RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 010829
         (499 letters)



>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 422

 Score =  197 bits (503), Expect = 1e-58
 Identities = 67/431 (15%), Positives = 133/431 (30%), Gaps = 62/431 (14%)

Query: 83  KGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGI 142
           +     K       L L  +   I +     +         ++     + +        +
Sbjct: 19  EITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQI-------PAIFEFWQTITASR--IGTL 69

Query: 143 CSLGIVPFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQV 202
            +LGI P + A I+ QLL      +  +        R       +  S+    V+A+  V
Sbjct: 70  ITLGIGPIVTAGIIMQLLVG--SGIIQMDL-SIPENRALFQGCQKLLSIIMCFVEAVLFV 126

Query: 203 LYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPAS 262
                 +      +++  +  +  GS    Y+ E +S   +G+G  L I   +   +   
Sbjct: 127 GAGAFGILTPLLAFLV--IIQIAFGSIILIYLDEIVSKYGIGSGIGLFIAAGVSQTIFVG 184

Query: 263 -------FGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRS 315
                    + +    Q    I     II  I++ L +VY +    +IP+ +        
Sbjct: 185 ALGPEGYLWKFLNSLIQGVPNIEYIAPIIGTIIVFLMVVYAECMRVEIPLAHGRIK---- 240

Query: 316 GGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLAR------------FTGIAALKKAAV 363
                    P K      +P+I + +  A                   + G  A+   A 
Sbjct: 241 ---GAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRMGIPILGHYEGGRAVDGIAY 297

Query: 364 ALNPGGSFYLPTNILL-------------IAFFNYYYTFLQLDPDDVSEQLKRQGASIPL 410
            L+         +  +             + F  ++     LDP  +++++   G +I  
Sbjct: 298 YLSTPYGLSSVISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKG 357

Query: 411 VRPGKSTAA-FLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGC 469
            R  +      LK  +  ++V+ S F+  LA     I             GT VL+ V  
Sbjct: 358 FRKSEKAIEHRLKRYIPPLTVMSSAFVGFLATIANFIGAL--------GGGTGVLLTVSI 409

Query: 470 ATDTARKVQAE 480
                 ++  E
Sbjct: 410 VYRMYEQLLRE 420


>d1bg1a2 b.2.5.5 (A:322-575) STAT3b {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 254

 Score = 27.9 bits (62), Expect = 2.5
 Identities = 17/60 (28%), Positives = 21/60 (35%), Gaps = 10/60 (16%)

Query: 38  TWESFLSLLSPTFESTSGTKREKSSSAR--------GVAAAMEDSSIDFGDFFKGPLPGK 89
           TW+    +LS  F ST  TKR  S            G         I +  F K  + GK
Sbjct: 179 TWDQVAEVLSWQFSST--TKRGLSIEQLTTLAEKLLGPGVNYSGCQITWAKFCKENMAGK 236


>d2qamn1 d.188.1.1 (N:1-120) Prokaryotic ribosomal protein L17
           {Escherichia coli [TaxId: 562]}
          Length = 120

 Score = 26.7 bits (59), Expect = 2.8
 Identities = 12/49 (24%), Positives = 17/49 (34%)

Query: 289 LVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPII 337
           L        E   K+      R+ SR+GG  R     F+   +  M  I
Sbjct: 65  LAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYI 113


>d1edqa2 c.1.8.5 (A:133-443,A:517-563) Chitinase A, catalytic domain
           {Serratia marcescens [TaxId: 615]}
          Length = 358

 Score = 27.0 bits (59), Expect = 5.1
 Identities = 39/228 (17%), Positives = 63/228 (27%), Gaps = 38/228 (16%)

Query: 22  FDPLGINPDVCSHLNSTWESFLSLLSPTFESTSGTKREKSSSA-RGVAAAMEDSSIDFGD 80
           F    I     +HL      F+ +      + S  + E S  A +      ED  +   D
Sbjct: 42  FTVDKIPAQNLTHLLY---GFIPICGGNGINDSLKEIEGSFQALQRSCQGREDFKVSIHD 98

Query: 81  FF-------------KGPLPGKFLKLLGYLALSR-LGIYIPLGG-------------VNR 113
            F               P  G F +L+        L I   +GG             V R
Sbjct: 99  PFAALQKAQKGVTAWDDPYKGNFGQLMALKQAHPDLKILPSIGGWTLSDPFFFMGDKVKR 158

Query: 114 EAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFI----NAQIVFQLLAQINPKLQD 169
           + FVG++     L T   F G  I        G  P +    + +    L+ ++   L  
Sbjct: 159 DRFVGSVK--EFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQ 216

Query: 170 LQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVL-YLRPYVNDFSTDW 216
           L    G               +           + ++     DF   +
Sbjct: 217 LSVETGRKYELTSAISAGKDKIDKVAYNVAQNSMDHIFLMSYDFYGAF 264


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.138    0.394 

Gapped
Lambda     K      H
   0.267   0.0626    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,764,317
Number of extensions: 80809
Number of successful extensions: 198
Number of sequences better than 10.0: 1
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 4
Length of query: 499
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 410
Effective length of database: 1,185,626
Effective search space: 486106660
Effective search space used: 486106660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.2 bits)