-~np~diAe~Lkk~G~~I 408 (499)
+ |. ..+.++++| .+ |+ |.++|+++|++|+|||+++. +||||+||||||||++|
T Consensus 328 ~~lg~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~p~~~~iY~~~~~~lii~Fs~fy~~i~g~np~dvA~nLkk~G~~I 407 (490)
T 2ww9_A 328 KIMGHYENANNLLAVPTFPLSLLAPPTSFFKGVTQQPLTFITYSAFILVTGIWFADKWQAISGSSARDVALEFKDQGITL 407 (490)
T ss_dssp TTSBCCSCCSSSSCSCSSBSCCSSCCCCSSCCCCSCSHHHHHHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHTS
T ss_pred ccccchhccccccchhHHHHHHhCCccchhhhcccCchhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHcCCcc
Confidence 1 22 223455666 44 66 88999999999999999995 99999999999999999
Q ss_pred ccccCChhHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHhcCcccccccccchhHHHHHHHHHHHHHHHHHHHHccC
Q 010829 409 PLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKY 486 (499)
Q Consensus 409 pGiRpG~~T~~yL~kvi~r~t~~Gai~L~~ia~lP~ll~~~~~~~~~~~~gGTslLI~Vgv~~~~~~qi~~~~~~~~Y 486 (499)
||+||| +|+|||+|+++|+|++||+|++++|++|++++ .. .||||+||+|||++|++||+++|...+.+
T Consensus 408 pGiRpG-~T~~yL~~vi~rit~~Ga~~L~~lavlp~~l~------~~--ggGTslLI~VgV~~~~~~qi~~e~~~~g~ 476 (490)
T 2ww9_A 408 MGRREQ-NVAKELNKVIPIAAVTGASVLSLITVIGESLG------LK--GKAAGIVVGIAGGFSLLEVITIEYQQSGG 476 (490)
T ss_dssp SSCCCC-CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHS------CC--SSHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred CCCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hc--CcHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999 99999999999999999999999999999964 22 38999999999999999999999887754
No 8
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=100.00 E-value=7.3e-86 Score=703.26 Aligned_cols=369 Identities=19% Similarity=0.181 Sum_probs=314.5
Q ss_pred cCCchhHHHHHHHHHHHHHhccccccCCcchhhhccccccchhHHHHHhhcCCCCcccceeecCchHHHHHHHHHHHH--
Q 010829 83 KGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLL-- 160 (499)
Q Consensus 83 k~~l~~Kil~Tl~~l~iyrlG~~IPlPGId~~~~~~~~~~~~~l~~l~~fsGg~~~~~SLfsLGI~PyItAsII~QLL-- 160 (499)
|+++|+|++||++++++||+|+|||+||+|.++. .++++++.++| +++|+|+|+|||+||||||||||||
T Consensus 25 ~~~lr~kil~Tl~~L~iyrigs~IPlpGi~~~~~-----~~~~~~~~~~f---a~~~~SifaLGI~PyItASII~QLL~g 96 (476)
T 2wwb_A 25 KIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDS-----ADPFYWMRVIL---ASNRGTLMELGISPIVTSGLIMQLLAG 96 (476)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHSCCCSSSTTTC-----SCCCHHHHHHH---CSSCSSSCSSSSTHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHccCCCCCcChhhc-----cccHHHHHHHH---ccccccHHHHhhHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999998752 24688888877 5589999999999999999999999
Q ss_pred hhhchhhHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccccccchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 010829 161 AQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVL-YLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERIS 239 (499)
Q Consensus 161 ~~~~p~L~~l~k~ege~gr~k~~~~tr~ltl~ia~iQa~~~~~-~~~~~~~~~~~~~~~~~vl~LvaGt~~l~WL~E~It 239 (499)
+.++|.+++++ ||+|+|++|||+|+++|++||++++. .+.....+.+..+++++++||++|++++|||||+||
T Consensus 97 ~~iip~~~~l~------gR~k~~~~tR~lti~la~iQa~~~v~~g~~~~~~~~~~~~~~~ivl~L~~Gt~~lmwL~E~It 170 (476)
T 2wwb_A 97 AKIIEVGDTPK------DRALFNGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQ 170 (476)
T ss_dssp HCCCSCCSSSS------CSSCHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSCSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccchhhc------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44788776652 89999999999999999999999887 431111234555667889999999999999999999
Q ss_pred c-ccCCCchhHHHHHHHhhhh------hH------------HHHHHHHHHhhc-------------CchHHHHHHHHHHH
Q 010829 240 D-LKLGNGTSLLIFTSIISYL------PA------------SFGRTVAEAFQD-------------GNYIGLATIIISFI 287 (499)
Q Consensus 240 ~-~GiGnG~SLiI~~~Ii~~l------p~------------~i~~~~~~~~~~-------------~~~~~~li~~~~~l 287 (499)
| ||+|||+|++|++|||+++ |. .+.+.++...+. .+.++ +..+++++
T Consensus 171 ~g~GiGnGiSLiI~agI~~~l~~~~f~p~~~~~~~~~e~~G~i~~~~~~~~~~~~~~~~l~~~~~r~~l~~-~~~ll~~~ 249 (476)
T 2wwb_A 171 KGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLPN-LMNLIATI 249 (476)
T ss_dssp TTTCSSCSHHHHHHHHHHHHHHHHHTCCSSCSCCCSCCTTTTCCCHHHHHHHTCTTSSSSSSCSSSSSHHH-HHHHHHHH
T ss_pred ccCCcccccHHHHHHHHHHHHHHHhcCcccccccccchhHHHHHHHHHHHhcccccccchhhhhhccccch-HHHHHHHH
Confidence 9 9999999999999999999 76 444444433111 23344 33444567
Q ss_pred HHHHHHHhhccceEeeeeeecccccccCCCCCcccccceeeccCcchhHHHHHHhhhhHHHHHHhh----c-h-------
Q 010829 288 LLVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFT----G-I------- 355 (499)
Q Consensus 288 iv~~~iV~l~~a~rrIPI~~~~r~~~~~~~~~~~~ylPiKln~aGvmPiIfassll~lp~~i~~~~----~-~------- 355 (499)
++++++||+|++||||||||+| .+ ++++|+|+|+||+||||+|||+|++++|+++++++ + +
T Consensus 250 ~v~~~vV~~q~~~rrIPv~yak-~~------g~~~~~PiKln~aGviPiIfassll~~p~~i~~~~~~~~~~~~~~~~lg 322 (476)
T 2wwb_A 250 FVFAVVIYFQGFRVDLPIKSAR-YR------GQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSARFSGNLLVSLLG 322 (476)
T ss_dssp HHHHHHHHHHHCCBCCCCCBCS-SS------SBCSCCCBCTTTSSHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHC
T ss_pred HHHhheeEEEEEEEEEEEEecc-cC------CccceeeeeeccccchHHHHHHHHHHHHHHHHHHHhhcCCCcchhhhhh
Confidence 7888999999999999999997 53 57899999999999999999999999999999876 2 1
Q ss_pred hHHHH-------------HHHhcCC--------CCcchHHHHHHHHHHHHHHHH----Hhc-cChHHHHHHHHHcCCccc
Q 010829 356 AALKK-------------AAVALNP--------GGSFYLPTNILLIAFFNYYYT----FLQ-LDPDDVSEQLKRQGASIP 409 (499)
Q Consensus 356 ~~~~~-------------~~~~l~p--------~~~~y~~~y~~Lii~Fs~f~s----~i~-~np~diAe~Lkk~G~~Ip 409 (499)
.|.+. +.++++| .+|+|.++|++++++|||||+ ++. +||||+||||||||++||
T Consensus 323 ~~~~~~~~~~~~~~~~~g~~~~l~~p~~~~~~~~~p~~~~iY~~lii~f~~fyt~~Wv~i~g~np~dvA~~Lkk~G~~Ip 402 (476)
T 2wwb_A 323 TWSDTSSGGPARAYPVGGLCHYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMR 402 (476)
T ss_dssp SSSTTCSCTTSSSCCSSSHHHHTSCCSSSSSCCCSSHHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHCTTTC
T ss_pred hhhhccccccccccccHHHHHHcCCcchhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCccC
Confidence 13222 5677877 568999999999999999999 774 999999999999999999
Q ss_pred cccCChhHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHhcCcccccccccchhHHHHHHHHHHHHHHHHHHH
Q 010829 410 LVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEII 482 (499)
Q Consensus 410 GiRpG~~T~~yL~kvi~r~t~~Gai~L~~ia~lP~ll~~~~~~~~~~~~gGTslLI~Vgv~~~~~~qi~~~~~ 482 (499)
|+|| ++|+|||+|+++|+|++||+|++++|++|++++ .+ +||||+||+||++++++||+++|..
T Consensus 403 GiRp-~~T~~yL~~vi~rit~~Ga~~l~~lavlp~~l~------~~--~gGTslLI~Vgv~~~~~e~i~~e~~ 466 (476)
T 2wwb_A 403 GHRE-TSMVHELNRYIPTAAAFGGLCIGALSVLADFLG------AI--GSGTGILLAVTIIYQYFEIFVKEQS 466 (476)
T ss_dssp CCCT-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CS--SCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------Hh--cchHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999 899999999999999999999999999999965 22 6899999999999999999999986
No 9
>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A
Probab=51.19 E-value=9.4 Score=32.03 Aligned_cols=23 Identities=35% Similarity=0.432 Sum_probs=17.8
Q ss_pred cCCccccccCChhHHHHHHHHHH
Q 010829 404 QGASIPLVRPGKSTAAFLKTVLS 426 (499)
Q Consensus 404 ~G~~IpGiRpG~~T~~yL~kvi~ 426 (499)
....|||+||||.=.+.+++...
T Consensus 37 k~~~ipGFRkGKvP~~vi~k~yG 59 (109)
T 2nsc_A 37 QRVEIPGFRKGRIPKNVLKMKLG 59 (109)
T ss_dssp TTCCCTTSCTTCCCHHHHHHHHG
T ss_pred ccCCCCCcCCCCCCHHHHHHHHh
Confidence 35799999999966777766654
No 10
>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} SCOP: d.241.2.1 PDB: 1oms_A*
Probab=43.50 E-value=15 Score=31.47 Aligned_cols=23 Identities=17% Similarity=0.172 Sum_probs=18.2
Q ss_pred CCccccccCChhHHHHHHHHHHH
Q 010829 405 GASIPLVRPGKSTAAFLKTVLSR 427 (499)
Q Consensus 405 G~~IpGiRpG~~T~~yL~kvi~r 427 (499)
...|||+||||.=.+.+++....
T Consensus 41 ~v~ipGFRkGKvP~~vi~k~yG~ 63 (121)
T 1p9y_A 41 KVRIDGLRKGKVPMNIVAQRYGA 63 (121)
T ss_dssp TCCCTTSCTTCSCHHHHHHHHHH
T ss_pred hCccCCcCCCCCCHHHHHHHHHH
Confidence 57999999999777777776653
No 11
>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7
Probab=35.00 E-value=12 Score=31.47 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=16.5
Q ss_pred CCccccccCChhHHHHHHHHHH
Q 010829 405 GASIPLVRPGKSTAAFLKTVLS 426 (499)
Q Consensus 405 G~~IpGiRpG~~T~~yL~kvi~ 426 (499)
...|||+||||.=.+.+++..-
T Consensus 37 ~~~ipGFRkGKvP~~vi~k~yG 58 (112)
T 2d3o_1 37 DVRVPGFRPGKAPRKVIENRVG 58 (112)
T ss_dssp TSCBTTBCTTCCCSTTHHHHTT
T ss_pred hCCCCCcCCCCCCHHHHHHHhC
Confidence 4799999999865666666554
Done!