RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 010829
(499 letters)
>gnl|CDD|236412 PRK09204, secY, preprotein translocase subunit SecY; Reviewed.
Length = 426
Score = 404 bits (1041), Expect = e-138
Identities = 160/422 (37%), Positives = 261/422 (61%), Gaps = 15/422 (3%)
Query: 78 FGDFFKGP-LPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNS--LLSTLDSFSG 134
+ FK L + L LG L + R+G YIP+ G++ A DQ S +L + FSG
Sbjct: 5 LKNAFKIKELRKRILFTLGALIVFRIGSYIPVPGIDPAALAQLFDQQSGGILGLFNLFSG 64
Query: 135 GGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFA 194
G + R I +LGI+P+I A I+ QLL + PKL++L+K EGEAGR+K+ QYTRY +V A
Sbjct: 65 GALSRFSIFALGIMPYITASIIMQLLTVVIPKLEELKK-EGEAGRRKINQYTRYLTVVLA 123
Query: 195 IVQAIGQVLYLRPY-------VNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGNGT 247
VQ+IG L + LT V LT G+ F ++GE+I++ +GNG
Sbjct: 124 FVQSIGIAAGLNSMSGGGGLVPIPPGFFFYLTIVITLTAGTMFLMWLGEQITERGIGNGI 183
Query: 248 SLLIFTSIISYLPASFGRTVAEAFQDG-NYIGLATIIISFILLVLGIVYVQEAERKIPIN 306
SL+IF I++ LP++ G+T A + + +I+ F+ ++ +V+V++A+R+IP+
Sbjct: 184 SLIIFAGIVAGLPSAIGQTFELARTGSLSILVFLLLIVLFLAVIAFVVFVEQAQRRIPVQ 243
Query: 307 YASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAA-LKKAAVAL 365
YA R R +S+YLP KVN +GV+P+IF++S L P T+A+F G + L+ A L
Sbjct: 244 YAKRQVGRKMYGGQSSYLPLKVNMAGVIPVIFASSILLFPATIAQFFGSGSWLQWIANYL 303
Query: 366 NPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVL 425
+PG Y+ LLI FF ++YT +Q +P++++E LK+ G IP +RPG+ TA +L VL
Sbjct: 304 SPGSPLYILLYALLIIFFTFFYTAIQFNPEEIAENLKKSGGFIPGIRPGEQTAEYLDKVL 363
Query: 426 SRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQK 485
+R++++G+++LA +A P +++ + F GTS+LI+VG A DT ++++++++S++
Sbjct: 364 TRLTLVGAIYLAFIALLPEILQNALGV--PFYFGGTSLLIVVGVALDTMKQIESQLMSRQ 421
Query: 486 YK 487
Y+
Sbjct: 422 YE 423
>gnl|CDD|214379 CHL00161, secY, preprotein translocase subunit SecY; Validated.
Length = 417
Score = 349 bits (898), Expect = e-116
Identities = 166/409 (40%), Positives = 258/409 (63%), Gaps = 4/409 (0%)
Query: 86 LPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSL 145
L + L LG L L RLG +IP+ G++ +L N LL+ L++FSGGG +G+ +L
Sbjct: 10 LLNRLLFTLGLLLLIRLGTFIPVPGIDHTQLYPSLSNNPLLNLLNTFSGGGFFVIGLFAL 69
Query: 146 GIVPFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYL 205
GI+P+INA I+ QLL I P L+ LQK EGEAGR+K+ QYTRY ++G+AI+Q+IG +L
Sbjct: 70 GILPYINASIIIQLLTSIIPSLEKLQKEEGEAGRRKINQYTRYLTLGWAIIQSIGISFWL 129
Query: 206 RPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGR 265
+PY+ +++ L V LT GS ++ E I++ LGNG+SLLIF +I+S LP
Sbjct: 130 KPYLFNWNLLLALEIVLALTSGSMIVLWLSELITEKGLGNGSSLLIFFNIVSNLPKLLQS 189
Query: 266 TVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLP 325
+ + + + ++ F + ++GI+++QEA RKIP+ +++ +S L ++YLP
Sbjct: 190 LLFSLSANITILSILLLLFLFFITLIGIIFLQEAIRKIPL-ISAKQLGKSSRLASNSYLP 248
Query: 326 FKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAA---VALNPGGSFYLPTNILLIAF 382
++N +GVMPIIF+++ L LPG L L + L YL +LI F
Sbjct: 249 LRLNQAGVMPIIFASALLVLPGYLTNILLNQFLLPLLSLFLQLASFKILYLVLYFVLILF 308
Query: 383 FNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAG 442
F+Y+Y+ + L+P D+SE L++ SIP +RPGK+T +LK L+R+++LG++FLA +A
Sbjct: 309 FSYFYSTIVLNPKDISENLQKMAVSIPGIRPGKATTKYLKKTLNRLTLLGALFLAFIALL 368
Query: 443 PAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIEF 491
P +IE +L+ F+G TS+LILVG A DT+R++Q +IS Y+N+
Sbjct: 369 PNLIESVLNLSVFKGLGTTSLLILVGVAIDTSRQIQTYLISNNYENMYD 417
>gnl|CDD|223279 COG0201, SecY, Preprotein translocase subunit SecY [Intracellular
trafficking and secretion].
Length = 436
Score = 314 bits (808), Expect = e-103
Identities = 154/429 (35%), Positives = 252/429 (58%), Gaps = 25/429 (5%)
Query: 78 FGDFFKGP-LPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGG 136
FK P L + L LG L + R+G +IP+ G+N A + L + FSGG
Sbjct: 10 LSPKFKVPELRKRILFTLGALIVYRIGSFIPVPGINPAALSDLFNSQRFLILFNMFSGGA 69
Query: 137 IGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIV 196
+ R I +LGI+P+I A I+ QLL +P L+ L K EGE GR+K+ QYTRY ++ A++
Sbjct: 70 LSRGSIFALGIMPYITASIIMQLLTVGSPILKKLDK-EGEEGRRKIQQYTRYLTLVLAVI 128
Query: 197 QAIGQVLYLR-----PYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGNGTSLLI 251
QA+G VL V + + L + LT G+ F ++GE+I+ +GNG SL+I
Sbjct: 129 QALGVVLGGNNGGSPSDVGNGGIFFYLLIILQLTAGTMFLMWLGEQITKRGIGNGISLII 188
Query: 252 FTSIISYLPASFGRTVAEAFQDG----NYIGLATIIISFILLVLGIVYVQEAERKIPINY 307
F I++ LP++ + A G + + L +++ + ++ +VYV++A R+IPI Y
Sbjct: 189 FAGIVASLPSAIFGII-GALPTGALFLSILFLLLLVLLTLAIIFLVVYVEQARRRIPIQY 247
Query: 308 ASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTG-------IAALKK 360
A R + R +S+YLP K+N +GV+P+IF++S L P T+A+F G ++ L
Sbjct: 248 AKRQSYRG----QSSYLPLKLNYAGVIPVIFASSLLLFPSTIAQFLGNGGLAYYLSPLTS 303
Query: 361 AAVALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAF 420
+ AL+PG Y+ ++LI FF+Y+YT +Q +P++++E LK+ G IP +RPGK T +
Sbjct: 304 ISDALSPGSPVYIALYVVLIIFFSYFYTEIQFNPEEIAENLKKSGGFIPGIRPGKDTEKY 363
Query: 421 LKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAE 480
L V+ R++ +G++FL ++A P ++ + F GTS+LI+VG A DT +++AE
Sbjct: 364 LNRVIPRLTFIGALFLGLIAILPELLGTAGGVP--FYFGGTSLLIVVGVALDTYEQIEAE 421
Query: 481 IISQKYKNI 489
++ +KY +
Sbjct: 422 LLMEKYPGL 430
>gnl|CDD|233214 TIGR00967, 3a0501s007, preprotein translocase, SecY subunit.
Members of this protein family are the SecY component of
the SecYEG translocon, or protein translocation pore,
which is driven by the ATPase SecA. This model does not
discriminate bacterial from archaeal forms [Protein
fate, Protein and peptide secretion and trafficking].
Length = 410
Score = 313 bits (804), Expect = e-103
Identities = 155/410 (37%), Positives = 246/410 (60%), Gaps = 14/410 (3%)
Query: 89 KFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIV 148
K L LG L L R+G +IP+ G++ AF + QN + L++FSGG +G++ I +LGI
Sbjct: 3 KLLFTLGLLVLFRIGTFIPIPGIDASAFQNLIQQNPIFGLLNTFSGGALGQISIFALGIS 62
Query: 149 PFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLY-LRP 207
P+I A I+ QLL P L LQK+EGE GR+K+ Q TRY ++ A +Q++G V+ +
Sbjct: 63 PYITASIIIQLLTGDVPPLLQLQKKEGEIGRRKINQLTRYLTLILAFIQSLGIVMTGMYG 122
Query: 208 YVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGR-- 265
YV D + L V LT GS ++GE+I+ +GNG SLLIF I + +P+ +
Sbjct: 123 YVGDPGAFFYLLIVIQLTTGSMIVMWLGEQITKYGIGNGISLLIFAGIAATIPSGLLQPT 182
Query: 266 TVAEAFQDGNYIGLATI-----IISFILLVLGIVYVQEAERKIPINYASRYTSRSGGLQR 320
V ++ L + +I+ I++ +V+VQ+A RKIPI A R R G +
Sbjct: 183 EVRQSKVRDLISFLQNLPFLLYLIATIIVFAVVVFVQQARRKIPIQSAKRQGGRRGS--Q 240
Query: 321 SAYLPFKVNSSGVMPIIFSTSSLALPGTLARF----TGIAALKKAAVALNPGGSFYLPTN 376
S YLP K+N +GV+P+IF+++ L+ P T+++F G A ++L+
Sbjct: 241 STYLPLKLNYAGVIPVIFASALLSNPATISQFLNSNQGGAWFLNPILSLSLSDPIGAILY 300
Query: 377 ILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFL 436
++LI FF+++Y LQL+P+D+++ LK+QG IP +RPGK T +LK V+ R++ +GS+FL
Sbjct: 301 LILIIFFSFFYVELQLNPEDMAKNLKKQGMFIPGIRPGKMTEKYLKRVIPRLTFVGSLFL 360
Query: 437 AILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKY 486
++A P + L +G GTS+LI+VG A DT +++++E+IS+ Y
Sbjct: 361 GLIALLPNFLGAIGGLPTSKGLGGTSLLIVVGVAIDTYKQLESELISRNY 410
>gnl|CDD|215869 pfam00344, SecY, SecY translocase.
Length = 340
Score = 292 bits (751), Expect = 1e-95
Identities = 140/349 (40%), Positives = 206/349 (59%), Gaps = 23/349 (6%)
Query: 141 GICSLGIVPFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIG 200
I +LGI P+I A I+ QLL + PKL+ L K EGE GRKK+ QYTRY ++ A++QAIG
Sbjct: 1 SIFALGIGPYITASIIMQLLTVVGPKLEKLDK-EGEEGRKKIQQYTRYLTLVLALIQAIG 59
Query: 201 QVLYLRPY-------VNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGNGTSLLIFT 253
VL L Y V +L V LT G+ F ++GE I+ +GNG SL+IF
Sbjct: 60 IVLGLGSYGAFSNGIVLGVGFLNLLLIVLQLTAGTMFLMWLGELITKYGIGNGISLIIFA 119
Query: 254 SIISYLPASFGRTVAEAFQDG---NYIGLATIIISFILLVLGIVYVQEAERKIPINYASR 310
I++ +P + + G + + L ++++ + ++L +VY+QEA R+IPI YA R
Sbjct: 120 GIVASIPWAIINLFSLLSSAGGLLSILYLLLLLLATLAVILLVVYLQEARRRIPIQYAKR 179
Query: 311 YTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTG----IAALKKAAVALN 366
G +S+YLP K+N +GV+PIIF++S LA P T+A+F G + + A L
Sbjct: 180 VVGGGRG--QSSYLPIKLNYAGVIPIIFASSLLANPQTIAQFLGSSFPLWPVSGLAYYLP 237
Query: 367 PGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLS 426
G Y+ I+LI FF+Y+YT + +P D++E LK+ G IP +RPGKST +L V+
Sbjct: 238 IGSPVYILFYIVLIIFFSYFYTAIGFNPKDIAENLKKSGGFIPGIRPGKSTEKYLNRVIP 297
Query: 427 RISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTAR 475
R++ +G++FL ++A P + L A GF GTS+LI VG A DT
Sbjct: 298 RLTFIGAIFLGLIAVLPDL------LGALGGFGGTSLLIAVGVALDTYE 340
>gnl|CDD|183828 PRK12907, secY, preprotein translocase subunit SecY; Reviewed.
Length = 434
Score = 226 bits (576), Expect = 1e-68
Identities = 139/414 (33%), Positives = 233/414 (56%), Gaps = 18/414 (4%)
Query: 89 KFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIV 148
K L L L + R+G +IP+ N E DQ ++L L+ F GG + I ++GI
Sbjct: 17 KILFTLAMLIVFRIGTFIPVPHTNAEVLKVQ-DQANVLGMLNVFGGGALQHFSIFAVGIT 75
Query: 149 PFINAQIVFQLLA-QINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLR- 206
P+I A I+ QLL + PK + K +GE GRKK Q+TRY ++ A +QAIG
Sbjct: 76 PYITASIIVQLLQMDVIPKFSEWAK-QGEMGRKKSAQFTRYFTIILAFIQAIGMSYGFNN 134
Query: 207 ----PYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPAS 262
+ D S L T+LT G+AF ++GE+I+ +GNG S+LIF +++ +P
Sbjct: 135 IAGGQLITDQSWTTYLFIATVLTAGTAFLLWLGEQITANGVGNGISMLIFAGLVAAIPNV 194
Query: 263 FGRTVAEAFQDG------NYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRSG 316
+ + FQ+ + I + I + + +V+G++Y+Q+A RKIPI YA + S +
Sbjct: 195 ANQIYLQQFQNAGDQLFMHIIKMLLIGLVILAIVVGVIYIQQAVRKIPIQYA-KAVSGNN 253
Query: 317 GLQ--RSAYLPFKVNSSGVMPIIFSTSSLALPGTLAR-FTGIAALKKAAVALNPGGSFYL 373
Q ++ +LP KVNS+GV+P+IF+++ L P T+A+ F + K L+ +
Sbjct: 254 QYQGAKNTHLPLKVNSAGVIPVIFASAFLMTPRTIAQLFPDSSVSKWLVANLDFAHPIGM 313
Query: 374 PTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGS 433
+ LI F Y+Y F+Q++P+ ++E LK+Q +P +RPGKST ++ +L R++ +G+
Sbjct: 314 TLYVGLIVAFTYFYAFIQVNPEQMAENLKKQNGYVPGIRPGKSTEQYVTKILYRLTFIGA 373
Query: 434 VFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYK 487
+FL ++ P V + L GTS+LI+VG A +T + ++++++ + YK
Sbjct: 374 IFLGAISILPLVFTKIATLPPSAQIGGTSLLIIVGVALETMKTLESQLVKRHYK 427
>gnl|CDD|131966 TIGR02920, acc_sec_Y2, accessory Sec system translocase SecY2.
Members of this family are restricted to the Firmicutes
lineage (low-GC Gram-positive bacteria) and appear to be
paralogous to, and much more divergent than, the
preprotein translocase SecY. Members include the SecY2
protein of the accessory Sec system in Streptococcus
gordonii, involved in export of the highly glycosylated
platelet-binding protein GspB [Protein fate, Protein and
peptide secretion and trafficking].
Length = 395
Score = 118 bits (298), Expect = 3e-29
Identities = 87/348 (25%), Positives = 153/348 (43%), Gaps = 23/348 (6%)
Query: 102 LGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLA 161
LG YIP+ V +NS + +GG + L I SLG+ P++ + I+ QL +
Sbjct: 18 LGSYIPIPFVEVSKQDMEGVKNSFFKIAIANTGGNLTTLSIFSLGLGPWMTSMIILQLFS 77
Query: 162 QINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTDWVLTSV 221
D Q + + R++ L G AI+ + N S +L +
Sbjct: 78 FTKSDGFDAQSPKEQQYRERFLTLIIAIIQGLAIIHSF-------TNKNGLSDFNMLLAT 130
Query: 222 TLLTLGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQDGNYIGLAT 281
+L G+ ++ + + +G G+ ++ S++ +P V E FQ YI L
Sbjct: 131 LILVTGTCLLVWLADLNAKYGIG-GSMPIVLVSMLKNIP----SNVFELFQMS-YIWLIA 184
Query: 282 IIISFILLVLGIV-YVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFST 340
++I L+ L ++ +++ AE +IP+N S + +YLP K+N +G M ++
Sbjct: 185 LLILLTLVALFLLAFIERAEYRIPVNDISLHNR----SNLMSYLPIKLNPAGGMMYMYVM 240
Query: 341 SSLALPGTLARFTGIAALKKAAVA-LNPGGSFYLPTNI----LLIAFFNYYYTFLQLDPD 395
S L LP + G + + SF P I +L +Y++TF+ ++P
Sbjct: 241 SLLMLPQYIIILLGRIFPNSSLINNWVFQFSFSSPVGILIYLILQMLLSYFFTFVNINPK 300
Query: 396 DVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGP 443
++S+ ++ G IP + PGK T +L + R G VF A P
Sbjct: 301 EISKSFRKSGNYIPGIAPGKDTQRYLNRLARRFCWFGGVFNAFQLGIP 348
>gnl|CDD|237095 PRK12417, secY, preprotein translocase subunit SecY; Reviewed.
Length = 404
Score = 110 bits (277), Expect = 2e-26
Identities = 93/425 (21%), Positives = 182/425 (42%), Gaps = 44/425 (10%)
Query: 80 DFFKGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGR 139
F + K L L + LG I + V+ +G S L + +GG +
Sbjct: 6 KFEYKIIYKKILFTCFILFIYILGSNISIPFVSYNDMLGG--HESFLKIAAANTGGDLRT 63
Query: 140 LGICSLGIVPFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAI 199
L I SLG+ P++ + I+ QL + Q E + R+++L ++ A++Q++
Sbjct: 64 LNIFSLGLGPWMTSMIILQLFSYRKRDGLMKQTIEEQHYRERIL------TLIIAVIQSL 117
Query: 200 GQVLYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGNGTSLLIFTSIISYL 259
+L L P S +L + +L G+ F ++ + + +G G ++ S+I +
Sbjct: 118 AVILSL-PSKERISQTNILLNTLILVTGTMFLVWLSDLNARYGIG-GPMPIVLVSMIKSI 175
Query: 260 PASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYV----QEAERKIPINYASRYTSRS 315
P + V E +II ILLV+ ++ + E +IP N +
Sbjct: 176 P----QDVIEYID-----ASHIVIILLILLVIITLFFLYFIELVEYRIPYNDIMNHNRF- 225
Query: 316 GGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPGGSFYLPT 375
+ +YL K+N +G MPI++S S L P + I ++ ++
Sbjct: 226 ---KMYSYLSIKLNPAGGMPIMYSMSLLVFPQYIIIL--ILSIFPNNSGISADMDMLSFG 280
Query: 376 N-------ILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRI 428
+ ++L +Y+++F+ ++ +++ + + G IP V PGK T +L + R
Sbjct: 281 SPLGVTVYLILQFLLSYFFSFVNINTKQIAKDMLKSGNYIPGVYPGKDTERYLNYIARRF 340
Query: 429 SVLGSVFLAILAAGPA----VIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQ 484
S G++F+ ++A P + F G ++ VG + + A +++A +
Sbjct: 341 SWFGALFVTVIAGIPLYFTLFDPHLSTEIYFSG----QFMMFVGMSFNIADEIRALLYFD 396
Query: 485 KYKNI 489
KYK +
Sbjct: 397 KYKPL 401
>gnl|CDD|236293 PRK08568, PRK08568, preprotein translocase subunit SecY; Reviewed.
Length = 462
Score = 54.8 bits (133), Expect = 5e-08
Identities = 89/409 (21%), Positives = 146/409 (35%), Gaps = 89/409 (21%)
Query: 93 LLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFIN 152
L+ Y L+ IPL G+++ + D LL G G + LGI P +
Sbjct: 37 LILYFILT----NIPLYGISQSS----QDLFELLRI---IFAGSFG--TLLQLGIGPIVT 83
Query: 153 AQIVFQLLAQINPKLQDLQKREGEA---GRKKVLQYTRYASVGFAIVQAIGQVL---YLR 206
A I+ QLL DL E A G +K+L ++ ++A VL +
Sbjct: 84 AGIILQLLVGSKLINLDLSDPEDRALFQGLQKLL------AIVMIALEAAPFVLAGAFGP 137
Query: 207 PYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGNGTSLLI--------FTSIISY 258
+ L L LG + E +S +G+G SL I F + ++
Sbjct: 138 ATGLASTPLLALLIFLQLFLGGILIILLDELVSKWGIGSGISLFILAGVSQTIFVGLFNW 197
Query: 259 LPASFGRTV------AEAFQDGNYIGLATI---------IISFILLVLGIVYVQEAERKI 303
L G V A GN + +I+ I++ L +VY++ +I
Sbjct: 198 LTGGQGLPVGFIPALFSAITSGNLTLALLLTTRGLLLLGLITTIVIFLIVVYLESMRVEI 257
Query: 304 PINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFST---SSLALPGTLARFTGIAALKK 360
P+++ +R P K V+P+I +++ L G L + GI L
Sbjct: 258 PLSHGRVRGARG-------RYPLKFIYVSVLPVILVRALQANIQLFGQLLQRLGIPILGT 310
Query: 361 --AAVALNPGGSFYLPTNILLIAFFNY-------YYTFL---------------QLDPDD 396
++ A G Y + + Y F+ LDP
Sbjct: 311 YDSSGASPISGLAYYLSPPHSPYDWIQDPLRAIIYALFMIVLSILFAIFWVETTGLDPKT 370
Query: 397 VSEQLKRQGASIPLVRPGKSTAAFLKTVLSR----ISVLGSVFLAILAA 441
+ QL+ G IP R ++ VL R ++V+G + +LA
Sbjct: 371 QARQLQNSGMQIPGFR---RNPKVIEKVLERYIPPVTVIGGAIVGLLAV 416
>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated.
Length = 631
Score = 32.8 bits (75), Expect = 0.49
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 361 AAVALNPG--GSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQL 401
A AL G +F +P N L F+ + L+ DP+D SEQL
Sbjct: 508 ATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKFDPEDTSEQL 550
>gnl|CDD|212118 cd10807, YdjC_like_3, uncharacterized YdjC-like family proteins
from bacteria. This subfamily contains many
hypothetical proteins, and belongs to the YdjC-like
family of uncharacterized proteins from bacteria. The
YdjC-family is represented by an uncharacterised protein
YdjC (also known as ChbG) encoded by the chb
(N,N'-diacetylchitobiose, also called [GlcNAc]2) or cel
operon in Escherichia coli, which encodes enzymes
involved in growth on an N,N'-diacetylchitobiose carbon
source. The molecular function of this subfamily is
unclear.
Length = 251
Score = 31.0 bits (71), Expect = 1.2
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 402 KRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAG 460
+R P +R STA L L +L ++ LA L AG + RGFAG
Sbjct: 138 RRYPGGRPWLR---STAEPLPAGLPLAGLLKALVLAALGAGALRRLARAGIPTNRGFAG 193
>gnl|CDD|238841 cd01684, Tet_like_IV, EF-G_domain IV_RPP domain is a part of
bacterial ribosomal protected proteins (RPP) family.
RPPs such as tetracycline resistance proteins Tet(M) and
Tet(O) mediate tetracycline resistance in both
gram-positive and -negative species. Tetracyclines
inhibit the accommodation of aminoacyl-tRNA into
ribosomal A site and therefore prevent the addition of
new amino acids to the growing polypeptide. RPPs Tet(M)
confer tetracycline resistance by releasing tetracycline
from the ribosome and thereby freeing the ribosome from
inhibitory effects of the drug, such that aa-tRNA can
bind to the A site and protein synthesis can continue.
Length = 115
Score = 28.4 bits (64), Expect = 4.0
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 234 IGERISDLKLGNGTSLLIFTSIIS--YLPASFGRTVAEAFQDGNYIGL 279
+G R+ L G+G L + S +S LP SF V E ++ GL
Sbjct: 28 VGLRVEPLPRGSG---LQYESEVSLGSLPRSFQNAVEETVRETLQQGL 72
>gnl|CDD|183206 PRK11569, PRK11569, transcriptional repressor IclR; Provisional.
Length = 274
Score = 29.0 bits (65), Expect = 5.3
Identities = 38/148 (25%), Positives = 64/148 (43%), Gaps = 23/148 (15%)
Query: 57 KREKSSSARGVAAAMEDSSIDFGDFFKGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAF 116
KR + +A A + S+ G LKLL ++A S + L + ++A
Sbjct: 8 KRGRKPAAATAPATGQVQSLTRG-----------LKLLEWIAESNGSV--ALTELAQQAG 54
Query: 117 VGNLDQNSLLSTLDSFSGGG----IGRLGICSLGIVPFINAQIVFQ---LLAQINPKLQD 169
+ N + LL+T+ G +G LG ++G FI Q LLA ++P L++
Sbjct: 55 LPNSTTHRLLTTMQQQ---GFVRQVGELGHWAIGAHAFIVGSSFLQSRNLLAIVHPILRN 111
Query: 170 LQKREGEAGRKKVLQYTRYASVGFAIVQ 197
L + GE VL + + ++ VQ
Sbjct: 112 LMEDSGETVNLAVLDQSDHQAIIIDQVQ 139
>gnl|CDD|236123 PRK07883, PRK07883, hypothetical protein; Validated.
Length = 557
Score = 28.3 bits (64), Expect = 10.0
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 10/56 (17%)
Query: 410 LVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLI 465
LV PG+ F I+VL + A++A P IE+ L AF FA +VL+
Sbjct: 54 LVNPGRPIPPF-------ITVLTGITTAMVAGAP-PIEEV--LPAFLEFARGAVLV 99
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.138 0.394
Gapped
Lambda K H
0.267 0.0736 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,796,336
Number of extensions: 2598486
Number of successful extensions: 2920
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2861
Number of HSP's successfully gapped: 82
Length of query: 499
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 398
Effective length of database: 6,457,848
Effective search space: 2570223504
Effective search space used: 2570223504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.3 bits)