BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010830
         (499 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|224070746|ref|XP_002303222.1| predicted protein [Populus trichocarpa]
 gi|222840654|gb|EEE78201.1| predicted protein [Populus trichocarpa]
          Length = 472

 Score =  613 bits (1582), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 293/467 (62%), Positives = 370/467 (79%), Gaps = 3/467 (0%)

Query: 31  NPHRPT-RPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQ 89
           N +R T +P+F +  D+  IS SAR++ EI+   SS DIESAL+ TGI PT D+VHEVL+
Sbjct: 7   NTNRKTSKPQFESSFDSQDISPSARLLFEIITRPSSHDIESALSSTGIPPTHDIVHEVLK 66

Query: 90  LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT 149
           L +++ +SA+ FFRWAGR  +L+ YAWNLMVD+LGKN  +E MW+AVR MK++ +LS+ T
Sbjct: 67  LCHENATSAIAFFRWAGRTHKLTSYAWNLMVDLLGKNWMYEPMWDAVRTMKQEDMLSMAT 126

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F S+F SYC AGK++EA+MSF VM  +GV+QDVV VNSLL+AIC +ENQT++ALEF +++
Sbjct: 127 FVSVFGSYCMAGKFNEAIMSFYVMDKYGVQQDVVVVNSLLTAICHEENQTAKALEFFDKI 186

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
           K  + P+ D+FAILLEGWEKEG+V +A  TFGEMV +  W+PE++ AY++FL TL+RG Q
Sbjct: 187 KLKIPPNADTFAILLEGWEKEGDVAKAKTTFGEMVIKVGWSPENMSAYDSFLTTLVRGSQ 246

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY 329
            DEA+KFLRVMKG+NC P LKFFSNALD+LVK NDSTHA+ LWDIMVG G  L+PNLIMY
Sbjct: 247 ADEAVKFLRVMKGKNCLPGLKFFSNALDMLVKQNDSTHAIPLWDIMVGSG--LLPNLIMY 304

Query: 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389
           NA+IGL CNN+DVDN FR  D+MVF+GAFPD LT+N+IF CLIKNK+VH V KFF+EMIK
Sbjct: 305 NAMIGLHCNNNDVDNAFRLLDEMVFNGAFPDFLTFNIIFRCLIKNKKVHRVGKFFYEMIK 364

Query: 390 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 449
           NE  PT  +C+ AI  L+D  +PE+AIEIWNYI+EN +LPL+ SAN LL+G  NLGR+S 
Sbjct: 365 NESPPTHFDCSAAIMTLIDGGDPEMAIEIWNYIVENHVLPLDGSANALLIGFCNLGRMSQ 424

Query: 450 VRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKT 496
           VRRFAE+ML+RRI IYE TM KLK +F    R  RD +D L RR K 
Sbjct: 425 VRRFAEDMLDRRINIYESTMKKLKDSFDKTGRHGRDKYDCLIRRWKA 471


>gi|356560843|ref|XP_003548696.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Glycine max]
          Length = 488

 Score =  607 bits (1566), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 290/480 (60%), Positives = 364/480 (75%), Gaps = 4/480 (0%)

Query: 18  PSSSSTTTSPTSHNPHRPTRP-RFPTHLDAPYISSSARIICEILAHASSDDIESALACTG 76
           P  S     P S NP +P +P +FP+HLDAP +SS+AR +C+IL  +S  DIESAL+ +G
Sbjct: 8   PGRSRDLKHP-SKNPTKPPQPNQFPSHLDAPNVSSTARALCDILTRSSPQDIESALSSSG 66

Query: 77  IIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAV 136
           I+P  +  +EVL+LSY+ PSSAV FFRWAGRG++   + WNLMVD+LGKN  FE MW+AV
Sbjct: 67  IVPEEECTNEVLRLSYNYPSSAVKFFRWAGRGKKHPVHTWNLMVDLLGKNQLFEPMWDAV 126

Query: 137 RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
           R MK++  LSL TFAS+F SYC A +++EAVMSFDVM  +GV+QDVVAVNSLLSAIC ++
Sbjct: 127 RSMKQEQKLSLSTFASVFQSYCTAARFNEAVMSFDVMDRYGVKQDVVAVNSLLSAICSED 186

Query: 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
           NQTS  LEF   +K  V PDGD+FAILLEGWEKEGN  +A  TFG+MV    WN ++V A
Sbjct: 187 NQTSFGLEFFEGIKAKVPPDGDTFAILLEGWEKEGNAAKAKTTFGDMVAHIGWNKDNVAA 246

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
           Y+ FL+TL+R   +D+ ++FL+VMK  +CFP LKFF+ ALD LVK ND+ HAV +WD+MV
Sbjct: 247 YDAFLMTLLRAGLMDDVVRFLQVMKDHDCFPGLKFFTTALDFLVKQNDADHAVPVWDVMV 306

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
                L+PNLIMYNA+IGLLCNN  VD+ FR  D+M FHGAFPDSLTYNMIFECL+KNK+
Sbjct: 307 --SGELVPNLIMYNAMIGLLCNNAAVDHAFRLLDEMAFHGAFPDSLTYNMIFECLVKNKK 364

Query: 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 436
             E E+FF EM+KNEW PT  NCA AI ML D D+PE A EIW+Y++EN + PL+ SAN 
Sbjct: 365 ARETERFFAEMVKNEWPPTGSNCAAAIAMLFDCDDPEAAHEIWSYVVENRVKPLDESANA 424

Query: 437 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKT 496
           LL+GL N+ R ++V+RFAE++L+RRI IY+ TM  LK AFY E RS RD +DSL RR K 
Sbjct: 425 LLIGLCNMSRFTEVKRFAEDILDRRINIYQSTMSILKDAFYKEGRSARDRYDSLYRRWKA 484


>gi|357517439|ref|XP_003629008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523030|gb|AET03484.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  602 bits (1552), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 289/475 (60%), Positives = 368/475 (77%), Gaps = 13/475 (2%)

Query: 31  NPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQL 90
           NP  P    FP+HLD P +SS+AR +C +L   S  DI++AL+ +GI P+ + VHEVL+L
Sbjct: 32  NPKIPKPNEFPSHLDTPNVSSTARTLCNLLTRTSPQDIDNALSSSGIHPSEECVHEVLKL 91

Query: 91  SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTF 150
           SY+ PSSA+ FFRWAGR ++ S +AWNLMVD+LG+N  FE MW+AVR MK++GVLSLPTF
Sbjct: 92  SYNYPSSAIKFFRWAGRLRKHSAHAWNLMVDLLGRNQLFEPMWDAVRTMKQEGVLSLPTF 151

Query: 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK 210
            S+F SYC AG+ +EAVMSFDVM  + ++++VVAVNSLLSAICR+ENQTS  +EFL   K
Sbjct: 152 VSVFQSYCMAGRVNEAVMSFDVMDKYDIDKNVVAVNSLLSAICREENQTSVGVEFLE--K 209

Query: 211 KI-------VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT 263
           K+       ++ DGDS+AILLEGWEKEGN  +A  TFGEMV R  W+ ++V AY+ FL+T
Sbjct: 210 KVTGKDEGKIELDGDSYAILLEGWEKEGNATKAKTTFGEMVIRVGWSQDNVAAYDAFLMT 269

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLM 323
           L+R  Q DE + FL+VMK  +CFP LKFF+NALD+LVK ND+ HA+ LWD+MV  G  L+
Sbjct: 270 LLRALQFDEVVGFLKVMKDHDCFPGLKFFTNALDVLVKRNDAAHAIPLWDVMVVSG--LL 327

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           PNLIMYNA+IGLLCNND++D+ FR  D+MV HGAFPDSLTYNMIFECL+KNK+V E E+F
Sbjct: 328 PNLIMYNAMIGLLCNNDEIDHAFRLLDEMVLHGAFPDSLTYNMIFECLVKNKKVRETERF 387

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
           F EMIKNEW PT  NCA AI ML + D+P+ A+EIW+Y++E  +  L+ SAN +L+GL  
Sbjct: 388 FAEMIKNEWLPTTSNCAVAIEMLFNCDDPDAALEIWSYMVETRVRVLDVSANMVLIGLCK 447

Query: 444 LGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLERRCKT 496
           L RLS+VRRFAEEML++RI IY+ TM+KLK+AFY ESR  S RD FD++ RR K 
Sbjct: 448 LKRLSEVRRFAEEMLDKRISIYDSTMNKLKEAFYKESRSSSARDKFDAIYRRWKA 502


>gi|255557793|ref|XP_002519926.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540972|gb|EEF42530.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 481

 Score =  590 bits (1522), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 284/481 (59%), Positives = 357/481 (74%), Gaps = 6/481 (1%)

Query: 21  SSTTTSPTSHNPHRPTRPRFPTHLDAPYI----SSSARIICEILAHASSDDIESALACTG 76
           S+   SP       P      TH +   I    S SAR + +IL   S  D+ESAL+ TG
Sbjct: 3   STDEYSPHQSQSRTPKPKSKSTHSNGVDIDIDISQSARTLSDILTRVSPHDMESALSSTG 62

Query: 77  IIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAV 136
           I  T D++HEVL+LSY +P+SAV+FFRWAGR    +PY+WNLMVD+LGKN  FE MW+A+
Sbjct: 63  INLTCDIIHEVLKLSYSNPASAVEFFRWAGRSGTHTPYSWNLMVDLLGKNQLFEAMWDAI 122

Query: 137 RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
           R MK++ VLS+ TFAS+F SYC AG + EA+MSFD+M  +G++QDV+AVNSLLSAIC ++
Sbjct: 123 RSMKQENVLSMATFASVFGSYCKAGSFSEAIMSFDIMDKYGIQQDVIAVNSLLSAICNED 182

Query: 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
           NQT +A+EF +R+K  + PDGD++AILLEGWEKEGN  +A   FGEMV    W+PE++ A
Sbjct: 183 NQTIKAVEFFDRIKLKIPPDGDTYAILLEGWEKEGNAAKAKNIFGEMVIHVGWSPENMPA 242

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
           Y  FL  L+R  Q D+A  FLR+MK + C P LKF+S+ALD+L+K ND  HAV +WDIMV
Sbjct: 243 YNAFLNLLVRESQTDDAFDFLRLMKEKGCLPGLKFYSDALDMLLKRNDVLHAVPMWDIMV 302

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
             G  LMPNL+MYN++IGLLCNN+D+DN FR FD MVFHGAFPD LTY MIF CL+KNK+
Sbjct: 303 DTG--LMPNLLMYNSMIGLLCNNNDIDNAFRLFDDMVFHGAFPDFLTYKMIFRCLVKNKK 360

Query: 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 436
           V +   FFHEMIKNE  PT L+CA AITM +  D+PE+AIEIWNY++++  LPL+ SAN 
Sbjct: 361 VSQAASFFHEMIKNENPPTHLDCAAAITMFMGGDDPEMAIEIWNYMVDDQELPLDESANA 420

Query: 437 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKT 496
           LLVGL NLGRLS+V RFAE+ML+RRI I+E TM KLK +FY E RS RD FDSL R+ K 
Sbjct: 421 LLVGLGNLGRLSEVSRFAEDMLDRRINIHESTMAKLKASFYKEGRSSRDRFDSLSRKWKA 480

Query: 497 S 497
           S
Sbjct: 481 S 481


>gi|449519571|ref|XP_004166808.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Cucumis sativus]
          Length = 503

 Score =  570 bits (1468), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 272/476 (57%), Positives = 355/476 (74%), Gaps = 7/476 (1%)

Query: 24  TTSPTSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDL 83
           T+SP S N      PRFP HLD P IS +A+ ICE+L   S ++++ AL  TG+ P+P+L
Sbjct: 34  TSSPRSRNS-----PRFPLHLDLPDISPAAKTICEVLVRVSRNEVDGALLATGLAPSPEL 88

Query: 84  VHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG 143
           V EVL++SY+SPSSA+ FFRWA +  + S Y+WNLM+D+LGKN  FE+MWN +R M+++ 
Sbjct: 89  VQEVLRVSYNSPSSAIKFFRWARQLAKQSAYSWNLMIDLLGKNELFEEMWNGIRTMRQEK 148

Query: 144 VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRAL 203
           +LSLPTF S+F SYC AG+  EA M+F+VM  + VE+DVVAVNSLLSAIC +ENQTS A 
Sbjct: 149 ILSLPTFVSVFGSYCSAGRSKEARMTFEVMDRYEVEKDVVAVNSLLSAICSEENQTSEAW 208

Query: 204 EFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT 263
           EF  + K+ +  DG+SFAILLEGWEKEGNVE+A  TF EMV+R  WNPE+V +Y+ FLIT
Sbjct: 209 EFFEKHKEKIPLDGESFAILLEGWEKEGNVEKAKVTFDEMVKRVGWNPENVSSYDAFLIT 268

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLM 323
           L+RG + ++A+K L  +K   C P LKF SNALD L++ ND+ HA+ LWDI+VG G  L+
Sbjct: 269 LVRGGRSEDAIKVLLKLKKNRCLPGLKFLSNALDSLIQQNDANHAILLWDIVVGSG--LV 326

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           PNLI+YNA+IGLL  N  +D+ FR  D MVFHGAFP+SLTYN+IF  LIKNK+V EV +F
Sbjct: 327 PNLIVYNAIIGLLSENSKIDDSFRLLDSMVFHGAFPNSLTYNLIFSSLIKNKKVKEVSQF 386

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
           F EM+KNE  PTP +CA AITML D  +PE AI+IWNY+ EN I P++ SAN LL+GL N
Sbjct: 387 FREMVKNECPPTPSSCAAAITMLFDGYDPETAIDIWNYMDENHIEPMDTSANALLIGLCN 446

Query: 444 LGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQM 499
           L RL++VRRFA++M+++RI I E TM  LK  FY +  + R+ +D L RR + S +
Sbjct: 447 LNRLTEVRRFADDMIDQRIDILESTMKLLKNCFYQQRGNFRENYDGLLRRWRASSI 502


>gi|449466215|ref|XP_004150822.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Cucumis sativus]
          Length = 487

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 265/460 (57%), Positives = 347/460 (75%), Gaps = 2/460 (0%)

Query: 40  FPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAV 99
           FP HLD P IS +A+ ICE+L   S ++++ AL  TG+ P+P+LV EVL++SY+SPSSA+
Sbjct: 29  FPLHLDLPDISPAAKTICEVLVRVSRNEVDGALLATGLAPSPELVQEVLRVSYNSPSSAI 88

Query: 100 DFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCG 159
            FFRWA +  + S Y+WNLM+D+LGKN  FE+MWN +R M+++ +LSLPTF S+F SYC 
Sbjct: 89  KFFRWARQLAKQSAYSWNLMIDLLGKNELFEEMWNGIRTMRQEKILSLPTFVSVFGSYCS 148

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
           AG+  EA M+F+VM  + VE+DVVAVNSLLSAIC +ENQTS A EF  + K+ +  DG+S
Sbjct: 149 AGRSKEARMTFEVMDRYEVEKDVVAVNSLLSAICSEENQTSEAWEFFEKHKEKIPLDGES 208

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           FAILLEGWEKEGNVE+A  TF EMV+R  WNPE+V +Y+ FLITL+RG + ++A+K L  
Sbjct: 209 FAILLEGWEKEGNVEKAKVTFDEMVKRVGWNPENVSSYDAFLITLVRGGRSEDAIKVLLK 268

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
           +K   C P LKF SNALD L++ ND+ HA+ LWDI+VG G  L+PNLI+YNA+IGLL  N
Sbjct: 269 LKKNRCLPGLKFLSNALDSLIQQNDANHAILLWDIVVGSG--LVPNLIVYNAIIGLLSEN 326

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
             +D+ FR  D MVFHGAFP+SLTYN+IF  LIKNK+V EV +FF EM+KNE  PTP +C
Sbjct: 327 SKIDDSFRLLDSMVFHGAFPNSLTYNLIFSSLIKNKKVKEVSQFFREMVKNECPPTPSSC 386

Query: 400 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
           A AITML D  +PE AI+IWNY+ EN I P++ SAN LL+GL NL RL++VRRFA++M++
Sbjct: 387 AAAITMLFDGYDPETAIDIWNYMDENHIEPMDTSANALLIGLCNLNRLTEVRRFADDMID 446

Query: 460 RRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQM 499
           +RI I E TM  LK  FY +  + R+ +D L RR + S +
Sbjct: 447 QRIDILESTMKLLKNCFYQQRGNFRENYDGLLRRWRASSI 486


>gi|359474755|ref|XP_002269803.2| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Vitis vinifera]
 gi|296085476|emb|CBI29208.3| unnamed protein product [Vitis vinifera]
          Length = 464

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 257/450 (57%), Positives = 340/450 (75%), Gaps = 2/450 (0%)

Query: 49  ISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRG 108
           IS  A+ + +I++  +   + +AL+ T I PTPD+V +VL+LSY + S+AV+FFRWAG  
Sbjct: 13  ISPDAKTLLQIISATAPHALVAALSATSIPPTPDVVQDVLRLSYSNSSAAVEFFRWAGLT 72

Query: 109 QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVM 168
           ++ S ++WNL+VD+LGKN +FE MW+A+R M+ +G LSL  F S+F SYC  G+ +EA+M
Sbjct: 73  RKHSAHSWNLIVDLLGKNSKFEPMWDAIRSMRNEGALSLSAFISVFGSYCSVGRVNEAIM 132

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
           SF+VM  +G+  DV A+N+LLSAIC +   T+ ALEF  ++K  + PDGD+F ILLEGWE
Sbjct: 133 SFEVMDRYGIPPDVAAMNALLSAICCEGGSTTLALEFFEKIKVKITPDGDTFMILLEGWE 192

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           +EGNV +A  TFGEMV R  W+P++++AY + L+TL+RG +V+EA+KFL VMKG+ C P 
Sbjct: 193 REGNVTKAKSTFGEMVVRLGWSPQNMVAYNSVLMTLVRGMEVEEAIKFLLVMKGKGCLPG 252

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
           LKFFSNALD+L+K NDSTHA+ LWDIM+  GF  MPNL+MYN +IG+LCN  D DN FRF
Sbjct: 253 LKFFSNALDVLLKQNDSTHAIALWDIMLDGGF--MPNLMMYNTIIGILCNAGDADNAFRF 310

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
            D+MVF+G F DS TYNMIF+CL+K+K+VHE  KFF EMIKNE  P P NCA AI M  D
Sbjct: 311 LDEMVFYGVFADSFTYNMIFQCLVKHKKVHEAGKFFIEMIKNECPPMPSNCAAAIAMCFD 370

Query: 409 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 468
            D+PE+AIEIW+Y++EN + P++ SAN LL+GL NL R SD RRFAE+ML+ +I I+E T
Sbjct: 371 GDDPEMAIEIWSYMIENSLSPVDESANALLIGLCNLRRFSDYRRFAEDMLDMKIKIHEST 430

Query: 469 MHKLKKAFYNESRSMRDIFDSLERRCKTSQ 498
           M KLK A Y + RS RD  DSL +R K SQ
Sbjct: 431 MEKLKNARYKDGRSARDTCDSLWKRWKVSQ 460


>gi|147859123|emb|CAN82548.1| hypothetical protein VITISV_005814 [Vitis vinifera]
          Length = 493

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 255/447 (57%), Positives = 338/447 (75%), Gaps = 2/447 (0%)

Query: 49  ISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRG 108
           IS  A+ + +I++  +   + +AL+ T I PTPD+V +VL+LSY + S+AV+FFRWAG  
Sbjct: 13  ISPDAKTLLQIISATAPHALXAALSATXIPPTPDVVQDVLRLSYSNXSAAVEFFRWAGLT 72

Query: 109 QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVM 168
           ++ S ++WNL+VD+LGKN +FE MW+A+R M+ +G LSL  F S+F SYC  G+ +EA+M
Sbjct: 73  RKHSAHSWNLIVDLLGKNSKFEPMWDAIRSMRNEGALSLSAFISVFGSYCSVGRVNEAIM 132

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
           SF+VM  +G+  DV A+N+LLSAIC +   T+ ALEF  ++K  + PDGD+F ILLEGWE
Sbjct: 133 SFEVMDRYGIPPDVAAMNALLSAICCEGGSTTLALEFFEKIKVKITPDGDTFMILLEGWE 192

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           +EGNV +A  TFGEMV R  W+P++++AY + L+TL+RG +V+EA+KFL VMKG+ C P 
Sbjct: 193 REGNVTKAKSTFGEMVVRLGWSPQNMVAYNSVLMTLVRGMEVEEAIKFLLVMKGKGCLPG 252

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
           LKFFSNALD+L+K NDSTHA+ LWDIM+  GF  MPNL+MYN +IG+LCN  D DN FRF
Sbjct: 253 LKFFSNALDVLLKQNDSTHAIALWDIMLDGGF--MPNLMMYNTIIGILCNAGDADNAFRF 310

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
            D+MVF+G F DS TYNMIF+CL+K+K+VHE  KFF EMIKNE  P P NCA AI M  D
Sbjct: 311 LDEMVFYGVFADSFTYNMIFQCLVKHKKVHEAGKFFIEMIKNECPPMPSNCAAAIAMCFD 370

Query: 409 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 468
            D+PE+AIEIW+Y++EN + P++ SAN LL+GL NL R SD RRFAE+ML+ +I I+E T
Sbjct: 371 GDDPEMAIEIWSYMIENSLSPVDESANALLIGLCNLRRFSDYRRFAEDMLDMKIKIHEST 430

Query: 469 MHKLKKAFYNESRSMRDIFDSLERRCK 495
           M KLK A Y + RS RD  DSL +R K
Sbjct: 431 MEKLKNARYKDGRSARDTCDSLWKRWK 457


>gi|226494576|ref|NP_001143685.1| uncharacterized protein LOC100276413 [Zea mays]
 gi|195624570|gb|ACG34115.1| hypothetical protein [Zea mays]
          Length = 467

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/443 (44%), Positives = 281/443 (63%), Gaps = 8/443 (1%)

Query: 58  EILAHASSDDIESALACTGIIPTPDLVHEVLQL--SYDSPSSAVDFFRWAGRGQRLSPYA 115
           EI+    + ++E+AL+  GI PT ++   VL+    Y  P SAV FFRWAG+    + YA
Sbjct: 26  EIICRVPAGEVEAALSACGIGPTAEVEELVLKSRECYKRPKSAVRFFRWAGQSVSHTAYA 85

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDG---VLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           WNL+VD+LGK   FE MW+A+R MK++G   ++S+ TFAS+F SYC AG   +A+ + DV
Sbjct: 86  WNLLVDILGKAAMFEPMWDAIRSMKQEGGGGLVSVATFASVFASYCAAGNIKDAIAALDV 145

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M  +G++ D VA+NSLLSAICR E +   A +   R K  + PDGD+FAILLE WEKEGN
Sbjct: 146 MDRYGLKHDAVALNSLLSAICRVEGRAQDAQDVFERTKATIPPDGDTFAILLEAWEKEGN 205

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
              A   FGEMV R  W+  +V AY++FL TL+RG  +DEA KFL+VM+ + C P + FF
Sbjct: 206 AVRAKSVFGEMVVRIGWDAANVSAYDSFLSTLVRGGLLDEAFKFLQVMRSKGCLPGINFF 265

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           S A+D++V+  D  +AV +W +MV     L+PN  MY+A+IGL CN   +D+     D+M
Sbjct: 266 STAVDLVVRKGDYLNAVAIWHMMVSEA-GLVPNFSMYSAMIGLHCNAGSIDDALGLLDEM 324

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
             +G F +S+TYN I E  IK+++  E E F  EM KNE  PT  NCA AI++      P
Sbjct: 325 PLNGVFANSVTYNTILEGFIKHRKAREAESFLTEMSKNEQLPTASNCAAAISLFFKEFNP 384

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
             AI++W  I+E+ I P E SA EL+ GL + GR ++V + A+EM++ R+ +   TM  +
Sbjct: 385 SAAIDVWRCIVEHNITPAEDSAKELIAGLLDFGRFTEVTKRADEMIDMRVELSRSTMENM 444

Query: 473 KKAFYNESRSMRDIFDSLERRCK 495
           K+AF    R     +D++ RR K
Sbjct: 445 KRAFAKAGRHQS--YDNIARRLK 465


>gi|223950475|gb|ACN29321.1| unknown [Zea mays]
 gi|414586333|tpg|DAA36904.1| TPA: hypothetical protein ZEAMMB73_204717 [Zea mays]
          Length = 468

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 198/443 (44%), Positives = 279/443 (62%), Gaps = 8/443 (1%)

Query: 58  EILAHASSDDIESALACTGIIPTPDLVHEVLQL--SYDSPSSAVDFFRWAGRGQRLSPYA 115
           EI+    + ++E+AL+  GI PT ++   VL+    Y  P SAV FFRWAG+    + YA
Sbjct: 27  EIICRVPAGEVEAALSACGIGPTAEVEELVLKSRECYKRPKSAVRFFRWAGQSVSHTAYA 86

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDG---VLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           WNL+VD+LGK   FE MW+A+R MK++G   ++S+ TFAS+F SYC AG   +A+ + DV
Sbjct: 87  WNLLVDILGKAAMFEPMWDAIRSMKQEGGGGLVSVATFASVFASYCAAGNIKDAIAALDV 146

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M  +G++ D VA+NSLLSAICR E +   A +   R K  + PDGD+FAILLE WEKEGN
Sbjct: 147 MDRYGLKHDAVALNSLLSAICRVEGRAQDAQDVFERTKATIPPDGDTFAILLEAWEKEGN 206

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
              A   FGEMV R  W+  +V AY++FL TL+RG  +DEA KFL+VM+ + C P + FF
Sbjct: 207 AVRAKSVFGEMVVRIGWDAANVSAYDSFLSTLVRGGLLDEAFKFLQVMRSKGCLPGINFF 266

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           S A+D++V+  D  +AV +W +MV     L+PN  MY+A+IGL CN   +D+     D+M
Sbjct: 267 STAVDLVVRKGDYLNAVAIWHMMVSEA-GLVPNFSMYSAMIGLHCNAGSIDDALGLLDEM 325

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
             +G F +S+TYN I E  IK+++  E E F  EM KNE  PT  NCA AI++      P
Sbjct: 326 PLNGVFANSVTYNTILEGFIKHRKAREAESFLTEMSKNEQLPTASNCAAAISLFFKEFNP 385

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
             AI++W  I+E+ I P E SA EL+ GL   GR ++V + A+EM++ R+ +   TM  +
Sbjct: 386 SAAIDVWRCIVEHNITPAEDSAKELIAGLLEFGRFTEVTKRADEMIDMRVELSRSTMENM 445

Query: 473 KKAFYNESRSMRDIFDSLERRCK 495
           K+ F    R     +D++ RR K
Sbjct: 446 KRGFAKAGRHQS--YDNIARRLK 466


>gi|115459468|ref|NP_001053334.1| Os04g0520900 [Oryza sativa Japonica Group]
 gi|21741854|emb|CAD41444.1| OSJNBa0019D11.15 [Oryza sativa Japonica Group]
 gi|113564905|dbj|BAF15248.1| Os04g0520900 [Oryza sativa Japonica Group]
 gi|116310729|emb|CAH67525.1| OSIGBa0131L05.6 [Oryza sativa Indica Group]
 gi|125549050|gb|EAY94872.1| hypothetical protein OsI_16672 [Oryza sativa Indica Group]
 gi|125591012|gb|EAZ31362.1| hypothetical protein OsJ_15488 [Oryza sativa Japonica Group]
 gi|215697100|dbj|BAG91094.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 464

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 201/450 (44%), Positives = 283/450 (62%), Gaps = 7/450 (1%)

Query: 50  SSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQ--LSYDSPSSAVDFFRWAGR 107
           S  A    EIL      D E+ L+  GI PT ++  +VL+  + Y  P SAV FF W+GR
Sbjct: 16  SPRAEAFLEILGRVQPGDAEAELSSCGIGPTAEVAEQVLRSRVCYSRPKSAVRFFVWSGR 75

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG--VLSLPTFASIFDSYCGAGKYDE 165
             + + YAWNL+VD+LGK    E MW+AVR M ++G  ++++ TFASIF SYC +G   +
Sbjct: 76  SVKHTGYAWNLLVDILGKADMEEPMWDAVRTMNKEGGGLVTVATFASIFSSYCASGNLRK 135

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           AV +FDVM  +GVE D VA+NSLLSA+CR E +   A +   R K  V PD D+F ILLE
Sbjct: 136 AVEAFDVMGKYGVEPDAVALNSLLSAMCRGEGRAQAAQDLFERTKATVAPDADTFGILLE 195

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
            WEKEGN + A  TFGEM+ R  W+  ++ AY+ FL TL+RG Q  EALKFL+VM+ + C
Sbjct: 196 AWEKEGNAQRAKSTFGEMIVRVGWDAGNMPAYDAFLSTLVRGDQFGEALKFLQVMRSKGC 255

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P LKFF+ A+D++V+  D  +++ +W +M+     L+PNL MYNA+I L C+  D D  
Sbjct: 256 LPGLKFFARAIDLVVRKRDYANSLAIWQMMISDA-GLVPNLPMYNAMIDLCCSVGDTDYA 314

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
            R  D+M F+G F D +TYN I E LIK ++  E E F  EM KNE  P+P NCA AI+M
Sbjct: 315 LRMLDEMPFNGVFADFITYNAILEGLIKQRKAREAEAFLAEMSKNEQLPSPTNCAAAISM 374

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 465
                 P  AI++W+ I+E+ I P + SA EL+VGL + GR ++V+++ +EML+  I + 
Sbjct: 375 FSKEFNPSAAIDVWHCIVEHQITPADESARELIVGLLDFGRFAEVKKYTDEMLDMGIELP 434

Query: 466 EVTMHKLKKAFYNESRSMRDIFDSLERRCK 495
           + T+  +K+ F  +       +D + RR K
Sbjct: 435 QSTIDNMKRTF--DKVGKHHTYDHIARRPK 462


>gi|357164743|ref|XP_003580152.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like isoform 1 [Brachypodium distachyon]
 gi|357164746|ref|XP_003580153.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like isoform 2 [Brachypodium distachyon]
          Length = 465

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 198/449 (44%), Positives = 282/449 (62%), Gaps = 7/449 (1%)

Query: 51  SSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQ--LSYDSPSSAVDFFRWAGRG 108
           S A    EI+      ++E+AL    ++PT D+  +VL+  + Y  P SAV FFRWA + 
Sbjct: 18  SPAEAFLEIVERTPLGEVETALISCNVVPTADVAEQVLKSDICYSRPKSAVRFFRWASKS 77

Query: 109 QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM--KEDGVLSLPTFASIFDSYCGAGKYDEA 166
            +L+ YAWNL++D+LGK   FE MW+A+R M  +E G+LS+ TFAS+F SYC  G + +A
Sbjct: 78  LKLTAYAWNLLIDILGKASMFEPMWDAIRSMSQEEGGLLSVATFASMFASYCSRGNFKDA 137

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
             +FDVM ++GV  D VA+NSLLSA+CR+++    AL+   R K  V PD D+FAILLE 
Sbjct: 138 ARAFDVMELYGVPPDAVALNSLLSAMCRRDDGAQAALDLFERSKGKVAPDADTFAILLEA 197

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
           WEKEGNV+ A  TFGEM+ R  W+  ++ A++ FL TL+RG Q +EALKFL VM+   C 
Sbjct: 198 WEKEGNVQRAKSTFGEMIVRVGWDSRNIPAHDAFLTTLVRGDQFNEALKFLNVMRTNGCL 257

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346
           P LKFF+NA+D++V+  D  +A+ +W +MV     ++PNL MYNA+I L  +  + D  F
Sbjct: 258 PGLKFFANAIDLVVRKADYVNAIPIWQMMVSDA-GIVPNLPMYNAIIALCSSVGNTDYAF 316

Query: 347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406
              D+M  +G F DS+TYN I E LIK  +  E E F  EM KNE  P+  NCA AI++ 
Sbjct: 317 NMLDEMPLNGVFADSVTYNAILEGLIKQCKARETEGFLMEMSKNEQLPSAPNCAAAISLF 376

Query: 407 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYE 466
                P  AI++W+ I+E+ I P E SA EL+ GL +  R + V+ + +EML+  I + +
Sbjct: 377 SKEFNPSAAIDVWHCIVEHQITPAEESAKELITGLLDFSRFAQVKIYTDEMLDMGIELPQ 436

Query: 467 VTMHKLKKAFYNESRSMRDIFDSLERRCK 495
             + K+K  F    +  R  +D + RR K
Sbjct: 437 SIIEKMKHTFDKAGK--RQTYDQIARRLK 463


>gi|242073718|ref|XP_002446795.1| hypothetical protein SORBIDRAFT_06g022830 [Sorghum bicolor]
 gi|241937978|gb|EES11123.1| hypothetical protein SORBIDRAFT_06g022830 [Sorghum bicolor]
          Length = 468

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/479 (43%), Positives = 286/479 (59%), Gaps = 24/479 (5%)

Query: 25  TSPTSHNPHRP---TRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTP 81
            +    +P R    + PR    LD         IIC + A     ++E+AL+  GI PT 
Sbjct: 3   AAAAEKSPEREAEESNPRAEAFLD---------IICRVPA----GEVEAALSACGIGPTA 49

Query: 82  DLVHEVLQLS--YDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM 139
           ++   VL+    Y  P SAV FFRWAG     + YAWNL+VD+LGK   FE MW+A+R M
Sbjct: 50  EVAELVLKSCECYKRPKSAVRFFRWAGLSLSHTAYAWNLLVDILGKAAMFEPMWDAIRSM 109

Query: 140 KEDG---VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
            ++G   ++S+ TFAS+F SYC +G   +A+ + DVM  +G++ D VA+NSLLSAICR E
Sbjct: 110 HQEGGGRLVSVATFASVFASYCASGNLKDAIAALDVMDRYGLKPDAVALNSLLSAICRVE 169

Query: 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
            +   A +   R K  + PD D+FAILLE  EKEGN   A   FGEMV R  W+  +V A
Sbjct: 170 GRAQAAHDVFERTKATIPPDADTFAILLEACEKEGNAMRAKSVFGEMVVRVGWDAANVPA 229

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
           Y++FL TL+RG   DEA KFL+VM+ + C P +KFF+ A+D++V   D  +AV +W++MV
Sbjct: 230 YDSFLSTLVRGGLFDEAFKFLQVMRSKGCLPGIKFFATAVDLVVLKRDYPNAVAIWNLMV 289

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
                L+PN  MYNA+IGL CN   +D      D+M  +G F +S+TYN I E  IK+ +
Sbjct: 290 SEA-GLVPNFSMYNAMIGLYCNAGAMDYALGMLDEMPLNGVFANSVTYNTILEGFIKHCK 348

Query: 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 436
             E E+F  EM KNE  PT  NCA AI++      P  AI++W  I+E+ I P E SA E
Sbjct: 349 AREAERFLTEMSKNEQLPTASNCAAAISLFFKEFNPSAAIDVWRCIVEHNITPAEDSAKE 408

Query: 437 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCK 495
           L+ GL + GRL++V R A+EM++ R+ +   TM  +K+AF    R     +D + RR K
Sbjct: 409 LIAGLLDFGRLTEVERRADEMIDMRVELSRSTMDNMKRAFAKAQRHQS--YDRIARRLK 465


>gi|296087160|emb|CBI33534.3| unnamed protein product [Vitis vinifera]
          Length = 506

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/480 (43%), Positives = 298/480 (62%), Gaps = 9/480 (1%)

Query: 20  SSSTTTSPTSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIP 79
           SSSTT S T H    P RP FPT+L+ P +S   R++CEI+A+  S  +E  L  T I  
Sbjct: 32  SSSTTDSATHH--QTPKRPSFPTYLETPNLSPKVRLLCEIIANTPSSTVEEVLHDTAIRV 89

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVR 137
           +P+ V + L+LSY  P SAV FFRW+G       SPY+WNL+VD+LGKN  F+ MW+AV+
Sbjct: 90  SPEDVEDSLKLSYGFPGSAVKFFRWSGHQLNDNHSPYSWNLVVDMLGKNFLFDAMWDAVK 149

Query: 138 VMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
            MK+ G+LSL TFASIF SY  A +  EA+M+FDVM  +G  +D+VA+NSLLSAICR + 
Sbjct: 150 SMKKQGLLSLATFASIFSSYVIADRVREAIMTFDVMEQYGCPRDIVALNSLLSAICR-DG 208

Query: 198 QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
           +T +A EFL  V+ ++ PD D++AILLEGWE EGN   A +TF EMV    W+P +V AY
Sbjct: 209 RTVQAAEFLRNVRGLIRPDADTYAILLEGWESEGNCGAARQTFDEMVMDIGWDPGNVSAY 268

Query: 258 ETFLITLIRGKQ-VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
           ++FL  L+ G     EA+KF  +M+   C P ++F+   L   VK +DS  A  LW  M+
Sbjct: 269 DSFLNALLHGPDGRREAMKFFEIMRDRQCSPGMRFYRIGLQECVKTSDSKGAQLLWQTML 328

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
                  P+  MYN++I L C+ D++       D+MV +GAFPDS TYN++F  LI+ ++
Sbjct: 329 SRNI-CRPDTEMYNSMIALHCSCDNIVMARGMLDEMVCNGAFPDSETYNVLFRFLIRRRK 387

Query: 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 436
           + E    F EM++NE  P   NC  A+ + LD  +   AI++W YI+EN    LE + N 
Sbjct: 388 LEEAFSIFSEMVQNECVPDLTNCNAAVRIYLDLGDVYKAIKVWKYIIENHDSGLEETGNL 447

Query: 437 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKT 496
           L+ GLR+  R+ +  ++A++M+ R I +   T+ KLK A     +    ++D L R+ KT
Sbjct: 448 LVTGLRDHDRIPEAVKYAKDMIVRGIKLTSSTLSKLKHALVEVGKG--PVYDELLRKWKT 505


>gi|225453152|ref|XP_002272930.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Vitis vinifera]
          Length = 502

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/480 (43%), Positives = 298/480 (62%), Gaps = 9/480 (1%)

Query: 20  SSSTTTSPTSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIP 79
           SSSTT S T H    P RP FPT+L+ P +S   R++CEI+A+  S  +E  L  T I  
Sbjct: 28  SSSTTDSATHH--QTPKRPSFPTYLETPNLSPKVRLLCEIIANTPSSTVEEVLHDTAIRV 85

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVR 137
           +P+ V + L+LSY  P SAV FFRW+G       SPY+WNL+VD+LGKN  F+ MW+AV+
Sbjct: 86  SPEDVEDSLKLSYGFPGSAVKFFRWSGHQLNDNHSPYSWNLVVDMLGKNFLFDAMWDAVK 145

Query: 138 VMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
            MK+ G+LSL TFASIF SY  A +  EA+M+FDVM  +G  +D+VA+NSLLSAICR + 
Sbjct: 146 SMKKQGLLSLATFASIFSSYVIADRVREAIMTFDVMEQYGCPRDIVALNSLLSAICR-DG 204

Query: 198 QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
           +T +A EFL  V+ ++ PD D++AILLEGWE EGN   A +TF EMV    W+P +V AY
Sbjct: 205 RTVQAAEFLRNVRGLIRPDADTYAILLEGWESEGNCGAARQTFDEMVMDIGWDPGNVSAY 264

Query: 258 ETFLITLIRGKQ-VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
           ++FL  L+ G     EA+KF  +M+   C P ++F+   L   VK +DS  A  LW  M+
Sbjct: 265 DSFLNALLHGPDGRREAMKFFEIMRDRQCSPGMRFYRIGLQECVKTSDSKGAQLLWQTML 324

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
                  P+  MYN++I L C+ D++       D+MV +GAFPDS TYN++F  LI+ ++
Sbjct: 325 SRNI-CRPDTEMYNSMIALHCSCDNIVMARGMLDEMVCNGAFPDSETYNVLFRFLIRRRK 383

Query: 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 436
           + E    F EM++NE  P   NC  A+ + LD  +   AI++W YI+EN    LE + N 
Sbjct: 384 LEEAFSIFSEMVQNECVPDLTNCNAAVRIYLDLGDVYKAIKVWKYIIENHDSGLEETGNL 443

Query: 437 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKT 496
           L+ GLR+  R+ +  ++A++M+ R I +   T+ KLK A     +    ++D L R+ KT
Sbjct: 444 LVTGLRDHDRIPEAVKYAKDMIVRGIKLTSSTLSKLKHALVEVGKG--PVYDELLRKWKT 501


>gi|356569552|ref|XP_003552963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Glycine max]
          Length = 485

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 201/460 (43%), Positives = 293/460 (63%), Gaps = 7/460 (1%)

Query: 40  FPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAV 99
           FP+  D P + S+ + +C ++A  S+  +E +L    I  TP  V EVL+LSY  P  AV
Sbjct: 29  FPSFQDIPNLPSNIKSLCHLIATTSAASVEHSLQSAAISVTPHDVEEVLKLSYGFPGQAV 88

Query: 100 DFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSY 157
            FFRW+GR      +PY+WNL+VD+LGKN  F+ MW+A++ M ++G+LSL TFAS+F SY
Sbjct: 89  KFFRWSGRHLNDNHTPYSWNLVVDILGKNRFFDAMWDAIKSMNKEGLLSLATFASVFSSY 148

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG 217
             A +  EA+M+F++M  + V +DVVA+NSLLSAIC    +T  A ++L   KK+V PD 
Sbjct: 149 VAADRIREAIMAFEIMDNYCVVRDVVALNSLLSAIC-SNGRTLDACDYLQVAKKLVRPDT 207

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ-VDEALKF 276
           D++AIL+EGWE E  V  A +TF EMV    W+P +V AY++FL TL+RG   + EA+KF
Sbjct: 208 DTYAILMEGWEGENGVVGAKETFAEMVIEIGWDPLNVPAYDSFLCTLVRGPDGLLEAIKF 267

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLL 336
           +  M+   CFP ++F   ALD  VK +D   A   W+++V +G  + P   MYN +IGL 
Sbjct: 268 VDSMRDRRCFPGVRFLKAALDECVKSHDVRTAEFFWEVLV-VGKVVQPTAEMYNLMIGLC 326

Query: 337 CNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 396
           C   D D   R  D+MV+ GAFPD  TYN++F+ LIK +++ E    F EM+KNE  P  
Sbjct: 327 CYRGDTDAARRMLDEMVYQGAFPDVETYNLLFKFLIKGRKLREASVVFAEMVKNECVPEQ 386

Query: 397 LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 456
            NC  A+   +D  EP +AI++W Y++EN    LE +AN L+VGLR+L RL +  ++AE+
Sbjct: 387 DNCDAAVKAYVDCGEPVMAIKVWKYLVENYKKDLERTANFLVVGLRDLNRLPEAVKYAED 446

Query: 457 MLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKT 496
           M++R I +   TM KL+++   E R    +++ L R+ K+
Sbjct: 447 MIDREIRLSSNTMSKLRQSLIKERREF--VYEDLLRKSKS 484


>gi|449445204|ref|XP_004140363.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Cucumis sativus]
          Length = 519

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/476 (41%), Positives = 300/476 (63%), Gaps = 7/476 (1%)

Query: 26  SPTSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVH 85
           +P+ H PH+ + P F ++LD P +    +++CEI+A++ S D+E AL  TGI  T   V 
Sbjct: 47  NPSPHPPHKNSTPHFLSYLDFPNLPFQIKLMCEIIANSPSLDVEKALEDTGIHATQQDVE 106

Query: 86  EVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG 143
           EVL+LSY  P S+V FFRW+GR    + SPYAWNL++D+LGKN  F+ MW+A++ MK +G
Sbjct: 107 EVLKLSYRFPGSSVKFFRWSGRKLNDQHSPYAWNLIIDMLGKNLYFDPMWDAMKSMKSEG 166

Query: 144 VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRAL 203
           +LSL TFAS+F SY  A +  +A+M+F+VM  +G   DVVA NSLLSAICR  N T  A 
Sbjct: 167 LLSLATFASVFSSYVVANRVKDAIMAFEVMDTYGCPHDVVAFNSLLSAICRDGN-TKDAD 225

Query: 204 EFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT 263
           EFL   K+ + PD DS+AI+LEGWE EGN   A +TFGEM+E   W+P +  AY +FL  
Sbjct: 226 EFLQIAKRKIRPDLDSYAIVLEGWESEGNTVCAKQTFGEMIEEIGWDPTNTPAYNSFLCV 285

Query: 264 LIRGKQ-VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL 322
           L+R    +  AL   + +K + C+P  KFF  ALD  +K  D      LW+ ++    N 
Sbjct: 286 LLRDPNGLQRALVTFQRLKDKMCYPGFKFFKLALDECIKCGDIKSGKYLWNEIIQ-SINF 344

Query: 323 MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
            P+  M+N++I L C+ +D D   R  D+M+  GAFP++ TYN++F+ L+K +++ +   
Sbjct: 345 QPDTYMFNSMIALCCHQNDTDEARRLLDEMICFGAFPNAETYNLLFQFLLKGRKLRDASA 404

Query: 383 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 442
            F EMIKNE+ P+  NC  AI + +++ +P  AI++W  +L+N    LE + N L+V L+
Sbjct: 405 IFDEMIKNEFIPSHANCNAAIRIYIESQDPNGAIKVWKCMLKNYDSDLEETGNFLIVRLQ 464

Query: 443 NLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQ 498
           +  RL +  ++A EM++R I + + T+ KLK + +   +    ++D L  + K S+
Sbjct: 465 DQKRLPEAVKYAHEMVDRAIKLKDSTLAKLKHSLFEVRK--ESMYDELMVKLKCSE 518


>gi|413921119|gb|AFW61051.1| hypothetical protein ZEAMMB73_101655 [Zea mays]
          Length = 461

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/445 (43%), Positives = 274/445 (61%), Gaps = 6/445 (1%)

Query: 53  ARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQL--SYDSPSSAVDFFRWAGRGQR 110
           A    EI+    + ++E+AL+  GI PT ++   VL+    Y  P SAV FFRWAG+   
Sbjct: 19  AEAFLEIICRVPAGEVEAALSACGIGPTAEVEELVLKSRECYKRPKSAVRFFRWAGQSVS 78

Query: 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSF 170
            + YAWNL+VD+LGK   FE MW+A+R MK++G   L + A+ F SYC AG   +A+ + 
Sbjct: 79  HTAYAWNLLVDILGKAAMFESMWDAIRSMKQEGGSGLVSVAT-FASYCTAGNIKDAIAAL 137

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
           DVM  +G++ D VA+NSLLSAICR E +   A +   R K  + PDGD+FAILLE WEKE
Sbjct: 138 DVMDRYGLKHDAVALNSLLSAICRVEGRVQDAQDVFERTKATIPPDGDTFAILLEAWEKE 197

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           GN   A   FGEMV R  W+  +V AY++FL TL+RG  +DEA KFL+VM+ + C P + 
Sbjct: 198 GNAVRAKSVFGEMVVRIGWDAANVSAYDSFLSTLVRGGLLDEAFKFLQVMRSKGCLPGIN 257

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
           FFS A+D++V+  D  +AV +W +MV     L+PN  MY+A+IGL CN   +D+     D
Sbjct: 258 FFSTAVDLVVRKGDYLNAVAIWHMMVSEA-GLVPNFSMYSAMIGLHCNAGSIDDALGLLD 316

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
           +M  +  F +S+TY+ I E  IK+++  E E F  EM KNE  PT  NCA AI++     
Sbjct: 317 EMPLNDVFANSVTYHTILEGFIKHRKAREAESFLTEMSKNEQLPTASNCAAAISLFFKEF 376

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 470
            P  +I++W  I E+ I   E SA EL+ GL + GR ++V + A+EM++ R+ +   TM 
Sbjct: 377 NPSASIDVWRCIEEHNITLAEDSAKELIAGLLDFGRFTEVTKRADEMIDMRVELSRSTME 436

Query: 471 KLKKAFYNESRSMRDIFDSLERRCK 495
            +K+AF    R     +D++ RR K
Sbjct: 437 NMKRAFAKAGRHQS--YDNIARRLK 459


>gi|224065166|ref|XP_002301697.1| predicted protein [Populus trichocarpa]
 gi|222843423|gb|EEE80970.1| predicted protein [Populus trichocarpa]
          Length = 499

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/468 (42%), Positives = 299/468 (63%), Gaps = 10/468 (2%)

Query: 37  RPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPS 96
           +P F ++L+ P +  + +++CEI+A+  S ++ES L  T I      V +VL+LSY SP 
Sbjct: 36  KPSFQSYLETPNLPPTIKLLCEIIANTPSHNVESVLDATVIRVKQTDVEQVLKLSYSSPG 95

Query: 97  SAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIF 154
           SAV FFRWAG     + SPY+WNL+VD+LGKN  F+ MW A++ MK + ++SL TFAS+F
Sbjct: 96  SAVKFFRWAGLQLNDKHSPYSWNLVVDLLGKNSMFDAMWGAIKSMKRENLVSLATFASVF 155

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD 214
            SY    +  EA+M+F+VM  +G  ++VVA+NSLLSAICR E +T  A+EFL+  K  + 
Sbjct: 156 SSYVIVDRVKEAIMTFEVMDQYGCTRNVVALNSLLSAICR-EGRTFDAVEFLHVAKNRIL 214

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ-VDEA 273
           PD DS+AILLEGWEKE NV  A  TF +MV    W+P +V AY+TFL TL+ G   + EA
Sbjct: 215 PDADSYAILLEGWEKEMNVASARTTFADMVSMVGWDPRNVPAYDTFLSTLLMGYDGLREA 274

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG-IGFNLMPNLIMYNAV 332
           +K    MK   CFP +KFF  AL+  +K ND   A+ +W+ +V  +GF   P++ +YN +
Sbjct: 275 MKHFDTMKDRGCFPGVKFFRLALEECLKCNDVRAAMLIWETLVARVGFR--PDIQLYNLM 332

Query: 333 IGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 392
           IG+ C ++  D   +F D+M+++G FPDS TYN++F+ LIK K++ E     +EMIKNE+
Sbjct: 333 IGIHCYDNQTDIANKFLDEMIYNGVFPDSQTYNVLFQYLIKYKKLKEASFVLNEMIKNEF 392

Query: 393 QPTPLNCATAITMLLDADEPEIAIEIWNYILEN-GILPLEASANELLVGLRNLGRLSDVR 451
            P   NC  AI   +D+ EP +AI++W  ++EN G   LE + N L+V LR    + +  
Sbjct: 393 FPNKTNCNAAIKAYMDSKEPYMAIKVWKCMMENYGESDLEEAGNMLVVELRYHHMVPEAV 452

Query: 452 RFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQM 499
           ++AE M+ + I +   ++ KLK+    E + +  +++ L R+ K  ++
Sbjct: 453 KYAEVMIEKGIKLTSSSLSKLKQMLNEEKKPI--LYEELLRKWKAHRV 498


>gi|255583417|ref|XP_002532468.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527826|gb|EEF29924.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 510

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/464 (41%), Positives = 298/464 (64%), Gaps = 9/464 (1%)

Query: 38  PRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSS 97
           P FP++L+ P +S   +++CEI+A   S  +E+ L  TG+  +   V +V++LSY  P  
Sbjct: 52  PTFPSYLETPNLSPKIKLLCEIIAKIPSSTVETILDETGLYVSQYDVEQVIKLSYSFPGP 111

Query: 98  AVDFFRWAG-RGQ-RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFD 155
           AV FFRWAG R Q   SPY+WNL+VD+LGKN  F+ MW+A++ MK   ++SL TFAS+F 
Sbjct: 112 AVKFFRWAGFRLQDNHSPYSWNLVVDLLGKNCLFDAMWDAIKSMKSKELVSLATFASVFG 171

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDP 215
           SY  AG+  +A+ +F+VM+ +GV +DVVA+NSLLSAICR + +T  A++FL   K  + P
Sbjct: 172 SYVTAGRVKDAIFTFEVMNQYGVVRDVVALNSLLSAICR-DGKTVDAVDFLFVAKNSIKP 230

Query: 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK-QVDEAL 274
           D D+FAILLEGWEKE N+  + +TF EMV    W+P +  AY+TFL TL+ G+   +E +
Sbjct: 231 DADTFAILLEGWEKELNLVNSRQTFDEMVREIGWDPANTPAYDTFLCTLLMGRIGFNEVI 290

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI-GFNLMPNLIMYNAVI 333
           +FL +MK + C P ++FF  A++  +K+ND   A  +W++M+   GF   P++ MYN +I
Sbjct: 291 EFLEIMKEKRCCPGMRFFRAAIEECLKVNDVRVAGLIWEVMMETNGFR--PDIEMYNLMI 348

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
            L C  ++ D   RF D+MV++G FPD  TYN++F+ LIK++++ E    F+EMIKNE  
Sbjct: 349 SLYCYTNNTDIALRFLDEMVYNGVFPDRQTYNLLFQFLIKSRKLKEASVLFNEMIKNECL 408

Query: 394 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 453
           P   NC+ A+ + + + +P +AI++W  ++EN  L LE + N L+V L +L    +  ++
Sbjct: 409 PNQANCSAAVRVFMHSKDPYMAIKVWKCMIENYELDLEETGNLLIVELCDLHMDPEAVKY 468

Query: 454 AEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTS 497
           AE M+ + I +   TM KLK       +    +++ L R+ K  
Sbjct: 469 AESMIGKGIKVTSPTMEKLKLCLKQARKEF--VYERLLRKWKAG 510


>gi|148906806|gb|ABR16549.1| unknown [Picea sitchensis]
          Length = 524

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 192/446 (43%), Positives = 271/446 (60%), Gaps = 9/446 (2%)

Query: 55  IICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLS 112
           I+  IL       +E+AL   G+  +   V +VL+LSY +   A+ FFRW+G    ++ S
Sbjct: 78  IVSNILKKPPRMGVENALNELGLEVSIQFVEDVLKLSYGAGMEAMKFFRWSGLKLSRKHS 137

Query: 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           P AWNL+VD+LGK   F+ MW+ ++VMK  G++S+ T +S+F +Y  AGK  EA M+FDV
Sbjct: 138 PLAWNLLVDLLGKEKLFDAMWDCIKVMKNQGIVSMETMSSVFGNYVQAGKVAEARMTFDV 197

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           +  +G  QDVVA+N  LSA CR + Q+  ALEF ++VK+ + PD D++A+LLEG E EGN
Sbjct: 198 IEQYGCPQDVVALNCFLSAFCRYK-QSKEALEFFDKVKEKIAPDADTYALLLEGLEIEGN 256

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           V +A  TFGEM+ R  W P +  AY  FL TL+ G QV+EALKFL VMK   C P L FF
Sbjct: 257 VSKARTTFGEMIIRHGWLPNNTSAYNAFLSTLVNGSQVEEALKFLAVMKTRKCLPDLGFF 316

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC--NNDDVDNVFRFFD 350
            N L IL +  D+ +A  LW++M   G  L  +L  YN +IG+ C  N   VD  +R  D
Sbjct: 317 RNTLQILYQRKDTKNAYGLWELMKQSGILL--DLPSYNTMIGVFCSANPIQVDFAYRLLD 374

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
           +MVF G FPD  TYN IFE LI  ++V E    F EM KN++ P   N   AI M  +AD
Sbjct: 375 EMVFTGIFPDFKTYNTIFEALITARKVEEASSIFREMTKNDFCPLYANYVMAIKMYFEAD 434

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 470
           +PE+A+ +W ++++  I P    A  L+ G  +LGR S+  +++ E + R + I   TM 
Sbjct: 435 DPEMAVMMWKHMIQKAIFPKSDCAAILIDGFCDLGRASEALKYSLEAITRGVQIPVETMT 494

Query: 471 KLKKAFYNESRSMRDIFDSLERRCKT 496
           KLK A  +     +D +  LE++ K+
Sbjct: 495 KLKNA--SRQAGKQDAYGQLEKKMKS 518


>gi|356539840|ref|XP_003538401.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Glycine max]
          Length = 486

 Score =  362 bits (928), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 190/460 (41%), Positives = 285/460 (61%), Gaps = 7/460 (1%)

Query: 40  FPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAV 99
           FP+  D P + S+ + +C ++A  S+  +E +L    I   P  V EVL+LSY  P  +V
Sbjct: 30  FPSFQDIPNLPSNIKSLCHLIATTSAATVEHSLQSAAISVIPHDVEEVLKLSYGFPGQSV 89

Query: 100 DFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSY 157
            FFRW+GR      +PY+WNL+VD+LG+N  F+ MW+AV+ M ++G+LSL TFAS+F SY
Sbjct: 90  KFFRWSGRHLNDNHTPYSWNLVVDILGRNRFFDPMWDAVKSMNKEGLLSLATFASVFSSY 149

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG 217
             A +  EA+M+F++M  +G  +D  A+NSLLSAIC    +T  A ++L   KK V PD 
Sbjct: 150 VAADRIREAIMAFEIMDNYGCVRDAFALNSLLSAIC-SNGRTLDACDYLQVAKKFVRPDT 208

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ-VDEALKF 276
           D++AIL+EGWE E ++  A +TF EMV    W+P +V AY++FL TL+RG   + EA+KF
Sbjct: 209 DTYAILMEGWEGEKSMVSAKETFAEMVIEIGWDPANVPAYDSFLCTLVRGHDGLLEAIKF 268

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLL 336
           +  M+   C+P ++F   ALD  VK +D   A   W+++V +G  L P   MYN +IGL 
Sbjct: 269 VDSMRDRRCYPGVRFLKAALDECVKCHDVRTAEFFWEVLV-VGKVLQPTSEMYNLMIGLC 327

Query: 337 CNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 396
           C   D D   R   +MV+ GAFPD +TYN++F+ L+K +++ E    F EM++NE  P  
Sbjct: 328 CYRGDTDAARRMLHEMVYQGAFPDVVTYNLLFKFLLKGRKLREASSVFAEMVQNECVPEQ 387

Query: 397 LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 456
            NC  A+   +D  EP +AI++W  ++EN    LE +AN L+VGL NL R     ++AE+
Sbjct: 388 DNCDLAVKAYVDCGEPVMAIKVWKCLVENYKKGLEQTANFLVVGLCNLNRPQVAVKYAED 447

Query: 457 MLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKT 496
           M+ R I +   T+ KL+++   E R    +++ L R+ K+
Sbjct: 448 MIGRGISLSSSTLSKLRQSLVKERREY--VYEDLLRKWKS 485


>gi|116787233|gb|ABK24422.1| unknown [Picea sitchensis]
          Length = 504

 Score =  355 bits (912), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 197/497 (39%), Positives = 278/497 (55%), Gaps = 15/497 (3%)

Query: 12  IKNKIIPSSSSTTTSPTS-HNPHRPTRPRFPTHLDA---PYISSSARIICEILAHASSDD 67
           + N   PS  ++   P     P +P R      LD    P  +    I+  IL       
Sbjct: 5   LHNNPTPSLWASVAPPVQLQQPLQPPRILKGPGLDPSQYPPTTPIEVIVSNILKKPPQMG 64

Query: 68  IESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGK 125
           IE+ L   G+  +   V +VL+LSY +   A+ FFRWAG     + SP AWNL+VD+LG 
Sbjct: 65  IENTLNGLGLGVSIKFVEDVLKLSYGAGMEAMKFFRWAGLKLSSKHSPLAWNLLVDLLGS 124

Query: 126 NGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAV 185
           +  F+ MW+ +++MK  G++S  T +S+F +Y  AGK DEA M+F+VM  +G  QDVVA+
Sbjct: 125 DKLFDAMWDCIKIMKNQGIVSTETLSSVFGNYVQAGKVDEARMTFEVMEQYGCRQDVVAL 184

Query: 186 NSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245
           N  +SA+CR + Q   ALEF + VK+ + PD D++A+LLEGWE EGNV  A  TFGEM+ 
Sbjct: 185 NCYISALCRYK-QVKAALEFFDSVKERIAPDADTYALLLEGWEIEGNVSNARSTFGEMIA 243

Query: 246 RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS 305
           R  W P +  AY  FL TL+ G QVDEALK+L VMK + C P L FF N L IL +    
Sbjct: 244 RLGWMPNNTSAYNAFLSTLVNGFQVDEALKYLGVMKTKKCLPDLGFFRNTLQILYQRKAM 303

Query: 306 THAVQLWDIMVGIGF----NLMPNLIMYNAVIGLLC--NNDDVDNVFRFFDQMVFHGAFP 359
                LW +M    F     ++P+L  YN +IG+ C  N   V++ +   D+M   GAFP
Sbjct: 304 KEPYGLWQLMSLWEFMRQSGIVPDLPTYNTMIGVCCSANPIQVNSAYSLLDEMALTGAFP 363

Query: 360 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 419
           DS TYN IFE  I  ++V E    F EM KNE+ P   N   AI M  +AD+ E+A+ +W
Sbjct: 364 DSKTYNTIFEAFITARKVEEASSIFREMTKNEFCPLYANYVMAIKMYFEADDSEMAVMMW 423

Query: 420 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 479
            ++++  I P    A  L+ G  +LGR+S   +++ E + R + I   TM KLK A    
Sbjct: 424 RHMIQKAIFPKSDCAAILIDGFLDLGRVSAALKYSLEAITRGVQIPVETMIKLKNASIQT 483

Query: 480 SRSMRDIFDSLERRCKT 496
            +  +D +  LE + K+
Sbjct: 484 GK--QDAYGQLEIKMKS 498


>gi|116790303|gb|ABK25569.1| unknown [Picea sitchensis]
          Length = 541

 Score =  355 bits (910), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 194/484 (40%), Positives = 282/484 (58%), Gaps = 12/484 (2%)

Query: 19  SSSSTTTSPTSHNPHRPTRPRFPTHLDAPYISSSA--RIICEILAHASSDDIESALACTG 76
           SS   + +P   +  RP  P+ P    + Y  +     I+  IL       +E+AL    
Sbjct: 61  SSLWDSVAPPVQSSQRPRVPKEPGLDRSQYPPTMPIEMIVSNILKKPPRMGVENALNELR 120

Query: 77  IIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRG--QRLSPYAWNLMVDVLGKNGRFEQMWN 134
           +  +   V +VL+LSY +   AV FFRWAG    ++ SP AWNL+VD+LGK   F+ MW+
Sbjct: 121 LGVSIQFVEDVLKLSYGAGMEAVKFFRWAGLKLTRKHSPLAWNLLVDLLGKEKLFDAMWD 180

Query: 135 AVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194
            ++VMK +G + +  F+S+F +Y  AGK DEA M+F+VM  +G   DVVA+N  +SA+CR
Sbjct: 181 CIKVMKNEGTVPMEIFSSVFGNYVQAGKLDEAKMTFEVMEQYGCRHDVVALNCYISALCR 240

Query: 195 QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV 254
            + Q   ALEF +RVK  + PD D++A++LEGWE EGNV  A  TFGEM+    W P + 
Sbjct: 241 YK-QAKAALEFFDRVKARIAPDADTYALMLEGWEIEGNVSMAKTTFGEMIVHLGWVPNNT 299

Query: 255 LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314
            AY  FL TL+ G QV+EALKFL +MK   C P L FF N L +L +  D+ +A  LW++
Sbjct: 300 SAYNAFLSTLVNGFQVEEALKFLVMMKSLKCLPDLGFFRNTLQLLYQRKDTKNAYGLWEL 359

Query: 315 MVGIGFNLMPNLIMYNAVIGLLC--NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 372
           M   G  ++P+L  YN +IG+ C  N   VD   R   +MV +GAFPD  +YN IFE LI
Sbjct: 360 MRQSG--IVPDLPTYNTMIGVCCSVNPIQVDFADRLLVEMVCNGAFPDFRSYNTIFEALI 417

Query: 373 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 432
             ++V E    F EM KNE+ P   N   AI M  + ++P++A+ +W ++++  I P   
Sbjct: 418 IARKVEEASSIFREMTKNEFCPLYANYVRAIKMYFEVEDPDMAVIMWKHMIQKAIFPKSD 477

Query: 433 SANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLER 492
            A  L+ G  +LGR+S+  +++ E +NR + I   TM KLK A        +D +  LE+
Sbjct: 478 CAATLIDGFCDLGRVSEALKYSLETINRGVEIPVETMTKLKNA---RQAGKQDAYGQLEK 534

Query: 493 RCKT 496
           + K+
Sbjct: 535 KMKS 538


>gi|449534079|ref|XP_004173996.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like, partial [Cucumis sativus]
          Length = 391

 Score =  315 bits (806), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 158/347 (45%), Positives = 224/347 (64%), Gaps = 5/347 (1%)

Query: 26  SPTSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVH 85
           +P+ H PH+ + P F ++LD P +    +++CEI+A++ S D+E AL  TGI  T   V 
Sbjct: 47  NPSPHPPHKNSTPHFLSYLDFPNLPFQIKLMCEIIANSPSLDVEKALEDTGIHATQQDVE 106

Query: 86  EVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG 143
           EVL+LSY  P S+V FFRW+GR    + SPYAWNL++D+LGKN  F+ MW+A++ MK +G
Sbjct: 107 EVLKLSYRFPGSSVKFFRWSGRKLNDQHSPYAWNLIIDMLGKNLYFDPMWDAMKSMKSEG 166

Query: 144 VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRAL 203
           +LSL TFAS+F SY  A +  +A+M+F+VM  +G   DVVA NSLLSAICR  N T  A 
Sbjct: 167 LLSLATFASVFSSYVVANRVKDAIMAFEVMDTYGCPHDVVAFNSLLSAICRDGN-TKDAD 225

Query: 204 EFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT 263
           EFL   K+ + PD DS+AI+LEGWE EGN   A +TFGEM+E   W+P +  AY +FL  
Sbjct: 226 EFLQIAKRKIRPDLDSYAIVLEGWESEGNTVCAKQTFGEMIEEIGWDPTNTPAYNSFLCV 285

Query: 264 LIRGKQ-VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL 322
           L+R    +  AL   + +K + C+P  KFF  ALD  +K  D      LW+ ++    N 
Sbjct: 286 LLRDPNGLQRALVTFQRLKDKMCYPGFKFFKLALDECIKCGDIKSGKYLWNEIIQ-SINF 344

Query: 323 MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFE 369
            P+  M+N++I L C+ +D D   R  D+M+  GAFP++ TYN++F+
Sbjct: 345 QPDTYMFNSMIALCCHQNDTDEARRLLDEMICFGAFPNAETYNLLFQ 391


>gi|115448241|ref|NP_001047900.1| Os02g0711100 [Oryza sativa Japonica Group]
 gi|41052650|dbj|BAD07498.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|41052866|dbj|BAD07780.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113537431|dbj|BAF09814.1| Os02g0711100 [Oryza sativa Japonica Group]
 gi|125540864|gb|EAY87259.1| hypothetical protein OsI_08660 [Oryza sativa Indica Group]
 gi|215687282|dbj|BAG91847.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 489

 Score =  305 bits (780), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 178/469 (37%), Positives = 269/469 (57%), Gaps = 13/469 (2%)

Query: 35  PTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDS 94
           P+ P FPT+ DAP +    R++CEILA ++ D   +       + + D V +VL+ SY  
Sbjct: 26  PSAPAFPTYRDAPDLPPKIRLLCEILASSAPDVDAALDDADVRVTSSD-VEQVLRFSYAH 84

Query: 95  PSSAVDFFRWAGRGQ---RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFA 151
           P +AV FFRWAG      + SPY+WNL+VD+LGKN  FE MW+ V  M+  G+LSL TFA
Sbjct: 85  PRAAVAFFRWAGHRHLRHQHSPYSWNLVVDLLGKNRLFEPMWDTVSSMRTQGLLSLATFA 144

Query: 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN-QTSRALEFLNRVK 210
           S+F S   A      + +F  + M+G+++D  A+NSLLSA+CR      +RA   + R +
Sbjct: 145 SVFSSL-AANPASSPLRAFVELPMYGMDRDTPALNSLLSALCRASRLDDARAAIPVARAE 203

Query: 211 KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ- 269
               PD DS+AILLEG E  G+   A + F EM     ++P +V AY++FL TLI     
Sbjct: 204 AGTRPDADSYAILLEGCEAAGDPHVAREVFDEMRHVIGFDPANVPAYDSFLTTLISSGSS 263

Query: 270 --VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
             + +A+ +L ++  + C P  KFF  AL   +K  +   AV LW+  V +   L+P+  
Sbjct: 264 TALMDAMDYLAILHRQRCSPGEKFFRAALAAHLKARELRGAVVLWNDFV-VRRGLIPDKE 322

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
           MY+ +I L       + +  + D+M F G FPD+ TYNM+F+ L+K +++ E    F EM
Sbjct: 323 MYSTMIMLQGTLGHPEVIVEYLDEMTFDGVFPDADTYNMVFQFLLKGRKLREASAIFSEM 382

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
           +KNE+ P   NC+ A+ M LD  + +  I++W  ++ENG+ PLE S N L+  L++  RL
Sbjct: 383 VKNEFWPNEANCSLALRMFLDTRDWDSGIKLWKCMVENGLPPLEESGNMLVSKLKD-ERL 441

Query: 448 SDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKT 496
            +  ++AE+M++R I +   TM KLK+      +    I D L R+ K 
Sbjct: 442 PEACKYAEDMIDRCIKLSSSTMSKLKQCLMKVYKG--HIHDHLLRKWKA 488


>gi|326494526|dbj|BAJ94382.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 488

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 169/464 (36%), Positives = 262/464 (56%), Gaps = 11/464 (2%)

Query: 20  SSSTTTSPTSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIP 79
           S +   +P +     P  P FPT+ DAP ++   R++CEILA +S+ D+E+AL    +  
Sbjct: 10  SDAADAAPEAKRAREPAAPAFPTYKDAPDLAPKIRLLCEILA-SSASDVEAALDDADVRV 68

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGR---GQRLSPYAWNLMVDVLGKNGRFEQMWNAV 136
           T   V +VL+ SY  P  A  FFRWAG      + SPY+WNL++D+LGKN  F+ MW+ V
Sbjct: 69  TTSDVEQVLRFSYAHPRGAAAFFRWAGHRHLHHQHSPYSWNLVIDLLGKNRLFDPMWDTV 128

Query: 137 RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
             M+  G+LSL TFASIF S   A      + +F  M  +G+++D  A+NSLLSA+CR  
Sbjct: 129 GSMRAQGLLSLATFASIFSSL-AANPTSSPLKAFVEMPRYGMDRDTPALNSLLSALCRAS 187

Query: 197 N-QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
               +RA   + R +    PD DS+AILLEG E  GN   A + F EMV   +++P +V 
Sbjct: 188 RLDDARAAIPVARAEAGTRPDADSYAILLEGCEAAGNAAVAREVFDEMVHALDFDPANVP 247

Query: 256 AYETFLITLIRGKQ---VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
           AY++FL TL+       + +A+++L V++   C P  KF   AL   ++  +   AV LW
Sbjct: 248 AYDSFLTTLVSSGSSTALSDAMEYLAVLRRYRCSPGEKFLRAALAAYLEARELRSAVVLW 307

Query: 313 DIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 372
           D  V +   L+P+  MY  +I L       +   ++ D+M  +G FPD+ TYN++ + L+
Sbjct: 308 DEFV-LRRGLVPDKEMYTTMIMLQGTLGHAEVTVKYLDEMAIYGVFPDADTYNVVLKLLL 366

Query: 373 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 432
           K +++ E    F EM+KNE  P   NC+ A+ M LD  + +  I++W  +  N + PLE 
Sbjct: 367 KGRKLREASAIFKEMVKNECWPNEANCSLALGMFLDTRDWDTGIKVWKCMAANSLPPLEE 426

Query: 433 SANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
             N L+  L++   L +  ++AE+M+++ I +   T+ KLK + 
Sbjct: 427 GGNMLVSKLKD-EMLPEACKYAEDMIDQGIKLSSSTLTKLKHSL 469


>gi|226498918|ref|NP_001144625.1| uncharacterized protein LOC100277643 [Zea mays]
 gi|195644788|gb|ACG41862.1| hypothetical protein [Zea mays]
          Length = 492

 Score =  284 bits (726), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 173/463 (37%), Positives = 262/463 (56%), Gaps = 11/463 (2%)

Query: 20  SSSTTTSPTSHNPHRPTRPRFPTHLDAPYISSSARIICEILA-HASSDDIESALACTGII 78
            ++T  SP +     P  P  PT+ +AP ++   RI C+ILA  A  +++ + L    I 
Sbjct: 12  GAATVASPAAKRARDPPAPALPTNKEAPDMAPKTRIFCDILASRADDEELNAELDKADIR 71

Query: 79  PTPDLVHEVLQLSYDSPSSAVDFFRWAGR---GQRLSPYAWNLMVDVLGKNGRFEQMWNA 135
            +   V +VL+ SY  P +A  FFRWAG    G   SPY+WNL+VD+LGKN  FE MW+ 
Sbjct: 72  VSIADVEQVLRFSYAHPRAAAAFFRWAGYRYLGHEHSPYSWNLLVDILGKNRLFEPMWDT 131

Query: 136 VRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
           V+ M+   +LSL TFASIF S   A      + +F  M  +G+ +D  A+NSLLSA+CR 
Sbjct: 132 VKSMQSQQLLSLATFASIFSSL-AATPGGSPLKAFMDMPRYGMTRDTPALNSLLSALCRA 190

Query: 196 EN-QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV 254
                +RA   + R +    PD DS+AILLEG E   ++  A + F EMV+   + P++V
Sbjct: 191 NRLDDARAAIPVARAEAGTRPDADSYAILLEGSEAAADLRVAREVFDEMVQAIGFYPDNV 250

Query: 255 LAYETFLITLIRGKQ---VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
            AY++FL TL+       + EA+++L V+    C P  KFF  AL   ++      A+ L
Sbjct: 251 PAYDSFLTTLVSSDSSTALPEAMEYLNVLSRHGCSPGEKFFRAALAAHLEARQLRGAMNL 310

Query: 312 WDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECL 371
           WD  VG    L+P++ MYN +I L  +    + +  + D M+ +G FPD+ TYN++ + L
Sbjct: 311 WDDFVG-RRGLVPDMEMYNTMIKLQGSLGHAELIVGYLDDMISNGVFPDTNTYNVVLQLL 369

Query: 372 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 431
           +K K+  E    F EM+KNE  P   NC+ A+ M LD    E  I++W  ++ENG+ PL+
Sbjct: 370 LKGKKHREAAAIFSEMVKNECWPNEGNCSLALRMFLDTHYWETGIKVWCCMVENGLPPLQ 429

Query: 432 ASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKK 474
              N L+  L++  RL +  ++AE+M++R I +   T+ KLK+
Sbjct: 430 ECGNMLVAKLKD-DRLPEACKYAEDMIDRGIKLSSATLSKLKQ 471


>gi|413938524|gb|AFW73075.1| hypothetical protein ZEAMMB73_887223 [Zea mays]
          Length = 492

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 173/463 (37%), Positives = 261/463 (56%), Gaps = 11/463 (2%)

Query: 20  SSSTTTSPTSHNPHRPTRPRFPTHLDAPYISSSARIICEILA-HASSDDIESALACTGII 78
            ++T  SP +     P  P  PT+ +AP ++   RI C+ILA  A  +++ + L    I 
Sbjct: 12  GAATVASPAAKRARDPPAPALPTNKEAPDMAPKTRIFCDILASRADDEELNAELDKADIR 71

Query: 79  PTPDLVHEVLQLSYDSPSSAVDFFRWAGR---GQRLSPYAWNLMVDVLGKNGRFEQMWNA 135
            +   V +VL+ SY  P +A  FFRWAG    G   SPY+WNL+VD+LGKN  FE MW+ 
Sbjct: 72  VSIADVEQVLRFSYAHPRAAAAFFRWAGYRYLGHEHSPYSWNLLVDILGKNRLFEPMWDT 131

Query: 136 VRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
           V+ M+   +LSL TFASIF S   A      + +F  M  +G+ +D  A+NSLLSA+CR 
Sbjct: 132 VKSMQSQQLLSLATFASIFSSL-AATPGGSPLKAFMDMPRYGMTRDTPALNSLLSALCRA 190

Query: 196 EN-QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV 254
                +RA   + R +    PD DS+AILLEG E   ++  A + F EMV+   + P++V
Sbjct: 191 NRLDDARAAIPVARAEAGTRPDADSYAILLEGSEAAADLRVAREVFDEMVQAIGFYPDNV 250

Query: 255 LAYETFLITLIRGKQ---VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
            AY++FL TL+       + EA+++L V+    C P  KFF  AL   +       A+ L
Sbjct: 251 PAYDSFLTTLVSSDSSTALPEAMEYLNVLSRHGCSPGEKFFRAALAAHLDARQLRGAMNL 310

Query: 312 WDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECL 371
           WD  VG    L+P++ MYN +I L  +    + +  + D M+ +G FPD+ TYN++ + L
Sbjct: 311 WDDFVG-RRGLVPDMEMYNTMIKLQGSLGHAELIVGYLDDMISNGVFPDTNTYNVVLQLL 369

Query: 372 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 431
           +K K+  E    F EM+KNE  P   NC+ A+ M LD    E  I++W  ++ENG+ PL+
Sbjct: 370 LKGKKHREAAAIFSEMVKNECWPNEGNCSLALRMFLDTHYWETGIKVWCCMVENGLPPLQ 429

Query: 432 ASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKK 474
              N L+  L++  RL +  ++AE+M++R I +   T+ KLK+
Sbjct: 430 ECGNMLVAKLKD-DRLPEACKYAEDMIDRGIKLSSATLSKLKQ 471


>gi|357137261|ref|XP_003570219.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Brachypodium distachyon]
          Length = 488

 Score =  281 bits (718), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 170/442 (38%), Positives = 256/442 (57%), Gaps = 13/442 (2%)

Query: 40  FPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAV 99
           FPT+ DAP +    R++CEILA  ++D +E+AL    +  T   V +VL+ SY  P  A 
Sbjct: 30  FPTYKDAPDLPPKIRLLCEILASPATD-VEAALDDAAVRVTTSDVEQVLRFSYAHPRGAA 88

Query: 100 DFFRWAG----RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFD 155
            FFRWAG    R Q  SPY+WNL++D+LGKN  F+ MW+ V  M+  G+LSL +FAS+F 
Sbjct: 89  AFFRWAGHRHLRHQH-SPYSWNLVIDLLGKNRLFDPMWDTVSSMRSQGLLSLASFASVFS 147

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN-QTSRALEFLNRVKKIVD 214
           S   A      + +F  M  +G+++D  A+NSLLSA+CR      +RA   + R +    
Sbjct: 148 SL-AADPVSSPLKAFVDMPKYGMDRDTPALNSLLSALCRASRLDDARAAIPVARAEASTR 206

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK---QVD 271
           PD DS+AILLEG E  G+   A + F EMV    ++P +V AY++FL TL+       + 
Sbjct: 207 PDADSYAILLEGCEAAGDPAVAREVFDEMVRHVGFDPANVPAYDSFLTTLVSSSSTTALT 266

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA 331
           EA+ +L V++   C P  KF   AL   +K  D   A  LWD  V +   L+P+  MY++
Sbjct: 267 EAMDYLAVLRRYRCSPGEKFLRAALAAHLKAQDLRGAQVLWDDFV-VRLGLIPDKEMYSS 325

Query: 332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
           +I L       + +  + D M F+G FPD+ TYNM+ + L+K +++ E    F EM+KNE
Sbjct: 326 MIMLQGTLGHAEVIVEYVDDMAFYGVFPDADTYNMVLKLLLKGRKLREASAIFREMVKNE 385

Query: 392 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 451
             P   NC+ A+ M LD  + E  I++WN ++ NG+ PLE S N L+  L++   L +  
Sbjct: 386 CWPNEANCSLALRMFLDTRDWETGIKVWNCMVANGLPPLEESGNMLVSKLKD-EMLPEAC 444

Query: 452 RFAEEMLNRRILIYEVTMHKLK 473
           ++AE+M+++ I +   T+ KL+
Sbjct: 445 KYAEDMIDQGIKVSSSTLGKLR 466


>gi|413951473|gb|AFW84122.1| hypothetical protein ZEAMMB73_475584 [Zea mays]
          Length = 354

 Score =  272 bits (696), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 148/376 (39%), Positives = 202/376 (53%), Gaps = 59/376 (15%)

Query: 55  IICEILAHASSDDIESALACTGIIPTPDLVHEVLQL--SYDSPSSAVDFFRWAGRGQRLS 112
           IIC +L      ++E+AL+  GI PT ++   VL+    Y  P S+V FFRWAG+    +
Sbjct: 26  IICRVLV----GEVEAALSACGIGPTAEVEELVLKSRECYKRPKSSVRFFRWAGQSVSHT 81

Query: 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG---VLSLPTFASIFDSYCGAGKYDEAVMS 169
            YAWNL+VD+LGK   FE MW+A+R MK++G   ++S+ TFAS+F SYC AG   +A+ +
Sbjct: 82  AYAWNLLVDILGKAAMFEPMWDAIRSMKQEGGGGLVSVATFASVFASYCAAGNIKDAIAA 141

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK 229
            DVM  +G++ D VA+NSLLSAICR E +   A +   R K  + PDGD+FAILLE WEK
Sbjct: 142 LDVMDRYGLKHDAVALNSLLSAICRVEGRMQDAQDVFERTKATIPPDGDTFAILLEAWEK 201

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
           EGN   A   FGEMV R  W+  +                                    
Sbjct: 202 EGNAVRAKSVFGEMVVRIGWDAAN------------------------------------ 225

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
                         D  +AV +W +MV     L+PN  MY+A+IGL CN   +D+     
Sbjct: 226 -------------GDYLNAVAIWHMMVSEA-GLVPNFSMYSAMIGLHCNAGSIDDALGLL 271

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 409
           D+M  +GAF +S+TY+ I E  I N++  E E F  EM KNE  PT  NC  AI++    
Sbjct: 272 DEMPLNGAFANSVTYHTILEGFINNRKAREAESFLTEMSKNEQLPTASNCDVAISLFFKE 331

Query: 410 DEPEIAIEIWNYILEN 425
             P  AI++W  I E+
Sbjct: 332 FNPSAAIDVWRCIEEH 347


>gi|125583433|gb|EAZ24364.1| hypothetical protein OsJ_08117 [Oryza sativa Japonica Group]
          Length = 438

 Score =  254 bits (649), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 139/354 (39%), Positives = 208/354 (58%), Gaps = 9/354 (2%)

Query: 84  VHEVLQLSYDSPSSAVDFFRWAGRGQ---RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMK 140
           V +VL+ SY  P +AV FFRWAG      + SPY+WNL+VD+LGKN  FE MW+ V  M+
Sbjct: 74  VEQVLRFSYAHPRAAVAFFRWAGHRHLRHQHSPYSWNLVVDLLGKNRLFEPMWDTVSSMR 133

Query: 141 EDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN-QT 199
             G+LSL TFAS+F S   A      + +F  + M+G+++D  A+NSLLSA+CR      
Sbjct: 134 TQGLLSLATFASVFSSLA-ANPASSPLRAFVELPMYGMDRDTPALNSLLSALCRASRLDD 192

Query: 200 SRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYET 259
           +RA   + R +    PD DS+AILLEG E  G+   A + F EM     ++P +V AY++
Sbjct: 193 ARAAIPVARAEAGTRPDADSYAILLEGCEAAGDPHVAREVFDEMRHVIGFDPANVPAYDS 252

Query: 260 FLITLIRGKQ---VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
           FL TLI       + +A+ +L ++  + C P  KFF  AL   +K  +   AV LW+  V
Sbjct: 253 FLTTLISSGSSTALMDAMDYLAILHRQRCSPGEKFFRAALAAHLKARELRGAVVLWNDFV 312

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
            +   L+P+  MY+ +I L       + +  + D+M F G FPD+ TYNM+F+ L+K ++
Sbjct: 313 -VRRGLIPDKEMYSTMIMLQGTLGHPEVIVEYLDEMTFDGVFPDADTYNMVFQFLLKGRK 371

Query: 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 430
           + E    F EM+KNE+ P   NC+ A+ M LD  + +  I++W  ++ENG+ P+
Sbjct: 372 LREASAIFSEMVKNEFWPNEANCSLALRMFLDTRDWDSGIKLWKCMVENGLPPI 425


>gi|413917805|gb|AFW57737.1| hypothetical protein ZEAMMB73_139699 [Zea mays]
          Length = 276

 Score =  239 bits (609), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 116/240 (48%), Positives = 157/240 (65%), Gaps = 5/240 (2%)

Query: 58  EILAHASSDDIESALACTGIIPTPDLVHEVLQL--SYDSPSSAVDFFRWAGRGQRLSPYA 115
           EI+    + ++E+AL+  GI PT ++   VL+    Y  P SAV FFRWAG+    + YA
Sbjct: 27  EIICRVPAGEVEAALSACGIGPTAEVEELVLKSRECYKRPKSAVCFFRWAGQSVSHTAYA 86

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDG---VLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           WNL VD+LGK   FE MW+A+R MK++G   ++S+ TFAS+F SYC AG   +A+ + DV
Sbjct: 87  WNLHVDILGKAAMFEPMWDAIRSMKQEGGGGLVSVATFASVFASYCAAGNIKDAIAALDV 146

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M  +G++ D VA+NSLLSAICR E +   A +   R K  +  DGD+FAILLE WEKEGN
Sbjct: 147 MDRYGLKHDSVALNSLLSAICRVEGRAQDAQDVFERTKATIPSDGDTFAILLEAWEKEGN 206

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
              A   FGEMV R  W+  +V  Y++FL TL+RG  +DEA KFL+VM+ + C P + FF
Sbjct: 207 AVRAKSVFGEMVVRIGWDAANVSVYDSFLSTLVRGGLLDEAFKFLQVMRSKGCLPGINFF 266


>gi|42565430|gb|AAS20986.1| pentatricopeptide repeat protein-like protein [Hyacinthus
           orientalis]
          Length = 236

 Score =  236 bits (602), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 109/188 (57%), Positives = 136/188 (72%), Gaps = 1/188 (0%)

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
           AILL GWEK GNV+ A  TFGEMV R  WNP ++ AY+ FL TL+R  Q  EA+ FLRVM
Sbjct: 1   AILLAGWEKAGNVQRAKTTFGEMVVRVGWNPSNMSAYDAFLTTLVRAGQPAEAINFLRVM 60

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
           K +NC P +KFFS ALDILVK ND+ HAV LWD+MV     L+P+ +MYNA+I L CNN 
Sbjct: 61  KSKNCHPGIKFFSTALDILVKNNDARHAVALWDLMV-TDSGLVPDTVMYNAIIALSCNNL 119

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
           D D+ +RF D M FHGAFPD +TYN IFECL++ +R ++  KFF EM +NE +P+P NC 
Sbjct: 120 DFDSAYRFLDAMPFHGAFPDPITYNTIFECLMRGRRANDAGKFFAEMRRNEQRPSPSNCL 179

Query: 401 TAITMLLD 408
            AI + L+
Sbjct: 180 AAIKLFLE 187


>gi|238011542|gb|ACR36806.1| unknown [Zea mays]
          Length = 369

 Score =  212 bits (540), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 135/360 (37%), Positives = 200/360 (55%), Gaps = 10/360 (2%)

Query: 20  SSSTTTSPTSHNPHRPTRPRFPTHLDAPYISSSARIICEILA-HASSDDIESALACTGII 78
            ++T  SP +     P  P  PT+ +AP ++   RI C+ILA  A  +++ + L    I 
Sbjct: 12  GAATVASPAAKRARDPPAPALPTNKEAPDMAPKTRIFCDILASRADDEELNAELDKADIR 71

Query: 79  PTPDLVHEVLQLSYDSPSSAVDFFRWAGR---GQRLSPYAWNLMVDVLGKNGRFEQMWNA 135
            +   V +VL+ SY  P +A  FFRWAG    G   SPY+WNL+VD+LGKN  FE MW+ 
Sbjct: 72  VSIADVEQVLRFSYAHPRAAAAFFRWAGYRYLGHEHSPYSWNLLVDILGKNRLFEPMWDT 131

Query: 136 VRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
           V+ M+   +LSL TFASIF S   A      + +F  M  +G+ +D  A+NSLLSA+CR 
Sbjct: 132 VKSMQSQQLLSLATFASIFSS-LAATPGGSPLKAFMDMPRYGMTRDTPALNSLLSALCRA 190

Query: 196 EN-QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV 254
                +RA   + R +    PD DS+AILLEG E   ++  A + F EMV+   + P++V
Sbjct: 191 NRLDDARAAIPVARAEAGTRPDADSYAILLEGSEAAADLRVAREVFDEMVQAIGFYPDNV 250

Query: 255 LAYETFLITLIRGKQ---VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
            AY++FL TL+       + EA+++L V+    C P  KFF  AL   +       A+ L
Sbjct: 251 PAYDSFLTTLVSSDSSTALPEAMEYLNVLSRHGCSPGEKFFRAALAAHLDARQLRGAMNL 310

Query: 312 WDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECL 371
           WD  VG    L+P++ MYN +I L  +    + +  + D M+ +G FPD+ TYN++ + L
Sbjct: 311 WDDFVG-RRGLVPDMEMYNTMIKLQGSLGHAELIVGYLDDMISNGVFPDTNTYNVVLQLL 369


>gi|414586334|tpg|DAA36905.1| TPA: hypothetical protein ZEAMMB73_204717 [Zea mays]
          Length = 239

 Score =  202 bits (513), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 99/204 (48%), Positives = 133/204 (65%), Gaps = 5/204 (2%)

Query: 58  EILAHASSDDIESALACTGIIPTPDLVHEVLQL--SYDSPSSAVDFFRWAGRGQRLSPYA 115
           EI+    + ++E+AL+  GI PT ++   VL+    Y  P SAV FFRWAG+    + YA
Sbjct: 27  EIICRVPAGEVEAALSACGIGPTAEVEELVLKSRECYKRPKSAVRFFRWAGQSVSHTAYA 86

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDG---VLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           WNL+VD+LGK   FE MW+A+R MK++G   ++S+ TFAS+F SYC AG   +A+ + DV
Sbjct: 87  WNLLVDILGKAAMFEPMWDAIRSMKQEGGGGLVSVATFASVFASYCAAGNIKDAIAALDV 146

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M  +G++ D VA+NSLLSAICR E +   A +   R K  + PDGD+FAILLE WEKEGN
Sbjct: 147 MDRYGLKHDAVALNSLLSAICRVEGRAQDAQDVFERTKATIPPDGDTFAILLEAWEKEGN 206

Query: 233 VEEANKTFGEMVERFEWNPEHVLA 256
              A   FGEMV R  W+  +V A
Sbjct: 207 AVRAKSVFGEMVVRIGWDAANVSA 230


>gi|356515931|ref|XP_003526650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Glycine max]
          Length = 461

 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 132/439 (30%), Positives = 221/439 (50%), Gaps = 16/439 (3%)

Query: 49  ISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA--G 106
           +  ++  +C+++    +  +++AL  TG+  +PDLV  VL+   ++   A  FF WA   
Sbjct: 12  VGEASERVCKVMMTCPTLGLDTALNQTGVRVSPDLVENVLKRFENAGMPAFRFFEWAEKQ 71

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           RG   S  A++LM++ L K  +++ +W+ V  M++ G+L++ TF  +   Y  A K DEA
Sbjct: 72  RGYSHSIRAYHLMIESLAKIRQYQIVWDLVSAMRKKGMLNVETFCIMMRKYARANKVDEA 131

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
           V +F+VM  + V  ++ A N LLSA+C+  N   +A E  + +K    PD  S++ILLEG
Sbjct: 132 VYTFNVMDKYDVVPNLAAFNGLLSALCKS-NNVRKAQEIFDAMKGQFVPDEKSYSILLEG 190

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
           W K  N+  A + F EMVE    +P+ V+ Y   +  L +  +VDEA++ ++ M   NC 
Sbjct: 191 WGKAPNLPRAREVFREMVEA-GCDPD-VVTYGIMVDVLCKAGRVDEAVEVVKEMDVGNCR 248

Query: 287 PTLKFFSNALDILVKLNDSTH----AVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
           PT   +S    +LV      H    A+  +  M   G     +++ YNA+IG  C  +  
Sbjct: 249 PTSFIYS----VLVHTYGVEHRIEDAIDTFLEMAKKGIK--ADVVAYNALIGAFCKVNKF 302

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
            NV R   +M  +G  P+S T N+I   +I   +     + F  MIK   +P        
Sbjct: 303 KNVHRVLKEMESNGVAPNSRTCNVIISSMIGQGQTDRAFRVFCRMIK-LCEPDADTYTMM 361

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
           I M  + +E E+A++IW Y+     +P   + + L+ GL      +      EEM+ + I
Sbjct: 362 IKMFCEKNELEMALKIWKYMKSKQFVPSMHTFSALIKGLCEKDNAAKACVVMEEMIEKGI 421

Query: 463 LIYEVTMHKLKKAFYNESR 481
               +T  +L++    E R
Sbjct: 422 RPSRITFGRLRQLLIKEGR 440


>gi|242038757|ref|XP_002466773.1| hypothetical protein SORBIDRAFT_01g013990 [Sorghum bicolor]
 gi|241920627|gb|EER93771.1| hypothetical protein SORBIDRAFT_01g013990 [Sorghum bicolor]
          Length = 487

 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 134/462 (29%), Positives = 239/462 (51%), Gaps = 22/462 (4%)

Query: 42  THLDAPYISSSARIICE-ILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVD 100
           T LDA   S  A+ +C+ I++   +  +E  L  +G+  TP++   VL+   ++   A  
Sbjct: 31  TLLDA---SDLAKRLCKLIISCRKASAVEHELDHSGVRVTPEVAERVLERLDNAGMLAYR 87

Query: 101 FFRWAGRGQR----LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDS 156
           FF WA R +R     +  +++ +V  L K  +++ MW+ V VM+++GV ++ TF+ I   
Sbjct: 88  FFEWARRQKRGGCAHTVRSYHTVVASLAKIRQYQLMWDVVAVMRKEGVANVETFSIIMRK 147

Query: 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPD 216
           Y  A K+DEAV +F++M  +GV  ++ A NSLL A+C+ +N   +A E  +++     PD
Sbjct: 148 YARAQKFDEAVYTFNIMERYGVAHNLAAFNSLLGALCKSKN-VRKAQEIFDKMNNRFSPD 206

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
             +++ILLEGW +  N+ +  + + +M+      P+ ++ Y   +  L +  +V+EA+  
Sbjct: 207 AKTYSILLEGWGRAPNLPKMREVYSDMLAA-GCQPD-IVTYGIMVDALCKTGRVEEAVCV 264

Query: 277 LRVMKGENCFPTLKFFS---NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
           ++ M    C PT   +S   +   + +++ D   AV  +  M   G  ++P++++YNA++
Sbjct: 265 VQDMSSRGCQPTTFIYSVLVHTYGVDMRIED---AVATFLDMEKDG--IVPDVVVYNALV 319

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
              C     DN FR  D M  HG  P+S T+N+I   LI   +  E  + F  MIK   +
Sbjct: 320 TAFCKVKKFDNAFRVMDDMEGHGISPNSRTWNIILNTLISLGKDDEAYRVFRNMIK-RCK 378

Query: 394 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 453
           P        I M  + D+ E+A+++W Y+     LP   + + L+ GL + G +S     
Sbjct: 379 PDSDTYTMMIKMFCENDKIEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACVL 438

Query: 454 AEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCK 495
            E+M+ + I     T  KL++    E R  +D+ D L  + K
Sbjct: 439 LEDMIEKGIRPPGSTFGKLRQLLLKEGR--KDVLDFLVEKMK 478


>gi|313851107|ref|NP_001186539.1| pentatricopeptide repeat protein [Zea mays]
 gi|312064725|gb|ADQ27447.1| pentatricopeptide repeat protein [Zea mays]
 gi|414872960|tpg|DAA51517.1| TPA: hypothetical protein ZEAMMB73_325693 [Zea mays]
          Length = 489

 Score =  191 bits (484), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 129/451 (28%), Positives = 231/451 (51%), Gaps = 18/451 (3%)

Query: 52  SARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQR- 110
           S R+   I++   +  +E  L  +G+  TP++   VL+   ++   A  FF WA + +R 
Sbjct: 41  SKRLCKLIISCRKASALEHELDHSGVRVTPEIAESVLKHLDNAGMLAYRFFEWARKQKRG 100

Query: 111 ---LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAV 167
               +  +++ +V  L K  +++ MW+ V +M+++GV ++ TF  I   Y  A K DEAV
Sbjct: 101 VCAHTVRSYHTVVTSLAKIRQYQLMWDVVAIMRKEGVANVETFGIIMRKYARAQKLDEAV 160

Query: 168 MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW 227
            +F+VM  +GV  ++ A NSLLSA+C+ +N   +A E  +++     PD  +++ILLEGW
Sbjct: 161 YTFNVMEKYGVAHNLAAFNSLLSALCKSKN-VRKAQEIFDKMNNRFSPDAKTYSILLEGW 219

Query: 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
            +  ++ +  + + +M+      P+ ++ Y   +  L +  +V+EA+  ++ M    C P
Sbjct: 220 GRAPSLPKMREVYSDMLAA-GCQPD-IVTYGIMVDALCKTGRVEEAVCVVQDMSSRGCQP 277

Query: 288 TLKFFS---NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
           T   +S   +   + +++ D   AV  +  M   G  +MP++++YNA+I   C     +N
Sbjct: 278 TTFIYSILVHTYGVDMRIED---AVAAFLDMEKDG--IMPDVVVYNALITAFCKVKKFEN 332

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
            FR  D M  HG  P+S T+N+I   LI   +  E  + F  MIK   +P        I 
Sbjct: 333 AFRVMDDMQGHGISPNSRTWNIILNTLISLGKDDEAYRVFRSMIK-RCKPDSDTYTMMIK 391

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 464
           M  + D+ E+A+++W Y+     LP   + + L+ GL + G +S      E+M+ + I  
Sbjct: 392 MFCENDKIEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACVLLEDMIEKGIRP 451

Query: 465 YEVTMHKLKKAFYNESRSMRDIFDSLERRCK 495
              T  KL++    E R  +D+ D L  + K
Sbjct: 452 PGSTFGKLRQLLLKEGR--KDVLDFLVEKMK 480


>gi|357114607|ref|XP_003559090.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Brachypodium distachyon]
          Length = 486

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 127/446 (28%), Positives = 232/446 (52%), Gaps = 19/446 (4%)

Query: 53  ARIICE-ILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQR- 110
           A+ +C+ I++   +  +E  L  + +  TPD+   VL+   ++   A  FF WA + +R 
Sbjct: 38  AKRLCKLIISCQKASGLELELDHSDLRVTPDVAERVLERLDNAGMLAYRFFEWARKQKRG 97

Query: 111 ---LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAV 167
               +  +++ +V  L K  +++ MW+ V +M+ +GV+++ TF  I   Y  A K+DEAV
Sbjct: 98  GCNHTIRSYHTVVASLAKIRQYQLMWDVVAIMRREGVVNVETFGIIMRKYARAQKFDEAV 157

Query: 168 MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW 227
            +F++M  +GV  ++ A NSLL A+C+ +N   +A E  +++    +PD  +++ILLEGW
Sbjct: 158 YTFNIMEKYGVVPNLAAFNSLLGALCKSKN-VRKAQEIFDKMNGRFNPDAKTYSILLEGW 216

Query: 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
            K  N+ +  + + EM++     P+ ++ Y   + +L +  +V+EA+  ++ M    C P
Sbjct: 217 GKAPNLPKMREVYSEMLDA-GCQPD-IVTYGIMVDSLCKTGRVEEAVLVVQDMSSRGCQP 274

Query: 288 TLKFFS---NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
           T   +S   +   + +++ D   AV  +  M   G  ++P++++YNA++   C     +N
Sbjct: 275 TTFIYSVLVHTYGVEMRIED---AVATFLDMEKDG--IVPDVVVYNALVTAFCKVKKFEN 329

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
            FR  D M  HG  P+S T+N+I   LI   +  E  + F  MIK   QP        I 
Sbjct: 330 AFRVMDDMEGHGIAPNSRTWNIILNKLISLGKDDEAYRVFRRMIK-RCQPDSDTYTMMIK 388

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 464
           M  + D  E+A+++W Y+     LP   + + L+ GL + G +S      E+M+ + I  
Sbjct: 389 MFCENDNVEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACVLLEDMIEKGIRP 448

Query: 465 YEVTMHKLKKAFYNESRSMRDIFDSL 490
              T  KL++    E R  +D+ + L
Sbjct: 449 PGSTFGKLRQLLLKEGR--KDVLEFL 472


>gi|115455503|ref|NP_001051352.1| Os03g0761300 [Oryza sativa Japonica Group]
 gi|14488357|gb|AAK63924.1|AC084282_5 unknown protein [Oryza sativa Japonica Group]
 gi|108711214|gb|ABF99009.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549823|dbj|BAF13266.1| Os03g0761300 [Oryza sativa Japonica Group]
 gi|125545804|gb|EAY91943.1| hypothetical protein OsI_13630 [Oryza sativa Indica Group]
 gi|125588003|gb|EAZ28667.1| hypothetical protein OsJ_12678 [Oryza sativa Japonica Group]
          Length = 484

 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 128/446 (28%), Positives = 228/446 (51%), Gaps = 18/446 (4%)

Query: 52  SARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQR- 110
           + R+   I++   +  +E  L  +G+  TPD+   VL+   ++   A  FF WA R +R 
Sbjct: 36  AKRLFKLIISCRKASAVEHELDHSGVRVTPDVAERVLERLDNAGMLAYRFFEWARRQKRG 95

Query: 111 ---LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAV 167
               +  +++ +V  L K  +++ MW+ V VM+ +G +++ TF  I   Y  A K DEAV
Sbjct: 96  GCAHTVRSYHTVVASLAKIRQYQLMWDVVAVMRREGAVNVETFGIIMRKYARAQKVDEAV 155

Query: 168 MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW 227
            +F+VM  +GV  ++ A NSLL A+C+ +N   +A E  +++     PD  +++ILLEGW
Sbjct: 156 YTFNVMEKYGVVPNLAAFNSLLGALCKSKN-VRKAQEIFDKMNSRFSPDAKTYSILLEGW 214

Query: 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
            +  N+ +  + + EM++     P+ ++ Y   + +L +  +V+EA++ ++ M    C P
Sbjct: 215 GRAPNLPKMREVYSEMLDA-GCEPD-IVTYGIMVDSLCKTGRVEEAVRVVQDMTSRGCQP 272

Query: 288 TLKFFS---NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
           T   +S   +   + +++ D   AV  +  M   G  ++P++++YNA++   C     +N
Sbjct: 273 TTYIYSVLVHTYGVEMRIED---AVATFLDMEKDG--IVPDIVVYNALVSAFCKAKKFEN 327

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
            FR  + M  HG   +S T+N+I   LI   R  E  K F  MIK   QP        I 
Sbjct: 328 AFRVLNDMEGHGITTNSRTWNIILNHLISLGRDDEAYKVFRRMIKC-CQPDCDTYTMMIK 386

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 464
           M  + D+ E+A+++W Y+     LP   + + L+ GL +   +S      E+M+ + I  
Sbjct: 387 MFCENDKVEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKREVSQACVLLEDMIEKGIRP 446

Query: 465 YEVTMHKLKKAFYNESRSMRDIFDSL 490
              T  KL++    E R  +D+ D L
Sbjct: 447 PGSTFGKLRQLLLKEGR--KDVLDFL 470


>gi|225424178|ref|XP_002280443.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial [Vitis vinifera]
          Length = 531

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 127/439 (28%), Positives = 215/439 (48%), Gaps = 11/439 (2%)

Query: 48  YISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA-- 105
           +I+     +C++L   S+  IES L    +  +P LV EVL+   +S   A+ FFRWA  
Sbjct: 78  HIAQDTGKLCKLLCTHSNSSIESLLNGASVDVSPTLVLEVLKKLSNSGVIALSFFRWAEK 137

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDE 165
            +G + S   +N +++ LGK  +F+ +WN V  M+  G+L+  TFA I   Y  A K  E
Sbjct: 138 QKGFKYSTENYNALIEALGKIKQFKMIWNLVNDMRSKGLLTQETFALISRRYARARKVKE 197

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILL 224
           AV +F+ M   G++  +   N LL A+C+  +   RA E  +++K +   PD  S+ ILL
Sbjct: 198 AVETFEKMEKFGLQPVLSDFNRLLDALCKSRH-VERAQEVFDKMKDRKFRPDIKSYTILL 256

Query: 225 EGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           EGW +E N+   ++ + EM  E FE  P+ V  Y   +    + ++ D A++    M+  
Sbjct: 257 EGWGQEQNLLRLDEVYREMKDEGFE--PDAV-TYGILINAHCKARRYDAAVELFHKMEAN 313

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
            C PT   +   ++ L      T A+Q ++     GF   P    YNAV+G  C +  +D
Sbjct: 314 KCMPTPHIYCTLINGLGSERRLTEALQFFERSKASGFT--PEAPTYNAVVGSYCQSMRMD 371

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE-WQPTPLNCATA 402
           + +R  D+M   G  P + TY++I   LIK +R  E  + F  M      +P+       
Sbjct: 372 DAYRIVDEMRKCGVGPQTRTYDIILHHLIKARRTKEAYRVFQGMSSEPGCEPSVSTYEIV 431

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
           + M  + +  ++A+ +W+ +   G+LP     + L+  L    +L +  ++  EML+  I
Sbjct: 432 VRMFCNEERVDMALRVWDEMKAKGVLPGMHMFSTLINSLCYENKLDEACKYFHEMLDMGI 491

Query: 463 LIYEVTMHKLKKAFYNESR 481
                    LK+   +E +
Sbjct: 492 RPPAAMFSNLKQTLLDEGK 510


>gi|326520119|dbj|BAK03984.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 485

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 129/447 (28%), Positives = 227/447 (50%), Gaps = 20/447 (4%)

Query: 53  ARIICE-ILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL 111
           A+ +C+ I++   +  +E  L  + +  TPD+   VL+   ++   A  FF WA + +R 
Sbjct: 36  AKRLCKLIISCRQASGLEIELDHSDLRVTPDVAERVLERLDNAGMLAYRFFEWARKQRRG 95

Query: 112 SPYA-----WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
              A     ++ +V  L K  +++ MW+ V +M+  GV+++ TF  I   Y  A K DEA
Sbjct: 96  GGCAHTVRSFHTVVASLAKIRQYQLMWDVVAIMRRQGVVNVETFGIIMRKYARAQKVDEA 155

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
           V +F+VM  +GV  ++ A NSLL A+C+ +N   +A E   ++     PD  +++ILLEG
Sbjct: 156 VYTFNVMEKYGVVPNLAAFNSLLCALCKSKN-VRKAQEIFEQMNGRFSPDAKTYSILLEG 214

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
           W +  N+ +  K + +M++     P+ ++ Y   + +L +  +V+EA+  ++ M    C 
Sbjct: 215 WGRAPNLPKMRKVYSDMLDA-GCQPD-IVTYGIMVDSLCKTGRVEEAVFVVQDMTSRGCQ 272

Query: 287 PTLKFFS---NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
           PT   +S   +   + +++ D   AV  +  M   G  ++P++++YNA++   C     D
Sbjct: 273 PTTFIYSVLVHTYGVEMRIED---AVATFLDMQKDG--IVPDVVVYNALVTAFCKVKKFD 327

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
           N FR  D M  HG  P+S T+N+I   LI   +  E  + F  MIK   QP        I
Sbjct: 328 NAFRVMDDMEGHGITPNSRTWNIILNKLISLGKDDEAYRVFRRMIK-RCQPDSDTYTMMI 386

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
            M  + D  E+A+++W Y+     LP   + + L+ GL + G +S      E+M+ + I 
Sbjct: 387 KMFCENDRLEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACVLLEDMIEKGIR 446

Query: 464 IYEVTMHKLKKAFYNESRSMRDIFDSL 490
               T  KL++    E R  +D+ + L
Sbjct: 447 PPGSTFGKLRQLLLKEGR--KDVLEFL 471


>gi|224084978|ref|XP_002307458.1| predicted protein [Populus trichocarpa]
 gi|222856907|gb|EEE94454.1| predicted protein [Populus trichocarpa]
          Length = 440

 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 127/436 (29%), Positives = 219/436 (50%), Gaps = 10/436 (2%)

Query: 60  LAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL--SPYAWN 117
           +  +S   +++AL  +G+  +  +V +VL+   ++   A  FF WA + +    S  A++
Sbjct: 1   MMSSSVVTLDTALDQSGVRVSEQIVEDVLKKFENAGMVAYRFFEWAEKQRHYNHSVKAFH 60

Query: 118 LMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
            ++D L K  +++ MW+ V+VMK   ++++ TF  I   Y  A K +EAV +F++M  + 
Sbjct: 61  TVIDSLAKIRQYQLMWDVVKVMKSKRMVNVETFCIIMRKYARAQKVEEAVYTFNIMDKYD 120

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
           V  ++ A N LLSA+C+ +N   +A E  + +K    PD  +++ILLEGW K+ N+ +A 
Sbjct: 121 VPPNLAAFNGLLSALCKSKN-VRKAQEIFDSIKDRFVPDSKTYSILLEGWGKDPNLPKAR 179

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297
           + F EMV      P+ ++ Y   +  L +  +VDEAL  +  M    C PT   +S  + 
Sbjct: 180 EIFREMVSN-GCRPD-IVTYGIMVDVLCKAGRVDEALGIVNEMDSTVCKPTPFIYSVLVH 237

Query: 298 ILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGA 357
                N    AV  +  M   G    P++ +YNA+IG  C  + + NV+R  ++M   G 
Sbjct: 238 TYGIENRIEDAVSTFLEMENNGIE--PDVAVYNALIGAFCKANRLKNVYRVLNEMDCKGV 295

Query: 358 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 417
            P+S T+N+I   LI      E  + F  MIK   +P        I M  + DE + A++
Sbjct: 296 TPNSRTFNIILSSLIGRGETDEAYRVFLRMIK-VCEPDADTYTMMIKMFCERDELKKALK 354

Query: 418 IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFY 477
           +W Y+     +P   +   L+ GL   G ++      EEM+ + I    VT  +L++   
Sbjct: 355 VWKYMKLKRFMPSMHTFQVLINGLCEKGDVTQACVLLEEMIEKGIRPSGVTFGRLRQLLI 414

Query: 478 NESRSMRDIFDSLERR 493
            E R   D+   L+++
Sbjct: 415 KEGRE--DVLKFLQKK 428


>gi|359492357|ref|XP_002284592.2| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Vitis vinifera]
          Length = 476

 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 129/443 (29%), Positives = 224/443 (50%), Gaps = 16/443 (3%)

Query: 56  ICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL--SP 113
           IC+I+      +++++L+ +GI  +P +V  VL+   ++   A  FF WAG+ +    S 
Sbjct: 18  ICKIMISCPKLELDTSLSESGIRVSPIVVENVLKRFENAGMLAYQFFEWAGKQRNYTHSI 77

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            A++ M++ L K  +++ MW+ V  M+   +L++ TF  I   Y  + K  EAV +F++M
Sbjct: 78  RAYHTMIESLAKIRQYQIMWDLVNKMRSLKILNVETFCIIMRKYARSQKVKEAVYTFNIM 137

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
             + V  ++ A NSLLSA+C+ +N   +A E  N +K    PD  +++ILLEGW K  N+
Sbjct: 138 EKYDVPPNLAAFNSLLSALCKSKN-VVKAQEIFNGMKDQFIPDSKTYSILLEGWGKAPNL 196

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            +A + F EMV+    +P+ ++ Y   +  L +  +VDEA+  ++ M    C PT   +S
Sbjct: 197 PKAREIFREMVD-MGCDPD-IVTYGIMVDILCKAGRVDEAVGIVKEMDSSVCKPTSFIYS 254

Query: 294 ---NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
              +   I  ++ D+ +     D+       +  ++ +YNA+IG  C  + + N +R  +
Sbjct: 255 VLVHTYGIENRIEDAVYT--FLDMERN---EIEADVAVYNALIGAFCKVNKLKNAYRVLN 309

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
           +M   G  P+S T N+I   LI      E  + F  MIK    P        I M  + D
Sbjct: 310 EMDCKGIRPNSRTCNIILNSLISCGDTDEAFRVFRRMIK-VCDPDADTYTMMIKMFCEND 368

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 470
           + E+A+++W Y+     +P   + + L+ GL   G  S      EEM+ + I    VT  
Sbjct: 369 KLEMALKVWKYMRLKQFVPSMHTFSVLINGLCKKGNASKACILLEEMIEKGIRPSSVTFG 428

Query: 471 KLKKAFYNESRSMRDIFDSLERR 493
           KLK+    E R   D+ + L+ +
Sbjct: 429 KLKQLLIKEGRE--DVLEFLQEK 449


>gi|449503427|ref|XP_004161997.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g71060, mitochondrial-like [Cucumis sativus]
          Length = 542

 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 133/473 (28%), Positives = 231/473 (48%), Gaps = 12/473 (2%)

Query: 16  IIPSSSSTTTSPTSH---NPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESAL 72
           +IP+ + T+   T H   +  +  +    + +++  I+  A   C++++   +  IES L
Sbjct: 54  LIPNRNYTSHRSTHHRIEHSKQDLKASQKSIVESDEIAQDAEKFCKLISKNPNSCIESLL 113

Query: 73  ACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA--GRGQRLSPYAWNLMVDVLGKNGRFE 130
               +  +P L+ EVL+   ++   A+ FFRWA   +G + +  ++NL+++ LGK  +F 
Sbjct: 114 DGAPMELSPALIVEVLKKLSNAGFLALSFFRWAEKQKGFKHTTESYNLLIEALGKIKQFN 173

Query: 131 QMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS 190
            +WN V  MK  G+LS  TFA I   Y  A K  EAV SF+ M   G +  V   N LL 
Sbjct: 174 VIWNLVSDMKRKGILSRETFALITRRYARARKVKEAVESFEKMEKFGFQMGVSDFNRLLD 233

Query: 191 AICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW 249
            +C+  N   +A E  +++K     PD  S+ ILLEGW ++ N+ + N+ + EM  R E 
Sbjct: 234 TLCKSRN-VKKAQEVFDKMKHGRFKPDIKSYTILLEGWGQDQNLLKLNEVYREM--RDEG 290

Query: 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV 309
               V+ +   +    + ++ DEA++    M+ +N  P+   F   ++ L        A+
Sbjct: 291 FEPDVVTFGILINAHCKARKYDEAIRLFHEMEAKNIKPSPHVFCTLINGLGSEKRLKEAL 350

Query: 310 QLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFE 369
           + ++ +   GF   P    YNAV+G  C +  +   +R  D+M   G  P+S TY++I  
Sbjct: 351 EFFEQLKLSGF--APEAPTYNAVVGAYCWSMKMAYAYRMVDEMRKSGVGPNSRTYDIILH 408

Query: 370 CLIKNKRVHEVEKFFHEMIKNE-WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 428
            LIK ++  E    F  M +    +PT       I M  + +  ++AI+IW+ +   G+L
Sbjct: 409 HLIKGRKSKEAYSVFQRMSREPGCEPTLSTYDIMIRMFCNEERVDMAIQIWDEMKAKGVL 468

Query: 429 PLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
           P     + L+  L +  +L D   + +EML+  I         LK+A  ++ R
Sbjct: 469 PGMHLFSTLINSLCHEHKLEDACTYFQEMLDVGIRPPATMFSNLKQALLDDGR 521


>gi|449465535|ref|XP_004150483.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like [Cucumis sativus]
          Length = 542

 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 133/473 (28%), Positives = 231/473 (48%), Gaps = 12/473 (2%)

Query: 16  IIPSSSSTTTSPTSH---NPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESAL 72
           +IP+ + T+   T H   +  +  +    + +++  I+  A   C++++   +  IES L
Sbjct: 54  LIPNRNYTSHRSTHHRIEHSKQDLKASQKSIVESDEIAQDAEKFCKLISKNPNSCIESLL 113

Query: 73  ACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA--GRGQRLSPYAWNLMVDVLGKNGRFE 130
               +  +P L+ EVL+   ++   A+ FFRWA   +G + +  ++NL+++ LGK  +F 
Sbjct: 114 DGAPMELSPALIVEVLKKLSNAGFLALSFFRWAEKQKGFKHTTESYNLLIEALGKIKQFN 173

Query: 131 QMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS 190
            +WN V  MK  G+LS  TFA I   Y  A K  EAV SF+ M   G +  V   N LL 
Sbjct: 174 VIWNLVSDMKRKGILSRETFALITRRYARARKVKEAVESFEKMEKFGFQMGVSDFNRLLD 233

Query: 191 AICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW 249
            +C+  N   +A E  +++K     PD  S+ ILLEGW ++ N+ + N+ + EM  R E 
Sbjct: 234 TLCKSRN-VKKAQEVFDKMKHGRFKPDIKSYTILLEGWGQDQNLLKLNEVYREM--RDEG 290

Query: 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV 309
               V+ +   +    + ++ DEA++    M+ +N  P+   F   ++ L        A+
Sbjct: 291 FEPDVVTFGILINAHCKARKYDEAIRLFHEMEAKNIKPSPHVFCTLINGLGSEKRLKEAL 350

Query: 310 QLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFE 369
           + ++ +   GF   P    YNAV+G  C +  +   +R  D+M   G  P+S TY++I  
Sbjct: 351 EFFEQLKLSGF--APEAPTYNAVVGAYCWSMKMAYAYRMVDEMRKSGVGPNSRTYDIILH 408

Query: 370 CLIKNKRVHEVEKFFHEMIKNE-WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 428
            LIK ++  E    F  M +    +PT       I M  + +  ++AI+IW+ +   G+L
Sbjct: 409 HLIKGRKSKEAYSVFQRMSREPGCEPTLSTYDIMIRMFCNEERVDMAIQIWDEMKAKGVL 468

Query: 429 PLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
           P     + L+  L +  +L D   + +EML+  I         LK+A  ++ R
Sbjct: 469 PGMHLFSTLINSLCHEHKLEDACTYFQEMLDVGIRPPATMFSNLKQALLDDGR 521


>gi|297841875|ref|XP_002888819.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297334660|gb|EFH65078.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 512

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 135/463 (29%), Positives = 230/463 (49%), Gaps = 19/463 (4%)

Query: 42  THLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDF 101
           T + A  +S  A  IC+IL+  +   +E+ L    +  +P L+ EVL+   ++   A+  
Sbjct: 57  TQVSANDVSQDADKICKILSKFTDSKVETLLNEASVKLSPALIEEVLKKLSNAGVLALSV 116

Query: 102 FRWA--GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCG 159
           F+WA   +G + +   +N +++ LGK  +F+ +WN V  MK+  +LS  TFA I   Y  
Sbjct: 117 FKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWNLVDDMKQKKLLSKDTFALISRRYAR 176

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
           A K  EA+ +F  M  +G + +    N +L  + +  N       F    KK  +PD  S
Sbjct: 177 ARKVKEAITAFHKMEDYGFKMESSDFNRMLDILSKSRNVGDAQKVFDKMKKKRFEPDIKS 236

Query: 220 FAILLEGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           + ILLEGW +E N+   N+ +GEM  E FE  P+ V+AY   +    + K+ DEA++F  
Sbjct: 237 YTILLEGWGQELNLLRVNEVYGEMKDEGFE--PD-VVAYGIIINAYCKAKKYDEAVRFFN 293

Query: 279 VMKGENCFPTLKFFS---NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGL 335
            M+  NC P+   F    N L    KLND   A++ ++     GF L      YNA++G 
Sbjct: 294 EMEQRNCKPSPHIFCSLINGLGSEKKLND---ALEFFERSKSSGFPL--EAPTYNALVGA 348

Query: 336 LCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 395
            C +  +++ F+  D+M   G  P++ TY++I   LI+ +R  E  + + +M     +PT
Sbjct: 349 YCWSQRMEDAFKTVDEMRSKGIGPNARTYDIILHHLIRMQRTKEAYEVYQKM---SCEPT 405

Query: 396 PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 455
                  + M  + +  ++AI+IW+ +   G+LP     + L+  L +  +L +   +  
Sbjct: 406 VSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFN 465

Query: 456 EMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLERRCKT 496
           EML+  I        +LK+   +E R   + D+   ++R  KT
Sbjct: 466 EMLDVGIRPPGHLFSRLKQTLLDEGRKDKVADLAVKMDRLRKT 508


>gi|326502308|dbj|BAJ95217.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 513

 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 106/312 (33%), Positives = 174/312 (55%), Gaps = 6/312 (1%)

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQEN-QTSRALEFLNRVKKIVDPDGDSFAILLEGW 227
           +F  M  +G+++D  A+NSLLSA+CR      +RA   + R +    PD DS+AILLEG 
Sbjct: 185 AFVEMPRYGMDRDTPALNSLLSALCRASRLDDARAAIPVARAEAGTRPDADSYAILLEGC 244

Query: 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ---VDEALKFLRVMKGEN 284
           E  GN   A + F EMV   +++P +V AY++FL TL+       + +A+++L V++   
Sbjct: 245 EAAGNAAVAREVFDEMVHALDFDPANVPAYDSFLTTLVSSGSSTALSDAMEYLAVLRRYR 304

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
           C P  KF   AL   ++  +   AV LWD  V +   L+P+  MY  +I L       + 
Sbjct: 305 CSPGEKFLRAALAAYLEARELRSAVVLWDEFV-LRRGLVPDKEMYTTMIMLQGTLGHAEV 363

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
             ++ D+M  +G FPD+ TYN++ + L+K +++ E    F EM+KNE  P   NC+ A+ 
Sbjct: 364 TVKYLDEMAIYGVFPDADTYNVVLKLLLKGRKLREASAIFKEMVKNECWPNEANCSLALG 423

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 464
           M LD  + +  I++W  +  N + PLE   N L+  L++   L +  ++AE+M+++ I +
Sbjct: 424 MFLDTRDWDTGIKVWKCMAANSLPPLEEGGNMLVSKLKD-EMLPEACKYAEDMIDQGIKL 482

Query: 465 YEVTMHKLKKAF 476
              T+ KLK + 
Sbjct: 483 SSSTLTKLKHSL 494


>gi|255558584|ref|XP_002520317.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540536|gb|EEF42103.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 439

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 127/429 (29%), Positives = 215/429 (50%), Gaps = 12/429 (2%)

Query: 68  IESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVLGK 125
           + +AL   GI  +P++V +VL+   ++   A  FF WA +      S  A++ M++ L K
Sbjct: 9   LHTALDQNGIRVSPEIVEDVLRRFENAGMVAYRFFEWAEKQLHYTHSVRAYHTMIESLAK 68

Query: 126 NGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAV 185
             +++ MW+ +  MK   +L++ TF  I   Y  A K +EAV +F+VM  + V  ++ A 
Sbjct: 69  IRQYQIMWDLINAMKRKRMLNVETFCIIMRKYARAQKLEEAVYTFNVMEKYDVPPNLAAF 128

Query: 186 NSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245
           N L SA+C+ +N   +A E  +  K    PD  ++ ILLEGW K  N+ +A + F EMV+
Sbjct: 129 NGLFSALCKSKN-VRKAQEIFDSSKDRFVPDSKTYTILLEGWGKTPNLPKAREIFREMVD 187

Query: 246 RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS 305
               +P+ ++ Y   +  L +  +VDEAL  ++ M    C PT   +S  +      N  
Sbjct: 188 -VGCSPD-IVTYGIMVDILCKAGRVDEALDIVKEMDLTICKPTSFIYSVLIHTYGIENRI 245

Query: 306 THAVQLWDIMVGIGFN-LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTY 364
             AV   D  +G+  N +  ++  YNA+IG  C  +   NV+R  ++M + G  P+S T 
Sbjct: 246 EDAV---DTFLGMEKNGVKADVAAYNALIGAFCKVNKFKNVYRVLNEMDYKGMQPNSRTL 302

Query: 365 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 424
           N+I   LI      E  + F  MIK   +P        I M  + +E E+A+++W Y+ +
Sbjct: 303 NIILNNLIARGETDEAFRVFRRMIK-VCEPDADTYTMMIKMFCERNELEMALKVWKYMKK 361

Query: 425 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMR 484
              +P   + + L+ GL   G +S      E+M+ + I    VT  +L+     E R   
Sbjct: 362 KHFVPSMHTFSVLINGLCEEGDVSHACVMLEDMIEKGIRPSGVTFGRLRHLLIKEGRE-- 419

Query: 485 DIFDSLERR 493
           D+ + L+++
Sbjct: 420 DVLEFLQQK 428


>gi|255580475|ref|XP_002531063.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529358|gb|EEF31324.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 128/438 (29%), Positives = 218/438 (49%), Gaps = 11/438 (2%)

Query: 49  ISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA--G 106
           I    R IC +L+   +  IE  L       +P LV EVL+   ++ + A+ FF+WA   
Sbjct: 81  IIEDTRNICRLLSKNPNSSIEKLLLGASFKVSPALVLEVLKRLSNAGALALSFFKWAEKQ 140

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           +G   +  ++N ++D LGK  +F  +WN V  MK  GVL+  TFA I   Y  +GK  EA
Sbjct: 141 KGFMYNTESYNALIDSLGKIKQFNMIWNLVNDMKRKGVLTKETFALISRRYARSGKVKEA 200

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLE 225
           + +F+ M   G++ +    N LL  + +     S    F   ++++ V PD  S+ ILLE
Sbjct: 201 MNTFEKMEKFGLKIESTDFNRLLDTLIKSRQVLSAQNVFDKMKIRRFV-PDIKSYTILLE 259

Query: 226 GWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           GW +E N+ + ++ + EM  E FE  P+ V+ Y   +    + ++ D+A++  R M+ +N
Sbjct: 260 GWGQEKNLLKLDEVYREMKDEGFE--PD-VVTYGILINAYCKVRKYDDAIELFREMESKN 316

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
           C P+   F   ++ L  +   + A++ +      GF   P    YNAV+G  C +  +D+
Sbjct: 317 CQPSPHIFCTLINGLGSVRRLSEALEFFRRSKASGF--APETPTYNAVVGAYCWSMRIDD 374

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM-IKNEWQPTPLNCATAI 403
            +R  D+M   G  P+S TY++I   LIK ++  E    F +M  + E +PT       +
Sbjct: 375 AYRMVDEMRKSGVGPNSRTYDIILHHLIKAEKTTEAFSVFEKMSSEEECEPTVSTYDIIV 434

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
            M  + D+ E AI++W+ +   G+ P     + L+  L +  +L    ++ +EML+  I 
Sbjct: 435 RMFCNMDKVESAIKVWDRMKAKGVHPGMHMFSILINSLCHENKLDIACKYFQEMLDVGIR 494

Query: 464 IYEVTMHKLKKAFYNESR 481
                   LK+A   + R
Sbjct: 495 PPAALFSHLKQALIEDGR 512


>gi|449463418|ref|XP_004149431.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Cucumis sativus]
 gi|449499065|ref|XP_004160711.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Cucumis sativus]
          Length = 439

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 122/428 (28%), Positives = 212/428 (49%), Gaps = 10/428 (2%)

Query: 68  IESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVLGK 125
           +E+AL  TGI  +P++   VL+   ++   A  FF WA + +    S  A++ M++ L K
Sbjct: 9   LETALDQTGIRISPEIAEPVLRRFENAGMLAYRFFEWASKQRNYVHSVRAYHSMIESLAK 68

Query: 126 NGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAV 185
             +++ +W+ V  M+   +L++  F  I   Y  A K +EAV +F+VM  + ++ +V A 
Sbjct: 69  IRQYQMVWDLVNAMRNKEILNVEAFCIIMRKYARAQKVEEAVYTFNVMEKYNMKPNVAAF 128

Query: 186 NSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245
           N LLSA+C+ +N   +A E  + +K    PD  +++IL+EGW +  N+ +A + + EM++
Sbjct: 129 NGLLSALCKSKN-VRKAQEIFDNMKDQFVPDSKTYSILIEGWGRAPNLPKAREIYREMID 187

Query: 246 RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS 305
                P+ V  Y   +  L +  +VDEA++ ++ M   NC P+   +S  +      N  
Sbjct: 188 S-GCIPDEV-TYSIMVDVLCKAGRVDEAVEIVKEMDYNNCKPSSFIYSVLVHTYGVENRI 245

Query: 306 THAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYN 365
             AV  +  M   G  +M ++  YNA+I   C  + + NV+R    M   G  P+S T N
Sbjct: 246 EDAVSTFLEMERNG--VMADVAAYNALISAFCKANKMKNVYRVLKDMDLKGVNPNSRTCN 303

Query: 366 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 425
           +I   LI      E  K F  MIK   +P   +    I M     E ++A++IW Y+ + 
Sbjct: 304 IIINSLIGRGETDEAFKIFRRMIK-VCEPDVDSYTMIIKMFCGRKELDMALKIWKYMKKK 362

Query: 426 GILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRD 485
             +P   + + L+ GL  +G  +      EEM+ + I     T  +L+     E R  +D
Sbjct: 363 QFVPSMHTFSVLINGLCQIGNATQACVLLEEMIEKGIRPSGATFGRLRHLLIKEGR--KD 420

Query: 486 IFDSLERR 493
           +   L+ +
Sbjct: 421 VLKFLQEK 428


>gi|225443015|ref|XP_002267278.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Vitis vinifera]
          Length = 624

 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 130/460 (28%), Positives = 219/460 (47%), Gaps = 16/460 (3%)

Query: 23  TTTSPTSHNPH---RPTRPRFPTHLDAP-YISSSARIICEILAHASSDDIESALACTGII 78
           + +SP +H+       T  + P  L +  YI+  +RI+ +        D+E  L      
Sbjct: 20  SLSSPKTHHSRLFSSQTILQDPNSLSSSQYINEISRILSDF--RDPHHDLERPLTAFSQK 77

Query: 79  PTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAV 136
            TP LV +VL+   +   SA  FF WA R  G   S  +++++VD+LG + +F  +W+ +
Sbjct: 78  ITPGLVEQVLKRCKNLGFSAHRFFLWAKRLPGFEHSKESYHILVDILGSSKQFPLIWDFL 137

Query: 137 RVMKEDGVLSL--PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194
             M+E     +    F  IF +YC A    +A+ +F  M   GV+  V  V+ LL  +C+
Sbjct: 138 SDMRETRCCEICPEIFWLIFRAYCRANLPGDAIRAFHQMGDFGVKAGVGDVDQLLYVLCK 197

Query: 195 QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV 254
           +++   +A EF ++V   V P+  +++IL+ GW   G+  EA K F EM ER       V
Sbjct: 198 RKH-VKQAQEFFDKVNVEVMPNAKTYSILMRGWGDVGDSSEARKLFEEMRER--GCAVDV 254

Query: 255 LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314
           +AY + L  L +G  VDEA K  R M      P    +S  +    ++ND   A Q+ D 
Sbjct: 255 VAYNSLLEALCKGGNVDEAYKLFREMGSNGLAPDACSYSIFIRAYCEVNDIHSAFQVLDR 314

Query: 315 MVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN 374
           M    +NL+PN+  YN ++  LC ++ VD  ++  D+M+  G  PD  +YN I      +
Sbjct: 315 MRR--YNLVPNVFTYNCIVKKLCKSEKVDEAYQLLDEMIERGVSPDLWSYNAIQAFHCDH 372

Query: 375 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 434
             V++  +    M K    P        + MLL     +   ++W  + E G  P  ++ 
Sbjct: 373 CEVNKALRLISRMEKENCMPDRHTYNMVLKMLLRVGRFDRVTDVWGGMEERGFYPAASTY 432

Query: 435 NELLVGL-RNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 473
             ++ G  +  G+L +  ++ E M++  I  Y  T+  L+
Sbjct: 433 AVMVHGFCKKKGKLEEACKYFEMMIDDGIPPYSCTVELLR 472


>gi|297842515|ref|XP_002889139.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297334980|gb|EFH65398.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 482

 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 120/435 (27%), Positives = 213/435 (48%), Gaps = 8/435 (1%)

Query: 49  ISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRG 108
           ++  A+ I ++L  +    I+SAL  +G+  +P++V +VL    ++   A  FF+W+ + 
Sbjct: 33  VADVAKNISKVLMSSPQLVIDSALDQSGLRVSPEVVEDVLYRFRNAGLLAYRFFQWSEKQ 92

Query: 109 QRL--SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           +    S  A+++M++   K  +++ MW+ +  M +  +L++ TF  +   Y  A K DEA
Sbjct: 93  RHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMMKKKMLNVETFCIVMRKYARAQKVDEA 152

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
           + +F+VM  + +  ++VA N LLSA+C+ +N   +A E    ++    PD  +++ILLEG
Sbjct: 153 IYAFNVMEKYDLPPNLVAFNGLLSALCKSKN-VRKAQEIFENMRDRFTPDSKTYSILLEG 211

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
           W KE N+ +A + F EMV+    +   ++ Y   +  L +  +VDEAL  +R M    C 
Sbjct: 212 WGKEPNLPKAREVFREMVD--AGSLPDIVTYSIMVDILCKAGRVDEALGIVRSMDPSICK 269

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346
           PT   +S  +           AV  +  M   G  +  ++ ++N++IG  C  + + NV+
Sbjct: 270 PTTFIYSVLVHTYGTETRLEEAVDTFLEMERSG--MKADVAVFNSLIGAFCKTNRMKNVY 327

Query: 347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406
           R   +M   G  P+S + N+I   LI      E    F +MIK   +P        I M 
Sbjct: 328 RVLKEMKSKGVTPNSKSCNIILRHLIDRGEKDEAFDVFRKMIK-VCEPDADTYTMMIKMF 386

Query: 407 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYE 466
            +  E E A ++W Y+ + G+ P   + + L+ GL             EEM+   I    
Sbjct: 387 CEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEEPNTQKACVLLEEMIEMGIRPSG 446

Query: 467 VTMHKLKKAFYNESR 481
            T  +L++    E R
Sbjct: 447 ATFGRLRQLLLKEDR 461



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 60/308 (19%), Positives = 122/308 (39%), Gaps = 43/308 (13%)

Query: 110 RLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           R +P    ++++++  GK     +     R M + G L  + T++ + D  C AG+ DEA
Sbjct: 197 RFTPDSKTYSILLEGWGKEPNLPKAREVFREMVDAGSLPDIVTYSIMVDILCKAGRVDEA 256

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
           +         G+      V S+  +IC+                    P    +++L+  
Sbjct: 257 L---------GI------VRSMDPSICK--------------------PTTFIYSVLVHT 281

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
           +  E  +EEA  TF EM ER     + V  + + +    +  ++    + L+ MK +   
Sbjct: 282 YGTETRLEEAVDTFLEM-ERSGMKAD-VAVFNSLIGAFCKTNRMKNVYRVLKEMKSKGVT 339

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346
           P  K  +  L  L+   +   A  ++  M+ +     P+   Y  +I + C   +++   
Sbjct: 340 PNSKSCNIILRHLIDRGEKDEAFDVFRKMIKV---CEPDADTYTMMIKMFCEKKEMETAD 396

Query: 347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406
           + +  M   G FP   T++++   L +     +      EMI+   +P+         +L
Sbjct: 397 KVWKYMRKKGVFPSMHTFSVLINGLCEEPNTQKACVLLEEMIEMGIRPSGATFGRLRQLL 456

Query: 407 LDADEPEI 414
           L  D  ++
Sbjct: 457 LKEDREDV 464


>gi|11079489|gb|AAG29201.1|AC078898_11 hypothetical protein [Arabidopsis thaliana]
          Length = 481

 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 119/435 (27%), Positives = 217/435 (49%), Gaps = 8/435 (1%)

Query: 49  ISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRG 108
           ++  A+ I ++L  +    ++SAL  +G+  + ++V +VL    ++      FF+W+ + 
Sbjct: 32  VADVAKNISKVLMSSPQLVLDSALDQSGLRVSQEVVEDVLNRFRNAGLLTYRFFQWSEKQ 91

Query: 109 QRL--SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           +    S  A+++M++   K  +++ MW+ +  M++  +L++ TF  +   Y  A K DEA
Sbjct: 92  RHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRKKKMLNVETFCIVMRKYARAQKVDEA 151

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
           + +F+VM  + +  ++VA N LLSA+C+ +N   +A E    ++    PD  +++ILLEG
Sbjct: 152 IYAFNVMEKYDLPPNLVAFNGLLSALCKSKN-VRKAQEVFENMRDRFTPDSKTYSILLEG 210

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
           W KE N+ +A + F EM++    +P+ ++ Y   +  L +  +VDEAL  +R M    C 
Sbjct: 211 WGKEPNLPKAREVFREMIDA-GCHPD-IVTYSIMVDILCKAGRVDEALGIVRSMDPSICK 268

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346
           PT   +S  +      N    AV  +  M   G  +  ++ ++N++IG  C  + + NV+
Sbjct: 269 PTTFIYSVLVHTYGTENRLEEAVDTFLEMERSG--MKADVAVFNSLIGAFCKANRMKNVY 326

Query: 347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406
           R   +M   G  P+S + N+I   LI+     E    F +MIK   +P        I M 
Sbjct: 327 RVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMIK-VCEPDADTYTMVIKMF 385

Query: 407 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYE 466
            +  E E A ++W Y+ + G+ P   + + L+ GL             EEM+   I    
Sbjct: 386 CEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMIEMGIRPSG 445

Query: 467 VTMHKLKKAFYNESR 481
           VT  +L++    E R
Sbjct: 446 VTFGRLRQLLIKEER 460



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 60/310 (19%), Positives = 126/310 (40%), Gaps = 14/310 (4%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           A+N ++  L K+    +       M++       T++ + + +       +A   F  M 
Sbjct: 169 AFNGLLSALCKSKNVRKAQEVFENMRDRFTPDSKTYSILLEGWGKEPNLPKAREVFREMI 228

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK----IVDPDGDSFAILLEGWEKE 230
             G   D+V  + ++  +C+      R  E L  V+     I  P    +++L+  +  E
Sbjct: 229 DAGCHPDIVTYSIMVDILCK----AGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTE 284

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
             +EEA  TF EM ER     + V  + + +    +  ++    + L+ MK +   P  K
Sbjct: 285 NRLEEAVDTFLEM-ERSGMKAD-VAVFNSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSK 342

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
             +  L  L++  +   A  ++  M+ +     P+   Y  VI + C   +++   + + 
Sbjct: 343 SCNIILRHLIERGEKDEAFDVFRKMIKV---CEPDADTYTMVIKMFCEKKEMETADKVWK 399

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
            M   G FP   T++++   L + +   +      EMI+   +P+ +     +  LL  +
Sbjct: 400 YMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMIEMGIRPSGVTFGR-LRQLLIKE 458

Query: 411 EPEIAIEIWN 420
           E E  ++  N
Sbjct: 459 EREDVLKFLN 468


>gi|242064592|ref|XP_002453585.1| hypothetical protein SORBIDRAFT_04g008520 [Sorghum bicolor]
 gi|241933416|gb|EES06561.1| hypothetical protein SORBIDRAFT_04g008520 [Sorghum bicolor]
          Length = 436

 Score =  174 bits (442), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 147/481 (30%), Positives = 230/481 (47%), Gaps = 62/481 (12%)

Query: 25  TSPTSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGI--IPTPD 82
            S  +     P+ P FPT+ +A  +    RI  +ILA  + DD+++AL    I  + T D
Sbjct: 2   ASSAAKRARDPSSPAFPTNKEASELPHKTRIFYDILASRADDDMDAALDEADIRGVTTAD 61

Query: 83  LVHEVLQLSYDSPSSAVDFF----RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRV 138
            V +VL LSY  P +A  FF     W       SPY+WNL+VD+LG N  F ++      
Sbjct: 62  -VEQVLHLSYAHPHAAAAFFHWAGHWHLGHDNHSPYSWNLVVDILGANRLFTRI------ 114

Query: 139 MKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN- 197
               G   L  F                    D M  +G+ +D+ A+NS LSA+CR +  
Sbjct: 115 ---PGCSPLKAF-------------------MDDMPRYGMARDMSALNSFLSALCRADRL 152

Query: 198 QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
             +RA   +   +     D DS+AILLE  E   +   A     EMV      P+++ AY
Sbjct: 153 DDARAAIPVAHAEAGTLLDADSYAILLECCEAAADTRGARDVCDEMVHDIGVGPDNMPAY 212

Query: 258 ETFLITLIRGKQ---VDEALKFLRVMKGENCFPTL--KFFSNALDILVKLNDSTHAVQLW 312
           E FL  L+       + EA+ +L  +   +C P    +FF   + + ++  +   A  LW
Sbjct: 213 EAFLAMLVSSNSSMALLEAMYYLDFLNKRSCSPGAGERFFCAVVAVHLEAGELRGATYLW 272

Query: 313 DIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 372
           D  VG    L+P++ MYN +I L  +   V+ +  + D M+F+G  PD+ TYN+    L+
Sbjct: 273 DKFVG-RRGLVPDMEMYNTMIMLQGSLGHVEVIVDYLDDMIFNGLVPDTNTYNVFLLILL 331

Query: 373 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 432
           + + +H+    F EM+KNE  P   NC+ A+ + LDA   E  I IW+ ++ENG+ PLE 
Sbjct: 332 ERRELHKAATIFSEMVKNECWPNEGNCSLALRLFLDARYWETGIRIWSCVVENGLPPLEE 391

Query: 433 SANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLER 492
             N L+  L++           +++ +  +   ++ M K+KK         RDI+D L R
Sbjct: 392 CGNMLVSKLKD-----------DKLSSSTLSKLKLCMQKIKK---------RDIYDDLLR 431

Query: 493 R 493
           +
Sbjct: 432 K 432


>gi|334183972|ref|NP_177860.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806398|sp|Q9FVX2.2|PP129_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g77360, mitochondrial; Flags: Precursor
 gi|332197848|gb|AEE35969.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 517

 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 119/435 (27%), Positives = 217/435 (49%), Gaps = 8/435 (1%)

Query: 49  ISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRG 108
           ++  A+ I ++L  +    ++SAL  +G+  + ++V +VL    ++      FF+W+ + 
Sbjct: 68  VADVAKNISKVLMSSPQLVLDSALDQSGLRVSQEVVEDVLNRFRNAGLLTYRFFQWSEKQ 127

Query: 109 QRL--SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           +    S  A+++M++   K  +++ MW+ +  M++  +L++ TF  +   Y  A K DEA
Sbjct: 128 RHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRKKKMLNVETFCIVMRKYARAQKVDEA 187

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
           + +F+VM  + +  ++VA N LLSA+C+ +N   +A E    ++    PD  +++ILLEG
Sbjct: 188 IYAFNVMEKYDLPPNLVAFNGLLSALCKSKN-VRKAQEVFENMRDRFTPDSKTYSILLEG 246

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
           W KE N+ +A + F EM++    +P+ ++ Y   +  L +  +VDEAL  +R M    C 
Sbjct: 247 WGKEPNLPKAREVFREMIDA-GCHPD-IVTYSIMVDILCKAGRVDEALGIVRSMDPSICK 304

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346
           PT   +S  +      N    AV  +  M   G  +  ++ ++N++IG  C  + + NV+
Sbjct: 305 PTTFIYSVLVHTYGTENRLEEAVDTFLEMERSG--MKADVAVFNSLIGAFCKANRMKNVY 362

Query: 347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406
           R   +M   G  P+S + N+I   LI+     E    F +MIK   +P        I M 
Sbjct: 363 RVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMIK-VCEPDADTYTMVIKMF 421

Query: 407 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYE 466
            +  E E A ++W Y+ + G+ P   + + L+ GL             EEM+   I    
Sbjct: 422 CEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMIEMGIRPSG 481

Query: 467 VTMHKLKKAFYNESR 481
           VT  +L++    E R
Sbjct: 482 VTFGRLRQLLIKEER 496



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/304 (18%), Positives = 123/304 (40%), Gaps = 13/304 (4%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           A+N ++  L K+    +       M++       T++ + + +       +A   F  M 
Sbjct: 205 AFNGLLSALCKSKNVRKAQEVFENMRDRFTPDSKTYSILLEGWGKEPNLPKAREVFREMI 264

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK----IVDPDGDSFAILLEGWEKE 230
             G   D+V  + ++  +C+      R  E L  V+     I  P    +++L+  +  E
Sbjct: 265 DAGCHPDIVTYSIMVDILCK----AGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTE 320

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
             +EEA  TF EM ER     + V  + + +    +  ++    + L+ MK +   P  K
Sbjct: 321 NRLEEAVDTFLEM-ERSGMKAD-VAVFNSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSK 378

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
             +  L  L++  +   A  ++  M+ +     P+   Y  VI + C   +++   + + 
Sbjct: 379 SCNIILRHLIERGEKDEAFDVFRKMIKV---CEPDADTYTMVIKMFCEKKEMETADKVWK 435

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
            M   G FP   T++++   L + +   +      EMI+   +P+ +       +L+  +
Sbjct: 436 YMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMIEMGIRPSGVTFGRLRQLLIKEE 495

Query: 411 EPEI 414
             ++
Sbjct: 496 REDV 499


>gi|356534319|ref|XP_003535704.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like [Glycine max]
          Length = 507

 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 116/437 (26%), Positives = 222/437 (50%), Gaps = 13/437 (2%)

Query: 30  HNPHRPTRPR-FPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVL 88
           H+ + P++      H   P  +  A  IC IL+   +  +++ LA     P+P+LV EVL
Sbjct: 34  HHSNGPSKTHTLAFHTAQPRPTPDAEAICRILSTTPASTVDACLAAVPAKPSPELVLEVL 93

Query: 89  QLSYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS 146
               ++   A+ FFRWA +      +  A++ +++ LGK  +F+ +W  V  MK+  +L+
Sbjct: 94  NKLSNAGVLALSFFRWAEKQSEFKHTTEAFHALIEALGKIRQFKMIWTLVNDMKQRKLLT 153

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206
             TF+ +   Y  A K  EA+ +F+ M  +G++  V   N L+  +C+ ++    A E  
Sbjct: 154 SDTFSLVARRYARARKAKEAIKTFEKMEHYGLKPHVSDFNKLVDVLCKSKS-VEEAHEVF 212

Query: 207 NRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITL 264
           ++++K+ +DPD  S+ ILLEGW ++ N+ + N+   EM ++ F+ +   V+AY   +   
Sbjct: 213 DKMRKLRLDPDIKSYTILLEGWSQQQNLIKVNEVCREMEDKGFQLD---VVAYGIIMNAH 269

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
            + K+ DEA+     MK     P+   +   ++ L        A++ +++    GF  +P
Sbjct: 270 CKAKKFDEAIGLYHEMKARGVRPSPHVYCTLINGLGSDKRLDEALEFFEVSKASGF--VP 327

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
               YNAV+G  C +  +D+ +R   +M   G  P+S T++++   LIK +R+ E    F
Sbjct: 328 EAPTYNAVVGAYCWSLRMDDAYRMVGEMKKCGIGPNSRTFDIVLHHLIKGRRIEEASSVF 387

Query: 385 HEMIKNEW--QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 442
             M   E+  +P+       + M  + +  ++A+ +W+ +   GILP     + L+  L 
Sbjct: 388 RRMNGGEFGCEPSVSTYEIMVRMFCNEELLDMAVAVWDEMKGKGILPGMHMFSTLVCALC 447

Query: 443 NLGRLSDVRRFAEEMLN 459
           +  +L +  ++ +EML+
Sbjct: 448 HESKLDEACKYFQEMLD 464



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/273 (21%), Positives = 131/273 (47%), Gaps = 13/273 (4%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKY 163
           R  RL P   ++ ++++   +     ++    R M++ G  L +  +  I +++C A K+
Sbjct: 216 RKLRLDPDIKSYTILLEGWSQQQNLIKVNEVCREMEDKGFQLDVVAYGIIMNAHCKAKKF 275

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF--LNRVKKIVDPDGDSFA 221
           DEA+  +  M   GV        +L++ +   + +   ALEF  +++    V P+  ++ 
Sbjct: 276 DEAIGLYHEMKARGVRPSPHVYCTLINGL-GSDKRLDEALEFFEVSKASGFV-PEAPTYN 333

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            ++  +     +++A +  GEM ++    P +   ++  L  LI+G++++EA    R M 
Sbjct: 334 AVVGAYCWSLRMDDAYRMVGEM-KKCGIGP-NSRTFDIVLHHLIKGRRIEEASSVFRRMN 391

Query: 282 GE--NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
           G    C P++  +   + +         AV +WD M G G  ++P + M++ ++  LC+ 
Sbjct: 392 GGEFGCEPSVSTYEIMVRMFCNEELLDMAVAVWDEMKGKG--ILPGMHMFSTLVCALCHE 449

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 372
             +D   ++F +M+  G  P +  ++ + E L+
Sbjct: 450 SKLDEACKYFQEMLDVGIRPPAKMFSTLKEALV 482


>gi|357128238|ref|XP_003565781.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like [Brachypodium distachyon]
          Length = 547

 Score =  174 bits (441), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 118/437 (27%), Positives = 214/437 (48%), Gaps = 9/437 (2%)

Query: 49  ISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRG 108
           +S  A  +C +++      I SAL   G+  +P+LV EVL+   ++   A+ FFRWA R 
Sbjct: 95  VSEVAERVCRVVSSQPEPRIASALDALGVNMSPELVAEVLRNLSNAGILALAFFRWAERQ 154

Query: 109 Q--RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           Q  R +  +++ +++ LGK  +F  +W+ V  M+  G+LS  TF  I   Y  A K  EA
Sbjct: 155 QGFRYTAESFHNLIEALGKIKQFRLVWSLVEAMRCRGLLSKDTFRLIVRRYARARKVKEA 214

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK--IVDPDGDSFAILL 224
           V +F+ MS  G++ D+   N L+  + + + Q  +A      +K+     PD  ++ +L+
Sbjct: 215 VETFEKMSSFGLKADLSDYNWLIDVLSKSK-QVKKAHAIFKEMKRNGRFVPDLKTYTVLM 273

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           EGW  E ++      + EM++     P+ V+AY T + +  +  + DEA+K  R M+   
Sbjct: 274 EGWGHEKDLLMLKSVYQEMLDA-GIKPD-VVAYGTLISSFCKSGKCDEAIKVFREMEANG 331

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
           C P+   +   ++ L        A++ +++    GF +   +   NAV+G  C +    +
Sbjct: 332 CMPSPHVYCMLINGLGSEERLDEALKYFELSKASGFPM--EVPTCNAVVGAYCRSSKFQH 389

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
            F+  D+M   G  P++ TY++I + LIK++++ E    F  M     +P        + 
Sbjct: 390 AFKMVDEMRKTGIGPNARTYDIILQYLIKSQKIEEAYNVFQRMGMEGCEPQLNTYTMMVG 449

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 464
           M    +  ++A+++W  + E G+LP     + L+ GL    RL +   + +EML++ I  
Sbjct: 450 MFCSNERVDMALKVWKQMKEKGVLPCMHMFSSLINGLCFENRLEEACVYFQEMLDKGIRP 509

Query: 465 YEVTMHKLKKAFYNESR 481
                  LK+A     R
Sbjct: 510 PGQLFSNLKEALIEGGR 526


>gi|227463004|gb|ACP39954.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463006|gb|ACP39955.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 547

 Score =  174 bits (441), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 122/443 (27%), Positives = 219/443 (49%), Gaps = 19/443 (4%)

Query: 49  ISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA--G 106
           +   A  IC +L+  S    +  L    I  +P LV EVL+   ++   A+ FF WA   
Sbjct: 91  LEQDAARICTLLSTHSGSHADKLLEDASIKVSPSLVVEVLKRLSNAGVIALSFFTWAEKQ 150

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           +G + +  ++N +++ LGK  +F+ + + V  MK   +L+  TFA I   +  A K +EA
Sbjct: 151 KGFKYNTESYNALIEALGKIKQFKLIRSLVNEMKSRKLLNKDTFALISRRHARARKVEEA 210

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-----KKIVDPDGDSFA 221
           + +F+ M   G + +    N LL  +C+     SR +E  N+V     K+   PD  S+ 
Sbjct: 211 IEAFERMEEFGFKLETSDFNRLLDTLCK-----SRHVEKANKVFDKMKKRRFVPDIKSYT 265

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           ILLEGW KE N+   ++ + EM  +++     V+ Y   +    + K+ D A++    M+
Sbjct: 266 ILLEGWGKEHNLLRLDEVYLEM--KYDGFEPDVVTYGILISAYCKAKKYDAAIELFHEME 323

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
            +NC PT   +   ++ L      + A++ ++     GF   P    YN+++G  C +  
Sbjct: 324 AKNCKPTPHVYCTLINGLGSEKRLSEALEFFERFKSCGFT--PEAPTYNSLVGAYCWSMR 381

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE--WQPTPLNC 399
           +D+ F+  D+M  H A P+S TY++I   LIK +R +E    F +M  NE   +PT    
Sbjct: 382 IDDAFQVIDEMRKHSAGPNSRTYDIILHHLIKARRTNEAYFRFQKM-SNEPGCEPTVSTY 440

Query: 400 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
              + M  + D  ++A ++W+ +   G+LP     ++L+  L +  +L +  ++ +EML+
Sbjct: 441 EIIVRMFCNEDRVDLAKQVWDQMKAKGVLPGMHMYSDLITSLCHKNKLGEACKYFQEMLD 500

Query: 460 RRILIYEVTMHKLKKAFYNESRS 482
             I         LK+A  +E ++
Sbjct: 501 AGIRPPAKMFSNLKQALLDEGKN 523


>gi|326524964|dbj|BAK04418.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 565

 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 118/437 (27%), Positives = 212/437 (48%), Gaps = 9/437 (2%)

Query: 49  ISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRG 108
           +S  A  +C +L+      + +AL   G   +P LV EVL+   ++   A+ FFRWA R 
Sbjct: 113 VSEEAERVCRVLSTLPEPRVPAALDALGASVSPQLVAEVLKNLSNAGILALAFFRWAERQ 172

Query: 109 QRL--SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           Q    +  +++ +++ LGK  +F  +W+ V  M+  G+LS  TF  I   Y  A K  EA
Sbjct: 173 QGFVYTADSFHNLIEALGKIKQFRLVWSLVEAMRCRGLLSKDTFRLIVRRYARARKVKEA 232

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK--IVDPDGDSFAILL 224
           V +F+ M+  G++ D+   N L+  + + + Q  +A      +K+     PD  ++ +L+
Sbjct: 233 VETFEKMAGFGLKADLSDYNWLIDVLSKSK-QVKKAHAIFKEMKRNGRFVPDLKTYTVLM 291

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           EGW  E ++      + EM++     P+ V+AY   + +  +  + DEA+K  R M+   
Sbjct: 292 EGWGHEKDLLMLKSVYQEMLDA-GLQPD-VVAYGMLISSFCKSGKCDEAIKVFREMETNG 349

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
           C P+   +   ++ L        A++ +++    GF +   +   NAV+G  C +    +
Sbjct: 350 CMPSPHVYCMLINGLGSEERLDEALKYFELSKASGFPM--EVPTCNAVVGAYCRSSKFQH 407

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
            F+  D+M   G  P+S TY++I   LIK++++ E    F  M K+  +P        + 
Sbjct: 408 AFKMVDEMRKSGIGPNSRTYDIILHHLIKSQKIEEAYNVFQGMSKDGCEPQLNTYTMMVG 467

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 464
           M    +  ++A+++WN + E G+LP     + L+ GL    RL +   + +EML+R I  
Sbjct: 468 MFCSNERVDVALKVWNQMKEKGVLPCMHMFSALINGLCFENRLEEACAYFQEMLDRGIRP 527

Query: 465 YEVTMHKLKKAFYNESR 481
                  LK+A     R
Sbjct: 528 PGQLFSNLKEALIEGGR 544


>gi|115436822|ref|NP_001043145.1| Os01g0505500 [Oryza sativa Japonica Group]
 gi|56201654|dbj|BAD73118.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113532676|dbj|BAF05059.1| Os01g0505500 [Oryza sativa Japonica Group]
 gi|125570544|gb|EAZ12059.1| hypothetical protein OsJ_01942 [Oryza sativa Japonica Group]
          Length = 540

 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 123/468 (26%), Positives = 215/468 (45%), Gaps = 9/468 (1%)

Query: 18  PSSSSTTTSPTSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGI 77
           P   +T  S +   P     P       AP +S +A  +C +++      I   L   G+
Sbjct: 57  PGFCTTVGSESDVEPRFTVVPGAAQEGLAPGVSEAAERVCRVVSAQPEHRIAPVLDALGV 116

Query: 78  IPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQ--RLSPYAWNLMVDVLGKNGRFEQMWNA 135
             +P LV EVL+   ++   A+ FFRWA R Q  R S   ++ +++ LGK  +F  +W+ 
Sbjct: 117 TVSPQLVAEVLKNLSNAGILALAFFRWAERQQGFRYSAEGFHNLIEALGKIKQFRLVWSL 176

Query: 136 VRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
           V  M+    LS  TF  I   Y  A K  EAV +F+ MS  G++ D+   N L+  I  +
Sbjct: 177 VEAMRCRSCLSKDTFKIIVRRYARARKVKEAVETFEKMSSFGLKTDLSDYNWLID-ILSK 235

Query: 196 ENQTSRALEFLNRVKKIVD--PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH 253
             Q  +A      +K+     PD  ++ +L+EGW  E ++      + EM++     P+ 
Sbjct: 236 SKQVKKAHAIFKEMKRKGRFIPDLKTYTVLMEGWGHEKDLLMLKAVYQEMLDA-GIKPD- 293

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
           V+AY   +    +  + DEA+K    M+   C P+   +   ++ L  +     A++ + 
Sbjct: 294 VVAYGMLISAFCKSGKCDEAIKVFHEMEESGCMPSPHVYCMLINGLGSMERLDEALKYFQ 353

Query: 314 IMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 373
           +    GF +   +   NAVIG  C   +  + F+  D+M   G  P++ TY++I   LIK
Sbjct: 354 LSKESGFPM--EVPTCNAVIGAYCRALEFHHAFKMVDEMRKSGIGPNTRTYDIILNHLIK 411

Query: 374 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 433
           ++++ E    F  M ++  +P        + M    +  ++A+++W  + E G+LP    
Sbjct: 412 SEKIEEAYNLFQRMERDGCEPELNTYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHM 471

Query: 434 ANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
            + L+ GL    RL +   + +EML++ I         LK+A     R
Sbjct: 472 FSALINGLCFENRLEEACVYFQEMLDKGIRPPGQLFSNLKEALVEGGR 519



 Score = 40.4 bits (93), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 70/160 (43%), Gaps = 7/160 (4%)

Query: 90  LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLP 148
           L +      VD  R +G G     Y  +++++ L K+ + E+ +N  + M+ DG    L 
Sbjct: 378 LEFHHAFKMVDEMRKSGIGPNTRTY--DIILNHLIKSEKIEEAYNLFQRMERDGCEPELN 435

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+  +   +C   + D A+  +  M   GV   +   ++L++ +C +       + F   
Sbjct: 436 TYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSALINGLCFENRLEEACVYFQEM 495

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFE 248
           + K + P G  F+ L E   + G +  A     E+ +R E
Sbjct: 496 LDKGIRPPGQLFSNLKEALVEGGRITLAQ----EVTQRLE 531


>gi|125526112|gb|EAY74226.1| hypothetical protein OsI_02107 [Oryza sativa Indica Group]
          Length = 540

 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 123/468 (26%), Positives = 215/468 (45%), Gaps = 9/468 (1%)

Query: 18  PSSSSTTTSPTSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGI 77
           P   +T  S +   P     P       AP +S +A  +C +++      I   L   G+
Sbjct: 57  PGFCTTVGSESDVEPRFTVVPGAAQEGLAPGVSEAAERVCRVVSAQPEHRIAPVLDALGV 116

Query: 78  IPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQ--RLSPYAWNLMVDVLGKNGRFEQMWNA 135
             +P LV EVL+   ++   A+ FFRWA R Q  R S   ++ +++ LGK  +F  +W+ 
Sbjct: 117 TVSPQLVAEVLKNLSNAGILALAFFRWAERQQGFRYSAEGFHNLIEALGKIKQFRLVWSL 176

Query: 136 VRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
           V  M+    LS  TF  I   Y  A K  EAV +F+ MS  G++ D+   N L+  I  +
Sbjct: 177 VEAMRCRSCLSKDTFKIIVRRYARARKVKEAVETFEKMSSFGLKTDLSDYNWLID-ILSK 235

Query: 196 ENQTSRALEFLNRVKKIVD--PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH 253
             Q  +A      +K+     PD  ++ +L+EGW  E ++      + EM++     P+ 
Sbjct: 236 SKQVKKAHAIFKEMKRKGRFIPDLKTYTVLMEGWGHEKDLLMLKAVYQEMLDA-GIKPD- 293

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
           V+AY   +    +  + DEA+K    M+   C P+   +   ++ L  +     A++ + 
Sbjct: 294 VVAYGMLISAFCKSGKCDEAIKVFHEMEESGCMPSPHVYCMLINGLGSMERLDEALKYFQ 353

Query: 314 IMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 373
           +    GF +   +   NAVIG  C   +  + F+  D+M   G  P++ TY++I   LIK
Sbjct: 354 LSKESGFPM--EVPTCNAVIGAYCRALEFHHAFKMVDEMRKSGIGPNTRTYDIILNHLIK 411

Query: 374 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 433
           ++++ E    F  M ++  +P        + M    +  ++A+++W  + E G+LP    
Sbjct: 412 SEKIEEAYNLFQRMERDGCEPELNTYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHM 471

Query: 434 ANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
            + L+ GL    RL +   + +EML++ I         LK+A     R
Sbjct: 472 FSALINGLCFDNRLEEACVYFQEMLDKGIRPPGQLFSNLKEALVEGGR 519



 Score = 39.3 bits (90), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 69/160 (43%), Gaps = 7/160 (4%)

Query: 90  LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLP 148
           L +      VD  R +G G     Y  +++++ L K+ + E+ +N  + M+ DG    L 
Sbjct: 378 LEFHHAFKMVDEMRKSGIGPNTRTY--DIILNHLIKSEKIEEAYNLFQRMERDGCEPELN 435

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+  +   +C   + D A+  +  M   GV   +   ++L++ +C         + F   
Sbjct: 436 TYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSALINGLCFDNRLEEACVYFQEM 495

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFE 248
           + K + P G  F+ L E   + G +  A     E+ +R E
Sbjct: 496 LDKGIRPPGQLFSNLKEALVEGGRITLAQ----EVTQRLE 531


>gi|15223927|ref|NP_177262.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169669|sp|Q9C9A2.1|PP112_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g71060, mitochondrial; Flags: Precursor
 gi|12323433|gb|AAG51696.1|AC016972_15 hypothetical protein; 31939-30407 [Arabidopsis thaliana]
 gi|332197036|gb|AEE35157.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 510

 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 131/465 (28%), Positives = 224/465 (48%), Gaps = 23/465 (4%)

Query: 42  THLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDF 101
           T + A   S  A  IC+IL   +   +E+ L    +  +P L+ EVL+   ++   A+  
Sbjct: 55  TQVSANDASQDAERICKILTKFTDSKVETLLNEASVKLSPALIEEVLKKLSNAGVLALSV 114

Query: 102 FRWA--GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCG 159
           F+WA   +G + +   +N +++ LGK  +F+ +W+ V  MK   +LS  TFA I   Y  
Sbjct: 115 FKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAKKLLSKETFALISRRYAR 174

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
           A K  EA+ +F  M   G + +    N +L  + +  N       F    KK  +PD  S
Sbjct: 175 ARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKKRFEPDIKS 234

Query: 220 FAILLEGWEKEGN---VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
           + ILLEGW +E N   V+E N+   +  E FE  P+ V+AY   +    + K+ +EA++F
Sbjct: 235 YTILLEGWGQELNLLRVDEVNREMKD--EGFE--PD-VVAYGIIINAHCKAKKYEEAIRF 289

Query: 277 LRVMKGENCFPTLKFFS---NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
              M+  NC P+   F    N L    KLND   A++ ++     GF L      YNA++
Sbjct: 290 FNEMEQRNCKPSPHIFCSLINGLGSEKKLND---ALEFFERSKSSGFPL--EAPTYNALV 344

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
           G  C +  +++ ++  D+M   G  P++ TY++I   LI+ +R  E  + +  M     +
Sbjct: 345 GAYCWSQRMEDAYKTVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTM---SCE 401

Query: 394 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 453
           PT       + M  + +  ++AI+IW+ +   G+LP     + L+  L +  +L +   +
Sbjct: 402 PTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEY 461

Query: 454 AEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLERRCKT 496
             EML+  I        +LK+   +E R   + D+   ++R  KT
Sbjct: 462 FNEMLDVGIRPPGHMFSRLKQTLLDEGRKDKVTDLVVKMDRLRKT 506


>gi|224111544|ref|XP_002315895.1| predicted protein [Populus trichocarpa]
 gi|222864935|gb|EEF02066.1| predicted protein [Populus trichocarpa]
          Length = 424

 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 118/417 (28%), Positives = 206/417 (49%), Gaps = 10/417 (2%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWA--GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVR 137
           +P LV E L+   ++ + A+ FFRWA   +G + S  +++ +++ LGK  +F  +WN V 
Sbjct: 4   SPSLVFEALKKLSNAGALALSFFRWAEKQKGFQYSTESYHALIESLGKIKQFNVIWNLVT 63

Query: 138 VMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
            MK+ G+L+  TFA I   Y  A K  EAV +F  M   G++ +   VN LL  +C+   
Sbjct: 64  DMKQKGLLNKETFALISRRYARARKVKEAVDAFMKMEKFGLKIESSDVNRLLDTLCKSRQ 123

Query: 198 QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLA 256
                L F    K+    D  S+ ILLEGW +E N+    + + EM  E FE  P+ V+ 
Sbjct: 124 VERAQLVFDKMNKRGFVADIKSYTILLEGWGQEKNLSRLMEVYNEMKDEGFE--PD-VVT 180

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
           Y   +    + ++ D+A++    M+ +NC P+   +   ++ L      + A++ +++  
Sbjct: 181 YGILINAHCKSRRYDDAIELFHEMEAKNCKPSPHIYCTLINGLGAEKRLSEALEFFELSK 240

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
             GF  +P    YNAV+G  C ++ +D+V R  D+M   G  P + TY++I   LI+  +
Sbjct: 241 ASGF--VPEAPTYNAVVGAYCWSERMDDVQRTIDEMRKGGVGPSARTYDIILHHLIRAGK 298

Query: 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 436
                  F +M     QP+       + M  + D  ++AI++W+ +   GILP+    + 
Sbjct: 299 TKIAYSVFQKMSCEGCQPSVSTYEIIVRMFCNEDRVDMAIKVWDQMKAKGILPVMHMFST 358

Query: 437 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERR 493
           L+  L +  +L +   + +EML+  I         LK+   +E +  +D     ER+
Sbjct: 359 LINSLCHESKLDEACMYFQEMLDVGIRPPAQLFSNLKQNLLDEGK--KDTVVVFERK 413



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 55/283 (19%), Positives = 126/283 (44%), Gaps = 9/283 (3%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++ ++++  G+     ++      MK++G    + T+  + +++C + +YD+A+  F  M
Sbjct: 145 SYTILLEGWGQEKNLSRLMEVYNEMKDEGFEPDVVTYGILINAHCKSRRYDDAIELFHEM 204

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEF--LNRVKKIVDPDGDSFAILLEGWEKEG 231
                +       +L++ +   E + S ALEF  L++    V P+  ++  ++  +    
Sbjct: 205 EAKNCKPSPHIYCTLINGLG-AEKRLSEALEFFELSKASGFV-PEAPTYNAVVGAYCWSE 262

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            +++  +T  EM  R          Y+  L  LIR  +   A    + M  E C P++  
Sbjct: 263 RMDDVQRTIDEM--RKGGVGPSARTYDIILHHLIRAGKTKIAYSVFQKMSCEGCQPSVST 320

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           +   + +    +    A+++WD M   G  ++P + M++ +I  LC+   +D    +F +
Sbjct: 321 YEIIVRMFCNEDRVDMAIKVWDQMKAKG--ILPVMHMFSTLINSLCHESKLDEACMYFQE 378

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
           M+  G  P +  ++ + + L+   +   V  F  ++ K    P
Sbjct: 379 MLDVGIRPPAQLFSNLKQNLLDEGKKDTVVVFERKLDKLRKAP 421


>gi|226505250|ref|NP_001147833.1| GTP binding protein [Zea mays]
 gi|195614010|gb|ACG28835.1| GTP binding protein [Zea mays]
 gi|413952711|gb|AFW85360.1| GTP binding protein [Zea mays]
          Length = 547

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 123/468 (26%), Positives = 217/468 (46%), Gaps = 11/468 (2%)

Query: 20  SSSTTTSPTSHNPHRPTRPRFPTHLDAPYI--SSSARIICEILAHASSDDIESALACTGI 77
           +  +T    S  P R T        D P +  S +A+++C I++      I S L   G+
Sbjct: 64  ARQSTDERASAEPLRFTVTPGDAFGDGPPVGMSEAAKMVCRIVSTQPEPKIASTLDALGV 123

Query: 78  IPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYA--WNLMVDVLGKNGRFEQMWNA 135
             +P+LV EVL+   ++   A+ FFRWA R +  S  A  ++ +++ LGK  +F  +W+ 
Sbjct: 124 AVSPELVAEVLKNLSNAGMLALAFFRWAERQEGFSYTAEGFHNLIEALGKIKQFRLVWSL 183

Query: 136 VRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR- 194
           V  M+  G+LS  TF  I   Y  A K  EAV +F+ MS+ G++ ++   N L+  + + 
Sbjct: 184 VETMRCRGLLSKDTFKLIVRRYARARKVKEAVETFEKMSIFGLKTELSDYNWLIDTLSKS 243

Query: 195 -QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH 253
            Q  +     + + R  K V PD  ++ +L+EGW  E ++      + EM++     P+ 
Sbjct: 244 KQVKKAQAIYKEMKRKGKFV-PDLKTYTVLMEGWGHEKDLLMVKTMYQEMIDA-GIRPD- 300

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
           V+AY   +    +  + DEA+K    M+   C P+   +   ++ L        A++ ++
Sbjct: 301 VVAYGMLISAFCKSGKCDEAIKVFYEMEASGCMPSPHVYCMLINGLGSEERLDEALKYFE 360

Query: 314 IMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 373
                GF +   +   NAV+G  C      + F+  D+M      P+S TY++I   LIK
Sbjct: 361 HYKKSGFPM--EVPTCNAVVGAYCRASKFQHAFKMVDEMRKCKVGPNSRTYDVILHYLIK 418

Query: 374 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 433
           +++  E    F  M  +  +P        + M       ++A+++W  + E G+LP    
Sbjct: 419 SQKFEEAYNIFQRMGIDGCEPQLNTYTMMVGMFCSNGRVDMALKVWKQMGEKGVLPCMHM 478

Query: 434 ANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
            + L+ GL    RL +   + +EML++ I         LK+A     R
Sbjct: 479 FSALINGLCFENRLEEACVYFQEMLDKGIRPPGQLFSNLKEALVQGGR 526



 Score = 41.6 bits (96), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 28/124 (22%), Positives = 58/124 (46%), Gaps = 1/124 (0%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +++++  L K+ +FE+ +N  + M  DG    L T+  +   +C  G+ D A+  +  M 
Sbjct: 409 YDVILHYLIKSQKFEEAYNIFQRMGIDGCEPQLNTYTMMVGMFCSNGRVDMALKVWKQMG 468

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             GV   +   ++L++ +C +       + F   + K + P G  F+ L E   + G + 
Sbjct: 469 EKGVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKGIRPPGQLFSNLKEALVQGGRIS 528

Query: 235 EANK 238
            A +
Sbjct: 529 LAQE 532


>gi|242092396|ref|XP_002436688.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
 gi|241914911|gb|EER88055.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
          Length = 551

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 117/437 (26%), Positives = 209/437 (47%), Gaps = 9/437 (2%)

Query: 49  ISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRG 108
           IS +A+++C I++      I S L   G+  +P+LV EVL+   ++   A+ FFRWA R 
Sbjct: 99  ISEAAKMVCRIVSTQPEPRIASTLDALGVAMSPELVAEVLKNLSNAGMLALAFFRWAERQ 158

Query: 109 QRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           +  S  A  ++ +++ LGK  +F+ +W+ V  M+  G+LS  TF  I   Y  A K  EA
Sbjct: 159 EGFSYTAEGFHNLIEALGKIKQFKLVWSLVETMRCRGLLSKDTFKLIVRRYARARKVKEA 218

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICR--QENQTSRALEFLNRVKKIVDPDGDSFAILL 224
           V +F+ MS+ G++ ++   N L+  + +  Q  +     + + R  K V PD  ++ +L+
Sbjct: 219 VETFEKMSIFGLKTELSDYNWLIDTLSKSKQVKKAQAIYKEMKRKGKFV-PDLKTYTVLM 277

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           EGW  E ++      + EM++     P+ V+AY   +    +  + DEA+K    M+   
Sbjct: 278 EGWGHEKDLLMVKTMYQEMIDA-GIRPD-VVAYGMLISAFCKSGKCDEAIKVFYEMEASG 335

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
           C P+   +   ++ L        A++ ++     GF +   +   NAV+G  C     ++
Sbjct: 336 CMPSPHVYCMLINGLGSEERLDEALKYFEQYKKSGFPM--EVPTCNAVVGAYCRASKFEH 393

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
            F+  D+M      P+S TY++I   LIK+++  E    F  M  +  +P        + 
Sbjct: 394 AFKMVDEMRECKIGPNSRTYDVILHYLIKSQKFEEAYNVFQRMGMDGCEPQLNTYTMMVG 453

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 464
           M       ++A+ +W  + E G+LP     + L+ GL    RL +   + +EML++ I  
Sbjct: 454 MFCSNGRVDMALNVWKQMGERGVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKGIRP 513

Query: 465 YEVTMHKLKKAFYNESR 481
                  LK+A     R
Sbjct: 514 PGQLFSNLKEALVEGGR 530


>gi|449454008|ref|XP_004144748.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Cucumis sativus]
 gi|449490811|ref|XP_004158714.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Cucumis sativus]
          Length = 621

 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 118/456 (25%), Positives = 220/456 (48%), Gaps = 13/456 (2%)

Query: 45  DAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRW 104
           D+  ++   ++I E+ A     ++E+ L   G+  + DLV EVL     +   A  FF W
Sbjct: 141 DSTEVNRVCKVIDELFAL--DRNMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCW 198

Query: 105 AGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK 162
           A +  G       +N M+ +LGK  +FE M + +  M E  +L++ TF   F ++  A +
Sbjct: 199 AAQKPGFAHDSKTYNTMMTILGKTRQFETMVSLLEEMAEKELLTMETFTVCFKAFAAAKE 258

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
             +AV   ++M  +  +  V  +N LL ++ R +     AL    ++     P+  ++ +
Sbjct: 259 RKKAVGVLELMKKYKYKVGVETINCLLDSLGRAK-LGKEALTIFEKLHGRFTPNLQTYTV 317

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           LL GW +  N+ EA K + +M++  ++ P+ ++A+ T L  L+R K+  +A+K   VMK 
Sbjct: 318 LLNGWCRVRNLMEAGKIWNQMIDE-DFKPD-IVAHNTMLEGLLRCKKRSDAIKLFEVMKA 375

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
           +   P +K ++  +    K      AVQ ++ M G G    P+  +Y  +I    N   +
Sbjct: 376 KGPSPDVKSYTILVRDFCKQAKMKEAVQYFEEMQGAG--CRPDAAIYTCLITGFGNQKRM 433

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV-HEVEKFFHEMIKNEWQPTPLNCAT 401
           D V+    +M  +G  PD  TYN + + L+ NKR+  +  + + +MI+N  +PT    + 
Sbjct: 434 DTVYGLLKEMKANGCPPDGKTYNALIK-LMTNKRMPDDAVRIYKKMIENGIKPTTHTYSM 492

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461
            +         E+ +  W+ +   G  P + S    + GL +LGR ++  ++ EEM+ + 
Sbjct: 493 MMKSYFQTRNYEMGVAAWDEMKLKGCCPDDNSYTVFIGGLISLGRCAEAGKYLEEMIEKG 552

Query: 462 ILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTS 497
           +   ++  +K    F    R   DI + L ++ K S
Sbjct: 553 MKAPQLDYNKFAADFSRAGRP--DILEELAQKMKFS 586


>gi|357444525|ref|XP_003592540.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481588|gb|AES62791.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 507

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 119/457 (26%), Positives = 223/457 (48%), Gaps = 18/457 (3%)

Query: 16  IIPSSSSTT--TSPTSHNPHRPTRPR----FPTH---LDAPYISSSARIICEILAHASSD 66
           + P S ST+   SPT      P+R      FP H   L  P  +  A  IC IL+     
Sbjct: 13  LFPLSKSTSHFESPTVQFIQNPSRSLKFHIFPFHTSLLHKPN-NPHAETICRILSTTPES 71

Query: 67  DIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYA--WNLMVDVLG 124
            ++ +L    +  +P+LV  VL    ++   A+ FFRWA + Q  +     ++ +++ LG
Sbjct: 72  PVDVSLRNFPVEVSPELVVAVLNKLSNAGILALSFFRWAEKQQGFNHNTEIFHALIEALG 131

Query: 125 KNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVA 184
           K  +F+ +WN V  MK+  +L+  TF+ I   Y  A    EA+ +F+ M  +G++  +  
Sbjct: 132 KIRQFKMIWNLVDEMKQRKLLNGDTFSLIARRYVRAKVIKEALKTFERMEKYGLKPQISD 191

Query: 185 VNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
            N L+  +C+ +    +A E  +++++  ++P+  S+ IL+EGW ++ N+ + ++   EM
Sbjct: 192 FNKLIDVLCKSKFHVEKAQELFDKMRQWNLEPNLKSYTILIEGWSQQQNLLKVDEVCREM 251

Query: 244 VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303
            +   + P+ V+ Y   +    + K+ DEA+     M  +N  P+   +   +  L   +
Sbjct: 252 KDD-GFQPD-VVTYGIIINAYCKAKKYDEAIGIYHDMLSKNVNPSPHIYCTFITGLGNGS 309

Query: 304 DSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLT 363
               A + ++     GF   P    YNAV+   C +  +D+ +R   +M   G  P++ T
Sbjct: 310 RMDEAFEFFEKSKASGFP--PEAPTYNAVVSAYCWSMRIDDAYRIVGEMKELGIGPNART 367

Query: 364 YNMIFECLIKNKRVHEVEKFFHEM-IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 422
           Y++I   LIK  R  E    F  M  +   +P+    A  + M  + ++ ++A+ +WN +
Sbjct: 368 YDIILVHLIKGGRTKEAYSVFQRMSSETGCEPSVSTYAIMVRMFCNENQLDMAMVVWNEM 427

Query: 423 LENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
            + GILP     + L++ L +  +L D  R+ ++ML+
Sbjct: 428 KDKGILPGIHMFSTLIISLCHENKLDDACRYFQQMLD 464



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 117/250 (46%), Gaps = 8/250 (3%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++ ++++   +     ++    R MK+DG    + T+  I ++YC A KYDEA+  +  M
Sbjct: 227 SYTILIEGWSQQQNLLKVDEVCREMKDDGFQPDVVTYGIIINAYCKAKKYDEAIGIYHDM 286

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGN 232
               V        + ++ +    ++   A EF  + K     P+  ++  ++  +     
Sbjct: 287 LSKNVNPSPHIYCTFITGLG-NGSRMDEAFEFFEKSKASGFPPEAPTYNAVVSAYCWSMR 345

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-NCFPTLKF 291
           +++A +  GEM E     P +   Y+  L+ LI+G +  EA    + M  E  C P++  
Sbjct: 346 IDDAYRIVGEMKE-LGIGP-NARTYDIILVHLIKGGRTKEAYSVFQRMSSETGCEPSVST 403

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           ++  + +    N    A+ +W+ M   G  ++P + M++ +I  LC+ + +D+  R+F Q
Sbjct: 404 YAIMVRMFCNENQLDMAMVVWNEMKDKG--ILPGIHMFSTLIISLCHENKLDDACRYFQQ 461

Query: 352 MVFHGAFPDS 361
           M+  G  P +
Sbjct: 462 MLDVGIRPTA 471


>gi|224077524|ref|XP_002305285.1| predicted protein [Populus trichocarpa]
 gi|222848249|gb|EEE85796.1| predicted protein [Populus trichocarpa]
          Length = 523

 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 121/469 (25%), Positives = 220/469 (46%), Gaps = 15/469 (3%)

Query: 13  KNKIIPSSSSTTTSPTSHNPHRPTRPRFPTHLDAPY---ISSSARIICEILAHASSDDIE 69
           K + + S   +  +  SH+   P     P +   P    ++  +RI+ +        D+E
Sbjct: 9   KTRTLHSLFQSLCTSKSHSHRHPLSTLTPLNQIPPLPGLVNEISRILSD--QRNPHHDLE 66

Query: 70  SALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNG 127
           ++L       + +LV +VL+   +   SA  FF WA R  G   S  +++++V++LG + 
Sbjct: 67  TSLNAFSSEISTNLVEQVLKRCKNLGFSAHRFFLWAKRIPGFEHSEESYHILVNILGTSR 126

Query: 128 RFEQMWNAVRVMKE--DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAV 185
           +F  +W+ +  M+E  D  ++      +F SY  A    +A+ +FD M+  G+   V  +
Sbjct: 127 QFAILWDFLIEMRESHDFEINQEIIWLVFRSYSRANLPSDAIRAFDRMAEFGLRPSVDDL 186

Query: 186 NSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245
           + LL  +C+ ++    A +F +RVK   +    +++IL+ GW   G   EA K F EM  
Sbjct: 187 DKLLYVLCKCKHVKC-AQQFFDRVKHKFEAKAKTYSILVRGWGDIGEAVEARKVFDEM-- 243

Query: 246 RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS 305
           R       VLAY + L  L +G  VDEA K  R +      P    ++  +    + N+ 
Sbjct: 244 RGRGCALDVLAYNSLLEALCKGGNVDEAYKMFREIGSHGVEPDACSYAIFIRAYCEANNI 303

Query: 306 THAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYN 365
                + D M    ++L+PN+  YN +I  LC N  V++ ++   +M+  G  PD+ +YN
Sbjct: 304 HSVFSVLDRMKR--YDLVPNVFTYNCIIKKLCKNGKVEDAYQLLHEMMERGVSPDAWSYN 361

Query: 366 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 425
            I     ++  V+   K    M+K+   P   +    + +L+     + A EIW  + E 
Sbjct: 362 TILAYHCEHSEVNRATKLISIMVKDNCLPDRHSYNMLLKLLVRVGRFDRATEIWESMGER 421

Query: 426 GILPLEASANELLVGL-RNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 473
           G  P  ++ + ++ GL +  G+L +  R+ E M++  I  Y  T+  L+
Sbjct: 422 GFYPSVSTYSVMIHGLCKKKGKLEEACRYFETMIDEGIPPYASTIEMLR 470


>gi|224085950|ref|XP_002307751.1| predicted protein [Populus trichocarpa]
 gi|222857200|gb|EEE94747.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 116/460 (25%), Positives = 212/460 (46%), Gaps = 33/460 (7%)

Query: 25  TSPTSHNPHRPTRPRFPTHLDAPYISSSARIIC-EILAHASSDDIESALACTGIIPTPDL 83
           ++P    P  PT       LD   I S+ R I   I+ H     I  + A    IP P +
Sbjct: 22  SNPRKTPPPDPTYTISSLSLDFSQIISTVRSISPSIVRHV----IAQSSAVRHGIPVPQV 77

Query: 84  VHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE 141
           +                FF WA    G R SP A+N MVD  G+   F+  W  + +MK 
Sbjct: 78  LA---------------FFNWASNQDGFRKSPEAYNEMVDFSGQVMMFDVAWYFIDLMKA 122

Query: 142 DGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS 200
             V +++ TF  +   Y  AG   EA+ +F+ M  +  + D +A + L+S +CR E + S
Sbjct: 123 RNVDVTVETFLILMRRYVRAGLAAEAIHAFNRMEDYNCKPDKIAFSILISILCR-ERRAS 181

Query: 201 RALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF 260
           +A EF + +K   +PD   +  L+ GW + GN+ EA + FGEM  +      +V  Y   
Sbjct: 182 QAQEFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFGEM--KVAGIKPNVYTYSIV 239

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF 320
           + +L R  Q+  A      M    C P    +++ + I VK   +   +Q+++ M  +G 
Sbjct: 240 IDSLCRCGQITRAHDIFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQVYNQMKRLGC 299

Query: 321 NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEV 380
              P+ + YN +I   C ++++++  +    M   G  P++ T+N +F C+ K   V+  
Sbjct: 300 E--PDTVTYNFLIETHCKDENLEDAIKVIGLMAKKGCAPNASTFNTLFGCIAKLGDVNAA 357

Query: 381 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 440
            + + +M +   +   +   T + M + +   ++ +++   + EN I P   +   L+  
Sbjct: 358 HRMYKKMKELNCEANTVTYNTLMKMFVASKSTDMVLKLKTEMDENKIEPNVNTYKVLITM 417

Query: 441 LRNLGRLSDVRRFAEEMLNRRIL-----IYEVTMHKLKKA 475
              +G  ++  +F  EM++ + L     +Y++ + +L+KA
Sbjct: 418 YCGMGHWNNAYKFFREMIDEKCLRPSLPVYDMVLQQLRKA 457



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 117/264 (44%), Gaps = 5/264 (1%)

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
           VD   ++F IL+  + + G   EA   F  M E +   P+ + A+   +  L R ++  +
Sbjct: 125 VDVTVETFLILMRRYVRAGLAAEAIHAFNRM-EDYNCKPDKI-AFSILISILCRERRASQ 182

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAV 332
           A +F   +K +   P +  ++N +    +  + + A +++  M   G  + PN+  Y+ V
Sbjct: 183 AQEFFDSLK-DKFEPDVIVYTNLVRGWCRAGNISEAERVFGEMKVAG--IKPNVYTYSIV 239

Query: 333 IGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 392
           I  LC    +      F +M+  G  P+S+TYN +    +K  R  +V + +++M +   
Sbjct: 240 IDSLCRCGQITRAHDIFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQVYNQMKRLGC 299

Query: 393 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 452
           +P  +     I      +  E AI++   + + G  P  ++ N L   +  LG ++   R
Sbjct: 300 EPDTVTYNFLIETHCKDENLEDAIKVIGLMAKKGCAPNASTFNTLFGCIAKLGDVNAAHR 359

Query: 453 FAEEMLNRRILIYEVTMHKLKKAF 476
             ++M         VT + L K F
Sbjct: 360 MYKKMKELNCEANTVTYNTLMKMF 383


>gi|255580124|ref|XP_002530894.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529547|gb|EEF31500.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 519

 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 108/412 (26%), Positives = 199/412 (48%), Gaps = 10/412 (2%)

Query: 67  DIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLG 124
           D+E +L       +  LV +VL+   +   SA  FF WA R  G   S  +++++VD+LG
Sbjct: 60  DLELSLTTYSSHISTTLVEQVLKRCKNLGFSAQRFFLWAKRIPGFDHSKESYHILVDILG 119

Query: 125 KNGRFEQMWNAVRVMKE--DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDV 182
            + +F  +W+ +  ++E  D  +S   F  +F +Y  A    +A+ +FD M   G++  +
Sbjct: 120 SSKQFALLWDFLIEIRESQDFEISPQVFWLVFRAYSRANLPSDAIRAFDRMVEFGLKPTI 179

Query: 183 VAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
             ++ LL  +C++++    A +  +RVK        +++IL+ GW   G    A K F E
Sbjct: 180 DDLDQLLYVLCKRKH-AKHAQQIFDRVKHQFQTRAKTYSILVRGWGDIGESVSACKVFDE 238

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
           M E  +     VLAY + L    +G +V EA K  R M      P    FS  +    + 
Sbjct: 239 MRE--QQCAVDVLAYNSLLEAFCKGGKVSEAYKMFREMGSNGIKPDACTFSIFIRAYCEA 296

Query: 303 NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSL 362
           ND   A ++ D M    ++L+PN+  YN +I  LC  + V+  ++  ++++     PD+ 
Sbjct: 297 NDIHLAYRVLDEMKR--YDLVPNVFTYNCMIKKLCKKEKVEEAYQLLNEIIERSGQPDAW 354

Query: 363 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 422
           +YN I     ++  V+   +    M+K+   P   +    + +L+     + AIE+W  +
Sbjct: 355 SYNAILAYHCEHSEVNSATRLISRMVKDNCLPDKHSYNMLLKLLIRVGRFDRAIEVWESM 414

Query: 423 LENGILPLEASANELLVGL-RNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 473
            E G  P  ++ + ++ GL +  G+L +  ++ E M++  I  Y  T+  L+
Sbjct: 415 GEKGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMIDEGIPPYSSTVEILR 466


>gi|297821162|ref|XP_002878464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324302|gb|EFH54723.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 628

 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 107/446 (23%), Positives = 215/446 (48%), Gaps = 11/446 (2%)

Query: 56  ICEILAH--ASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLS- 112
           +C+++    A   ++E+ L    +  + DL+ +VL+    +   A  FF WA   Q  + 
Sbjct: 143 VCKVIDELFALDRNMEAVLDEMKVELSHDLIVKVLERFRHARKPAFRFFCWAAEKQGFAH 202

Query: 113 -PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
               +N M+ +L K  +FE M + +  M   G+L++ TF     ++  A +  +AV  F+
Sbjct: 203 DSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKERKKAVGIFE 262

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
           +M  +  +  V  +N LL ++ R +     A    +++K+   P+  ++ +LL GW +  
Sbjct: 263 LMKKYKFKIGVETINCLLDSLGRAK-LGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVR 321

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           N+ EA + + +M+++    P+ ++A+   L  L+R ++  +A+K   VMK +   P ++ 
Sbjct: 322 NLIEAARIWNDMIDQ-GLKPD-IVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRS 379

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           ++  +    K +    A++ +D MV  G  L P+  +Y  +I        +D V+    +
Sbjct: 380 YTIMIRDFCKQSSMETAIEYFDDMVDSG--LQPDAAVYTCLITGFGTQKKLDTVYELLKE 437

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M   G  PD  TYN + + +   K      + +++MI+NE +P+       +     A  
Sbjct: 438 MQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARN 497

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK 471
            E+   +W+ +++ GI P + S   L+ GL   G+  +  R+ EEML++ +    +  +K
Sbjct: 498 YEMGSAVWDEMIKKGICPDDNSYTVLIRGLIGEGKSREACRYLEEMLDKGMKTPLIDYNK 557

Query: 472 LKKAFYNESRSMRDIFDSLERRCKTS 497
               F+   +   +IF+ L +R K S
Sbjct: 558 FAADFHKGGQP--EIFEELAQRAKFS 581


>gi|15228767|ref|NP_191806.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181319|sp|Q9LZP3.1|PP293_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g62470, mitochondrial; Flags: Precursor
 gi|7340718|emb|CAB82961.1| putative protein [Arabidopsis thaliana]
 gi|34365579|gb|AAQ65101.1| At3g62470 [Arabidopsis thaliana]
 gi|332646835|gb|AEE80356.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 599

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 108/446 (24%), Positives = 214/446 (47%), Gaps = 11/446 (2%)

Query: 56  ICEILAH--ASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLS- 112
           +C+++    A   ++E+ L    +  + DL+ EVL+    +   A  FF WA   Q  + 
Sbjct: 134 VCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAH 193

Query: 113 -PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
               +N M+ +L K  +FE M + +  M   G+L++ TF     ++  A +  +AV  F+
Sbjct: 194 DSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKERKKAVGIFE 253

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
           +M  +  +  V  +N LL ++ R +     A    +++K+   P+  ++ +LL GW +  
Sbjct: 254 LMKKYKFKIGVETINCLLDSLGRAK-LGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVR 312

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           N+ EA + + +M+++    P+ ++A+   L  L+R ++  +A+K   VMK +   P ++ 
Sbjct: 313 NLIEAARIWNDMIDQ-GLKPD-IVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRS 370

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           ++  +    K +    A++ +D MV  G  L P+  +Y  +I        +D V+    +
Sbjct: 371 YTIMIRDFCKQSSMETAIEYFDDMVDSG--LQPDAAVYTCLITGFGTQKKLDTVYELLKE 428

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M   G  PD  TYN + + +   K      + +++MI+NE +P+       +     A  
Sbjct: 429 MQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARN 488

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK 471
            E+   +W  +++ GI P + S   L+ GL   G+  +  R+ EEML++ +    +  +K
Sbjct: 489 YEMGRAVWEEMIKKGICPDDNSYTVLIRGLIGEGKSREACRYLEEMLDKGMKTPLIDYNK 548

Query: 472 LKKAFYNESRSMRDIFDSLERRCKTS 497
               F+   +   +IF+ L +R K S
Sbjct: 549 FAADFHRGGQP--EIFEELAQRAKFS 572


>gi|356549210|ref|XP_003542990.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Glycine max]
          Length = 648

 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 105/409 (25%), Positives = 192/409 (46%), Gaps = 9/409 (2%)

Query: 56  ICEILAH--ASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRL 111
           +C+++    A   ++E  L   G+  + DLV +VLQ    +   A  FF WAG+  G   
Sbjct: 177 VCKVIDELFALDRNMEVVLDECGVRLSHDLVVDVLQRFKHARKPAFRFFCWAGKRPGFAH 236

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
               +N M+ VLG+  +FE M   +  M E G+L++ TF+    ++  A +  +AV  FD
Sbjct: 237 DSRTYNFMMCVLGRTRQFETMVAMLEEMGEKGLLTMETFSIAIKAFAEAKQRKKAVGIFD 296

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
           +M  +G +  V  +N LL ++         A     ++K    P   ++ ILL GW +  
Sbjct: 297 LMKKYGFKVGVDVINFLLDSL-STAKLGKEAQAVFEKLKDRFTPSLQTYTILLSGWCRLK 355

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           N+ EA + + EM++R  +NP+ V+A+   L  L++ K+  +A+K   +MK +   P ++ 
Sbjct: 356 NLLEAGRVWNEMIDR-GFNPD-VVAHNVMLEGLLKCKKKSDAIKLFEIMKAKGPSPNVRS 413

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           ++  +    K      A++ +D+MV  G    P+  +Y  +I        +D V+    +
Sbjct: 414 YTIMIQDFCKQKLMGEAIEYFDVMVDRG--CQPDAALYTCLITGFGRQKKMDMVYSLLKE 471

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M   G  PD  TYN + + +       +  + + +MI++  +PT       +        
Sbjct: 472 MRERGCPPDGRTYNALIKLMTSQHMPDDAVRIYKKMIQSGIKPTIHTYNMIMKSYFVTKN 531

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
            E+  EIW+ + + G  P + S    + GL    R  +  ++ EEML +
Sbjct: 532 YEMGHEIWDEMHQKGCCPDDNSYIVYIGGLIRQDRSGEACKYLEEMLEK 580


>gi|15241508|ref|NP_196986.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173968|sp|Q9LEQ7.1|PP382_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g14820, mitochondrial; Flags: Precursor
 gi|9755750|emb|CAC01881.1| putative protein [Arabidopsis thaliana]
 gi|332004697|gb|AED92080.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 108/446 (24%), Positives = 214/446 (47%), Gaps = 11/446 (2%)

Query: 56  ICEILAH--ASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLS- 112
           +C+++    A   ++E+ L    +  + DL+ EVL+    +   A  FF WA   Q  + 
Sbjct: 133 VCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAH 192

Query: 113 -PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
               +N M+ +L K  +FE M + +  M   G+L++ TF     ++  A +  +AV  F+
Sbjct: 193 DSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKERKKAVGIFE 252

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
           +M  +  +  V  +N LL ++ R +     A    +++K+   P+  ++ +LL GW +  
Sbjct: 253 LMKKYKFKIGVETINCLLDSLGRAK-LGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVR 311

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           N+ EA + + +M++     P+ ++A+   L  L+R  +  +A+K   VMK +   P ++ 
Sbjct: 312 NLIEAARIWNDMIDH-GLKPD-IVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRS 369

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           ++  +    K +    A++ +D MV  G  L P+  +Y  +I        +D V+    +
Sbjct: 370 YTIMIRDFCKQSSMETAIEYFDDMVDSG--LQPDAAVYTCLITGFGTQKKLDTVYELLKE 427

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M   G  PD  TYN + + +   K      + +++MI+NE +P+       +     A  
Sbjct: 428 MQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARN 487

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK 471
            E+   +W+ +++ GI P + S   L+ GL + G+  +  R+ EEML++ +    +  +K
Sbjct: 488 YEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTPLIDYNK 547

Query: 472 LKKAFYNESRSMRDIFDSLERRCKTS 497
               F+   +   +IF+ L +R K S
Sbjct: 548 FAADFHRGGQP--EIFEELAQRAKFS 571


>gi|15228788|ref|NP_191813.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122214682|sp|Q3EAF8.1|PP294_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g62540, mitochondrial; Flags: Precursor
 gi|332646841|gb|AEE80362.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 599

 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 108/446 (24%), Positives = 214/446 (47%), Gaps = 11/446 (2%)

Query: 56  ICEILAH--ASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLS- 112
           +C+++    A   ++E+ L    +  + DL+ EVL+    +   A  FF WA   Q  + 
Sbjct: 134 VCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAH 193

Query: 113 -PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
               +N M+ +L K  +FE M + +  M   G+L++ TF     ++  A +  +AV  F+
Sbjct: 194 ASRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKERKKAVGIFE 253

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
           +M  +  +  V  +N LL ++ R +     A    +++K+   P+  ++ +LL GW +  
Sbjct: 254 LMKKYKFKIGVETINCLLDSLGRAK-LGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVR 312

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           N+ EA + + +M++     P+ ++A+   L  L+R  +  +A+K   VMK +   P ++ 
Sbjct: 313 NLIEAARIWNDMIDH-GLKPD-IVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRS 370

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           ++  +    K +    A++ +D MV  G  L P+  +Y  +I        +D V+    +
Sbjct: 371 YTIMIRDFCKQSSMETAIEYFDDMVDSG--LQPDAAVYTCLITGFGTQKKLDTVYELLKE 428

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M   G  PD  TYN + + +   K      + +++MI+NE +P+       +     A  
Sbjct: 429 MQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARN 488

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK 471
            E+   +W+ +++ GI P + S   L+ GL + G+  +  R+ EEML++ +    +  +K
Sbjct: 489 YEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTPLIDYNK 548

Query: 472 LKKAFYNESRSMRDIFDSLERRCKTS 497
               F+   +   +IF+ L +R K S
Sbjct: 549 FAADFHRGGQP--EIFEELAQRAKFS 572


>gi|449469288|ref|XP_004152353.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Cucumis sativus]
          Length = 529

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/412 (25%), Positives = 197/412 (47%), Gaps = 10/412 (2%)

Query: 67  DIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLG 124
           D+E  L+      + DLV +VL+   +   SA  FF WA R  G   S  +++++VD+LG
Sbjct: 67  DLEVGLSSFSSNVSTDLVEQVLKRCKNIAFSAHRFFLWAKRIPGFEPSDDSYHIVVDILG 126

Query: 125 KNGRFEQMWNAVRVMKE--DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDV 182
            +G+F  +W+ +  ++E    V++   F  +F +Y  A    +A+ +F+ M   G+   V
Sbjct: 127 SSGQFAILWDFLIEIRETRSSVITHELFWHVFTAYSRADLPQDAIRAFNRMGEFGIRAGV 186

Query: 183 VAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
             ++ LL  +C++++  + A +F ++VK + +P   +++IL  GW   G+   A K F E
Sbjct: 187 DDLDKLLYTLCKRKH-VAHAQQFFDKVKSVFNPSVKTYSILTRGWGVVGDSNNAQKVFDE 245

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
           M ER       VLAY + L  L +G + DEA K    M      P    +S  +    + 
Sbjct: 246 MRER--GCLIDVLAYNSLLEALCKGGKRDEAYKMFLEMDSNGVDPDADTYSIFIRSSCQE 303

Query: 303 NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSL 362
           ND     ++ +       NL+PN+  YN VI  LC + +V+  ++  D+M+  G  PD+ 
Sbjct: 304 NDLHTVYRVLERTKRK--NLLPNVFTYNCVIKKLCKDQNVEEAYQILDEMIERGVTPDTW 361

Query: 363 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 422
           +YN I      +  V+        M +++  P        + +L+     + A E+W  +
Sbjct: 362 SYNAIQAYHCDHSEVNSALNLVKRMDRDKCVPDKHTYNMVLKLLVRVGRFDRANEVWESM 421

Query: 423 LENGILPLEASANELLVGL-RNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 473
            + G  P  ++   ++ G  +   +L +  ++ E M++  I  Y  T+  L+
Sbjct: 422 GKRGFYPSVSTYAVMIHGFCKKKWKLEEACKYFEMMIDEGIPPYIATVELLR 473


>gi|255548471|ref|XP_002515292.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545772|gb|EEF47276.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 116/463 (25%), Positives = 217/463 (46%), Gaps = 18/463 (3%)

Query: 45  DAPYISSSAR-----IICEILAH--ASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSS 97
           D   I+SSA       +C+++    A   ++E+ L   GI  + DLV +VL+    +   
Sbjct: 52  DGEKINSSADPVEVDRVCKVIDELFALDRNMEAVLDECGINLSHDLVIDVLERFCHARKP 111

Query: 98  AVDFFRWAGRGQRLS--PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFD 155
           A  FF WAG  Q        +N M+ +L K  +FE + + +  M   GVL++ TF+    
Sbjct: 112 AFRFFCWAGEKQGFEHDSRTYNSMMSILAKTRQFETVVSMLEEMGGKGVLTMDTFSIAMR 171

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE-NQTSRALEFLNRVKKIVD 214
           ++  A +  +AV  F++M  +  +  V  +N LL ++ R +  + ++AL     +K    
Sbjct: 172 AFAAAKERKKAVAMFELMKKYNYKVGVETINHLLDSLGRAKLGKEAQAL--FENLKGRFT 229

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           P+  ++ +LL GW K  N+ EA   + EM+++  + P+ ++A+   L  L+R KQ  +A+
Sbjct: 230 PNLRTYTVLLNGWCKVKNLMEAGSVWNEMIDK-GFKPD-IVAHNIMLEGLLRSKQRSDAI 287

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
           K   VMK +   P ++ ++  +  L + +    AV+ +  M+  G    P+  +Y  +I 
Sbjct: 288 KLFMVMKAKGPSPDVRSYTILIRYLCRQSKMEEAVEYFQEMIDSGCK--PDAAVYTCLIT 345

Query: 335 LLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
              N   +D V+    +M   G  PD LTYN + + + + K   +  + + +M ++  +P
Sbjct: 346 GFGNRKRMDMVYDLLKEMKEEGCPPDGLTYNALIKLMTRLKMPDDAARIYKKMTQSGIEP 405

Query: 395 TPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 454
           T       +         E+   +W+ +   G  P + S   L+ GL + GR  +  ++ 
Sbjct: 406 TIHTYNMIMKSYFQTRNYEMGRAVWDEMSRKGFCPDDNSYTVLIGGLISQGRSGEACKYL 465

Query: 455 EEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTS 497
           EEML + +   ++  +K             DI + L +R K S
Sbjct: 466 EEMLEKGMKAPQLDYNKFGADLSRGGNP--DILEELAQRLKFS 506


>gi|449484422|ref|XP_004156879.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Cucumis sativus]
          Length = 529

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/412 (25%), Positives = 197/412 (47%), Gaps = 10/412 (2%)

Query: 67  DIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLG 124
           D+E  L+      + DLV +VL+   +   SA  FF WA R  G   S  +++++VD+LG
Sbjct: 67  DLEVGLSSFSSNVSTDLVEQVLKRCKNIAFSAHRFFLWAKRIPGFEPSDDSYHIVVDILG 126

Query: 125 KNGRFEQMWNAVRVMKE--DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDV 182
            +G+F  +W+ +  ++E    V++   F  +F +Y  A    +A+ +F+ M   G+   V
Sbjct: 127 GSGQFAILWDFLIEIRETRSSVITHELFWHVFTAYSRADLPQDAIRAFNRMGEFGIRAGV 186

Query: 183 VAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
             ++ LL  +C++++  + A +F ++VK + +P   +++IL  GW   G+   A K F E
Sbjct: 187 DDLDKLLYTLCKRKH-VAHAQQFFDKVKSVFNPSVKTYSILTRGWGVVGDSNNAQKVFDE 245

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
           M ER       VLAY + L  L +G + DEA K    M      P    +S  +    + 
Sbjct: 246 MRER--GCLIDVLAYNSLLEALCKGGKRDEAYKMFLEMDSNGVDPDADTYSIFIRSSCQE 303

Query: 303 NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSL 362
           ND     ++ +       NL+PN+  YN VI  LC + +V+  ++  D+M+  G  PD+ 
Sbjct: 304 NDLHTVYRVLERTKRK--NLLPNVFTYNCVIKKLCKDQNVEEAYQILDEMIERGVTPDTW 361

Query: 363 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 422
           +YN I      +  V+        M +++  P        + +L+     + A E+W  +
Sbjct: 362 SYNAIQAYHCDHSEVNSALNLVKRMDRDKCVPDKHTYNMVLKLLVRVGRFDRANEVWESM 421

Query: 423 LENGILPLEASANELLVGL-RNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 473
            + G  P  ++   ++ G  +   +L +  ++ E M++  I  Y  T+  L+
Sbjct: 422 GKRGFYPSVSTYAVMIHGFCKKKWKLEEACKYFEMMIDEGIPPYIATVELLR 473


>gi|297743427|emb|CBI36294.3| unnamed protein product [Vitis vinifera]
          Length = 517

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 120/458 (26%), Positives = 201/458 (43%), Gaps = 39/458 (8%)

Query: 23  TTTSPTSHNPH---RPTRPRFPTHLDAP-YISSSARIICEILAHASSDDIESALACTGII 78
           + +SP +H+       T  + P  L +  YI+  +RI+ +        D+E  L      
Sbjct: 20  SLSSPKTHHSRLFSSQTILQDPNSLSSSQYINEISRILSDF--RDPHHDLERPLTAFSQK 77

Query: 79  PTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRV 138
            TP LV +VL+   +   SA           +  P  W+ + D                 
Sbjct: 78  ITPGLVEQVLKRCKNLGFSA--------HSSKQFPLIWDFLSD----------------- 112

Query: 139 MKEDGVLSL--PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
           M+E     +    F  IF +YC A    +A+ +F  M   GV+  V  V+ LL  +C+++
Sbjct: 113 MRETRCCEICPEIFWLIFRAYCRANLPGDAIRAFHQMGDFGVKAGVGDVDQLLYVLCKRK 172

Query: 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
           +   +A EF ++V   V P+  +++IL+ GW   G+  EA K F EM ER       V+A
Sbjct: 173 H-VKQAQEFFDKVNVEVMPNAKTYSILMRGWGDVGDSSEARKLFEEMRER--GCAVDVVA 229

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
           Y + L  L +G  VDEA K  R M      P    +S  +    ++ND   A Q+ D M 
Sbjct: 230 YNSLLEALCKGGNVDEAYKLFREMGSNGLAPDACSYSIFIRAYCEVNDIHSAFQVLDRMR 289

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
              +NL+PN+  YN ++  LC ++ VD  ++  D+M+  G  PD  +YN I      +  
Sbjct: 290 R--YNLVPNVFTYNCIVKKLCKSEKVDEAYQLLDEMIERGVSPDLWSYNAIQAFHCDHCE 347

Query: 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 436
           V++  +    M K    P        + MLL     +   ++W  + E G  P  ++   
Sbjct: 348 VNKALRLISRMEKENCMPDRHTYNMVLKMLLRVGRFDRVTDVWGGMEERGFYPAASTYAV 407

Query: 437 LLVGL-RNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 473
           ++ G  +  G+L +  ++ E M++  I  Y  T+  L+
Sbjct: 408 MVHGFCKKKGKLEEACKYFEMMIDDGIPPYSCTVELLR 445


>gi|302794977|ref|XP_002979252.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
 gi|300153020|gb|EFJ19660.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
          Length = 702

 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 109/428 (25%), Positives = 216/428 (50%), Gaps = 24/428 (5%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVR 137
           TP++   VLQ   D P  A  FF+WAG   G + + Y   ++++   K  R E+   A R
Sbjct: 42  TPEVAGRVLQQVED-PDVAWTFFQWAGNKPGFQHNAYTCAVLLNAFVKAKRHEE---AHR 97

Query: 138 VMKED-GVLSLPT---FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC 193
           ++KE+   L  P    + ++ + +C AG+ D+A    D M   GV+ DV+  ++L+  +C
Sbjct: 98  LLKEELEPLCFPNEIMYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLC 157

Query: 194 RQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN--- 250
           R+  +   ALE    + +   P+  ++  ++ G  K   ++EA + F +M +R+E +   
Sbjct: 158 RK-GRIDEALEQFKSMGEECSPNVITYNTVVNGLCKANRIDEALELFDDMEKRYEASHGC 216

Query: 251 -PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV 309
            P+ V++Y T +  L + ++VD+A ++ + M+   C P +  +S+ +D L K++  +  +
Sbjct: 217 EPD-VISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRPSECL 275

Query: 310 QLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFE 369
           +L   M   GF +  N+I +NA++  L  ND+ +   +FF++++  G  P+ +TYN+   
Sbjct: 276 ELLLHMKEKGFGI--NIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVH 333

Query: 370 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
            L K  RV E  +   EM++++  P  +  ++ I     A   + A +++  ++ +  +P
Sbjct: 334 GLCKAGRVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIP 393

Query: 430 LEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL----IYEVTMHKLKKAFYNESRSMRD 485
              +   LL G     +  +  R  E+M+N   +     Y V M  +  A  +   S  +
Sbjct: 394 HPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGA--DSVESALE 451

Query: 486 IFDSLERR 493
           I+  ++R+
Sbjct: 452 IYHKMKRK 459



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 148/328 (45%), Gaps = 7/328 (2%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           A  G      +++ ++D L K  R ++ +   + M+  G   ++ T++S+ D  C   + 
Sbjct: 212 ASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRP 271

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAI 222
            E +     M   G   +++  N++L A+ + + Q  +A +F  R+ K    P+  ++ +
Sbjct: 272 SECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQ-EKACQFFERLLKSGKKPNVVTYNV 330

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
            + G  K G V+EA +   EMVE  +  P+ V+ Y + +    +  ++D+A      M  
Sbjct: 331 AVHGLCKAGRVDEAYRILLEMVES-KVTPD-VITYSSIIDGFCKAGRMDKADDVFTRMMV 388

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
             C P    F   L    +   S  A ++ + MV  GF  +P L  YN ++  +C  D V
Sbjct: 389 HECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGF--IPGLQTYNVLMDCVCGADSV 446

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
           ++    + +M      PD  TY  + +CL + +RV E ++F   M  +   P    C   
Sbjct: 447 ESALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHAL 506

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPL 430
           + +L    E + A  + + ++E G  PL
Sbjct: 507 VEVLCKQGEVDEACSVLDNVVEVGCQPL 534



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 92/389 (23%), Positives = 155/389 (39%), Gaps = 42/389 (10%)

Query: 93  DSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTF 150
           D    A  FF R    G++ +   +N+ V  L K GR ++ +  +  M E  V   + T+
Sbjct: 304 DEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKVTPDVITY 363

Query: 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK 210
           +SI D +C AG+ D+A   F  M +H      V   +LL      E++ SR  E     +
Sbjct: 364 SSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGF--SEHKKSR--EAFRVHE 419

Query: 211 KIVD----PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
            +V+    P   ++ +L++      +VE A + + +M +R +  P+    Y   +  L R
Sbjct: 420 DMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKM-KRKKRQPD-CNTYAPLIQCLCR 477

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG------- 319
            ++VDEA +FL VM+ +N  P        +++L K  +   A  + D +V +G       
Sbjct: 478 ARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEVGCQPLGET 537

Query: 320 FNLM-------------------PNLI----MYNAVIGLLCNNDDVDNVFRFFDQMVFHG 356
           F ++                   P  +     Y+  +  +C     D      +QMV  G
Sbjct: 538 FKILVEELYLRKKWEAASKLLRSPGFVADAATYSLCVAEICKAGKPDEAVEVIEQMVLKG 597

Query: 357 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 416
             PD  TY  +   L    RV      F +M      P  +     I     AD  + A 
Sbjct: 598 VRPDEGTYVAVLRSLCGLDRVESAIAEFEKMASRGCAPGLVTYTLLIGEACSADMADEAF 657

Query: 417 EIWNYILENGILPLEASANELLVGLRNLG 445
            I+  ++  G  P   +   L   LR+ G
Sbjct: 658 RIFEAMVAAGFTPQAQTMRTLSSCLRDAG 686



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/382 (20%), Positives = 159/382 (41%), Gaps = 42/382 (10%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           RG ++     + ++  L + GR ++     + M E+   ++ T+ ++ +  C A + DEA
Sbjct: 140 RGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMGEECSPNVITYNTVVNGLCKANRIDEA 199

Query: 167 VMSFDVM-----SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSF 220
           +  FD M     + HG E DV++ ++++ A+C+ + +  +A E+  R++ +   P+  ++
Sbjct: 200 LELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQ-RVDKAYEYFKRMRAVGCAPNVVTY 258

Query: 221 AILLEGWEKEGNVEEA--------NKTFG-----------------------EMVERF-- 247
           + L++G  K     E          K FG                       +  ER   
Sbjct: 259 SSLIDGLCKVDRPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLK 318

Query: 248 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 307
                +V+ Y   +  L +  +VDEA + L  M      P +  +S+ +D   K      
Sbjct: 319 SGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDK 378

Query: 308 AVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMI 367
           A  ++  M  +    +P+ + +  ++     +      FR  + MV  G  P   TYN++
Sbjct: 379 ADDVFTRM--MVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVL 436

Query: 368 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 427
            +C+     V    + +H+M + + QP     A  I  L  A   + A E  + +  + +
Sbjct: 437 MDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFLDVMEADNV 496

Query: 428 LPLEASANELLVGLRNLGRLSD 449
           +P  A  + L+  L   G + +
Sbjct: 497 VPNGAICHALVEVLCKQGEVDE 518


>gi|147862837|emb|CAN78368.1| hypothetical protein VITISV_028672 [Vitis vinifera]
          Length = 927

 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 114/454 (25%), Positives = 213/454 (46%), Gaps = 13/454 (2%)

Query: 45  DAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRW 104
           D   +S   R+I E+ A     ++E+ L    +  +  LV  VL+    +   A  FF W
Sbjct: 201 DPEEVSRVCRVIDELFA--LDRNMEAVLDECNVDLSHALVVGVLERFKHARKPAFRFFCW 258

Query: 105 AGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK 162
           AG+  G   +   +N M+ VLG+  +FE M   +  M E G+L++ TF+    ++  A +
Sbjct: 259 AGQKAGFTHNSRTYNAMMSVLGRTRQFESMMGMLGEMGEKGLLTMETFSIAIKAFAAAKE 318

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE-NQTSRALEFLNRVKKIVDPDGDSFA 221
             +AV  F++M  +  +  V  +N LL  + R +  + ++AL    +++    P+  ++ 
Sbjct: 319 RKKAVGVFELMKRYNFDAGVDTINCLLDNLGRAKLGKEAQAL--FEKLEDRFTPNLRTYT 376

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           +LL GW +  N+ EA +T+ EM+++  + P+ ++A+ T L  L++ K+  +A+K   VMK
Sbjct: 377 VLLNGWCRIKNLVEAGRTWNEMIDK-GFKPD-IIAHHTMLEGLLKCKKKSDAIKLFEVMK 434

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
            +   P ++ ++  +  L K      AV+ +D MV  G    P+  +Y  +I    N   
Sbjct: 435 AKGPSPNVRTYTILIRDLCKQMKMKEAVEYFDEMVDSG--CQPDAAVYTCLITGFGNQKK 492

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
           +D V+    +M   G   D  TYN + + +   +   +  + + +MI+N  QPT      
Sbjct: 493 MDKVYALLKEMKEKGCPADGRTYNALIKLMTNRQMPDDAVRIYKKMIQNGIQPTLHTYNM 552

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461
            +         E+   +W  +   G  P + S    + GL   GR  +  R+ EEM+ + 
Sbjct: 553 MMKSYFYTRNYEMGCAVWKEMGRKGCCPDDNSYIVFIGGLIRHGRSEEACRYLEEMIEKG 612

Query: 462 ILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCK 495
           +   ++  +K    F    +   DI + L R+ K
Sbjct: 613 MKAPQLDYNKFAADFSRAGKP--DILEELARKMK 644


>gi|242064598|ref|XP_002453588.1| hypothetical protein SORBIDRAFT_04g008550 [Sorghum bicolor]
 gi|241933419|gb|EES06564.1| hypothetical protein SORBIDRAFT_04g008550 [Sorghum bicolor]
          Length = 365

 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 115/364 (31%), Positives = 183/364 (50%), Gaps = 21/364 (5%)

Query: 18  PSSSSTTTS-PTSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTG 76
           PS S+ T + P +     P+ P FPT+ +A  +    RI  +ILA  + DD+++ L  T 
Sbjct: 10  PSDSAATVALPAAKLARDPSSPAFPTNKEATDLPPKTRIFYDILASRTDDDVDATLDKTD 69

Query: 77  I--IPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQ----RLSPYAWNLMVDVLGKNGRFE 130
           I  + T D V +V       P +A  FF WAG         SP +WNL+VD+L  N  F 
Sbjct: 70  IRGVTTVD-VEQV------HPHAATAFFHWAGHRHLDHDNHSPNSWNLIVDILSTNCLFT 122

Query: 131 QMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS 190
           +MW  V  +    +L L TFAS+F S   +          D M  + + +D +A+NSLLS
Sbjct: 123 RMWETVDSIHSRRLLLLDTFASVFSSLAASPGCCLLKAFMDDMLRYDMTRDTLALNSLLS 182

Query: 191 AICRQEN-QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW 249
           A+CR +    + A   + R +     D DS+ ILLE +E   +   A   F +MV     
Sbjct: 183 ALCRGDRLDDAHATILVARAEAGTLLDADSYTILLECYEATPDTRAARNVFDKMVRDIGV 242

Query: 250 NPEHVLAYETFLITLIRGKQ---VDEALKFLRVMKGENCFPTL--KFFSNALDILVKLND 304
           + ++V AY+ FL TL+       + +A+ +L  +    C P +  +FF  AL + +++ +
Sbjct: 243 DLDNVPAYDAFLTTLVSSNSSMALPKAMYYLDFLNRRGCSPGVGERFFRAALAVHLEVGE 302

Query: 305 STHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTY 364
              A  LWD  VG    L+ ++ MYN +I L  +    + +  + D M+F+G FP++ TY
Sbjct: 303 LRGATYLWDKFVG-RRGLVRDMEMYNRMIMLQGSLGHGEVIVDYLDDMIFNGLFPNTNTY 361

Query: 365 NMIF 368
           N++ 
Sbjct: 362 NVVL 365


>gi|225432738|ref|XP_002279088.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial [Vitis vinifera]
          Length = 535

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 115/446 (25%), Positives = 213/446 (47%), Gaps = 12/446 (2%)

Query: 29  SHNPHRPTRPRFPTHLDAPYISSSARIICEILA--HASSDDIESALACTGIIPTPDLVHE 86
           + N     R +   ++    I S    I E+L   H+S+D +  AL   G+  +  LV +
Sbjct: 65  AENQKHDHRSKVDGYVLKETIDSDIDKISELLKFRHSSADAVVQALGGCGVSVSESLVEQ 124

Query: 87  VLQLSYDSPSSAVDFFRWAG--RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM-KEDG 143
           VL+   +    A  FF+WA    G R S  ++N MVD+LGK  +F+ MW  V  M +  G
Sbjct: 125 VLKRFSNDWIPAFGFFKWAKAQTGYRHSMNSYNSMVDILGKLKKFDLMWELVEEMDRLGG 184

Query: 144 VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRAL 203
            +SL T   +      A ++ +A+ +F  M   GV++D +A+N+L+ A+ + EN    A 
Sbjct: 185 YVSLATMTKVMRRLARASRWKDAIEAFRGMERFGVKKDTLAMNTLMDALVK-ENSVEHAN 243

Query: 204 EFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT 263
           +     K  +  +  +F +L+ GW K   ++ A K+  EM E   + P+ V++Y + +  
Sbjct: 244 DVFVEFKDSILLNPHTFNVLIHGWCKARKMDNALKSMAEMKEH-GFCPD-VISYTSIVEA 301

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLM 323
             R K   +    L  M+ + C P +  ++  +  L K  + + A+++++ M G   + +
Sbjct: 302 YCREKDFRKVNSVLNEMEEKGCPPNVVTYTIVMHALGKGKEISKALEVYEKMKGS--SCV 359

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           P+   Y+++I +L     + +    F+ M   GA PD LTYN +      + +  +  K 
Sbjct: 360 PDTSFYSSLIYILSKAGRLKDARDVFEDMTKQGAIPDVLTYNTMISAACMHSQEEDALKL 419

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV-GLR 442
             +M ++  +P     +  + M    +  ++   + N++ +N I  LE     LLV GL 
Sbjct: 420 LLKMEESSCKPDLNTYSPLLKMCCRNNRMKVLSALLNHMFKNDI-SLEVGTYSLLVHGLC 478

Query: 443 NLGRLSDVRRFAEEMLNRRILIYEVT 468
             G+L     F EEM+++ ++  + T
Sbjct: 479 KSGKLEHACLFFEEMVSKGLVPKDCT 504


>gi|15219049|ref|NP_175673.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207559|sp|Q9SSR6.1|PPR78_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g52640, mitochondrial; Flags: Precursor
 gi|5903042|gb|AAD55601.1|AC008016_11 Contains 2 PF|01535 DUF domains [Arabidopsis thaliana]
 gi|45773940|gb|AAS76774.1| At1g52640 [Arabidopsis thaliana]
 gi|62320530|dbj|BAD95108.1| hypothetical protein [Arabidopsis thaliana]
 gi|332194712|gb|AEE32833.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 109/414 (26%), Positives = 189/414 (45%), Gaps = 11/414 (2%)

Query: 66  DDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVL 123
           DD+E  L       + +LV +VL+   +    A  FF WA R      S  +++++V++L
Sbjct: 53  DDLEHTLVAYSPRVSSNLVEQVLKRCKNLGFPAHRFFLWARRIPDFAHSLESYHILVEIL 112

Query: 124 GKNGRFEQMWNAVRVMKEDGVLSLPT--FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD 181
           G + +F  +W+ +   +E     + +  F  +F +Y  A    EA  +F+ M   G++  
Sbjct: 113 GSSKQFALLWDFLIEAREYNYFEISSKVFWIVFRAYSRANLPSEACRAFNRMVEFGIKPC 172

Query: 182 VVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTF 240
           V  ++ LL ++C  +   + A EF  + K   + P   +++IL+ GW +  +   A K F
Sbjct: 173 VDDLDQLLHSLC-DKKHVNHAQEFFGKAKGFGIVPSAKTYSILVRGWARIRDASGARKVF 231

Query: 241 GEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV 300
            EM+ER       +LAY   L  L +   VD   K  + M      P    F+  +    
Sbjct: 232 DEMLERN--CVVDLLAYNALLDALCKSGDVDGGYKMFQEMGNLGLKPDAYSFAIFIHAYC 289

Query: 301 KLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPD 360
              D   A ++ D M    ++L+PN+  +N +I  LC N+ VD+ +   D+M+  GA PD
Sbjct: 290 DAGDVHSAYKVLDRMKR--YDLVPNVYTFNHIIKTLCKNEKVDDAYLLLDEMIQKGANPD 347

Query: 361 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 420
           + TYN I      +  V+   K    M + +  P        + +L+     + A EIW 
Sbjct: 348 TWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMVLKLLIRIGRFDRATEIWE 407

Query: 421 YILENGILPLEASANELLVGL-RNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 473
            + E    P  A+   ++ GL R  G+L +  R+ E M++  I  Y  T+  L+
Sbjct: 408 GMSERKFYPTVATYTVMIHGLVRKKGKLEEACRYFEMMIDEGIPPYSTTVEMLR 461


>gi|297853022|ref|XP_002894392.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297340234|gb|EFH70651.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 525

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 110/414 (26%), Positives = 193/414 (46%), Gaps = 11/414 (2%)

Query: 66  DDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVL 123
           DD+E  LA      + +LV +VL+   +    A  FF WA R      S  +++++V++L
Sbjct: 53  DDLEHTLAAYSPRVSSNLVEQVLKRCKNLGFPAHRFFLWAKRIPDFEHSLESYHILVEIL 112

Query: 124 GKNGRFEQMWNAVRVMKEDGVLSLPT--FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD 181
           G + +F  +W+ +   +E     + +  F  +F +Y  A    EA  +F+ M   G++  
Sbjct: 113 GCSKQFALLWDFLIEAREYNYFEITSKVFWIVFRAYSRANLPSEASRAFNRMVEFGIKPC 172

Query: 182 VVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTF 240
           V  ++ LL ++C +++  + A EF ++ K   + P   +++IL+ GW +  +   A K F
Sbjct: 173 VDDLDQLLHSLCDRKH-VNHAQEFFDKAKGFGIVPSAKTYSILVRGWARIRDASGARKVF 231

Query: 241 GEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV 300
            EM+E        +LAY   L  L +   VD A K  + M      P    F+  +    
Sbjct: 232 DEMLENN--CVVDLLAYNALLDALCKSGDVDGAYKMFQEMGNLGLKPDAYSFAIFIHSYC 289

Query: 301 KLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPD 360
             +D   A Q+ D M    ++L+PN+  +N +I  LC N+ VD+ +   D+M+  GA PD
Sbjct: 290 DASDVHSAYQVLDRMKR--YDLVPNVYTFNHIIKTLCKNEKVDDAYLLLDEMIQKGANPD 347

Query: 361 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 420
           + TYN I      +  V+   K    M + +  P        + +L+     +   EIW 
Sbjct: 348 TWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMVLKLLIRIGRFDRVTEIWE 407

Query: 421 YILENGILPLEASANELLVGL-RNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 473
            + E    P  A+   ++ GL R  G+L +  R+ E M++  I  Y  T+  L+
Sbjct: 408 GMSERKFYPTVATYTVMIHGLVRKKGKLEEACRYFEMMIDEGIPPYSTTVEMLR 461


>gi|255565671|ref|XP_002523825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536913|gb|EEF38551.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 528

 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 98/386 (25%), Positives = 182/386 (47%), Gaps = 13/386 (3%)

Query: 98  AVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIF 154
           A+ FF WA    G    P  +N M+D+ GK   F+  W  + +MK   V +S+ TF+ + 
Sbjct: 125 ALSFFNWATSRPGFTHHPEPYNEMIDLAGKVRNFDLGWQVIDLMKARNVEISIETFSILI 184

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD 214
             Y  AG   EAV +F+ M  +  + D +A + L+S +CR+   T  A  F + +K   +
Sbjct: 185 RRYVRAGLASEAVHAFNRMEDYNCKPDKIAFSILISILCRKRRATE-AQSFFDSLKDKFE 243

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           PD   +  L+ GW + GN+ EA + F EM  +      +V  Y   +  L R  Q+  A 
Sbjct: 244 PDVIVYTNLVRGWCRAGNIPEAERVFTEM--KVAGCMPNVYTYTIVIDALCRCGQITRAH 301

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
                M    C P    F+N L + VK   +   +Q+++ M  +G    P+ + YN +I 
Sbjct: 302 DVFAEMLDVGCEPNSITFNNLLRVHVKAGRTEKVLQVYNQMKRMG--CPPDTVTYNFLIE 359

Query: 335 LLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
             C + ++D   +  + MV  G  P++ T+N +F  + K + V+   + + +M + + + 
Sbjct: 360 SHCKDGNLDEALKVLNSMVKKGCSPNASTFNGLFGSIAKLRDVNGAHRLYAKMKELKCKA 419

Query: 395 TPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 454
             +     + M +D    ++ +++   + E+ + P   +   L+     +G  ++  +F 
Sbjct: 420 NTVTYNILMRMFVDTKSTDMVLKLKKEMDEDDVEPNVNTYCVLIAMYCGMGHWNNAYKFF 479

Query: 455 EEMLNRRIL-----IYEVTMHKLKKA 475
            EM+  + L     +YE  + +L+KA
Sbjct: 480 REMVEEKCLKPSLPVYEKVLQQLRKA 505


>gi|356495741|ref|XP_003516732.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Glycine max]
          Length = 523

 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 114/468 (24%), Positives = 218/468 (46%), Gaps = 14/468 (2%)

Query: 13  KNKIIPSSSSTTTS--PTSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIES 70
           K KI+PS   T     P+ H+ H     +    L    ++  +R++ +        D+E 
Sbjct: 9   KYKILPSFFCTLVQHKPSYHHFHSFPTSQVSGTLLPDLVNEISRLLSD--HRYPHHDLEL 66

Query: 71  ALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGR 128
           +L       + +LV +VL+   +   SA  FF WA    G + S  +++++V++LG   +
Sbjct: 67  SLNPFSAQLSTNLVEQVLKRCKNLGFSAHRFFLWAKSIPGFQHSVMSFHILVEILGSCKQ 126

Query: 129 FEQMWNAVRVMKEDGVLSLPT--FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN 186
           F  +W+ +  M+E     + +  F  IF +Y  A   D A+ SF+ M   GV+  +  ++
Sbjct: 127 FAILWDFLTEMRESHHYEINSEIFWLIFRAYSQANLPDGAIRSFNRMDEFGVKPTIHDLD 186

Query: 187 SLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
            LL  +C++++   +A +  ++ K        +++IL+ GW + G+ E+A   F  M+E 
Sbjct: 187 KLLFILCKRKH-VKQAQQLFHQAKNRFSLTAKTYSILISGWGEIGDSEKACDLFQAMLE- 244

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
            +  P  +LAY   L  L +G +VDEA      M  +   P    +S  +      +D  
Sbjct: 245 -QGCPVDLLAYNNLLQALCKGGRVDEAKNIFHDMLSKRVEPDAFTYSIFIHSYCDADDVQ 303

Query: 307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM 366
            A ++ D M    +NL+PN+  YN +I  LC N+ V+  ++  D+M+  G  PD+ +YN 
Sbjct: 304 SAFRVLDKMRR--YNLLPNVFTYNCIIKQLCKNEHVEEAYQLLDEMISRGVKPDTWSYNA 361

Query: 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 426
           I      +  V+   +    M K+   P        + +L+     +   E+W  +++  
Sbjct: 362 IQAYHCDHCEVNRALRLMFRMEKDICLPDRHTYNMVLKLLIRIGRFDKVTEVWENMVDKK 421

Query: 427 ILPLEASANELLVGL-RNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 473
             P  ++ + ++ G  +  G+L +  ++ E M++  I  Y  T+  L+
Sbjct: 422 FYPSVSTYSVMIHGFCKKKGKLEEACKYFEMMIDEGIPPYVTTVEMLR 469


>gi|225447826|ref|XP_002268129.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Vitis vinifera]
          Length = 679

 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 113/454 (24%), Positives = 212/454 (46%), Gaps = 13/454 (2%)

Query: 45  DAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRW 104
           D   +S   R+I E+ A     ++E+ L    +  +  LV  VL+    +   A  FF W
Sbjct: 201 DPEEVSRVCRVIDELFA--LDRNMEAVLDECNVDLSHALVVGVLERFKHARKPAFRFFCW 258

Query: 105 AGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK 162
           AG+  G   +   +N M+ VLG+  +FE M   +  M E G+L++ TF+    ++  A +
Sbjct: 259 AGQKAGFTHNSRTYNAMMSVLGRTRQFESMMGMLGEMGEKGLLTMETFSIAIKAFAAAKE 318

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE-NQTSRALEFLNRVKKIVDPDGDSFA 221
             +AV  F++M  +  +  V  +N LL  + R +  + ++AL    +++    P+  ++ 
Sbjct: 319 RKKAVGVFELMKRYNFDAGVDTINCLLDNLGRAKLGKEAQAL--FEKLEDRFTPNLRTYT 376

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           +LL GW +  N+ EA +T+ EM+++  + P+ ++A+ T L  L++ K+  +A+K   VMK
Sbjct: 377 VLLNGWCRIKNLVEAGRTWNEMIDK-GFKPD-IIAHHTMLEGLLKCKKKSDAIKLFEVMK 434

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
            +   P ++ ++  +  L K      AV+ +D MV  G    P+  +Y  +I    N   
Sbjct: 435 AKGPSPNVRTYTILIRDLCKQMKMQEAVEYFDEMVDSG--CQPDAAVYTCLITGFGNQKK 492

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
           +D V+    +M   G   D  TYN + + +   +   +  + + +MI+N  Q T      
Sbjct: 493 MDKVYALLKEMKEKGCPADGRTYNALIKLMTNRQMPDDAVRIYKKMIQNGIQSTLHTYNM 552

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461
            +         E+   +W  +   G  P + S    + GL   GR  +  R+ EEM+ + 
Sbjct: 553 MMKSYFYTRNYEMGCAVWEEMGRKGCCPDDNSYIVFIGGLIRHGRSEEACRYLEEMIEKG 612

Query: 462 ILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCK 495
           +   ++  +K    F    +   DI + L R+ K
Sbjct: 613 MKAPQLDYNKFAADFSRAGKP--DILEELARKMK 644


>gi|357480939|ref|XP_003610755.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512090|gb|AES93713.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 596

 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 113/433 (26%), Positives = 198/433 (45%), Gaps = 10/433 (2%)

Query: 62  HASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL--SPYAWNLM 119
           H+S D +  AL  +G   +  LV +VL+   +   +A  FF WA +      SP  +NLM
Sbjct: 158 HSSHDHVVQALDGSGFRVSNSLVMQVLKRFGNDWVAAYGFFIWAKKQTPYVHSPEVYNLM 217

Query: 120 VDVLGKNGRFEQMWNAVRVMKE-DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGV 178
           VD+LGK   F+ MW  V+ MK  +G + L T + +   +  A ++++AV +F  M  +GV
Sbjct: 218 VDILGKAKEFDLMWKLVKEMKRIEGYVCLDTMSKVMRRFAKAQRHEDAVEAFRGMGKYGV 277

Query: 179 EQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANK 238
           E+D  A+N LL A+ + ++    A   L+  K  V     SF IL+ GW K  N E+A K
Sbjct: 278 EKDTAALNKLLDALVKGQS-IEIAHNVLDEFKSSVPLSSPSFNILINGWCKVRNFEKARK 336

Query: 239 TFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDI 298
              E  E   + P+ V  Y  F+ +    K   +  + L  M+G  C P    ++  L  
Sbjct: 337 VMEERKEH-GFEPD-VFTYNNFIESYCHDKDFRKVDEVLEEMRGNGCPPNAVTYTILLLG 394

Query: 299 LVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAF 358
             K    + A++ ++ M   G  ++P+   Y++++ +L     + +    FD M   G  
Sbjct: 395 YGKAGQLSKALEEYERMKKDG--IVPDTPFYSSLMYILGKAGRLKDACEVFDDMPKQGVV 452

Query: 359 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 418
            D +TYN +      + +     +   EM +   +P        + M       ++   +
Sbjct: 453 RDVVTYNTMISTACAHSKEETALRLLKEMEETSCKPDLQTYHPLLKMCCKKKRMKVLKFL 512

Query: 419 WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 478
            +++ ++ + P   +   L+  L N G+L +   F EEM+++     E T+  L +    
Sbjct: 513 LDHMFKHDLCPDRGTYTLLVQSLSNSGKLVEACTFFEEMVSKGFTPMETTVKLLTRKL-- 570

Query: 479 ESRSMRDIFDSLE 491
           E +SM    D +E
Sbjct: 571 EIKSMLKEKDQIE 583



 Score = 47.0 bits (110), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 11/174 (6%)

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           +N +I   C   + +   +  ++   HG  PD  TYN   E    +K   +V++   EM 
Sbjct: 318 FNILINGWCKVRNFEKARKVMEERKEHGFEPDVFTYNNFIESYCHDKDFRKVDEVLEEMR 377

Query: 389 KNEWQPTPLNCATAITMLL---DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
            N   P   N  T   +LL    A +   A+E +  + ++GI+P     + L+  L   G
Sbjct: 378 GNGCPP---NAVTYTILLLGYGKAGQLSKALEEYERMKKDGIVPDTPFYSSLMYILGKAG 434

Query: 446 RLSDVRRFAEEM----LNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCK 495
           RL D     ++M    + R ++ Y  TM     A   E  ++R + +  E  CK
Sbjct: 435 RLKDACEVFDDMPKQGVVRDVVTYN-TMISTACAHSKEETALRLLKEMEETSCK 487


>gi|357467093|ref|XP_003603831.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492879|gb|AES74082.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 530

 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 96/386 (24%), Positives = 186/386 (48%), Gaps = 13/386 (3%)

Query: 98  AVDFFRWAG--RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIF 154
           ++ FF WA    G   SP  +N M+D+ GK   F+  W+ + +MK  GV +++ TF+ + 
Sbjct: 126 SLAFFNWATTLEGFPSSPEPYNEMIDLAGKLRHFDLAWHLIDLMKSRGVRITVSTFSVLV 185

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD 214
             Y  AG   EAV +F+ M  +G + D V+ + ++S++C++  + S A  F + +K   +
Sbjct: 186 RRYVRAGLAAEAVHAFNRMEDYGCKPDKVSFSIVISSLCKKR-RASEAELFFDSLKHKFE 244

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           PD   +  L+ GW + G++ +A + F +M E       +V  Y   + +L R  Q+  A 
Sbjct: 245 PDVIVYTSLVHGWCRAGDIAKAEEVFSDMKE--AGVKPNVYTYSIVIDSLCRCGQITRAH 302

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
                M    C P    F++ + + VK   +   +Q+++ M  +G     + I YN +I 
Sbjct: 303 DVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLQVYNQMKRLG--CAADTISYNFLIE 360

Query: 335 LLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
             C ++++D   +  D MV  G  P++ T+N IF C+ +   V+   + + +M + +  P
Sbjct: 361 SHCKDENLDEAVKVLDTMVKKGVAPNASTFNSIFGCIAELHDVNGAHRMYAKMKELKCMP 420

Query: 395 TPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 454
             L     + M  D+   ++ +++   + E+ + P   +   L++     G  ++     
Sbjct: 421 NTLTYNILMRMFADSKSIDMVLKLKKEMDESEVEPNVNTYRILILMFCEKGHWNNAYNLM 480

Query: 455 EEMLNRRIL-----IYEVTMHKLKKA 475
           +EM+  + L     IYE  +  L+ A
Sbjct: 481 KEMVEEKCLKPNLSIYETVLELLRNA 506


>gi|356561933|ref|XP_003549231.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g62470, mitochondrial-like [Glycine max]
          Length = 510

 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 102/409 (24%), Positives = 189/409 (46%), Gaps = 9/409 (2%)

Query: 56  ICEILAH--ASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRL 111
           +C+++    A   ++E  L   G+  + DLV +VLQ    +   A  FF  AG+  G   
Sbjct: 39  VCKVIDELFALDRNMEVVLDECGVRLSHDLVVDVLQRFKHARKPAFRFFCXAGKRPGFAH 98

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
               +N M+ VLG+  +FE M   +  M E G+L++ TF+    ++  A +  + V  FD
Sbjct: 99  DSRTYNFMMCVLGRTRQFETMVAKLEEMGEKGLLTMETFSIAIKAFAEAKQRKKEVGIFD 158

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
           +M  +G +  V  +N LL ++         A     ++K    P   ++ ILL GW +  
Sbjct: 159 LMKKYGFKVGVDVINFLLDSL-STAKLGKEAQAVFEKLKDRFTPSLQTYTILLSGWCRLK 217

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           N+ EA + + EM++R  +NP+ ++A+   L  L++ K+  +A+K   +MK +   P ++ 
Sbjct: 218 NLLEAGRVWNEMIDR-GFNPD-IVAHNVMLEGLLKCKKKSDAIKLFEIMKAKGPSPNVRS 275

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           ++  +    K      A++ +D+MV  G    P+  +Y  +I        +D V+    +
Sbjct: 276 YTIMIQDFCKQKLMGEAIEYFDVMVDRG--CQPDAALYTCLITGFGRQKKMDMVYSLLKE 333

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M   G  PD  TYN + + +       +  + + +MI++  +PT       +        
Sbjct: 334 MRERGCPPDGRTYNALIKLMTSQHMPDDAVRIYKKMIQSGIKPTIHTYNMIMKSYFVTKN 393

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
            E+  EIW+ +   G  P + S    + GL    R  +  ++ EEML +
Sbjct: 394 YEMGHEIWDEMHPKGCCPDDNSYIVYIGGLIRQDRSGEACKYLEEMLEK 442



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/176 (20%), Positives = 76/176 (43%), Gaps = 2/176 (1%)

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346
           P+L+ ++  L    +L +   A ++W+ M+  GFN  P+++ +N ++  L       +  
Sbjct: 201 PSLQTYTILLSGWCRLKNLLEAGRVWNEMIDRGFN--PDIVAHNVMLEGLLKCKKKSDAI 258

Query: 347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406
           + F+ M   G  P+  +Y ++ +   K K + E  ++F  M+    QP        IT  
Sbjct: 259 KLFEIMKAKGPSPNVRSYTIMIQDFCKQKLMGEAIEYFDVMVDRGCQPDAALYTCLITGF 318

Query: 407 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
               + ++   +   + E G  P   + N L+  + +     D  R  ++M+   I
Sbjct: 319 GRQKKMDMVYSLLKEMRERGCPPDGRTYNALIKLMTSQHMPDDAVRIYKKMIQSGI 374


>gi|449437410|ref|XP_004136485.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Cucumis sativus]
 gi|449519964|ref|XP_004167004.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Cucumis sativus]
          Length = 534

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/386 (23%), Positives = 181/386 (46%), Gaps = 13/386 (3%)

Query: 98  AVDFFRWA--GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIF 154
           A+ FF WA  G G   SP  +N M+D+ GK  +F   W  + +MK   V +++ TF+ + 
Sbjct: 131 ALAFFNWATAGEGFEHSPQPYNEMIDLAGKVKQFGLAWYLIDLMKARNVEITVVTFSMLV 190

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD 214
             Y  AG   EAV +F+ M  +G   D++A ++++S +C++  +   A  F + +K   +
Sbjct: 191 RRYVRAGLAAEAVHAFNRMEDYGCNADIIAFSNVISILCKKR-RAVEAQSFFDNLKHKFE 249

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           PD   +  L+ GW + G++ EA   F EM  +      +V  Y   +  L R  Q+  A 
Sbjct: 250 PDVIVYTSLVHGWCRAGDISEAESVFREM--KMAGISPNVYTYSIVIDALCRSGQITRAH 307

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
                M    C P    F+N + + ++   +   +Q+++ M  +      +LI YN +I 
Sbjct: 308 DVFAEMLDAGCNPNSVTFNNLIRVHLRAGRTEKVLQVYNQMKRL--RCAADLITYNFLIE 365

Query: 335 LLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
             C +D++    +  + M  +   P++ ++N IF C+ K++ V+   + F  M +   +P
Sbjct: 366 THCKDDNLGEAIKVLNSMAKNDCTPNASSFNPIFRCIAKSQDVNGAHRMFARMKEVGCKP 425

Query: 395 TPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 454
             +     + M       ++  ++   + E  + P   +  EL+     +G  +    F 
Sbjct: 426 NTVTYNILMRMFAVPKSADMIFKLKKEMDEEEVEPNFNTYRELIALYCGMGHWNHAYMFF 485

Query: 455 EEMLNRRIL-----IYEVTMHKLKKA 475
            EM++ + +     +Y++ + +L+KA
Sbjct: 486 REMIDEKCIKPSMPLYKMVLEELRKA 511


>gi|356517665|ref|XP_003527507.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Glycine max]
          Length = 564

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/409 (23%), Positives = 198/409 (48%), Gaps = 18/409 (4%)

Query: 80  TPDLVHEVLQ----LSYDSP-SSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQM 132
           +P + H V++    + +  P   ++ FF W+    G   SP  +N M+D+ GK  +F+  
Sbjct: 138 SPSVAHRVIEKCGGVRHGIPFLQSLAFFNWSSSLDGFPASPEPYNEMLDLAGKLRQFDLA 197

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
           W+ + +MK  GV +++ TF+++   Y  AG   EAV +F+ M  +G   D+VA + ++S+
Sbjct: 198 WHVIDLMKSRGVEITVHTFSALVRRYVRAGLAAEAVHAFNRMEDYGCTPDMVAFSIVISS 257

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           +C++  + + A  F + +K   +PD   +  L+ GW + G++ +A + F +M  +     
Sbjct: 258 LCKKR-RANEAQSFFDSLKHRFEPDVVVYTSLVHGWCRAGDISKAEEVFSDM--KMAGIK 314

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
            +V  Y   + +L R  Q+  A      M    C P    F++ + + VK   +   +++
Sbjct: 315 PNVYTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLKV 374

Query: 312 WDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECL 371
           ++ M  +G     + I YN +I   C +++++   +  + MV  G  P++ T+N IF C+
Sbjct: 375 YNQMKRLG--CPADTISYNFIIESHCRDENLEEAAKILNLMVKKGVAPNASTFNFIFGCI 432

Query: 372 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 431
            K   V+   + +  M +   QP  L     + M  ++   ++ +++   + E+ + P  
Sbjct: 433 AKLHDVNGAHRMYARMKELNCQPNTLTYNILMRMFAESRSTDMVLKMKKEMDESQVEPNV 492

Query: 432 ASANELLVGLRNLGRLSDVRRFAEEMLNRRIL-----IYEVTMHKLKKA 475
            +   L+    ++   ++  +   EM+  + L     +YE  +  L+KA
Sbjct: 493 NTYRILISMFCDMKHWNNAYKLMMEMVEEKCLRPNLSVYETVLELLRKA 541



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 107/251 (42%), Gaps = 6/251 (2%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEA 166
           G + + Y +++++D L + G+  +  +    M + G   +  TF S+   +  AG+ ++ 
Sbjct: 312 GIKPNVYTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKV 371

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLE 225
           +  ++ M   G   D ++ N ++ + CR EN    A + LN  VKK V P+  +F  +  
Sbjct: 372 LKVYNQMKRLGCPADTISYNFIIESHCRDEN-LEEAAKILNLMVKKGVAPNASTFNFIFG 430

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
              K  +V  A++ +  M E     P + L Y   +      +  D  LK  + M     
Sbjct: 431 CIAKLHDVNGAHRMYARMKE-LNCQP-NTLTYNILMRMFAESRSTDMVLKMKKEMDESQV 488

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P +  +   + +   +    +A +L   MV     L PNL +Y  V+ LL     +   
Sbjct: 489 EPNVNTYRILISMFCDMKHWNNAYKLMMEMVEEKC-LRPNLSVYETVLELLRKAGQLKKH 547

Query: 346 FRFFDQMVFHG 356
               D+MV  G
Sbjct: 548 EELVDKMVARG 558


>gi|356540361|ref|XP_003538658.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Glycine max]
          Length = 523

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 112/468 (23%), Positives = 216/468 (46%), Gaps = 14/468 (2%)

Query: 13  KNKIIPSSSSTTTS--PTSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIES 70
           K KI+PS   T     P+ H+ H    P+    L    ++  +R++ +        D+E 
Sbjct: 9   KYKILPSFFCTLVQHKPSYHHFHSFPTPQVSGPLLPDLVNEISRLLSD--HRYPHHDLEL 66

Query: 71  ALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGR 128
           +L       + +LV +VL+   +   SA  FF WA    G + S  +++++V++LG   +
Sbjct: 67  SLNPFSAQISTNLVDQVLKRCNNLGFSAHRFFLWAKSIPGFQHSVMSFHILVEILGSCKQ 126

Query: 129 FEQMWNAVRVMKEDGVLSLPT--FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN 186
           F  +W+ +  M+      + +  F  IF +Y  A   D A+ SF+ M   G++  +   +
Sbjct: 127 FAILWDFLIEMRGSCHYEINSEIFWLIFRAYSQANLPDGAIRSFNRMDEFGIKPTINDFD 186

Query: 187 SLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
            LL  +C+ ++   +A +F ++ K        +++IL+ GW   G+ E+A++ F  M+E 
Sbjct: 187 KLLFILCKTKH-VKQAQQFFDQAKNRFLLTAKTYSILISGWGDIGDSEKAHELFQAMLE- 244

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
            +  P  +LAY   L  L +G  VDEA      M  +   P    +S  +      +D  
Sbjct: 245 -QGCPVDLLAYNNLLQALCKGGCVDEAKTIFHDMLSKRVEPDAFTYSIFIHSYCDADDVQ 303

Query: 307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM 366
            A+++ D M    +N++PN+  YN +I  LC N+ V+  +   D+M+  G  PD+ +YN 
Sbjct: 304 SALRVLDKMRR--YNILPNVFTYNCIIKRLCKNEHVEEAYLLLDEMISRGVRPDTWSYNA 361

Query: 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 426
           I      +  V+   +    M K+   P        + +L+     +   ++W  + +  
Sbjct: 362 IQAYHCDHCEVNRAIRLMFRMEKDNCLPDRHTYNMVLKLLIRIGRFDKVTKVWGNMGDKK 421

Query: 427 ILPLEASANELLVGL-RNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 473
             P  ++ + ++ G  +  G+L +  ++ E M++  I  Y  T+  L+
Sbjct: 422 FYPSVSTYSVMIHGFCKKKGKLEEACKYFEMMIDEGIPPYVTTVEMLR 469


>gi|357520891|ref|XP_003630734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524756|gb|AET05210.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 520

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 108/411 (26%), Positives = 196/411 (47%), Gaps = 15/411 (3%)

Query: 67  DIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLG 124
           D+E +L       + DLV +VL+       SA  FF WA    G + S  +++++V++LG
Sbjct: 59  DLELSLTPFSTQISTDLVEQVLKRCNHLGFSAHRFFLWAKSIPGFQHSVQSFHILVEILG 118

Query: 125 KNGRFEQMWNAVRVMKEDGV---LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD 181
           ++ +F  +W+ +   +E      ++   F  IF +Y  A   D A+ SF  M   G++  
Sbjct: 119 RSKQFAILWDFLIETRESDSSCKITNEIFWIIFTAYSRADLPDGAIRSFVRMDEFGIKPS 178

Query: 182 VVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFG 241
           ++ V+ LL  +C++++   +A +F ++VK        +++IL+ GW K G+  +A + F 
Sbjct: 179 IIDVDLLLYTLCKKKH-VRQAQQFFDQVKSHFLLTTKTYSILINGWGKIGDSGKARELFD 237

Query: 242 EMVERFEWNPEHV--LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299
            M+E+      HV  LAY   L  L +G  VDEA+ FL  M  +   P    +S  +   
Sbjct: 238 AMLEQ----GCHVDLLAYNNLLEALCKGGHVDEAMDFLNDMLSKKVEPDAFTYSIFIRSY 293

Query: 300 VKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFP 359
              N+   A  + D M     NL+PN+  YN +I  LC    V+  ++  D+M+  G  P
Sbjct: 294 CDANNVHSAFGVLDKMRRC--NLLPNVFTYNCIIKRLCKIKKVEEAYQLLDEMISSGLKP 351

Query: 360 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 419
           D+ +YN I      +  V+   K    M K+   P        + +L+     + A E+W
Sbjct: 352 DTWSYNAIQAYHCDHCEVNRALKLISRMEKDVCFPDRHTYNMVLKLLIRIGRFDKATEVW 411

Query: 420 NYILENGILPLEASANELLVGL-RNLGRLSDVRRFAEEMLNRRILIYEVTM 469
             + +    P  ++ + ++ GL +  G+L +  ++   M++  I  Y+ T+
Sbjct: 412 ECMGDKKFYPSVSTYSVMIHGLCKKKGKLEEACKYFAMMIDEGIPPYDTTI 462


>gi|224128340|ref|XP_002320305.1| predicted protein [Populus trichocarpa]
 gi|222861078|gb|EEE98620.1| predicted protein [Populus trichocarpa]
          Length = 540

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 107/447 (23%), Positives = 213/447 (47%), Gaps = 13/447 (2%)

Query: 56  ICEILAH--ASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRL 111
           +C+++    A   ++E+ L   GI  + DLV EVL+    +   A  FF WA    G   
Sbjct: 79  VCKVIDELFALDHNMEAVLDECGINLSHDLVIEVLERFRHARKPAFRFFCWAAEKPGFVH 138

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
               ++ M+ +L K  +FE M + +  M E  +L+L TF+    ++  A +  +AV  F+
Sbjct: 139 DSRTYHSMMIILAKARQFETMMSMLEEMGEKRLLTLDTFSIAMRAFAAAKERKKAVGIFE 198

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQE-NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
           +M  H     V  +N+LL ++ R +  + ++AL    +++    P+  ++ +LL GW + 
Sbjct: 199 LMKNHKYRVGVETINALLDSLGRAKLGKEAQAL--FGKLEGRFTPNLRTYTVLLNGWCRV 256

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
            N+ EA + + EM++   + P+ ++ +   L  L+R K+  +A+KF  VMK +   P ++
Sbjct: 257 KNLMEAGRIWNEMLDE-GFKPD-IVTHNIMLEGLLRSKKRSDAIKFFEVMKAKGPSPDVR 314

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
            ++  +  L K      AV  +  MV  G +  P+  +Y  ++    N+  +D V+    
Sbjct: 315 SYTILIRDLCKQTKMKEAVGYFYEMVDSGCH--PDAAVYTCLMTGYGNHKRMDMVYELLK 372

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
           +M   G  PD  TYN + + +   +   +  + + +MI+N  +P+  +    +       
Sbjct: 373 EMKEKGCPPDGKTYNALIKLMTSQRMPDDAVRIYKKMIQNGIEPSIHSYNMIMKSYFRIR 432

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 470
             E+   +W+ + + G  P + S    + GL + GR  +  ++ EEM+ + +   ++  +
Sbjct: 433 NYEMGHAVWDEMSKKGFCPDDNSYTVFIGGLISQGRSEEACKYLEEMIEKGMKAPQLDYN 492

Query: 471 KLKKAFYNESRSMRDIFDSLERRCKTS 497
           K    F    +   DI + L ++ K S
Sbjct: 493 KFAADFSRAGKP--DILEELAQKMKFS 517


>gi|225459754|ref|XP_002284756.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Vitis vinifera]
          Length = 531

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 105/430 (24%), Positives = 195/430 (45%), Gaps = 38/430 (8%)

Query: 63  ASSDDIESALA------CTGI---IPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL-- 111
           +S+D + SA+       C G+   IP P                 + FF WA   +    
Sbjct: 100 SSADSVSSAIVRRVIEKCGGVRHGIPFPQ---------------TLAFFNWATNLEEFGH 144

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSF 170
           SP  +  M+D+ GK  +F+  W  + +MK   V + + TF  +   Y  AG   EAV +F
Sbjct: 145 SPEPYMEMIDLAGKVRQFDLAWQLIDLMKTRNVEIPVETFTILVRRYVKAGLAAEAVHAF 204

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
           + M  +G + D +A + ++S++ ++  +   A  F + +K   +PD   +  L+ GW + 
Sbjct: 205 NRMEDYGCKPDKIAFSVVISSLSKKR-RAIEAQSFFDSLKDRFEPDVVVYTSLVHGWCRA 263

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           GN+ EA + FGEM  +      +V  Y   +  L R  Q+  A      M    C P   
Sbjct: 264 GNISEAERVFGEM--KMAGIQPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAI 321

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
            F+N + + VK   +   +Q+++ M  +G    P+ I YN +I   C +D+++   +  +
Sbjct: 322 TFNNLMRVHVKAGRTEKVLQVYNQMKRLG--CPPDAITYNFLIESHCRDDNLEEAVKILN 379

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
             V  G   ++ ++N IF C+ K   V+   + F +M   + +P  +     + M  D  
Sbjct: 380 S-VKKGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKK 438

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL-----IY 465
             ++ +++   + EN I P   +   L+     +G  ++   F +EM+  + L     +Y
Sbjct: 439 STDMVLKLRKEMDENEIEPNANTYRVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPVY 498

Query: 466 EVTMHKLKKA 475
           E+ + +L+KA
Sbjct: 499 EMVLQQLRKA 508


>gi|224110770|ref|XP_002315631.1| predicted protein [Populus trichocarpa]
 gi|222864671|gb|EEF01802.1| predicted protein [Populus trichocarpa]
          Length = 452

 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 116/441 (26%), Positives = 208/441 (47%), Gaps = 23/441 (5%)

Query: 63  ASSDDIESALA----CTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAW 116
           +S D+I  +LA    C  I  + DLV ++L    D   SA+  FRWAG   G +  P A+
Sbjct: 18  SSPDEILLSLADEQVCDNIEVSNDLVDKLLLRFKDDWKSALGVFRWAGLRPGYKHRPEAY 77

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176
           ++MVD+LGK  + +QM   +  M  + +++L T       + GAGK+++AV  FD +   
Sbjct: 78  DMMVDILGKMKQMDQMRELLEEMNRNHLVTLNTVGKAMRRFSGAGKWEDAVRMFDELGTF 137

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA 236
           G+E++  ++N LL  +C+ E +  +A      +K  + P+  +F I + GW K   V+EA
Sbjct: 138 GLEKNAESMNLLLDTLCK-EGKVEQARAIFLELKSHILPNAHTFNIFIHGWCKANLVDEA 196

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
           + T  EM +   + P  V++Y T ++   R     +  + L  M+ + C P +  ++  +
Sbjct: 197 HWTLQEM-KGHAFRP-CVISYSTIILFYCRQHNFSKVYELLDEMEAQGCPPNVVTYTTII 254

Query: 297 DILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD-QMVFH 355
             L K  ++  A+QL   M   G    P+   +N++I +L            F+ +M   
Sbjct: 255 VFLAKSQNTEEALQLTQRMKSAGCK--PDTPFFNSLIYILGRAGRFQEAVDVFEKEMPNA 312

Query: 356 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML---LDADEP 412
           G   D+ TYN +   L  +  V +      EM  +   P  L+  T   +L   L   + 
Sbjct: 313 GVSRDTSTYNSMIAMLCHHGHVSKALSLLREMETS--APFKLDGQTFYPLLKSCLRTGDM 370

Query: 413 EIAIEIWNYILENGILPLEASANELLV-GLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK 471
            +  ++ + +++   L L+ SA  LL+ GL    +        EEM+++ I+    T H 
Sbjct: 371 NLLSQLLDDMVKKHQLSLDRSAYALLIHGLCRANKCQWAYHLFEEMISKDIVPKYQTCHM 430

Query: 472 LKKAFYNESRSMRDIFDSLER 492
           L      E   ++ ++D+ E+
Sbjct: 431 LL-----EEVKLKSMYDTAEK 446


>gi|18394846|ref|NP_564110.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174883|sp|Q9LN22.1|PPR54_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g20300, mitochondrial; Flags: Precursor
 gi|9558596|gb|AAF88159.1|AC026234_10 Contains similarity to a hypothetical protein T3P18.15 gi|5454201
           from Arabidopsis thaliana BAC T3P18 gb|AC005698 and
           contains multiple PPR PF|01535 repeats [Arabidopsis
           thaliana]
 gi|17386104|gb|AAL38598.1|AF446865_1 At1g20300/F14O10_8 [Arabidopsis thaliana]
 gi|15450347|gb|AAK96467.1| At1g20300/F14O10_8 [Arabidopsis thaliana]
 gi|332191838|gb|AEE29959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 537

 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 91/387 (23%), Positives = 184/387 (47%), Gaps = 14/387 (3%)

Query: 98  AVDFFRWAGRGQ---RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASI 153
           ++ FF WA         SP+ +N M+D+ GK  +F+  W+ + +MK   V +S+ TF  +
Sbjct: 133 SLAFFNWATSRDDYDHKSPHPYNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTIL 192

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV 213
              Y  AG   EAV  F+ M  +G   D +A + ++S + R+  + S A  F + +K   
Sbjct: 193 IRRYVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVISNLSRKR-RASEAQSFFDSLKDRF 251

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
           +PD   +  L+ GW + G + EA K F EM  +      +V  Y   +  L R  Q+  A
Sbjct: 252 EPDVIVYTNLVRGWCRAGEISEAEKVFKEM--KLAGIEPNVYTYSIVIDALCRCGQISRA 309

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
                 M    C P    F+N + + VK   +   +Q+++ M  +G    P+ I YN +I
Sbjct: 310 HDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCE--PDTITYNFLI 367

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
              C +++++N  +  + M+      ++ T+N IF  + K + V+   + + +M++ + +
Sbjct: 368 EAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCE 427

Query: 394 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 453
           P  +     + M + +   ++ +++   + +  + P   +   L+     +G  ++  + 
Sbjct: 428 PNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVNTYRLLVTMFCGMGHWNNAYKL 487

Query: 454 AEEMLNRRIL-----IYEVTMHKLKKA 475
            +EM+  + L     +YE+ + +L++A
Sbjct: 488 FKEMVEEKCLTPSLSLYEMVLAQLRRA 514


>gi|6721172|gb|AAF26800.1|AC016829_24 hypothetical protein [Arabidopsis thaliana]
          Length = 572

 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 173/368 (47%), Gaps = 45/368 (12%)

Query: 58  EILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA--GRGQRLSPYA 115
           ++    SSD+I     C  +  +  LVH++L    D   SA+   +WA   +G + S  A
Sbjct: 133 DVFKRLSSDEI-----CKRVNLSDGLVHKLLHRFRDDWRSALGILKWAESCKGHKHSSDA 187

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
           +++ VD+LGK  ++++M   V  M+ D +++L T A I   + GAG+++EAV  FD +  
Sbjct: 188 YDMAVDILGKAKKWDRMKEFVERMRGDKLVTLNTVAKIMRRFAGAGEWEEAVGIFDRLGE 247

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEE 235
            G+E++  ++N LL  +C+ E +  +A   L ++K  + P+  +F I + GW K   VEE
Sbjct: 248 FGLEKNTESMNLLLDTLCK-EKRVEQARVVLLQLKSHITPNAHTFNIFIHGWCKANRVEE 306

Query: 236 ANKTFGEM-------------------VERFEW--------------NPEHVLAYETFLI 262
           A  T  EM                    ++FE+              +P + + Y T + 
Sbjct: 307 ALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPNSITYTTIMS 366

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI-MVGIGFN 321
           +L   K+ +EAL+    MK   C P   F++  +  L +      A +++ + M  +G +
Sbjct: 367 SLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVS 426

Query: 322 LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG-AFPDSLTYNMIFECLIKNKRVHEV 380
           +  N   YN++I + C++D+ D       +M       PD  TY  +     K   V EV
Sbjct: 427 I--NTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVEV 484

Query: 381 EKFFHEMI 388
            K   EM+
Sbjct: 485 GKLLKEMV 492



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 83/202 (41%), Gaps = 9/202 (4%)

Query: 201 RALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE-RFEWNPEHVLAYET 259
           R  EF+ R++       ++ A ++  +   G  EEA   F  + E   E N E   +   
Sbjct: 203 RMKEFVERMRGDKLVTLNTVAKIMRRFAGAGEWEEAVGIFDRLGEFGLEKNTE---SMNL 259

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG 319
            L TL + K+V++A   L  +K  +  P    F+  +    K N    A  LW I    G
Sbjct: 260 LLDTLCKEKRVEQARVVLLQLKS-HITPNAHTFNIFIHGWCKANRVEEA--LWTIQEMKG 316

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
               P +I Y  +I   C   +   V+    +M  +G+ P+S+TY  I   L   K   E
Sbjct: 317 HGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEE 376

Query: 380 VEKFFHEMIKNEWQPTPL--NC 399
             +    M ++  +P  L  NC
Sbjct: 377 ALRVATRMKRSGCKPDSLFYNC 398



 Score = 45.8 bits (107), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 59/145 (40%), Gaps = 1/145 (0%)

Query: 314 IMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 373
           +++ +  ++ PN   +N  I   C  + V+       +M  HG  P  ++Y  I  C  +
Sbjct: 276 VLLQLKSHITPNAHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQ 335

Query: 374 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 433
                +V +   EM  N   P  +   T ++ L    E E A+ +   +  +G  P    
Sbjct: 336 QFEFIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLF 395

Query: 434 ANELLVGLRNLGRLSDVRR-FAEEM 457
            N L+  L   GRL +  R F  EM
Sbjct: 396 YNCLIHTLARAGRLEEAERVFRVEM 420



 Score = 42.4 bits (98), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 86/209 (41%), Gaps = 8/209 (3%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFAS-IFDSYCGAGKYDEAVMSFDV- 172
            +  ++  L     FE+       MK  G      F + +  +   AG+ +EA   F V 
Sbjct: 360 TYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVE 419

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK--IVDPDGDSFAILLEGWEKE 230
           M   GV  +    NS+++  C  + +  +A+E L  ++   + +PD  ++  LL    K 
Sbjct: 420 MPELGVSINTSTYNSMIAMYCHHDEE-DKAIELLKEMESSNLCNPDVHTYQPLLRSCFKR 478

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLIT-LIRGKQVDEALKFLRVMKGENCFPTL 289
           G+V E  K   EMV +   + +   +  TFLI  L R    + A      M  ++  P  
Sbjct: 479 GDVVEVGKLLKEMVTKHHLSLDE--STYTFLIQRLCRANMCEWAYCLFEEMISQDITPRH 536

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGI 318
           +     L+ + K N    A ++  IM  +
Sbjct: 537 RTCLLLLEEVKKKNMHESAERIEHIMKTV 565


>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
 gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
          Length = 581

 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 97/386 (25%), Positives = 182/386 (47%), Gaps = 9/386 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F +   RG   +  A+N +++ L K+   E+ +  +  M   G      T+ +I    C 
Sbjct: 68  FHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLCR 127

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRA---LEFLNRVKKIVDPD 216
            GK  EA   FD M   G   DVVA N LL A+  +E + + A    + ++   + V PD
Sbjct: 128 MGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDAL-YKEGKVAEAWGLFKTMDMADRKVAPD 186

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
             ++  L++G+ +    +EA K F +++ +  + P+ V  Y + L+ L R   +DEA + 
Sbjct: 187 LITYNTLIDGFCRVEKTDEAMKLFKDVIAK-GYMPDTV-TYNSILLGLARKSNMDEAEEM 244

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLL 336
            + M    C P    +S  L    ++ +    ++L++ M    F+  P++++ NAVI +L
Sbjct: 245 FKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFS--PDVLLCNAVIDML 302

Query: 337 CNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 396
           C    VD+  +  ++M   GA PD +TYN++ + L K   V +  + F  M+ N   P  
Sbjct: 303 CKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDI 362

Query: 397 LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 456
           ++ +  +  L   ++   A  +++ ++E  ++P   + N L+ GL   G+L + +   + 
Sbjct: 363 VSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDV 422

Query: 457 MLNRRILIYEVTMHKLKKAFYNESRS 482
           M    +L   VT   L      + R+
Sbjct: 423 MSEHNVLPDGVTCTTLMHGLCRDKRT 448



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/367 (26%), Positives = 168/367 (45%), Gaps = 8/367 (2%)

Query: 96  SSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFA 151
           S A  FF     RG      A+N ++D L K G+  + W   + M        P   T+ 
Sbjct: 132 SEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYN 191

Query: 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK 211
           ++ D +C   K DEA+  F  +   G   D V  NS+L  + R+ N       F   V  
Sbjct: 192 TLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDS 251

Query: 212 IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD 271
              P+G +++I+L G  + GN+    + + EM E+  ++P+ VL     +  L + K+VD
Sbjct: 252 GCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEK-RFSPD-VLLCNAVIDMLCKAKKVD 309

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA 331
           +A K L  M      P +  ++  LD L K N    A +L+  MV  G    P+++ Y+ 
Sbjct: 310 DAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNG--CAPDIVSYSV 367

Query: 332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
           V+  LC  + V +    FD+M+     PD +T+N++ + L K  ++ E +     M ++ 
Sbjct: 368 VLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHN 427

Query: 392 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 451
             P  + C T +  L      + A+ ++ Y++E G +      N +L GL   G+L+   
Sbjct: 428 VLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQAL 487

Query: 452 RFAEEML 458
            F + M+
Sbjct: 488 LFFKSMV 494



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 100/386 (25%), Positives = 176/386 (45%), Gaps = 15/386 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           ++ ++  L K G+  +    V  M E GV   + T+  I D  C AGK DEA   F  M 
Sbjct: 13  YSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADELFHKMI 72

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNV 233
             G   + VA N+L++ +C+ EN   RA + L  +  K  +PD  ++  +L G  + G V
Sbjct: 73  ERGCSANTVAYNALINGLCKDEN-IERAYKLLEEMASKGYEPDNITYNTILSGLCRMGKV 131

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV--MKGENCFPTLKF 291
            EA + F  M  R  ++P+ V+AY   L  L +  +V EA    +   M      P L  
Sbjct: 132 SEAKQFFDSMPSR-GYSPD-VVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLIT 189

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           ++  +D   ++  +  A++L+  ++  G+  MP+ + YN+++  L    ++D     F +
Sbjct: 190 YNTLIDGFCRVEKTDEAMKLFKDVIAKGY--MPDTVTYNSILLGLARKSNMDEAEEMFKK 247

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           MV  G  P+  TY+++     +   +    + + EM +  + P  L C   I ML  A +
Sbjct: 248 MVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKK 307

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR----ILIYEV 467
            + A ++   + + G +P   + N LL GL     +         M++      I+ Y V
Sbjct: 308 VDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSV 367

Query: 468 TMHKLKKAFYNESRSMRDIFDSLERR 493
            ++ L K   N+    R +FD +  R
Sbjct: 368 VLNGLCKT--NKVHDARVLFDRMIER 391



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 141/292 (48%), Gaps = 8/292 (2%)

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEG 231
           M+  G E DVV  ++++S +C+   + + ALE +  + +K V+PD  ++ I+++   + G
Sbjct: 1   MAEKGFEPDVVTYSTIISGLCKT-GKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAG 59

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            V+EA++ F +M+ER      + +AY   +  L + + ++ A K L  M  +   P    
Sbjct: 60  KVDEADELFHKMIER--GCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNIT 117

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD- 350
           ++  L  L ++   + A Q +D M   G++  P+++ YN ++  L     V   +  F  
Sbjct: 118 YNTILSGLCRMGKVSEAKQFFDSMPSRGYS--PDVVAYNGLLDALYKEGKVAEAWGLFKT 175

Query: 351 -QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 409
             M      PD +TYN + +   + ++  E  K F ++I   + P  +   + +  L   
Sbjct: 176 MDMADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARK 235

Query: 410 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461
              + A E++  ++++G  P  A+ + +L G   +G ++      EEM  +R
Sbjct: 236 SNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKR 287



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 87/185 (47%), Gaps = 2/185 (1%)

Query: 137 RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
           R+++   V  + TF  + D  C AGK DEA    DVMS H V  D V   +L+  +CR +
Sbjct: 387 RMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDK 446

Query: 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVL 255
                   F   V+K    D     I+L G  +EG + +A   F  MV+   E++P+ V+
Sbjct: 447 RTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQALLFFKSMVKSDGEFSPD-VV 505

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
            Y T +  LI   +VD+A+ + + M G  C P    ++  ++ L K      A +L   M
Sbjct: 506 TYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAM 565

Query: 316 VGIGF 320
              GF
Sbjct: 566 KEKGF 570



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 72/158 (45%)

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           P+++ Y+ +I  LC    V       ++M   G  PD  TY +I + L +  +V E ++ 
Sbjct: 8   PDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADEL 67

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
           FH+MI+       +     I  L   +  E A ++   +   G  P   + N +L GL  
Sbjct: 68  FHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLCR 127

Query: 444 LGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
           +G++S+ ++F + M +R      V  + L  A Y E +
Sbjct: 128 MGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGK 165



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/192 (21%), Positives = 83/192 (43%), Gaps = 4/192 (2%)

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346
           P +  +S  +  L K    T A+++ + M   G N  P++  Y  ++  LC    VD   
Sbjct: 8   PDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVN--PDVATYTIIVDRLCRAGKVDEAD 65

Query: 347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406
             F +M+  G   +++ YN +   L K++ +    K   EM    ++P  +   T ++ L
Sbjct: 66  ELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGL 125

Query: 407 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE--EMLNRRILI 464
               +   A + ++ +   G  P   + N LL  L   G++++     +  +M +R++  
Sbjct: 126 CRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAP 185

Query: 465 YEVTMHKLKKAF 476
             +T + L   F
Sbjct: 186 DLITYNTLIDGF 197


>gi|18396782|ref|NP_566222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|79312733|ref|NP_001030630.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546763|sp|Q9M8W9.2|PP211_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04130, mitochondrial; Flags: Precursor
 gi|332640519|gb|AEE74040.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332640520|gb|AEE74041.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 508

 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 173/368 (47%), Gaps = 45/368 (12%)

Query: 58  EILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA--GRGQRLSPYA 115
           ++    SSD+I     C  +  +  LVH++L    D   SA+   +WA   +G + S  A
Sbjct: 69  DVFKRLSSDEI-----CKRVNLSDGLVHKLLHRFRDDWRSALGILKWAESCKGHKHSSDA 123

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
           +++ VD+LGK  ++++M   V  M+ D +++L T A I   + GAG+++EAV  FD +  
Sbjct: 124 YDMAVDILGKAKKWDRMKEFVERMRGDKLVTLNTVAKIMRRFAGAGEWEEAVGIFDRLGE 183

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEE 235
            G+E++  ++N LL  +C+ E +  +A   L ++K  + P+  +F I + GW K   VEE
Sbjct: 184 FGLEKNTESMNLLLDTLCK-EKRVEQARVVLLQLKSHITPNAHTFNIFIHGWCKANRVEE 242

Query: 236 ANKTFGEM-------------------VERFEW--------------NPEHVLAYETFLI 262
           A  T  EM                    ++FE+              +P + + Y T + 
Sbjct: 243 ALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPNSITYTTIMS 302

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI-MVGIGFN 321
           +L   K+ +EAL+    MK   C P   F++  +  L +      A +++ + M  +G +
Sbjct: 303 SLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVS 362

Query: 322 LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG-AFPDSLTYNMIFECLIKNKRVHEV 380
           +  N   YN++I + C++D+ D       +M       PD  TY  +     K   V EV
Sbjct: 363 I--NTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVEV 420

Query: 381 EKFFHEMI 388
            K   EM+
Sbjct: 421 GKLLKEMV 428



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 83/202 (41%), Gaps = 9/202 (4%)

Query: 201 RALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE-RFEWNPEHVLAYET 259
           R  EF+ R++       ++ A ++  +   G  EEA   F  + E   E N E   +   
Sbjct: 139 RMKEFVERMRGDKLVTLNTVAKIMRRFAGAGEWEEAVGIFDRLGEFGLEKNTE---SMNL 195

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG 319
            L TL + K+V++A   L  +K  +  P    F+  +    K N    A  LW I    G
Sbjct: 196 LLDTLCKEKRVEQARVVLLQLKS-HITPNAHTFNIFIHGWCKANRVEEA--LWTIQEMKG 252

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
               P +I Y  +I   C   +   V+    +M  +G+ P+S+TY  I   L   K   E
Sbjct: 253 HGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEE 312

Query: 380 VEKFFHEMIKNEWQPTPL--NC 399
             +    M ++  +P  L  NC
Sbjct: 313 ALRVATRMKRSGCKPDSLFYNC 334



 Score = 45.4 bits (106), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 59/145 (40%), Gaps = 1/145 (0%)

Query: 314 IMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 373
           +++ +  ++ PN   +N  I   C  + V+       +M  HG  P  ++Y  I  C  +
Sbjct: 212 VLLQLKSHITPNAHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQ 271

Query: 374 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 433
                +V +   EM  N   P  +   T ++ L    E E A+ +   +  +G  P    
Sbjct: 272 QFEFIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLF 331

Query: 434 ANELLVGLRNLGRLSDVRR-FAEEM 457
            N L+  L   GRL +  R F  EM
Sbjct: 332 YNCLIHTLARAGRLEEAERVFRVEM 356



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 8/178 (4%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFAS-IFDSYCGAGKYDEAVMSFDV- 172
            +  ++  L     FE+       MK  G      F + +  +   AG+ +EA   F V 
Sbjct: 296 TYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVE 355

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK--IVDPDGDSFAILLEGWEKE 230
           M   GV  +    NS+++  C  + +  +A+E L  ++   + +PD  ++  LL    K 
Sbjct: 356 MPELGVSINTSTYNSMIAMYCHHDEE-DKAIELLKEMESSNLCNPDVHTYQPLLRSCFKR 414

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLIT-LIRGKQVDEALKFLRVMKGENCFP 287
           G+V E  K   EMV +   + +   +  TFLI  L R    + A      M  ++  P
Sbjct: 415 GDVVEVGKLLKEMVTKHHLSLDE--STYTFLIQRLCRANMCEWAYCLFEEMISQDITP 470


>gi|222423065|dbj|BAH19514.1| AT3G04130 [Arabidopsis thaliana]
          Length = 508

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 173/368 (47%), Gaps = 45/368 (12%)

Query: 58  EILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA--GRGQRLSPYA 115
           ++    SSD+I     C  +  +  LVH++L    D   SA+   +WA   +G + S  A
Sbjct: 69  DVFKRLSSDEI-----CKRVNLSDGLVHKLLHRFRDDWRSALGILKWAESCKGHKHSSDA 123

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
           +++ VD+LGK  ++++M   V  M+ D +++L T A I   + GAG+++EAV  FD +  
Sbjct: 124 YDMAVDILGKAKKWDRMKEFVERMRGDKLVTLNTVAKIMRRFAGAGEWEEAVGIFDRLGE 183

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEE 235
            G+E++  ++N LL  +C+ E +  +A   L ++K  + P+  +F I + GW K   VEE
Sbjct: 184 FGLEKNTESMNLLLDTLCK-EKRVEQARVVLLQLKSHITPNAHTFNIFIHGWCKANRVEE 242

Query: 236 ANKTFGEM-------------------VERFEW--------------NPEHVLAYETFLI 262
           A  T  EM                    ++FE+              +P + + Y T + 
Sbjct: 243 ALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPNSITYTTIMS 302

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI-MVGIGFN 321
           +L   K+ +EAL+    MK   C P   F++  +  L +      A +++ + M  +G +
Sbjct: 303 SLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVS 362

Query: 322 LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG-AFPDSLTYNMIFECLIKNKRVHEV 380
           +  N   YN++I + C++D+ D       +M       PD  TY  +     K   V EV
Sbjct: 363 I--NTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVEV 420

Query: 381 EKFFHEMI 388
            K   EM+
Sbjct: 421 GKLLKEMV 428



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 83/202 (41%), Gaps = 9/202 (4%)

Query: 201 RALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE-RFEWNPEHVLAYET 259
           R  EF+ R++       ++ A ++  +   G  EEA   F  + E   E N E   +   
Sbjct: 139 RMKEFVERMRGDKLVTLNTVAKIMRRFAGAGEWEEAVGIFDRLGEFGLEKNTE---SMNL 195

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG 319
            L TL + K+V++A   L  +K  +  P    F+  +    K N    A  LW I    G
Sbjct: 196 LLDTLCKEKRVEQARVVLLQLKS-HITPNAHTFNIFIHGWCKANRVEEA--LWTIQEMKG 252

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
               P +I Y  +I   C   +   V+    +M  +G+ P+S+TY  I   L   K   E
Sbjct: 253 HGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEE 312

Query: 380 VEKFFHEMIKNEWQPTPL--NC 399
             +    M ++  +P  L  NC
Sbjct: 313 ALRVATRMKRSGCKPDSLFYNC 334



 Score = 45.4 bits (106), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 59/145 (40%), Gaps = 1/145 (0%)

Query: 314 IMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 373
           +++ +  ++ PN   +N  I   C  + V+       +M  HG  P  ++Y  I  C  +
Sbjct: 212 VLLQLKSHITPNAHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQ 271

Query: 374 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 433
                +V +   EM  N   P  +   T ++ L    E E A+ +   +  +G  P    
Sbjct: 272 QFEFIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLF 331

Query: 434 ANELLVGLRNLGRLSDVRR-FAEEM 457
            N L+  L   GRL +  R F  EM
Sbjct: 332 YNCLIHTLARAGRLEEAERVFRVEM 356



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 8/178 (4%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFAS-IFDSYCGAGKYDEAVMSFDV- 172
            +  ++  L     FE+       MK  G      F + +  +   AG+ +EA   F V 
Sbjct: 296 TYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVE 355

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK--IVDPDGDSFAILLEGWEKE 230
           M   GV  +    NS+++  C  + +  +A+E L  ++   + +PD  ++  LL    K 
Sbjct: 356 MPELGVSINTSTYNSMIAMYCHHDEE-DKAIELLKEMESSNLCNPDVHTYQPLLRSCFKR 414

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLIT-LIRGKQVDEALKFLRVMKGENCFP 287
           G+V E  K   EMV +   + +   +  TFLI  L R    + A      M  ++  P
Sbjct: 415 GDVVEVGKLLKEMVTKHHLSLDE--STYTFLIQRLCRANMCEWAYCLFEEMISQDITP 470


>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
 gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
          Length = 457

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 107/436 (24%), Positives = 194/436 (44%), Gaps = 50/436 (11%)

Query: 101 FFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSY 157
           FF+WAG          ++N +++VL K+GR + ++     M   G + +  T+  +  S 
Sbjct: 3   FFQWAGSQVHYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSL 62

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN---------- 207
           C A +++EA   F  M+  G   +V + + L++ +CR + +   A E LN          
Sbjct: 63  CQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQ-KVDEAAELLNEMIDGGHQPN 121

Query: 208 ---------------RVKKIVD-----------PDGDSFAILLEGWEKEGNVEEANKTFG 241
                          ++K+ VD           PDG  + +L++G+ K+G++ EA + F 
Sbjct: 122 VVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFE 181

Query: 242 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
           EM+E+       V  Y + L    R  +        + M  + C P +  F+N LD   K
Sbjct: 182 EMLEK--GCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCK 239

Query: 302 LNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS 361
           + D   A +L+  M  +G    P+++ YN +I  +C+        R   +M+  G  PD 
Sbjct: 240 MGDMVEAHRLFLEMRSLG--CPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDI 297

Query: 362 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 421
           ++YN++ +   K+  +    K F+E+ K+  +P   + +T I  L  A +   A  ++  
Sbjct: 298 VSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKD 357

Query: 422 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI----YEVTMHKLKKAFY 477
           ++ NG  P  A    L++GL    RL++     + M+    +     Y + M+KL KA  
Sbjct: 358 MIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKA-- 415

Query: 478 NESRSMRDIFDSLERR 493
             S  + +IF  L  R
Sbjct: 416 KRSDDVCEIFHELTER 431



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 139/327 (42%), Gaps = 13/327 (3%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWN-----AVRVMKEDGVLSLPTFASIFDSYCGAGK 162
           G + +   +  ++  L K G+ ++  +       R    DGV+    +  + D +   G 
Sbjct: 117 GHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVV----YNVLIDGFSKKGD 172

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
             EA   F+ M   G    V   NSLLS   R+         F + +++   P+  +F  
Sbjct: 173 MGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNN 232

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           LL+G+ K G++ EA++ F EM  R    P  V++Y T +  +    +  EA + LR M  
Sbjct: 233 LLDGFCKMGDMVEAHRLFLEM--RSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIR 290

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
               P +  ++  +D   K     HA++L+  +   G  L P+   Y+ +I  LC    V
Sbjct: 291 SGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSG--LEPDAFSYSTIIDCLCRAGKV 348

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
              F  F  M+ +G+ PD+     +   L + +R+ E  + F  M+K E  P        
Sbjct: 349 GAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLL 408

Query: 403 ITMLLDADEPEIAIEIWNYILENGILP 429
           +  L  A   +   EI++ + E G  P
Sbjct: 409 MYKLCKAKRSDDVCEIFHELTERGFSP 435



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 120/299 (40%), Gaps = 6/299 (2%)

Query: 98  AVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFD 155
           AVD F R   RG       +N+++D   K G   + +     M E G + ++ T+ S+  
Sbjct: 141 AVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLS 200

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDP 215
            +   G++      F  M   G   ++   N+LL   C+  +       FL        P
Sbjct: 201 GFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPP 260

Query: 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK 275
           D  S+  L+ G   +G   EA +   EM+ R    P+ +++Y   +    +   +D A+K
Sbjct: 261 DVVSYNTLIRGMCSKGKPHEAQRLLREMI-RSGVGPD-IVSYNILIDGYSKSGALDHAIK 318

Query: 276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGL 335
               +      P    +S  +D L +      A  ++  M+  G +     ++   VIGL
Sbjct: 319 LFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANG-SAPDAAVVIPLVIGL 377

Query: 336 LCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
            C  + +      F  MV     P    YN++   L K KR  +V + FHE+ +  + P
Sbjct: 378 -CRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSP 435


>gi|449494995|ref|XP_004159705.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial-like [Cucumis sativus]
          Length = 488

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 169/344 (49%), Gaps = 12/344 (3%)

Query: 55  IICEILAHASSDDIESAL----ACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--G 108
           II ++   +S D++  +L     C  I  + DLV+++LQ   D   SA+  FRWA    G
Sbjct: 43  IIAKVQVGSSEDEVFQSLLQDPVCNSIQLSHDLVYKLLQRFKDDWKSALGVFRWAESLSG 102

Query: 109 QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVM 168
            + +P  +++++D LGK  +  +M   +  MKE  +++L T A     + GAG+++ AV 
Sbjct: 103 FKHTPDLYDILIDTLGKTKQLVKMRGMLEEMKEARLVTLDTVAKAMRRFAGAGQWENAVR 162

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
            FD +  +G+E++  ++N LL  +C+ E +  +A +    +K  + P+ ++F + + GW 
Sbjct: 163 IFDDLETYGLEKNTESMNVLLDTLCK-EKKVEKARQMYLELKSHIAPNANTFNMFIHGWC 221

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           K   ++EA+ T  EM + +   P  V++Y T ++        ++  + L  M  + C   
Sbjct: 222 KVNKIDEAHWTLEEM-KGYGHRP-CVISYSTIILFYCHRCNFNKVYELLDEMDAQGCPAN 279

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
           +  ++  +  L K  +   A+Q+ + M   G+   P+ + YN +I  L     V      
Sbjct: 280 VITYTTIMCSLTKSEEFEEALQIAERMKSAGYE--PDTLFYNCLIHTLGRAGKVREAIHV 337

Query: 349 FD-QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
           F+ +M      P++ TYN +     +  R  +  K   EM K+E
Sbjct: 338 FEVEMPSKSVLPNTSTYNSMIAMYCRRAREEKAMKLLEEMQKSE 381


>gi|334183891|ref|NP_177483.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806278|sp|Q9FX35.2|PP117_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g73400, mitochondrial; Flags: Precursor
 gi|332197336|gb|AEE35457.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 568

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 120/451 (26%), Positives = 199/451 (44%), Gaps = 39/451 (8%)

Query: 66  DDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLS--PYAWNLMVDVL 123
           DD+E AL  + +  T  +V ++LQ       +A  FF WAG  +  S  P A+N M+D+L
Sbjct: 110 DDMEKALDESSVDLTTPVVCKILQRLQYEEKTAFRFFTWAGHQEHYSHEPIAYNEMIDIL 169

Query: 124 G----KNGRFEQMWNAVRVMKEDG--VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
                KN +F  + + +  MK +   V+ +     I   YC   +Y   V  F       
Sbjct: 170 SSTKYKNKQFRIVIDMLDYMKRNNKTVVLVDVLLEILRKYCE--RYLTHVQKFAKRKRIR 227

Query: 178 VEQ--DVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEE 235
           V+   ++ A N LL A+C+           L R++  V PD ++F +L  GW +  + ++
Sbjct: 228 VKTQPEINAFNMLLDALCKC-GLVKEGEALLRRMRHRVKPDANTFNVLFFGWCRVRDPKK 286

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM--KGENC-FPTLKFF 292
           A K   EM+E     PE+   Y   + T  +   VDEA      M  KG     PT K F
Sbjct: 287 AMKLLEEMIEAGH-KPEN-FTYCAAIDTFCQAGMVDEAADLFDFMITKGSAVSAPTAKTF 344

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  +  L K + +    +L   M+  G   +P++  Y  VI  +C  + VD  ++F D+M
Sbjct: 345 ALMIVALAKNDKAEECFELIGRMISTG--CLPDVSTYKDVIEGMCMAEKVDEAYKFLDEM 402

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
              G  PD +TYN     L +N++  E  K +  M+++   P+       I+M  + D+P
Sbjct: 403 SNKGYPPDIVTYNCFLRVLCENRKTDEALKLYGRMVESRCAPSVQTYNMLISMFFEMDDP 462

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI-LIYEV---- 467
           + A   W  + +   +    +   ++ GL +  R  +     EE++N+ + L Y V    
Sbjct: 463 DGAFNTWTEMDKRDCVQDVETYCAMINGLFDCHRAKEACFLLEEVVNKGLKLPYRVFDSF 522

Query: 468 -----------TMHKLK---KAFYNESRSMR 484
                       +HK+    K FYN S + R
Sbjct: 523 LMRLSEVGNLKAIHKVSEHMKKFYNHSMARR 553


>gi|449435037|ref|XP_004135302.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial-like [Cucumis sativus]
          Length = 519

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 169/344 (49%), Gaps = 12/344 (3%)

Query: 55  IICEILAHASSDDIESAL----ACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--G 108
           II ++   +S D++  +L     C  I  + DLV+++LQ   D   SA+  FRWA    G
Sbjct: 74  IIAKVQVGSSEDEVFQSLLQDPVCNSIQLSHDLVYKLLQRFKDDWKSALGVFRWAESLSG 133

Query: 109 QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVM 168
            + +P  +++++D LGK  +  +M   +  MKE  +++L T A     + GAG+++ AV 
Sbjct: 134 FKHTPDLYDILIDTLGKTKQLVKMRGMLEEMKEARLVTLDTVAKAMRRFAGAGQWENAVR 193

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
            FD +  +G+E++  ++N LL  +C+ E +  +A +    +K  + P+ ++F + + GW 
Sbjct: 194 IFDDLETYGLEKNTESMNVLLDTLCK-EKKVEKARQMYLELKSHIAPNANTFNMFIHGWC 252

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           K   ++EA+ T  EM + +   P  V++Y T ++        ++  + L  M  + C   
Sbjct: 253 KVNKIDEAHWTLEEM-KGYGHRP-CVISYSTIILFYCHRCNFNKVYELLDEMDAQGCPAN 310

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
           +  ++  +  L K  +   A+Q+ + M   G+   P+ + YN +I  L     V      
Sbjct: 311 VITYTTIMCSLTKSEEFEEALQIAERMKSAGYE--PDTLFYNCLIHTLGRAGKVREAIHV 368

Query: 349 FD-QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
           F+ +M      P++ TYN +     +  R  +  K   EM K+E
Sbjct: 369 FEVEMPSKSVLPNTSTYNSMIAMYCRRAREEKAMKLLEEMQKSE 412


>gi|297844992|ref|XP_002890377.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336219|gb|EFH66636.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 537

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/387 (23%), Positives = 183/387 (47%), Gaps = 14/387 (3%)

Query: 98  AVDFFRWAGRGQ---RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASI 153
           ++ FF WA       + SP+ +N M+D+ GK  +F+  W+ + +MK   V +S+ TF  +
Sbjct: 133 SLAFFNWATSRDDYDQKSPHPYNEMIDLAGKVRQFDLAWHLIDLMKSRNVEISIETFTIL 192

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV 213
              Y  AG   EAV  F+ M  +G   D +A + ++S + R+  + S A  F + +K   
Sbjct: 193 IRRYVRAGLASEAVHCFNRMEDYGCVPDQIAFSIVISNLSRKR-RASEAQSFFDSLKDRF 251

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
           +PD   +  L+ GW + G + EA K F +M  +      +V  Y   +  L R  Q+  A
Sbjct: 252 EPDVIVYTNLVRGWCRAGEISEAEKVFKDM--KLAGIEPNVYTYSIVIDALCRCGQISRA 309

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
                 M    C P    F+N + + VK       +Q+++ M  +G    P+ I YN +I
Sbjct: 310 HDVFADMLDSGCAPNAITFNNLMRVHVKAGRPEKVLQVYNQMKKLGCE--PDTITYNFLI 367

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
              C +++++N  +  + M+      ++ T+N IF  + K + V+   + + +M++ + +
Sbjct: 368 ETHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCE 427

Query: 394 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 453
           P  +     + M   +   ++ +++   + +  + P   +   L+     +G  ++  + 
Sbjct: 428 PNTVTYNILMRMFAGSKSTDMVLKMKKDMDDKEVEPNVNTYRLLVTMFCGMGHWNNAYKL 487

Query: 454 AEEMLNRRIL-----IYEVTMHKLKKA 475
            +EM+  + L     +YE+ + +L++A
Sbjct: 488 FKEMVEEKCLTPSLSLYEMVLAQLRRA 514


>gi|147767652|emb|CAN77908.1| hypothetical protein VITISV_033177 [Vitis vinifera]
          Length = 1563

 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 105/430 (24%), Positives = 195/430 (45%), Gaps = 38/430 (8%)

Query: 63   ASSDDIESALA------CTGI---IPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL-- 111
            +S+D + SA+       C G+   IP P                 + FF WA   +    
Sbjct: 1132 SSADSVSSAIVRRVIEKCGGVRHGIPFPQ---------------TLAFFNWATNLEEFGH 1176

Query: 112  SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSF 170
            SP  +  M+D+ GK  +F+  W  + +MK   V + + TF  +   Y  AG   EAV +F
Sbjct: 1177 SPEPYMEMIDLAGKVRQFDLAWQLIDLMKTRNVEIPVETFTILVRRYVKAGLAAEAVHAF 1236

Query: 171  DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
            + M  +G + D +A + ++S++ ++  +   A  F + +K   +PD   +  L+ GW + 
Sbjct: 1237 NRMEDYGCKPDKIAFSVVISSLSKKR-RAIEAQSFFDSLKDRFEPDVVVYTSLVHGWCRA 1295

Query: 231  GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
            GN+ EA + FGEM  +      +V  Y   +  L R  Q+  A      M    C P   
Sbjct: 1296 GNISEAERVFGEM--KMAGIXPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAI 1353

Query: 291  FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
             F+N + + VK   +   +Q+++ M  +G    P+ I YN +I   C +D+++   +  +
Sbjct: 1354 TFNNLMRVHVKAGRTEKVLQVYNQMKRLG--CPPDAITYNFLIESHCRDDNLEEAVKILN 1411

Query: 351  QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
              V  G   ++ ++N IF C+ K   V+   + F +M   + +P  +     + M  D  
Sbjct: 1412 S-VKKGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKK 1470

Query: 411  EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL-----IY 465
              ++ +++   + EN I P   +   L+     +G  ++   F +EM+  + L     +Y
Sbjct: 1471 STDMVLKLRKEMDENEIEPNANTYRVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPVY 1530

Query: 466  EVTMHKLKKA 475
            E+ + +L+KA
Sbjct: 1531 EMVLQQLRKA 1540


>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
 gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
          Length = 457

 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 106/436 (24%), Positives = 194/436 (44%), Gaps = 50/436 (11%)

Query: 101 FFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSY 157
           FF+WAG          ++N +++VL K+GR + ++     M   G + +  T+  +  S 
Sbjct: 3   FFQWAGSQVHYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSL 62

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN---------- 207
           C A +++EA   F  M+  G   +V + + L++ +CR + +   A E LN          
Sbjct: 63  CQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQ-KVDEAAELLNEMIDGGHQPN 121

Query: 208 ---------------RVKKIVD-----------PDGDSFAILLEGWEKEGNVEEANKTFG 241
                          ++K+ VD           PDG  + +L++G+ K+G++ EA + F 
Sbjct: 122 VVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFE 181

Query: 242 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
           EM+E+       V  Y + L    R  +        + M  + C P +  F+N LD   K
Sbjct: 182 EMLEK--GCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCK 239

Query: 302 LNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS 361
           + D   A +L+  M  +G    P+++ YN ++  +C+        R   +M+  G  PD 
Sbjct: 240 MGDMVEAHRLFLEMRSLG--CPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDI 297

Query: 362 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 421
           ++YN++ +   K+  +    K F+E+ K+  +P   + +T I  L  A +   A  ++  
Sbjct: 298 VSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKD 357

Query: 422 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI----YEVTMHKLKKAFY 477
           ++ NG  P  A    L++GL    RL++     + M+    +     Y + M+KL KA  
Sbjct: 358 MIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKA-- 415

Query: 478 NESRSMRDIFDSLERR 493
             S  + +IF  L  R
Sbjct: 416 KRSDDVCEIFHELTER 431



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 139/327 (42%), Gaps = 13/327 (3%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWN-----AVRVMKEDGVLSLPTFASIFDSYCGAGK 162
           G + +   +  ++  L K G+ ++  +       R    DGV+    +  + D +   G 
Sbjct: 117 GHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVV----YNVLIDGFSKKGD 172

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
             EA   F+ M   G    V   NSLLS   R+         F + +++   P+  +F  
Sbjct: 173 MGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNN 232

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           LL+G+ K G++ EA++ F EM  R    P  V++Y T +  +    +  EA + LR M  
Sbjct: 233 LLDGFCKMGDMVEAHRLFLEM--RSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIR 290

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
               P +  ++  +D   K     HA++L+  +   G  L P+   Y+ +I  LC    V
Sbjct: 291 SGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSG--LEPDAFSYSTIIDCLCRAGKV 348

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
              F  F  M+ +G+ PD+     +   L + +R+ E  + F  M+K E  P        
Sbjct: 349 GAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLL 408

Query: 403 ITMLLDADEPEIAIEIWNYILENGILP 429
           +  L  A   +   EI++ + E G  P
Sbjct: 409 MYKLCKAKRSDDVCEIFHELTERGFSP 435


>gi|11120809|gb|AAG30989.1|AC012396_25 hypothetical protein [Arabidopsis thaliana]
          Length = 466

 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 120/451 (26%), Positives = 199/451 (44%), Gaps = 39/451 (8%)

Query: 66  DDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLS--PYAWNLMVDVL 123
           DD+E AL  + +  T  +V ++LQ       +A  FF WAG  +  S  P A+N M+D+L
Sbjct: 8   DDMEKALDESSVDLTTPVVCKILQRLQYEEKTAFRFFTWAGHQEHYSHEPIAYNEMIDIL 67

Query: 124 G----KNGRFEQMWNAVRVMKEDG--VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
                KN +F  + + +  MK +   V+ +     I   YC   +Y   V  F       
Sbjct: 68  SSTKYKNKQFRIVIDMLDYMKRNNKTVVLVDVLLEILRKYCE--RYLTHVQKFAKRKRIR 125

Query: 178 VEQ--DVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEE 235
           V+   ++ A N LL A+C+           L R++  V PD ++F +L  GW +  + ++
Sbjct: 126 VKTQPEINAFNMLLDALCKC-GLVKEGEALLRRMRHRVKPDANTFNVLFFGWCRVRDPKK 184

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM--KGENC-FPTLKFF 292
           A K   EM+E     PE+   Y   + T  +   VDEA      M  KG     PT K F
Sbjct: 185 AMKLLEEMIEAGH-KPEN-FTYCAAIDTFCQAGMVDEAADLFDFMITKGSAVSAPTAKTF 242

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  +  L K + +    +L   M+  G   +P++  Y  VI  +C  + VD  ++F D+M
Sbjct: 243 ALMIVALAKNDKAEECFELIGRMISTG--CLPDVSTYKDVIEGMCMAEKVDEAYKFLDEM 300

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
              G  PD +TYN     L +N++  E  K +  M+++   P+       I+M  + D+P
Sbjct: 301 SNKGYPPDIVTYNCFLRVLCENRKTDEALKLYGRMVESRCAPSVQTYNMLISMFFEMDDP 360

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI-LIYEV---- 467
           + A   W  + +   +    +   ++ GL +  R  +     EE++N+ + L Y V    
Sbjct: 361 DGAFNTWTEMDKRDCVQDVETYCAMINGLFDCHRAKEACFLLEEVVNKGLKLPYRVFDSF 420

Query: 468 -----------TMHKLK---KAFYNESRSMR 484
                       +HK+    K FYN S + R
Sbjct: 421 LMRLSEVGNLKAIHKVSEHMKKFYNHSMARR 451


>gi|357129397|ref|XP_003566348.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Brachypodium distachyon]
          Length = 649

 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 105/451 (23%), Positives = 195/451 (43%), Gaps = 10/451 (2%)

Query: 48  YISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR 107
           ++      I +++A  +  ++E+ L+      +  LV  VL     +   +  FF+WA  
Sbjct: 171 HVGRVCAAIADVMAAGADANLEATLSALSPPLSEALVLAVLDRFKHAHRPSRRFFQWAAA 230

Query: 108 GQRL--SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDE 165
                 +P  +  M+ +LGK  +FE M   V+ M + G L +  F     S+  AG+   
Sbjct: 231 SDEFEHTPVTYCKMLHILGKARQFETMVALVQEMGKAGALCMDAFKIAIKSFAAAGEIKN 290

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           AV  F++M +HG +  V + N LL A+  QE     A    +R++    PD  S+  L+ 
Sbjct: 291 AVGVFEMMRVHGFDDGVESFNCLLVALA-QEGLGKEAARVFDRMRDQYTPDLRSYTALML 349

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
            W    N+ EA + + +M+E+    P+ V+ + T +  L+RG++  EA+K   +MK +  
Sbjct: 350 AWCNARNLVEAGRVWNDMLEK-GMKPD-VVVHNTMIDGLLRGQRRPEAVKMFELMKAKGP 407

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P +  ++  +    K      A++ ++ M   G    P +  Y  ++    N   +D V
Sbjct: 408 PPNVWTYTMLIRDHCKQGKLDMAMRCFEEMQVAG--CQPEVATYTCLLVGYGNAKRMDRV 465

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI-T 404
               ++M   G  PD  TYN + + L       +  + + +MI    +PT       + +
Sbjct: 466 TAMLEEMAQKGCPPDGRTYNALIKLLTNRNMPDDAVRIYKKMITKGLEPTIHTYNMMMKS 525

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 464
             L      +   +W  +   GI P   S    + G    GR ++  +F EEM+ + +  
Sbjct: 526 YFLGGRNYAMGCAVWEEMHRKGICPDVNSYTVFINGHIRHGRPAEACKFLEEMIQKGMKA 585

Query: 465 YEVTMHKLKKAFYNESRSMRDIFDSLERRCK 495
            ++  +K    F    +   DI   L ++ K
Sbjct: 586 PQIDYNKFAADFSKAGKP--DILYELAQKVK 614


>gi|326517954|dbj|BAK07229.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 549

 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 107/455 (23%), Positives = 186/455 (40%), Gaps = 46/455 (10%)

Query: 16  IIPSSSSTTTSPTSHNPHRP--TRPRFPTHLDAPY---ISSSARIICEILAHASSDDIES 70
           ++P  S+     +     +P   RP   +H +A +      ++RI+    A  S + I  
Sbjct: 58  VLPIKSNPVEERSHGGGSKPLSIRPEAASHEEAEFEADFDEASRILTSCFA--SPEAIVI 115

Query: 71  ALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAG--RGQRLSPYAWNLMVDVLGKNGR 128
           A+ C  +  +  +V ++L+       +A  FF WAG   G R S  ++N MVD+LGK  +
Sbjct: 116 AMDCCPVRVSDRMVDKILRRFGSDWVAAFGFFMWAGAQEGYRHSADSYNSMVDILGKFKQ 175

Query: 129 FEQMWNAVRVMKE-DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS 187
           F+ MW  +  M E  G++SL T   +     GA ++ +A+ +F+ M   GV +D  A+N 
Sbjct: 176 FDLMWGLISQMDEIGGLVSLATMTKVMRRLAGASRWTDAIDAFNKMDQFGVVKDTTAMNV 235

Query: 188 LLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE-- 245
           LL  +C+ E    RA      ++  V PD  SF  L+ GW K   + EA     EM E  
Sbjct: 236 LLDTLCK-ERSVKRARGAFQELRGSVPPDESSFNTLVHGWCKARMMNEARDMMKEMEEHG 294

Query: 246 -------------------------------RFEWNPEHVLAYETFLITLIRGKQVDEAL 274
                                          R +  P +V+ Y   +  L +  +  EAL
Sbjct: 295 FKPSVITYTSLIEAYCMEKDFQTVYAILNEMRSKGCPPNVITYTIVMHALGKAGRTQEAL 354

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
                ++G+ C P   F+++ + IL +      A  + D M   G  + P +  +N +I 
Sbjct: 355 DIFDKVRGDGCAPDASFYNSLIYILGRAGRLEDANSVVDKMRMTG--VRPTVATFNTLIS 412

Query: 335 LLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
             C++   +N  +   +M      PD  TY  + +   K + +  +      M + +  P
Sbjct: 413 AACDHSQAENALKMLVKMEEQSCKPDIKTYTPLLKLCCKRQWIKVLRFLICHMFRKDITP 472

Query: 395 TPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
                   +T L    +P  +      ++  G  P
Sbjct: 473 DFSTYTLLVTWLCRNGKPAQSCLFLEEMVLKGFAP 507


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 101/439 (23%), Positives = 195/439 (44%), Gaps = 40/439 (9%)

Query: 56  ICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYA 115
           +C+    A + D   ++ C   + T  ++ + L  +   P +   F +   +G   + + 
Sbjct: 104 LCKARNTAKALDYFRSMECEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWT 163

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N++++   K  +  + +  ++ MKE G+  ++ T++++   +C   K D A   F  M 
Sbjct: 164 YNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMV 223

Query: 175 MHGVEQDVVAVNSLLSAICRQ----------ENQTSRALE-----------FLNRVKKI- 212
            +G   ++V  N+LLS +CR           +    R L+            L +  KI 
Sbjct: 224 ENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKID 283

Query: 213 -------------VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYET 259
                          PD  +++ L+ G  K G ++EA K F +M E     P+ V+ +  
Sbjct: 284 MALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMREN-SCEPD-VVTFTA 341

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG 319
            +  L +G ++ EA + L  M+  NC P +  +S+ +D L K      A +++  M+  G
Sbjct: 342 LMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRG 401

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
               PN++ YN++I   C  + VD+     ++M   G  PD +TYN + + L K  R  E
Sbjct: 402 IE--PNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPE 459

Query: 380 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 439
             + F +M      P  +  +  I      +  ++A  +++ +L+  +LP   + + L+ 
Sbjct: 460 ANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVE 519

Query: 440 GLRNLGRLSDVRRFAEEML 458
           G  N G + D  R  EEM+
Sbjct: 520 GYCNAGLVDDAERLLEEMV 538



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 92/407 (22%), Positives = 178/407 (43%), Gaps = 24/407 (5%)

Query: 95  PSSAVDFFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFA 151
           P +A+ FF WA + Q    + Y +N + + L +  R ++  + ++     G+  ++ T+A
Sbjct: 4   PDAALRFFHWASKQQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYA 63

Query: 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK 211
            +    C +G  D+A    + M   G   D    N ++ A+C+  N T++AL++   ++ 
Sbjct: 64  VVIQGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARN-TAKALDYFRSME- 121

Query: 212 IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF----EWNPEHVLAYETFLITLIRG 267
             + +  ++ I+++G  K   + EA   F +M ++     EW       Y   +    + 
Sbjct: 122 -CEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWT------YNVLINGFCKV 174

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
            +V  A   L+ MK     P +  +S  +    +      A +L+  MV  G   MPNL+
Sbjct: 175 HKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENG--CMPNLV 232

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            YN ++  LC N  +D  +   D+M   G  PD  +Y+ +   L K  ++    K F + 
Sbjct: 233 TYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDN 292

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
              +  P  +  +T I  L  A   + A +++  + EN   P   +   L+ GL    RL
Sbjct: 293 SNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRL 352

Query: 448 SDVRRFAEEMLNR----RILIYEVTMHKLKKAFYNESRSMRDIFDSL 490
            + ++  E M +R     ++ Y   +  L K    + R  +++F  +
Sbjct: 353 QEAQQVLETMEDRNCTPNVITYSSLIDGLCKT--GQVRDAQEVFKRM 397



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 85/392 (21%), Positives = 165/392 (42%), Gaps = 50/392 (12%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP----TFASIFDSYCGAGK 162
           RG +   ++++ ++  L K G+ +    A++V +++     P     ++++    C AG+
Sbjct: 260 RGLQPDKFSYDTLMAGLCKTGKIDM---ALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGR 316

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE--NQTSRALEFLNRVKKIVDPDGDSF 220
            DEA   F+ M  +  E DVV   +L+  +C+ +   +  + LE +    +   P+  ++
Sbjct: 317 LDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETME--DRNCTPNVITY 374

Query: 221 AILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           + L++G  K G V +A + F  M+ R  E N   V+ Y + +        VD AL  +  
Sbjct: 375 SSLIDGLCKTGQVRDAQEVFKRMIVRGIEPN---VVTYNSLIHGFCMTNGVDSALLLMEE 431

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQL---------------WDIMVGIGF---- 320
           M    C P +  ++  +D L K   +  A +L               +  ++G GF    
Sbjct: 432 MTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIG-GFCKLE 490

Query: 321 ---------------NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYN 365
                           ++P+++ ++ ++   CN   VD+  R  ++MV     PD  TY 
Sbjct: 491 RIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYT 550

Query: 366 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 425
            + +   K  R+ E  +    M K   QP  +     I     A +P +A  +   ++ N
Sbjct: 551 SLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGN 610

Query: 426 GILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           G+ P   +   L+ G    G L + R+  E +
Sbjct: 611 GVQPNVITYRSLIGGFCGTGDLEEARKILERL 642



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 91/418 (21%), Positives = 164/418 (39%), Gaps = 57/418 (13%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +  ++D L K  R ++    +  M++     ++ T++S+ D  C  G+  +A   F  M 
Sbjct: 339 FTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMI 398

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
           + G+E +VV  NSL+   C      S  L           PD  ++  L++G  K G   
Sbjct: 399 VRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAP 458

Query: 235 EANKTFGEMVERFEWNPE----------------------------------HVLAYETF 260
           EAN+ FG+M  +F  NP+                                   V+ + T 
Sbjct: 459 EANRLFGDMKAKF-CNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTL 517

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF 320
           +        VD+A + L  M   +C P +  +++ +D   K+     A ++   M   G 
Sbjct: 518 VEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRG- 576

Query: 321 NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEV 380
              PN++ Y A+I   C        +R  ++MV +G  P+ +TY  +         + E 
Sbjct: 577 -CQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEA 635

Query: 381 EKFFHEMIKNEWQPTPLNCAT---AITMLLDA----DEPEIAIEIWNYILENGILPLEAS 433
            K    + ++E      NC     A  +++D          A+E+   I ++G  P    
Sbjct: 636 RKILERLERDE------NCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDI 689

Query: 434 ANELLVGLRNLGRLSDVRRFAEEM-LNRR----ILIYEVTMHKL-KKAFYNESRSMRD 485
              L+ GL     L       EEM L+R+       YE  + +L ++  + E+ ++ D
Sbjct: 690 YVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAYEAVIQELAREGRHEEANALAD 747


>gi|413945076|gb|AFW77725.1| ATP binding protein isoform 1 [Zea mays]
 gi|413945077|gb|AFW77726.1| ATP binding protein isoform 2 [Zea mays]
 gi|413945078|gb|AFW77727.1| ATP binding protein isoform 3 [Zea mays]
          Length = 634

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 104/443 (23%), Positives = 196/443 (44%), Gaps = 10/443 (2%)

Query: 56  ICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA--GRGQRLSP 113
           I +++A  +  ++E+AL+         +V  VL     +   +  FFRWA    G   + 
Sbjct: 169 IADVVASGADANLEAALSALSPPLCEAVVLAVLHRFKHAHRPSYRFFRWATVSGGFTHTT 228

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
             +  M+ +LGK  +FE M   ++ M + G LS+  F     S+  AG+   AV  F++M
Sbjct: 229 ITYCKMLHILGKTRQFESMVAMIQEMGKAGALSMDAFKVAIKSFAAAGEIKNAVGVFELM 288

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
             +G +  V + N LL A+ + E     A +  +++     PD  S+  L+  W    N+
Sbjct: 289 RKNGFDDGVESFNCLLVALAK-EGLGREARQVFDKMHGQYSPDLRSYTALMLAWCNARNL 347

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            EA + + EM+E+   +P+ V+ + T +  L+RG++  EA+K   +MK +   P +  ++
Sbjct: 348 VEAGRVWNEMLEK-GMDPD-VVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPPPNVWTYT 405

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +    K      A++ ++ M        P++  Y  ++    N   +D V    ++M 
Sbjct: 406 MLIRDHCKQGKMDMAMECFEEMQEA--KCQPDVATYTCLLVGYGNAKQMDRVTAVLEEMT 463

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP- 412
             G  PD+ TYN + + L       +  + + +MIK   +PT       +      D   
Sbjct: 464 QKGCPPDARTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFVGDSNY 523

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
            +   +W  + + GI P   S    + G    GR  +  ++ EEM+N+ +   ++  +K 
Sbjct: 524 AMGCAVWEEMHQRGICPDVNSYTVFINGHIRHGRPEEAYKYIEEMINKGMKAPQIDYNKF 583

Query: 473 KKAFYNESRSMRDIFDSLERRCK 495
              F    +   DI   L ++ K
Sbjct: 584 AADFSKAGKP--DILFELAQKVK 604


>gi|225437663|ref|XP_002279193.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Vitis vinifera]
          Length = 526

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 104/439 (23%), Positives = 202/439 (46%), Gaps = 18/439 (4%)

Query: 42  THLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQ---LSYDSPSSA 98
           T +D   + +  RI+    + +S+ +++ +L  +G+  + DL+ +VL+    S+ +P  A
Sbjct: 53  TTVDNGDVETVFRIVS---SASSTRNLKQSLKSSGVFLSNDLIDKVLKRVRFSHGNPFQA 109

Query: 99  VDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM--KEDGVLSLPTFASIF 154
           + FF +  +  G   +P++ + M+ +LG++ RF+Q+W  +  M  K+  ++S  +   + 
Sbjct: 110 LAFFNYTNKRKGFYHTPFSLDTMLYILGRSRRFDQIWELLVDMRRKDQSLISPRSVQVVL 169

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD 214
                     + V SF        E D    N+LL  +C QE     A    + +K    
Sbjct: 170 GRIAKVCSVKQTVESFRKFKKLVPEFDTACFNALLRTLC-QEKSMRDARNVYHSLKHDFR 228

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           PD  +F ILL GW+   + EEA   F EM E     P+ V++Y   +    +G++++ A 
Sbjct: 229 PDLRTFNILLSGWK---SAEEAEGFFDEMRE-MGVEPD-VVSYNCLIDVYCKGREIERAY 283

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
           K +  M+ E   P +  +++ +  L  +     A  +   M   G    P++  YNA I 
Sbjct: 284 KVIDKMRDEQISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYG--CYPDVAAYNAAIR 341

Query: 335 LLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
             C  + + +     D+MV  G  P++ TYN+ F C   +  +      +  M K    P
Sbjct: 342 NFCIANRLGDADGLMDEMVGKGLSPNATTYNLFFRCFYWSNDLGRSCGLYQRMKKTGCLP 401

Query: 395 TPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 454
              +C     +    ++ E+A+E+WN ++E G       ++ L   L ++G+L +V +  
Sbjct: 402 NTQSCMFLTRLFRRQEKVEMALELWNDMVEKGFGSYILVSDVLFDMLCDMGKLVEVEKCC 461

Query: 455 EEMLNRRILIYEVTMHKLK 473
            +M+ +      V+  ++K
Sbjct: 462 LQMIEKGHKPSNVSFRRIK 480



 Score = 45.8 bits (107), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 55/130 (42%)

Query: 348 FFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 407
           FFD+M   G  PD ++YN + +   K + +    K   +M   +  P  ++  + I  L 
Sbjct: 250 FFDEMREMGVEPDVVSYNCLIDVYCKGREIERAYKVIDKMRDEQISPDVISYTSIIGGLG 309

Query: 408 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEV 467
              +P+ A ++   + E G  P  A+ N  +       RL D     +EM+ + +     
Sbjct: 310 LVGQPDKARDVLKEMKEYGCYPDVAAYNAAIRNFCIANRLGDADGLMDEMVGKGLSPNAT 369

Query: 468 TMHKLKKAFY 477
           T +   + FY
Sbjct: 370 TYNLFFRCFY 379


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/400 (23%), Positives = 179/400 (44%), Gaps = 40/400 (10%)

Query: 95  PSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASI 153
           P +   F +   +G   + + +N++++   K  +  + +  ++ MKE G+  ++ T++++
Sbjct: 24  PEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTV 83

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ----------ENQTSRAL 203
              +C   K D A   F  M  +G   ++V  N+LLS +CR           +    R L
Sbjct: 84  IHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGL 143

Query: 204 E-----------FLNRVKKI--------------VDPDGDSFAILLEGWEKEGNVEEANK 238
           +            L +  KI                PD  +++ L+ G  K G ++EA K
Sbjct: 144 QPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACK 203

Query: 239 TFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDI 298
            F +M E     P+ V+ +   +  L +G ++ EA + L  M+  NC P +  +S+ +D 
Sbjct: 204 LFEKMREN-SCEPD-VVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDG 261

Query: 299 LVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAF 358
           L K      A +++  M+  G    PN++ YN++I   C  + VD+     ++M   G  
Sbjct: 262 LCKTGQVRDAQEVFKRMIVRGIE--PNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCL 319

Query: 359 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 418
           PD +TYN + + L K  R  E  + F +M      P  +  +  I      +  ++A  +
Sbjct: 320 PDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTL 379

Query: 419 WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
           ++ +L+  +LP   + + L+ G  N G + D  R  EEM+
Sbjct: 380 FDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMV 419



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/392 (21%), Positives = 165/392 (42%), Gaps = 50/392 (12%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP----TFASIFDSYCGAGK 162
           RG +   ++++ ++  L K G+ +    A++V +++     P     ++++    C  G+
Sbjct: 141 RGLQPDKFSYDTLMAGLCKTGKIDM---ALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGR 197

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE--NQTSRALEFLNRVKKIVDPDGDSF 220
            DEA   F+ M  +  E DVV   +L+  +C+ +   +  + LE +    +   P+  ++
Sbjct: 198 LDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETME--DRNCTPNVITY 255

Query: 221 AILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           + L++G  K G V +A + F  M+ R  E N   V+ Y + +        VD AL  +  
Sbjct: 256 SSLIDGLCKTGQVRDAQEVFKRMIVRGIEPN---VVTYNSLIHGFCMTNGVDSALLLMEE 312

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQL---------------WDIMVGIGF---- 320
           M    C P +  ++  +D L K   +  A +L               +  ++G GF    
Sbjct: 313 MTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIG-GFCKLE 371

Query: 321 ---------------NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYN 365
                           ++P+++ ++ ++   CN   VD+  R  ++MV     PD  TY 
Sbjct: 372 RIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYT 431

Query: 366 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 425
            + +   K  R+ E  +    M K   QP  +     I     A +P +A ++   ++ N
Sbjct: 432 SLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGN 491

Query: 426 GILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           G+ P   +   L+ G    G L + R+  E +
Sbjct: 492 GVQPNVITYRSLIGGFCGTGDLEEARKMLERL 523



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 90/418 (21%), Positives = 164/418 (39%), Gaps = 57/418 (13%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +  ++D L K  R ++    +  M++     ++ T++S+ D  C  G+  +A   F  M 
Sbjct: 220 FTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMI 279

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
           + G+E +VV  NSL+   C      S  L           PD  ++  L++G  K G   
Sbjct: 280 VRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAP 339

Query: 235 EANKTFGEMVERFEWNPE----------------------------------HVLAYETF 260
           EAN+ FG+M  +F  NP+                                   V+ + T 
Sbjct: 340 EANRLFGDMKAKF-CNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTL 398

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF 320
           +        VD+A + L  M   +C P +  +++ +D   K+     A ++   M   G 
Sbjct: 399 VEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGC 458

Query: 321 NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEV 380
              PN++ Y A+I   C        ++  ++MV +G  P+ +TY  +         + E 
Sbjct: 459 Q--PNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEA 516

Query: 381 EKFFHEMIKNEWQPTPLNCAT---AITMLLDA----DEPEIAIEIWNYILENGILPLEAS 433
            K    + ++E      NC     A  +++D          A+E+   I ++G  P    
Sbjct: 517 RKMLERLERDE------NCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDI 570

Query: 434 ANELLVGLRNLGRLSDVRRFAEEM-LNRR----ILIYEVTMHKL-KKAFYNESRSMRD 485
              L+ GL     L       EEM L+R+       YE  + +L ++  + E+ ++ D
Sbjct: 571 YVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAYEAVIQELAREGRHEEANALAD 628



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 121/299 (40%), Gaps = 4/299 (1%)

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
            E++V+    ++  +C+          F    KK   P+  ++ +L+ G+ K   V  A 
Sbjct: 3   CEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAY 62

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297
               EM E       +V+ Y T +    R  +VD A K  R M    C P L  ++  L 
Sbjct: 63  LLLKEMKE--SGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLS 120

Query: 298 ILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGA 357
            L +      A +L D M   G  L P+   Y+ ++  LC    +D   + F+       
Sbjct: 121 GLCRNGLMDEAYELLDEMRERG--LQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDC 178

Query: 358 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 417
            PD + Y+ +   L K  R+ E  K F +M +N  +P  +     +  L   D  + A +
Sbjct: 179 PPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQ 238

Query: 418 IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
           +   + +    P   + + L+ GL   G++ D +   + M+ R I    VT + L   F
Sbjct: 239 VLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGF 297



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/335 (21%), Positives = 141/335 (42%), Gaps = 6/335 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+  + D  C A +  EA   F  M   G   +    N L++  C+  ++  RA   L  
Sbjct: 9   TWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKV-HKVHRAYLLLKE 67

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           +K+  + P+  +++ ++ G+ ++  V+ A K F +MVE       +++ Y T L  L R 
Sbjct: 68  MKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVE--NGCMPNLVTYNTLLSGLCRN 125

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
             +DEA + L  M+     P    +   +  L K      A+++++       +  P+++
Sbjct: 126 GLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFED--NSNGDCPPDVV 183

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            Y+ +I  LC    +D   + F++M  +   PD +T+  + + L K  R+ E ++    M
Sbjct: 184 AYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETM 243

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
                 P  +  ++ I  L    +   A E++  ++  GI P   + N L+ G      +
Sbjct: 244 EDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGV 303

Query: 448 SDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 482
                  EEM     L   +T + L        R+
Sbjct: 304 DSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRA 338


>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
 gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
          Length = 471

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/382 (24%), Positives = 184/382 (48%), Gaps = 14/382 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N+++D   K GR ++       M   G+  S+ T+ S+ +++C   K  EA+  F  M+
Sbjct: 46  YNILIDGYAKKGRVDEANRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMA 105

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFL--NRVKKIVDPDGDSFAILLEGWEKEGN 232
             G E DVV  ++++S +C+   + + ALE L    +++    +  ++  L+ G  K+ N
Sbjct: 106 EKGFEPDVVTYSTIISGLCKT-GKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDEN 164

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +E A K   EM  +  + P+++  Y T L  L R  +V EA +F   M      P +  +
Sbjct: 165 IERAYKLLEEMASK-GYVPDNI-TYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAY 222

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  LD L K   +  A++L+  ++  G+  MP+ + YN+++  L    ++D     F +M
Sbjct: 223 NGLLDALYKEGKTDEAMKLFKDVIAKGY--MPDTVTYNSILLGLARKSNMDEAEEMFKKM 280

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
           V  G  P+  TY+++     + K+V +  K   EM K    P  +     +  L   +  
Sbjct: 281 VASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLV 340

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR----ILIYEVT 468
           + A E+++ +++NG  P   S + +L GL    ++ D R   + M+ R+    ++ + + 
Sbjct: 341 DKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNIL 400

Query: 469 MHKLKKAFYNESRSMRDIFDSL 490
           M  L KA   +    +D+ D +
Sbjct: 401 MDGLCKA--GKLDEAKDLLDQM 420



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 95/393 (24%), Positives = 169/393 (43%), Gaps = 41/393 (10%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G   S Y +N +++   K  + ++     + M E G    + T+++I    C  GK  EA
Sbjct: 73  GLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEA 132

Query: 167 V-MSFDVMSMHGVEQDVVAVNSLLSAICRQEN---------------------------- 197
           + M F  M   G   + VA N+L++ +C+ EN                            
Sbjct: 133 LEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILS 192

Query: 198 ------QTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
                 + S A +F + +  +   PD  ++  LL+   KEG  +EA K F +++ +  + 
Sbjct: 193 GLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAK-GYM 251

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P+ V  Y + L+ L R   +DEA +  + M    C P    +S  L    +      A +
Sbjct: 252 PDTV-TYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHK 310

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
           + + M  IG   +P+++ YN ++  LC  + VD     F  MV +G  PD ++Y+++   
Sbjct: 311 VLEEMSKIG--AVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNG 368

Query: 371 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 430
           L K  +VH+    F  MI+ +  P  +     +  L  A + + A ++ + +  +G  P 
Sbjct: 369 LCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPD 428

Query: 431 EASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
             + N L+ GLR  GR     R  + M  +  L
Sbjct: 429 YVAYNTLMNGLRKQGRHIQADRLTQAMKEKGFL 461



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 91/387 (23%), Positives = 172/387 (44%), Gaps = 14/387 (3%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT-FASIFDSYCGAGKYDEAVMSFDV 172
           Y + +++    K G+    +     M ++G+      +  + D Y   G+ DEA   ++ 
Sbjct: 9   YTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRLYEE 68

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAILLEGWEKEG 231
           M   G+E  +   NSLL+A C+ E +   A+E F    +K  +PD  +++ ++ G  K G
Sbjct: 69  MVSVGLEPSIYTYNSLLNAFCK-ETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTG 127

Query: 232 NVEEA-NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
            V EA    F +M+ER      + +AY   +  L + + ++ A K L  M  +   P   
Sbjct: 128 KVTEALEMLFHKMIER--GCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNI 185

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
            ++  L  L ++   + A Q +D M   G++  P+++ YN ++  L      D   + F 
Sbjct: 186 TYNTILSGLCRMGKVSEAKQFFDSMPSRGYS--PDVVAYNGLLDALYKEGKTDEAMKLFK 243

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
            ++  G  PD++TYN I   L +   + E E+ F +M+ +   P     +  ++    A 
Sbjct: 244 DVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAK 303

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR----ILIYE 466
           + + A ++   + + G +P   + N LL GL     +         M++      I+ Y 
Sbjct: 304 KVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYS 363

Query: 467 VTMHKLKKAFYNESRSMRDIFDSLERR 493
           V ++ L K   N+    R +FD +  R
Sbjct: 364 VVLNGLCKT--NKVHDARVLFDRMIER 388



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 139/296 (46%), Gaps = 7/296 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCG 159
           F +   RG   +  A+N +++ L K+   E+ +  +  M   G V    T+ +I    C 
Sbjct: 137 FHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCR 196

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGD 218
            GK  EA   FD M   G   DVVA N LL A+  +E +T  A++ F + + K   PD  
Sbjct: 197 MGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDAL-YKEGKTDEAMKLFKDVIAKGYMPDTV 255

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++  +L G  ++ N++EA + F +MV        +   Y   L    R K+VD+A K L 
Sbjct: 256 TYNSILLGLARKSNMDEAEEMFKKMVA--SGCAPNGATYSIVLSGHCRAKKVDDAHKVLE 313

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            M      P +  ++  LD L K N    A +L+  MV  G    P+++ Y+ V+  LC 
Sbjct: 314 EMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNG--CAPDIVSYSVVLNGLCK 371

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
            + V +    FD+M+     PD +T+N++ + L K  ++ E +    +M  +   P
Sbjct: 372 TNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAP 427



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/140 (22%), Positives = 68/140 (48%), Gaps = 4/140 (2%)

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           PN   +  V+   C    + + ++ F+QM+ +G  PD + YN++ +   K  RV E  + 
Sbjct: 6   PNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRL 65

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
           + EM+    +P+     + +       + + A+E++  + E G  P   + + ++ GL  
Sbjct: 66  YEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCK 125

Query: 444 LGRLSDVRRFAEEMLNRRIL 463
            G++++    A EML  +++
Sbjct: 126 TGKVTE----ALEMLFHKMI 141


>gi|255568998|ref|XP_002525469.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535282|gb|EEF36959.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 581

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 125/484 (25%), Positives = 204/484 (42%), Gaps = 48/484 (9%)

Query: 18  PSSSSTTTSPTSHNPHRPTRPRFPT---------------------------HLDAPYIS 50
           PSSS+ + + +S N   P  P+ P                            +L    + 
Sbjct: 35  PSSSNLSVAFSSSNLETPIAPKIPNSHEGCSSESDHSDVSDDDDDDDNIRQLNLKDEGLV 94

Query: 51  SSARIICEILAHASSDDIE--SALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR- 107
               II  IL   S + +E  + +   G+  + +LV EVL    +   +A  FF WAGR 
Sbjct: 95  QDVTIIMSILHQLSGNPVEMKNKIEHCGVKVSRELVLEVLSRIRNDWEAAFTFFLWAGRQ 154

Query: 108 -GQRLSPYAWNLMVDVLGKNGRFEQMW---NAVRVMKEDGVLSLP-TFASIFDSYCGAGK 162
            G   S   ++ M+ +LGK  +F+  W   + +R +K    L  P T   +   YC    
Sbjct: 155 LGYSHSVREYHAMISILGKMRKFDTAWALIDEMRGVKTGISLVTPQTLLIMIRKYCAVHD 214

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN-QTSRALEFLNRVKKIVDPDGDSFA 221
              A+ +F        +  +    SLLSA+CR +N Q +  L F N  K +   +  SF 
Sbjct: 215 VGRAINTFYAHKRFKFDLGIDEFQSLLSALCRYKNVQDAEHLMFCN--KDVFPFNTKSFN 272

Query: 222 ILLEGW-EKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           I+L GW    G+  EA++ + EM +R   ++   V++Y + +    +   + +  K    
Sbjct: 273 IVLNGWCNVIGSPREADRIWREMCKRRIHYD---VVSYASIISCYSKAGNLYKVFKLYNQ 329

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
           MK     P  K +++ +  L K    + A+ L   M   G  + PN + YN++I  LC  
Sbjct: 330 MKEVGIEPDRKIYNSVIFALAKGRHVSEAINLMKTMEEKG--IAPNTVTYNSLIKPLCRA 387

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
             +D     FD+M+ HG  P   TY+  F  L   +   EV      M K    PT    
Sbjct: 388 RKIDEARGLFDEMLQHGHSPTIRTYHAFFRSL---RTGEEVFALLENMRKLGCHPTIDTY 444

Query: 400 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
              I       + +   ++WN I ENG+ P  +S   L+ GL   G+L +  +F  +M  
Sbjct: 445 IMLIRKFCRWRQFDDVFKLWNQISENGLGPDRSSYIVLIHGLFLNGKLEEAYKFYADMKE 504

Query: 460 RRIL 463
           +++L
Sbjct: 505 KQLL 508


>gi|115455297|ref|NP_001051249.1| Os03g0746400 [Oryza sativa Japonica Group]
 gi|113549720|dbj|BAF13163.1| Os03g0746400, partial [Oryza sativa Japonica Group]
          Length = 613

 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 111/468 (23%), Positives = 208/468 (44%), Gaps = 23/468 (4%)

Query: 34  RPTRPRFPTHLDAPY---ISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQL 90
           RP  P   +H DA +   I   +RI+    A  S + I  A+ C  +  T  LV ++L  
Sbjct: 143 RPGFPATASHEDAEFEADIDEVSRILSARFA--SPEAIMIAMDCCSVRVTGCLVDKILTR 200

Query: 91  SYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE-DGVLSL 147
             +   +A  FF W G   G      +++LMVD+LGK  +F+ MW  +  M E  G++SL
Sbjct: 201 FSNDWVAAFGFFMWVGTQGGYCHCADSYDLMVDILGKFKQFDLMWGLINQMVEVGGLMSL 260

Query: 148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN 207
            T   +     GA ++ EA+ +F  M   GV +D  A+N LL  +C+ E    RA     
Sbjct: 261 MTMTKVMRRLAGASRWTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCK-ERSVKRARGVFQ 319

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            ++  + PD +SF  L+ GW K   ++EA  T  EM ++  ++P  V+ Y + +      
Sbjct: 320 ELRGTIPPDENSFNTLVHGWCKARMLKEALDTMEEM-KQHGFSPS-VVTYTSLVEAYCME 377

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
           K        L  M+   C P +  ++  +  L K   +  A+  +D +   G  + P+  
Sbjct: 378 KDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDG--VAPDAS 435

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            YN++I +L     +++ +   ++M   G  P+  T+N +      + +     K   +M
Sbjct: 436 FYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKM 495

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
            +    P        + +       +I + +  ++    I P  ++   L+  L   G++
Sbjct: 496 EEQSCNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKV 555

Query: 448 SDVRRFAEEMLNRRIL----IYEVTMHKLKKAFYNESRSMRDIFDSLE 491
           +    F EEM+++        +++ M KL+K      R+++ ++  ++
Sbjct: 556 AQSCLFLEEMVSKGFAPKQETFDLVMEKLEK------RNLQSVYKKIQ 597


>gi|115463377|ref|NP_001055288.1| Os05g0355200 [Oryza sativa Japonica Group]
 gi|55168028|gb|AAV43896.1| unknown protein [Oryza sativa Japonica Group]
 gi|55168069|gb|AAV43937.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578839|dbj|BAF17202.1| Os05g0355200 [Oryza sativa Japonica Group]
          Length = 632

 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 110/469 (23%), Positives = 198/469 (42%), Gaps = 21/469 (4%)

Query: 41  PTHLDAPYISSSARIICEILAHASSD-------DIESALACTGIIPTPDLVHEVLQLSYD 93
           P H D+ +     R+   I    ++         +E+AL       +  LV  VL     
Sbjct: 136 PAHADSSHPEHVGRVCAAIADVVAAGAGAGADASLEAALTALSPPLSETLVLAVLDRFKH 195

Query: 94  SPSSAVDFFRWA------GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSL 147
           +   +  FFRWA        G   +   +  MV +LGK  +F+ M   ++ M ++G L +
Sbjct: 196 AHRPSHRFFRWAAAAAAASGGFAHTTITYCKMVHILGKARQFQSMVALIQEMGKEGALCM 255

Query: 148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN 207
             F     S+  AG+   AV  F++M  HG +  V + N LL A+  QE     A +  +
Sbjct: 256 DAFKIAIKSFAAAGEIKNAVGVFEMMRTHGFDDGVESFNCLLVALA-QEGLGREANQVFD 314

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           R++    PD  S+  L+  W    N+ EA + + EM+E     P+ V+ + T +  L+RG
Sbjct: 315 RMRDRYAPDLRSYTALMLAWCNARNLVEAGRVWNEMLEN-GLKPD-VVVHNTMIEGLLRG 372

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
           ++  EA+K   +MK +   P +  ++  +    K      A++ ++ M  +G    P++ 
Sbjct: 373 QRRPEAVKMFELMKAKGPAPNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDVG--CQPDVA 430

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            Y  ++    N   +D V    ++M   G  PD  TYN + + L       +  + + +M
Sbjct: 431 TYTCLLVGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNALIKLLTNRNMPDDAARIYKKM 490

Query: 388 IKNEWQPTPLNCATAI-TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 446
           IK   +PT       + +  L      +   +W  +   GI P   S    + G    GR
Sbjct: 491 IKKGLEPTIHTYNMMMKSYFLGGRNYMMGCAVWEEMHRKGICPDVNSYTVFINGHIRHGR 550

Query: 447 LSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCK 495
             +  ++ EEM+ + +   ++  +K    F    +   DI   L ++ K
Sbjct: 551 PEEACKYIEEMIQKGMKTPQIDYNKFAADFSKAGKP--DILYELAQKVK 597


>gi|357115308|ref|XP_003559432.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Brachypodium distachyon]
          Length = 570

 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 113/478 (23%), Positives = 209/478 (43%), Gaps = 20/478 (4%)

Query: 14  NKIIPSSSSTTTSPTSHNPHRPTRPRFPTHLDAPY---ISSSARIICEILAHASSDDIES 70
           + ++  S  + + P S  P  P      +H +A +   I   +RI+    A  S + I  
Sbjct: 61  DPVVERSHGSVSKPLSILPGCPAPA---SHEEAEFEADIDEVSRILSSHFA--SPEAIVI 115

Query: 71  ALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYA--WNLMVDVLGKNGR 128
           A+ C  +  +  +V ++L+       +A  FF WAG  +    +A  +NLMVD+LGK  +
Sbjct: 116 AMDCCPVRVSGRMVDKILRRFGSDWVAAFGFFMWAGAQEGYCHHADLYNLMVDILGKFKQ 175

Query: 129 FEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS 187
           F+ +W  +R M E G L SL T   +     GA ++ +A+ +F+ M   GV +D  A+N+
Sbjct: 176 FDLLWGLIRQMDEIGCLVSLATMTKVMRRLAGANRWTDAIDAFNKMDQFGVVRDTKAMNA 235

Query: 188 LLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF 247
           LL  +C+ E    RA      ++ +V PD  SF  L+ GW +   + EA  T  EM E  
Sbjct: 236 LLDTLCK-EKSVKRARGVFQELRGVVPPDESSFNTLVHGWCQARMLNEARDTMKEM-EEH 293

Query: 248 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 307
            ++P  V+ Y + +      K        L  M  + C P +  ++  +  L K   +  
Sbjct: 294 GFSPS-VITYTSLIEAYCMEKDFQTVYAILNEMCSKGCRPNVITYTIVMHALGKAGRTQE 352

Query: 308 AVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMI 367
           A+ ++D +   G   +P+   YN++I +L     +++    FD+M   G  P    +N +
Sbjct: 353 ALDVFDKVKRDG--CVPDASFYNSIIYILGRAGRLEDANSVFDEMCRTGIPPTVAIFNTM 410

Query: 368 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 427
                 + +     K   +M +   +P        + +       +I   +  ++    I
Sbjct: 411 ISAACDHSQAENALKILVKMEEQSCKPDIKTYTPLLKLCCKRQWMKILPFLICHMFRKDI 470

Query: 428 LPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL----IYEVTMHKLKKAFYNESR 481
            P  ++   L+  L   G+ +    F EEM+ +  +     +++ M KL K   + ++
Sbjct: 471 SPDFSTYILLVTWLCRNGKPAQSCLFLEEMVLKGFMPKQETFDLVMEKLDKGNLHSAK 528



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/253 (22%), Positives = 114/253 (45%), Gaps = 12/253 (4%)

Query: 134 NAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI 192
           + ++ M+E G   S+ T+ S+ ++YC    +       + M   G   +V+    ++ A+
Sbjct: 285 DTMKEMEEHGFSPSVITYTSLIEAYCMEKDFQTVYAILNEMCSKGCRPNVITYTIVMHAL 344

Query: 193 CRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
             +  +T  AL+  ++VK+    PD   +  ++    + G +E+AN  F EM       P
Sbjct: 345 -GKAGRTQEALDVFDKVKRDGCVPDASFYNSIIYILGRAGRLEDANSVFDEMCR--TGIP 401

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
             V  + T +       Q + ALK L  M+ ++C P +K ++     L+KL      +++
Sbjct: 402 PTVAIFNTMISAACDHSQAENALKILVKMEEQSCKPDIKTYTP----LLKLCCKRQWMKI 457

Query: 312 WDIMVGIGF--NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFE 369
              ++   F  ++ P+   Y  ++  LC N        F ++MV  G  P   T++++ E
Sbjct: 458 LPFLICHMFRKDISPDFSTYILLVTWLCRNGKPAQSCLFLEEMVLKGFMPKQETFDLVME 517

Query: 370 CLIKNKRVHEVEK 382
            L K   +H  +K
Sbjct: 518 KLDKGN-LHSAKK 529


>gi|108711050|gb|ABF98845.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215693326|dbj|BAG88708.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625789|gb|EEE59921.1| hypothetical protein OsJ_12549 [Oryza sativa Japonica Group]
          Length = 554

 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 111/468 (23%), Positives = 208/468 (44%), Gaps = 23/468 (4%)

Query: 34  RPTRPRFPTHLDAPY---ISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQL 90
           RP  P   +H DA +   I   +RI+    A  S + I  A+ C  +  T  LV ++L  
Sbjct: 84  RPGFPATASHEDAEFEADIDEVSRILSARFA--SPEAIMIAMDCCSVRVTGCLVDKILTR 141

Query: 91  SYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE-DGVLSL 147
             +   +A  FF W G   G      +++LMVD+LGK  +F+ MW  +  M E  G++SL
Sbjct: 142 FSNDWVAAFGFFMWVGTQGGYCHCADSYDLMVDILGKFKQFDLMWGLINQMVEVGGLMSL 201

Query: 148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN 207
            T   +     GA ++ EA+ +F  M   GV +D  A+N LL  +C+ E    RA     
Sbjct: 202 MTMTKVMRRLAGASRWTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCK-ERSVKRARGVFQ 260

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            ++  + PD +SF  L+ GW K   ++EA  T  EM ++  ++P  V+ Y + +      
Sbjct: 261 ELRGTIPPDENSFNTLVHGWCKARMLKEALDTMEEM-KQHGFSPS-VVTYTSLVEAYCME 318

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
           K        L  M+   C P +  ++  +  L K   +  A+  +D +   G  + P+  
Sbjct: 319 KDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDG--VAPDAS 376

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            YN++I +L     +++ +   ++M   G  P+  T+N +      + +     K   +M
Sbjct: 377 FYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKM 436

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
            +    P        + +       +I + +  ++    I P  ++   L+  L   G++
Sbjct: 437 EEQSCNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKV 496

Query: 448 SDVRRFAEEMLNRRIL----IYEVTMHKLKKAFYNESRSMRDIFDSLE 491
           +    F EEM+++        +++ M KL+K      R+++ ++  ++
Sbjct: 497 AQSCLFLEEMVSKGFAPKQETFDLVMEKLEK------RNLQSVYKKIQ 538


>gi|226509960|ref|NP_001150456.1| LOC100284086 [Zea mays]
 gi|195639404|gb|ACG39170.1| ATP binding protein [Zea mays]
          Length = 634

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 103/443 (23%), Positives = 195/443 (44%), Gaps = 10/443 (2%)

Query: 56  ICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA--GRGQRLSP 113
           I +++A  +  ++E+AL+         +V  VL     +   +  FFRWA    G   + 
Sbjct: 169 IADVVASGADANLEAALSALSPPLCEAVVLAVLHRFKHAHRPSYRFFRWATVSGGFTHTT 228

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
             +  M+ +LGK  +FE M   ++ M + G LS+  F     S+  AG+   AV  F++M
Sbjct: 229 ITYCKMLHILGKTRQFESMVAMIQEMGKAGALSMDAFKVAIKSFAAAGEIKNAVGVFELM 288

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
             +G +  V + N LL A+ + E     A +  +++     PD  S+  L+  W    N+
Sbjct: 289 RKNGFDDGVESFNCLLVALAK-EGLGREARQVFDKMHGQYSPDLRSYTALMLAWCNARNL 347

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            EA + + EM+E+   +P+ V+ + T +  L+RG++  EA+K   +MK +   P +  ++
Sbjct: 348 VEAGRVWNEMLEK-GMDPD-VVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPPPNVWTYT 405

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +    K      A++ ++ M        P++  Y  ++    N   +D V    ++M 
Sbjct: 406 MLIRDHCKQGKMDMAMECFEEMQEA--KCQPDVATYTCLLVGYGNAKQMDRVTAVLEEMT 463

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP- 412
             G  PD+ TYN + + L       +  + + +MIK   +PT       +      D   
Sbjct: 464 QKGCPPDARTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFVGDSNY 523

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
            +   +W  + + GI P   S    +      GR  +  ++ EEM+N+ +   ++  +K 
Sbjct: 524 AMGCAVWEEMHQRGICPDVNSYTVFINRHIRHGRPEEAYKYIEEMINKGMKAPQIDYNKF 583

Query: 473 KKAFYNESRSMRDIFDSLERRCK 495
              F    +   DI   L ++ K
Sbjct: 584 AADFSKAGKP--DILFELAQKVK 604


>gi|21686921|gb|AAK71569.2|AC087852_29 putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 1833

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 111/468 (23%), Positives = 209/468 (44%), Gaps = 23/468 (4%)

Query: 34   RPTRPRFPTHLDAPY---ISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQL 90
            RP  P   +H DA +   I   +RI+    A  S + I  A+ C  +  T  LV ++L  
Sbjct: 1363 RPGFPATASHEDAEFEADIDEVSRILSARFA--SPEAIMIAMDCCSVRVTGCLVDKILTR 1420

Query: 91   SYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE-DGVLSL 147
              +   +A  FF W G   G      +++LMVD+LGK  +F+ MW  +  M E  G++SL
Sbjct: 1421 FSNDWVAAFGFFMWVGTQGGYCHCADSYDLMVDILGKFKQFDLMWGLINQMVEVGGLMSL 1480

Query: 148  PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN 207
             T   +     GA ++ EA+ +F  M   GV +D  A+N LL  +C+ E    RA     
Sbjct: 1481 MTMTKVMRRLAGASRWTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCK-ERSVKRARGVFQ 1539

Query: 208  RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
             ++  + PD +SF  L+ GW K   ++EA  T  EM ++  ++P  V+ Y + +      
Sbjct: 1540 ELRGTIPPDENSFNTLVHGWCKARMLKEALDTMEEM-KQHGFSPS-VVTYTSLVEAYCME 1597

Query: 268  KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
            K        L  M+   C P +  ++  +  L K   +  A+  +D +   G  + P+  
Sbjct: 1598 KDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDG--VAPDAS 1655

Query: 328  MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
             YN++I +L     +++ +   ++M   G  P+  T+N +      + +     K   +M
Sbjct: 1656 FYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKM 1715

Query: 388  IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
             +    P        + +       +I + +  ++    I P  ++   L+  L   G++
Sbjct: 1716 EEQSCNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKV 1775

Query: 448  SDVRRFAEEMLNR----RILIYEVTMHKLKKAFYNESRSMRDIFDSLE 491
            +    F EEM+++    +   +++ M KL+K      R+++ ++  ++
Sbjct: 1776 AQSCLFLEEMVSKGFAPKQETFDLVMEKLEK------RNLQSVYKKIQ 1817


>gi|218193742|gb|EEC76169.1| hypothetical protein OsI_13484 [Oryza sativa Indica Group]
          Length = 1874

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 111/468 (23%), Positives = 209/468 (44%), Gaps = 23/468 (4%)

Query: 34   RPTRPRFPTHLDAPY---ISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQL 90
            RP  P   +H DA +   I   +RI+    A  S + I  A+ C  +  T  LV ++L  
Sbjct: 1404 RPGFPATASHEDAEFEADIDEVSRILSARFA--SPEAIMIAMDCCSVRVTGCLVDKILTR 1461

Query: 91   SYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE-DGVLSL 147
              +   +A  FF W G   G      +++LMVD+LGK  +F+ MW  +  M E  G++SL
Sbjct: 1462 FSNDWVAAFGFFMWVGTQGGYCHCADSYDLMVDILGKFKQFDLMWGLINQMVEVGGLMSL 1521

Query: 148  PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN 207
             T   +     GA ++ EA+ +F  M   GV +D  A+N LL  +C+ E    RA     
Sbjct: 1522 MTMTKVMRRLAGASRWTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCK-ERSVKRARGVFQ 1580

Query: 208  RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
             ++  + PD +SF  L+ GW K   ++EA  T  EM ++  ++P  V+ Y + +      
Sbjct: 1581 ELRGTIPPDENSFNTLVHGWCKARMLKEALDTMEEM-KQHGFSPS-VVTYTSLVEAYCME 1638

Query: 268  KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
            K        L  M+   C P +  ++  +  L K   +  A+  +D +   G  + P+  
Sbjct: 1639 KDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDG--VAPDAS 1696

Query: 328  MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
             YN++I +L     +++ +   ++M   G  P+  T+N +      + +     K   +M
Sbjct: 1697 FYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKM 1756

Query: 388  IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
             +    P        + +       +I + +  ++    I P  ++   L+  L   G++
Sbjct: 1757 EEQSCNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKV 1816

Query: 448  SDVRRFAEEMLNR----RILIYEVTMHKLKKAFYNESRSMRDIFDSLE 491
            +    F EEM+++    +   +++ M KL+K      R+++ ++  ++
Sbjct: 1817 AQSCLFLEEMVSKGFAPKQETFDLVMEKLEK------RNLQSVYKKIQ 1858


>gi|125551971|gb|EAY97680.1| hypothetical protein OsI_19602 [Oryza sativa Indica Group]
          Length = 586

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 106/450 (23%), Positives = 191/450 (42%), Gaps = 19/450 (4%)

Query: 41  PTHLDAPYISSSARIICEILAHASSD-------DIESALACTGIIPTPDLVHEVLQLSYD 93
           P H D+ +     R+   I    ++         +E+AL       +  LV  VL     
Sbjct: 136 PAHADSSHPEHVGRVCAAIADVVAAGAGAGADASLEAALTALSPPLSETLVLAVLDRFKH 195

Query: 94  SPSSAVDFFRWA------GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSL 147
           +   +  FFRWA        G   +   +  MV +LGK  +F+ M   ++ M ++G L +
Sbjct: 196 AHRPSHRFFRWAAAAAAASGGFAHTTITYCKMVHILGKARQFQSMVALIQEMGKEGALCM 255

Query: 148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN 207
             F     S+  AG+   AV  F++M  HG +  V + N LL A+  QE     A +  +
Sbjct: 256 DAFKIAIKSFAAAGEIKNAVGVFEMMRTHGFDDGVESFNCLLVALA-QEGLGREANQVFD 314

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           R++    PD  S+  L+  W    N+ EA + + EM+E     P+ V+ + T +  L+RG
Sbjct: 315 RMRDRYAPDLRSYTALMLAWCNARNLVEAGRVWNEMLEN-GLKPD-VVVHNTMIEGLLRG 372

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
           ++  EA+K   +MK +   P +  ++  +    K      A++ ++ M  +G    P++ 
Sbjct: 373 QRRPEAVKMFELMKAKGPAPNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDVG--CQPDVA 430

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            Y  ++    N   +D V    ++M   G  PD  TYN + + L       +  + + +M
Sbjct: 431 TYTCLLVGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNALIKLLTNRNMPDDAARIYKKM 490

Query: 388 IKNEWQPTPLNCATAI-TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 446
           IK   +PT       + +  L      +   +W  +   GI P   S    + G    GR
Sbjct: 491 IKKGLEPTIHTYNMMMKSYFLGGRNYMMGCAVWEEMHRKGICPDVNSYTVFINGHIRHGR 550

Query: 447 LSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
             +  ++ EEM+ + +   ++  +K    F
Sbjct: 551 PEEACKYIEEMIQKGMKTPQIDYNKFAADF 580


>gi|297839201|ref|XP_002887482.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333323|gb|EFH63741.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 490

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 117/451 (25%), Positives = 194/451 (43%), Gaps = 39/451 (8%)

Query: 66  DDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLS--PYAWNLMVDVL 123
           DD+E AL  + +  T  +V ++LQ       +A  FF WAG  +  S  P A+N M+D+L
Sbjct: 8   DDMEKALDDSVVDLTTPVVCKILQRLQYEEKTAFRFFTWAGHQEHYSHEPIAYNEMIDIL 67

Query: 124 G----KNGRFEQMWNAVRVMKEDGVLSLPT--FASIFDSYCGAGKYDEAVMSFDVMSMHG 177
                KN +F  + + +  MK +    +P      I   YC   +Y   V  F       
Sbjct: 68  SSTKYKNKQFRIVIDMLDYMKRNKKTVVPADILLEILRKYCE--RYLTHVQKFAKRKRIR 125

Query: 178 VEQ--DVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEE 235
           V+   ++ A N LL A+C+           L R++  V PD  +F +L  GW +  + ++
Sbjct: 126 VKTQPEINAFNMLLDALCKC-GLVKEGEALLRRMRHRVKPDATTFNVLFFGWCRVRDPKK 184

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF---PTLKFF 292
           A K   EM++     PE+   Y   + T  +   VDEA      M  +      PT K F
Sbjct: 185 AMKLLEEMIQAGH-KPEN-FTYCAAIDTFCQAGMVDEAADLFEFMITKGSVVSAPTAKTF 242

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  +  L K + +    +L   M+  G   +P++  Y  VI  +C    V+  ++F D+M
Sbjct: 243 ALMIVALAKNDKAEECFELIGRMISTG--CLPDVSTYKDVIEGMCMAGKVEEAYKFLDEM 300

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
              G  PD +TYN     L +N++  E  K +  M+++   P+       I+M  + D+P
Sbjct: 301 SNKGYPPDIVTYNCFLRVLCENRKSDEALKLYGRMVESRCAPSVQTYNMLISMFFEMDDP 360

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI-LIYEV---- 467
           + A   W  + E   +    +   ++ GL +  R  +     EE++N+ + L Y      
Sbjct: 361 DGAFNTWKEMDERDCVQDIETYCVMINGLFDCHRAKEACFLLEEVVNKGLKLPYRAFDSF 420

Query: 468 -----------TMHKLK---KAFYNESRSMR 484
                       +HKL    K FYN S + R
Sbjct: 421 LMRLSTVGNLKAIHKLSEHMKKFYNHSMARR 451


>gi|449466251|ref|XP_004150840.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Cucumis sativus]
          Length = 495

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 104/445 (23%), Positives = 201/445 (45%), Gaps = 24/445 (5%)

Query: 59  ILAHASSDDIESALACTGIIPTPDLVHEVLQ---LSYDSPSSAVDFFRWAG--RGQRLSP 113
           I   +SS D++ +L  + +  + +L+  VL+    S+ +P  A++FF +    RG   + 
Sbjct: 49  ITTSSSSTDMKHSLESSRVFLSNELIDGVLKRVRFSHGNPLQALEFFNYTAKRRGFYHTS 108

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVR--VMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
           ++ + M+ +LG++ +F+++W+ +     K+  ++SL T   +           + V SF 
Sbjct: 109 FSVDTMLYILGRSRKFDKIWDVLLDVKFKDPSLISLRTVMVVLGRIAKVCSVRQTVESFR 168

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
                  E DV   N+LL  +C QE     A    + +K +  P+  +F ILL GW+   
Sbjct: 169 KFKKFVPEFDVTCFNALLRTLC-QEKSMMDARNVYHGLKSMFRPNLQTFNILLSGWKSS- 226

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
             EEA   F EM+E     P+ V++Y   +    + +++D+A K +  M+ E+    +  
Sbjct: 227 --EEAEGFFDEMIE-MGVKPD-VVSYNCLVDVYCKNREMDKAFKVVGKMRDEDIPADVIT 282

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           +++ +  L  +     A  +   M   G    P++  YNA I   C    +   F   D+
Sbjct: 283 YTSIIGGLGLVGQPDKARNILKEMKEYG--CYPDVAAYNATIRNFCIAKRLHEAFDLLDE 340

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           MV  G  P++ TYN+ F     +  +      +  M+     P   +C   + +    ++
Sbjct: 341 MVNKGLSPNATTYNLFFRIFFWSNDLQSAWNLYRRMMDTGCLPNTQSCLFLVRLFKKYEK 400

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK 471
            E+A+E+WN +++ G       + EL   L +LG+L +      +M+++       +  +
Sbjct: 401 EEMALELWNDMIQKGFGSYILVSEELFDLLCDLGKLIEAESCFLQMVDKGHKPSYTSFKR 460

Query: 472 LK---------KAFYNESRSMRDIF 487
           +K         +A  N S+ M DIF
Sbjct: 461 IKVLMELANKHEALQNLSKKMDDIF 485


>gi|186495472|ref|NP_177628.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|133778904|gb|ABO38792.1| At1g74900 [Arabidopsis thaliana]
 gi|332197524|gb|AEE35645.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 453

 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 102/397 (25%), Positives = 181/397 (45%), Gaps = 15/397 (3%)

Query: 72  LACTGIIP-TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPY---AWNLMVDVLGKNG 127
           L  T   P TP+LV+ VL+  ++    A+ FF +     R   +   +++L +D+  +  
Sbjct: 46  LLSTKTTPWTPNLVNSVLKRLWNHGPKALQFFHFLDNHHREYVHDASSFDLAIDIAARLH 105

Query: 128 RFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN 186
               +W+ +  M+   +   P TFA + + Y  AGK D+AV  F  M  HG  QD+ + N
Sbjct: 106 LHPTVWSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFN 165

Query: 187 SLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
           ++L  +C+ + +  +A E    ++     D  ++ ++L GW       +A +   EMVER
Sbjct: 166 TILDVLCKSK-RVEKAYELFRALRGRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVER 224

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
              NP ++  Y T L    R  Q+  A +F   MK  +C   +  ++  +       +  
Sbjct: 225 -GINP-NLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIK 282

Query: 307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM 366
            A  ++D M+  G  ++P++  YNA+I +LC  D+V+N    F++MV  G  P+  TYN+
Sbjct: 283 RARNVFDEMIREG--VLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNV 340

Query: 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 426
           +   L         E+    M     +P        I    +  E E A+ ++  +    
Sbjct: 341 LIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGD 400

Query: 427 ILPLEASANELLVGLRNLGRLSDV-----RRFAEEML 458
            LP   + N L+ G+    R  D+     + FA+E+L
Sbjct: 401 CLPNLDTYNILISGMFVRKRSEDMVVAGNQAFAKEIL 437



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 113/257 (43%), Gaps = 10/257 (3%)

Query: 205 FLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT 263
            ++R++ + + P   +FAI+ E +   G  ++A K F  M E   +  + + ++ T L  
Sbjct: 113 LIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCF--QDLASFNTILDV 170

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLM 323
           L + K+V++A +  R ++G     T+ + +  L+    +  +  A+++   MV  G N  
Sbjct: 171 LCKSKRVEKAYELFRALRGRFSVDTVTY-NVILNGWCLIKRTPKALEVLKEMVERGIN-- 227

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           PNL  YN ++        + + + FF +M       D +TY  +         +      
Sbjct: 228 PNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNV 287

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
           F EMI+    P+       I +L   D  E A+ ++  ++  G  P   + N L+ GL +
Sbjct: 288 FDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFH 347

Query: 444 LGRLSDVRRFAEEMLNR 460
            G  S      EE++ R
Sbjct: 348 AGEFSR----GEELMQR 360



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 64/154 (41%), Gaps = 7/154 (4%)

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
           D   + F  M  HG F D  ++N I + L K+KRV +  + F   ++  +    +     
Sbjct: 143 DKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELF-RALRGRFSVDTVTYNVI 201

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR-- 460
           +           A+E+   ++E GI P   + N +L G    G++     F  EM  R  
Sbjct: 202 LNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDC 261

Query: 461 --RILIYEVTMHKLKKAFYNESRSMRDIFDSLER 492
              ++ Y   +H    A   E +  R++FD + R
Sbjct: 262 EIDVVTYTTVVHGFGVA--GEIKRARNVFDEMIR 293


>gi|242087579|ref|XP_002439622.1| hypothetical protein SORBIDRAFT_09g017100 [Sorghum bicolor]
 gi|241944907|gb|EES18052.1| hypothetical protein SORBIDRAFT_09g017100 [Sorghum bicolor]
          Length = 657

 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 106/433 (24%), Positives = 189/433 (43%), Gaps = 12/433 (2%)

Query: 67  DIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA--GRGQRLSPYAWNLMVDVLG 124
           ++E+AL+         +V  VL     +   +  FFRWA    G   +   +  M+ +LG
Sbjct: 182 NLEAALSALSPPLCEAVVLAVLHRFKHAHRPSYRFFRWATASGGFTHTTITYCKMLHILG 241

Query: 125 KNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVA 184
           K  +FE M   ++ M + G LS+  F     S+  AG+   AV  F++M  +G +  V +
Sbjct: 242 KTRQFEMMVAIIQEMGKVGALSMDAFKVAIKSFAAAGEIKNAVGVFELMKKNGFDDGVES 301

Query: 185 VNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244
            N LL A+   E     A +  +++     PD  S+  L+  W    N+ EA + + EM+
Sbjct: 302 FNCLLVALA-NEGLGREARQVFDKMHGQYSPDLRSYTALMLAWCNARNLVEAGRVWNEML 360

Query: 245 ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 304
           E+    P+ V+ + T +  L+RG++  EALK   +MK +   P +  ++  +    K   
Sbjct: 361 EK-GMKPD-VVVHNTMIEGLLRGQRRPEALKMFELMKAKGPPPNVWTYTMLIRDHCKRGK 418

Query: 305 STHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTY 364
              A++ ++ M        P++  Y  ++    N   +D V    ++M   G  PD+ TY
Sbjct: 419 MDMAMECFEEMQEA--RCQPDVATYTCLLVGYGNAKRMDRVTAVLEEMTQKGCPPDARTY 476

Query: 365 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPT--PLNCATAITMLLDADEPEIAIEIWNYI 422
           N + + L   K   +  + + +MIK   +PT    N       L D +   +   +W  +
Sbjct: 477 NALIKLLTNRKMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFLGDRNY-AMGCAVWEEM 535

Query: 423 LENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 482
              GI P   S    + G    GR  +  ++ EEM+N+ +   ++  +K    F    + 
Sbjct: 536 HRRGICPDVNSYTVFINGHIRHGRPEEAYKYIEEMINKGMTAPQIDYNKFAADFSKAGKP 595

Query: 483 MRDIFDSLERRCK 495
             DI   L  + K
Sbjct: 596 --DILYELALKVK 606


>gi|356544698|ref|XP_003540784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Glycine max]
          Length = 495

 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 107/412 (25%), Positives = 180/412 (43%), Gaps = 15/412 (3%)

Query: 40  FPTHLDAPYISSSAR-----IICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDS 94
           FP   +A  I+ S        I +++  +    +  AL    I  TPDLV++V++  ++ 
Sbjct: 23  FPLPRNAVTIADSVEHPSDATIAKLVLESDPRTVSEALTKPTIQWTPDLVNKVMKRLWNH 82

Query: 95  PSSAVDFFRWAGRGQ---RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TF 150
              A+ FF+   R       SP +++  VD+  +   F   W  V  M+   +   P T 
Sbjct: 83  GPKALQFFKHLDRHHPSYTHSPSSFDHAVDIAARMRDFNSAWALVGRMRSLRLGPSPKTL 142

Query: 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK 210
           A + + Y   GK   AV +F  M+ HG+ QD+ + N+LL  +C+ + +   A   L  + 
Sbjct: 143 AILAERYASNGKPHRAVRTFLSMAEHGIRQDLHSFNTLLDILCKSK-RVETAHSLLKTLT 201

Query: 211 KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270
               PD  ++ IL  G+        A +   EMV+R    P  V  Y T L    R  Q+
Sbjct: 202 SRFRPDTVTYNILANGYCLIKRTPMALRVLKEMVQR-GIEPTMV-TYNTMLKGYFRSNQI 259

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYN 330
            EA +F   MK   C   +  ++  +       D   A +++  MV  G  ++PN+  YN
Sbjct: 260 KEAWEFYLEMKKRKCEIDVVTYTTVIHGFGVAGDVKKAKRVFHEMVKEG--VVPNVATYN 317

Query: 331 AVIGLLCNNDDVDNVFRFFDQMVFHG-AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389
           A+I +LC  D V+N    F++M   G   P+ +TYN++   L     +     F   M +
Sbjct: 318 ALIQVLCKKDSVENAVVVFEEMAREGVCVPNVVTYNVVIRGLCHVGDMERALGFMERMGE 377

Query: 390 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 441
           +  +         I    DA E E A+E++  + +   LP   + N L+  +
Sbjct: 378 HGLRACVQTYNVVIRYFCDAGEVEKALEVFGKMGDGSCLPNLDTYNVLISAM 429



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 102/443 (23%), Positives = 179/443 (40%), Gaps = 61/443 (13%)

Query: 33  HRPTRPRFPTHLD---APYISSSARIICEILAHASSDDIESALACTG------IIPTPDL 83
           H P   +F  HLD     Y  S +     +   A   D  SA A  G      + P+P  
Sbjct: 82  HGPKALQFFKHLDRHHPSYTHSPSSFDHAVDIAARMRDFNSAWALVGRMRSLRLGPSPKT 141

Query: 84  VHEVLQLSYDS---PSSAV-DFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM 139
           +  +L   Y S   P  AV  F   A  G R   +++N ++D+L K+ R E   + ++ +
Sbjct: 142 L-AILAERYASNGKPHRAVRTFLSMAEHGIRQDLHSFNTLLDILCKSKRVETAHSLLKTL 200

Query: 140 KEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQT 199
                    T+  + + YC   +   A+     M   G+E  +V  N++L    R  NQ 
Sbjct: 201 TSRFRPDTVTYNILANGYCLIKRTPMALRVLKEMVQRGIEPTMVTYNTMLKGYFRS-NQI 259

Query: 200 SRALEF-LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYE 258
             A EF L   K+  + D  ++  ++ G+   G+V++A + F EMV+             
Sbjct: 260 KEAWEFYLEMKKRKCEIDVVTYTTVIHGFGVAGDVKKAKRVFHEMVK------------- 306

Query: 259 TFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI 318
                                   E   P +  ++  + +L K +   +AV +++ M   
Sbjct: 307 ------------------------EGVVPNVATYNALIQVLCKKDSVENAVVVFEEMARE 342

Query: 319 GFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVH 378
           G   +PN++ YN VI  LC+  D++    F ++M  HG      TYN++         V 
Sbjct: 343 GV-CVPNVVTYNVVIRGLCHVGDMERALGFMERMGEHGLRACVQTYNVVIRYFCDAGEVE 401

Query: 379 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE---IAIEIWNYILENGILPLEASAN 435
           +  + F +M      P        I+ +    + E   +A ++   +++ G LP + + N
Sbjct: 402 KALEVFGKMGDGSCLPNLDTYNVLISAMFVRKKSEDLVVAGKLLMDMVDRGFLPRKFTFN 461

Query: 436 ELLVGLRNLGRLSDVRRFAEEML 458
            +L GL   G     + FA+E+L
Sbjct: 462 RVLNGLVITGN----QDFAKEIL 480


>gi|255548349|ref|XP_002515231.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545711|gb|EEF47215.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 505

 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 195/409 (47%), Gaps = 15/409 (3%)

Query: 59  ILAHASSDDIESALACTGIIPTPDLVHEVLQ---LSYDSPSSAVDFFRWAG--RGQRLSP 113
           I + +S  +++ +L  TGI  + DL+ +VL+    S+ +P  A++FF +    +G   +P
Sbjct: 46  ITSSSSVQNLKQSLTSTGIFLSNDLIDKVLKRVRFSHGNPLQALEFFYYTDNRKGFYHTP 105

Query: 114 YAWNLMVDVLGKNGRFEQMWNA-VRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFD 171
           Y+ + ++ +LG++ +F+ +W+  +++ ++D  L  P T   +           + V SF 
Sbjct: 106 YSLDTILYILGRSRKFDHIWDVLIKMKRKDRFLISPRTMQIVLARVAKLCSVRQTVESFR 165

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
                    D    N+LL  +C QE   + A    +R+KK   P+  +F ILL GW++  
Sbjct: 166 KFKKFVSVLDTTCFNALLRTLC-QEKSMTDARNVYHRLKKEFKPNLQTFNILLSGWKQS- 223

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
             EEA   F EM E     P+ V++Y + +    + +++++A K +  M+ E+  P +  
Sbjct: 224 --EEAELFFEEMRE-LGIKPD-VVSYNSLIDVYCKDREMEKAYKVVEKMREEDISPDVIT 279

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           +++ +  L  +     A  + + M   G    P++  YNAVI   C    + +     D+
Sbjct: 280 YTSIIGGLGLVGQPDKARDILNEMKEYG--CYPDVAAYNAVIRNYCIAKRLGDASNLMDE 337

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M   G  P++ TYN+ F     +  +      +  M+++   P   +C   I +    ++
Sbjct: 338 MASKGLSPNATTYNLFFRVFYWSNDLRNSWSLYRRMMESGCLPNTQSCMFLIRLFRKHEK 397

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
            E+A+ +WN ++E G       ++ L   L ++G+L +  +   +M+ +
Sbjct: 398 VEMALTLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKCFLQMIEK 446



 Score = 45.8 bits (107), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 70/154 (45%), Gaps = 3/154 (1%)

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           PNL  +N ++     +++ +    FF++M   G  PD ++YN + +   K++ + +  K 
Sbjct: 208 PNLQTFNILLSGWKQSEEAE---LFFEEMRELGIKPDVVSYNSLIDVYCKDREMEKAYKV 264

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
             +M + +  P  +   + I  L    +P+ A +I N + E G  P  A+ N ++     
Sbjct: 265 VEKMREEDISPDVITYTSIIGGLGLVGQPDKARDILNEMKEYGCYPDVAAYNAVIRNYCI 324

Query: 444 LGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFY 477
             RL D     +EM ++ +     T +   + FY
Sbjct: 325 AKRLGDASNLMDEMASKGLSPNATTYNLFFRVFY 358


>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
 gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
          Length = 707

 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 95/384 (24%), Positives = 173/384 (45%), Gaps = 12/384 (3%)

Query: 89  QLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SL 147
           Q + D   + VD F  +G    +  Y+  ++ D L K GR ++ +  V+ M  +G   +L
Sbjct: 93  QQNVDRAKTLVDEFVSSGFVPDVVTYS--ILADGLCKRGRIDEAFELVKEMSGNGCTPNL 150

Query: 148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL- 206
            T+ ++ D  C A K ++A    + +   G   DVV    ++  +C+ E +  +AL+ + 
Sbjct: 151 VTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTYTIIVDGLCK-EGRLDKALKMVE 209

Query: 207 NRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
             +K+   P   ++  L+EG  + G V+EA+  F EMV +        LAY + +    +
Sbjct: 210 GMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSK--DCTADALAYVSLVNGYCK 267

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNL 326
             +  EA K +  ++G    P +  ++  +D   K         +++ M   G   +PN+
Sbjct: 268 SSRTKEAQKVVDGIRGT---PYIDVYNALMDGYCKEGRLDEIPNVFEDMACRG--CVPNI 322

Query: 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 386
             YN V+  LC +  VD  F F + M   G  PD ++YN+I + L K  +  E  +   +
Sbjct: 323 KTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQ 382

Query: 387 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 446
           MI+    P  +   T +      +  + A+ I   +++ G+ P   + N L+ GL    R
Sbjct: 383 MIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNR 442

Query: 447 LSDVRRFAEEMLNRRILIYEVTMH 470
           L D      EML    ++   T +
Sbjct: 443 LGDAYELMHEMLRNGCVVSACTTY 466



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/381 (23%), Positives = 158/381 (41%), Gaps = 65/381 (17%)

Query: 109 QRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           ++++P  + +N+++D L K  + ++    +  M + GV     TF SI D  C AGK++ 
Sbjct: 4   RKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFER 63

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD--------PDG 217
           A     VM+           N+L+S +C+Q+N        ++R K +VD        PD 
Sbjct: 64  AHSLLAVMAERNCRPSCCTYNTLISGLCKQQN--------VDRAKTLVDEFVSSGFVPDV 115

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            +++IL +G  K G                                     ++DEA + +
Sbjct: 116 VTYSILADGLCKRG-------------------------------------RIDEAFELV 138

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337
           + M G  C P L  ++  +D L K + +  A +L + +V  GF  +P+++ Y  ++  LC
Sbjct: 139 KEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGF--VPDVVTYTIIVDGLC 196

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
               +D   +  + M+  G  P  +TY  + E L +  RV E    F EM+  +     L
Sbjct: 197 KEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADAL 256

Query: 398 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
              + +     +   + A ++ + I      P     N L+ G    GRL ++    E+M
Sbjct: 257 AYVSLVNGYCKSSRTKEAQKVVDGIRGT---PYIDVYNALMDGYCKEGRLDEIPNVFEDM 313

Query: 458 LNR----RILIYEVTMHKLKK 474
             R     I  Y + M  L K
Sbjct: 314 ACRGCVPNIKTYNIVMDGLCK 334



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 92/380 (24%), Positives = 166/380 (43%), Gaps = 10/380 (2%)

Query: 104 WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGK 162
            A R  R S   +N ++  L K    ++    V      G V  + T++ + D  C  G+
Sbjct: 71  MAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGLCKRGR 130

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFA 221
            DEA      MS +G   ++V  N+L+  +C+  ++T +A E L   V     PD  ++ 
Sbjct: 131 IDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKA-SKTEKAYELLETLVSSGFVPDVVTYT 189

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           I+++G  KEG +++A K    M++R    P  V+ Y   +  L R  +VDEA    + M 
Sbjct: 190 IIVDGLCKEGRLDKALKMVEGMLKR-GCTPS-VITYTALMEGLCRTGRVDEAHHIFKEMV 247

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
            ++C      + + ++   K + +  A ++ D     G    P + +YNA++   C    
Sbjct: 248 SKDCTADALAYVSLVNGYCKSSRTKEAQKVVD-----GIRGTPYIDVYNALMDGYCKEGR 302

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
           +D +   F+ M   G  P+  TYN++ + L K+ +V E   F   M      P  ++   
Sbjct: 303 LDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNI 362

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461
            I  L  A +P+ A ++ + +++ GI P   + N L+       R  D     + M+   
Sbjct: 363 IIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAG 422

Query: 462 ILIYEVTMHKLKKAFYNESR 481
           +    VT + L       +R
Sbjct: 423 VDPDNVTYNTLISGLSQTNR 442



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 91/384 (23%), Positives = 160/384 (41%), Gaps = 8/384 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F   A RG   +   +N+++D L K+G+ ++ +  +  M   G +  + ++  I D    
Sbjct: 310 FEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFK 369

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
           A K  EA    D M   G+  D V  N+L++  C++E          N +K  VDPD  +
Sbjct: 370 ASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVT 429

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           +  L+ G  +   + +A +   EM+ R          Y T +  L +   + +AL  +  
Sbjct: 430 YNTLISGLSQTNRLGDAYELMHEML-RNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDH 488

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
           M G         ++  +D L K      A  L   M     + + + + Y  VI  LC  
Sbjct: 489 MTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEM-----DTLRDEVSYTTVIIGLCKA 543

Query: 340 DDVDNVFRFFDQMV-FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
           + +D   +   +MV   G    S T+N++ +   K KR+ E       M++    P+ + 
Sbjct: 544 EQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQRGCSPSVIT 603

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
               IT L   D+ + A E+++ +   GI+    S   L+ GL   GR  +  +  EEM 
Sbjct: 604 YNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMA 663

Query: 459 NRRILIYEVTMHKLKKAFYNESRS 482
           +    I ++   KL  A   + R 
Sbjct: 664 SSDCEIDDLKCRKLYLALRGQGRG 687



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 60/270 (22%), Positives = 120/270 (44%), Gaps = 4/270 (1%)

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
           V PD  ++ IL++G  K    ++A++   EMV+R    P+ V  + + +  L +  + + 
Sbjct: 6   VAPDVFTYNILIDGLCKASKTDKASEMLHEMVDR-GVTPDTV-TFNSIMDGLCKAGKFER 63

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAV 332
           A   L VM   NC P+   ++  +  L K  +   A  L D  V  GF  +P+++ Y+ +
Sbjct: 64  AHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGF--VPDVVTYSIL 121

Query: 333 IGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 392
              LC    +D  F    +M  +G  P+ +TYN + + L K  +  +  +    ++ + +
Sbjct: 122 ADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGF 181

Query: 393 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 452
            P  +     +  L      + A+++   +L+ G  P   +   L+ GL   GR+ +   
Sbjct: 182 VPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHH 241

Query: 453 FAEEMLNRRILIYEVTMHKLKKAFYNESRS 482
             +EM+++      +    L   +   SR+
Sbjct: 242 IFKEMVSKDCTADALAYVSLVNGYCKSSRT 271



 Score = 42.7 bits (99), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 66/149 (44%), Gaps = 9/149 (6%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           A +G  ++ + +NL++D   K  R ++    + +M + G   S+ T+  +    C   K 
Sbjct: 558 AVKGLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQRGCSPSVITYNMVITCLCKLDKV 617

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK----KIVDPDGDS 219
           D+A   FD M++ G+    V+   L+  +C Q  +   AL+ L  +     +I D     
Sbjct: 618 DKAWELFDEMAVRGIVASSVSYTVLIYGLCGQ-GRGKEALQVLEEMASSDCEIDDLKCRK 676

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFE 248
             + L G   +G  EEA +    M  + +
Sbjct: 677 LYLALRG---QGRGEEAAELLRRMTTKMD 702


>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
 gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
          Length = 1031

 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 162/357 (45%), Gaps = 10/357 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           ++++ D L K GR ++ +  V+ M   G   +L T+ ++ D  C A K ++A    + + 
Sbjct: 369 YSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLV 428

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFL-NRVKKIVDPDGDSFAILLEGWEKEGNV 233
             G   DVV    ++  +C+ E +  +AL+ +   +K+   P   ++  L+EG  + G V
Sbjct: 429 SSGFVPDVVTYTIIVDGLCK-EGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRV 487

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           +EA+  F EMV +        LAY + +    +  +  EA K +  ++G    P +  ++
Sbjct: 488 DEAHHIFKEMVSK--DCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGT---PYIDVYN 542

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +D   K         +++ M   G   +PN+  YN V+  LC +  VD  F F + M 
Sbjct: 543 ALMDGYCKEGRLDEIPNVFEDMACRG--CVPNIKTYNIVMDGLCKHGKVDEAFPFLESMH 600

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G  PD ++YN+I + L K  +  E  +   +MI+    P  +   T +      +  +
Sbjct: 601 SAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFD 660

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 470
            A+ I   +++ G+ P   + N L+ GL    RL D      EML    ++   T +
Sbjct: 661 DAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTY 717



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 105/398 (26%), Positives = 170/398 (42%), Gaps = 15/398 (3%)

Query: 81  PDLVHEVLQLSYDSPSSAVDFFRWAG-RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM 139
           P +V  VLQ   D P +A+ FF WAG RG + S +  N  +  L +NG  +++      M
Sbjct: 93  PAVVSRVLQRLKD-PQTAIVFFVWAGDRGFKHSTFTRNCFLQTLLENGSSDRIPAMFERM 151

Query: 140 KEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198
            + G      T+  +  S C   + D+A    D   + G + +V     L  A C+    
Sbjct: 152 LDAGYAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCK---- 207

Query: 199 TSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYE 258
           T R  + L   + I  PD  ++  ++ G  ++ + + A +   EM ER +  P+ V  Y 
Sbjct: 208 TGRLKDALEIFRNIPSPDAIAYNAIIHGHCRKNDCDGALEFLKEMNER-KVAPD-VFTYN 265

Query: 259 TFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI 318
             +  L +  + D+A + L  M      P    F++ +D L K      A  L  +M   
Sbjct: 266 ILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAE- 324

Query: 319 GFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVH 378
             N  P+   YN +I  LC   +VD      D+ V  G  PD +TY+++ + L K  R+ 
Sbjct: 325 -RNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRID 383

Query: 379 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 438
           E  +   EM      P  +   T I  L  A + E A E+   ++ +G +P   +   ++
Sbjct: 384 EAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIV 443

Query: 439 VGLRNLGRLSDVRRFAEEMLNR----RILIYEVTMHKL 472
            GL   GRL    +  E ML R     ++ Y   M  L
Sbjct: 444 DGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGL 481



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 166/379 (43%), Gaps = 10/379 (2%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKY 163
           A R  R S   +N ++  L K    ++  + V      G V  + T++ + D  C  G+ 
Sbjct: 323 AERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRI 382

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAI 222
           DEA      MS  G   ++V  N+L+  +C+  ++T +A E L   V     PD  ++ I
Sbjct: 383 DEAFELVKEMSGKGCTPNLVTYNTLIDGLCKA-SKTEKAYELLESLVSSGFVPDVVTYTI 441

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           +++G  KEG +++A K    M++R    P  V+ Y   +  L R  +VDEA    + M  
Sbjct: 442 IVDGLCKEGRLDKALKMVEGMLKR-GCTPS-VITYTALMEGLCRTGRVDEAHHIFKEMVS 499

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
           ++C      + + ++   K + +  A ++ D     G    P + +YNA++   C    +
Sbjct: 500 KDCTADALAYVSLVNGYCKSSRTKEAQKVVD-----GIRGTPYIDVYNALMDGYCKEGRL 554

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
           D +   F+ M   G  P+  TYN++ + L K+ +V E   F   M      P  ++    
Sbjct: 555 DEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNII 614

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
           I  L  A +P+ A ++ + +++ GI P   + N L+       R  D     + M+   +
Sbjct: 615 IDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGV 674

Query: 463 LIYEVTMHKLKKAFYNESR 481
               VT + L       +R
Sbjct: 675 DPDNVTYNTLISGLSQTNR 693



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 151/359 (42%), Gaps = 8/359 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F   A RG   +   +N+++D L K+G+ ++ +  +  M   G +  + ++  I D    
Sbjct: 561 FEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFK 620

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
           A K  EA    D M   G+  D V  N+L++  C++E          N +K  VDPD  +
Sbjct: 621 ASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVT 680

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           +  L+ G  +   + +A +   EM+ R          Y T +  L +   + +AL  +  
Sbjct: 681 YNTLISGLSQTNRLGDAYELMHEML-RNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDH 739

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
           M G         ++  +D L K      A  L   M     + + + + Y  VI  LC  
Sbjct: 740 MTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEM-----DTLRDEVSYTTVIIGLCKA 794

Query: 340 DDVDNVFRFFDQMV-FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
           + +D   +   +MV   G    S T+N++ +   K KR+ E       M++    P+ + 
Sbjct: 795 EQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVIT 854

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
               IT L   D+ + A E+++ +   GI+    S   L+ GL   GR  +  +  EEM
Sbjct: 855 YNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEM 913



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 115/282 (40%), Gaps = 47/282 (16%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDG--VLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           +N ++  L +  R    +  +  M  +G  V +  T+ +I D  C  G   +A++  D M
Sbjct: 681 YNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHM 740

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
           + HGVE + V  N  +  +C                                   KEG +
Sbjct: 741 TGHGVEANTVTYNIFIDRLC-----------------------------------KEGRL 765

Query: 234 EEANKTFGEM-VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG-ENCFPTLKF 291
           +EA+    EM   R E      ++Y T +I L + +Q+D A K  R M   +    T   
Sbjct: 766 DEASSLLSEMDTLRDE------VSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHT 819

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           F+  +D   K      A+ L  +MV  G +  P++I YN VI  LC  D VD  +  FD+
Sbjct: 820 FNLLIDAFTKTKRLDEALTLLGLMVQRGCS--PSVITYNMVITCLCKLDKVDKAWELFDE 877

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
           M   G    S++Y ++   L    R  E  +   EM  ++ +
Sbjct: 878 MAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASSDCE 919



 Score = 42.4 bits (98), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 62/144 (43%), Gaps = 8/144 (5%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           A +G  ++ + +NL++D   K  R ++    + +M + G   S+ T+  +    C   K 
Sbjct: 809 AVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVITCLCKLDKV 868

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
           D+A   FD M++ G+    V+   L+  +C Q     R  E L  ++++   D +   I 
Sbjct: 869 DKAWELFDEMAVRGIVASSVSYTVLIYGLCGQ----GRGKEALQVLEEMASSDCE---ID 921

Query: 224 LEGWEKEGNVEEANKTFGEMVERF 247
              WE      +   TFG     F
Sbjct: 922 DLKWEDVAPHSQFQTTFGPCYSSF 945


>gi|75194072|sp|Q9S7R4.1|PP125_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g74900, mitochondrial; AltName: Full=Protein
           ORGANELLE TRANSCRIPT PROCESSING DEFECT 43; Flags:
           Precursor
 gi|5882733|gb|AAD55286.1|AC008263_17 Contains a PF|01535 DUF17 domain [Arabidopsis thaliana]
 gi|12323885|gb|AAG51911.1|AC013258_5 hypothetical protein; 69434-67986 [Arabidopsis thaliana]
          Length = 482

 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 102/401 (25%), Positives = 183/401 (45%), Gaps = 17/401 (4%)

Query: 72  LACTGIIP-TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPY---AWNLMVDVLGKNG 127
           L  T   P TP+LV+ VL+  ++    A+ FF +     R   +   +++L +D+  +  
Sbjct: 46  LLSTKTTPWTPNLVNSVLKRLWNHGPKALQFFHFLDNHHREYVHDASSFDLAIDIAARLH 105

Query: 128 RFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN 186
               +W+ +  M+   +   P TFA + + Y  AGK D+AV  F  M  HG  QD+ + N
Sbjct: 106 LHPTVWSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFN 165

Query: 187 SLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
           ++L  +C+ + +  +A E    ++     D  ++ ++L GW       +A +   EMVER
Sbjct: 166 TILDVLCKSK-RVEKAYELFRALRGRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVER 224

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
              NP ++  Y T L    R  Q+  A +F   MK  +C   +  ++  +       +  
Sbjct: 225 -GINP-NLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIK 282

Query: 307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM 366
            A  ++D M+  G  ++P++  YNA+I +LC  D+V+N    F++MV  G  P+  TYN+
Sbjct: 283 RARNVFDEMIREG--VLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNV 340

Query: 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 426
           +   L         E+    M     +P        I    +  E E A+ ++  +    
Sbjct: 341 LIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGD 400

Query: 427 ILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEV 467
            LP   + N L+ G+        VR+ +E+M+    L+ E+
Sbjct: 401 CLPNLDTYNILISGM-------FVRKRSEDMVVAGKLLLEM 434



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 64/154 (41%), Gaps = 7/154 (4%)

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
           D   + F  M  HG F D  ++N I + L K+KRV +  + F  + +  +    +     
Sbjct: 143 DKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRAL-RGRFSVDTVTYNVI 201

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR-- 460
           +           A+E+   ++E GI P   + N +L G    G++     F  EM  R  
Sbjct: 202 LNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDC 261

Query: 461 --RILIYEVTMHKLKKAFYNESRSMRDIFDSLER 492
              ++ Y   +H    A   E +  R++FD + R
Sbjct: 262 EIDVVTYTTVVHGFGVA--GEIKRARNVFDEMIR 293


>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
 gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
          Length = 603

 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 157/345 (45%), Gaps = 5/345 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDE 165
           RG   SP  +N+++D   K G  E+  + ++ M EDG V  + T+ ++ D  C +G+ +E
Sbjct: 74  RGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGRVEE 133

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A++ F+ M   G   +  + N+++  +C+Q         F     + + PD  S+ IL++
Sbjct: 134 ALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSWSYGILID 193

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G  K G + EA K F  M++     P  V  Y   +  +     +DEAL+  + M+ + C
Sbjct: 194 GLAKAGKLNEAYKLFRRMLDS-GITPSAV-TYNVVIHGMCLAYTLDEALELFKSMRSKGC 251

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P+   F+  +D   K      A +L   M   G   +P+++ Y+ +I  LC+   VD+ 
Sbjct: 252 RPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGH--VPDVVTYSTLISGLCSIARVDDA 309

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
               + MV     P  +T N +   L K  R+ E  +    M+ +   P  +   T +  
Sbjct: 310 RHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHG 369

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 450
              A + E A E+ + ++  G+ P   +   L+ GL    RL + 
Sbjct: 370 HCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEA 414



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 87/382 (22%), Positives = 165/382 (43%), Gaps = 19/382 (4%)

Query: 109 QRLSPYAWN--LMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           + +SP +W+  +++D L K G+     +  + +   GV  S   + S+    C A  +D+
Sbjct: 4   RNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDD 63

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD----PDGDSFA 221
           A   F  M+  G     V  N ++ A C++        E  + +KK+++    PD  ++ 
Sbjct: 64  ARELFADMNRRGCPPSPVTYNVIIDASCKR----GMLEEACDLIKKMIEDGHVPDVVTYN 119

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            +++G  K G VEEA   F EM ER    P    ++ T ++ L +  ++D+A +    M+
Sbjct: 120 TVMDGLCKSGRVEEALLLFNEM-ERLGCTPNR-RSHNTIILGLCQQSKIDQACQVFHEME 177

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
             +  P    +   +D L K      A +L+  M+  G  + P+ + YN VI  +C    
Sbjct: 178 ARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSG--ITPSAVTYNVVIHGMCLAYT 235

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
           +D     F  M   G  P   T+N++ +   K  ++ E  +    M  +   P  +  +T
Sbjct: 236 LDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYST 295

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461
            I+ L      + A  +   +++    P   + N L+ GL   GR+ + R   + M++  
Sbjct: 296 LISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSG 355

Query: 462 ----ILIYEVTMHKLKKAFYNE 479
               ++ Y   +H   +A   E
Sbjct: 356 QSPDVVTYNTLVHGHCRAGQTE 377



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 92/395 (23%), Positives = 165/395 (41%), Gaps = 53/395 (13%)

Query: 75  TGIIP---TPDLVHEVLQLSYDSPSSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFE 130
           +GI P   T ++V   + L+Y +   A++ F+    +G R S + +N+++D   K G+ +
Sbjct: 214 SGITPSAVTYNVVIHGMCLAY-TLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMD 272

Query: 131 QMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLL 189
           + +  ++ M +DG V  + T++++    C   + D+A    + M     +  VV  N+L+
Sbjct: 273 EAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLI 332

Query: 190 SAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFE 248
             +C+   +   A E L+  V     PD  ++  L+ G  + G  E A +   +MV R  
Sbjct: 333 HGLCKA-GRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVAR-- 389

Query: 249 WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHA 308
               +V+ Y   +  L +  ++ EA      MK   C                       
Sbjct: 390 GLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGC----------------------- 426

Query: 309 VQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIF 368
                          PNL  Y A+I   C+   VD   + F +MV  G  PD + Y  + 
Sbjct: 427 --------------APNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLA 472

Query: 369 ECLIK---NKRVHEVEKFFHEMIKNE-WQPTPLNCATAITMLLDADEPEIAIEIWNYILE 424
             L K   + R  E+ +   E +++E W         A+  LLDA + E+A+     ++ 
Sbjct: 473 AELCKSGRSARALEILREGRESLRSEAWGDEVYR--FAVDGLLDAGKMEMALGFVRDMVR 530

Query: 425 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
            G LP       L+ GL   G+  + R   EE+++
Sbjct: 531 GGQLPAPERCASLVAGLCKSGQGGEARAVLEEIMD 565



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/344 (20%), Positives = 147/344 (42%), Gaps = 6/344 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           ++  + D    AGK ++A   F  +   GV    VA  SL+  +C   +       F + 
Sbjct: 12  SYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADM 71

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
            ++   P   ++ ++++   K G +EEA     +M+E  + +   V+ Y T +  L +  
Sbjct: 72  NRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIE--DGHVPDVVTYNTVMDGLCKSG 129

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           +V+EAL     M+   C P  +  +  +  L + +    A Q++  M     ++ P+   
Sbjct: 130 RVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEME--ARDIPPDSWS 187

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           Y  +I  L     ++  ++ F +M+  G  P ++TYN++   +     + E  + F  M 
Sbjct: 188 YGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMR 247

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
               +P+       I       + + A  +   + ++G +P   + + L+ GL ++ R+ 
Sbjct: 248 SKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVD 307

Query: 449 DVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSL 490
           D R   E+M+ R+     VT + L        R    R++ D++
Sbjct: 308 DARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAM 351


>gi|302767472|ref|XP_002967156.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
 gi|300165147|gb|EFJ31755.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
          Length = 651

 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 158/337 (46%), Gaps = 8/337 (2%)

Query: 127 GRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN 186
           GR  +     R M +D    + T+ ++  + C AGK+DEA      M   G   D V  +
Sbjct: 58  GRVVEALEHFRAMAKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFS 117

Query: 187 SLLSAICR--QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244
           +L+  +C+   E Q  R LE + + + + + D     I+     K  +VE A+K  G ++
Sbjct: 118 TLIDGLCKFGSEEQAFRVLEDVIQ-RGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVI 176

Query: 245 ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 304
            +  + P  VL +   +    + K +D A K L VM  + C P +  F+  +  L K N 
Sbjct: 177 AK-GFTPT-VLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANR 234

Query: 305 STHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTY 364
              A QL + MV  G +  PN++ Y+ VI  LC    VD+ +  F  M      P+ +T+
Sbjct: 235 VGEAQQLLEKMVTGGCS--PNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTH 292

Query: 365 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 424
           N++ + L K KR+ E  + +H M +    P  +   + I  L  + + + A +++  I E
Sbjct: 293 NILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPE 352

Query: 425 NGILPLEA-SANELLVGLRNLGRLSDVRRFAEEMLNR 460
           +G+    A + + L  G   LGR++D  R    ++++
Sbjct: 353 SGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDK 389



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 139/333 (41%), Gaps = 10/333 (3%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+  +   +  AG  D A+   + M  +G E + V   +L+  +C    +   ALE    
Sbjct: 11  TYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLC-DAGRVVEALEHFRA 69

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           + K   PD  ++  L+    K G  +EA     EM+ R    P+ V  + T +  L +  
Sbjct: 70  MAKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMIAR-GCAPDTV-TFSTLIDGLCKFG 127

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILV-KLNDSTHAVQLWDIMVGIGFNLMPNLI 327
             ++A + L  +       +   F   +  L  K N    A ++  +++  GF   P ++
Sbjct: 128 SEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFT--PTVL 185

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
           M+N VI   C   D+D+ ++  + M+  G  P+  T+ ++   L K  RV E ++   +M
Sbjct: 186 MFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKM 245

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
           +     P  +  +T I  L    + + A E++  +      P   + N L+ GL    R+
Sbjct: 246 VTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRI 305

Query: 448 SDVR----RFAEEMLNRRILIYEVTMHKLKKAF 476
            + R    R  E      I+ Y   +  L K+F
Sbjct: 306 EEARQLYHRMRETGCAPDIITYNSLIDGLCKSF 338



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 92/437 (21%), Positives = 165/437 (37%), Gaps = 77/437 (17%)

Query: 98  AVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDS 156
           A++ FR   +        +  +V  L K G+F++    +R M   G      TF+++ D 
Sbjct: 63  ALEHFRAMAKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDG 122

Query: 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV------- 209
            C  G  ++A    + +   G+     A  +++  +C + N    A + L  V       
Sbjct: 123 LCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTP 182

Query: 210 -----------------------------KKIVDPDGDSFAILLEGWEKEGNVEEANKTF 240
                                        +K   P+  +F IL+ G  K   V EA +  
Sbjct: 183 TVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLL 242

Query: 241 GEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV 300
            +MV     +P +V+ Y T +  L +  QVD+A +  ++M+  NC P +   +  +D L 
Sbjct: 243 EKMVTG-GCSP-NVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLC 300

Query: 301 KLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM-------- 352
           K      A QL+  M   G    P++I YN++I  LC +  VD  F+ F  +        
Sbjct: 301 KAKRIEEARQLYHRMRETG--CAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAA 358

Query: 353 -------VFHG--------------------AF-PDSLTYNMIFECLIKNKRVHEVEKFF 384
                  +FHG                     F PD  TY  +     K  R  EV +  
Sbjct: 359 NAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELV 418

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
            EM    + P     +  +  L + +  E AI++++ +   G        N ++ G+   
Sbjct: 419 EEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARA 478

Query: 445 GRLSDVRRFAEEMLNRR 461
            + +      E+++++R
Sbjct: 479 SKHNKALAVLEQVIDKR 495



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 73/381 (19%), Positives = 153/381 (40%), Gaps = 42/381 (11%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           ++ +++ L K G+ +  +   ++M + +   ++ T   + D  C A + +EA   +  M 
Sbjct: 257 YSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMR 316

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK--IVDPDGDSFAILLEGWEKEGN 232
             G   D++  NSL+  +C+   Q   A +    + +  +   +  +++ L  G+   G 
Sbjct: 317 ETGCAPDIITYNSLIDGLCKS-FQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGR 375

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           + +A + F  +V++  ++P+ +  Y + ++   +  +  E ++ +  M  +   P +   
Sbjct: 376 MADACRIFSMLVDK-GFSPD-LATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTL 433

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIG-------FNLM---------------------- 323
           S  L  L + N +  A+QL+D M   G       +NL+                      
Sbjct: 434 SAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHNKALAVLEQVID 493

Query: 324 -------PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
                  P+    +A++  LC     D+  +   +M   G      +YN +   L + +R
Sbjct: 494 KRDRKFNPSSSAVDALVESLCQVGRTDDAKQLLHKMSERGFAAAVSSYNGLLSGLSRLQR 553

Query: 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 436
             E  + F  M+     P        I+ L  A + + A E+   + + G  P   + N 
Sbjct: 554 WDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNT 613

Query: 437 LLVGLRNLGRLSDVRRFAEEM 457
           L+ G    GR    R+  EEM
Sbjct: 614 LIGGYCKSGRADLARKLLEEM 634



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 62/318 (19%), Positives = 126/318 (39%), Gaps = 42/318 (13%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV--LSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           +N ++D L K+ + ++ +   + + E GV   +  T++++F  Y   G+  +A   F ++
Sbjct: 327 YNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSML 386

Query: 174 SMHGVEQDVVAVNSLLSAICR----------------------------------QENQT 199
              G   D+    SL+   C+                                  + N T
Sbjct: 387 VDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHT 446

Query: 200 SRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFE--WNPEHVLA 256
            RA++  + +  +    D   + +++EG  +     +A     +++++ +  +NP    A
Sbjct: 447 ERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHNKALAVLEQVIDKRDRKFNPSSS-A 505

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
            +  + +L +  + D+A + L  M        +  ++  L  L +L     A Q+++ MV
Sbjct: 506 VDALVESLCQVGRTDDAKQLLHKMSERGFAAAVSSYNGLLSGLSRLQRWDEATQVFEAMV 565

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
             G    P +   N VI  LC+   VD+ +    +M   G  PD  T N +     K+ R
Sbjct: 566 SAG--PAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGR 623

Query: 377 VHEVEKFFHEMIKNEWQP 394
                K   EM +   +P
Sbjct: 624 ADLARKLLEEMTEAGLEP 641


>gi|225425882|ref|XP_002266563.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial [Vitis vinifera]
          Length = 496

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 155/318 (48%), Gaps = 12/318 (3%)

Query: 55  IICEILAHASSDDIESAL----ACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--G 108
           I+  I   +S D++  +L    AC  I  + +LV  +L    D   SA+  FRWA    G
Sbjct: 48  IVSRIREGSSDDEVFKSLVHDEACNAIPMSQNLVDVLLHRFKDDWKSALGLFRWAESRLG 107

Query: 109 QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVM 168
              +P A+++MVD+LGK  + ++M   +  M++  ++ L T A       GAG++++AV 
Sbjct: 108 YEHAPEAYDMMVDILGKLKQVDKMRALMEEMRQGNLVRLSTVAKAMRRLAGAGEWEDAVR 167

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
            FD +    +E++  ++N LL  +C+ E +  +A      +K  + P+  +F I + GW 
Sbjct: 168 VFDDLGNFELEKNTESMNLLLDTLCK-ERKVEQARAIFLELKPHISPNTHTFNIFIHGWC 226

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           K   V+EA  T  EM  +       V++Y T + +  R     +  + L  M+ + C P 
Sbjct: 227 KANRVDEAEWTIQEM--KGHGCRPCVISYSTIIQSYCRQSNFRKVYELLDDMQAQGCAPN 284

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
           +  ++  +  L K+     A+Q+ + M  +G    P+ + YNA+I  L     +    R 
Sbjct: 285 VVTYTTIMCSLTKVEQFEEALQIAERMRSVGCK--PDTLFYNALIHTLGRAGQLREAVRV 342

Query: 349 FD-QMVFHGAFPDSLTYN 365
           F+ +M   G  P++ TYN
Sbjct: 343 FEVEMPKTGVPPNTSTYN 360



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 56/138 (40%), Gaps = 1/138 (0%)

Query: 321 NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEV 380
           ++ PN   +N  I   C  + VD       +M  HG  P  ++Y+ I +   +     +V
Sbjct: 210 HISPNTHTFNIFIHGWCKANRVDEAEWTIQEMKGHGCRPCVISYSTIIQSYCRQSNFRKV 269

Query: 381 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 440
            +   +M      P  +   T +  L   ++ E A++I   +   G  P     N L+  
Sbjct: 270 YELLDDMQAQGCAPNVVTYTTIMCSLTKVEQFEEALQIAERMRSVGCKPDTLFYNALIHT 329

Query: 441 LRNLGRLSD-VRRFAEEM 457
           L   G+L + VR F  EM
Sbjct: 330 LGRAGQLREAVRVFEVEM 347


>gi|302754868|ref|XP_002960858.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
 gi|300171797|gb|EFJ38397.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
          Length = 699

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 158/337 (46%), Gaps = 8/337 (2%)

Query: 127 GRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN 186
           GR  +     R M +D    + T+ ++  + C AGK+DEA      M   G   D V  +
Sbjct: 106 GRVVEALEHFRAMAKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMVAQGCAPDTVTFS 165

Query: 187 SLLSAICR--QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244
           +L+  +C+   E Q  R LE + + + + + D     I+     K  +VE A+K  G ++
Sbjct: 166 TLIDGLCKFGSEEQAFRVLEDVIQ-RGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVI 224

Query: 245 ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 304
            +  + P  VL +   +    + K +D A K L VM  + C P +  F+  +  L K N 
Sbjct: 225 AK-GFTPT-VLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANR 282

Query: 305 STHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTY 364
              A QL + MV  G +  PN++ Y+ VI  LC    VD+ +  F  M      P+ +T+
Sbjct: 283 VGEAQQLLEKMVMGGCS--PNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTH 340

Query: 365 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 424
           N++ + L K KR+ E  + +H M +    P  +   + I  L  + + + A +++  I E
Sbjct: 341 NILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPE 400

Query: 425 NGILPLEA-SANELLVGLRNLGRLSDVRRFAEEMLNR 460
           +G+    A + + L  G   LGR++D  R    ++++
Sbjct: 401 SGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDK 437



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/390 (22%), Positives = 161/390 (41%), Gaps = 11/390 (2%)

Query: 93  DSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVR-VMKEDGVLSLPTFA 151
           D P   + FF WA      + ++ N  +D+L +  R ++     R  M    + +  T+ 
Sbjct: 2   DKPELVLLFFDWARSRVGHNVFSCNCALDMLCRLNRRQEALALFRNAMARICMPNKFTYG 61

Query: 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK 211
            +   +  AG  D A+   + M   G E + V   +L+  +C    +   ALE    + K
Sbjct: 62  ILIRGFSSAGDLDIAIQLLEEMKSSGFEGNAVVHTTLMKGLC-DAGRVVEALEHFRAMAK 120

Query: 212 IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD 271
              PD  ++  L+    K G  +EA     EMV +    P+ V  + T +  L +    +
Sbjct: 121 DCAPDVMTYTALVHALCKAGKFDEAQGMLREMVAQ-GCAPDTV-TFSTLIDGLCKFGSEE 178

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILV-KLNDSTHAVQLWDIMVGIGFNLMPNLIMYN 330
           +A + L  +       +   F   +  L  K N    A ++  +++  GF   P ++M+N
Sbjct: 179 QAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFT--PTVLMFN 236

Query: 331 AVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 390
            VI   C   D+D+ ++  + M+  G  P+  T+ ++   L K  RV E ++   +M+  
Sbjct: 237 LVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMG 296

Query: 391 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 450
              P  +  +T I  L    + + A E++  +      P   + N L+ GL    R+ + 
Sbjct: 297 GCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEA 356

Query: 451 R----RFAEEMLNRRILIYEVTMHKLKKAF 476
           R    R  E      I+ Y   +  L K+F
Sbjct: 357 RQLYHRMRETGCAPDIITYNSLIDGLCKSF 386



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 91/437 (20%), Positives = 162/437 (37%), Gaps = 77/437 (17%)

Query: 98  AVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDS 156
           A++ FR   +        +  +V  L K G+F++    +R M   G      TF+++ D 
Sbjct: 111 ALEHFRAMAKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDG 170

Query: 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV------- 209
            C  G  ++A    + +   G+     A  +++  +C + N    A + L  V       
Sbjct: 171 LCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTP 230

Query: 210 -----------------------------KKIVDPDGDSFAILLEGWEKEGNVEEANKTF 240
                                        +K   P+  +F IL+ G  K   V EA +  
Sbjct: 231 TVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLL 290

Query: 241 GEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV 300
            +MV        +V+ Y T +  L +  QVD+A +  ++M+  NC P +   +  +D L 
Sbjct: 291 EKMV--MGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLC 348

Query: 301 KLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM-------- 352
           K      A QL+  M   G    P++I YN++I  LC +  VD  F+ F  +        
Sbjct: 349 KAKRIEEARQLYHRMRETG--CAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAA 406

Query: 353 -------VFHG--------------------AF-PDSLTYNMIFECLIKNKRVHEVEKFF 384
                  +FHG                     F PD  TY  +     K  R  EV +  
Sbjct: 407 NAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELV 466

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
            EM    + P     +  +  L + +  E AI++++ +   G        N ++ G+   
Sbjct: 467 EEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARA 526

Query: 445 GRLSDVRRFAEEMLNRR 461
            +        E+++++R
Sbjct: 527 SKHDKALAVLEQVIDKR 543



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 73/381 (19%), Positives = 153/381 (40%), Gaps = 42/381 (11%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           ++ +++ L K G+ +  +   ++M + +   ++ T   + D  C A + +EA   +  M 
Sbjct: 305 YSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMR 364

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK--IVDPDGDSFAILLEGWEKEGN 232
             G   D++  NSL+  +C+   Q   A +    + +  +   +  +++ L  G+   G 
Sbjct: 365 ETGCAPDIITYNSLIDGLCKS-FQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGR 423

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           + +A + F  +V++  ++P+ +  Y + ++   +  +  E ++ +  M  +   P +   
Sbjct: 424 MADACRIFSMLVDK-GFSPD-LATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTL 481

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIG-------FNLM---------------------- 323
           S  L  L + N +  A+QL+D M   G       +NL+                      
Sbjct: 482 SAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHDKALAVLEQVID 541

Query: 324 -------PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
                  P+    +A++  LC     D+  +   +M   G      +YN +   L + +R
Sbjct: 542 KRDRKFNPSSSAVDALVESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQR 601

Query: 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 436
             E  + F  M+     P        I+ L  A + + A E+   + + G  P   + N 
Sbjct: 602 WDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNT 661

Query: 437 LLVGLRNLGRLSDVRRFAEEM 457
           L+ G    GR    R+  EEM
Sbjct: 662 LIGGYCKSGRADLARKLLEEM 682



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 62/318 (19%), Positives = 127/318 (39%), Gaps = 42/318 (13%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV--LSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           +N ++D L K+ + ++ +   + + E GV   +  T++++F  Y   G+  +A   F ++
Sbjct: 375 YNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSML 434

Query: 174 SMHGVEQDVVAVNSLLSAICR----------------------------------QENQT 199
              G   D+    SL+   C+                                  + N T
Sbjct: 435 VDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHT 494

Query: 200 SRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFE--WNPEHVLA 256
            RA++  + +  +    D   + +++EG  +    ++A     +++++ +  +NP    A
Sbjct: 495 ERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHDKALAVLEQVIDKRDRKFNPSSS-A 553

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
            +  + +L +  + D+A + L  M        +  ++  L  L +L     A Q+++ MV
Sbjct: 554 VDALVESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQRWDEATQVFEAMV 613

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
             G    P +   N VI  LC+   VD+ +    +M   G  PD  T N +     K+ R
Sbjct: 614 SAG--PAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGR 671

Query: 377 VHEVEKFFHEMIKNEWQP 394
                K   EM +   +P
Sbjct: 672 ADLARKLLEEMTEAGLEP 689


>gi|51971677|dbj|BAD44503.1| hypothetical protein [Arabidopsis thaliana]
          Length = 447

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 101/397 (25%), Positives = 180/397 (45%), Gaps = 15/397 (3%)

Query: 72  LACTGIIP-TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPY---AWNLMVDVLGKNG 127
           L  T   P TP+LV+ VL+  ++    A+ FF +     R   +   +++L +D+  +  
Sbjct: 40  LLSTKTTPWTPNLVNSVLKRLWNHGPKALQFFHFLDNHHREYVHDASSFDLAIDIAARLH 99

Query: 128 RFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN 186
               +W+ +  M+   +   P TFA + + Y  AGK D+AV  F  M  HG  QD+ + N
Sbjct: 100 LHPTVWSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFN 159

Query: 187 SLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
           ++L  +C+ + +  +A E    ++     D  ++ ++L GW       +  +   EMVER
Sbjct: 160 TILDVLCKSK-RVEKAYELFRALRGRFSVDTVTYNVILNGWCLIKRTPKTLEVLKEMVER 218

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
              NP ++  Y T L    R  Q+  A +F   MK  +C   +  ++  +       +  
Sbjct: 219 -GINP-NLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIK 276

Query: 307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM 366
            A  ++D M+  G  ++P++  YNA+I +LC  D+V+N    F++MV  G  P+  TYN+
Sbjct: 277 RARNVFDEMIREG--VLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNV 334

Query: 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 426
           +   L         E+    M     +P        I    +  E E A+ ++  +    
Sbjct: 335 LIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGD 394

Query: 427 ILPLEASANELLVGLRNLGRLSDV-----RRFAEEML 458
            LP   + N L+ G+    R  D+     + FA+E+L
Sbjct: 395 CLPNLDTYNILISGMFVRKRSEDMVVAGNQAFAKEIL 431



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 58/257 (22%), Positives = 112/257 (43%), Gaps = 10/257 (3%)

Query: 205 FLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT 263
            ++R++ + + P   +FAI+ E +   G  ++A K F  M E   +  + + ++ T L  
Sbjct: 107 LIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCF--QDLASFNTILDV 164

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLM 323
           L + K+V++A +  R ++G     T+ + +  L+    +  +   +++   MV  G N  
Sbjct: 165 LCKSKRVEKAYELFRALRGRFSVDTVTY-NVILNGWCLIKRTPKTLEVLKEMVERGIN-- 221

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           PNL  YN ++        + + + FF +M       D +TY  +         +      
Sbjct: 222 PNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNV 281

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
           F EMI+    P+       I +L   D  E A+ ++  ++  G  P   + N L+ GL +
Sbjct: 282 FDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFH 341

Query: 444 LGRLSDVRRFAEEMLNR 460
            G  S      EE++ R
Sbjct: 342 AGEFSR----GEELMQR 354


>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
 gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
          Length = 599

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 156/345 (45%), Gaps = 5/345 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDE 165
           RG   SP  +N+M+D   K G  E+  + ++ M EDG V  + T+ ++ D  C + + +E
Sbjct: 74  RGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEE 133

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A++ F+ M   G   +  + N+++  +C+Q         F     K + PD  S+ IL++
Sbjct: 134 ALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWSYGILID 193

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G  K G + EA K F  M++     P  V  Y   +  +     +DEAL+  + M+ + C
Sbjct: 194 GLAKAGKLNEAYKLFQRMLDS-GITPSAV-TYNVVIHGMCLAYTLDEALELFKSMRSKGC 251

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P+   F+  +D   K      A +L   M   G   +P+++ Y+ +I  LC+   VD+ 
Sbjct: 252 RPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGH--VPDVVTYSTLISGLCSIARVDDA 309

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
               + MV     P  +T N +   L K  R+ E  +    M+ +   P  +   T +  
Sbjct: 310 RHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHG 369

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 450
              A + E A E+ + ++  G+ P   +   L+ GL    RL + 
Sbjct: 370 HCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEA 414



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 87/382 (22%), Positives = 165/382 (43%), Gaps = 19/382 (4%)

Query: 109 QRLSPYAWN--LMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           + +SP +W+  +++D L K G+     N  + +   GV  S   + S+    C A  +D+
Sbjct: 4   RNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDD 63

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD----PDGDSFA 221
           A   F  M+  G     V  N ++ A C++        E  + +KK+++    PD  ++ 
Sbjct: 64  ARELFADMNRRGCPPSPVTYNVMIDASCKR----GMLEEACDLIKKMIEDGHVPDVVTYN 119

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            +++G  K   VEEA   F EM ER    P    ++ T ++ L +  ++D+A +    M+
Sbjct: 120 TVMDGLCKSSRVEEALLLFNEM-ERLGCTPNR-RSHNTIILGLCQQSKIDQACQVFHEME 177

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
            ++  P    +   +D L K      A +L+  M+  G  + P+ + YN VI  +C    
Sbjct: 178 AKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSG--ITPSAVTYNVVIHGMCLAYT 235

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
           +D     F  M   G  P   T+N++ +   K  ++ E  +    M  +   P  +  +T
Sbjct: 236 LDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYST 295

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461
            I+ L      + A  +   +++    P   + N L+ GL   GR+ + R   + M++  
Sbjct: 296 LISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSG 355

Query: 462 ----ILIYEVTMHKLKKAFYNE 479
               ++ Y   +H   +A   E
Sbjct: 356 QSPDVVTYNTLVHGHCRAGQTE 377



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/395 (23%), Positives = 165/395 (41%), Gaps = 53/395 (13%)

Query: 75  TGIIP---TPDLVHEVLQLSYDSPSSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFE 130
           +GI P   T ++V   + L+Y +   A++ F+    +G R S + +N+++D   K G+ +
Sbjct: 214 SGITPSAVTYNVVIHGMCLAY-TLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLD 272

Query: 131 QMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLL 189
           + +  ++ M +DG V  + T++++    C   + D+A    + M     +  VV  N+L+
Sbjct: 273 EAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLI 332

Query: 190 SAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFE 248
             +C+   +   A E L+  V     PD  ++  L+ G  + G  E A +   +MV R  
Sbjct: 333 HGLCKA-GRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVAR-- 389

Query: 249 WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHA 308
               +V+ Y   +  L +  ++ EA      MK   C                       
Sbjct: 390 GLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGC----------------------- 426

Query: 309 VQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIF 368
                          PNL  Y A+I   C+   VD   + F +MV  G  PD + Y  + 
Sbjct: 427 --------------APNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLA 472

Query: 369 ECLIK---NKRVHEVEKFFHEMIKNE-WQPTPLNCATAITMLLDADEPEIAIEIWNYILE 424
             L K   + R  E+ +   E +++E W         A+  LL+A + E+A+     ++ 
Sbjct: 473 AELCKSGRSARALEILREGRESLRSEAWGDEVYR--FAVDGLLEAGKMEMALGFVRDMVR 530

Query: 425 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
            G LP       L+ GL   G+  + R   EE+++
Sbjct: 531 GGQLPAPERCASLVAGLCKSGQGGEARAVLEEIMD 565



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/344 (20%), Positives = 147/344 (42%), Gaps = 6/344 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           ++  + D    AGK ++A   F  +   GV    VA  SL+  +C   +       F + 
Sbjct: 12  SYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADM 71

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
            ++   P   ++ ++++   K G +EEA     +M+E  + +   V+ Y T +  L +  
Sbjct: 72  NRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIE--DGHVPDVVTYNTVMDGLCKSS 129

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           +V+EAL     M+   C P  +  +  +  L + +    A Q++  M     ++ P+   
Sbjct: 130 RVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEME--AKDIPPDSWS 187

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           Y  +I  L     ++  ++ F +M+  G  P ++TYN++   +     + E  + F  M 
Sbjct: 188 YGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMR 247

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
               +P+       I       + + A  +   + ++G +P   + + L+ GL ++ R+ 
Sbjct: 248 SKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVD 307

Query: 449 DVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSL 490
           D R   E+M+ R+     VT + L        R    R++ D++
Sbjct: 308 DARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAM 351


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 108/442 (24%), Positives = 179/442 (40%), Gaps = 55/442 (12%)

Query: 80   TPDLVHEVLQLSYDSPSSAVDFFRWAG--RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVR 137
            T  +V +VLQ    +  +A+ FF WA    G     Y  N ++  L    R ++  +A++
Sbjct: 810  TTTVVGKVLQ-GVRNGDAALGFFDWATSQEGYNHDTYTCNCLLQALL---RLKRPKDALQ 865

Query: 138  VMKEDGVLS--LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
            V +     S  + TF  +    C AG    A      M  HGV Q+V+  N ++  +C  
Sbjct: 866  VYRNKLCCSPNMFTFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSA 925

Query: 196  ENQTSRALEFLNR-------------------------------------VKKIVDPDGD 218
                S ALE                                         V K   P+  
Sbjct: 926  RKLDS-ALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVV 984

Query: 219  SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
            +++ LL G  K G ++EA      M  R   +P +++ Y T +    +  ++DEA   L 
Sbjct: 985  TYSSLLHGLCKAGKLDEATALLQRMT-RSGCSP-NIVTYNTIIDGHCKLGRIDEAYHLLE 1042

Query: 279  VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
             M    C P +  ++  LD   K   +  A+ L ++MV  G+  +PNL  YN+++ + C 
Sbjct: 1043 EMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGY--VPNLFTYNSLLDMFCK 1100

Query: 339  NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
             D+V+   +    M+  G  P+ ++YN +   L K  +VHE      +M+ N   P  + 
Sbjct: 1101 KDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVT 1160

Query: 399  CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
              T I  +      +IA E++N I E+G  P   + N L+ GL    R         EM 
Sbjct: 1161 FNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMT 1220

Query: 459  NRR-----ILIYEVTMHKLKKA 475
             ++     I+ Y   +  L K+
Sbjct: 1221 RKQGCSPDIITYNTVIDGLCKS 1242



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 101/411 (24%), Positives = 179/411 (43%), Gaps = 29/411 (7%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVR 137
           +P++V +VLQ   D P +A+ FF WA    G +   +  N +++VL K  ++ Q  +  R
Sbjct: 92  SPEIVGKVLQRLID-PGAALVFFEWAETRDGYQHEIFCCNCLLNVLVKAHQYSQAHDLFR 150

Query: 138 VMKE-----DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI 192
              E     D V    T++++   +  AGK   A   FD M+  G++       S+L  +
Sbjct: 151 SRIEGQWGGDTV----TYSTLISGFIRAGKILPAYELFDEMNRKGLKAHAGVHKSILRGL 206

Query: 193 CRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
           C    Q S A+     + K   PD  ++  ++ G  K   +++A +   EMV+   + P 
Sbjct: 207 C-DAGQCSDAVLHFREMSKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDN-GFAP- 263

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
           +V +Y T L    +  +V+ AL  L  M    C P +  ++  ++ L KL+    A ++ 
Sbjct: 264 NVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVM 323

Query: 313 DIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 372
           D M+  G    PN+I Y  ++   C   D+D       +M   G  P+++TYN I     
Sbjct: 324 DKMIQRGCQ--PNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFC 381

Query: 373 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 432
           +   +    +    MI+    P  +N +T I+    A +   A ++   ++  G  P  A
Sbjct: 382 RRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVA 441

Query: 433 SANELLVGLRNLGRLSDVRRFAEEMLNRRI--------LIYEVTMHKLKKA 475
             + L+  L     +      A+E+L   I        + Y + +H L KA
Sbjct: 442 CLSTLIDALCKAAAIDS----AQELLRMSIGMDCAPDVVAYSILIHALCKA 488



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 103/433 (23%), Positives = 192/433 (44%), Gaps = 10/433 (2%)

Query: 66   DDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGK 125
            +D+ S      ++    L+H + +      ++A+   R    G   +   +N ++D   K
Sbjct: 972  EDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATAL-LQRMTRSGCSPNIVTYNTIIDGHCK 1030

Query: 126  NGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVA 184
             GR ++ ++ +  M + G   ++ T+  + D++C  GK ++A+   +VM   G   ++  
Sbjct: 1031 LGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFT 1090

Query: 185  VNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
             NSLL   C+++ +  RA + L+  ++K   P+  S+  ++ G  K   V E      +M
Sbjct: 1091 YNSLLDMFCKKD-EVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQM 1149

Query: 244  VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303
            +      P+ ++ + T +  + +  +VD A +   +++   C P L  +++ +  L K  
Sbjct: 1150 LSN-NCVPD-IVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSR 1207

Query: 304  DSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLT 363
                A  L   M        P++I YN VI  LC +  VD  ++ F QM+  G  PD +T
Sbjct: 1208 RFDQAEYLLREMTR-KQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVT 1266

Query: 364  YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 423
            Y+++   L K + + E       M+KN + P  +   T I         + A+EI   +L
Sbjct: 1267 YSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLL 1326

Query: 424  ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSM 483
              G  P   + +  +  L   GRL       E ML   ++   VT + L K F + S + 
Sbjct: 1327 SKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLT- 1385

Query: 484  RDIFDSLE--RRC 494
             D  D  E  R+C
Sbjct: 1386 EDAVDLFEVMRQC 1398



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/359 (23%), Positives = 158/359 (44%), Gaps = 10/359 (2%)

Query: 128 RFEQMWNAVRVM----KEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV 183
           + +Q+  A RVM    +     ++ T+ ++ D +C  G  D AV     M+  G   + +
Sbjct: 312 KLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAI 371

Query: 184 AVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
             N+++   CR+ N   RA + L   ++    PD  +++ ++ G+ K G + EA+    +
Sbjct: 372 TYNNIMHVFCRR-NDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQ 430

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
           M+ R    P+ V    T +  L +   +D A + LR+  G +C P +  +S  +  L K 
Sbjct: 431 MIRR-GCRPD-VACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKA 488

Query: 303 NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSL 362
                A    D+MV       P+++ YN+V+  LC +  +++ F  FD+M   G  PD +
Sbjct: 489 KRLPEAESWLDVMVK--NRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVV 546

Query: 363 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 422
           TY+++     K+  +    K    M + +  P  +  +  I  L  A   + A +++  +
Sbjct: 547 TYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEM 606

Query: 423 LENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
           L  G  P   + N L+ GL  + ++       E M  +      +T   L     N SR
Sbjct: 607 LGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNASR 665



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/364 (23%), Positives = 159/364 (43%), Gaps = 8/364 (2%)

Query: 97  SAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
            AV+  R    RG R +   +N ++ V  +    E+    +++M + G       +++I 
Sbjct: 353 GAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTII 412

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIV 213
             +C AGK  EA    + M   G   DV  +++L+ A+C+     S A E L   +    
Sbjct: 413 SGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDS-AQELLRMSIGMDC 471

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
            PD  +++IL+    K   + EA      MV+   + P+ V+ Y + +  L + +++++A
Sbjct: 472 APDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCY-PD-VVTYNSVVDGLCKSRRINDA 529

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
                 M+     P +  +S  +    K N+   A ++ + M       +P+++ Y+A+I
Sbjct: 530 FLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEA--KCVPDVVTYSALI 587

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
             LC    VD  F  F +M+  G  P+ +TYN + + L K  +V +  +    M K    
Sbjct: 588 NGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCT 647

Query: 394 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 453
           P  +     I  L +A   E A  +   + + G LP   +   LL  L+    L  V + 
Sbjct: 648 PDSITYTCLINGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRALQKTNNLELVEQL 707

Query: 454 AEEM 457
            +EM
Sbjct: 708 LKEM 711



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 125/286 (43%), Gaps = 5/286 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRV-MKEDGVLSLPTFASIFDSYCGAGKYDE 165
           RG R      + ++D L K    +     +R+ +  D    +  ++ +  + C A +  E
Sbjct: 434 RGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPE 493

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A    DVM  +    DVV  NS++  +C+        L F       V PD  +++I++ 
Sbjct: 494 AESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIH 553

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
            + K+ N++ A K    M E  +  P+ V+ Y   +  L +   VD+A    + M G  C
Sbjct: 554 SFCKDNNLDSAFKMLERMKEA-KCVPD-VVTYSALINGLCKAGTVDKAFDVFQEMLGCGC 611

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P L  ++  +D L K+N    A ++ +IM     +  P+ I Y  +I  LCN   ++  
Sbjct: 612 APNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQ--SCTPDSITYTCLINGLCNASRLEEA 669

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
           +R   +M   G  PD +TY  +   L K   +  VE+   EM   E
Sbjct: 670 WRVLREMKDKGCLPDRMTYGTLLRALQKTNNLELVEQLLKEMEATE 715



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 129/263 (49%), Gaps = 8/263 (3%)

Query: 116  WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
            +N ++D + K  R +  +    +++E G   +L T+ S+    C + ++D+A      M+
Sbjct: 1161 FNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMT 1220

Query: 175  -MHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAILLEGWEKEGN 232
               G   D++  N+++  +C+ + +  RA + FL  +   + PD  +++I++    K   
Sbjct: 1221 RKQGCSPDIITYNTVIDGLCKSK-RVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRF 1279

Query: 233  VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
            ++EAN    E++ +  ++P   + Y T +    +   +D+AL+ L+++  +  +P +  F
Sbjct: 1280 MDEANNVL-ELMLKNGFDP-GAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTF 1337

Query: 293  SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
            S  +D L K      A +L + M+  G  L+P+ + YN ++   C+    ++    F+ M
Sbjct: 1338 SIFIDWLSKRGRLRQAGELLETMLRAG--LVPDTVTYNTLLKGFCDASLTEDAVDLFEVM 1395

Query: 353  VFHGAFPDSLTYNMIFECLIKNK 375
               G  PD+ TY  +   L+  K
Sbjct: 1396 RQCGCEPDNATYTTLVGHLVDKK 1418



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 61/293 (20%), Positives = 127/293 (43%), Gaps = 8/293 (2%)

Query: 137  RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC--R 194
            +++  + V  + TF +I D+ C   + D A   F+++   G   ++V  NSL+  +C  R
Sbjct: 1148 QMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSR 1207

Query: 195  QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV 254
            + +Q    L  + R K+   PD  ++  +++G  K   V+ A K F +M+      P+ V
Sbjct: 1208 RFDQAEYLLREMTR-KQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSD-GLAPDDV 1265

Query: 255  LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314
              Y   + +L + + +DEA   L +M      P    +   +D   K  +   A+++  +
Sbjct: 1266 -TYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQL 1324

Query: 315  MVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN 374
            ++  G    P+++ ++  I  L     +       + M+  G  PD++TYN + +     
Sbjct: 1325 LLSKGS--YPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDA 1382

Query: 375  KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE-PEIAIEIWNYILENG 426
                +    F  M +   +P      T +  L+D     ++  E+   +++ G
Sbjct: 1383 SLTEDAVDLFEVMRQCGCEPDNATYTTLVGHLVDKKSYKDLLAEVSKSMVDTG 1435



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 98/218 (44%), Gaps = 5/218 (2%)

Query: 260  FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG 319
             L  L+R K+  +AL+  R      C P +  F+  +  L +  D   A +L   M   G
Sbjct: 850  LLQALLRLKRPKDALQVYR--NKLCCSPNMFTFTILIHGLCRAGDIGTAYELLKEMPRHG 907

Query: 320  FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFP-DSLTYNMIFECLIKNKRVH 378
              +  N+I++N VI  LC+   +D+    F +M   G+ P D  TY+ I + L+K+ +V 
Sbjct: 908  --VPQNVILHNVVIKGLCSARKLDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVD 965

Query: 379  EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 438
            +  +   +M+     P  +  ++ +  L  A + + A  +   +  +G  P   + N ++
Sbjct: 966  DACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTII 1025

Query: 439  VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
             G   LGR+ +     EEM++       VT   L  AF
Sbjct: 1026 DGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAF 1063


>gi|413949009|gb|AFW81658.1| hypothetical protein ZEAMMB73_233967 [Zea mays]
          Length = 637

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 102/421 (24%), Positives = 187/421 (44%), Gaps = 10/421 (2%)

Query: 56  ICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA--GRGQRLSP 113
           I +++A  +  ++E+AL+         +V  VL     +   +  FFRWA    G   + 
Sbjct: 167 IADVIAAGADANLEAALSALSPPLCEAVVLAVLHRFKHAHRPSYRFFRWATASGGFTHTT 226

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
             +  M+ +LGK  +FE M   ++ M + G LS+  F     S+  AG+   AV  F++M
Sbjct: 227 ITYCKMLLILGKTRQFESMVALLQEMGKAGTLSMDAFKVAIKSFAAAGEIKNAVGVFELM 286

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
             +G +  V + N LL A+   E     A +  +++     PD  S+  L+  W    N+
Sbjct: 287 RKNGFDDGVESFNCLLVALA-NEGLGREARQVFDKMLGQYSPDLRSYTALMLAWCNARNL 345

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            EA + + EM+E+    P+ V+ + T +  L+RG++  EA+K   +MK +   P +  ++
Sbjct: 346 VEAGRVWNEMLEK-GMKPD-VVVHNTMIEGLLRGQRQHEAVKMFELMKAKGPPPNVWTYT 403

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +    K      A++ ++ M        P++  Y  ++    N   +D V    ++M 
Sbjct: 404 MLICNHCKRGKMDMAMECFEEMQEA--RCQPDVATYTCLLVGYGNAKRMDRVTAVLEEMT 461

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT--PLNCATAITMLLDADE 411
             G  PD+ TYN + + L   K   +  + + +MIK    PT    N       L D + 
Sbjct: 462 QKGCPPDARTYNALIKLLTNRKMPDDAARIYKKMIKKGLDPTIHTYNMMMKSYFLGDRNY 521

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK 471
             +   +W  +   GI P   S    + G    GR  +  ++ EEM+N+ +   ++  +K
Sbjct: 522 -AMGCAVWEEMHRRGICPDVNSYTVFISGHIRHGRPEEAYKYIEEMINKGMKAPQIDCNK 580

Query: 472 L 472
            
Sbjct: 581 F 581


>gi|297828902|ref|XP_002882333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328173|gb|EFH58592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 506

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 97/366 (26%), Positives = 169/366 (46%), Gaps = 44/366 (12%)

Query: 64  SSDDIESALA----CTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA--GRGQRLSPYAWN 117
           S DD+   L+    C  +  +  LV+++L    D   SA+    WA   +G + S  A++
Sbjct: 64  SEDDVFKRLSNDEICNRVNLSDGLVYKLLHRFRDDWKSALGVLNWAESCKGHKHSNDAYD 123

Query: 118 LMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           + VD+LGK  +++++   V  M+ D +++L T A I   + GAG+++EAV  FD +   G
Sbjct: 124 MAVDILGKAKKWDRLKVFVERMRGDKLVTLNTIAKIMRRFAGAGEWEEAVGIFDKLGEFG 183

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
           +E++  ++N LL  +C+ E +  +A   L  +K  + P+  +F I + GW K   VEEA 
Sbjct: 184 LEKNTESMNLLLDTLCK-EKRVEQARVVLLELKSHITPNAHTFNIFIHGWCKANRVEEAL 242

Query: 238 KTFGEM-------------------------VERFEW--------NPEHVLAYETFLITL 264
            T  EM                         V+ +E         +P + + Y T + +L
Sbjct: 243 WTIQEMKGHGFRPCVISYTTIIRCYCQQSEFVKVYEMLSEMEANGSPPNSITYTTIMSSL 302

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI-MVGIGFNLM 323
              K+ +EAL+    MK   C P   F++  +  L +      A +++ + M  +G ++ 
Sbjct: 303 NAQKEFEEALRVATRMKRSGCQPDSLFYNCLIHTLARSGRLEEAERVFRVEMPELGVSI- 361

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG-AFPDSLTYNMIFECLIKNKRVHEVEK 382
            N   YN++I + C++D+ D       +M       PD  TY  +     K   V EV K
Sbjct: 362 -NTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVEVGK 420

Query: 383 FFHEMI 388
              EM+
Sbjct: 421 LLKEMV 426



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 77/185 (41%), Gaps = 9/185 (4%)

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVE-RFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
           ++ A ++  +   G  EEA   F ++ E   E N E   +    L TL + K+V++A   
Sbjct: 154 NTIAKIMRRFAGAGEWEEAVGIFDKLGEFGLEKNTE---SMNLLLDTLCKEKRVEQARVV 210

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLL 336
           L  +K  +  P    F+  +    K N    A  LW I    G    P +I Y  +I   
Sbjct: 211 LLELKS-HITPNAHTFNIFIHGWCKANRVEEA--LWTIQEMKGHGFRPCVISYTTIIRCY 267

Query: 337 CNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 396
           C   +   V+    +M  +G+ P+S+TY  I   L   K   E  +    M ++  QP  
Sbjct: 268 CQQSEFVKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCQPDS 327

Query: 397 L--NC 399
           L  NC
Sbjct: 328 LFYNC 332



 Score = 45.8 bits (107), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 59/145 (40%), Gaps = 1/145 (0%)

Query: 314 IMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 373
           +++ +  ++ PN   +N  I   C  + V+       +M  HG  P  ++Y  I  C  +
Sbjct: 210 VLLELKSHITPNAHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQ 269

Query: 374 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 433
                +V +   EM  N   P  +   T ++ L    E E A+ +   +  +G  P    
Sbjct: 270 QSEFVKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCQPDSLF 329

Query: 434 ANELLVGLRNLGRLSDVRR-FAEEM 457
            N L+  L   GRL +  R F  EM
Sbjct: 330 YNCLIHTLARSGRLEEAERVFRVEM 354



 Score = 39.7 bits (91), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 5/136 (3%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFAS-IFDSYCGAGKYDEAVMSFDV- 172
            +  ++  L     FE+       MK  G      F + +  +   +G+ +EA   F V 
Sbjct: 294 TYTTIMSSLNAQKEFEEALRVATRMKRSGCQPDSLFYNCLIHTLARSGRLEEAERVFRVE 353

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK--IVDPDGDSFAILLEGWEKE 230
           M   GV  +    NS+++  C  + +  +A+E L  ++   + +PD  ++  LL    K 
Sbjct: 354 MPELGVSINTSTYNSMIAMYCHHDEE-DKAIELLKEMESSNLCNPDVHTYQPLLRSCFKR 412

Query: 231 GNVEEANKTFGEMVER 246
           G+V E  K   EMV +
Sbjct: 413 GDVVEVGKLLKEMVTK 428


>gi|449511317|ref|XP_004163923.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Cucumis sativus]
          Length = 495

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 188/409 (45%), Gaps = 15/409 (3%)

Query: 59  ILAHASSDDIESALACTGIIPTPDLVHEVLQ---LSYDSPSSAVDFFRWAG--RGQRLSP 113
           I   +SS D++ +L  + +  + +L+  VL+    S+ +P  A++FF +    RG   + 
Sbjct: 49  ITTSSSSTDMKHSLESSRVFLSNELIDGVLKRVRFSHGNPLQALEFFNYTAKRRGFYHTS 108

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVR--VMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
           ++ + M+ +LG++ +F+++W+ +     K+  ++SL T   +           + V SF 
Sbjct: 109 FSVDTMLYILGRSRKFDKIWDVLLDVKFKDPSLISLRTVMVVLGRIAKVCSVRQTVESFR 168

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
                  E DV   N+LL  +C QE     A    + +K +  P+  +F ILL GW+   
Sbjct: 169 KFKKFVPEFDVTCFNALLRTLC-QEKSMMDARNVYHGLKSMFRPNLQTFNILLSGWKSS- 226

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
             EEA   F EM+E     P+ V++Y   +    + +++D+A K +  M+ E+    +  
Sbjct: 227 --EEAEGFFDEMIE-MGVKPD-VVSYNCLVDVYCKNREMDKAFKVVGKMRDEDIPADVIT 282

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           +++ +  L  +     A  +   M   G    P++  YNA I   C    +   F   D+
Sbjct: 283 YTSIIGGLGLVGQPDKARNILKEMKEYG--CYPDVAAYNATIRNFCIAKRLHEAFDLLDE 340

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           MV  G  P++ TYN+ F     +  +      +  M+     P   +C   + +    ++
Sbjct: 341 MVNKGLSPNATTYNLFFRIFFWSNDLQSAWNLYRRMMDTGCLPNTQSCLFLVRLFKKYEK 400

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
            E+A+E+WN +++ G       + EL   L +LG+L +      +M+++
Sbjct: 401 EEMALELWNDMIQKGFGSYILVSEELFDLLCDLGKLIEAESCFLQMVDK 449


>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 594

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/389 (25%), Positives = 182/389 (46%), Gaps = 11/389 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE-DGVLSLPTFASIFDSYCGAGKYDE 165
           RG + + Y   ++V+ L K G+       ++ M E D    + +++ I DS C     +E
Sbjct: 203 RGYQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNE 262

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           AV  F  M   G+   VV  NSL+  +C        ++ F   ++  + PD  +F+IL++
Sbjct: 263 AVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVD 322

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
              KEG V EA   FG+M++     P+ ++ Y + +  + +     E+   L  M   N 
Sbjct: 323 ALCKEGVVLEALSVFGKMIQ-IAMEPD-IVTYSSLIHGVCKSSLWKESSTLLNEMLSRNI 380

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P +  FS  +D+  K    + A  + ++M+  G  L PN++ YN+++   C +  +D  
Sbjct: 381 RPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERG--LRPNVVTYNSLMDGYCLHSQMDEA 438

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
            + FD MV  G  PD L+YN++ +   K++R+ E ++ F EM      P  +   T I+ 
Sbjct: 439 RKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISG 498

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI--- 462
           L  A  P  A E++  +  +G  P   + + LL G    G L +     E +   ++   
Sbjct: 499 LCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHLDEALALFEALKKSQLKPN 558

Query: 463 -LIYEVTMHKLKKAFYNESRSMRDIFDSL 490
            +I ++ +  + KA   +    +++F SL
Sbjct: 559 HVICKILLGGMCKA--GKLEDAKELFSSL 585



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 77/369 (20%), Positives = 149/369 (40%), Gaps = 43/369 (11%)

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFA 221
           YD  V  +  M   GV   V  +  L++ +C   +        L ++ K+   P   +F 
Sbjct: 120 YDSVVSIYRKMEFFGVSCSVYTLTILINCLCHL-HLVGLGFSVLGKIFKLGFKPSIITFN 178

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L+ G   EG + EA +    ++ R  + P  V  +   +  L +  +   A+ +++ M 
Sbjct: 179 TLINGLCIEGRIVEAMEQLDYIMSR-GYQPT-VYTHTMIVNGLCKIGKTSAAIVWMKKMV 236

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
             +C P +  +S  +D L K      AV L+  M  IG +  P ++ YN++I  +CN+  
Sbjct: 237 ELDCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGIS--PTVVTYNSLIYGMCNSGQ 294

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
                  F +M+     PD +T++++ + L K   V E    F +MI+   +P  +  ++
Sbjct: 295 WKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSS 354

Query: 402 AI-----------------TMLLDADEPE-IAIEIW-----------------NYILENG 426
            I                  ML     P+ +   IW                 N ++E G
Sbjct: 355 LIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERG 414

Query: 427 ILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMR 484
           + P   + N L+ G     ++ + R+  + M+N+      ++ + L K +    R    +
Sbjct: 415 LRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAK 474

Query: 485 DIFDSLERR 493
            +FD +  +
Sbjct: 475 QLFDEMSHK 483



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/221 (21%), Positives = 88/221 (39%), Gaps = 33/221 (14%)

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM--------------- 315
           D+AL +   M   N FP +  F+  L  LV++      V ++  M               
Sbjct: 86  DDALAYFNQMVHMNPFPCITQFNQLLAALVRMKHYDSVVSIYRKMEFFGVSCSVYTLTIL 145

Query: 316 ---------VGIGFNLM---------PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGA 357
                    VG+GF+++         P++I +N +I  LC    +       D ++  G 
Sbjct: 146 INCLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIEGRIVEAMEQLDYIMSRGY 205

Query: 358 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 417
            P   T+ MI   L K  +      +  +M++ + +P  ++ +  I  L        A++
Sbjct: 206 QPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVD 265

Query: 418 IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
           ++ ++   GI P   + N L+ G+ N G+        +EML
Sbjct: 266 LFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEML 306


>gi|356541430|ref|XP_003539180.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Glycine max]
          Length = 492

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 107/402 (26%), Positives = 180/402 (44%), Gaps = 13/402 (3%)

Query: 36  TRPRFPTHL--DAPYIS-SSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSY 92
           ++  F  HL  DA  I+ +S   I +++  +    +  AL    I  TP+LV++ L+  +
Sbjct: 18  SKKYFQFHLPRDAVNIAEASDATIAKLVLESDPRTLSEALTKPRIHWTPELVNKTLKRLW 77

Query: 93  DSPSSAVDFFRWAGR---GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP- 148
           +    A+ FF+   R       SP +++  VD+  +   F   W  V  M+   +   P 
Sbjct: 78  NHGPKALLFFKHLDRHLPSYTHSPSSFDHAVDIAARMRDFNSAWALVGRMRSLRLGPSPK 137

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T A + + Y   GK   AV +F  M  HG+ QD+ + N+LL  +C+  N+   A + L  
Sbjct: 138 TLAILAERYASIGKPHRAVRTFLSMHEHGLHQDLHSFNTLLDILCKS-NRVETAHDLLRT 196

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           +K    PD  S+ IL  G+  +     A +   EMV+R    P  V  Y T L    R  
Sbjct: 197 LKSRFRPDTVSYNILANGYCLKKRTPMALRVLKEMVQR-GIEPTMV-TYNTMLKGYFRSN 254

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           Q+ EA +F   MK   C   +  ++  +    +  +   A +++D MV  G  + PN+  
Sbjct: 255 QIKEAWEFYLEMKKRKCEIDVVSYTTVIHGFGEAGEVKKAKRVFDEMVKEG--VAPNVAT 312

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAF-PDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
           YNA+I + C  D V N    F++MV  G   P+ +T+N++   L     +     F   M
Sbjct: 313 YNALIQVFCKKDSVQNAVAVFEEMVREGVCSPNVVTFNVVIRGLCHVGDMERALGFMERM 372

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
            ++  + +       I    DA E E  +E++  + +   LP
Sbjct: 373 GEHGLRASVQTYNVVIRYFCDAGEIEKGLEVFGKMGDGLCLP 414



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 96/426 (22%), Positives = 168/426 (39%), Gaps = 57/426 (13%)

Query: 33  HRPTRPRFPTHLD---APYISSSARIICEILAHASSDDIESALACTG------IIPTPDL 83
           H P    F  HLD     Y  S +     +   A   D  SA A  G      + P+P  
Sbjct: 79  HGPKALLFFKHLDRHLPSYTHSPSSFDHAVDIAARMRDFNSAWALVGRMRSLRLGPSPKT 138

Query: 84  VHEVLQLSYDS---PSSAV-DFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM 139
           +  +L   Y S   P  AV  F      G     +++N ++D+L K+ R E   + +R +
Sbjct: 139 L-AILAERYASIGKPHRAVRTFLSMHEHGLHQDLHSFNTLLDILCKSNRVETAHDLLRTL 197

Query: 140 KEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQT 199
           K        ++  + + YC   +   A+     M   G+E  +V  N++L    R  NQ 
Sbjct: 198 KSRFRPDTVSYNILANGYCLKKRTPMALRVLKEMVQRGIEPTMVTYNTMLKGYFRS-NQI 256

Query: 200 SRALEF-LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYE 258
             A EF L   K+  + D  S+  ++ G+ + G V++A + F EMV+             
Sbjct: 257 KEAWEFYLEMKKRKCEIDVVSYTTVIHGFGEAGEVKKAKRVFDEMVK------------- 303

Query: 259 TFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI 318
                                   E   P +  ++  + +  K +   +AV +++ MV  
Sbjct: 304 ------------------------EGVAPNVATYNALIQVFCKKDSVQNAVAVFEEMVRE 339

Query: 319 GFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVH 378
           G    PN++ +N VI  LC+  D++    F ++M  HG      TYN++         + 
Sbjct: 340 GV-CSPNVVTFNVVIRGLCHVGDMERALGFMERMGEHGLRASVQTYNVVIRYFCDAGEIE 398

Query: 379 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE---IAIEIWNYILENGILPLEASAN 435
           +  + F +M      P        I+ +    + E   +A ++   ++E G LP + + N
Sbjct: 399 KGLEVFGKMGDGLCLPNLDTYNVLISAMFVRKKSEDLVVAGKLLMEMVERGFLPRKFTFN 458

Query: 436 ELLVGL 441
            +L GL
Sbjct: 459 RVLNGL 464


>gi|297834384|ref|XP_002885074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330914|gb|EFH61333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 517

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 112/442 (25%), Positives = 204/442 (46%), Gaps = 22/442 (4%)

Query: 28  TSHNPHRPTRP-RFPTHLDAPYISSSARIICEILAH---ASSDDIESALACTGIIPTPDL 83
            +H  H    P +FP   +      SA  +  I+ H   +S ++IE  L   GI  T +L
Sbjct: 51  ATHFLHSLAAPDKFPNGFN-----QSAVDVHNIIKHHRGSSPEEIERILDKCGIQLTEEL 105

Query: 84  VHEVLQLSYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWNAVRVM-K 140
           V EV+  +      A    R   +      S   +N ++DVLGK  RFE+    V  M K
Sbjct: 106 VFEVVNRNRSDWKPAYILSRLIVKHSVYISSSLVYNEILDVLGKMRRFEEFHQVVDEMSK 165

Query: 141 EDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS 200
            DG +   T+  + + Y  A K DEAV  F+     G+E D+VA + LL  +CR ++   
Sbjct: 166 RDGFVDEKTYEVLLNRYAAAHKVDEAVGVFERRREFGIEDDLVAFHGLLMWLCRYKHVEF 225

Query: 201 RALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF 260
               F +R ++    D  +  I+L GW   GNV EA + + +++   +  P+ V++Y T 
Sbjct: 226 AETLFCSRRREF-GCDIRTMNIILNGWCVLGNVHEAKRIWKDIIAS-KCKPD-VVSYGTM 282

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF 320
           +  L +  ++ +A++  R +      P +K  +N +D L        A++++  M   G 
Sbjct: 283 INALTKKGKLGKAMELYRALWETGRNPDVKICNNVIDALCFKKRIPEALEVFKEMSEKGP 342

Query: 321 NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGA--FPDSLTYNMIFECLIKNKRVH 378
           +  PN++ YN+++  LC     + V+   ++M   G    P+ +T+  +   L  ++R  
Sbjct: 343 S--PNVVTYNSLLKHLCKIRRTEKVWELVEEMEHKGGSCSPNDVTFGYL---LKYSQRSK 397

Query: 379 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 438
           +V+     M KN+ + T         + +  D  E   EIW  +  +G+ P + +    +
Sbjct: 398 DVDAVLERMAKNKCEMTSDLYNLMFRLYVQWDNEEKVREIWGEMERSGLGPDQRTYTIRI 457

Query: 439 VGLRNLGRLSDVRRFAEEMLNR 460
            GL   G++ +   + +EM+++
Sbjct: 458 HGLHTKGKIGEALSYFQEMMSK 479


>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 665

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 166/359 (46%), Gaps = 16/359 (4%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMK--ED--GVLSLPTFASIFDSYCGAGK 162
           RG      A   ++  L K G+    W A RVM+  ED   V  + T+  +   YC  G+
Sbjct: 139 RGDIPDIIACTSLIRGLCKTGK---TWKATRVMEILEDSGAVPDVITYNVLISGYCKTGE 195

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFA 221
              A+   D MS   V  DVV  N++L  +C    +   A+E L+R +++   PD  ++ 
Sbjct: 196 IGSALQLLDRMS---VSPDVVTYNTILRTLC-DSGKLKEAMEVLDRQMQRECYPDVITYT 251

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           IL+E   KE  V +A K   EM ++    P+ V+ Y   +  + +  ++DEA++FL  M 
Sbjct: 252 ILIEATCKESGVGQAMKLLDEMRDK-GCKPD-VVTYNVLINGICKEGRLDEAIRFLNHMP 309

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
              C P +   +  L  +        A +    M+  G +  P+++ +N +I  LC    
Sbjct: 310 SYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCS--PSVVTFNILINFLCRKGL 367

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
           +       ++M  HG  P+SL+YN +   L K+K++    ++   M+     P  +   T
Sbjct: 368 IGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNT 427

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
            +T L    + ++A+EI N +   G  P+  + N ++ GL  +G+  D  +  +EM  +
Sbjct: 428 LLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGK 486



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 85/359 (23%), Positives = 161/359 (44%), Gaps = 23/359 (6%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            + ++++   K     Q    +  M++ G    + T+  + +  C  G+ DEA+   + M
Sbjct: 249 TYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHM 308

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSR---ALEFLNR-VKKIVDPDGDSFAILLEGWEK 229
             +G + +V+  N +L ++C     T R   A +FL   ++K   P   +F IL+    +
Sbjct: 309 PSYGCQPNVITHNIILRSMC----STGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCR 364

Query: 230 EGNVEEANKTFGEMVERFEWNPEH-----VLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           +G +       G  ++  E  P+H      L+Y   L  L + K+++ A+++L +M    
Sbjct: 365 KGLI-------GRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRG 417

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
           C+P +  ++  L  L K      AV++ + +   G +  P LI YN VI  L      D+
Sbjct: 418 CYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCS--PVLITYNTVIDGLSKVGKTDD 475

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
             +  D+M   G  PD +TY+ +   L +  +V E   FFH++ +   +P  +   + + 
Sbjct: 476 AIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIML 535

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
            L  A +   AI+   Y++  G  P E S   L+ GL   G   +      E+ +R ++
Sbjct: 536 GLCKARQTVRAIDFLAYMVARGCKPTETSYMILIEGLAYEGLAKEALELLNELCSRGVV 594



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 102/232 (43%), Gaps = 7/232 (3%)

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           + G +EE  K   +MV R +  P+ ++A  + +  L +  +  +A + + +++     P 
Sbjct: 122 RNGELEEGFKFLEDMVCRGDI-PD-IIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPD 179

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
           +  ++  +    K  +   A+QL D M     ++ P+++ YN ++  LC++  +      
Sbjct: 180 VITYNVLISGYCKTGEIGSALQLLDRM-----SVSPDVVTYNTILRTLCDSGKLKEAMEV 234

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
            D+ +    +PD +TY ++ E   K   V +  K   EM     +P  +     I  +  
Sbjct: 235 LDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICK 294

Query: 409 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
               + AI   N++   G  P   + N +L  + + GR  D  +F  EM+ +
Sbjct: 295 EGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRK 346


>gi|296081511|emb|CBI20034.3| unnamed protein product [Vitis vinifera]
          Length = 596

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 175/354 (49%), Gaps = 11/354 (3%)

Query: 45  DAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRW 104
           D   +S   R+I E+ A     ++E+ L    +  +  LV  VL+    +   A  FF W
Sbjct: 156 DPEEVSRVCRVIDELFA--LDRNMEAVLDECNVDLSHALVVGVLERFKHARKPAFRFFCW 213

Query: 105 AGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK 162
           AG+  G   +   +N M+ VLG+  +FE M   +  M E G+L++ TF+    ++  A +
Sbjct: 214 AGQKAGFTHNSRTYNAMMSVLGRTRQFESMMGMLGEMGEKGLLTMETFSIAIKAFAAAKE 273

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE-NQTSRALEFLNRVKKIVDPDGDSFA 221
             +AV  F++M  +  +  V  +N LL  + R +  + ++AL    +++    P+  ++ 
Sbjct: 274 RKKAVGVFELMKRYNFDAGVDTINCLLDNLGRAKLGKEAQAL--FEKLEDRFTPNLRTYT 331

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           +LL GW +  N+ EA +T+ EM+++  + P+ ++A+ T L  L++ K+  +A+K   VMK
Sbjct: 332 VLLNGWCRIKNLVEAGRTWNEMIDK-GFKPD-IIAHHTMLEGLLKCKKKSDAIKLFEVMK 389

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
            +   P ++ ++  +  L K      AV+ +D MV  G    P+  +Y  +I    N   
Sbjct: 390 AKGPSPNVRTYTILIRDLCKQMKMQEAVEYFDEMVDSG--CQPDAAVYTCLITGFGNQKK 447

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 395
           +D V+    +M   G   D  TYN + + +   +   +  + + +MI+N  Q T
Sbjct: 448 MDKVYALLKEMKEKGCPADGRTYNALIKLMTNRQMPDDAVRIYKKMIQNGIQST 501



 Score = 45.8 bits (107), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 47/233 (20%), Positives = 88/233 (37%), Gaps = 33/233 (14%)

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
           Y   +  L R +Q +  +  L  M GE    T++ FS A+       +   AV ++++M 
Sbjct: 227 YNAMMSVLGRTRQFESMMGMLGEM-GEKGLLTMETFSIAIKAFAAAKERKKAVGVFELMK 285

Query: 317 GIGFN--------------------------------LMPNLIMYNAVIGLLCNNDDVDN 344
              F+                                  PNL  Y  ++   C   ++  
Sbjct: 286 RYNFDAGVDTINCLLDNLGRAKLGKEAQALFEKLEDRFTPNLRTYTVLLNGWCRIKNLVE 345

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
             R +++M+  G  PD + ++ + E L+K K+  +  K F  M      P        I 
Sbjct: 346 AGRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAKGPSPNVRTYTILIR 405

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
            L    + + A+E ++ ++++G  P  A    L+ G  N  ++  V    +EM
Sbjct: 406 DLCKQMKMQEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYALLKEM 458


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 113/474 (23%), Positives = 192/474 (40%), Gaps = 81/474 (17%)

Query: 97  SAVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASI 153
           SA+  F+         P  + ++ +VD L K+G+ +     V  M   G   ++ T++S+
Sbjct: 202 SALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSL 261

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV 213
               C AGK DEA      M+  G   ++V  N+++   C+      R  E  + ++++V
Sbjct: 262 LHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCK----LGRIDEAYHLLEEMV 317

Query: 214 D----PDGDSFAILLEGWEKEGNVEEANKTFGEMVER------FEWNP------------ 251
           D    P+  ++ +LL+ + K G  E+A      MVE+      F +N             
Sbjct: 318 DGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVE 377

Query: 252 ---------------EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
                           +V++Y T +  L +  +V E +  L  M   NC P +  F+  +
Sbjct: 378 RACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTII 437

Query: 297 DILVKLNDSTHAVQLWDIM--VGIGFNLM------------------------------- 323
           D + K      A +L++++   G   NL+                               
Sbjct: 438 DAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGC 497

Query: 324 -PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
            P++I YN VI  LC +  VD  ++ F QM+  G  PD +TY+++   L K + + E   
Sbjct: 498 SPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANN 557

Query: 383 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 442
               M+KN + P  +   T I         + A+EI   +L  G  P   + +  +  L 
Sbjct: 558 VLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLS 617

Query: 443 NLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLE--RRC 494
             GRL       E ML   ++   VT + L K F + SR+  D  D  E  R+C
Sbjct: 618 KRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASRT-EDAVDLFEVMRQC 670



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/422 (20%), Positives = 182/422 (43%), Gaps = 39/422 (9%)

Query: 96  SSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           S AV  FR   +        +N M++ L K+ R +     +  M ++G   ++ ++ ++ 
Sbjct: 27  SDAVLHFREMSKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVL 86

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIV 213
             +C A + + A+   + M M G   DVV+  ++++ +C+ + Q   A   +++ +++  
Sbjct: 87  HGFCKANRVENALWLLEQMVMRGCPPDVVSYTTVINGLCKLD-QVDEACRVMDKMIQRGC 145

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVER------FEWN----------------- 250
            P+  ++  L++G+ + G+++ A +   +M ER        +N                 
Sbjct: 146 QPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQ 205

Query: 251 -----------PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299
                      P  V  Y T + +L++  +VD+A + +  M  + C P +  +S+ L  L
Sbjct: 206 LFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGL 265

Query: 300 VKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFP 359
            K      A  L   M   G +  PN++ YN +I   C    +D  +   ++MV  G  P
Sbjct: 266 CKAGKLDEATALLQRMTRSGCS--PNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQP 323

Query: 360 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 419
           + +TY ++ +   K  +  +       M++  + P      + + M    DE E A ++ 
Sbjct: 324 NVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLL 383

Query: 420 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 479
           + +++ G +P   S N ++ GL    ++ +     E+ML+   +   VT + +  A    
Sbjct: 384 SSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKT 443

Query: 480 SR 481
            R
Sbjct: 444 YR 445



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 153/330 (46%), Gaps = 14/330 (4%)

Query: 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK 211
           SI    C AG+  +AV+ F  MS      D V  N++++ +    +++ R  + +  +++
Sbjct: 15  SILRGLCDAGQCSDAVLHFREMS-KTCPPDSVTYNTMINGL----SKSDRLDDAIRLLEE 69

Query: 212 IVD----PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           +VD    P+  S+  +L G+ K   VE A     +MV R    P  V++Y T +  L + 
Sbjct: 70  MVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMR--GCPPDVVSYTTVINGLCKL 127

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
            QVDEA + +  M    C P +  +   +D   ++ D   AV+L   M   G+   PN I
Sbjct: 128 DQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYR--PNAI 185

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFP-DSLTYNMIFECLIKNKRVHEVEKFFHE 386
            YN ++  LC+   +D+  + F +M   G+ P D  TY+ I + L+K+ +V +  +    
Sbjct: 186 TYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEA 245

Query: 387 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 446
           M+     P  +  ++ +  L  A + + A  +   +  +G  P   + N ++ G   LGR
Sbjct: 246 MVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGR 305

Query: 447 LSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
           + +     EEM++       VT   L  AF
Sbjct: 306 IDEAYHLLEEMVDGGCQPNVVTYTVLLDAF 335



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 129/264 (48%), Gaps = 8/264 (3%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N ++D + K  R +  +    +++E G   +L T+ S+    C + ++D+A      M
Sbjct: 432 TFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREM 491

Query: 174 S-MHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAILLEGWEKEG 231
           +   G   D++  N+++  +C+ + +  RA + FL  +   + PD  +++I++    K  
Sbjct: 492 TRKQGCSPDIITYNTVIDGLCKSK-RVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWR 550

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            ++EAN    E++ +  ++P   + Y T +    +   +D+AL+ L+++  +  +P +  
Sbjct: 551 FMDEANNVL-ELMLKNGFDP-GAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVT 608

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           FS  +D L K      A +L + M+  G  L+P+ + YN ++   C+    ++    F+ 
Sbjct: 609 FSIFIDWLSKRGRLRQAGELLETMLRAG--LVPDTVTYNTLLKGFCDASRTEDAVDLFEV 666

Query: 352 MVFHGAFPDSLTYNMIFECLIKNK 375
           M   G  PD+ TY  +   L+  K
Sbjct: 667 MRQCGCEPDNATYTTLVGHLVDKK 690



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 92/205 (44%), Gaps = 3/205 (1%)

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
           H   +++ L  L    Q  +A+   R M  + C P    ++  ++ L K +    A++L 
Sbjct: 9   HAGVHKSILRGLCDAGQCSDAVLHFREMS-KTCPPDSVTYNTMINGLSKSDRLDDAIRLL 67

Query: 313 DIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 372
           + MV  GF   PN+  YN V+   C  + V+N     +QMV  G  PD ++Y  +   L 
Sbjct: 68  EEMVDNGF--APNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTTVINGLC 125

Query: 373 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 432
           K  +V E  +   +MI+   QP  +   T +       + + A+E+   + E G  P   
Sbjct: 126 KLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAI 185

Query: 433 SANELLVGLRNLGRLSDVRRFAEEM 457
           + N ++ GL +  +L    +  +EM
Sbjct: 186 TYNNIMHGLCSGRKLDSALQLFKEM 210



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 66/351 (18%), Positives = 138/351 (39%), Gaps = 42/351 (11%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +N ++D+  K    E+    +  M + G + ++ ++ ++    C A K  E V+  + 
Sbjct: 361 FTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQ 420

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEG 231
           M  +    D+V  N+++ A+C+   +   A E  N +++    P+  ++  L+ G  K  
Sbjct: 421 MLSNNCVPDIVTFNTIIDAMCKTY-RVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSR 479

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
             ++A     EM  +   +P+ ++ Y T +  L + K+VD A K    M  +   P    
Sbjct: 480 RFDQAEYLLREMTRKQGCSPD-IITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVT 538

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           +S  +  L K      A  + ++M+  GF+  P  I Y  +I   C   ++D        
Sbjct: 539 YSIVISSLCKWRFMDEANNVLELMLKNGFD--PGAITYGTLIDGFCKTGNLDKALEILQL 596

Query: 352 MVFHGAFPD-----------------------------------SLTYNMIFECLIKNKR 376
           ++  G++PD                                   ++TYN + +      R
Sbjct: 597 LLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASR 656

Query: 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE-PEIAIEIWNYILENG 426
             +    F  M +   +P      T +  L+D     ++  E+   +++ G
Sbjct: 657 TEDAVDLFEVMRQCGCEPDNATYTTLVGHLVDKKSYKDLLAEVSKSMVDTG 707


>gi|308082018|ref|NP_001183846.1| uncharacterized protein LOC100502439 [Zea mays]
 gi|238014984|gb|ACR38527.1| unknown [Zea mays]
 gi|414872746|tpg|DAA51303.1| TPA: hypothetical protein ZEAMMB73_971718 [Zea mays]
          Length = 623

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 104/427 (24%), Positives = 177/427 (41%), Gaps = 41/427 (9%)

Query: 63  ASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYA--WNLMV 120
           AS + I   + C  +  +  LV +VL    +   +A  FF WAG  +     A  +++MV
Sbjct: 145 ASPEAIVITMDCCPVRVSARLVSKVLSRFSNDWVAAFGFFMWAGTQEGYCHCADSYDMMV 204

Query: 121 DVLGKNGRFEQMWNAVRVMKE-DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVE 179
           D+LGK  +F+ M   +  M E  G++SL T   +    CGA ++ +A+ +F  M   GV 
Sbjct: 205 DILGKFKQFDLMCGLIGQMHEIGGLVSLATMTKVMRRLCGANRWSDAIDAFHKMDRFGVA 264

Query: 180 QDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKT 239
           +D  A+N LL  +C+ E    RA      +K  + PD  SF  L+ GW K   ++EA +T
Sbjct: 265 KDTKAMNVLLDTLCK-ERSVKRARGAFQALKGTIPPDESSFNTLVHGWCKARMLKEARET 323

Query: 240 FGEMVERFEWNPE----------------------------------HVLAYETFLITLI 265
             EM ER  ++P                                   +++ Y   +  L 
Sbjct: 324 MKEM-ERHGFSPSVTTYTCLIEAYCMEKDFQTVDGILDEMHTKGCTPNIITYTIVMHALG 382

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN 325
           +  +  EAL     +K + C     F++  + IL +      A  + + M   G +  PN
Sbjct: 383 KAGRTQEALDTFDKVKQDGCALDASFYNCLIYILCRAGRLQDANFVVEEMHRTGIS--PN 440

Query: 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 385
           L  +N +I   C++   +N  +   QM      PD  TY  + +   + K V  +     
Sbjct: 441 LTTFNTLISAACDHSLAENALKLLVQMEEQSCNPDIKTYTPLLKLCCRRKWVKTLLFLIC 500

Query: 386 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
            M + +  P        +  L        +      ++  G  P +A+ + +L  L+N+ 
Sbjct: 501 HMFRKDITPDFSTYTLLVCWLCRNGRLTQSCLFLEEMVLKGFTPQQATFDLVLEKLKNMH 560

Query: 446 RLSDVRR 452
            LS VR+
Sbjct: 561 MLSAVRK 567


>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Vitis vinifera]
          Length = 772

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 96/389 (24%), Positives = 172/389 (44%), Gaps = 41/389 (10%)

Query: 132 MWNAVRVMKEDGVLSLP----TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS 187
           M  A+R+ ++      P    T   +   YC  G+ +E +   D MS  G   D    NS
Sbjct: 262 MNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNS 321

Query: 188 LLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
           L++ +CR       ALE L+  +++  DPD  ++  L+ G  K G VEEA +   +M+ R
Sbjct: 322 LVNGLCRI-GHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILR 380

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
            +++P  V  Y T + TL +  QV+EA +  RV+  +   P +  F++ +  L   N+  
Sbjct: 381 -DFSPNTV-TYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHR 438

Query: 307 HAVQLWDIMVGIG-------FNLM--------------------------PNLIMYNAVI 333
            A++L++ M   G       +N++                           N++ YN +I
Sbjct: 439 LAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLI 498

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
              C N  ++     FD+M   G   + +TYN + + L KN+RV E  +   +M+    +
Sbjct: 499 DGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLK 558

Query: 394 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 453
           P      + +T    A + + A +I   +  NG  P   +   L++GL   GR+    R 
Sbjct: 559 PDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASRL 618

Query: 454 AEEMLNRRILIYEVTMHKLKKAFYNESRS 482
              +  + +++   T + + KA + E R+
Sbjct: 619 LRTVQLKGMVLAPQTYNPVIKALFREKRT 647



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 106/454 (23%), Positives = 190/454 (41%), Gaps = 48/454 (10%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYA--WNLMVDVLGKNGRFEQMWNAVR 137
           TP  + + L+   D   S +D   WA +     P +  +  ++  LGK+G F  M   ++
Sbjct: 71  TPKQLRDALRRQSDE-DSILDLLDWASKQPNFVPSSVIYEEVLRKLGKDGSFGSMRRVLQ 129

Query: 138 VMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS---------------------- 174
            MK  G  +   TF  + +SY     +DEAV   D+M                       
Sbjct: 130 EMKHTGCEIRRGTFLILIESYAKFELFDEAVAVVDIMEEEFGLKLDAFTYNFLLNVLVDG 189

Query: 175 --------------MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDS 219
                           G++ DV   N L+ A+CR  +Q   A+  +  +    + PD  +
Sbjct: 190 NKLKLVEIVNSRMVSRGIKPDVTTFNILIKALCRA-HQIRPAILMMEEMGSYGLSPDEKT 248

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           F  L++G+ +EGN+  A +   +MV      P   +     +    +  +++E L F+  
Sbjct: 249 FTTLMQGFIEEGNMNGALRIREQMVA--AGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDE 306

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
           M  E   P    F++ ++ L ++    HA+++ D+M+  GF+  P++  YN++I  LC  
Sbjct: 307 MSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFD--PDIFTYNSLIFGLCKL 364

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
            +V+      +QM+     P+++TYN +   L K  +V E  +    +      P     
Sbjct: 365 GEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTF 424

Query: 400 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
            + I  L   +   +A+E++  +   G  P E + N L+  L + GRL +     +EM +
Sbjct: 425 NSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMES 484

Query: 460 RRILIYEVTMHKLKKAFYNESR--SMRDIFDSLE 491
                  VT + L   F    R     +IFD +E
Sbjct: 485 SGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEME 518



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 158/359 (44%), Gaps = 9/359 (2%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKY 163
           +  G R   + +N +V+ L + G  +     + VM ++G    + T+ S+    C  G+ 
Sbjct: 308 SNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEV 367

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV--KKIVDPDGDSFA 221
           +EAV   + M +     + V  N+L+S +C+ ENQ   A E L RV   K + PD  +F 
Sbjct: 368 EEAVEILNQMILRDFSPNTVTYNTLISTLCK-ENQVEEATE-LARVLTSKGILPDVCTFN 425

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L++G     N   A + F EM  +   +P+    Y   + +L    +++EAL  L+ M+
Sbjct: 426 SLIQGLCLTNNHRLAMELFEEMKTK-GCHPDE-FTYNMLIDSLCSRGRLEEALSLLKEME 483

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
              C   +  ++  +D   K      A +++D M   G +   N++ YN +I  LC N  
Sbjct: 484 SSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGIS--RNVVTYNTLIDGLCKNRR 541

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
           V+   +  DQM+  G  PD  TYN +     +   + +       M  N  +P  +   T
Sbjct: 542 VEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGT 601

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
            I  L  A   E+A  +   +   G++    + N ++  L    R S+  R   EM+ +
Sbjct: 602 LILGLSKAGRVELASRLLRTVQLKGMVLAPQTYNPVIKALFREKRTSEAVRLFREMMEK 660



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 73/335 (21%), Positives = 136/335 (40%), Gaps = 44/335 (13%)

Query: 65  SDDIESALACTGIIPTPDLVHEVLQ---LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVD 121
           + ++   L   GI+P     + ++Q   L+ +   +   F     +G     + +N+++D
Sbjct: 405 ATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLID 464

Query: 122 VLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQ 180
            L   GR E+  + ++ M+  G   ++ T+ ++ D +C   + +EA   FD M + G+ +
Sbjct: 465 SLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISR 524

Query: 181 DVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTF 240
           +VV  N+L+  +C+       A      + + + PD  ++  LL  + + G++++A    
Sbjct: 525 NVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIV 584

Query: 241 GEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV 300
             M       P+ V  Y T ++ L +  +V+ A + LR                      
Sbjct: 585 QTMTSN-GCEPDSV-TYGTLILGLSKAGRVELASRLLR---------------------- 620

Query: 301 KLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPD 360
                   VQL       G  L P    YN VI  L          R F +M+  G  PD
Sbjct: 621 -------TVQLK------GMVLAPQ--TYNPVIKALFREKRTSEAVRLFREMMEKGDPPD 665

Query: 361 SLTYNMIFECLIKNKR-VHEVEKFFHEMIKNEWQP 394
           ++TY ++F  L      + E   F  EM    + P
Sbjct: 666 AVTYKVVFRGLCSGGGPIGEAVDFLVEMTDKGFLP 700


>gi|224133408|ref|XP_002321560.1| predicted protein [Populus trichocarpa]
 gi|222868556|gb|EEF05687.1| predicted protein [Populus trichocarpa]
          Length = 491

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 95/381 (24%), Positives = 168/381 (44%), Gaps = 8/381 (2%)

Query: 52  SARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL 111
           +A +   IL  ++   +   L    I  TP LV+ +L+  ++    A+ FF         
Sbjct: 38  AAALATLILTSSNPQALAQTLHSPTIQWTPQLVNTILKRLWNDGPKALQFFNLLSHHPSY 97

Query: 112 S--PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVM 168
           S  P +++  +D+  +      + + V  M+   +   P TFA I + Y  AGK   AV 
Sbjct: 98  SHHPSSYDHAIDISARLRDSPSLRSLVYRMRSARLGPTPKTFAIIAERYASAGKPHRAVK 157

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
            F  M   G  QD+ + N++L  +C+ + +   A       K     D  S+ +++ GW 
Sbjct: 158 VFLSMHQFGCFQDLQSFNTILDVLCKSK-RVEMAYNLFKVFKGKFRADCVSYNVMVNGWC 216

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
                 +A +   EMV+R    P ++ +Y T L    R  Q++EA  F   MK  +C   
Sbjct: 217 LIKRTNKALEMLKEMVKR-GLTP-NLTSYNTMLKGYFRAGQINEAWDFFLEMKKRDCEID 274

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
           +  ++  +       +   A +++D MV  G  ++P++  YNA I +LC  D+VDN    
Sbjct: 275 VITYTTVIHGFGVAGEIKRARKVFDTMVKKG--VLPSVATYNAFIQVLCKKDNVDNAIVI 332

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
           F++MV  G  P+S+TYN++   L     +    +F   M  +  +P        I    D
Sbjct: 333 FEEMVVKGYVPNSITYNLVIRGLCHRGEMERAMEFMGRMKDDGCEPNVQTYNLVIRYFCD 392

Query: 409 ADEPEIAIEIWNYILENGILP 429
             E + A++++  +     LP
Sbjct: 393 EGEIDKALDLFQKMTSGDCLP 413



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 112/269 (41%), Gaps = 18/269 (6%)

Query: 195 QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV 254
           +++ + R+L +  R  ++  P   +FAI+ E +   G    A K F  M +   +  + +
Sbjct: 115 RDSPSLRSLVYRMRSARL-GPTPKTFAIIAERYASAGKPHRAVKVFLSMHQFGCF--QDL 171

Query: 255 LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND------STHA 308
            ++ T L  L + K+V+ A    +V KG       KF ++ +   V +N       +  A
Sbjct: 172 QSFNTILDVLCKSKRVEMAYNLFKVFKG-------KFRADCVSYNVMVNGWCLIKRTNKA 224

Query: 309 VQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIF 368
           +++   MV  G  L PNL  YN ++        ++  + FF +M       D +TY  + 
Sbjct: 225 LEMLKEMVKRG--LTPNLTSYNTMLKGYFRAGQINEAWDFFLEMKKRDCEIDVITYTTVI 282

Query: 369 ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 428
                   +    K F  M+K    P+       I +L   D  + AI I+  ++  G +
Sbjct: 283 HGFGVAGEIKRARKVFDTMVKKGVLPSVATYNAFIQVLCKKDNVDNAIVIFEEMVVKGYV 342

Query: 429 PLEASANELLVGLRNLGRLSDVRRFAEEM 457
           P   + N ++ GL + G +     F   M
Sbjct: 343 PNSITYNLVIRGLCHRGEMERAMEFMGRM 371


>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
 gi|194702156|gb|ACF85162.1| unknown [Zea mays]
 gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
          Length = 567

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 100/398 (25%), Positives = 171/398 (42%), Gaps = 15/398 (3%)

Query: 49  ISSSARIICEILAHASSDDIESALACTGIIPTPD-LVHEVLQLSYDSPSSAVDFFRWAGR 107
           +   A +I ++ A   + D    LA +G    PD +V+  +   Y   +  +D  R    
Sbjct: 104 VGPCAALIKKLCASGRTADARRVLAASG----PDVMVYNAMVAGYCG-AGQLDAARRLVA 158

Query: 108 GQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
              + P  Y +N ++  L   GR       +  M   G L  + T+  + ++ C    Y 
Sbjct: 159 DMPVEPDAYTYNTLIRGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILLEATCKRSGYK 218

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAIL 223
           +A+   D M   G   D+V  N +L+ IC QE +   A+EFL  +     +P+  S+ I+
Sbjct: 219 QAMKLLDEMHDKGCAPDIVTYNVVLNGIC-QEGRVEDAMEFLKNLPSYGCEPNTVSYNIV 277

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           L+G       E+A K   EM  +    P +V+ +   +  L R   V+ A++ L  M   
Sbjct: 278 LKGLFTAERWEDAEKLMEEMAHK--GCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQY 335

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
            C P    ++  L    K      A++  ++MV  G    P+++ YN ++  LC N +VD
Sbjct: 336 GCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRG--CYPDIVSYNTLLTALCRNGEVD 393

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
                  Q+   G  P  ++YN + + L K  +  E  +   EM     QP  +  +T  
Sbjct: 394 VAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYSTIA 453

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 441
           + L   D  E A+  +  + + GI P  A  N +L+GL
Sbjct: 454 SGLCREDRIEEAVRTFCKVQDMGIRPTAALYNAILLGL 491



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 97/389 (24%), Positives = 175/389 (44%), Gaps = 14/389 (3%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
           SP A      ++ K     +  +A RV+   G   +  + ++   YCGAG+ D A     
Sbjct: 100 SPAAVGPCAALIKKLCASGRTADARRVLAASGP-DVMVYNAMVAGYCGAGQLDAARRLVA 158

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL-NRVKKIVDPDGDSFAILLEGWEKE 230
            M    VE D    N+L+  +C +  +TS AL  L +  ++   PD  ++ ILLE   K 
Sbjct: 159 DMP---VEPDAYTYNTLIRGLCGR-GRTSNALAVLEDMFRRGCLPDVVTYTILLEATCKR 214

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
              ++A K   EM ++    P+ ++ Y   L  + +  +V++A++FL+ +    C P   
Sbjct: 215 SGYKQAMKLLDEMHDK-GCAPD-IVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTV 272

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
            ++  L  L        A +L + M   G    PN++ +N +I  LC    V+      +
Sbjct: 273 SYNIVLKGLFTAERWEDAEKLMEEMAHKGCP--PNVVTFNMLISFLCRRGLVEPAMEVLE 330

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
           QM  +G  P+SL+YN +     K K++H+  +F   M+     P  ++  T +T L    
Sbjct: 331 QMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNG 390

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 470
           E ++AIE+ + + + G  P+  S N ++ GL   G+  +     +EM ++ +    +T  
Sbjct: 391 EVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYS 450

Query: 471 KLKKAFYNESRSMRDIFDSLERRCKTSQM 499
            +      E R    I +++   CK   M
Sbjct: 451 TIASGLCREDR----IEEAVRTFCKVQDM 475


>gi|297839365|ref|XP_002887564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297333405|gb|EFH63823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 451

 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 101/407 (24%), Positives = 184/407 (45%), Gaps = 17/407 (4%)

Query: 62  HASSDDIESALACTGIIP-TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPY---AWN 117
           H + DD    +  T   P TP+LV+ VL+  ++    A+ FF +     R   +   +++
Sbjct: 36  HQTLDD--QFILSTKTTPWTPNLVNSVLKRLWNHGPKALQFFHFLDNHHREYVHDASSFD 93

Query: 118 LMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMSMH 176
           L +D+  +      +W+ +  M+   +   P TFA + + Y  +GK D+AV  F  M  H
Sbjct: 94  LAIDIAARLHIHPTVWSLIHRMRSLRIGPSPKTFAIVAERYASSGKPDKAVKLFLNMHEH 153

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA 236
           G  QD+ + N++L  +C+ + +  +A E    ++     D  ++ +++ GW       +A
Sbjct: 154 GCFQDLASFNTILDVLCKSK-RVEKAYELFRALRGRFSADTVTYNVIVNGWCLIKRTPKA 212

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
            +   EMV+R   NP ++  Y T L    R  Q+ +A +F   MK  NC   +  ++  +
Sbjct: 213 LEVLKEMVDR-GINP-NLTTYNTMLQGFFRAGQIRQAWEFFLEMKKRNCEIDVVTYTTVV 270

Query: 297 DILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG 356
                  +      ++D M+  G  ++P++  YNA I +LC  D V+N    F++MV  G
Sbjct: 271 HGFGVAGEIKRTRNVFDEMIREG--VLPSVATYNAFIQVLCKKDSVENAVVMFEEMVRKG 328

Query: 357 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 416
             P+  TYN++   L    +    E+    M     +P        I    +  E E A+
Sbjct: 329 YEPNVTTYNVLIRGLFHAGKFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKAL 388

Query: 417 EIWNYILENGILPLEASANELLVGLRNLGRLSDV-----RRFAEEML 458
            ++  +     LP   + N L+ G+    R  D+     + FA+E+L
Sbjct: 389 GLFEKMGTGDCLPNLDTYNILISGMFVRKRSEDMVVAGNQAFAKEIL 435



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 114/261 (43%), Gaps = 18/261 (6%)

Query: 205 FLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT 263
            ++R++ + + P   +FAI+ E +   G  ++A K F  M E   +  + + ++ T L  
Sbjct: 111 LIHRMRSLRIGPSPKTFAIVAERYASSGKPDKAVKLFLNMHEHGCF--QDLASFNTILDV 168

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK----LNDSTHAVQLWDIMVGIG 319
           L + K+V++A +  R ++G     T+ +     +++V     +  +  A+++   MV  G
Sbjct: 169 LCKSKRVEKAYELFRALRGRFSADTVTY-----NVIVNGWCLIKRTPKALEVLKEMVDRG 223

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
            N  PNL  YN ++        +   + FF +M       D +TY  +         +  
Sbjct: 224 IN--PNLTTYNTMLQGFFRAGQIRQAWEFFLEMKKRNCEIDVVTYTTVVHGFGVAGEIKR 281

Query: 380 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 439
               F EMI+    P+       I +L   D  E A+ ++  ++  G  P   + N L+ 
Sbjct: 282 TRNVFDEMIREGVLPSVATYNAFIQVLCKKDSVENAVVMFEEMVRKGYEPNVTTYNVLIR 341

Query: 440 GLRNLGRLSDVRRFAEEMLNR 460
           GL + G+ S      EE++ R
Sbjct: 342 GLFHAGKFSR----GEELMQR 358


>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
 gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
          Length = 1116

 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 168/378 (44%), Gaps = 18/378 (4%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           ++++VD   K  R ++    +  M   G   ++ TF SI D  C + +  EA   FD M+
Sbjct: 433 YSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMA 492

Query: 175 M-HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
           + HG+  D +   +L+  + R    T RA +    +  + DPD  +F   + G  K G+V
Sbjct: 493 LKHGLVPDKITYCTLIDGLFR----TGRAGQAEALLDAMPDPDTYAFNCCINGLSKLGDV 548

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
             A + +  M+E  E  P+ V  +   +    +    ++A      M  +N  P +  F 
Sbjct: 549 SRALQVYNRMLE-LELVPDKV-TFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFG 606

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +D L K      A  + D+M  +G  + PN++ YNA++  LC +  ++   +F ++MV
Sbjct: 607 ALIDGLCKAGQVEAARDILDLMGNLG--VPPNVVTYNALVHGLCKSGRIEEACQFLEEMV 664

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G  PDS+TY  +   L +  R  +  +   E+    W P  +     +  L  + + E
Sbjct: 665 SSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTE 724

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR-------RILIYE 466
            AI +   ++  G  P   + N L+  L   G L + RR   +M +R        ++ Y 
Sbjct: 725 QAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYS 784

Query: 467 VTMHKLKK-AFYNESRSM 483
           V ++ L K    +E+R +
Sbjct: 785 VLINGLCKVGRIDEAREL 802



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 103/446 (23%), Positives = 176/446 (39%), Gaps = 72/446 (16%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE-DGVLSLPTFASIFDSYCGAGKYDE 165
           RG       +N ++D L K G  E+       M     V ++ T++ + +  C  G+ DE
Sbjct: 245 RGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRIDE 304

Query: 166 AVMSFDVMSMHGVE--QDVVAVNSLLSAICRQENQTSRALEFLNRVKKI---VDPDGDSF 220
           A      M+    +   +++  NS L  +C+Q + T+ A E +  ++     V PD  +F
Sbjct: 305 ARELIQEMTRKSCDVLPNIITYNSFLDGLCKQ-SMTAEACELMRSLRDGSLRVSPDTVTF 363

Query: 221 AILLEGWEKEGNVEEANKTFGEMV------------------------ERFEWNPEH--- 253
           + L++G  K G ++EA   F +M+                        ER     E    
Sbjct: 364 STLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVD 423

Query: 254 ------VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 307
                 V+ Y   +    +  +VDEAL+ L  M    C P +  F++ +D L K + S  
Sbjct: 424 KGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGE 483

Query: 308 AVQLWDIMVGIGFNLMPNLIMY-------------------------------NAVIGLL 336
           A Q++D M  +   L+P+ I Y                               N  I  L
Sbjct: 484 AFQMFDDMA-LKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMPDPDTYAFNCCINGL 542

Query: 337 CNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 396
               DV    + +++M+     PD +T+N++     K     +    F EM+    QP  
Sbjct: 543 SKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDV 602

Query: 397 LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 456
           +     I  L  A + E A +I + +   G+ P   + N L+ GL   GR+ +  +F EE
Sbjct: 603 MTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEE 662

Query: 457 MLNRRILIYEVTMHKLKKAFYNESRS 482
           M++   +   +T   L  A    SR+
Sbjct: 663 MVSSGCVPDSITYGSLVYALCRASRT 688



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 156/332 (46%), Gaps = 8/332 (2%)

Query: 149  TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN-QTSRAL--EF 205
            T+  + D    +G+ ++A+   + M   G   DVV  N+L+ ++C+  + + +R L  + 
Sbjct: 709  TYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDM 768

Query: 206  LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
             +RV +   P+  ++++L+ G  K G ++EA +   EM+ +      +++ Y +FL  L 
Sbjct: 769  SSRVSRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLC 828

Query: 266  RGKQVDEALKFLRVMKGEN--CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLM 323
            +   + EA + +R ++  +    P    FS  +D L K   +  A  ++D M+  G+  +
Sbjct: 829  KQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGY--V 886

Query: 324  PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
            PN++ YN ++  LC  D ++      + MV  G  PD +TY+++ +   K   V E  + 
Sbjct: 887  PNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALEL 946

Query: 384  FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW-NYILENGILPLEASANELLVGLR 442
             H M      P  +   + I  L  +D+   A +++ +  L++G+ P + +   L+ GL 
Sbjct: 947  LHGMASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLF 1006

Query: 443  NLGRLSDVRRFAEEMLNRRILIYEVTMHKLKK 474
              G         + M +     +   ++ L K
Sbjct: 1007 RTGWAGQAEVLLDAMPDPDTYAFNCCINGLSK 1038



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 147/331 (44%), Gaps = 6/331 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N +V  L K+GR E+    +  M   G +    T+ S+  + C A + D+A+     + 
Sbjct: 640 YNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELK 699

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNV 233
             G + D V  N L+  +  +  QT +A+  L   V K   PD  ++  L++   K G++
Sbjct: 700 SFGWDPDTVTYNILVDGL-WKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDL 758

Query: 234 EEANKTFGEMVERFE-WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC--FPTLK 290
           EEA +  G+M  R       +V+ Y   +  L +  ++DEA + ++ M  ++C   P + 
Sbjct: 759 EEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNII 818

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
            +++ LD L K +    A +L   +      + P+ + ++ +I  LC     D     FD
Sbjct: 819 TYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFD 878

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
            M+  G  P+ +TYN++   L K  ++         M+     P  +  +  +     A 
Sbjct: 879 DMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKAS 938

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGL 441
             + A+E+ + +   G  P   + N ++ GL
Sbjct: 939 HVDEALELLHGMASRGCTPNVVTFNSIIDGL 969



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/406 (21%), Positives = 175/406 (43%), Gaps = 19/406 (4%)

Query: 88  LQLSYDSPSSAVDFFRWAGRGQRLSP------YAWNLMVDVLGKNGRFEQMWNAVRVMKE 141
           L +   SP+ A+D FR      RL P      + ++ ++    K G   +          
Sbjct: 120 LLVKSGSPAKAIDLFR-----SRLPPRCRPNHFTYSTLLRATYKAGGDVERTLGFFRRIR 174

Query: 142 DGVLSLPTFASIFDSYCGAGKYDEAVMSF-DVMSMHGVEQDVVAVNSLLSAICRQENQTS 200
               S+  +  +  S C AG+   A+  F   M+  GV   +V  N++++ +C+  N+  
Sbjct: 175 SSSRSVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKS-NELG 233

Query: 201 RALE-FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYET 259
             +E F   V++   PD  ++  L++   K G++EEA +  G+M  R    P +V+ Y  
Sbjct: 234 AGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSR-SCVP-NVVTYSV 291

Query: 260 FLITLIRGKQVDEALKFLRVMKGENC--FPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317
            +  L +  ++DEA + ++ M  ++C   P +  +++ LD L K + +  A +L   +  
Sbjct: 292 LINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRD 351

Query: 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
               + P+ + ++ +I  LC    +D     FD M+  G  P+ +TYN +   L K  ++
Sbjct: 352 GSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKM 411

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 437
                    M+     P  +  +  +     A   + A+E+ + +   G  P   + N +
Sbjct: 412 ERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSI 471

Query: 438 LVGLRNLGRLSDVRRFAEEMLNRRILIYE-VTMHKLKKAFYNESRS 482
           + GL    R  +  +  ++M  +  L+ + +T   L    +   R+
Sbjct: 472 IDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRA 517



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 87/384 (22%), Positives = 146/384 (38%), Gaps = 74/384 (19%)

Query: 106  GRGQRLSPYAWNLMVDVLGKNGRFEQMWN-----AVRVMKEDGVLSLPTFASIFDSYCGA 160
            G+G       +N ++D L K G  E+        + RV +   V ++ T++ + +  C  
Sbjct: 735  GKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRC-CVPNVVTYSVLINGLCKV 793

Query: 161  GKYDEAVMSFDVMSMHGVE--QDVVAVNSLLSAICRQENQTSRALEFLNRVKKI---VDP 215
            G+ DEA      M     +   +++  NS L  +C+Q +  + A E +  ++     V P
Sbjct: 794  GRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQ-SMMAEACELMRSLRDGSLRVSP 852

Query: 216  DGDSFAILLEGWEKEGNVEEANKTFGEMV------------------------ERFEWNP 251
            D  +F+ L++G  K G  +EA   F +M+                        ER     
Sbjct: 853  DTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMI 912

Query: 252  EH---------VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
            E          V+ Y   +    +   VDEAL+ L  M    C P +  F++ +D L K 
Sbjct: 913  ESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKS 972

Query: 303  NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI-GLL------------------------- 336
            + S  A Q++D M  +   L P+ I Y  +I GL                          
Sbjct: 973  DQSGEAFQMFDDMT-LKHGLAPDKITYCTLIDGLFRTGWAGQAEVLLDAMPDPDTYAFNC 1031

Query: 337  CNN--DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
            C N    + +V R   +M+     PD +T+N++     K     +    F EM+    QP
Sbjct: 1032 CINGLSKLGDVSRALHRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQP 1091

Query: 395  TPLNCATAITMLLDADEPEIAIEI 418
              +     I  L  A + E   +I
Sbjct: 1092 DVMTFGALIDGLCKAGQVEATWDI 1115



 Score = 42.7 bits (99), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 88/203 (43%), Gaps = 11/203 (5%)

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI-GLLCNNDDVDNVF 346
           T+  F+  L++LVK      A+ L+     +     PN   Y+ ++        DV+   
Sbjct: 110 TIFSFNKYLNLLVKSGSPAKAIDLFRSR--LPPRCRPNHFTYSTLLRATYKAGGDVERTL 167

Query: 347 RFFDQMVFHGAFPDSLTYNMIFECLIK-NKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
            FF ++           YN++ + L +  +    +E F  EM ++   PT +   T I  
Sbjct: 168 GFFRRIRSSSRS--VADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIING 225

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR----R 461
           L  ++E    +E++  ++E G  P   + N L+  L   G L + RR   +M +R     
Sbjct: 226 LCKSNELGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPN 285

Query: 462 ILIYEVTMHKLKK-AFYNESRSM 483
           ++ Y V ++ L K    +E+R +
Sbjct: 286 VVTYSVLINGLCKVGRIDEAREL 308


>gi|222639781|gb|EEE67913.1| hypothetical protein OsJ_25766 [Oryza sativa Japonica Group]
          Length = 625

 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 96/375 (25%), Positives = 166/375 (44%), Gaps = 11/375 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG       ++ ++  L K    ++       M ++GV+     + S+   YC +GK  E
Sbjct: 237 RGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKE 296

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A+  F  M  HGVE DVV   +L+  +C+    T     F + VK+   PD  ++  LL 
Sbjct: 297 AIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLH 356

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+  EG + E +     M+++      H+  +   +    +  +VDEAL     M+ +  
Sbjct: 357 GYATEGALVEMHDLLDLMMKKGMQLGHHI--FNMIMGAYAKHNKVDEALLVFSNMRQQGL 414

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P +  +   LDIL        A+  ++ +   G  L PN++++  +I  LC  D  D V
Sbjct: 415 NPDIVNYGTVLDILCTAGRVDDALSQFNSLKSEG--LAPNIVVFTTLIHGLCTCDKWDKV 472

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI-T 404
                +M+  G   D++ +N I   L K  RV E +  F  M++   +P      T I  
Sbjct: 473 EELAFEMIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDG 532

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNR 460
             LD    E A+++   ++ NG+ P + + N ++ G    GR+ D      EM    +N 
Sbjct: 533 YCLDGKMDE-AMKLLGVMVFNGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMDGKGVNP 591

Query: 461 RILIYEVTMHKLKKA 475
            I+ YE+ +  L +A
Sbjct: 592 GIVTYEMLLQGLFQA 606



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 74/338 (21%), Positives = 135/338 (39%), Gaps = 14/338 (4%)

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI----VDPDGDSF 220
           +A   FD +   G    +  +N  LS + R       A+   NR+ +       P+  ++
Sbjct: 45  DAHQVFDRLLKRGDRASIFDLNRALSDVARASPAV--AISLFNRMPRAGATSAAPNIATY 102

Query: 221 AILLEGWEKEGNVEEANKTFGEMVE---RFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            I++    + G ++ A  T G ++    R E NP    +         R  ++D     L
Sbjct: 103 GIVIGCCRRLGRLDLAFATVGRVITTGLRHEPNPLQSSSQGPLCTAGGRAMRMD---IVL 159

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337
           R M    C P L  ++  L  L     S  A+ L  IM         +++ Y  VI  L 
Sbjct: 160 RRMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGRCPLDVVAYTTVINGLL 219

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
               +D  +  FD M+  G  PD +TY+ I   L K + + +  + F  M+KN   P  +
Sbjct: 220 REGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPDCI 279

Query: 398 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
              + +     + +P+ AI I+  +  +G+ P   +   L+  L   G+ ++ R+  + +
Sbjct: 280 MYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSL 339

Query: 458 LNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLERR 493
           + R       T   L   +  E     M D+ D + ++
Sbjct: 340 VKRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKK 377



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 101/448 (22%), Positives = 176/448 (39%), Gaps = 47/448 (10%)

Query: 38  PRFPTHLDAPYISSSARII--CEILAHASSDDIESALACTGIIPTPDLVHEV--LQLSYD 93
           PR      AP I++   +I  C  L       ++ A A  G + T  L HE   LQ S  
Sbjct: 88  PRAGATSAAPNIATYGIVIGCCRRLGR-----LDLAFATVGRVITTGLRHEPNPLQSSSQ 142

Query: 94  SPSSAVDFFRWAGRGQRL------------SP--YAWNLMVDVLGKNGRFEQMWNAVRVM 139
            P          GR  R+             P  +++ +++  L  +   +Q  + + +M
Sbjct: 143 GP-----LCTAGGRAMRMDIVLRRMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIM 197

Query: 140 ---KEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
              K    L +  + ++ +     G+ D+A   FD M   G   DVV  +S++SA+ + +
Sbjct: 198 ADHKGRCPLDVVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQ 257

Query: 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
                   F   VK  V PD   +  L+ G+   G  +EA   F +M  R    P+ V+ 
Sbjct: 258 AMDKATQVFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMC-RHGVEPD-VVT 315

Query: 257 YETFLITLIRGKQVDEALKFLR--VMKGE----NCFPTLKFFSNALDILVKLNDSTHAVQ 310
           Y   +  L +  +  EA K     V +G       + TL         LV+++D      
Sbjct: 316 YTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEMHD------ 369

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
           L D+M+  G  L  ++  +N ++G    ++ VD     F  M   G  PD + Y  + + 
Sbjct: 370 LLDLMMKKGMQLGHHI--FNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDI 427

Query: 371 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 430
           L    RV +    F+ +      P  +   T I  L   D+ +   E+   +++ GI   
Sbjct: 428 LCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMIDRGICLD 487

Query: 431 EASANELLVGLRNLGRLSDVRRFAEEML 458
               N ++  L   GR+ + +   + M+
Sbjct: 488 TIFFNAIMGNLCKKGRVIEAKNLFDLMV 515


>gi|356560497|ref|XP_003548528.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial-like [Glycine max]
          Length = 490

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 100/408 (24%), Positives = 185/408 (45%), Gaps = 48/408 (11%)

Query: 73  ACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFE 130
           AC  I  + DLVH +L    D   SA+  FRWA      R S  ++++MVD+LG+    E
Sbjct: 67  ACDFIPLSRDLVHRLLWRYKDDWKSALGVFRWASSRPSFRHSSESYDMMVDILGRMKVME 126

Query: 131 QMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS 190
           ++ + +  M+E G++++ T A     + GAG++ +AV  FD +   G+E++  ++N LL 
Sbjct: 127 KLRDLLEEMREGGLVNMNTVAKAMRRFVGAGQWVDAVRIFDDLQALGLEKNTESMNLLLD 186

Query: 191 AICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
            +C+ E    +A E    +K+ + P+  +F I + GW K   V+EA+ T  EM + + ++
Sbjct: 187 TLCK-EKFVQQAREIFLELKQHIAPNAHTFNIFIHGWCKICRVDEAHWTIQEM-KGYGFH 244

Query: 251 P----------------------------------EHVLAYETFLITLIRGKQVDEALKF 276
           P                                   +V+ Y + +  L + K+ +EALK 
Sbjct: 245 PCVISYSTLIQCYCQEGNFSRVYELLDEMQAQGCSANVITYTSIMCALGKAKKFEEALKV 304

Query: 277 LRVMKGENCFPTLKFFSNALDIL---VKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
              M+   C P   FF++ +  L    +L+D+    ++     G+     PN   YN++I
Sbjct: 305 PERMRSSGCRPDTLFFNSLIHTLGRAGRLDDAADVFKVEMPKAGVS----PNTSTYNSMI 360

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAF-PDSLTYNMIFECLIKNKRVHEV-EKFFHEMIKNE 391
            + C +           +M   G   PD+ TY+ + +   ++ ++  V  +  ++MI  +
Sbjct: 361 SMFCYHAQEKRALEILKEMENSGGCKPDAQTYHPLIKSCFRSGKIDGVLSEILNDMINKQ 420

Query: 392 WQPTPLNCAT-AITMLLDADEPEIAIEIWNYILENGILPLEASANELL 438
                L+  T  I  L   D    A  ++  +++  I+P   +   LL
Sbjct: 421 HLSLDLSTYTLLIHGLCREDRCNWAFSLFEEMIDQDIIPRYRTCRLLL 468


>gi|42408237|dbj|BAD09394.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|215678545|dbj|BAG92200.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 624

 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 96/375 (25%), Positives = 166/375 (44%), Gaps = 11/375 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG       ++ ++  L K    ++       M ++GV+     + S+   YC +GK  E
Sbjct: 236 RGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKE 295

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A+  F  M  HGVE DVV   +L+  +C+    T     F + VK+   PD  ++  LL 
Sbjct: 296 AIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLH 355

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+  EG + E +     M+++      H+  +   +    +  +VDEAL     M+ +  
Sbjct: 356 GYATEGALVEMHDLLDLMMKKGMQLGHHI--FNMIMGAYAKHNKVDEALLVFSNMRQQGL 413

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P +  +   LDIL        A+  ++ +   G  L PN++++  +I  LC  D  D V
Sbjct: 414 NPDIVNYGTVLDILCTAGRVDDALSQFNSLKSEG--LAPNIVVFTTLIHGLCTCDKWDKV 471

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI-T 404
                +M+  G   D++ +N I   L K  RV E +  F  M++   +P      T I  
Sbjct: 472 EELAFEMIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDG 531

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNR 460
             LD    E A+++   ++ NG+ P + + N ++ G    GR+ D      EM    +N 
Sbjct: 532 YCLDGKMDE-AMKLLGVMVFNGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMDGKGVNP 590

Query: 461 RILIYEVTMHKLKKA 475
            I+ YE+ +  L +A
Sbjct: 591 GIVTYEMLLQGLFQA 605



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/337 (21%), Positives = 137/337 (40%), Gaps = 13/337 (3%)

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI----VDPDGDSF 220
           +A   FD +   G    +  +N  LS + R       A+   NR+ +       P+  ++
Sbjct: 45  DAHQVFDRLLKRGDRASIFDLNRALSDVARASPAV--AISLFNRMPRAGATSAAPNIATY 102

Query: 221 AILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKF-LR 278
            I++    + G ++ A  T G ++      +P   + +   L  L   ++  +A+   LR
Sbjct: 103 GIVIGCCRRLGRLDLAFATVGRVITTGLRMSP---ILFSPLLKGLCDRRRTSDAMDIVLR 159

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            M    C P L  ++  L  L     S  A+ L  IM         +++ Y  VI  L  
Sbjct: 160 RMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGRCPLDVVAYTTVINGLLR 219

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
              +D  +  FD M+  G  PD +TY+ I   L K + + +  + F  M+KN   P  + 
Sbjct: 220 EGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPDCIM 279

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
             + +     + +P+ AI I+  +  +G+ P   +   L+  L   G+ ++ R+  + ++
Sbjct: 280 YTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLV 339

Query: 459 NRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLERR 493
            R       T   L   +  E     M D+ D + ++
Sbjct: 340 KRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKK 376



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 89/397 (22%), Positives = 163/397 (41%), Gaps = 23/397 (5%)

Query: 75  TGIIPTPDLVHEVLQLSYDS--PSSAVDFF--RWAGRGQRLSPYAWNLMVDVLGKNGRFE 130
           TG+  +P L   +L+   D    S A+D    R    G +   +++ +++  L  +   +
Sbjct: 128 TGLRMSPILFSPLLKGLCDRRRTSDAMDIVLRRMPELGCKPDLFSYTILLKGLCDDKTSQ 187

Query: 131 QMWNAVRVM---KEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS 187
           Q  + + +M   K    L +  + ++ +     G+ D+A   FD M   G   DVV  +S
Sbjct: 188 QALDLLHIMADHKGRCPLDVVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSS 247

Query: 188 LLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF 247
           ++SA+ + +        F   VK  V PD   +  L+ G+   G  +EA   F +M  R 
Sbjct: 248 IISALSKTQAMDKATQVFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMC-RH 306

Query: 248 EWNPEHVLAYETFLITLIRGKQVDEALKFLR--VMKGE----NCFPTLKFFSNALDILVK 301
              P+ V+ Y   +  L +  +  EA K     V +G       + TL         LV+
Sbjct: 307 GVEPD-VVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVE 365

Query: 302 LNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS 361
           ++D      L D+M+  G  L  ++  +N ++G    ++ VD     F  M   G  PD 
Sbjct: 366 MHD------LLDLMMKKGMQLGHHI--FNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDI 417

Query: 362 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 421
           + Y  + + L    RV +    F+ +      P  +   T I  L   D+ +   E+   
Sbjct: 418 VNYGTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFE 477

Query: 422 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
           +++ GI       N ++  L   GR+ + +   + M+
Sbjct: 478 MIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMV 514


>gi|356560073|ref|XP_003548320.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
           mitochondrial-like [Glycine max]
          Length = 466

 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 110/414 (26%), Positives = 186/414 (44%), Gaps = 22/414 (5%)

Query: 63  ASSDDIESALACTGIIPTPDLVHEVL-QLSYDSPSSAVDFFRWAGRGQRLS--PYAWNLM 119
           A  +++E AL   GI  +  LV  VL +L YD    A+ FF WAG  +  S  P A+N M
Sbjct: 5   AEFNNMEKALGQLGIPLSTPLVTGVLHRLRYDE-KIALRFFTWAGHQEDYSHEPCAYNDM 63

Query: 120 VDVLG----KNGRFEQMWNAVRVMKEDGVLSLPT--FASIFDSYCGAGKYDEAVMSFDVM 173
           +D+L     K  +F  + + +  MK +   ++P      I   Y    KY   V  F   
Sbjct: 64  MDILSSTRYKVKQFRIVCDVLEYMKRNNKTTVPVEVLLVILRKY--TEKYLTHVQKFARK 121

Query: 174 SMHGV--EQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
               V  + ++ A N LL A+C+       A     +++K V P+ +++ I + GW +  
Sbjct: 122 RRIRVKTQPEINAFNLLLDALCKC-CLVEDAETLYKKMRKTVKPNAETYNIFVFGWCRVR 180

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL---KFLRVMKGENCFPT 288
           N     K   EMVE     P++  AY T + T  +   V EA+   +F+R        PT
Sbjct: 181 NPTRGMKLLEEMVE-LGHRPDN-FAYNTAIDTYCKAGMVTEAVDLFEFMRTKGSSISSPT 238

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
            K ++  +  L + +      +L   M+  G   +P++  Y  +I  +C    +D  ++F
Sbjct: 239 AKTYAIIIVALAQHDRMEECFKLIGHMISSG--CLPDVTTYKEIIEGMCVCGKIDEAYKF 296

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
            ++M      PD +TYN   + L  NK+  +  K +  MI+    P+       I+M  +
Sbjct: 297 LEEMGNKSYRPDIVTYNCFLKVLCDNKKSEDALKLYGRMIELNCIPSVQTYNMLISMFFE 356

Query: 409 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
            D+P+ A E W  +   G  P   + + ++ GL N  ++ D     EE++N+ I
Sbjct: 357 IDDPDGAFETWQEMDNRGCRPDIDTYSVMIDGLFNCNKVEDACFLLEEVINKGI 410


>gi|255552099|ref|XP_002517094.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543729|gb|EEF45257.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 549

 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 106/436 (24%), Positives = 201/436 (46%), Gaps = 16/436 (3%)

Query: 56  ICEILA--HASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRL 111
           + EIL   +  +D +  AL   G+ PT +L+ ++L    +    A+  F WA    G   
Sbjct: 104 VSEILKKHYPCTDSVVQALNDCGVNPTNNLISQLLNRFCNDWVPALGLFTWAKHQTGYVH 163

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKE-DGVLSLPTFASIFDSYCGAGKYDEAVMSF 170
            P  ++LMVD+LG+  +F  MW  V+ M+  +G +SL T   +      AG + +AV +F
Sbjct: 164 PPDLYDLMVDILGRRKKFSFMWELVKEMENLEGYVSLVTMKKVMRRLARAGNFQDAVEAF 223

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
             +   GV +D+ A+N L+ A+ + E     A       K  +  D  SF ILL G+ K 
Sbjct: 224 RGIEKLGVRKDIEALNVLMDALVK-EGSVEHAYSAFMEFKDSIHVDFQSFNILLHGYCKA 282

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
             +++A K   EM ++  + P +V++Y  F+    + K           M+ ++C P + 
Sbjct: 283 RKLDDARKIMDEM-DKQGFQP-NVVSYTCFIELYCKLKDFRNVEAIFSEMQEKSCKPNVI 340

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
            ++  +  L K      A++++++M       +P+   Y+++I +L  +  + + +  F+
Sbjct: 341 TYTIFMHALGKAKQVNKALEVYEMMKSNC--CVPDASFYSSLIFVLTQSGRLKDAWDVFE 398

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
            M   G  PD LTYN +      +       K    M ++  +P     A  + M     
Sbjct: 399 DMKKQGVSPDLLTYNTMITSACTHLEEENALKLLRRMEEDSCKPDIQTYAPLLKMCCRKK 458

Query: 411 EPEIAIEIWNYILENGILPLEASANELLV-GLRNLGRLSDVRRFAEEMLNRRIL----IY 465
             ++   + N++ +N I  ++     LLV GL   G+L     F EEM+ + ++     Y
Sbjct: 459 RIKVLKFLLNHMFKNNI-SIDLGTYVLLVGGLCKSGKLELACSFFEEMVMKGLIPRDRTY 517

Query: 466 EVTMHKLKKAFYNESR 481
           ++ + +L++    E++
Sbjct: 518 KMLVEELEQNNLTEAK 533



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 142/334 (42%), Gaps = 44/334 (13%)

Query: 98  AVDFFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDS 156
           AV+ FR   + G R    A N+++D L K G  E  ++A    K+   +   +F  +   
Sbjct: 219 AVEAFRGIEKLGVRKDIEALNVLMDALVKEGSVEHAYSAFMEFKDSIHVDFQSFNILLHG 278

Query: 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR---------------------- 194
           YC A K D+A    D M   G + +VV+    +   C+                      
Sbjct: 279 YCKARKLDDARKIMDEMDKQGFQPNVVSYTCFIELYCKLKDFRNVEAIFSEMQEKSCKPN 338

Query: 195 ------------QENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVEEANKTFG 241
                       +  Q ++ALE    +K     PD   ++ L+    + G +++A   F 
Sbjct: 339 VITYTIFMHALGKAKQVNKALEVYEMMKSNCCVPDASFYSSLIFVLTQSGRLKDAWDVFE 398

Query: 242 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
           +M ++   +P+ +L Y T + +     + + ALK LR M+ ++C P ++ ++     L+K
Sbjct: 399 DM-KKQGVSPD-LLTYNTMITSACTHLEEENALKLLRRMEEDSCKPDIQTYAP----LLK 452

Query: 302 LNDSTHAVQLWDIMVGIGF--NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFP 359
           +      +++   ++   F  N+  +L  Y  ++G LC +  ++    FF++MV  G  P
Sbjct: 453 MCCRKKRIKVLKFLLNHMFKNNISIDLGTYVLLVGGLCKSGKLELACSFFEEMVMKGLIP 512

Query: 360 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
              TY M+ E L +N      EK    M + E Q
Sbjct: 513 RDRTYKMLVEELEQNNLTEAKEKIQKLMFQTEDQ 546


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 166/357 (46%), Gaps = 6/357 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG   +   +N++VD L K        + V+ M E G   ++ TF S+ D +C  G  D+
Sbjct: 208 RGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDD 267

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILL 224
           A     +M   G+  +VV  ++L+  +C+ + +   A E L  +K + V PD  +++ L+
Sbjct: 268 ARKLLGIMVAKGMRPNVVTYSALIDGLCKSQ-KFLEAKEVLEEMKTRGVTPDAFTYSALI 326

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G  K   +EEA +    M       P+ V+ Y + +    +  ++ EA K L+ M+ + 
Sbjct: 327 HGLCKADKIEEAEQMLRRMAGS-GCTPD-VVVYSSIIHAFCKSGKLLEAQKTLQEMRKQR 384

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
             P +  ++  +D L KL     A  + + M   G +++P+++ Y+ VI  LC +D +  
Sbjct: 385 KSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESG-DVLPDVVTYSTVINGLCKSDMLVE 443

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
             +  D+M   G  PD +TY  I + L K  R+ E E     M +    P  +   T I+
Sbjct: 444 AQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLIS 503

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461
            L  A + + A  +   +   G  P   + N ++ GL   GR+ + ++  + M + R
Sbjct: 504 GLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGR 560



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 129/286 (45%), Gaps = 10/286 (3%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG     + ++ ++  L K  + E+    +R M   G    +  ++SI  ++C +GK  E
Sbjct: 313 RGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLE 372

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD--PDGDSFAIL 223
           A  +   M       DVV  N+++  +C+   + + A   L ++++  D  PD  +++ +
Sbjct: 373 AQKTLQEMRKQRKSPDVVTYNTVIDGLCKL-GKIAEAQVILEQMQESGDVLPDVVTYSTV 431

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           + G  K   + EA K    M  +   NP+ V+ Y T +  L +  +++EA   L+ MK  
Sbjct: 432 INGLCKSDMLVEAQKLLDRMC-KAGCNPD-VVTYTTIIDGLCKCGRLEEAEYLLQGMKRA 489

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
            C P +  ++  +  L K      A ++ + M   G    PNL+ YN ++  LC +  + 
Sbjct: 490 GCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCP--PNLVTYNTMVNGLCVSGRIK 547

Query: 344 NVFRFFDQMVFHGA--FPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
              +   +M    A   PD+ TY  I   L+ +  V E E+   +M
Sbjct: 548 EAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQM 593



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 116/253 (45%), Gaps = 6/253 (2%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSYCGAG 161
           R AG G       ++ ++    K+G+  +    ++ M K+     + T+ ++ D  C  G
Sbjct: 344 RMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLG 403

Query: 162 KYDEAVMSFDVMSMHG-VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDS 219
           K  EA +  + M   G V  DVV  +++++ +C+  +    A + L+R+ K   +PD  +
Sbjct: 404 KIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKS-DMLVEAQKLLDRMCKAGCNPDVVT 462

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           +  +++G  K G +EEA      M +R    P +V+ Y T +  L + ++VDEA + +  
Sbjct: 463 YTTIIDGLCKCGRLEEAEYLLQGM-KRAGCAP-NVVTYTTLISGLCKARKVDEAERVMEE 520

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
           M+   C P L  ++  ++ L        A QL   M        P+   Y  ++  L ++
Sbjct: 521 MRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSS 580

Query: 340 DDVDNVFRFFDQM 352
           D V    +  +QM
Sbjct: 581 DLVQEAEQLLEQM 593



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 62/306 (20%), Positives = 124/306 (40%), Gaps = 11/306 (3%)

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
           S+ G      + NSLL  + R +        F + +    +PD  S+ I++ G+   G++
Sbjct: 69  SIPGFSHTAFSWNSLLQVLVRCKKHREAGDLFRSELLASCEPDVCSYNIVISGFCNAGDL 128

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
             A +   EM +   + P+    +   +  +     +D A+  LR M    C P +  ++
Sbjct: 129 HAALELLEEM-KSAGFAPD-AFTHTPIITAMANAGDLDGAMDHLRSM---GCDPNVVTYT 183

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +    +      A++L + M   G    PNL+ YN ++  LC    V        +M+
Sbjct: 184 ALIAAFARAKKLEEAMKLLEEMRERGCP--PNLVTYNVLVDALCKLSMVGAAQDVVKKMI 241

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G  P+ +T+N + +   K   V +  K    M+    +P  +  +  I  L  + +  
Sbjct: 242 EGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFL 301

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSD----VRRFAEEMLNRRILIYEVTM 469
            A E+   +   G+ P   + + L+ GL    ++ +    +RR A       +++Y   +
Sbjct: 302 EAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSII 361

Query: 470 HKLKKA 475
           H   K+
Sbjct: 362 HAFCKS 367


>gi|242064594|ref|XP_002453586.1| hypothetical protein SORBIDRAFT_04g008535 [Sorghum bicolor]
 gi|241933417|gb|EES06562.1| hypothetical protein SORBIDRAFT_04g008535 [Sorghum bicolor]
          Length = 277

 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 111/223 (49%), Gaps = 15/223 (6%)

Query: 84  VHEVLQLSYDSPSSAVDFFRWAGRGQ----RLSPYAWNLMVDVLGKNGRFEQMWNAVRVM 139
           V +VL+LSY  P +A  FF  AG         SPY+WNL++D+LG N  F +MW  V  M
Sbjct: 25  VEQVLRLSYAHPCAAAAFFHLAGHWHLGHDNHSPYSWNLVIDILGTNRIFTRMWETVDSM 84

Query: 140 KEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN-Q 198
               +LSL TFAS+F S   +          D M  + +  D   +NSLLSA+CR     
Sbjct: 85  HSRWLLSLDTFASVFSSLAASPSCSMLKAFMDDMPHYDMACDTTTLNSLLSALCRANRLD 144

Query: 199 TSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYE 258
            +RA+  + R +    PD DS+AILLE              F EMV     +P++V AY+
Sbjct: 145 DARAVILVARAEVGTLPDADSYAILLECARL-----PPTHVFDEMVRDIGGDPDNVPAYD 199

Query: 259 TFLITLIRGK---QVDEALKFLRVMKGENCFPTL--KFFSNAL 296
            FL T++       + +A  +L  +K  +C P    +FF  AL
Sbjct: 200 AFLTTIVSSNYSMALPKATYYLDFLKRHDCLPGTGQRFFHAAL 242


>gi|255540805|ref|XP_002511467.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550582|gb|EEF52069.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 482

 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 103/420 (24%), Positives = 186/420 (44%), Gaps = 11/420 (2%)

Query: 59  ILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYA--W 116
           IL   +S  +  +L    I  TP LV+ +L+  ++    A+ FF+           A  +
Sbjct: 36  ILNSTNSQTLAESLHSPSIQWTPQLVNTILKRLWNHGPKALHFFKILSHHPSYCHQASSF 95

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMSM 175
           +  +D+  +   F  +W  V  M+   +   P TFA I + Y   GK   AV  F  M  
Sbjct: 96  DHAIDICARLRDFRTLWFLVSRMRSCRLGPSPRTFAIIAERYAAMGKPHRAVTVFMSMHE 155

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEE 235
           +G  QD+ + N++L  +C+ + +   A      +K     D  S+ I++ GW       +
Sbjct: 156 YGCFQDLSSFNTILDVLCKSK-RVEMAYNLFKALKGKFKADCVSYNIIVNGWCLIKRTPK 214

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
           A +   EMVER    P ++  Y   L    R  Q +EA  F   MK   C   +  +++ 
Sbjct: 215 ALEMLKEMVER-GLTP-NLTTYNIMLNGYFRAGQTNEAWGFFLEMKKRKCDIDVVTYTSV 272

Query: 296 LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
           +  L  + +   A  +++ MV  G  ++P++  +NA+I +LC  D V+N    F++MV  
Sbjct: 273 IHGLGVVGEIKRARNVFNQMVKDG--VLPSVATFNALIQILCKKDSVENAILIFEEMVKR 330

Query: 356 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 415
           G  P+S+TYN++   L     +    +    M  ++ +P        I    DA E E  
Sbjct: 331 GYVPNSITYNLVIRGLCHVGEMQRAMELMERMEDDDCEPNVQTYNILIRYFCDAGEIEKG 390

Query: 416 IEIWNYILENGILPLEASANELLVGL---RNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
           ++++  +     LP   + N L+  +   +N   L    +   EM++R  L  ++T +++
Sbjct: 391 LDLFQKMGNGDCLPNLDTYNILINSMFVRKNSDNLLVAGKLLVEMVDRGFLPRKLTFNRV 450



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 122/263 (46%), Gaps = 10/263 (3%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++N++V+      R  +    ++ M E G+  +L T+  + + Y  AG+ +EA   F  M
Sbjct: 198 SYNIIVNGWCLIKRTPKALEMLKEMVERGLTPNLTTYNIMLNGYFRAGQTNEAWGFFLEM 257

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGN 232
                + DVV   S++  +     +  RA    N+ VK  V P   +F  L++   K+ +
Sbjct: 258 KKRKCDIDVVTYTSVIHGL-GVVGEIKRARNVFNQMVKDGVLPSVATFNALIQILCKKDS 316

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           VE A   F EMV+R  + P  +  Y   +  L    ++  A++ +  M+ ++C P ++ +
Sbjct: 317 VENAILIFEEMVKR-GYVPNSI-TYNLVIRGLCHVGEMQRAMELMERMEDDDCEPNVQTY 374

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF---RFF 349
           +  +       +    + L+  M G G + +PNL  YN +I  +    + DN+    +  
Sbjct: 375 NILIRYFCDAGEIEKGLDLFQKM-GNG-DCLPNLDTYNILINSMFVRKNSDNLLVAGKLL 432

Query: 350 DQMVFHGAFPDSLTYNMIFECLI 372
            +MV  G  P  LT+N + + L+
Sbjct: 433 VEMVDRGFLPRKLTFNRVLDGLL 455


>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
 gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
          Length = 471

 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 165/357 (46%), Gaps = 6/357 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG   +   +N++VD L K        + V+ M E G   ++ TF S+ D +C  G  D+
Sbjct: 86  RGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDD 145

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILL 224
           A     +M   G+  +VV  ++L+  +C+ + +   A E L  +K   V PD  +++ L+
Sbjct: 146 ARKLLGIMVAKGMRPNVVTYSALIDGLCKSQ-KFLEAKEVLEEMKASGVTPDAFTYSALI 204

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G  K   +EEA +    M       P+ V+ Y + +    +  ++ EA K L+ M+ + 
Sbjct: 205 HGLCKADKIEEAEQMLRRMAGSG-CTPD-VVVYSSIIHAFCKSGKLLEAQKTLQEMRKQR 262

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
             P +  ++  +D L KL     A  + D M   G +++P+++ Y+ VI  LC +D +  
Sbjct: 263 KSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESG-DVLPDVVTYSTVINGLCKSDMLVE 321

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
             +  D+M   G  PD +TY  I + L K  R+ E E     M +    P  +   T I+
Sbjct: 322 AQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLIS 381

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461
            L  A + + A  +   +   G  P   + N ++ GL   GR+ + ++  + M + R
Sbjct: 382 GLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGR 438



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/321 (23%), Positives = 128/321 (39%), Gaps = 45/321 (14%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDE 165
           +G R +   ++ ++D L K+ +F +    +  MK  GV     T++++    C A K +E
Sbjct: 156 KGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEE 215

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN--QTSRALEFLNRVKKIVDPDGDSFAIL 223
           A      M+  G   DVV  +S++ A C+     +  + L+ + + +K   PD  ++  +
Sbjct: 216 AEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRK--SPDVVTYNTV 273

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           ++G  K G + EA     +M E  +  P+ V+ Y T +  L +   + EA K L  M   
Sbjct: 274 IDGLCKLGKIAEAQVILDQMQESGDVLPD-VVTYSTVINGLCKSDMLVEAQKLLDRMCKA 332

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
            C P +  ++  +D L K      A  L   M   G    PN++ Y  +I  LC    VD
Sbjct: 333 GCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAG--CAPNVVTYTTLISGLCKARKVD 390

Query: 344 NVFRFFDQMVFHGA-------------------------------------FPDSLTYNM 366
              R  ++M   G                                       PD+ TY  
Sbjct: 391 EAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRT 450

Query: 367 IFECLIKNKRVHEVEKFFHEM 387
           I   L+ +  V E E+   +M
Sbjct: 451 IVNALMSSDLVQEAEQLLEQM 471



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 125/278 (44%), Gaps = 12/278 (4%)

Query: 202 ALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF 260
           ALE L  +K     PD  +   ++      G+++ A      M      +P +V+ Y   
Sbjct: 9   ALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSM----GCDP-NVVTYTAL 63

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF 320
           +    R K+++EA+K L  M+   C P L  ++  +D L KL+    A  +   M+  GF
Sbjct: 64  IAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGF 123

Query: 321 NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEV 380
              PN++ +N+++   C   +VD+  +    MV  G  P+ +TY+ + + L K+++  E 
Sbjct: 124 --APNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEA 181

Query: 381 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 440
           ++   EM  +   P     +  I  L  AD+ E A ++   +  +G  P     + ++  
Sbjct: 182 KEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHA 241

Query: 441 LRNLGRLSDVRRFAEEMLNRR----ILIYEVTMHKLKK 474
               G+L + ++  +EM  +R    ++ Y   +  L K
Sbjct: 242 FCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCK 279



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 116/253 (45%), Gaps = 6/253 (2%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSYCGAG 161
           R AG G       ++ ++    K+G+  +    ++ M K+     + T+ ++ D  C  G
Sbjct: 222 RMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLG 281

Query: 162 KYDEAVMSFDVMSMHG-VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDS 219
           K  EA +  D M   G V  DVV  +++++ +C+  +    A + L+R+ K   +PD  +
Sbjct: 282 KIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKS-DMLVEAQKLLDRMCKAGCNPDVVT 340

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           +  +++G  K G +EEA      M +R    P +V+ Y T +  L + ++VDEA + +  
Sbjct: 341 YTTIIDGLCKCGRLEEAEYLLQGM-KRAGCAP-NVVTYTTLISGLCKARKVDEAERVMEE 398

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
           M+   C P L  ++  ++ L        A QL   M        P+   Y  ++  L ++
Sbjct: 399 MRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSS 458

Query: 340 DDVDNVFRFFDQM 352
           D V    +  +QM
Sbjct: 459 DLVQEAEQLLEQM 471



 Score = 46.2 bits (108), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 31/156 (19%), Positives = 65/156 (41%), Gaps = 4/156 (2%)

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           PN++ Y A+I        ++   +  ++M   G  P+ +TYN++ + L K   V   +  
Sbjct: 55  PNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDV 114

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
             +MI+  + P  +   + +         + A ++   ++  G+ P   + + L+ GL  
Sbjct: 115 VKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCK 174

Query: 444 LGRLSDVRRFAEEMLNRRI----LIYEVTMHKLKKA 475
             +  + +   EEM    +      Y   +H L KA
Sbjct: 175 SQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKA 210


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 170/377 (45%), Gaps = 13/377 (3%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           RG   +P    +N +V    + G  +     V VM+E GV  SL TF ++ +  C AG+ 
Sbjct: 182 RGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGRM 241

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
           ++A   FD M+  G+  D V+ N+L+S  C+          F    +K V PD  +F  L
Sbjct: 242 EDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSL 301

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           +    + GN+E A    G+M ER     E    +   +    R   +D+AL  ++ M+  
Sbjct: 302 IHAMCRAGNLERAVALVGQMRERGLRMNE--FTFTALIDGFCRNGFLDDALLAMKEMREC 359

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
              P++  ++  ++   KL     A +L   M   G    P+++ Y+ ++   C   D D
Sbjct: 360 RIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMK--PDVVTYSTILSGYCKIGDTD 417

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
           + F    +M+  G  PD++TY+ +   L + +R+ +  + F +M++   QP      T I
Sbjct: 418 SAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLI 477

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR-----FAEEML 458
                    + A+ + + +++ G+LP   + + L+ GL    R  + +R     + E+ +
Sbjct: 478 DGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKLYYEDPV 537

Query: 459 NRRILIYEVTMHKLKKA 475
              I  YE  MH  + A
Sbjct: 538 PDNI-KYEALMHCCRTA 553



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 89/224 (39%), Gaps = 4/224 (1%)

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL-W 312
           +LAY   L+ L     +  A + L  M  +   P +  ++  +  L        A+ +  
Sbjct: 120 LLAYNAVLLAL-SDASLPSARRLLASMLRDGVAPNVYTYNILVRALCARGQREEALGVVG 178

Query: 313 DIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 372
           D M G G    PN++ YN ++   C   +VD   R    M   G  P  +T+N +   L 
Sbjct: 179 DDMRGAG--CAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLC 236

Query: 373 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 432
           K  R+ +  K F EM +    P  ++  T ++    A     A+ ++  + + G++P   
Sbjct: 237 KAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVV 296

Query: 433 SANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
           +   L+  +   G L        +M  R + + E T   L   F
Sbjct: 297 TFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGF 340


>gi|356498873|ref|XP_003518272.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 566

 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 95/397 (23%), Positives = 186/397 (46%), Gaps = 15/397 (3%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G  +   ++N++++   K+G  E+   A+RV+    V  +  T+ ++  S C  GK  +A
Sbjct: 134 GAVIDANSYNVLINAYCKSGEIEE---ALRVLDHTSVAPNAATYDAVLCSLCDRGKLKQA 190

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLE 225
           +   D         DVV    L+ A C+ E+   +A++  N ++ K   PD  ++ +L++
Sbjct: 191 MQVLDRQLQSKCYPDVVTCTVLIDATCK-ESGVGQAMKLFNEMRGKGCKPDVVTYNVLIK 249

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+ KEG ++EA   F + +  +    + V+++   L +L  G +  +A+K L  M  + C
Sbjct: 250 GFCKEGRLDEA-IIFLKKLPSYGCQSD-VISHNMILRSLCSGGRWMDAMKLLATMLRKGC 307

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
           FP++  F+  ++ L +      A+ + ++M   G    PN   +N +I   CN   +D  
Sbjct: 308 FPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHT--PNSRSFNPLIQGFCNRKGIDRA 365

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
               + MV  G +PD +TYN++   L K+ +V +      ++      P+ ++  T I  
Sbjct: 366 IEHLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDG 425

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI--- 462
           LL   + E+A+E+   +   G+ P   +   ++ GL   G++ +  +F   +    I   
Sbjct: 426 LLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVHEAIKFFHYLKGFGIKPN 485

Query: 463 -LIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQ 498
             IY   M  L KA    S ++  + D +   CK ++
Sbjct: 486 AFIYNSIMMGLCKA-QQTSLAIDFLVDMVANGCKPTE 521



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 158/355 (44%), Gaps = 12/355 (3%)

Query: 81  PDLVHEVLQLSYDSPSSAVD-----FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNA 135
           PD+V   + +      S V      F    G+G +     +N+++    K GR ++    
Sbjct: 204 PDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEGRLDEAIIF 263

Query: 136 VRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194
           ++ +   G  S + +   I  S C  G++ +A+     M   G    VV  N L++ +C 
Sbjct: 264 LKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCFPSVVTFNILINFLC- 322

Query: 195 QENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH 253
           Q+    +AL  L  + K    P+  SF  L++G+     ++ A +    MV R  + P+ 
Sbjct: 323 QKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNRKGIDRAIEHLEIMVSRGCY-PD- 380

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
           ++ Y   L  L +  +VD+A+  L  +  + C P+L  ++  +D L+K+  +  AV+L +
Sbjct: 381 IVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLE 440

Query: 314 IMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 373
            M   G  L P+LI   +V+G L     V    +FF  +   G  P++  YN I   L K
Sbjct: 441 EMCYKG--LKPDLITCTSVVGGLSREGKVHEAIKFFHYLKGFGIKPNAFIYNSIMMGLCK 498

Query: 374 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 428
            ++      F  +M+ N  +PT  +  T I  +      E A ++ N +   G++
Sbjct: 499 AQQTSLAIDFLVDMVANGCKPTEASYTTLIKGITYEGLAEEASKLSNELYSRGLV 553



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/201 (20%), Positives = 88/201 (43%), Gaps = 13/201 (6%)

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF 320
           L  LIR  +++E  +FL  M  +   P +   +  +    K+  + +A ++  I+   G 
Sbjct: 76  LCRLIRNGELEEGSRFLEYMTNKGKIPDVVACTALIREFCKIGRTKNATRIMGILEESGA 135

Query: 321 NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEV 380
            +  N   YN +I   C + +++   R  D        P++ TY+ +   L    ++ + 
Sbjct: 136 VIDAN--SYNVLINAYCKSGEIEEALRVLDHT---SVAPNAATYDAVLCSLCDRGKLKQA 190

Query: 381 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI----AIEIWNYILENGILPLEASANE 436
            +     ++++  P  + C    T+L+DA   E     A++++N +   G  P   + N 
Sbjct: 191 MQVLDRQLQSKCYPDVVTC----TVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNV 246

Query: 437 LLVGLRNLGRLSDVRRFAEEM 457
           L+ G    GRL +   F +++
Sbjct: 247 LIKGFCKEGRLDEAIIFLKKL 267


>gi|255581238|ref|XP_002531431.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528950|gb|EEF30943.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 737

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 104/406 (25%), Positives = 185/406 (45%), Gaps = 11/406 (2%)

Query: 81  PDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWNAVRV 138
           P  V  VLQL  D    A+DFF WAGR  R    P  + +M+ VL K    +     +R+
Sbjct: 103 PRQVCAVLQLQSDE-RIALDFFYWAGRQWRYRHDPIVYYMMLQVLSKTKLCQGARRVLRL 161

Query: 139 MKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           M   G+   P  FA +  SY  AGK   A+    +M   GVE +++  N+ +  +    N
Sbjct: 162 MVRRGIARRPEAFAHVMVSYSRAGKLRNAMQVLTMMQKAGVEPNLLICNTAIHVLV-MAN 220

Query: 198 QTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
           +  +AL FL R++ + + P+  ++  L++G+     VE A +   EM   F+  P   ++
Sbjct: 221 KLEKALRFLERMQLVGITPNVVTYNCLIKGYCDLYQVEHAMELIAEMP--FKGCPPDKVS 278

Query: 257 YETFLITLIRGKQVDEALKFL-RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
           Y T +  L + K++ E    + +++K    FP    ++  + +L K   +  A++     
Sbjct: 279 YYTVMGFLCQDKRIKEVRNLMEKMVKDNKLFPDQVTYNTLVHMLSKHGHADEALEFLRET 338

Query: 316 VGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 375
              GF +  + + Y+A++   C    +D      ++M+  G  PD +TY  +   L K  
Sbjct: 339 EERGFQV--DKVGYSAIVNSFCMQGRMDRAKEIVNEMITKGCSPDVVTYTAVVNGLCKVG 396

Query: 376 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 435
           +V E +K   +M K+  +P  ++    +  L        A E+ N   E+   P   + +
Sbjct: 397 KVEEAKKMLQQMYKHGCKPNTVSYTALLNGLCQHGNSLEAREMMNTSEEDWWTPNAITYS 456

Query: 436 ELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
            ++ GLR  G+LS+      EML +      V ++ L K+   E +
Sbjct: 457 VVMHGLRREGKLSEACDVVREMLTKGFFPTPVEINLLIKSLCLEQK 502



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 148/336 (44%), Gaps = 15/336 (4%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N +V +L K+G  ++    +R  +E G  +    +++I +S+C  G+ D A    + M
Sbjct: 314 TYNTLVHMLSKHGHADEALEFLRETEERGFQVDKVGYSAIVNSFCMQGRMDRAKEIVNEM 373

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGN 232
              G   DVV   ++++ +C+   +   A + L ++ K    P+  S+  LL G  + GN
Sbjct: 374 ITKGCSPDVVTYTAVVNGLCKV-GKVEEAKKMLQQMYKHGCKPNTVSYTALLNGLCQHGN 432

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT---L 289
             EA +      E + W P + + Y   +  L R  ++ EA   +R M  +  FPT   +
Sbjct: 433 SLEAREMMNTSEEDW-WTP-NAITYSVVMHGLRREGKLSEACDVVREMLTKGFFPTPVEI 490

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
                +L +  K+N+   A +  +  +  G  +  N + +  VI   C +D++D      
Sbjct: 491 NLLIKSLCLEQKMNE---AKKFMEECLNRGCAV--NAVNFTTVIHGFCQSDNIDTALSLL 545

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 409
           D M  +   PD++T+  I + L K  R+ E   +  +M+K    PTP+     I      
Sbjct: 546 DDMYLNNKHPDAVTFTAIIDALGKKGRIEEATVYTMKMLKKGLDPTPVTYRAVIHQYCKM 605

Query: 410 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
              E  I++   +L         + N+++  L N G
Sbjct: 606 GRVEELIKLLGKMLSRS--KCRTAYNQVIEKLCNFG 639


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 150/335 (44%), Gaps = 6/335 (1%)

Query: 97  SAVDFFRWAG-RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           SA++ FR    +G     Y +  +V+ LGK GR ++  +    M E G+  ++PT+  + 
Sbjct: 118 SAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLM 177

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD 214
           D++   G+ D A+  F  M   G +  VV  N LL A+C      +    F         
Sbjct: 178 DAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCS 237

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           PD  +++ L+ G  K G VEEA+K F EMV+R       ++ Y + L TL +   +D   
Sbjct: 238 PDSYTYSTLVNGLGKSGRVEEAHKVFREMVDR--GVAVDLVNYNSLLATLAKAGNMDRVW 295

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
           K ++ M  +   P    F+  +D L K N    A +++  MV  G    P+LI YN +I 
Sbjct: 296 KLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCK--PDLISYNILID 353

Query: 335 LLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
                 D     +  ++MV  G  P++ TYN +   L  + +V E      EM     +P
Sbjct: 354 SYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRP 413

Query: 395 TPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
             +     + ML    E + A  ++  + + G+ P
Sbjct: 414 DVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEP 448



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 152/351 (43%), Gaps = 10/351 (2%)

Query: 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKE-DGVLSLPT---FASIFDSYCGAGKYDEAVM 168
           P   N +V ++   GR  +  +A  +  + +     PT   F  + D    +G+++ A +
Sbjct: 27  PLRPNTLVKLITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLIDILVNSGEFERAEL 86

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGW 227
            +  +   G + D  A N L+    R   Q   A+E    +K K  +PD  ++  L+   
Sbjct: 87  VYKKLVQKGCQLDRFAYNVLIRYFGRS-GQLDSAMEMFREMKIKGSEPDEYTYGFLVNAL 145

Query: 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
            K G V+EA   F  M+ER    P ++  Y   +    +  Q+D AL     MK     P
Sbjct: 146 GKAGRVQEARSFFDAMLER-GLTP-NIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQP 203

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFR 347
           ++  ++  LD L        A +L+  M G G +  P+   Y+ ++  L  +  V+   +
Sbjct: 204 SVVTYNILLDALCSAGRVGAARKLFHKMTGDGCS--PDSYTYSTLVNGLGKSGRVEEAHK 261

Query: 348 FFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 407
            F +MV  G   D + YN +   L K   +  V K   EM +  + P   +  T +  L 
Sbjct: 262 VFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALG 321

Query: 408 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
            A++P+ A E++  ++E+G  P   S N L+      G  +  R+  EEM+
Sbjct: 322 KANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMV 372



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 162/347 (46%), Gaps = 9/347 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFA-SIFDSYCG-AGKYDEAVMSFD 171
           +A+  ++D+L  +G FE+     + + + G   L  FA ++   Y G +G+ D A+  F 
Sbjct: 66  HAFTKLIDILVNSGEFERAELVYKKLVQKGC-QLDRFAYNVLIRYFGRSGQLDSAMEMFR 124

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQEN-QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
            M + G E D      L++A+ +    Q +R+  F   +++ + P+  ++ +L++ + K 
Sbjct: 125 EMKIKGSEPDEYTYGFLVNALGKAGRVQEARSF-FDAMLERGLTPNIPTYNLLMDAFRKV 183

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           G ++ A   F EM +R  + P  V+ Y   L  L    +V  A K    M G+ C P   
Sbjct: 184 GQLDMALGLFAEM-KRRGFQPS-VVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSY 241

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
            +S  ++ L K      A +++  MV  G  +  +L+ YN+++  L    ++D V++   
Sbjct: 242 TYSTLVNGLGKSGRVEEAHKVFREMVDRGVAV--DLVNYNSLLATLAKAGNMDRVWKLMK 299

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
           +M   G  PD+ ++N I + L K  +     + F  M+++  +P  ++    I       
Sbjct: 300 EMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFG 359

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           +   A ++   ++E G +P   + N L+  L   G++ +     EEM
Sbjct: 360 DAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEM 406



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/256 (21%), Positives = 100/256 (39%), Gaps = 41/256 (16%)

Query: 261 LITLI----RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
           L+ LI    RG +  +A       +   C PT+  F+  +DILV   +   A  ++  +V
Sbjct: 33  LVKLITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLIDILVNSGEFERAELVYKKLV 92

Query: 317 GIG-------FNLM--------------------------PNLIMYNAVIGLLCNNDDVD 343
             G       +N++                          P+   Y  ++  L     V 
Sbjct: 93  QKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQ 152

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
               FFD M+  G  P+  TYN++ +   K  ++      F EM +  +QP+ +     +
Sbjct: 153 EARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILL 212

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
             L  A     A ++++ +  +G  P   + + L+ GL   GR+ +  +   EM++R + 
Sbjct: 213 DALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVA 272

Query: 464 I----YEVTMHKLKKA 475
           +    Y   +  L KA
Sbjct: 273 VDLVNYNSLLATLAKA 288


>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 788

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 154/345 (44%), Gaps = 5/345 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           ++ ++D L K+G           + E G+L    T+ S+ D  C  G++ E       M 
Sbjct: 198 YSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMV 257

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
              V+ D    N L+ A+C++              K+   PD  ++  L+EG+    NV 
Sbjct: 258 RENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVH 317

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           EA + F  MV+R    P+ VL Y   +    + K VDEA+   + +  +N  PT+  +++
Sbjct: 318 EARELFNRMVKR-GLEPD-VLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNS 375

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
            +D L      +H  +L D M G      P+++ YN +I  LC    +         M+ 
Sbjct: 376 LIDGLCNSGRISHVKKLLDEMHGSA--QPPDVVTYNILIDALCKEGRILEALGVLVMMMK 433

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 414
            G  P+ +TYN + +       V+  +  F+ M+K+  +P  LN    I      +  + 
Sbjct: 434 KGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDE 493

Query: 415 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
           AI ++  +    ++P  AS N L+ GL NLGR+  V+   +EM +
Sbjct: 494 AIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCD 538



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 140/321 (43%), Gaps = 14/321 (4%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N+++D L K GR  +    + +M + G    + T+ ++ + YC      EA   F+ 
Sbjct: 266 YTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNR 325

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M   G+E DV+  N L+   C+ +      + F     K + P   S+  L++G    G 
Sbjct: 326 MVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGR 385

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +    K   EM       P  V+ Y   +  L +  ++ EAL  L +M  +   P +  +
Sbjct: 386 ISHVKKLLDEM--HGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTY 443

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  +D     N+   A  +++ MV  G  L P+++ YN +I   C  + VD     F +M
Sbjct: 444 NAMMDGYCLRNNVNVAKDIFNRMVKSG--LEPDILNYNVLINGYCKTEMVDEAIVLFKEM 501

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA--- 409
                 PD  +YN + + L    R+  V++   EM  +   P          +LLDA   
Sbjct: 502 RHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPD----VITYNILLDAFCK 557

Query: 410 DEP-EIAIEIWNYILENGILP 429
            +P + AI ++  I+E GI P
Sbjct: 558 TQPFDKAISLFRQIVE-GIWP 577



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 88/377 (23%), Positives = 154/377 (40%), Gaps = 51/377 (13%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRF-EQMWNAVRVMKEDGVLSLPTFASIFDSYCG 159
           F R   RG       +N+++D   K     E M     +  ++ V ++ ++ S+ D  C 
Sbjct: 323 FNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCN 382

Query: 160 AGKYDEAVMSFDVMSMHGVEQ--DVVAVNSLLSAICRQENQTSRALEFLN----RVKKIV 213
           +G+        D   MHG  Q  DVV  N L+ A+C++     R LE L      +KK V
Sbjct: 383 SGRISHVKKLLD--EMHGSAQPPDVVTYNILIDALCKE----GRILEALGVLVMMMKKGV 436

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
            P+  ++  +++G+    NV  A   F  MV+     P+ +L Y   +    + + VDEA
Sbjct: 437 KPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKS-GLEPD-ILNYNVLINGYCKTEMVDEA 494

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
           +   + M+ +N  P +  +++ +D L  L    H  +L D M   G +  P++I YN ++
Sbjct: 495 IVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQS--PDVITYNILL 552

Query: 334 GLLCNNDDVDNVFRFFDQMV----------------------------------FHGAFP 359
              C     D     F Q+V                                   HG  P
Sbjct: 553 DAFCKTQPFDKAISLFRQIVEGIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSP 612

Query: 360 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 419
           +  TY ++   L K+    E      +M  N+  P  +     I +LL  +E + A ++ 
Sbjct: 613 NVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQRNETDKAEKLR 672

Query: 420 NYILENGILPLEASANE 436
             ++  G++ +E S N+
Sbjct: 673 EEMIARGLVNIEKSLNQ 689



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 86/371 (23%), Positives = 144/371 (38%), Gaps = 41/371 (11%)

Query: 125 KNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGA----GKYDEAVMSFDVMSMHGVEQ 180
           KN RF  + +AV        +  P   S+FD   GA    G Y  A+  F  +   G+  
Sbjct: 29  KNCRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISP 88

Query: 181 DVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKT 239
            +     L++    Q + T+ A   L  + K    P+  +F  ++ G+   G + +A   
Sbjct: 89  SIATFTILINCYFHQ-SHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDF 147

Query: 240 FGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299
              ++ +     +    Y T +  L +  Q+  AL  L+ M+  +  P L  +S  +D L
Sbjct: 148 CQNLLAQGYLFDQ--FTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGL 205

Query: 300 VK-------------------LNDSTHAVQLWDIMVGIGF--------------NLMPNL 326
            K                   L D+     L D    +G               N+ P+ 
Sbjct: 206 CKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDD 265

Query: 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 386
             +N +I  LC    +         M   G  PD +TYN + E     + VHE  + F+ 
Sbjct: 266 YTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNR 325

Query: 387 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 446
           M+K   +P  LN    I         + A+ ++  +    ++P  AS N L+ GL N GR
Sbjct: 326 MVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGR 385

Query: 447 LSDVRRFAEEM 457
           +S V++  +EM
Sbjct: 386 ISHVKKLLDEM 396



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 103/250 (41%), Gaps = 4/250 (1%)

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           NV++A   F  MV  F   P  V  ++  L  ++R      A+     ++ +   P++  
Sbjct: 35  NVDDAVTCFNRMVRVFPPPPTSV--FDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIAT 92

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           F+  ++     + +  A  L   ++  G+   PNL+ +N +I   C N  +     F   
Sbjct: 93  FTILINCYFHQSHTAFAFSLLATILKSGYQ--PNLVTFNTIINGFCINGMIFKALDFCQN 150

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           ++  G   D  TY  +   L KN ++        EM K+  QP  +  +  I  L     
Sbjct: 151 LLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGF 210

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK 471
              A+ + + I E GIL    + N L+ G  ++GR  +V +   +M+   +   + T + 
Sbjct: 211 VSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNI 270

Query: 472 LKKAFYNESR 481
           L  A   E R
Sbjct: 271 LIDALCKEGR 280


>gi|255582957|ref|XP_002532249.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528067|gb|EEF30143.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 507

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 103/399 (25%), Positives = 189/399 (47%), Gaps = 15/399 (3%)

Query: 68  IESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQR--LSPYAWNLMVDVLGK 125
           IE AL       T DL+ +VL+        A+ FF W  +G +  +   A+N ++D+LGK
Sbjct: 67  IELALTQCNPTVTEDLILKVLKRHRSDWKPALIFFNWVSKGGKVLMGSGAYNEILDILGK 126

Query: 126 NGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVA 184
             RF+++   + +M K +G+++  T+  + + Y  A K +EA+  F+     G+E D+V+
Sbjct: 127 MRRFDELSQVLDIMSKREGLVNEETYRVLVNRYAAAHKVEEAIEIFNTRRDIGLEIDLVS 186

Query: 185 VNSLLSAICRQEN-QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
             +LL  +CR ++ Q + +L  L    K    D  +  I+L GW   GNV EA + + ++
Sbjct: 187 FQNLLMFLCRYKHVQIAESL--LYSKGKDFGMDIKTMNIVLNGWCVLGNVHEAKRFWKDI 244

Query: 244 VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303
           +   +  P+ +  Y TF+  L +  ++  ALK  R M  + C P +   +  +D L   N
Sbjct: 245 IGS-KCKPD-LFTYGTFIKALTKKGKLGTALKIYRAMWEKQCKPDVVICNCIIDALCFKN 302

Query: 304 DSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH--GAFPDS 361
               A++++  M   G   +PN   YN++I        ++ V+   D+M+       PD 
Sbjct: 303 RVPEALEVFREMSQQG--CLPNGATYNSLIKHFSRIRRMEKVYELLDEMLDKKGSCMPDH 360

Query: 362 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 421
           +T+N + + L   K+  E+      M +N    +       + +  D D  E   + WN 
Sbjct: 361 ITFNYLLKAL---KKPEELPLVLERMERNGCMISTDTYNLILRLYADWDCEERVGDTWNE 417

Query: 422 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           + + G+ P   S   ++  L   GR++D   +  EM ++
Sbjct: 418 MEKLGLGPDRRSYTIMIHWLYEKGRINDALHYFGEMTSK 456



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 60/285 (21%), Positives = 115/285 (40%), Gaps = 13/285 (4%)

Query: 182 VVAVNSLLSAICRQENQTSRALEFLNRVKK--IVDPDGDSFAILLEGWEKEGNVEEANKT 239
            V  + +L  + R  +    AL F N V K   V     ++  +L+   K    +E ++ 
Sbjct: 77  TVTEDLILKVLKRHRSDWKPALIFFNWVSKGGKVLMGSGAYNEILDILGKMRRFDELSQV 136

Query: 240 FGEMVERFEWNPEHVLAYETFLITLIR---GKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
              M +R     E ++  ET+ + + R     +V+EA++     +       L  F N L
Sbjct: 137 LDIMSKR-----EGLVNEETYRVLVNRYAAAHKVEEAIEIFNTRRDIGLEIDLVSFQNLL 191

Query: 297 DILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG 356
             L +     H      ++   G +   ++   N V+   C   +V    RF+  ++   
Sbjct: 192 MFLCRYK---HVQIAESLLYSKGKDFGMDIKTMNIVLNGWCVLGNVHEAKRFWKDIIGSK 248

Query: 357 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 416
             PD  TY    + L K  ++    K +  M + + +P  + C   I  L   +    A+
Sbjct: 249 CKPDLFTYGTFIKALTKKGKLGTALKIYRAMWEKQCKPDVVICNCIIDALCFKNRVPEAL 308

Query: 417 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461
           E++  + + G LP  A+ N L+     + R+  V    +EML+++
Sbjct: 309 EVFREMSQQGCLPNGATYNSLIKHFSRIRRMEKVYELLDEMLDKK 353


>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
          Length = 850

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/379 (23%), Positives = 177/379 (46%), Gaps = 7/379 (1%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G +++ Y  N+M++ L KN + E   + +  M+E GV   + T+ ++ ++YC  G  +EA
Sbjct: 353 GVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEA 412

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLE 225
               D MS  G++  V   N++++ +C+   +  RA   L+ + KI + PD  ++ ILL 
Sbjct: 413 FELMDSMSGKGLKPCVFTYNAIINGLCKT-GKYLRAKGVLDEMLKIGMSPDTATYNILLV 471

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
              +  N+ +A + F EM    +     ++++   +  L +   +D+ALK+ R MK    
Sbjct: 472 ECCRNDNMMDAERIFDEMPS--QGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGL 529

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P    ++  +    +    + A+++ D M+  G  L  +++ YN ++  LC    +   
Sbjct: 530 APDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXL--DVVTYNTILNGLCKEKMLSEA 587

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
              F +M   G FPD  T+  +     K+  +++    F  MI+   +P  +   T I  
Sbjct: 588 DELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDG 647

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 465
                E E   E+WN ++   I P   S   L+ G  N+G +S+  R  +EM+ +     
Sbjct: 648 FCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEAT 707

Query: 466 EVTMHKLKKAFYNESRSMR 484
            +T + + K +     +++
Sbjct: 708 IITCNTIVKGYCRAGNAVK 726



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 148/347 (42%), Gaps = 5/347 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIF-DSYCGAGKYDEAVMSFDVM 173
           +++ ++ +L KNG  +Q     R MK  G+       +I    +C  G   EA+   D M
Sbjct: 500 SFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEM 559

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G   DVV  N++L+ +C+++  +     F    ++ V PD  +F  L+ G+ K+GN+
Sbjct: 560 LEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNM 619

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            +A   F  M++R    P+ V+ Y T +    +G ++++  +    M     +P    + 
Sbjct: 620 NKAVTLFEMMIQR-NLKPD-VVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYG 677

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             ++    +   + A +LWD MV  GF     +I  N ++   C   +      F   M+
Sbjct: 678 ILINGYCNMGCVSEAFRLWDEMVEKGFE--ATIITCNTIVKGYCRAGNAVKADEFLSNML 735

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G  PD +TYN +    IK + +       ++M  +   P  +     +         +
Sbjct: 736 LKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQ 795

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
            A  I   ++E G+ P  ++   L+ G      L +  R  +EML R
Sbjct: 796 EAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQR 842



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 86/379 (22%), Positives = 169/379 (44%), Gaps = 7/379 (1%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           +G+G +   + +N +++ L K G++ +    +  M + G+     T+  +    C     
Sbjct: 420 SGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNM 479

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAI 222
            +A   FD M   GV  D+V+ ++L+  + +      +AL++   +K   + PD   + I
Sbjct: 480 MDAERIFDEMPSQGVVPDLVSFSALIGLLSKN-GCLDQALKYFRDMKNAGLAPDNVIYTI 538

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+ G+ + G + EA K   EM+E  +     V+ Y T L  L + K + EA +    M  
Sbjct: 539 LIGGFCRNGVMSEALKVRDEMLE--QGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTE 596

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
              FP    F+  ++   K  +   AV L+++M  I  NL P+++ YN +I   C   ++
Sbjct: 597 RGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMM--IQRNLKPDVVTYNTLIDGFCKGSEM 654

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
           + V   ++ M+    +P+ ++Y ++         V E  + + EM++  ++ T + C T 
Sbjct: 655 EKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTI 714

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
           +     A     A E  + +L  GI+P   + N L+ G      +        +M N  +
Sbjct: 715 VKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGL 774

Query: 463 LIYEVTMHKLKKAFYNESR 481
           L   +T + +   F  + R
Sbjct: 775 LPDVITYNVILNGFSRQGR 793



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/290 (21%), Positives = 117/290 (40%), Gaps = 40/290 (13%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G  L    +N +++ L K     +       M E GV     TF ++ + Y   G  ++
Sbjct: 562 QGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNK 621

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILL 224
           AV  F++M    ++ DVV  N+L+   C+  ++  +  E  N  + + + P+  S+ IL+
Sbjct: 622 AVTLFEMMIQRNLKPDVVTYNTLIDGFCKG-SEMEKVNELWNDMISRRIYPNHISYGILI 680

Query: 225 EGWEKEGNVEEANKTFGEMVER-FEWN--------------------------------- 250
            G+   G V EA + + EMVE+ FE                                   
Sbjct: 681 NGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIV 740

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P+ +  Y T +   I+ + +D A   +  M+     P +  ++  L+   +      A  
Sbjct: 741 PDGI-TYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAEL 799

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPD 360
           +   M+  G N  P+   Y ++I      +++   FR  D+M+  G  PD
Sbjct: 800 IMLKMIERGVN--PDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPD 847


>gi|296089633|emb|CBI39452.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 114/413 (27%), Positives = 186/413 (45%), Gaps = 23/413 (5%)

Query: 65  SDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA-GRGQRLSPYAWNLMVDVL 123
           S +++S+LA      +   V + LQL   +P+ A+ FFRW   +G   +  ++ LM+++L
Sbjct: 79  SHELQSSLAELAPSLSKTTVLQTLQL-IRTPAKALHFFRWVEAKGFTHNEQSYFLMIEIL 137

Query: 124 GKNGRFEQMWNAVRVM--KEDGVLSLPT--FASIFDSYCGAGKYDEAVMSFDVMSMHGVE 179
           G++       N V  +  K  G + L    F S+  SY  AG + E++  F  M   GV 
Sbjct: 138 GRSRNLNAARNFVFSIEKKSGGAVKLGDRFFNSLIRSYGWAGLFQESIKVFKTMKEIGVS 197

Query: 180 QDVVAVNSLLSAICRQENQTSRALEFLNRVKKI--VDPDGDSFAILLEGWEKEGNVEEAN 237
             VV  NSLLS + ++  +TS A +  + +     V PD  +F IL+ G+     V+E  
Sbjct: 198 PSVVTFNSLLSIVLKR-GRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGF 256

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR--VMKGENCFPTLKFFSNA 295
             F EM  RF+ +P+ V+ Y T +  L R  +V  A   ++  V K  N  P +  ++  
Sbjct: 257 WFFKEM-SRFKCDPD-VVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTL 314

Query: 296 LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
           +       D   A+ L   MV  G  L PN I YN +I  LC    +D +    + MV  
Sbjct: 315 IRGYCMKQDMAEALSLLAEMVSRG--LKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGD 372

Query: 356 GAF-PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 414
           G F PD+ T N + +      ++ E    F +M +   QP     +  +  L    +   
Sbjct: 373 GGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRR 432

Query: 415 AIEIWNYILENGIL-------PLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           A E ++ + E  IL       PL A+ N +   L + G+     R   +++ R
Sbjct: 433 AEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKR 485



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 68/365 (18%), Positives = 158/365 (43%), Gaps = 20/365 (5%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG--VLSLPTFASIFDSYCGAGKYD 164
           RG + +   +N ++  L +  + +++   +  M  DG  +    T  ++  ++C  GK +
Sbjct: 337 RGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLE 396

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV--KKIV------DPD 216
           EA   F+ MS   V+ D    + L+ ++C Q     RA EF + +  K+I+       P 
Sbjct: 397 EAFSVFEKMSELRVQPDSATYSVLVRSLC-QRGDFRRAEEFFDELAEKEILLHDVGCKPL 455

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
             ++  + E     G  ++A + F ++++R   +P    +Y+T ++   R    +     
Sbjct: 456 VAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDPP---SYKTLILGHCREGTPEAGFDL 512

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLL 336
           L +M   +  P  + +   +D L+K  D   A +  + M+      +P   ++++++  L
Sbjct: 513 LVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSH--LPTTAIFHSILAAL 570

Query: 337 ----CNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 392
               C ++    V    ++ +       + T   +   L +++++ E +K     ++   
Sbjct: 571 VEKGCAHESASLVKLMLERRIRQNIDLSTHTMEELVSFLCQSRKLLEAQKMLLFSLEKRQ 630

Query: 393 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 452
                 C+T I+ L  A +   A  ++  ++E G+        +L + L   GRL++ + 
Sbjct: 631 SVDIDMCSTVISGLCKAHKVSEAFALYYELVEKGMQHRLTCQEDLRISLEAEGRLNEAKF 690

Query: 453 FAEEM 457
            +++M
Sbjct: 691 VSKKM 695


>gi|225433712|ref|XP_002266503.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Vitis vinifera]
          Length = 746

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 114/413 (27%), Positives = 186/413 (45%), Gaps = 23/413 (5%)

Query: 65  SDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA-GRGQRLSPYAWNLMVDVL 123
           S +++S+LA      +   V + LQL   +P+ A+ FFRW   +G   +  ++ LM+++L
Sbjct: 79  SHELQSSLAELAPSLSKTTVLQTLQL-IRTPAKALHFFRWVEAKGFTHNEQSYFLMIEIL 137

Query: 124 GKNGRFEQMWNAVRVM--KEDGVLSLPT--FASIFDSYCGAGKYDEAVMSFDVMSMHGVE 179
           G++       N V  +  K  G + L    F S+  SY  AG + E++  F  M   GV 
Sbjct: 138 GRSRNLNAARNFVFSIEKKSGGAVKLGDRFFNSLIRSYGWAGLFQESIKVFKTMKEIGVS 197

Query: 180 QDVVAVNSLLSAICRQENQTSRALEFLNRVKKI--VDPDGDSFAILLEGWEKEGNVEEAN 237
             VV  NSLLS + ++  +TS A +  + +     V PD  +F IL+ G+     V+E  
Sbjct: 198 PSVVTFNSLLSIVLKR-GRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGF 256

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM--KGENCFPTLKFFSNA 295
             F EM  RF+ +P+ V+ Y T +  L R  +V  A   ++ M  K  N  P +  ++  
Sbjct: 257 WFFKEM-SRFKCDPD-VVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTL 314

Query: 296 LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
           +       D   A+ L   MV  G  L PN I YN +I  LC    +D +    + MV  
Sbjct: 315 IRGYCMKQDMAEALSLLAEMVSRG--LKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGD 372

Query: 356 GAF-PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 414
           G F PD+ T N + +      ++ E    F +M +   QP     +  +  L    +   
Sbjct: 373 GGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRR 432

Query: 415 AIEIWNYILENGIL-------PLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           A E ++ + E  IL       PL A+ N +   L + G+     R   +++ R
Sbjct: 433 AEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKR 485



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 70/393 (17%), Positives = 164/393 (41%), Gaps = 48/393 (12%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG--VLSLPTFASIFDSYCGAGKYD 164
           RG + +   +N ++  L +  + +++   +  M  DG  +    T  ++  ++C  GK +
Sbjct: 337 RGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLE 396

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV--KKIV------DPD 216
           EA   F+ MS   V+ D    + L+ ++C Q     RA EF + +  K+I+       P 
Sbjct: 397 EAFSVFEKMSELRVQPDSATYSVLVRSLC-QRGDFRRAEEFFDELAEKEILLHDVGCKPL 455

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
             ++  + E     G  ++A + F ++++R   +P    +Y+T ++   R    +     
Sbjct: 456 VAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDPP---SYKTLILGHCREGTPEAGFDL 512

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLL 336
           L +M   +  P  + +   +D L+K  D   A +  + M+      +P   ++++++  L
Sbjct: 513 LVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSH--LPTTAIFHSILAAL 570

Query: 337 ----CNNDDVDNVFRFFDQ--------------MVFHGAFPDS--LTYNMIFE------- 369
               C ++    V    ++              +++     D   +T  +++E       
Sbjct: 571 VEKGCAHESASLVKLMLERRIRQNIDLSTHTVRLLYKSGLQDKAFMTIGLLYENGYLVKM 630

Query: 370 -----CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 424
                 L +++++ E +K     ++         C+T I+ L  A +   A  ++  ++E
Sbjct: 631 EELVSFLCQSRKLLEAQKMLLFSLEKRQSVDIDMCSTVISGLCKAHKVSEAFALYYELVE 690

Query: 425 NGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
            G+        +L + L   GRL++ +  +++M
Sbjct: 691 KGMQHRLTCQEDLRISLEAEGRLNEAKFVSKKM 723


>gi|224093900|ref|XP_002310039.1| predicted protein [Populus trichocarpa]
 gi|222852942|gb|EEE90489.1| predicted protein [Populus trichocarpa]
          Length = 507

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 113/474 (23%), Positives = 213/474 (44%), Gaps = 38/474 (8%)

Query: 13  KNKIIPSSS----STTTSPTSHNPHRPTRPRFPTHLDAPY--ISSSARIICEILAHASSD 66
           K++ + SS     S  T+P +HN            +DA Y  IS+S           SS 
Sbjct: 15  KSRYVSSSKIPFLSLHTNPQNHNNK-------DIQVDAIYNIISNST----------SSQ 57

Query: 67  DIESALACTGIIPTPDLVHEVLQ---LSYDSPSSAVDFFRWAG--RGQRLSPYAWNLMVD 121
           +++ +L  TG+  + DL+ +VL+    S+ +P  A+DFF +    RG   S Y+ + M+ 
Sbjct: 58  NLKQSLKSTGVFLSNDLIDKVLKRVRFSHGNPLQALDFFNFTADRRGFYHSSYSLDTMLY 117

Query: 122 VLGKNGRFEQMWNA-VRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMSMHGVE 179
           +LG++ +F+ +W+  + + ++D  L  P T   +             V SF         
Sbjct: 118 ILGRSRKFDHIWDVLIDIKRKDRNLITPRTLQVVLGRVAKVCSVRMTVESFWKFKRLVPV 177

Query: 180 QDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKT 239
            D    N+LL  +C QE   S A    + +KK   P+  +F ILL GW+     EEA   
Sbjct: 178 FDTSCFNALLRTLC-QEKSMSDARNVYHHLKKGFRPNLQTFNILLSGWKSS---EEAELF 233

Query: 240 FGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299
           + EM E     P+ ++ Y + +    +G+++++A   +  M+ E+  P +  +++ +  L
Sbjct: 234 YEEMKE-LGVKPD-IVTYNSLIDVFCKGRELEKAYGVVARMREEDILPDVITYTSIIGGL 291

Query: 300 VKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFP 359
             +     A  +   M   G    P++  YNAVI   C    +D  +    +M   G  P
Sbjct: 292 GLVGQPDKARDMLKEMKEHG--CYPDVAAYNAVIRNYCIAKRLDAAYSLMAEMESKGMSP 349

Query: 360 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 419
           ++ +YN+ F     +  +     F+  M+     P   +C   I +    ++ E+A+++W
Sbjct: 350 NATSYNLFFRVFSWSNDLRNSWDFYGRMMDAGCLPNTQSCMFLIKLFKRHEKVEMALQLW 409

Query: 420 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 473
           N ++E G       ++ LL  L ++G+L +  +   +M+ +      V+  ++K
Sbjct: 410 NDMVEKGFGSYILVSDVLLGMLCDMGKLVEAEKCFLQMVEKGHKPSNVSFRRIK 463


>gi|297807523|ref|XP_002871645.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317482|gb|EFH47904.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 524

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 112/450 (24%), Positives = 202/450 (44%), Gaps = 18/450 (4%)

Query: 49  ISSSARIICEILAHASSD--DIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAG 106
           +S     I ++L +  SD  ++ + L    + P+ +LV E+L    +   +A  FF WAG
Sbjct: 42  VSEDVGTIVKLLKNCGSDRKELRNKLEECDVKPSNELVVEILSQVRNDWETAFTFFVWAG 101

Query: 107 RGQRL--SPYAWNLMVDVLGKNGRFEQMWNAVRVMKE--DGVLSLPTFASIFDSYCGAGK 162
           + Q    S   ++ M+ +LGK  +F+  W  +  M++    +++  T   +   YC    
Sbjct: 102 KQQGYVRSVREYHSMISILGKMRKFDTAWTLIDEMRKFSPSLVNSQTLLIMIRKYCAVHD 161

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQT-SRALEFLNRVKKIVDPDGDSFA 221
             +A+ +F       +E  +    SLLSA+CR +N + +  L F N  K     D  SF 
Sbjct: 162 VGKAINTFHAYKRFKLEMGIDDFQSLLSALCRYKNVSDAEHLIFCN--KDTYPFDAKSFN 219

Query: 222 ILLEGW-EKEGNVEEANKTFGEMVERFEWNPEH-VLAYETFLITLIRGKQVDEALKFLRV 279
           I+L GW    G+  EA + + EM        +H V++Y + +    +G  +++ LK    
Sbjct: 220 IVLNGWCNVIGSPREAERVWMEMGNV---GVKHDVVSYSSMISCYSKGGSLNKVLKLFDR 276

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
           MK E+  P  K ++  +  L K +  + A  L   M      + PN++ YN++I  LC  
Sbjct: 277 MKKESIEPDRKVYNAVIHALAKASFVSEARNLMKTMEEEK-GMEPNVVTYNSLIKPLCKA 335

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
              +   + FD+M+  G FP   TY+     L   + V E+     +M K   QPT    
Sbjct: 336 RKTEEAKQVFDEMLEKGLFPTIRTYHAFMRILRTGEEVFEL---LAKMRKMGCQPTVDTY 392

Query: 400 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
              I  L    + +  + +WN + E G+ P  +S   ++ GL   G++ +   + +EM  
Sbjct: 393 IMLIRKLCRWRDFDNVLLLWNEMKEKGVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMKE 452

Query: 460 RRILIYEVTMHKLKKAFYNESRSMRDIFDS 489
           + +   E     ++  F  +  + + + DS
Sbjct: 453 KGMRPNENVEDMIQSWFSGKQYAEQRVIDS 482


>gi|357440039|ref|XP_003590297.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479345|gb|AES60548.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 661

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 153/309 (49%), Gaps = 12/309 (3%)

Query: 64  SSDDIESAL----ACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQ--RLSPYAWN 117
           S DDI  +L       GI  + +L++ +L    D   SA+  FRWAG     + S  +++
Sbjct: 65  SEDDILQSLISDEGVNGIHLSENLINRLLFRYKDDWKSALAIFRWAGSHSNFKHSQQSYD 124

Query: 118 LMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           +MVD+LG+    ++M   +  M+++ +++L T A +   + GA ++ +AV  FD +   G
Sbjct: 125 MMVDILGRMKAMDKMREILEEMRQESLITLNTIAKVMRRFVGARQWKDAVRIFDDLQFLG 184

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
           +E++  ++N LL  +C+ E    +A E    +K  + P+  +F IL+ GW     VEEA+
Sbjct: 185 LEKNTESMNVLLDTLCK-EKFVEQAREIYLELKHYIAPNAHTFNILIHGWCNIRRVEEAH 243

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297
            T  EM + +   P  V++Y T +    + +  D     L  M+ +NC P +  ++  + 
Sbjct: 244 WTIQEM-KGYGCRP-CVISYSTIIQCYCQEQNFDRVYDLLDEMQAQNCSPNVVTYTTIMC 301

Query: 298 ILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD-QMVFHG 356
            L K      A+Q+ + M  +G    P+ + +N++I  L     +D+    F   M    
Sbjct: 302 ALAKAEKFEEALQVVERMNAVG--CRPDTLFFNSLIYTLGRAGRIDDATHVFKVAMPKAS 359

Query: 357 AFPDSLTYN 365
             P++ TYN
Sbjct: 360 VAPNTSTYN 368



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 57/140 (40%)

Query: 310 QLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFE 369
           Q  +I + +   + PN   +N +I   CN   V+       +M  +G  P  ++Y+ I +
Sbjct: 207 QAREIYLELKHYIAPNAHTFNILIHGWCNIRRVEEAHWTIQEMKGYGCRPCVISYSTIIQ 266

Query: 370 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
           C  + +    V     EM      P  +   T +  L  A++ E A+++   +   G  P
Sbjct: 267 CYCQEQNFDRVYDLLDEMQAQNCSPNVVTYTTIMCALAKAEKFEEALQVVERMNAVGCRP 326

Query: 430 LEASANELLVGLRNLGRLSD 449
                N L+  L   GR+ D
Sbjct: 327 DTLFFNSLIYTLGRAGRIDD 346


>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 695

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 153/343 (44%), Gaps = 5/343 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           ++ ++D L K+G           + E G+L    T+ S+ D  C  G++ E       M 
Sbjct: 198 YSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMV 257

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
              V+ D    N L+ A+C++              K+   PD  ++  L+EG+    NV 
Sbjct: 258 RENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVH 317

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           EA + F  MV+R    P+ VL Y   +    + K VDEA+   + +  +N  PT+  +++
Sbjct: 318 EARELFNRMVKR-GLEPD-VLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNS 375

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
            +D L      +H  +L D M G      P+++ YN +I  LC    +         M+ 
Sbjct: 376 LIDGLCNSGRISHVKKLLDEMHGSA--QPPDVVTYNILIDALCKEGRILEALGVLVMMMK 433

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 414
            G  P+ +TYN + +       V+  +  F+ M+K+  +P  LN    I      +  + 
Sbjct: 434 KGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDE 493

Query: 415 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           AI ++  +    ++P  AS N L+ GL NLGR+  V+   +EM
Sbjct: 494 AIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEM 536



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 140/321 (43%), Gaps = 14/321 (4%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N+++D L K GR  +    + +M + G    + T+ ++ + YC      EA   F+ 
Sbjct: 266 YTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNR 325

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M   G+E DV+  N L+   C+ +      + F     K + P   S+  L++G    G 
Sbjct: 326 MVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGR 385

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +    K   EM       P  V+ Y   +  L +  ++ EAL  L +M  +   P +  +
Sbjct: 386 ISHVKKLLDEM--HGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTY 443

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  +D     N+   A  +++ MV  G  L P+++ YN +I   C  + VD     F +M
Sbjct: 444 NAMMDGYCLRNNVNVAKDIFNRMVKSG--LEPDILNYNVLINGYCKTEMVDEAIVLFKEM 501

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA--- 409
                 PD  +YN + + L    R+  V++   EM  +   P          +LLDA   
Sbjct: 502 RHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPD----VITYNILLDAFCK 557

Query: 410 DEP-EIAIEIWNYILENGILP 429
            +P + AI ++  I+E GI P
Sbjct: 558 TQPFDKAISLFRQIVE-GIWP 577



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 86/372 (23%), Positives = 151/372 (40%), Gaps = 51/372 (13%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRF-EQMWNAVRVMKEDGVLSLPTFASIFDSYCG 159
           F R   RG       +N+++D   K     E M     +  ++ V ++ ++ S+ D  C 
Sbjct: 323 FNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCN 382

Query: 160 AGKYDEAVMSFDVMSMHGVEQ--DVVAVNSLLSAICRQENQTSRALEFLN----RVKKIV 213
           +G+        D   MHG  Q  DVV  N L+ A+C++     R LE L      +KK V
Sbjct: 383 SGRISHVKKLLD--EMHGSAQPPDVVTYNILIDALCKE----GRILEALGVLVMMMKKGV 436

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
            P+  ++  +++G+    NV  A   F  MV+     P+ +L Y   +    + + VDEA
Sbjct: 437 KPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKS-GLEPD-ILNYNVLINGYCKTEMVDEA 494

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
           +   + M+ +N  P +  +++ +D L  L    H  +L D M   G +  P++I YN ++
Sbjct: 495 IVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQS--PDVITYNILL 552

Query: 334 GLLCNNDDVDNVFRFFDQMV----------------------------------FHGAFP 359
              C     D     F Q+V                                   HG  P
Sbjct: 553 DAFCKTQPFDKAISLFRQIVEGIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSP 612

Query: 360 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 419
           +  TY ++   L K+    E      +M  N+  P  +     I +LL  +E + A ++ 
Sbjct: 613 NVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQRNETDKAEKLR 672

Query: 420 NYILENGILPLE 431
             ++  G++ +E
Sbjct: 673 EEMIARGLVNIE 684



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 86/371 (23%), Positives = 144/371 (38%), Gaps = 41/371 (11%)

Query: 125 KNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGA----GKYDEAVMSFDVMSMHGVEQ 180
           KN RF  + +AV        +  P   S+FD   GA    G Y  A+  F  +   G+  
Sbjct: 29  KNCRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISP 88

Query: 181 DVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKT 239
            +     L++    Q + T+ A   L  + K    P+  +F  ++ G+   G + +A   
Sbjct: 89  SIATFTILINCYFHQ-SHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDF 147

Query: 240 FGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299
              ++ +     +    Y T +  L +  Q+  AL  L+ M+  +  P L  +S  +D L
Sbjct: 148 CQNLLAQGYLFDQ--FTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGL 205

Query: 300 VK-------------------LNDSTHAVQLWDIMVGIGF--------------NLMPNL 326
            K                   L D+     L D    +G               N+ P+ 
Sbjct: 206 CKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDD 265

Query: 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 386
             +N +I  LC    +         M   G  PD +TYN + E     + VHE  + F+ 
Sbjct: 266 YTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNR 325

Query: 387 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 446
           M+K   +P  LN    I         + A+ ++  +    ++P  AS N L+ GL N GR
Sbjct: 326 MVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGR 385

Query: 447 LSDVRRFAEEM 457
           +S V++  +EM
Sbjct: 386 ISHVKKLLDEM 396



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 103/250 (41%), Gaps = 4/250 (1%)

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           NV++A   F  MV  F   P  V  ++  L  ++R      A+     ++ +   P++  
Sbjct: 35  NVDDAVTCFNRMVRVFPPPPTSV--FDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIAT 92

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           F+  ++     + +  A  L   ++  G+   PNL+ +N +I   C N  +     F   
Sbjct: 93  FTILINCYFHQSHTAFAFSLLATILKSGYQ--PNLVTFNTIINGFCINGMIFKALDFCQN 150

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           ++  G   D  TY  +   L KN ++        EM K+  QP  +  +  I  L     
Sbjct: 151 LLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGF 210

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK 471
              A+ + + I E GIL    + N L+ G  ++GR  +V +   +M+   +   + T + 
Sbjct: 211 VSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNI 270

Query: 472 LKKAFYNESR 481
           L  A   E R
Sbjct: 271 LIDALCKEGR 280



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 67/152 (44%), Gaps = 2/152 (1%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAV 167
           GQ      +N+++D   K   F++  +  R + E       T  +I D+ C   K   A 
Sbjct: 540 GQSPDVITYNILLDAFCKTQPFDKAISLFRQIVEGIWPDFYTNHAIVDNLCKGEKLKMAE 599

Query: 168 MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEG 226
            +   + MHG   +V     L++A+C+ +     A+  L++++     PD  +F I++  
Sbjct: 600 DALKHLLMHGCSPNVQTYTILINALCK-DGSFGEAMLLLSKMEDNDRPPDAITFEIIIGV 658

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYE 258
             +    ++A K   EM+ R   N E  L YE
Sbjct: 659 LLQRNETDKAEKLREEMIARGLVNIEKRLMYE 690


>gi|356551783|ref|XP_003544253.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 576

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 166/341 (48%), Gaps = 10/341 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++N+++    K+G  E+   A+RV+   GV  +  T+ ++  S C  GK  +A+      
Sbjct: 151 SYNVLISGYCKSGEIEE---ALRVLDRMGVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQ 207

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
                  DVV    L+ A C+ E+   +A++  N ++ K   PD  ++ +L++G+ K G 
Sbjct: 208 LQSKCYPDVVTCTVLIDATCK-ESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGR 266

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           ++EA + F + +  +   P+ V+++   L +L  G +  +A+K L  M  + C P++  F
Sbjct: 267 LDEAIR-FLKKLPSYGCQPD-VISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTF 324

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  ++ L +      A+ + ++M   G    PN   +N +I   CN   +D    + + M
Sbjct: 325 NILINFLCQKGLLGKALNVLEMMPKHGHT--PNSRSFNPLIQGFCNGKGIDRAIEYLEIM 382

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
           V  G +PD +TYN++   L K+ +V +      ++      P+ ++  T I  LL   + 
Sbjct: 383 VSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKA 442

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 453
           E+A+E+   +   G+ P   +   ++ GL   G++ +  +F
Sbjct: 443 ELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVREAMKF 483



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/359 (22%), Positives = 154/359 (42%), Gaps = 9/359 (2%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
            +++D   K     Q       M+  G    + T+  +   +C  G+ DEA+     +  
Sbjct: 220 TVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRFLKKLPS 279

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEE 235
           +G + DV++ N +L ++C               ++K   P   +F IL+    ++G + +
Sbjct: 280 YGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQKGLLGK 339

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
           A     EM+ +    P +  ++   +     GK +D A+++L +M    C+P +  ++  
Sbjct: 340 ALNVL-EMMPKHGHTP-NSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNIL 397

Query: 296 LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
           L  L K      AV +   +   G +  P+LI YN VI  L      +      ++M + 
Sbjct: 398 LTALCKDGKVDDAVVILSQLSSKGCS--PSLISYNTVIDGLLKVGKAELAVELLEEMCYK 455

Query: 356 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 415
           G  PD +T   +   L +  +V E  KFFH + +   +P      + IT L  + +  +A
Sbjct: 456 GLKPDLITCTSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFIYNSIITGLCKSQQTSLA 515

Query: 416 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR----RILIYEVTMH 470
           I+    ++  G  P EA+   L+ G+   G   D  + + E+ +R    R L+ +V++ 
Sbjct: 516 IDFLADMVAKGCKPTEATYTTLIKGITYEGLAEDASKLSNELYSRGLVKRSLVEKVSLE 574



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 59/299 (19%), Positives = 115/299 (38%), Gaps = 46/299 (15%)

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR--QENQTSRALEFLNRVKKIVDPDGD 218
           G+ +E     + M+  G   DV+A  +L+   C+  +    S+ +  L     ++D    
Sbjct: 93  GELEEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVIDVT-- 150

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           S+ +L+ G+ K G +EEA +    +++R   +P +   Y+  L +L    ++ +A++ L 
Sbjct: 151 SYNVLISGYCKSGEIEEALR----VLDRMGVSP-NAATYDAVLCSLCDRGKLKQAMQVLG 205

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
                 C+P                                     +++    +I   C 
Sbjct: 206 RQLQSKCYP-------------------------------------DVVTCTVLIDATCK 228

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
              V    + F++M   G  PD +TYN++ +   K  R+ E  +F  ++     QP  ++
Sbjct: 229 ESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRFLKKLPSYGCQPDVIS 288

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
               +  L        A+++   +L  G LP   + N L+  L   G L       E M
Sbjct: 289 HNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQKGLLGKALNVLEMM 347



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/280 (20%), Positives = 103/280 (36%), Gaps = 37/280 (13%)

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETF-------LITLIRGKQVDEALKFLRVMKG 282
           +GN++ + +     +   E +P+ V     F       L  LIR  +++E  +FL  M  
Sbjct: 48  KGNLQHSERFSKGALNGVESSPDRVNTSLNFEESEIRHLRRLIRNGELEEGSRFLEYMTN 107

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG-------FNLM------------ 323
           +   P +   +  +    K+  + +A Q+  I+   G       +N++            
Sbjct: 108 KGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVIDVTSYNVLISGYCKSGEIEE 167

Query: 324 -----------PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 372
                      PN   Y+AV+  LC+   +    +   + +    +PD +T  ++ +   
Sbjct: 168 ALRVLDRMGVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQLQSKCYPDVVTCTVLIDATC 227

Query: 373 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 432
           K   V +  K F+EM     +P  +     I         + AI     +   G  P   
Sbjct: 228 KESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRFLKKLPSYGCQPDVI 287

Query: 433 SANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
           S N +L  L + GR  D  +    ML +  L   VT + L
Sbjct: 288 SHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNIL 327


>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like isoform 1 [Vitis vinifera]
          Length = 610

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 158/333 (47%), Gaps = 10/333 (3%)

Query: 127 GRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAV 185
           G+ ++    + ++++ G +  + T+  +   YC +G+ D A+   D M+   V  DVV  
Sbjct: 163 GKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRMN---VAPDVVTY 219

Query: 186 NSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244
           N++L  +C    +  +A+E L+R ++K   PD  ++ IL+E   KE  V +A K   EM 
Sbjct: 220 NTILRTLC-DSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEM- 277

Query: 245 ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 304
            R + +   V+ Y   +  + +  ++DEA+KFL  M    C P +   +  L  +     
Sbjct: 278 -RNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGR 336

Query: 305 STHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTY 364
              A +L   M+  G +  P+++ +N +I  LC    +       ++M  HG  P+SL+Y
Sbjct: 337 WMDAEKLLSDMLRKGCS--PSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSY 394

Query: 365 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 424
           N +     K K++    ++   M+     P  +   T +T L    + ++A+EI N +  
Sbjct: 395 NPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSS 454

Query: 425 NGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
            G  P+  + N ++ GL  +G+     +  +EM
Sbjct: 455 KGCSPVLITYNTVIDGLSKVGKTERAIKLLDEM 487



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/357 (22%), Positives = 153/357 (42%), Gaps = 19/357 (5%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSFD 171
            + ++++   K     Q    +  M+  G  S P   T+  + +  C  G+ DEA+   +
Sbjct: 253 TYTILIEATCKESGVGQAMKLLDEMRNKG--SKPDVVTYNVLINGICKEGRLDEAIKFLN 310

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
            M  +G + +V+  N +L ++C             + ++K   P   +F IL+    ++G
Sbjct: 311 NMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQG 370

Query: 232 NVEEANKTFGEMVERFEWNPEH-----VLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
                    G  ++  E  P H      L+Y   L    + K++D A+++L +M    C+
Sbjct: 371 -------LLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCY 423

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346
           P +  ++  L  L K      AV++ + +   G +  P LI YN VI  L      +   
Sbjct: 424 PDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCS--PVLITYNTVIDGLSKVGKTERAI 481

Query: 347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406
           +  D+M   G  PD +TY+ +   L +  +V E  KFFH++     +P  +   + +  L
Sbjct: 482 KLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGL 541

Query: 407 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
             + + + AI+   Y++     P EA+   L+ G+   G   +      E+ +R ++
Sbjct: 542 CKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGLV 598



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 86/382 (22%), Positives = 165/382 (43%), Gaps = 8/382 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N ++  L  +G+ +Q    + R ++++    + T+  + ++ C      +A+   D M
Sbjct: 218 TYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEM 277

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGN 232
              G + DVV  N L++ IC+ E +   A++FLN +      P+  +  I+L      G 
Sbjct: 278 RNKGSKPDVVTYNVLINGICK-EGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGR 336

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
             +A K   +M+ R   +P  V+ +   +  L R   +  A+  L  M    C P    +
Sbjct: 337 WMDAEKLLSDML-RKGCSPS-VVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSY 394

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  L    K      A++  DIMV  G    P+++ YN ++  LC +  VD      +Q+
Sbjct: 395 NPLLHGFCKEKKMDRAIEYLDIMVSRG--CYPDIVTYNTLLTALCKDGKVDVAVEILNQL 452

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
              G  P  +TYN + + L K  +     K   EM +   +P  +  ++ ++ L    + 
Sbjct: 453 SSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKV 512

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
           + AI+ ++ +   GI P   + N +++GL    +      F   M+++R    E T   L
Sbjct: 513 DEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTIL 572

Query: 473 KKAFYNESRSMRDIFDSLERRC 494
            +    E  + ++  D L   C
Sbjct: 573 IEGIAYEGLA-KEALDLLNELC 593


>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
          Length = 553

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 158/333 (47%), Gaps = 10/333 (3%)

Query: 127 GRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAV 185
           G+ ++    + ++++ G +  + T+  +   YC +G+ D A+   D M+   V  DVV  
Sbjct: 106 GKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRMN---VAPDVVTY 162

Query: 186 NSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244
           N++L  +C    +  +A+E L+R ++K   PD  ++ IL+E   KE  V +A K   EM 
Sbjct: 163 NTILRTLC-DSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEM- 220

Query: 245 ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 304
            R + +   V+ Y   +  + +  ++DEA+KFL  M    C P +   +  L  +     
Sbjct: 221 -RNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGR 279

Query: 305 STHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTY 364
              A +L   M+  G +  P+++ +N +I  LC    +       ++M  HG  P+SL+Y
Sbjct: 280 WMDAEKLLSDMLRKGCS--PSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSY 337

Query: 365 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 424
           N +     K K++    ++   M+     P  +   T +T L    + ++A+EI N +  
Sbjct: 338 NPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSS 397

Query: 425 NGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
            G  P+  + N ++ GL  +G+     +  +EM
Sbjct: 398 KGCSPVLITYNTVIDGLSKVGKTERAIKLLDEM 430



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/357 (22%), Positives = 153/357 (42%), Gaps = 19/357 (5%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSFD 171
            + ++++   K     Q    +  M+  G  S P   T+  + +  C  G+ DEA+   +
Sbjct: 196 TYTILIEATCKESGVGQAMKLLDEMRNKG--SKPDVVTYNVLINGICKEGRLDEAIKFLN 253

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
            M  +G + +V+  N +L ++C             + ++K   P   +F IL+    ++G
Sbjct: 254 NMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQG 313

Query: 232 NVEEANKTFGEMVERFEWNPEH-----VLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
                    G  ++  E  P H      L+Y   L    + K++D A+++L +M    C+
Sbjct: 314 -------LLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCY 366

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346
           P +  ++  L  L K      AV++ + +   G +  P LI YN VI  L      +   
Sbjct: 367 PDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCS--PVLITYNTVIDGLSKVGKTERAI 424

Query: 347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406
           +  D+M   G  PD +TY+ +   L +  +V E  KFFH++     +P  +   + +  L
Sbjct: 425 KLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGL 484

Query: 407 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
             + + + AI+   Y++     P EA+   L+ G+   G   +      E+ +R ++
Sbjct: 485 CKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGLV 541



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 86/382 (22%), Positives = 165/382 (43%), Gaps = 8/382 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N ++  L  +G+ +Q    + R ++++    + T+  + ++ C      +A+   D M
Sbjct: 161 TYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEM 220

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGN 232
              G + DVV  N L++ IC+ E +   A++FLN +      P+  +  I+L      G 
Sbjct: 221 RNKGSKPDVVTYNVLINGICK-EGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGR 279

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
             +A K   +M+ R   +P  V+ +   +  L R   +  A+  L  M    C P    +
Sbjct: 280 WMDAEKLLSDML-RKGCSPS-VVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSY 337

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  L    K      A++  DIMV  G    P+++ YN ++  LC +  VD      +Q+
Sbjct: 338 NPLLHGFCKEKKMDRAIEYLDIMVSRG--CYPDIVTYNTLLTALCKDGKVDVAVEILNQL 395

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
              G  P  +TYN + + L K  +     K   EM +   +P  +  ++ ++ L    + 
Sbjct: 396 SSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKV 455

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
           + AI+ ++ +   GI P   + N +++GL    +      F   M+++R    E T   L
Sbjct: 456 DEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTIL 515

Query: 473 KKAFYNESRSMRDIFDSLERRC 494
            +    E  + ++  D L   C
Sbjct: 516 IEGIAYEGLA-KEALDLLNELC 536


>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1043

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 161/350 (46%), Gaps = 9/350 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           A+N ++D LGK G  +      + MK+ G++ +L T+  +      AG+  EA   F  +
Sbjct: 394 AYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDL 453

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G   DV   N+L+  + +   Q  + L     +K++V+  G+           EG +
Sbjct: 454 KEQGAVPDVFTYNTLIDVLGKG-GQMDKVLAI---IKEMVEKGGECIISRDSNAGHEGTI 509

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           E A++T       F+   E  + Y T +   I    VDEA+K L VMK   C PT+  ++
Sbjct: 510 EGADRTVEYPSLGFKSLGE--ITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYT 567

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +D L K      AV L   M   G    P+++ Y++++      D  +     FD+MV
Sbjct: 568 TLVDGLGKAGRLDEAVSLLREMEKQGCE--PSVVTYSSLMASFYKRDQEEESLSLFDEMV 625

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G   D  TY+++  CL K+  V +    F  M +   +P   N  T ++ L+  ++ +
Sbjct: 626 RKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKID 685

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
            A++I+N + E+ ++P     N ++ GL    R+ +  +  + M N+ IL
Sbjct: 686 FALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNIL 735



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 148/317 (46%), Gaps = 5/317 (1%)

Query: 114  YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
            + +N+MV+ L K+ R ++    V  MK   +L  L T+ S+ D    +G+ +EA   F  
Sbjct: 704  FVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTK 763

Query: 173  MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
            M+  G E DVVA  SL+  + +    +   + F    KK   PD  +++ L++   KEG 
Sbjct: 764  MTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGR 823

Query: 233  VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
            VEEA   F   + +    P +V  Y + + +  +   VD AL+    M+   C P +  +
Sbjct: 824  VEEAYYFFENSISK-GCTP-NVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTY 881

Query: 293  SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
            +N L  L K      A +L + M  +G   +P+L+ YN +I  +     VD    +F +M
Sbjct: 882  NNLLSGLAKAGRLNVAEKLLEEMEKVG--CVPDLVTYNILIDGVGKMGMVDEAESYFKRM 939

Query: 353  VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
               G  PD +T+  + E L K  ++ E  + F  M +  + P+ +     I +L  A + 
Sbjct: 940  KEKGIVPDVITFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVLIDILGRAGKV 999

Query: 413  EIAIEIWNYILENGILP 429
              A  I++ +   G +P
Sbjct: 1000 HEAAMIFHEMKVKGCMP 1016



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 162/371 (43%), Gaps = 23/371 (6%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N+M+ VLGK GR  + W     +KE G +  + T+ ++ D     G+ D+ +     M
Sbjct: 429 TYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEM 488

Query: 174 SMHGVEQDV-----VAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
              G E  +           +    R     S   + L  +         ++  L+  + 
Sbjct: 489 VEKGGECIISRDSNAGHEGTIEGADRTVEYPSLGFKSLGEI---------TYNTLMSAFI 539

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
             G+V+EA K   E++++ E  P  V+ Y T +  L +  ++DEA+  LR M+ + C P+
Sbjct: 540 HNGHVDEAVKLL-EVMKKHECIPT-VVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPS 597

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
           +  +S+ +    K +    ++ L+D MV  G   + ++  Y+ VI  LC +DDVD     
Sbjct: 598 VVTYSSLMASFYKRDQEEESLSLFDEMVRKG--CVADVSTYSLVINCLCKSDDVDQALDV 655

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
           F +M   G  P    Y  +   L+K++++    + F+E+ ++   P        +  L+ 
Sbjct: 656 FGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVK 715

Query: 409 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV----RRFAEEMLNRRILI 464
           ++  + A ++ + +    ILP   +   LL GL   GRL +      +  EE     ++ 
Sbjct: 716 SNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVA 775

Query: 465 YEVTMHKLKKA 475
           Y   M  L K 
Sbjct: 776 YTSLMDVLGKG 786



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 134/285 (47%), Gaps = 8/285 (2%)

Query: 101  FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSYCG 159
            F +    G      A+  ++DVLGK G+        R M K+  V  + T++S+ DS   
Sbjct: 761  FTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGK 820

Query: 160  AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGD 218
             G+ +EA   F+     G   +V   +SL+ +  ++     RALE    + ++   P+  
Sbjct: 821  EGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKK-GMVDRALELFEEMQRRQCPPNIV 879

Query: 219  SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
            ++  LL G  K G +  A K   EM E+    P+ ++ Y   +  + +   VDEA  + +
Sbjct: 880  TYNNLLSGLAKAGRLNVAEKLLEEM-EKVGCVPD-LVTYNILIDGVGKMGMVDEAESYFK 937

Query: 279  VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
             MK +   P +  F++ ++ L K++    A +L+D M   G+N  P+++ YN +I +L  
Sbjct: 938  RMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSMEEEGYN--PSVVTYNVLIDILGR 995

Query: 339  NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECL-IKNKRVHEVEK 382
               V      F +M   G  PD +T  ++   L ++ ++ H +E+
Sbjct: 996  AGKVHEAAMIFHEMKVKGCMPDGITIGIMKRILSVREQQFHALEE 1040



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 100/471 (21%), Positives = 192/471 (40%), Gaps = 51/471 (10%)

Query: 69  ESALACT--------GIIP---TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWN 117
           E+ +AC         G++P   T +++  VL  +   P +   F     +G     + +N
Sbjct: 407 EADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYN 466

Query: 118 LMVDVLGKNGRFEQMWNAVRVMKEDG--------------------------------VL 145
            ++DVLGK G+ +++   ++ M E G                                 L
Sbjct: 467 TLIDVLGKGGQMDKVLAIIKEMVEKGGECIISRDSNAGHEGTIEGADRTVEYPSLGFKSL 526

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
              T+ ++  ++   G  DEAV   +VM  H     VV   +L+  + +   +   A+  
Sbjct: 527 GEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKA-GRLDEAVSL 585

Query: 206 LNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L  + K+  +P   +++ L+  + K    EE+   F EMV +       V  Y   +  L
Sbjct: 586 LREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRK--GCVADVSTYSLVINCL 643

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
            +   VD+AL     MK E   P L  +   L  LVK      A+Q+++ +     +L+P
Sbjct: 644 CKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQE--SSLVP 701

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           +  +YN ++  L  ++ VD   +  D M      PD  TY  + + L K+ R+ E    F
Sbjct: 702 DTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMF 761

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
            +M +   +P  +   + + +L    +   A+ I+  + +   +P   + + L+  L   
Sbjct: 762 TKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKE 821

Query: 445 GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMR--DIFDSLERR 493
           GR+ +   F E  +++           L  +F  +    R  ++F+ ++RR
Sbjct: 822 GRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRR 872



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 87/395 (22%), Positives = 170/395 (43%), Gaps = 38/395 (9%)

Query: 115  AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSL-PTFASIFDSYCGAGKYDEAVMSFDVM 173
             ++L+++ L K+   +Q  +    MKE+G+  L   + ++  S     K D A+  F+ +
Sbjct: 635  TYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNEL 694

Query: 174  SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
                +  D    N +++ + +  N+   A + ++ +K + + PD  ++  LL+G  K G 
Sbjct: 695  QESSLVPDTFVYNIMVNGLVKS-NRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGR 753

Query: 233  VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
            +EEA   F +M E  E +   V+AY + +  L +G ++  AL   R M  + C P +  +
Sbjct: 754  LEEAFNMFTKMTE--EGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTY 811

Query: 293  SNALDILVKLNDSTHAVQLWDIMVGIG---------------------------FNLM-- 323
            S+ +D L K      A   ++  +  G                           F  M  
Sbjct: 812  SSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQR 871

Query: 324  ----PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
                PN++ YN ++  L     ++   +  ++M   G  PD +TYN++ + + K   V E
Sbjct: 872  RQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDE 931

Query: 380  VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 439
             E +F  M +    P  +   + I  L   D+   A E+++ + E G  P   + N L+ 
Sbjct: 932  AESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVLID 991

Query: 440  GLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKK 474
             L   G++ +      EM  +  +   +T+  +K+
Sbjct: 992  ILGRAGKVHEAAMIFHEMKVKGCMPDGITIGIMKR 1026



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 74/329 (22%), Positives = 134/329 (40%), Gaps = 7/329 (2%)

Query: 101 FFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSY 157
           FF WAG+  G   +   + LM+  L      + +   +  M KE   +S+    S+  ++
Sbjct: 168 FFTWAGQQDGYSHTVGTYTLMIKRLAGAQETDAVVQILTAMWKEGHRISMHLLTSLLRTF 227

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG 217
                   A+  F+ M   G        N +L  + +     S  + F    +  + PD 
Sbjct: 228 GSTNNVSGALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDA 287

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            +F I +  + + G ++ A +   EM+ +   +P  V  +   +  L++   +DEA KF 
Sbjct: 288 QTFRIFVHSFNRSGRLDPAAEPIQEMI-KSGIDP-GVHTFTVLIDALVKSGNIDEACKFF 345

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337
             MK   C P +  ++  ++ L K      A +++  M     N  P+ I YN +I  L 
Sbjct: 346 NGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKE--NNCSPDAIAYNTLIDGLG 403

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
              + D     F +M   G  P+  TYN++   L K  R  E  + FH++ +    P   
Sbjct: 404 KAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVF 463

Query: 398 NCATAITMLLDADEPEIAIEIWNYILENG 426
              T I +L    + +  + I   ++E G
Sbjct: 464 TYNTLIDVLGKGGQMDKVLAIIKEMVEKG 492



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 70/316 (22%), Positives = 130/316 (41%), Gaps = 6/316 (1%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           ++ T+  +     GA + D  V     M   G    +  + SLL       N  S ALE 
Sbjct: 181 TVGTYTLMIKRLAGAQETDAVVQILTAMWKEGHRISMHLLTSLLRTF-GSTNNVSGALEI 239

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
            N++K    +P  + +  +LE   K G    A   FG++  +F   P+    +  F+ + 
Sbjct: 240 FNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKL-GQFRIQPD-AQTFRIFVHSF 297

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
            R  ++D A + ++ M      P +  F+  +D LVK  +   A + ++ M  +     P
Sbjct: 298 NRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNL--RCSP 355

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           N++ Y  ++  L     ++     F +M  +   PD++ YN + + L K          F
Sbjct: 356 NVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLF 415

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
            EM      P        I++L  A     A ++++ + E G +P   + N L+  L   
Sbjct: 416 KEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKG 475

Query: 445 GRLSDVRRFAEEMLNR 460
           G++  V    +EM+ +
Sbjct: 476 GQMDKVLAIIKEMVEK 491



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 96/235 (40%), Gaps = 11/235 (4%)

Query: 249 WNPEHVLAYETFLITLIRG----KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 304
           W   H ++    L +L+R       V  AL+    MK   C P+   ++  L++LVK   
Sbjct: 209 WKEGHRISMH-LLTSLLRTFGSTNNVSGALEIFNQMKSFGCNPSTNMYNFVLELLVKGGF 267

Query: 305 STHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTY 364
              AV ++  +    F + P+   +   +     +  +D       +M+  G  P   T+
Sbjct: 268 YHSAVIVFGKLGQ--FRIQPDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTF 325

Query: 365 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 424
            ++ + L+K+  + E  KFF+ M      P  +   T +  L  A   E A E++  + E
Sbjct: 326 TVLIDALVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKE 385

Query: 425 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL----IYEVTMHKLKKA 475
           N   P   + N L+ GL   G         +EM +R ++     Y + +  L KA
Sbjct: 386 NNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKA 440


>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
 gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
          Length = 814

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 166/372 (44%), Gaps = 10/372 (2%)

Query: 91  SYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SL 147
           S     +A+ FFRWAG   G +   + +N ++++L     + Q +     M + G+  + 
Sbjct: 95  SLKVTGTAISFFRWAGEQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNT 154

Query: 148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN 207
            +F  +  S+    + D+AV  F++M     + D+     L+  +C+      +A E  +
Sbjct: 155 FSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKA-GMDEKAFEVFH 213

Query: 208 RVKKI--VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
            +  +  V PD      ++    K   V+EA + FG+M E+  + P+  +AY T +  L 
Sbjct: 214 EMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQM-EKCGFPPD-AIAYNTMIDGLA 271

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN 325
           +     EALK L  M  + C PT   +   ++ L K      A +L+ +M   GF   PN
Sbjct: 272 KAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFR--PN 329

Query: 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 385
            ++Y ++I     +  +      FD+MV  G  PD +T+ ++ + L K+    +  K F 
Sbjct: 330 SVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFE 389

Query: 386 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
           EM++   +P  +   T I  L        A  I   ++ +G  P   +   LL G   LG
Sbjct: 390 EMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLG 449

Query: 446 RLSDVRRFAEEM 457
           RL +  +  +E+
Sbjct: 450 RLDEAAQLLDEL 461



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 132/296 (44%), Gaps = 7/296 (2%)

Query: 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR-QENQTSRALEFLNRV 209
            SI    C  G+ DEA   F  M   G + D    N L++ +CR +EN+  RA   L+ +
Sbjct: 510 CSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDL 569

Query: 210 KKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           +K+   PD  ++  L  G  K G V+ A K   E   R  WN + V+AY      L    
Sbjct: 570 EKVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSR-GWNAD-VVAYTALCTGLCYQG 627

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           QVD A+   + M  +   P    +   ++ L+K+     A + +D M+G G    P +  
Sbjct: 628 QVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQK--PTVAT 685

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS-LTYNMIFECLIKNKRVHEVEKFFHEM 387
           Y A++  LC+  +VD  F  F+ M+  G    S + Y+ +     K  +V    K F +M
Sbjct: 686 YTALVQALCHAGNVDEAFHRFESMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDM 745

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
           I     PT +  A+    L+ + + E A E+   +   G  P  A+   +L GLR 
Sbjct: 746 ISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTAILDGLRK 801



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 96/395 (24%), Positives = 161/395 (40%), Gaps = 37/395 (9%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS---LP---TFASIFDSYCGAGKYDEAVMS 169
           +  ++  L K GR   + NA R+MK  G+++    P   T+  + D +C  G+ DEA   
Sbjct: 403 YTTIIQGLSKIGR---VANAFRIMK--GMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQL 457

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQ---ENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
            D +       ++   +SL++ +C     E       E      + +DP G   +I++ G
Sbjct: 458 LDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAAAETLDP-GLCCSIIV-G 515

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ--VDEALKFLRVMKGEN 284
             K G ++EA + F  MV   E        Y   +  L R ++  V+ A   L  ++   
Sbjct: 516 LCKTGRLDEACRIFQRMVS--EGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVG 573

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
             P    ++     L K+ +   AV++ +     G+N   +++ Y A+   LC    VD 
Sbjct: 574 YLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWN--ADVVAYTALCTGLCYQGQVDR 631

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
               F +MV  G  PD+  Y  I   LIK K++ +  KFF EMI    +PT       + 
Sbjct: 632 AVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQ 691

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLV-GLRNLGRLSDVRRFAEEMLNRRIL 463
            L  A   + A   +  +L  G L       + L+ G     ++    +  E+M++R  +
Sbjct: 692 ALCHAGNVDEAFHRFESMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNV 751

Query: 464 IYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQ 498
              VT   L              FD L R  KT +
Sbjct: 752 PTAVTSASL--------------FDGLVRSGKTEK 772


>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
 gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
          Length = 814

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 166/372 (44%), Gaps = 10/372 (2%)

Query: 91  SYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SL 147
           S     +A+ FFRWAG   G +   + +N ++++L     + Q +     M + G+  + 
Sbjct: 95  SLKVTGTAISFFRWAGEQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNT 154

Query: 148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN 207
            +F  +  S+    + D+AV  F++M     + D+     L+  +C+      +A E  +
Sbjct: 155 FSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKA-GMDEKAFEVFH 213

Query: 208 RVKKI--VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
            +  +  V PD      ++    K   V+EA + FG+M E+  + P+  +AY T +  L 
Sbjct: 214 EMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQM-EKCGFPPD-AIAYNTMIDGLA 271

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN 325
           +     EALK L  M  + C PT   +   ++ L K      A +L+ +M   GF   PN
Sbjct: 272 KAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFR--PN 329

Query: 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 385
            ++Y ++I     +  +      FD+MV  G  PD +T+ ++ + L K+    +  K F 
Sbjct: 330 SVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFE 389

Query: 386 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
           EM++   +P  +   T I  L        A  I   ++ +G  P   +   LL G   LG
Sbjct: 390 EMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLG 449

Query: 446 RLSDVRRFAEEM 457
           RL +  +  +E+
Sbjct: 450 RLDEAAQLLDEL 461



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 130/296 (43%), Gaps = 7/296 (2%)

Query: 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR-QENQTSRALEFLNRV 209
            SI    C  G+ DEA   F  M   G + D    N L++ +CR +EN+  RA   L+ +
Sbjct: 510 CSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDL 569

Query: 210 KKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           + +   PD  ++  L  G  K G V+ A K   E   R  WN + V+AY      L    
Sbjct: 570 EMVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSR-GWNAD-VVAYTALCTGLCYQG 627

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           QVD A+   + M  +   P    +   ++ L+K      A + +D M+G G    P +  
Sbjct: 628 QVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQK--PTVAT 685

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS-LTYNMIFECLIKNKRVHEVEKFFHEM 387
           Y A++  LC+  +VD  F  F+ M+  G    S + Y+ +     K  +V    K F +M
Sbjct: 686 YTALVQALCHAGNVDEAFHRFEGMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDM 745

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
           I     PT +  A+    L+ + + E A E+   +   G  P  A+   +L GLR 
Sbjct: 746 ISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTAILDGLRK 801



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 97/395 (24%), Positives = 161/395 (40%), Gaps = 37/395 (9%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS---LP---TFASIFDSYCGAGKYDEAVMS 169
           +  ++  L K GR   + NA R+MK  G+++    P   T+  + D +C  G+ DEA   
Sbjct: 403 YTTIIQGLSKIGR---VANAFRIMK--GMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQL 457

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQ---ENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
            D +       ++   +SL+  +C     EN      E      + +DP G   +I++ G
Sbjct: 458 LDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLFEQSKAAAENLDP-GLCCSIIV-G 515

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ--VDEALKFLRVMKGEN 284
             K G ++EA + F  MV   E        Y   +  L R ++  V+ A   L  ++   
Sbjct: 516 LCKTGRLDEACRIFQRMVS--EGCKPDATTYNILINGLCRSRENRVERAFALLHDLEMVG 573

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
             P    ++     L K+ +   AV++ +     G+N   +++ Y A+   LC    VD 
Sbjct: 574 YLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWN--ADVVAYTALCTGLCYQGQVDR 631

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
               F +MV  G  PD+  Y  I   LIK K++ +  KFF EMI    +PT       + 
Sbjct: 632 AVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQ 691

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLV-GLRNLGRLSDVRRFAEEMLNRRIL 463
            L  A   + A   +  +L  G L       + L+ G     ++    +  E+M++R  +
Sbjct: 692 ALCHAGNVDEAFHRFEGMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNV 751

Query: 464 IYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQ 498
              VT   L              FD L R  KT +
Sbjct: 752 PTAVTSASL--------------FDGLVRSGKTEK 772


>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 164/357 (45%), Gaps = 10/357 (2%)

Query: 127 GRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAV 185
           G+  +    + V++  G +  + T+  +   YC AG+ + A+   D MS   V  DVV  
Sbjct: 151 GKTRKAAKILEVLEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMS---VSPDVVTY 207

Query: 186 NSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244
           N++L ++C    +  +A+E L+R +++   PD  ++ IL+E   ++  V +A K   EM 
Sbjct: 208 NTILRSLC-DSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMR 266

Query: 245 ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 304
           +R    P+ V+ Y   +  + +  ++DEA+KFL  M    C P +   +  L  +     
Sbjct: 267 DR-GCTPD-VVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGR 324

Query: 305 STHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTY 364
              A +L   M+  GF+  P+++ +N +I  LC    +       ++M  HG  P+SL+Y
Sbjct: 325 WMDAEKLLADMLRKGFS--PSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSY 382

Query: 365 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 424
           N +     K K++    ++   M+     P  +   T +T L    + E A+EI N +  
Sbjct: 383 NPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSS 442

Query: 425 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
            G  P+  + N ++ GL   G+     +  +EM  + +    +T   L      E +
Sbjct: 443 KGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGK 499



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 87/384 (22%), Positives = 159/384 (41%), Gaps = 38/384 (9%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N ++  L  +G+ +Q    + R+++ D    + T+  + ++ C      +A+   D M
Sbjct: 206 TYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEM 265

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGN 232
              G   DVV  N L++ IC+ E +   A++FLN +      P+  +  I+L      G 
Sbjct: 266 RDRGCTPDVVTYNVLVNGICK-EGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGR 324

Query: 233 VEEANKTFGEMVER----------------------------FEWNPEH-----VLAYET 259
             +A K   +M+ +                             E  P+H      L+Y  
Sbjct: 325 WMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNP 384

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG 319
            L    + K++D A+++L  M    C+P +  ++  L  L K      AV++ + +   G
Sbjct: 385 LLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKG 444

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
            +  P LI YN VI  L          +  D+M      PD++TY+ +   L +  +V E
Sbjct: 445 CS--PVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDE 502

Query: 380 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 439
             KFFHE  +   +P  +   + +  L    + + AI+   Y++  G  P E S   L+ 
Sbjct: 503 AIKFFHEFERMGVRPNAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPTETSYTILIE 562

Query: 440 GLRNLGRLSDVRRFAEEMLNRRIL 463
           GL   G   +      E+ N+ ++
Sbjct: 563 GLAYEGMAKEALELLNELCNKGLM 586


>gi|115474441|ref|NP_001060817.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|42408384|dbj|BAD09535.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113622786|dbj|BAF22731.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|125601950|gb|EAZ41275.1| hypothetical protein OsJ_25782 [Oryza sativa Japonica Group]
          Length = 798

 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 165/364 (45%), Gaps = 11/364 (3%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++  +++ L + G+ ++ +     M + G+  +  T+  +   YC +GK  EA+  F  M
Sbjct: 208 SYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKM 267

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              GVE DVV  N+L+  +C+          F + VKK   PD   +  LL G+  EG +
Sbjct: 268 CRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYL 327

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            + ++    MV R    P+H + +   +    +   VDEA+     M+ +   P +  + 
Sbjct: 328 VQMHQLLDVMV-RNGTQPDHYI-FNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYG 385

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +D L ++     A+  +D ++  G  L PN +++  +I  LC  D  D       +M+
Sbjct: 386 TVMDALCRVGKVDDAMSQFDRLISEG--LTPNGVVFRTLIHGLCACDKWDKAEELAVEMI 443

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI-TMLLDADEP 412
             G  P+++ +N +   L K   V   +  F  M++ + Q   +   T I    LD    
Sbjct: 444 GRGICPNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVD 503

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV----RRFAEEMLNRRILIYEVT 468
           E A ++   ++ +G+ P E + N ++ G    GR+ D     R+ A + +N  I+IY   
Sbjct: 504 E-ATKLLEGMVLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTI 562

Query: 469 MHKL 472
           +H L
Sbjct: 563 LHGL 566



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 65/323 (20%), Positives = 134/323 (41%), Gaps = 40/323 (12%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G +   Y +N+++    K+G  ++   A   M++ G+  ++ T+ ++ D+ C  GK D+A
Sbjct: 341 GTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALCRVGKVDDA 400

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICR-------------------------------- 194
           +  FD +   G+  + V   +L+  +C                                 
Sbjct: 401 MSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGICPNTIFFNTLLNH 460

Query: 195 --QENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
             +E   +RA    + + ++ V  D  ++  L++G+  +G V+EA K    MV   +   
Sbjct: 461 LCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVDEATKLLEGMV--LDGVK 518

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
            + + Y T +    +  ++++A    R M  +   P +  +S  L  L +      A +L
Sbjct: 519 PNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTILHGLFQTRRIAAAKEL 578

Query: 312 WDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECL 371
           +  M+  G  L   +  YN ++  LC N+  D+  R F  +        + T+N++ + L
Sbjct: 579 YLWMIKCGIKL--PIGTYNIILQGLCQNNCTDDALRMFHNLCLIDFHLQNRTFNIMIDAL 636

Query: 372 IKNKRVHEVEKFFHEMIKNEWQP 394
           +K  R  E +  F  ++     P
Sbjct: 637 LKGGRHDEAKDLFASLLARGLVP 659



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 119/277 (42%), Gaps = 10/277 (3%)

Query: 185 VNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244
           +NS LSA+ R+    + AL   NR+ +    D  +++I++    + G+++ A    G ++
Sbjct: 69  LNSALSAVARES--PAVALSLFNRMPR---ADLCTYSIVIGCCSRAGHLDLAFAALGRVI 123

Query: 245 ERFEWNPEHVLAYETFLITLIRGKQVDEALKF-LRVMKGENCFPTLKFFSNALDILVKLN 303
            R  W  +  + +   L  L   K+  +A+   LR M    C P    ++  L  L   N
Sbjct: 124 -RTGWTAQ-AITFSPLLKGLCHDKRTSDAMDIALRRMPALGCTPNAFSYNILLKGLCDEN 181

Query: 304 DSTHAVQLWDIMVG--IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS 361
            S  A+ L   M+         P+++ Y  VI  L     +D  +  FD+M+  G  P+ 
Sbjct: 182 RSQQALHLLHTMMADDTRGGCPPDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNC 241

Query: 362 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 421
           +TYN +      + +  E    F +M ++  +P  +   T +  L        A ++++ 
Sbjct: 242 ITYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDS 301

Query: 422 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
           +++ G  P  +    LL G    G L  + +  + M+
Sbjct: 302 MVKKGHKPDSSIYGTLLHGYATEGYLVQMHQLLDVMV 338



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 98/225 (43%), Gaps = 5/225 (2%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSYCGAGKYD 164
           GRG   +   +N +++ L K G   +  N   +M + D    + T+ ++ D YC  GK D
Sbjct: 444 GRGICPNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVD 503

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
           EA    + M + GV+ + V  N++++  C+          F     K V+P    ++ +L
Sbjct: 504 EATKLLEGMVLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTIL 563

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G  +   +  A + +  M++     P  +  Y   L  L +    D+AL+    +   +
Sbjct: 564 HGLFQTRRIAAAKELYLWMIKCGIKLP--IGTYNIILQGLCQNNCTDDALRMFHNLCLID 621

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY 329
                + F+  +D L+K      A  L+  ++  G  L+PN++ Y
Sbjct: 622 FHLQNRTFNIMIDALLKGGRHDEAKDLFASLLARG--LVPNVVTY 664


>gi|15232517|ref|NP_188138.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273407|sp|Q9LIL5.1|PP233_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15200
 gi|11994509|dbj|BAB02574.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642110|gb|AEE75631.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 104/430 (24%), Positives = 202/430 (46%), Gaps = 16/430 (3%)

Query: 39  RFPTHLDAPYISSSARIICEILAH---ASSDDIESALACTGIIPTPDLVHEVLQLSYD-- 93
           +FP   +      SA  +  I+ H   +S + I+  L   GI  T +LV EV+  +    
Sbjct: 64  KFPNRFNDDKDKQSALDVHNIIKHHRGSSPEKIKRILDKCGIDLTEELVLEVVNRNRSDW 123

Query: 94  SPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFAS 152
            P+  +            S   +N ++DVLGK  RFE+       M K DG ++  T+  
Sbjct: 124 KPAYILSQLVVKQSVHLSSSMLYNEILDVLGKMRRFEEFHQVFDEMSKRDGFVNEKTYEV 183

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI 212
           + + Y  A K DEAV  F+     G++ D+VA + LL  +CR ++       F +R ++ 
Sbjct: 184 LLNRYAAAHKVDEAVGVFERRKEFGIDDDLVAFHGLLMWLCRYKHVEFAETLFCSRRREF 243

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
              D  +  ++L GW   GNV EA + + +++   +  P+ V++Y T +  L +  ++ +
Sbjct: 244 -GCDIKAMNMILNGWCVLGNVHEAKRFWKDIIAS-KCRPD-VVSYGTMINALTKKGKLGK 300

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAV 332
           A++  R M      P +K  +N +D L        A++++  +   G +  PN++ YN++
Sbjct: 301 AMELYRAMWDTRRNPDVKICNNVIDALCFKKRIPEALEVFREISEKGPD--PNVVTYNSL 358

Query: 333 IGLLCNNDDVDNVFRFFDQMVFHGA--FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 390
           +  LC     + V+   ++M   G    P+ +T++ +   L  ++R  +V+     M KN
Sbjct: 359 LKHLCKIRRTEKVWELVEEMELKGGSCSPNDVTFSYL---LKYSQRSKDVDIVLERMAKN 415

Query: 391 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 450
           + + T         + +  D+ E   EIW+ +  +G+ P + +    + GL   G++ + 
Sbjct: 416 KCEMTSDLYNLMFRLYVQWDKEEKVREIWSEMERSGLGPDQRTYTIRIHGLHTKGKIGEA 475

Query: 451 RRFAEEMLNR 460
             + +EM+++
Sbjct: 476 LSYFQEMMSK 485


>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
 gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 162/353 (45%), Gaps = 11/353 (3%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP----TFASIFDSYCGAGKYDEAVMS 169
           Y+ N++++ L    R   +  AV VM +   L +     TF ++ +  C  GK  EAV  
Sbjct: 132 YSLNVLINCLC---RLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGL 188

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK 229
           F+ M   G E +V++ N++++ +C+  N       F    +    P+  ++  +++   K
Sbjct: 189 FNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCK 248

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
           +  V EA +   EMV+R    P  V+ Y T L       Q++EA +  + M G N  P  
Sbjct: 249 DRLVNEAVEFLSEMVDR--GIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDT 306

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
             F+  +D L K    + A  + + M   G    PN   YNA++   C ++ +D   +  
Sbjct: 307 VTFNILVDGLCKEGMVSEARCVSETMTEKGAE--PNAYTYNALMDGYCLHNQMDEAIKVL 364

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 409
             M+  G  P+  +YN++     K+KR++E ++   EM +    P  +  +T +  L   
Sbjct: 365 GIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQV 424

Query: 410 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
             P  A+ ++  +  +G+LP   + + LL G    G L +  +  +EM  RRI
Sbjct: 425 GRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRI 477



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 98/366 (26%), Positives = 161/366 (43%), Gaps = 14/366 (3%)

Query: 98  AVDFFR---WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED-GVLSLPTFASI 153
           AV  F    W+G    +  Y  N +++ L KNG         R M+++ G  ++ T+ +I
Sbjct: 185 AVGLFNEMVWSGHEPNVISY--NTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTI 242

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR--QENQTSRALEFLNRVKK 211
            DS C     +EAV     M   G+  DVV  N++L   C   Q N+ +R   F   V +
Sbjct: 243 IDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRL--FKEMVGR 300

Query: 212 IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD 271
            V PD  +F IL++G  KEG V EA      M E+      +   Y   +       Q+D
Sbjct: 301 NVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEK--GAEPNAYTYNALMDGYCLHNQMD 358

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA 331
           EA+K L +M G+ C P L  ++  ++   K      A +L   M     NL P+ + Y+ 
Sbjct: 359 EAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEK--NLTPDTVTYST 416

Query: 332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
           ++  LC           F +M   G  PD + Y+++ +   K+  + E  K   EM +  
Sbjct: 417 LMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERR 476

Query: 392 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 451
            +P  +     I  +  A + E+A E+++ +  +GI P   + N ++ GL   G   +  
Sbjct: 477 IKPNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAY 536

Query: 452 RFAEEM 457
            F  +M
Sbjct: 537 EFFRKM 542



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 121/260 (46%), Gaps = 11/260 (4%)

Query: 232 NVEEANKTFGEMVERFEWNPE-HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           ++++A  +F  MV     NP   V+ +  FL ++ + KQ   A+     M        + 
Sbjct: 76  SIDDALTSFYRMVR---MNPRPSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVY 132

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
             +  ++ L +L+    AV +   M  +G  + P+ I +N +I  LCN   +      F+
Sbjct: 133 SLNVLINCLCRLSHVDFAVSVMGKMFKLG--IQPDAITFNTLINGLCNEGKIKEAVGLFN 190

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
           +MV+ G  P+ ++YN +   L KN       + F +M +N  +P  +   T I  L    
Sbjct: 191 EMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDR 250

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 470
               A+E  + +++ GI P   + N +L G  +LG+L++  R  +EM+ R ++   VT +
Sbjct: 251 LVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFN 310

Query: 471 KL-----KKAFYNESRSMRD 485
            L     K+   +E+R + +
Sbjct: 311 ILVDGLCKEGMVSEARCVSE 330



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 122/268 (45%), Gaps = 13/268 (4%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G   + Y +N ++D    + + ++    + +M   G   +L ++  + + YC + + +E
Sbjct: 335 KGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNE 394

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD----PDGDSFA 221
           A      MS   +  D V  ++L+  +C    Q  R  E LN  K++      PD  +++
Sbjct: 395 AKRLLSEMSEKNLTPDTVTYSTLMQGLC----QVGRPREALNLFKEMCSSGLLPDLMAYS 450

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           ILL+G+ K G+++EA K   EM ER    P +++ Y   +  +    +++ A +    + 
Sbjct: 451 ILLDGFCKHGHLDEALKLLKEMHER-RIKP-NIILYTILIRGMFIAGKLEVAKELFSKLS 508

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
            +   P +  ++  +  L+K   S  A + +  M   GF  +P+   YN +I     N D
Sbjct: 509 ADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGF--LPDSCSYNVIIQGFLQNQD 566

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFE 369
                +  D+MV      DS T+ M+ +
Sbjct: 567 SSTAIQLIDEMVGKRFSADSSTFQMLLD 594


>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
 gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
          Length = 436

 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 156/348 (44%), Gaps = 5/348 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           A++ +++ L K  R E+    +  M         T+  I +  C   + D+A+ + + M+
Sbjct: 82  AYSTIINWLCKLNRVEEARELIEKMARYAPPDALTYGPIVERLCKTKRIDDALATVEEMA 141

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G++ D    N +LS +C++E      L F   VK+ ++P+  ++  L+ G  K   +E
Sbjct: 142 TRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIE 201

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
            A + F EM  +  + P  V +Y T +    + K +  A      M   NC P +  ++ 
Sbjct: 202 TAYELFKEMAGK-GYVPTEV-SYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTT 259

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
            +D L K      A ++ D MV  G  + PN+  Y+ +I   C    VD   +  +QMV 
Sbjct: 260 LIDGLSKSGKVQAAAEVLDGMVKKG--VTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVT 317

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 414
            G  P  +TYN++   L +  ++ +  K F  M +    PT +   T +  L    + + 
Sbjct: 318 QGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDG 377

Query: 415 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM-LNRR 461
           A  ++  ++  G  P   + + L  GL   G++ + +   E+M L +R
Sbjct: 378 AHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKMKLTKR 425



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 91/390 (23%), Positives = 163/390 (41%), Gaps = 43/390 (11%)

Query: 109 QRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDE 165
           +R+ P A  +N + D   K GR EQ+    + M E G  L    +  +    C  G +DE
Sbjct: 4   RRVIPGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDE 63

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA---- 221
           A      M +   ++  +A +++++ +C+  N+   A E + ++ +   PD  ++     
Sbjct: 64  AYKLLHTMRLKRFKRKAIAYSTIINWLCKL-NRVEEARELIEKMARYAPPDALTYGPIVE 122

Query: 222 -------------------------------ILLEGWEKEGNVEEANKTFGEMVERFEWN 250
                                           +L G  +E  VEEA   F +MV++   N
Sbjct: 123 RLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQ-RIN 181

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P +V+ Y T +  L +  +++ A +  + M G+   PT   ++  +D   K  D   A  
Sbjct: 182 P-NVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKD 240

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
           ++D MV    N +PN++ Y  +I  L  +  V       D MV  G  P+  TY+ + + 
Sbjct: 241 VFDKMVR--SNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDG 298

Query: 371 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 430
             K +RV E  K   +M+     PT +     +  L  AD+ E A +++  + +    P 
Sbjct: 299 FCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPT 358

Query: 431 EASANELLVGLRNLGRLSDVRRFAEEMLNR 460
             + N LL  L +  +L    R   EM+ +
Sbjct: 359 VVTYNTLLRALCHHKQLDGAHRLYAEMIAK 388



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 107/282 (37%), Gaps = 42/282 (14%)

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
           V P   +F  + +G+ K G +E+  + +  MVE           Y   +  L +    DE
Sbjct: 6   VIPGAATFNTVADGFAKAGRLEQVKEVYQGMVE--AGYTLRASGYGILISCLCKVGNFDE 63

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAV 332
           A K L  M+       LK F                                  I Y+ +
Sbjct: 64  AYKLLHTMR-------LKRFKR------------------------------KAIAYSTI 86

Query: 333 IGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 392
           I  LC  + V+      ++M  + A PD+LTY  I E L K KR+ +      EM     
Sbjct: 87  INWLCKLNRVEEARELIEKMARY-APPDALTYGPIVERLCKTKRIDDALATVEEMATRGI 145

Query: 393 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 452
           +P        ++ L   ++ E A  ++  +++  I P   + N L+ GL    R+     
Sbjct: 146 KPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYE 205

Query: 453 FAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLER 492
             +EM  +  +  EV+ + L   F  +    + +D+FD + R
Sbjct: 206 LFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVR 247


>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
 gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
          Length = 614

 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 92/382 (24%), Positives = 169/382 (44%), Gaps = 16/382 (4%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKY 163
           R + L P  +  ++++D L K  R        R M+  G+++    + ++        + 
Sbjct: 36  RSKNLVPNVFLCSILIDGLCKAKRSIDALRCFRAMQGSGIVADTVIYTALLSGLWKEKRL 95

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAI 222
           D+A+     M  HG E +VV  NSL+  +C+  N+  RA E    +K +   P   ++  
Sbjct: 96  DQALAILHEMRDHGCEPNVVTYNSLIDGLCKN-NEPDRAQELFEHMKSVECSPSMVTYNT 154

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPE-----HVLAYETFLITLIRGKQVDEALKFL 277
           LL+G  + G +E A   F EM++R   + +     +V+ Y   +  L +  +V +A++ L
Sbjct: 155 LLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELL 214

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337
             MK   C P +  ++  +D L K +    A ++   M+  G   +PNL+ YN+++  LC
Sbjct: 215 ESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAG--CVPNLVTYNSLLHGLC 272

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
               V +       M   G  P+ +TY  + + L K  RV +      +MI     P  +
Sbjct: 273 RARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLM 332

Query: 398 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
                I  L  AD+ + +I +    +  GI P   + + ++ GL    RL +  R    +
Sbjct: 333 IYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYV 392

Query: 458 LNRR----ILIYEVTMHKLKKA 475
            +R     +++Y   +  L KA
Sbjct: 393 KSRGCPPDVILYSTLIDGLCKA 414



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 89/391 (22%), Positives = 168/391 (42%), Gaps = 15/391 (3%)

Query: 96  SSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASI 153
           S AV+       RG       + ++VD L K  +    W  +R M + G + +L T+ S+
Sbjct: 208 SQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSL 267

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV 213
               C A +  +A+     M+  G   +VV   +L+  +C+            + + K  
Sbjct: 268 LHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGG 327

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
            PD   + +L+ G  K   V+E+       V      P+ V+ Y + +  L R  ++DEA
Sbjct: 328 TPDLMIYNMLINGLCKADQVDESIALLRRAVS-GGIKPD-VVTYSSVIYGLCRSNRLDEA 385

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
            + L  +K   C P +  +S  +D L K      A  L+++M G G +   +++ Y+ +I
Sbjct: 386 CRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCD--ADVVTYSTLI 443

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
             LC    VD       +MV  G  P ++TYN + + L     + E  +   EM ++   
Sbjct: 444 DGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCA 503

Query: 394 PTPLNCATAITMLLDADEPEIAIEIWNY----ILENGILPLEASA-NELLVGLRNLGRLS 448
           P+ +     I  +   +  + A+ +        +  G   L+  A + L+ GL   GR++
Sbjct: 504 PSAVTYNILIHGMCRMERVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVA 563

Query: 449 DVRRFAEEMLNRRI----LIYEVTMHKLKKA 475
           +   + +EM++  +    + Y + +  LKK+
Sbjct: 564 EALDYFQEMIDNGVIPDHITYSILLEGLKKS 594



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 159/352 (45%), Gaps = 14/352 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKE-DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM- 173
           +N ++D L KN   ++       MK  +   S+ T+ ++ D     GK + A+  F  M 
Sbjct: 117 YNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEML 176

Query: 174 --SMHGVEQ----DVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEG 226
               H ++     +V+  + L+  +C+  N+ S+A+E L  +K +   PD  ++ IL++G
Sbjct: 177 DRRSHDMDDRCSPNVITYSVLIDGLCKA-NRVSQAVELLESMKARGCSPDVITYTILVDG 235

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
             KE  V  A +   EM++       +++ Y + L  L R ++V +AL  +R M    C 
Sbjct: 236 LCKESKVAAAWEVLREMLD--AGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCT 293

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346
           P +  +   +D L K+     A  +   M+  G    P+L++YN +I  LC  D VD   
Sbjct: 294 PNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGT--PDLMIYNMLINGLCKADQVDESI 351

Query: 347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406
               + V  G  PD +TY+ +   L ++ R+ E  +    +      P  +  +T I  L
Sbjct: 352 ALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGL 411

Query: 407 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
             A + + A +++  +  +G      + + L+ GL   GR+ +       M+
Sbjct: 412 CKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMV 463



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 155/357 (43%), Gaps = 9/357 (2%)

Query: 110 RLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           R SP    +++++D L K  R  Q    +  MK  G    + T+  + D  C   K   A
Sbjct: 186 RCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAA 245

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLE 225
                 M   G   ++V  NSLL  +CR   + S AL  +  +  +   P+  ++  L++
Sbjct: 246 WEVLREMLDAGCVPNLVTYNSLLHGLCRAR-RVSDALALMRDMTCRGCTPNVVTYGTLID 304

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G  K G V++A     +M+++    P+ ++ Y   +  L +  QVDE++  LR       
Sbjct: 305 GLCKVGRVKDACAMLADMIDK-GGTPD-LMIYNMLINGLCKADQVDESIALLRRAVSGGI 362

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P +  +S+ +  L + N    A +L   +   G    P++I+Y+ +I  LC    VD  
Sbjct: 363 KPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCP--PDVILYSTLIDGLCKAGKVDEA 420

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
           F  ++ M   G   D +TY+ + + L K  RV E       M++    P+ +   + I  
Sbjct: 421 FDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKG 480

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
           L D +  + AIE+   +  +   P   + N L+ G+  + R+       E+   R +
Sbjct: 481 LCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAVVLLEQAKARCV 537



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/336 (22%), Positives = 141/336 (41%), Gaps = 11/336 (3%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+A++   +C  G+ D+A   FD M    +  +V   + L+  +C+ +        F   
Sbjct: 11  TYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALRCFRAM 70

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
               +  D   +  LL G  KE  +++A     EM  R      +V+ Y + +  L +  
Sbjct: 71  QGSGIVADTVIYTALLSGLWKEKRLDQALAILHEM--RDHGCEPNVVTYNSLIDGLCKNN 128

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLM----- 323
           + D A +    MK   C P++  ++  LD L +      A+ L+  M+    + M     
Sbjct: 129 EPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCS 188

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           PN+I Y+ +I  LC  + V       + M   G  PD +TY ++ + L K  +V    + 
Sbjct: 189 PNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEV 248

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
             EM+     P  +   + +  L  A     A+ +   +   G  P   +   L+ GL  
Sbjct: 249 LREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCK 308

Query: 444 LGRLSDVRRFAEEMLNRR----ILIYEVTMHKLKKA 475
           +GR+ D      +M+++     ++IY + ++ L KA
Sbjct: 309 VGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKA 344



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 133/285 (46%), Gaps = 11/285 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N++++ L K  + ++    +R     G+   + T++S+    C + + DEA      + 
Sbjct: 334 YNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVK 393

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNV 233
             G   DV+  ++L+  +C+   +   A +    +     D D  +++ L++G  K G V
Sbjct: 394 SRGCPPDVILYSTLIDGLCKA-GKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRV 452

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           +EA+     MV      P   + Y + +  L     +DEA++ +  M+  NC P+   ++
Sbjct: 453 DEAHLLLARMVRM--GTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYN 510

Query: 294 NALDILVKLNDSTHAVQLWDI----MVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
             +  + ++     AV L +      V  G   + + I Y+++I  LC    V     +F
Sbjct: 511 ILIHGMCRMERVDSAVVLLEQAKARCVAAGGTAL-DTIAYSSLIDGLCKAGRVAEALDYF 569

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF-FHEMIKNEWQ 393
            +M+ +G  PD +TY+++ E L K+K +HE+      +M++  ++
Sbjct: 570 QEMIDNGVIPDHITYSILLEGLKKSKDLHELRHLVLDQMVQLGYR 614



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 94/220 (42%), Gaps = 15/220 (6%)

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
           C P +  ++  L    +  +   A + +D M     NL+PN+ + + +I  LC      +
Sbjct: 5   CQPDVYTYAALLRGFCRGGEIDQAQRCFDEMRS--KNLVPNVFLCSILIDGLCKAKRSID 62

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
             R F  M   G   D++ Y  +   L K KR+ +     HEM  +  +P  +   + I 
Sbjct: 63  ALRCFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLID 122

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR--- 461
            L   +EP+ A E++ ++      P   + N LL GL   G+L       +EML+RR   
Sbjct: 123 GLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHD 182

Query: 462 --------ILIYEVTMHKLKKAFYNESRSMRDIFDSLERR 493
                   ++ Y V +  L KA  N      ++ +S++ R
Sbjct: 183 MDDRCSPNVITYSVLIDGLCKA--NRVSQAVELLESMKAR 220


>gi|297739257|emb|CBI28908.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 100/409 (24%), Positives = 173/409 (42%), Gaps = 42/409 (10%)

Query: 86  EVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV- 144
           +VL LS D       F  +  +G  ++ +A N ++   G  G  E++    R MKE G+ 
Sbjct: 163 DVLSLSSDFDRVRCIFGEFKEKGFLMTVFAANSLIRSFGALGMVEELLWVWRRMKESGIE 222

Query: 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204
            SL TF  + +    +   + A   F+VM    +  DVV+ N+++   C+  N T +A+E
Sbjct: 223 PSLYTFNFLLNGLVNSMFIESAERVFEVMECGKIGPDVVSYNTMIKGYCKAGN-TKKAME 281

Query: 205 -FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT 263
            F +  K+ ++PD  ++  L++    EGN +     + EM ER    P H  AY   +  
Sbjct: 282 KFTDMEKRNLEPDKITYLTLIQACYSEGNFDSCLHLYQEMEERGLEIPPH--AYSLVIGG 339

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLM 323
           L +  +  E       M  + C   +  ++  +D   K  +   A+ L++ M G GF   
Sbjct: 340 LCKDGRTVEGSSVFENMNKKGCKANVAIYTALIDAYGKNGNVNEAINLFERMKGEGFE-- 397

Query: 324 PNLIMYNAVIGLLCNN-----------------------------------DDVDNVFRF 348
           P+ + Y  ++  LC +                                     VD   +F
Sbjct: 398 PDDVTYGVIVNGLCKSGRLDEAVEYFEFCKDNEVAVNAMFYSSLIDGLGKAGRVDEAEKF 457

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
           F++MV  G   DS  YN + + L K+ ++ E    F  M K     T       I+ L  
Sbjct: 458 FEEMVERGCPQDSYCYNALIDALAKSGKMEEALVLFKRMEKEGCDQTVYTYTILISGLFK 517

Query: 409 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
               E A+++W+ +++ GI P  AS   L VGL   G+++   +  +E+
Sbjct: 518 EHRNEEALKLWDLMIDKGITPTTASFRALSVGLCLSGKVARACKILDEL 566


>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
 gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
          Length = 737

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 83/364 (22%), Positives = 168/364 (46%), Gaps = 8/364 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
           +N ++  L  NGR +      R M+ +   S+ T+  + D+ C + +  +A +  + M  
Sbjct: 205 YNTIIKGLCDNGRVDSALVHYRDMQRNCAPSVITYTILVDALCKSARISDASLILEDMIE 264

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEE 235
            G   +VV  N+L++  C+  N     + F   ++    PD  ++ IL++G+ K+   ++
Sbjct: 265 AGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQD 324

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
             K   EMV ++   P + + Y T + +L++  +  +A    ++M   +C P+   F+  
Sbjct: 325 GAKLLQEMV-KYGCEP-NFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLM 382

Query: 296 LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
           +D+  K+     A +L+ +M   G   +P++  YN +I   C  + +D+  +  ++M   
Sbjct: 383 IDMFCKVGQLDLAYELFQLMTDRG--CLPDIYTYNIMISGACRANRIDDARQLLERMTEA 440

Query: 356 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 415
           G  PD +TYN I   L K  +V E  + +  +    +    + C+T I  L  +   + A
Sbjct: 441 GCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDA 500

Query: 416 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR----RILIYEVTMHK 471
            ++   +  NG  P   +   L+ G     +L     F  EML++     ++ Y + + K
Sbjct: 501 EKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDK 560

Query: 472 LKKA 475
           L K+
Sbjct: 561 LCKS 564



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 152/348 (43%), Gaps = 22/348 (6%)

Query: 82  DLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE 141
           DL +E+ QL  D             RG     Y +N+M+    +  R +     +  M E
Sbjct: 393 DLAYELFQLMTD-------------RGCLPDIYTYNIMISGACRANRIDDARQLLERMTE 439

Query: 142 DGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC--RQENQ 198
            G    + T+ SI    C A + DEA   ++V+   G   DVV  ++L+  +C  R+ + 
Sbjct: 440 AGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDD 499

Query: 199 TSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYE 258
             + L  + R      PD  ++ IL+ G+ K   ++++   F EM+++       V+ Y 
Sbjct: 500 AEKLLREMERNGSA--PDVVAYTILIHGFCKADQLDKSLAFFSEMLDK--GCVPTVITYS 555

Query: 259 TFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI 318
             +  L +  +V +    L+ M      P    +++ +D L K +    A +L+ +M   
Sbjct: 556 IVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQT 615

Query: 319 GFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVH 378
           G    P ++ YN ++  LC    +D      + M   G  PD++TYN +F+   K+    
Sbjct: 616 G--CAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHD 673

Query: 379 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 426
           +  + F  M      PTP   +  +T L+  ++ + A+EIW   LE G
Sbjct: 674 KAFRLFQAMKSRGCSPTPFMYSLLLTKLVAEEKMDQAMEIWEEALEAG 721



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 100/475 (21%), Positives = 187/475 (39%), Gaps = 71/475 (14%)

Query: 76  GIIPTPDLVHEVLQLSYDSP--SSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMW 133
           GI+P   + + +++   D+    SA+  +R   R    S   + ++VD L K+ R     
Sbjct: 197 GIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRNCAPSVITYTILVDALCKSARISDAS 256

Query: 134 NAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI 192
             +  M E G   ++ T+ ++ + +C  G  DEAV+ F+ M  +    DV   N L+   
Sbjct: 257 LILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGY 316

Query: 193 CRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
           C+QE     A      VK   +P+  ++  L++   K G   +A     +M+ R +  P 
Sbjct: 317 CKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAF-NLAQMMLRRDCKPS 375

Query: 253 HV----------------LAYETFLITLIRG------------------KQVDEALKFLR 278
           H                 LAYE F +   RG                   ++D+A + L 
Sbjct: 376 HFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLE 435

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL---------------- 322
            M    C P +  +++ +  L K +    A ++++++   G+ L                
Sbjct: 436 RMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSR 495

Query: 323 -----------------MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYN 365
                             P+++ Y  +I   C  D +D    FF +M+  G  P  +TY+
Sbjct: 496 RLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYS 555

Query: 366 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 425
           ++ + L K+ RV +       M++    P  +   + I  L  +D  + A E++  + + 
Sbjct: 556 IVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQT 615

Query: 426 GILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 480
           G  P   + N L+  L  + RL +     E M +   L   VT + +   F+  +
Sbjct: 616 GCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSA 670



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 94/460 (20%), Positives = 181/460 (39%), Gaps = 57/460 (12%)

Query: 64  SSDDIESA---LACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA-GR-GQRLSPYAWNL 118
           SS+D E A   L   G    P +V  VLQ   D    AV FF W  G+ G + S +  N 
Sbjct: 79  SSEDFELASRRLCEFGGYLVPSVVGRVLQ-QLDDLDKAVKFFDWCTGQPGYKHSKFTCNC 137

Query: 119 MVDVLGKNGRFEQMWNAVR-----VMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++    +  + ++ ++  +     +   D +    T++++ + +C A  + +A    D M
Sbjct: 138 LLSAFVRKKKAQEAYDLFKNHRCGLCSPDSI----TYSTLINGFCKARDFQQAYRLLDEM 193

Query: 174 SMHGV----------------------------------EQDVVAVNSLLSAICRQENQT 199
              G+                                     V+    L+ A+C+    +
Sbjct: 194 EKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRNCAPSVITYTILVDALCKSARIS 253

Query: 200 SRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYET 259
             +L   + ++    P+  ++  L+ G+ K GN++EA   F +M+E    +P+ V  Y  
Sbjct: 254 DASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLEN-SCSPD-VFTYNI 311

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG 319
            +    + ++  +  K L+ M    C P    ++  +D LVK      A  L  +M  + 
Sbjct: 312 LIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMM--LR 369

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
            +  P+   +N +I + C    +D  +  F  M   G  PD  TYN++     +  R+ +
Sbjct: 370 RDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDD 429

Query: 380 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 439
             +    M +    P  +   + ++ L  A + + A E++  +   G      + + L+ 
Sbjct: 430 ARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLID 489

Query: 440 GLRNLGRLSDVRRFAEEMLNR----RILIYEVTMHKLKKA 475
           GL    RL D  +   EM        ++ Y + +H   KA
Sbjct: 490 GLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKA 529



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 82/363 (22%), Positives = 159/363 (43%), Gaps = 11/363 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++D L K+G++   +N  ++M + D   S  TF  + D +C  G+ D A   F +M+
Sbjct: 344 YNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMT 403

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNV 233
             G   D+   N ++S  CR  N+   A + L R+ +    PD  ++  ++ G  K   V
Sbjct: 404 DRGCLPDIYTYNIMISGACRA-NRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQV 462

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           +EA + + E++    +  + V+   T +  L + +++D+A K LR M+     P +  ++
Sbjct: 463 DEAYEVY-EVLRNGGYFLD-VVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYT 520

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +    K +    ++  +  M+  G   +P +I Y+ VI  LC +  V +       M+
Sbjct: 521 ILIHGFCKADQLDKSLAFFSEMLDKG--CVPTVITYSIVIDKLCKSARVRDGCMLLKTML 578

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G  PD++ Y  + + L K+    E  + +  M +    PT +     +  L      +
Sbjct: 579 ERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLD 638

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVTM 469
            AI +   +  +G LP   + N +  G           R  + M +R       +Y + +
Sbjct: 639 EAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRGCSPTPFMYSLLL 698

Query: 470 HKL 472
            KL
Sbjct: 699 TKL 701



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 86/212 (40%), Gaps = 38/212 (17%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +++++D L K+ R       ++ M E GV      + S+ D  C +  YDEA   + +M 
Sbjct: 554 YSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMK 613

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G    VV  N L+  +C+     SR  E ++               LLE  E +G + 
Sbjct: 614 QTGCAPTVVTYNVLVDKLCK----VSRLDEAIH---------------LLEVMESDGCLP 654

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           +   T+  + + F  + EH                 D+A +  + MK   C PT   +S 
Sbjct: 655 D-TVTYNSVFDGFWKSAEH-----------------DKAFRLFQAMKSRGCSPTPFMYSL 696

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNL 326
            L  LV       A+++W+  +  G ++ P +
Sbjct: 697 LLTKLVAEEKMDQAMEIWEEALEAGADVDPEI 728


>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Vitis vinifera]
          Length = 746

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 90/379 (23%), Positives = 177/379 (46%), Gaps = 7/379 (1%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G +++ Y  N+M++ L KN + E   + +  M+E GV   + T+ ++ ++YC  G  +EA
Sbjct: 249 GVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEA 308

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLE 225
               D MS  G++  V   N++++ +C+   +  RA   L+ + KI + PD  ++ ILL 
Sbjct: 309 FELMDSMSGKGLKPCVFTYNAIINGLCKT-GKYLRAKGVLDEMLKIGMSPDTATYNILLV 367

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
              +  N+ +A + F EM    +     ++++   +  L +   +D+ALK+ R MK    
Sbjct: 368 ECCRNDNMMDAERIFDEMPS--QGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGL 425

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P    ++  +    +    + A+++ D M+  G  L  +++ YN ++  LC    +   
Sbjct: 426 APDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVL--DVVTYNTILNGLCKEKMLSEA 483

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
              F +M   G FPD  T+  +     K+  +++    F  MI+   +P  +   T I  
Sbjct: 484 DELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDG 543

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 465
                E E   E+WN ++   I P   S   L+ G  N+G +S+  R  +EM+ +     
Sbjct: 544 FCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEAT 603

Query: 466 EVTMHKLKKAFYNESRSMR 484
            +T + + K +     +++
Sbjct: 604 IITCNTIVKGYCRAGNAVK 622



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 148/347 (42%), Gaps = 5/347 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIF-DSYCGAGKYDEAVMSFDVM 173
           +++ ++ +L KNG  +Q     R MK  G+       +I    +C  G   EA+   D M
Sbjct: 396 SFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEM 455

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G   DVV  N++L+ +C+++  +     F    ++ V PD  +F  L+ G+ K+GN+
Sbjct: 456 LEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNM 515

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            +A   F  M++R    P+ V+ Y T +    +G ++++  +    M     +P    + 
Sbjct: 516 NKAVTLFEMMIQR-NLKPD-VVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYG 573

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             ++    +   + A +LWD MV  GF     +I  N ++   C   +      F   M+
Sbjct: 574 ILINGYCNMGCVSEAFRLWDEMVEKGFE--ATIITCNTIVKGYCRAGNAVKADEFLSNML 631

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G  PD +TYN +    IK + +       ++M  +   P  +     +         +
Sbjct: 632 LKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQ 691

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
            A  I   ++E G+ P  ++   L+ G      L +  R  +EML R
Sbjct: 692 EAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQR 738



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 86/379 (22%), Positives = 169/379 (44%), Gaps = 7/379 (1%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           +G+G +   + +N +++ L K G++ +    +  M + G+     T+  +    C     
Sbjct: 316 SGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNM 375

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAI 222
            +A   FD M   GV  D+V+ ++L+  + +      +AL++   +K   + PD   + I
Sbjct: 376 MDAERIFDEMPSQGVVPDLVSFSALIGLLSKN-GCLDQALKYFRDMKNAGLAPDNVIYTI 434

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+ G+ + G + EA K   EM+E  +     V+ Y T L  L + K + EA +    M  
Sbjct: 435 LIGGFCRNGVMSEALKVRDEMLE--QGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTE 492

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
              FP    F+  ++   K  +   AV L+++M  I  NL P+++ YN +I   C   ++
Sbjct: 493 RGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMM--IQRNLKPDVVTYNTLIDGFCKGSEM 550

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
           + V   ++ M+    +P+ ++Y ++         V E  + + EM++  ++ T + C T 
Sbjct: 551 EKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTI 610

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
           +     A     A E  + +L  GI+P   + N L+ G      +        +M N  +
Sbjct: 611 VKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGL 670

Query: 463 LIYEVTMHKLKKAFYNESR 481
           L   +T + +   F  + R
Sbjct: 671 LPDVITYNVILNGFSRQGR 689



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/290 (21%), Positives = 117/290 (40%), Gaps = 40/290 (13%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G  L    +N +++ L K     +       M E GV     TF ++ + Y   G  ++
Sbjct: 458 QGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNK 517

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILL 224
           AV  F++M    ++ DVV  N+L+   C+  ++  +  E  N  + + + P+  S+ IL+
Sbjct: 518 AVTLFEMMIQRNLKPDVVTYNTLIDGFCKG-SEMEKVNELWNDMISRRIYPNHISYGILI 576

Query: 225 EGWEKEGNVEEANKTFGEMVER-FEWN--------------------------------- 250
            G+   G V EA + + EMVE+ FE                                   
Sbjct: 577 NGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIV 636

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P+ +  Y T +   I+ + +D A   +  M+     P +  ++  L+   +      A  
Sbjct: 637 PDGI-TYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAEL 695

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPD 360
           +   M+  G N  P+   Y ++I      +++   FR  D+M+  G  PD
Sbjct: 696 IMLKMIERGVN--PDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPD 743


>gi|356560394|ref|XP_003548477.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Glycine max]
          Length = 612

 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 109/432 (25%), Positives = 189/432 (43%), Gaps = 21/432 (4%)

Query: 43  HLDAPYISSSARIICEILAHASS--DDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVD 100
           HL    ++   + I  I+    S    I+  L    I+ +P+LV EVL  + +   +A  
Sbjct: 118 HLRDDGLAKDVKTILAIMHEVGSGPSQIKQKLEHCSIVLSPELVVEVLSRTRNDWEAAFT 177

Query: 101 FFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED----GVLSLPTFASIF 154
           FF WAG+  G   S   ++ M+ +LGK  +F+  WN +  M+       +++  T   + 
Sbjct: 178 FFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEEMRGGRNGLSLVTPQTLLIMI 237

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN-QTSRALEFLNRVKKIV 213
             YC       A+ +F           +   +SLLSA+CR +N Q +  L F N  K + 
Sbjct: 238 RKYCAVHDVARAINTFYAYKRFNFRVGLEEFHSLLSALCRYKNVQDAEYLLFCN--KDVF 295

Query: 214 DPDGDSFAILLEGW-EKEGNVEEANKTFGEMVERFEWNPEH-VLAYETFLITLIRGKQVD 271
             D  SF I+L GW     +   A + + EM++R     +H V++Y + +    +  ++ 
Sbjct: 296 PLDTKSFNIILNGWCNLIVSTSHAERIWHEMIKR---RIQHDVVSYGSIISCYSKSSKLY 352

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA 331
           + L+    MK     P  K ++  +  L K      AV L   M G   ++ P+++ YN+
Sbjct: 353 KVLRMFDEMKKRKITPDRKVYNAVIYALAKGRLVKEAVNLIGTMEGN--DVTPDVVTYNS 410

Query: 332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
           +I  LC    VD   + FD+M+     P   T++  F  L   + V E+     +M +  
Sbjct: 411 LIKPLCKAHKVDEAKQLFDEMLKRHLSPTIQTFHAFFRILRTKEEVFEL---LDKMKELR 467

Query: 392 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 451
             PT       I       + +   +IW+ + E+ I    +S   L+ GL   G+L + +
Sbjct: 468 CYPTIETYIMLIRKFCRWCQLDDVFKIWDAMREDEISHDRSSYIVLIHGLFLNGKLEEAQ 527

Query: 452 RFAEEMLNRRIL 463
           R+  EM  +  L
Sbjct: 528 RYYAEMQEKGFL 539



 Score = 43.9 bits (102), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 68/359 (18%), Positives = 140/359 (38%), Gaps = 54/359 (15%)

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA 236
           G+ +DV  + +++  +    +Q  + LE  + V   + P+     +++E   +  N  EA
Sbjct: 123 GLAKDVKTILAIMHEVGSGPSQIKQKLEHCSIV---LSPE-----LVVEVLSRTRNDWEA 174

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG----------ENCF 286
             TF     +       V  Y + +  L + ++ D A   +  M+G          +   
Sbjct: 175 AFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEEMRGGRNGLSLVTPQTLL 234

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG--FNLMPNLIMYNAVIG----LLCNND 340
             ++ +    D+   +N + +A + ++  VG+    +L+  L  Y  V      L CN D
Sbjct: 235 IMIRKYCAVHDVARAIN-TFYAYKRFNFRVGLEEFHSLLSALCRYKNVQDAEYLLFCNKD 293

Query: 341 ---------------------DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
                                   +  R + +M+      D ++Y  I  C  K+ ++++
Sbjct: 294 VFPLDTKSFNIILNGWCNLIVSTSHAERIWHEMIKRRIQHDVVSYGSIISCYSKSSKLYK 353

Query: 380 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 439
           V + F EM K +  P        I  L      + A+ +   +  N + P   + N L+ 
Sbjct: 354 VLRMFDEMKKRKITPDRKVYNAVIYALAKGRLVKEAVNLIGTMEGNDVTPDVVTYNSLIK 413

Query: 440 GLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLER----RC 494
            L    ++ + ++  +EML R +     T H    AF+   R+  ++F+ L++    RC
Sbjct: 414 PLCKAHKVDEAKQLFDEMLKRHLSPTIQTFH----AFFRILRTKEEVFELLDKMKELRC 468


>gi|449494638|ref|XP_004159605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49730-like [Cucumis sativus]
          Length = 664

 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 108/453 (23%), Positives = 183/453 (40%), Gaps = 13/453 (2%)

Query: 19  SSSSTTTSPTSHNP-HRPTRPRFPTH-LDAPYISSSARIICEILA--HASSDDIESALAC 74
           +S + TT      P H  T P    H  DA   S     +  IL   H     +E AL  
Sbjct: 64  TSPNGTTQRGGFGPIHLKTTPHESAHDRDADEFSVDVEKVYRILRKFHTRVPKLELALQE 123

Query: 75  TGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQM 132
           +G+I    L   VL    D+ +    FF WA +  G R S   +  M+  LGK  +F  +
Sbjct: 124 SGVIMRSGLPERVLSRCGDAGNLGYRFFVWASKQPGYRHSYEVYKAMIKTLGKMRQFGAV 183

Query: 133 WNAVRVMKEDG--VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS 190
           W  +  M+++   +L+   F  +   +       +AV   D M  +G E D      LL 
Sbjct: 184 WALIEEMRKENPYMLTPEVFIVLMRRFASVRMVKKAVEVLDEMPKYGCEPDEYVFGCLLD 243

Query: 191 AICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
           A+C+       A      ++   +P+   F  LL GW +EG + EA     ++ E   + 
Sbjct: 244 ALCKN-GSVKEAASLFEDMRVRFNPNLRHFTSLLYGWCREGKIMEAKHVLVQIKEA-GFE 301

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P+ ++ Y   L    +  ++ +A   L  MK  NC P    F+  +    K      A++
Sbjct: 302 PD-IVVYNNLLGGYAQAGKMRDAFDLLAEMKKVNCGPNAASFTILIQSFCKTEKMDEAMR 360

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
           ++  M G G     +++ Y  +I   C   + D  +   D M+  G  P  L+Y  I   
Sbjct: 361 IFTEMQGSGCE--ADVVTYTTLISGFCKWGNTDKAYEILDDMIQKGHDPSQLSYLCIMMA 418

Query: 371 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 430
             K + + E  +   EM K    P      T I ++    + + A+ +W  +   G+ P 
Sbjct: 419 HEKKEELEECMELIEEMRKIGCVPDLNIYNTMIRLVCKLGDLKEAVRLWGEMQAGGLNPG 478

Query: 431 EASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
             +   ++ G  + G L +   + +EM+ R +L
Sbjct: 479 LDTYILMVHGFLSQGCLVEACDYFKEMVERGLL 511



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 88/374 (23%), Positives = 161/374 (43%), Gaps = 14/374 (3%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           Y +  ++D L KNG  ++  +    M+     +L  F S+   +C  GK  EA      +
Sbjct: 236 YVFGCLLDALCKNGSVKEAASLFEDMRVRFNPNLRHFTSLLYGWCREGKIMEAKHVLVQI 295

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGN 232
              G E D+V  N+LL     Q  +   A + L  +KK+   P+  SF IL++ + K   
Sbjct: 296 KEAGFEPDIVVYNNLLGGYA-QAGKMRDAFDLLAEMKKVNCGPNAASFTILIQSFCKTEK 354

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           ++EA + F EM  +       V+ Y T +    +    D+A + L  M  +   P+   +
Sbjct: 355 MDEAMRIFTEM--QGSGCEADVVTYTTLISGFCKWGNTDKAYEILDDMIQKGHDPSQLSY 412

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
              +    K  +    ++L + M  IG   +P+L +YN +I L+C   D+    R + +M
Sbjct: 413 LCIMMAHEKKEELEECMELIEEMRKIG--CVPDLNIYNTMIRLVCKLGDLKEAVRLWGEM 470

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL--NCATAITMLLDAD 410
              G  P   TY ++    +    + E   +F EM++      P           LL A+
Sbjct: 471 QAGGLNPGLDTYILMVHGFLSQGCLVEACDYFKEMVERGLLSAPQYGTLKELTNALLRAE 530

Query: 411 EPEIAIEIWNYILENGILPLEASANELLV-GLRNLGRLSDVRRFAEEMLNRRIL----IY 465
           + E+A  +W+ +   G   L  SA  + +  L + G + +   +  +M++  ++     +
Sbjct: 531 KLEMAKNMWSCMTTKGC-ELNVSAWTIWIHALFSNGHVKEACSYCLDMMDADLMPQPDTF 589

Query: 466 EVTMHKLKKAFYNE 479
              M  LKK F+ +
Sbjct: 590 AKLMRGLKKLFHRQ 603


>gi|356531098|ref|XP_003534115.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
           mitochondrial-like [Glycine max]
          Length = 466

 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 105/414 (25%), Positives = 184/414 (44%), Gaps = 22/414 (5%)

Query: 63  ASSDDIESALACTGI-IPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLS--PYAWNLM 119
           A  +++E+AL   GI + TP +   + +L YD    A+ FF WAG  +  S  P A+N M
Sbjct: 5   AGFNNMENALGQLGIPLSTPLVTGGLHRLRYDE-KIALRFFTWAGHQEDYSHEPCAYNDM 63

Query: 120 VDVLG----KNGRFEQMWNAVRVMKEDGVLSLPT--FASIFDSYCGAGKYDEAVMSFDVM 173
           +D+L     K  +F  + + +  MK +    +P      I   Y    KY   +  F   
Sbjct: 64  MDILSSTRYKVKQFRIVCDVLEYMKRNNRTMVPAEVLLVILRKY--TEKYLTHMQKFAKK 121

Query: 174 SMHGVEQ--DVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
               V+   ++ A N LL A+C+       A     +++K V P+ +++ IL+ GW +  
Sbjct: 122 KRIRVKTQLEINAFNLLLDALCKC-CLVEDAESLYKKMRKTVKPNAETYNILVFGWCRVR 180

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL---KFLRVMKGENCFPT 288
           N     K   EM+E     P++   Y T + T  +   + EA+   +F+R        PT
Sbjct: 181 NPTRGMKLLEEMIE-LGHRPDN-FTYNTAIDTYCKTGMITEAVDLFEFMRTKGSTISSPT 238

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
            K ++  +  L + +      +L   M+  G   +P++  Y  +I  +C    +D  ++F
Sbjct: 239 AKTYAIIIVALAQHDRMEDCFKLIGHMISSG--CLPDVTTYKEIIEGMCMCGKIDEAYKF 296

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
            ++M      PD +TYN   + L  NK+  +  K +  MI+    P+       I+M  +
Sbjct: 297 LEEMGNKSYRPDIVTYNCFLKVLCDNKKSEDALKLYGRMIELNCIPSVQTYNMLISMFFE 356

Query: 409 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
            D+P+ A E W  I   G  P   +   ++ GL N  ++ D     EE++N  +
Sbjct: 357 MDDPDGAFETWQEIDNRGCRPDTDTYCVMIEGLFNCNKMEDACFLLEEVINEGV 410


>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 716

 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 180/372 (48%), Gaps = 9/372 (2%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEA 166
           G  ++ Y  N+MV+ L K+G+ + +   +  M+E GV + L T+ ++ ++YC  G   EA
Sbjct: 219 GNIVNVYTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRGLVSEA 278

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSF-AILL 224
               D M+  G++  +   N+L++ +C+ E    RA   L+ +  + + P+  +F  +L+
Sbjct: 279 FGLVDCMAGKGLKPGLFTYNALINGLCK-EGSYERAKRVLDEMLGVGLCPNAATFNPMLV 337

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           E   KE +V EA + F EM++R    P+ ++++ + +    R  ++  AL +   MKG  
Sbjct: 338 ESCRKE-DVWEAERVFNEMLQR-GVVPD-LISFSSIVGVFSRNGELGRALAYFEKMKGVG 394

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
             P    ++  ++   + +D + A+++ + MV  G   + +++ YN ++  LC    +D+
Sbjct: 395 LVPDTVIYTILINGYCRNDDVSGALKMRNEMVERG--CVMDVVTYNTLLNGLCRGKMLDD 452

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
               F +MV  G FPD  T   +     K+  + +    F  M     +P  +   T + 
Sbjct: 453 ADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMD 512

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 464
                 E E A E+W  ++   I P   S + L+ G  +LG +S+  R  +EM  + I  
Sbjct: 513 GFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKP 572

Query: 465 YEVTMHKLKKAF 476
             VT + + K +
Sbjct: 573 TLVTCNTIIKGY 584



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 155/339 (45%), Gaps = 13/339 (3%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED-GVLSLP---TFASIFDSYCGA 160
           AG+G +   + +N +++ L K G +E+   A RV+ E  GV   P   TF  +    C  
Sbjct: 286 AGKGLKPGLFTYNALINGLCKEGSYER---AKRVLDEMLGVGLCPNAATFNPMLVESCRK 342

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDS 219
               EA   F+ M   GV  D+++ +S++    R   +  RAL +  ++K + + PD   
Sbjct: 343 EDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRN-GELGRALAYFEKMKGVGLVPDTVI 401

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           + IL+ G+ +  +V  A K   EMVER       V+ Y T L  L RGK +D+A +  + 
Sbjct: 402 YTILINGYCRNDDVSGALKMRNEMVER--GCVMDVVTYNTLLNGLCRGKMLDDADELFKE 459

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
           M     FP     +  +    K  + T A+ L++ M     +L P+++ YN ++   C  
Sbjct: 460 MVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMT--LRSLKPDVVTYNTLMDGFCKV 517

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
            +++     +  M+    FP  ++++++         V E  + + EM +   +PT + C
Sbjct: 518 GEMEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTC 577

Query: 400 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 438
            T I   L A     A +  N ++  G+ P   + N L+
Sbjct: 578 NTIIKGYLRAGNLSKANDFLNTMISEGVPPDCITYNTLI 616



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 127/292 (43%), Gaps = 5/292 (1%)

Query: 139 MKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           M E G V+ + T+ ++ +  C     D+A   F  M   GV  D   + +L+   C+  N
Sbjct: 425 MVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGN 484

Query: 198 QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
            T     F     + + PD  ++  L++G+ K G +E+A + + +M+ R E  P ++ ++
Sbjct: 485 MTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISR-EIFPSYI-SF 542

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317
              +        V EA +    MK +   PTL   +  +   ++  + + A    + M+ 
Sbjct: 543 SILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMIS 602

Query: 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
            G  + P+ I YN +I      ++ D  F   + M   G  P+ +TYN I     ++ R+
Sbjct: 603 EG--VPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRM 660

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
            E E   H+MI     P      + I   +  D  + A  + + +L+ G +P
Sbjct: 661 QEAEMVLHKMIDKGINPDKSTYTSLINGYVSKDNMKEAFRVHDEMLQRGFVP 712



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 121/291 (41%), Gaps = 42/291 (14%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG  +    +N +++ L +    +      + M E GV     T  ++   YC  G   +
Sbjct: 428 RGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTK 487

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICR-QENQTSRALEFLNRVKKIVDPDGDSFAILL 224
           A+  F+ M++  ++ DVV  N+L+   C+  E + ++ L + + + + + P   SF+IL+
Sbjct: 488 ALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWY-DMISREIFPSYISFSILI 546

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G+   G V EA + + EM E+    P  V    T +   +R   + +A  FL  M  E 
Sbjct: 547 NGFCSLGLVSEAFRLWDEMKEK-GIKPTLVTC-NTIIKGYLRAGNLSKANDFLNTMISEG 604

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLL-------- 336
             P    ++  ++  VK  +   A  L + M   G  L+PNL+ YNA++G          
Sbjct: 605 VPPDCITYNTLINSFVKEENFDRAFFLINNMEERG--LLPNLVTYNAILGGFSRHGRMQE 662

Query: 337 ---------------------------CNNDDVDNVFRFFDQMVFHGAFPD 360
                                       + D++   FR  D+M+  G  PD
Sbjct: 663 AEMVLHKMIDKGINPDKSTYTSLINGYVSKDNMKEAFRVHDEMLQRGFVPD 713


>gi|449463822|ref|XP_004149630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49730-like [Cucumis sativus]
          Length = 641

 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 108/453 (23%), Positives = 183/453 (40%), Gaps = 13/453 (2%)

Query: 19  SSSSTTTSPTSHNP-HRPTRPRFPTH-LDAPYISSSARIICEILA--HASSDDIESALAC 74
           +S + TT      P H  T P    H  DA   S     +  IL   H     +E AL  
Sbjct: 41  TSPNGTTQRGGFGPIHLKTTPHESAHDRDADEFSVDVEKVYRILRKFHTRVPKLELALQE 100

Query: 75  TGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQM 132
           +G+I    L   VL    D+ +    FF WA +  G R S   +  M+  LGK  +F  +
Sbjct: 101 SGVIMRSGLPERVLSRCGDAGNLGYRFFVWASKQPGYRHSYEVYKAMIKTLGKMRQFGAV 160

Query: 133 WNAVRVMKEDG--VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS 190
           W  +  M+++   +L+   F  +   +       +AV   D M  +G E D      LL 
Sbjct: 161 WALIEEMRKENPYMLTPEVFIVLMRRFASVRMVKKAVEVLDEMPKYGCEPDEYVFGCLLD 220

Query: 191 AICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
           A+C+       A      ++   +P+   F  LL GW +EG + EA     ++ E   + 
Sbjct: 221 ALCKN-GSVKEAASLFEDMRVRFNPNLRHFTSLLYGWCREGKIMEAKHVLVQIKEA-GFE 278

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P+ ++ Y   L    +  ++ +A   L  MK  NC P    F+  +    K      A++
Sbjct: 279 PD-IVVYNNLLGGYAQAGKMRDAFDLLAEMKKVNCGPNAASFTILIQSFCKTEKMDEAMR 337

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
           ++  M G G     +++ Y  +I   C   + D  +   D M+  G  P  L+Y  I   
Sbjct: 338 IFTEMQGSGCE--ADVVTYTTLISGFCKWGNTDKAYEILDDMIQKGHDPSQLSYLCIMMA 395

Query: 371 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 430
             K + + E  +   EM K    P      T I ++    + + A+ +W  +   G+ P 
Sbjct: 396 HEKKEELEECMELIEEMRKIGCVPDLNIYNTMIRLVCKLGDLKEAVRLWGEMQAGGLNPG 455

Query: 431 EASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
             +   ++ G  + G L +   + +EM+ R +L
Sbjct: 456 LDTYILMVHGFLSQGCLVEACDYFKEMVERGLL 488



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 88/374 (23%), Positives = 161/374 (43%), Gaps = 14/374 (3%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           Y +  ++D L KNG  ++  +    M+     +L  F S+   +C  GK  EA      +
Sbjct: 213 YVFGCLLDALCKNGSVKEAASLFEDMRVRFNPNLRHFTSLLYGWCREGKIMEAKHVLVQI 272

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGN 232
              G E D+V  N+LL     Q  +   A + L  +KK+   P+  SF IL++ + K   
Sbjct: 273 KEAGFEPDIVVYNNLLGGYA-QAGKMRDAFDLLAEMKKVNCGPNAASFTILIQSFCKTEK 331

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           ++EA + F EM  +       V+ Y T +    +    D+A + L  M  +   P+   +
Sbjct: 332 MDEAMRIFTEM--QGSGCEADVVTYTTLISGFCKWGNTDKAYEILDDMIQKGHDPSQLSY 389

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
              +    K  +    ++L + M  IG   +P+L +YN +I L+C   D+    R + +M
Sbjct: 390 LCIMMAHEKKEELEECMELIEEMRKIG--CVPDLNIYNTMIRLVCKLGDLKEAVRLWGEM 447

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL--NCATAITMLLDAD 410
              G  P   TY ++    +    + E   +F EM++      P           LL A+
Sbjct: 448 QAGGLNPGLDTYILMVHGFLSQGCLVEACDYFKEMVERGLLSAPQYGTLKELTNALLRAE 507

Query: 411 EPEIAIEIWNYILENGILPLEASANELLV-GLRNLGRLSDVRRFAEEMLNRRIL----IY 465
           + E+A  +W+ +   G   L  SA  + +  L + G + +   +  +M++  ++     +
Sbjct: 508 KLEMAKNMWSCMTTKGC-ELNVSAWTIWIHALFSNGHVKEACSYCLDMMDADLMPQPDTF 566

Query: 466 EVTMHKLKKAFYNE 479
              M  LKK F+ +
Sbjct: 567 AKLMRGLKKLFHRQ 580


>gi|297745840|emb|CBI15896.3| unnamed protein product [Vitis vinifera]
          Length = 650

 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 168/373 (45%), Gaps = 24/373 (6%)

Query: 115 AWNLMVDVLGKNGRFEQ---MWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
           ++N+M++ L K G+F++   +W+  R+ K +    L T++++    CG+G  D A   + 
Sbjct: 257 SYNVMINGLCKCGKFDESFEIWH--RMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYK 314

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
            M+ +GV  DVV  N++L+   R   +    LE    ++K       S+ IL+ G  +  
Sbjct: 315 EMAENGVSPDVVVYNTMLNGYLRA-GRIEECLELWKVMEKEGCRTVVSYNILIRGLFENA 373

Query: 232 NVEEANKTFGEMVERFEWNPEH-----VLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
            V+EA       +  +E  PE       + Y   +  L +   +++AL  L   + EN  
Sbjct: 374 KVDEA-------ISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILE--EAENGR 424

Query: 287 PTLKFF--SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
             L  F  S+ ++ L +         + D M   G    PN  + NAVI        +++
Sbjct: 425 GDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCK--PNPHVCNAVINGFVRASKLED 482

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
             RFF  MV  G FP  +TYN +   L K +R  E      EM+   W+P  +  +  + 
Sbjct: 483 ALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMN 542

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 464
            L    + ++A+ +W   LE G  P     N ++ GL + G++ D  +   EM  R+ + 
Sbjct: 543 GLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVP 602

Query: 465 YEVTMHKLKKAFY 477
             VT + L + FY
Sbjct: 603 NLVTHNTLMEGFY 615



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/311 (21%), Positives = 143/311 (45%), Gaps = 6/311 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
           +N M++   + GR E+     +VM+++G  ++ ++  +        K DEA+  ++++  
Sbjct: 328 YNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIRGLFENAKVDEAISIWELLPE 387

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVE 234
                D +    L+  +C+     ++AL  L   +    D D  +++ ++ G  +EG ++
Sbjct: 388 KDCCADSMTYGVLVHGLCKN-GYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLD 446

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           E      +M +       HV      +   +R  ++++AL+F   M  + CFPT+  ++ 
Sbjct: 447 EVAGVLDQMTKHGCKPNPHVC--NAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNT 504

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
            ++ L K    + A  L   M+  G+   PN+I Y+ ++  LC    +D     + Q + 
Sbjct: 505 LINGLSKAERFSEAYALVKEMLHKGWK--PNMITYSLLMNGLCQGKKLDMALNLWCQALE 562

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 414
            G  PD   +N+I   L  + +V +  + + EM + +  P  +   T +       + E 
Sbjct: 563 KGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFER 622

Query: 415 AIEIWNYILEN 425
           A +IW++IL++
Sbjct: 623 ASKIWDHILQS 633



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 104/532 (19%), Positives = 205/532 (38%), Gaps = 93/532 (17%)

Query: 28  TSHNPHRP-----TRPRFPTHLDAPYISSS--ARIICEILAHASSDDIESALACTGIIPT 80
           +  NPH       +  RFP +   PY+      R+    L    S  +E  L  T     
Sbjct: 19  SEKNPHSALSIFDSVTRFPGYSHTPYVFHHILKRLFDPKLVAHVSRIVE--LIRTQKCKC 76

Query: 81  PDLVHEVLQLSYDS---PSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNA 135
           P+ V   +  +Y     P  A+D F+      G +    ++N +++ L ++ ++++  + 
Sbjct: 77  PEDVALTVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESF 136

Query: 136 VRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194
               +  G+  +L T+  +    C   ++D+A    + M   G   DV +  +L++++ +
Sbjct: 137 FLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAK 196

Query: 195 QENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTF------------- 240
                S AL+  + + ++ V PD   + IL++G+ K+G++  A++ +             
Sbjct: 197 N-GYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNI 255

Query: 241 -------------GEMVERFE-WN-------PEHVLAYETFLITLIRGKQVDEALKFLRV 279
                        G+  E FE W+        + +  Y T +  L     +D A +  + 
Sbjct: 256 PSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKE 315

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
           M      P +  ++  L+  ++       ++LW +M   G      ++ YN +I  L  N
Sbjct: 316 MAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCR---TVVSYNILIRGLFEN 372

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN------------------------- 374
             VD     ++ +       DS+TY ++   L KN                         
Sbjct: 373 AKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAY 432

Query: 375 ----------KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 424
                      R+ EV     +M K+  +P P  C   I   + A + E A+  +  ++ 
Sbjct: 433 SSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVS 492

Query: 425 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR----RILIYEVTMHKL 472
            G  P   + N L+ GL    R S+     +EML++     ++ Y + M+ L
Sbjct: 493 KGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGL 544



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 88/413 (21%), Positives = 178/413 (43%), Gaps = 14/413 (3%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVR 137
           +P  V ++L+ S  +P SA+  F    R  G   +PY ++ ++  L        +   V 
Sbjct: 9   SPKRVIKLLK-SEKNPHSALSIFDSVTRFPGYSHTPYVFHHILKRLFDPKLVAHVSRIVE 67

Query: 138 VMKEDGVLSLPTFA-SIFDSYCGAGKYDEAVMSFDVM-SMHGVEQDVVAVNSLLSAICRQ 195
           +++          A ++  +Y      D+A+  F  M  + G +  + + NSLL+A+   
Sbjct: 68  LIRTQKCKCPEDVALTVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIES 127

Query: 196 ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
                    FL      + P+  ++ IL++   ++   ++A +    M E+  ++P+ V 
Sbjct: 128 NKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQ-GFSPD-VF 185

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
           +Y T + +L +   + +ALK    M      P +  ++  +D   K  D  +A ++W+ +
Sbjct: 186 SYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERL 245

Query: 316 VGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 375
           +  G ++ PN+  YN +I  LC     D  F  + +M  +    D  TY+ +   L  + 
Sbjct: 246 LK-GPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSG 304

Query: 376 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 435
            +    + + EM +N   P  +   T +   L A   E  +E+W  + + G   +  S N
Sbjct: 305 NLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTV-VSYN 363

Query: 436 ELLVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVTMHKL-KKAFYNESRSM 483
            L+ GL    ++ +     E +  +      + Y V +H L K  + N++ S+
Sbjct: 364 ILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSI 416


>gi|147833070|emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera]
          Length = 913

 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 168/373 (45%), Gaps = 24/373 (6%)

Query: 115 AWNLMVDVLGKNGRFEQ---MWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
           ++N+M++ L K G+F++   +W+  R+ K +    L T++++    CG+G  D A   + 
Sbjct: 232 SYNVMINGLCKCGKFDESFEIWH--RMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYK 289

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
            M+ +GV  DVV  N++L+   R   +    LE    ++K       S+ IL+ G  +  
Sbjct: 290 EMAENGVSPDVVVYNTMLNGYLRA-GRIEECLELWKVMEKEGCRTVVSYNILIRGLFENA 348

Query: 232 NVEEANKTFGEMVERFEWNPEH-----VLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
            V+EA       +  +E  PE       + Y   +  L +   +++AL  L   + EN  
Sbjct: 349 KVDEA-------ISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILE--EAENGR 399

Query: 287 PTLKFF--SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
             L  F  S+ ++ L +         + D M   G    PN  + NAVI        +++
Sbjct: 400 GDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCK--PNPYVCNAVINGFVRASKLED 457

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
             RFF  MV  G FP  +TYN +   L K +R  E      EM++  W+P  +  +  + 
Sbjct: 458 ALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLLMN 517

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 464
            L    + ++A+ +W   LE G  P     N ++ GL + G++ D  +   EM  R  + 
Sbjct: 518 GLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRNCVP 577

Query: 465 YEVTMHKLKKAFY 477
             VT + L + FY
Sbjct: 578 NLVTHNTLMEGFY 590



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 84/374 (22%), Positives = 171/374 (45%), Gaps = 8/374 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
           +N M++   + GR E+     +VM+++G  ++ ++  +        K DEA+  ++++  
Sbjct: 303 YNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIRGLFENAKVDEAISIWELLPE 362

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVE 234
                D +    L+  +C+     ++AL  L   +    D D  +++ ++ G  +EG ++
Sbjct: 363 KDCCADSMTYGVLVHGLCKN-GYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLD 421

Query: 235 EANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           E      +M +   + NP         +   +R  ++++AL+F   M  + CFPT+  ++
Sbjct: 422 EVAGVLDQMTKHGCKPNP---YVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYN 478

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             ++ L K    + A  L   M+  G+   PN+I Y+ ++  LC    +D     + Q +
Sbjct: 479 TLINGLSKAERFSEAYALVKEMLQKGWK--PNMITYSLLMNGLCQGKKLDMALNLWCQAL 536

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G  PD   +N+I   L  + +V +  + + EM +    P  +   T +       + E
Sbjct: 537 EKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRNCVPNLVTHNTLMEGFYKVRDFE 596

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 473
            A +IW++IL+ G+ P   S N  L GL +  R+SD   F  + ++R +L   +T + L 
Sbjct: 597 RASKIWDHILQYGLQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNILV 656

Query: 474 KAFYNESRSMRDIF 487
           + +      M  +F
Sbjct: 657 QGYLALKGYMEPVF 670



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 101/520 (19%), Positives = 200/520 (38%), Gaps = 97/520 (18%)

Query: 46  APYISSSARII----CEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDS------- 94
           AP   S  R+I     E   H++    +S     G   TP + H +L+  +D        
Sbjct: 4   APKSLSPKRVIKLLKSEKNPHSALSIFDSVTRFPGYSHTPYVFHHILKRLFDPKLVAHAY 63

Query: 95  -----PSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-S 146
                P  A+D F+      G +    ++N +++ L ++ ++++  +     +  G+  +
Sbjct: 64  AKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPN 123

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206
           L T+  +    C   ++D+A    + M   G   DV +  +L++++ +     S AL+  
Sbjct: 124 LQTYNILIKISCRKKQFDKAKELLNWMWGQGFSPDVFSYGTLINSLAKN-GYMSDALKLF 182

Query: 207 NRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTF------------------------- 240
           + + ++ V PD   + IL++G+ K+G++  A++ +                         
Sbjct: 183 DEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCK 242

Query: 241 -GEMVERFE-WN-------PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            G+  E FE W+        + +  Y T +  L     +D A +  + M      P +  
Sbjct: 243 CGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVV 302

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           ++  L+  ++       ++LW +M   G      ++ YN +I  L  N  VD     ++ 
Sbjct: 303 YNTMLNGYLRAGRIEECLELWKVMEKEGCR---TVVSYNILIRGLFENAKVDEAISIWEL 359

Query: 352 MVFHGAFPDSLTYNMIFECLIKN-----------------------------------KR 376
           +       DS+TY ++   L KN                                    R
Sbjct: 360 LPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGR 419

Query: 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 436
           + EV     +M K+  +P P  C   I   + A + E A+  +  ++  G  P   + N 
Sbjct: 420 LDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNT 479

Query: 437 LLVGLRNLGRLSDVRRFAEEMLNR----RILIYEVTMHKL 472
           L+ GL    R S+     +EML +     ++ Y + M+ L
Sbjct: 480 LINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLLMNGL 519



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 74/333 (22%), Positives = 145/333 (43%), Gaps = 24/333 (7%)

Query: 164 DEAVMSFDVM-SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFA 221
           D+A+  F  M  + G +  + + NSLL+A+  + N+   A  F    + + + P+  ++ 
Sbjct: 70  DQALDIFQRMHEIFGCQPGIRSYNSLLNALI-ESNKWDEAESFFLYFETMGLSPNLQTYN 128

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEW------NPEHVLAYETFLITLIRGKQVDEALK 275
           IL++       +    K F +  E   W      +P+ V +Y T + +L +   + +ALK
Sbjct: 129 ILIK-------ISCRKKQFDKAKELLNWMWGQGFSPD-VFSYGTLINSLAKNGYMSDALK 180

Query: 276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGL 335
               M      P +  ++  +D   K  D  +A ++W+ ++  G ++ PN+  YN +I  
Sbjct: 181 LFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLK-GPSVYPNIPSYNVMING 239

Query: 336 LCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 395
           LC     D  F  + +M  +    D  TY+ +   L  +  +    + + EM +N   P 
Sbjct: 240 LCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPD 299

Query: 396 PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 455
            +   T +   L A   E  +E+W  + + G   +  S N L+ GL    ++ +     E
Sbjct: 300 VVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTV-VSYNILIRGLFENAKVDEAISIWE 358

Query: 456 EMLNRRI----LIYEVTMHKL-KKAFYNESRSM 483
            +  +      + Y V +H L K  + N++ S+
Sbjct: 359 LLPEKDCCADSMTYGVLVHGLCKNGYLNKALSI 391


>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
 gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 163/357 (45%), Gaps = 10/357 (2%)

Query: 127 GRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAV 185
           G+  +    + +++  G +  + T+  +   YC AG+ + A+   D MS   V  DVV  
Sbjct: 151 GKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMS---VSPDVVTY 207

Query: 186 NSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244
           N++L ++C    +  +A+E L+R +++   PD  ++ IL+E   ++  V  A K   EM 
Sbjct: 208 NTILRSLC-DSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMR 266

Query: 245 ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 304
           +R    P+ V+ Y   +  + +  ++DEA+KFL  M    C P +   +  L  +     
Sbjct: 267 DR-GCTPD-VVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGR 324

Query: 305 STHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTY 364
              A +L   M+  GF+  P+++ +N +I  LC    +       ++M  HG  P+SL+Y
Sbjct: 325 WMDAEKLLADMLRKGFS--PSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSY 382

Query: 365 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 424
           N +     K K++    ++   M+     P  +   T +T L    + E A+EI N +  
Sbjct: 383 NPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSS 442

Query: 425 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
            G  P+  + N ++ GL   G+     +  +EM  + +    +T   L      E +
Sbjct: 443 KGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGK 499



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 86/384 (22%), Positives = 159/384 (41%), Gaps = 38/384 (9%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N ++  L  +G+ +Q    + R+++ D    + T+  + ++ C       A+   D M
Sbjct: 206 TYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEM 265

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGN 232
              G   DVV  N L++ IC+ E +   A++FLN +      P+  +  I+L      G 
Sbjct: 266 RDRGCTPDVVTYNVLVNGICK-EGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGR 324

Query: 233 VEEANKTFGEMVER----------------------------FEWNPEH-----VLAYET 259
             +A K   +M+ +                             E  P+H      L+Y  
Sbjct: 325 WMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNP 384

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG 319
            L    + K++D A+++L  M    C+P +  ++  L  L K      AV++ + +   G
Sbjct: 385 LLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKG 444

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
            +  P LI YN VI  L          +  D+M      PD++TY+ +   L +  +V E
Sbjct: 445 CS--PVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDE 502

Query: 380 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 439
             KFFHE  +   +P  +   + +  L  + + + AI+   +++  G  P E S   L+ 
Sbjct: 503 AIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIE 562

Query: 440 GLRNLGRLSDVRRFAEEMLNRRIL 463
           GL   G   +      E+ N+ ++
Sbjct: 563 GLAYEGMAKEALELLNELCNKGLM 586



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 140/303 (46%), Gaps = 11/303 (3%)

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR--QENQTSRALEFLNRVKKIVDPDG 217
            G+ +E     + M  HG   D++   +L+   CR  +  + ++ LE L     +  PD 
Sbjct: 115 TGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAV--PDV 172

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            ++ +++ G+ K G +  A      +++R   +P+ V+ Y T L +L    ++ +A++ L
Sbjct: 173 ITYNVMISGYCKAGEINNAL----SVLDRMSVSPD-VVTYNTILRSLCDSGKLKQAMEVL 227

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337
             M   +C+P +  ++  ++   + +   HA++L D M   G    P+++ YN ++  +C
Sbjct: 228 DRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCT--PDVVTYNVLVNGIC 285

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
               +D   +F + M   G  P+ +T+N+I   +    R  + EK   +M++  + P+ +
Sbjct: 286 KEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVV 345

Query: 398 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
                I  L        AI+I   + ++G  P   S N LL G     ++     + E M
Sbjct: 346 TFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERM 405

Query: 458 LNR 460
           ++R
Sbjct: 406 VSR 408


>gi|255547888|ref|XP_002515001.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546052|gb|EEF47555.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 466

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 97/386 (25%), Positives = 165/386 (42%), Gaps = 47/386 (12%)

Query: 44  LDAPYISSSARIICEILAHASSDDIESALA----CTGIIPTPDLVHEVLQLSYDSPSSAV 99
           LD+   S    I+ +I   +S D+I  +L     C  I  + +LV ++L    D   SA+
Sbjct: 10  LDSKRQSDIDVIVAKIRVGSSHDEIVQSLVHDEVCNSIHLSHELVDKLLFRFKDDWKSAL 69

Query: 100 DFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSY 157
             FRWA    G + SP A++ MVD++GK  + +QM   +  M++   ++L T       +
Sbjct: 70  GVFRWAESRAGYKHSPEAYDTMVDIMGKMKQMDQMEFLLEEMEKGQHVTLKTVGKAMRRF 129

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG 217
            GA +++  +  FD +   G+E++  ++N LL  +C+ E +   A E    +K  + P+ 
Sbjct: 130 AGARQWENVLRVFDKLGTFGLEKNTESMNLLLDTLCK-ERKVELAREIFLDLKSHISPNA 188

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
           ++F I + GW K   VEEA  T  E                                   
Sbjct: 189 NTFNIFIHGWCKVNRVEEAYWTIQE----------------------------------- 213

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337
             MKG  C P +  +S  +      ++ +   +L D M   G  L+PN++ Y +V+  L 
Sbjct: 214 --MKGHGCTPCVISYSTIVQFYCHRSNFSKVYELLDEMEAQG--LIPNVVTYTSVMSALA 269

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH-EMIKNEWQPTP 396
            +++ +   +   +M   G  PD+L YN +   L K  R  E  + F  EM      P  
Sbjct: 270 KSEEYEEALQIAQRMKSVGCKPDTLFYNSLIHTLGKAGRPEEAIQVFEVEMPNTGVPPNT 329

Query: 397 LNCATAITMLLDADEPEIAIEIWNYI 422
               + I ML    +   A+ +   I
Sbjct: 330 STYNSMIAMLCHHSQERKALNLLKEI 355



 Score = 40.4 bits (93), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 33/148 (22%), Positives = 62/148 (41%), Gaps = 1/148 (0%)

Query: 313 DIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 372
           +I + +  ++ PN   +N  I   C  + V+  +    +M  HG  P  ++Y+ I +   
Sbjct: 175 EIFLDLKSHISPNANTFNIFIHGWCKVNRVEEAYWTIQEMKGHGCTPCVISYSTIVQFYC 234

Query: 373 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 432
                 +V +   EM      P  +   + ++ L  ++E E A++I   +   G  P   
Sbjct: 235 HRSNFSKVYELLDEMEAQGLIPNVVTYTSVMSALAKSEEYEEALQIAQRMKSVGCKPDTL 294

Query: 433 SANELLVGLRNLGRLSD-VRRFAEEMLN 459
             N L+  L   GR  + ++ F  EM N
Sbjct: 295 FYNSLIHTLGKAGRPEEAIQVFEVEMPN 322


>gi|356540343|ref|XP_003538649.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Glycine max]
          Length = 543

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 98/395 (24%), Positives = 179/395 (45%), Gaps = 11/395 (2%)

Query: 70  SALACTGII--PTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGK 125
           +ALA  G+   P+  LV +VL    +    A+ FF+WA    G R SP   NLMVD+LGK
Sbjct: 111 AALALDGLSFQPSSGLVSQVLNRFSNDWVPALGFFKWAKSQTGYRHSPELCNLMVDILGK 170

Query: 126 NGRFEQMWNAVRVMK--EDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV 183
              F+ M + V  M   E G ++L T A +      A K+++A+ +F  M   GV +D  
Sbjct: 171 CKSFDPMSDLVEEMAKLEQGYVTLETMAKVIRRLAKARKHEDAIEAFRRMDKFGVNKDTA 230

Query: 184 AVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
           A+N L+ A+ + ++    A + +   K ++     SF +L+ GW +    + A K   +M
Sbjct: 231 ALNVLIDALVKGDS-VEHAHKVVLEFKGLIPLSSHSFNVLMHGWCRARKFDNARKAMEDM 289

Query: 244 VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303
            E   + P+ V +Y +F+      +   +  + L  M+   C P    ++  +  L K  
Sbjct: 290 KE-LGFEPD-VFSYTSFIEAYCHERDFRKVDQVLEEMRENGCPPNAVTYTTVMLHLGKAG 347

Query: 304 DSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLT 363
             + A+++++ M   G   + +  +Y+ +I +L     + +    F+ M   G   D +T
Sbjct: 348 QLSKALEVYEKMKCDG--CVADTPVYSCMIFILGKAGRLKDACDVFEDMPKQGVVRDVVT 405

Query: 364 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 423
           YN +      + R     +   EM     +P        + M       ++   + +++ 
Sbjct: 406 YNTMISTACAHSREETALRLLKEMEDGSCKPNVGTYHPLLKMCCKKKRMKVLKFLLDHMF 465

Query: 424 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
           +N I P  A+ + L+  L   G+++D   F EEM+
Sbjct: 466 KNDISPDLATYSLLVNALCKTGKVADAYSFLEEMV 500



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 76/361 (21%), Positives = 134/361 (37%), Gaps = 40/361 (11%)

Query: 98  AVDFFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDS 156
           A++ FR   + G      A N+++D L K    E     V   K    LS  +F  +   
Sbjct: 213 AIEAFRRMDKFGVNKDTAALNVLIDALVKGDSVEHAHKVVLEFKGLIPLSSHSFNVLMHG 272

Query: 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPD 216
           +C A K+D A  + + M   G E DV +  S + A C                       
Sbjct: 273 WCRARKFDNARKAMEDMKELGFEPDVFSYTSFIEAYCH---------------------- 310

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
                        E +  + ++   EM  R    P + + Y T ++ L +  Q+ +AL+ 
Sbjct: 311 -------------ERDFRKVDQVLEEM--RENGCPPNAVTYTTVMLHLGKAGQLSKALEV 355

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLL 336
              MK + C      +S  + IL K      A  +++ M   G  ++ +++ YN +I   
Sbjct: 356 YEKMKCDGCVADTPVYSCMIFILGKAGRLKDACDVFEDMPKQG--VVRDVVTYNTMISTA 413

Query: 337 CNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 396
           C +   +   R   +M      P+  TY+ + +   K KR+  ++     M KN+  P  
Sbjct: 414 CAHSREETALRLLKEMEDGSCKPNVGTYHPLLKMCCKKKRMKVLKFLLDHMFKNDISPDL 473

Query: 397 LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 456
              +  +  L    +   A      ++  G  P  ++   L   L +L  L +  R  E 
Sbjct: 474 ATYSLLVNALCKTGKVADAYSFLEEMVLKGFTPKPSTLKGLAGELESLSMLEEKERVEEW 533

Query: 457 M 457
           M
Sbjct: 534 M 534



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 50/237 (21%), Positives = 96/237 (40%), Gaps = 10/237 (4%)

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLM 323
           L + ++ ++A++  R M            +  +D LVK +   HA ++     G    L+
Sbjct: 204 LAKARKHEDAIEAFRRMDKFGVNKDTAALNVLIDALVKGDSVEHAHKVVLEFKG----LI 259

Query: 324 P-NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
           P +   +N ++   C     DN  +  + M   G  PD  +Y    E     +   +V++
Sbjct: 260 PLSSHSFNVLMHGWCRARKFDNARKAMEDMKELGFEPDVFSYTSFIEAYCHERDFRKVDQ 319

Query: 383 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 442
              EM +N   P  +   T +  L  A +   A+E++  +  +G +      + ++  L 
Sbjct: 320 VLEEMRENGCPPNAVTYTTVMLHLGKAGQLSKALEVYEKMKCDGCVADTPVYSCMIFILG 379

Query: 443 NLGRLSDVRRFAEEM----LNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCK 495
             GRL D     E+M    + R ++ Y  TM     A   E  ++R + +  +  CK
Sbjct: 380 KAGRLKDACDVFEDMPKQGVVRDVVTYN-TMISTACAHSREETALRLLKEMEDGSCK 435


>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
           [Vitis vinifera]
          Length = 691

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 168/373 (45%), Gaps = 24/373 (6%)

Query: 115 AWNLMVDVLGKNGRFEQ---MWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
           ++N+M++ L K G+F++   +W+  R+ K +    L T++++    CG+G  D A   + 
Sbjct: 257 SYNVMINGLCKCGKFDESFEIWH--RMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYK 314

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
            M+ +GV  DVV  N++L+   R   +    LE    ++K       S+ IL+ G  +  
Sbjct: 315 EMAENGVSPDVVVYNTMLNGYLRA-GRIEECLELWKVMEKEGCRTVVSYNILIRGLFENA 373

Query: 232 NVEEANKTFGEMVERFEWNPEH-----VLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
            V+EA       +  +E  PE       + Y   +  L +   +++AL  L   + EN  
Sbjct: 374 KVDEA-------ISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILE--EAENGR 424

Query: 287 PTLKFF--SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
             L  F  S+ ++ L +         + D M   G    PN  + NAVI        +++
Sbjct: 425 GDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCK--PNPHVCNAVINGFVRASKLED 482

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
             RFF  MV  G FP  +TYN +   L K +R  E      EM+   W+P  +  +  + 
Sbjct: 483 ALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMN 542

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 464
            L    + ++A+ +W   LE G  P     N ++ GL + G++ D  +   EM  R+ + 
Sbjct: 543 GLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVP 602

Query: 465 YEVTMHKLKKAFY 477
             VT + L + FY
Sbjct: 603 NLVTHNTLMEGFY 615



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 83/361 (22%), Positives = 167/361 (46%), Gaps = 6/361 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
           +N M++   + GR E+     +VM+++G  ++ ++  +        K DEA+  ++++  
Sbjct: 328 YNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIRGLFENAKVDEAISIWELLPE 387

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVE 234
                D +    L+  +C+     ++AL  L   +    D D  +++ ++ G  +EG ++
Sbjct: 388 KDCCADSMTYGVLVHGLCKN-GYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLD 446

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           E      +M +       HV      +   +R  ++++AL+F   M  + CFPT+  ++ 
Sbjct: 447 EVAGVLDQMTKHGCKPNPHVC--NAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNT 504

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
            ++ L K    + A  L   M+  G+   PN+I Y+ ++  LC    +D     + Q + 
Sbjct: 505 LINGLSKAERFSEAYALVKEMLHKGWK--PNMITYSLLMNGLCQGKKLDMALNLWCQALE 562

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 414
            G  PD   +N+I   L  + +V +  + + EM + +  P  +   T +       + E 
Sbjct: 563 KGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFER 622

Query: 415 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKK 474
           A +IW++IL+ G  P   S N  L GL +  R+SD   F  + ++R +L   +T + L +
Sbjct: 623 ASKIWDHILQYGPQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNILVR 682

Query: 475 A 475
           A
Sbjct: 683 A 683



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 104/532 (19%), Positives = 205/532 (38%), Gaps = 93/532 (17%)

Query: 28  TSHNPHRP-----TRPRFPTHLDAPYISSS--ARIICEILAHASSDDIESALACTGIIPT 80
           +  NPH       +  RFP +   PY+      R+    L    S  +E  L  T     
Sbjct: 19  SEKNPHSALSIFDSVTRFPGYSHTPYVFHHILKRLFDPKLVAHVSRIVE--LIRTQKCKC 76

Query: 81  PDLVHEVLQLSYDS---PSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNA 135
           P+ V   +  +Y     P  A+D F+      G +    ++N +++ L ++ ++++  + 
Sbjct: 77  PEDVALTVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESF 136

Query: 136 VRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194
               +  G+  +L T+  +    C   ++D+A    + M   G   DV +  +L++++ +
Sbjct: 137 FLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAK 196

Query: 195 QENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTF------------- 240
                S AL+  + + ++ V PD   + IL++G+ K+G++  A++ +             
Sbjct: 197 N-GYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNI 255

Query: 241 -------------GEMVERFE-WN-------PEHVLAYETFLITLIRGKQVDEALKFLRV 279
                        G+  E FE W+        + +  Y T +  L     +D A +  + 
Sbjct: 256 PSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKE 315

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
           M      P +  ++  L+  ++       ++LW +M   G      ++ YN +I  L  N
Sbjct: 316 MAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCR---TVVSYNILIRGLFEN 372

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN------------------------- 374
             VD     ++ +       DS+TY ++   L KN                         
Sbjct: 373 AKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAY 432

Query: 375 ----------KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 424
                      R+ EV     +M K+  +P P  C   I   + A + E A+  +  ++ 
Sbjct: 433 SSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVS 492

Query: 425 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR----RILIYEVTMHKL 472
            G  P   + N L+ GL    R S+     +EML++     ++ Y + M+ L
Sbjct: 493 KGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGL 544



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 88/413 (21%), Positives = 178/413 (43%), Gaps = 14/413 (3%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVR 137
           +P  V ++L+ S  +P SA+  F    R  G   +PY ++ ++  L        +   V 
Sbjct: 9   SPKRVIKLLK-SEKNPHSALSIFDSVTRFPGYSHTPYVFHHILKRLFDPKLVAHVSRIVE 67

Query: 138 VMKEDGVLSLPTFA-SIFDSYCGAGKYDEAVMSFDVM-SMHGVEQDVVAVNSLLSAICRQ 195
           +++          A ++  +Y      D+A+  F  M  + G +  + + NSLL+A+   
Sbjct: 68  LIRTQKCKCPEDVALTVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIES 127

Query: 196 ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
                    FL      + P+  ++ IL++   ++   ++A +    M E+  ++P+ V 
Sbjct: 128 NKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQ-GFSPD-VF 185

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
           +Y T + +L +   + +ALK    M      P +  ++  +D   K  D  +A ++W+ +
Sbjct: 186 SYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERL 245

Query: 316 VGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 375
           +  G ++ PN+  YN +I  LC     D  F  + +M  +    D  TY+ +   L  + 
Sbjct: 246 LK-GPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSG 304

Query: 376 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 435
            +    + + EM +N   P  +   T +   L A   E  +E+W  + + G   +  S N
Sbjct: 305 NLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTV-VSYN 363

Query: 436 ELLVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVTMHKL-KKAFYNESRSM 483
            L+ GL    ++ +     E +  +      + Y V +H L K  + N++ S+
Sbjct: 364 ILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSI 416


>gi|413937640|gb|AFW72191.1| hypothetical protein ZEAMMB73_762171 [Zea mays]
          Length = 503

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/340 (27%), Positives = 153/340 (45%), Gaps = 15/340 (4%)

Query: 63  ASSDDIESALA--CTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA---GRGQRLSPYAWN 117
            S +D+  ALA  C+ +  T  +   +L+   D    A+ FF WA   G G   +PYA +
Sbjct: 64  GSVEDLVRALAAECSEVRLTSGVADSLLRGCGDCWKPALGFFLWAQSRGGGYSHTPYACS 123

Query: 118 LMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
            MVD+LGK  + ++MW+ +  M   G++++ T A        A K+ +A++ FD +   G
Sbjct: 124 RMVDLLGKTRQIDRMWDLLSEMHCRGLVTVDTVAKSIRRLAAARKWRDAILLFDQLEDLG 183

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
           +E++   +N LL A+C+ E +   A E    +   + PD  +F I + GW     ++EA 
Sbjct: 184 LERNTETMNVLLDALCK-EKKVELAREVFVMLSPHIAPDAYTFNIFVHGWCSVRRIDEAL 242

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297
            T  EM  R    P  V+ Y   L    + +      + L  M  + C P +  ++  + 
Sbjct: 243 WTIEEMKTR--GFPPIVITYTAVLEAYCKQRNFRRVYEVLDSMGSQGCHPNVITYTMIMT 300

Query: 298 ILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND---DVDNVFRFFDQMVF 354
            L K      A+ + D M   G    P+ + YNA+I LL       + + VFR   +M  
Sbjct: 301 SLTKCERFEEALSVSDRMKSSGCK--PDTLFYNALINLLGRAGHLFEANQVFRV--EMPR 356

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
           +G   +  TYN +   L +  R  +      EM     +P
Sbjct: 357 NGVLRNVATYNTMISILCQYGRDDDALGVLKEMEAQSCKP 396



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 111/259 (42%), Gaps = 8/259 (3%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N+ V       R ++    +  MK  G   +  T+ ++ ++YC    +       D 
Sbjct: 223 YTFNIFVHGWCSVRRIDEALWTIEEMKTRGFPPIVITYTAVLEAYCKQRNFRRVYEVLDS 282

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEG 231
           M   G   +V+    +++++ + E +   AL   +R+K     PD   +  L+    + G
Sbjct: 283 MGSQGCHPNVITYTMIMTSLTKCE-RFEEALSVSDRMKSSGCKPDTLFYNALINLLGRAG 341

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           ++ EAN+ F   + R      +V  Y T +  L +  + D+AL  L+ M+ ++C P L+ 
Sbjct: 342 HLFEANQVFRVEMPR-NGVLRNVATYNTMISILCQYGRDDDALGVLKEMEAQSCKPDLQT 400

Query: 292 FSNALDILVKLNDSTHAVQ--LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
           +   L +L+       AV   L ++    G  L  +L  Y  +I  LC   + D  +  +
Sbjct: 401 YQPLLRLLLGRRGQAAAVHRLLSELRDRNGLGL--DLDTYTLLIHGLCKVGETDWAYLLY 458

Query: 350 DQMVFHGAFPDSLTYNMIF 368
           D+MV     P   T  ++ 
Sbjct: 459 DEMVGSEIVPRPRTCELLL 477


>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
          Length = 1088

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 165/356 (46%), Gaps = 7/356 (1%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCG 159
           F R +  G   +   +N ++++L +N R +  +  + +M  +G+ + + T+  +   YC 
Sbjct: 548 FHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCI 607

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGD 218
            G   +A++  + M   G   ++V  N+++   C   N TS AL  L+ ++     PD  
Sbjct: 608 LGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTS-ALRILDLMRDGGCKPDEW 666

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           S+  L+ G+ K   +E A   F EMV+     P  V  Y   +    + +++D A   L 
Sbjct: 667 SYTELICGFCKISKMESAFGLFNEMVDD-GLCPNEV-TYTALIDGYCKDEKLDTATSLLE 724

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            MK   C P ++ ++  +  L K N+ + A +L  +M+  G  + PN++ Y A+I  LC 
Sbjct: 725 HMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEG--IFPNVVTYTAMIDGLCK 782

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
           N         F++M+  G  P+ LTY+ +   L +  +V E E  F E+ ++   P  + 
Sbjct: 783 NGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEIT 842

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 454
               I   + + + E A      +++ G  P   +   L+ GL+N   L+D R  A
Sbjct: 843 YVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAA 898



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 162/377 (42%), Gaps = 16/377 (4%)

Query: 127 GRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAV 185
           G +E  W     MK  G   ++ T+ ++    C +G    A+  F  MS  GV  + V  
Sbjct: 504 GCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTY 563

Query: 186 NSLLSAICRQENQTSRALEFLNRVKKIVDPDG-----DSFAILLEGWEKEGNVEEANKTF 240
           N+L++ +   EN   R +++   V  ++  +G      ++  +++G+   G+ ++A    
Sbjct: 564 NALINILV--EN---RRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVM 618

Query: 241 GEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV 300
             M++R   +  +++ Y T +           AL+ L +M+   C P    ++  +    
Sbjct: 619 NNMLQR--GHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFC 676

Query: 301 KLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPD 360
           K++    A  L++ MV  G  L PN + Y A+I   C ++ +D      + M   G  P+
Sbjct: 677 KISKMESAFGLFNEMVDDG--LCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPN 734

Query: 361 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 420
             TYN++   L K       E+    MI+    P  +     I  L       +A+E++N
Sbjct: 735 VQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFN 794

Query: 421 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 480
            ++E G LP   + + L+  L   G++ +      E+    ++  E+T  K+ +A Y  S
Sbjct: 795 KMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEA-YIMS 853

Query: 481 RSMRDIFDSLERRCKTS 497
             +   F+ L R  K  
Sbjct: 854 GKVEHAFNFLGRMIKAG 870



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 68/317 (21%), Positives = 126/317 (39%), Gaps = 5/317 (1%)

Query: 167 VMSF-DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
            MSF D++S  G+   + A ++LL  + R     +    +   + + V P+   +  ++ 
Sbjct: 334 TMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVIN 393

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
              K+GNV +A     ++ E  E +P+    Y + ++   R   +D AL+    M  E C
Sbjct: 394 ALCKDGNVADAETIMKKVFES-EMSPD-TFTYTSMILGHCRKHDLDSALQVFNQMAKEGC 451

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P    +S  ++ L        A  L   M+  G  ++P        I  LC+    ++ 
Sbjct: 452 EPNTVTYSTLINGLCDSGRVNEAFDLIREMILHG--ILPTAHTCTGPIIALCDMGCYEDA 509

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
           +R F  M   G  P+  TY  +   L  +  +      FH M ++   P  +     I +
Sbjct: 510 WRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINI 569

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 465
           L++    + A  + N +  NG+     + NE++ G   LG           ML R     
Sbjct: 570 LVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSAN 629

Query: 466 EVTMHKLKKAFYNESRS 482
            VT + + K + +   +
Sbjct: 630 LVTYNTIIKGYCDSGNT 646



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 78/408 (19%), Positives = 155/408 (37%), Gaps = 48/408 (11%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE--DGVLSLPTFA--SIFDS 156
           + R    G + +   +N +++ L K+G    + +A  +MK+  +  +S  TF   S+   
Sbjct: 373 YHRMLSEGVQPNLLIYNAVINALCKDG---NVADAETIMKKVFESEMSPDTFTYTSMILG 429

Query: 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE------------ 204
           +C     D A+  F+ M+  G E + V  ++L++ +C    + + A +            
Sbjct: 430 HCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLC-DSGRVNEAFDLIREMILHGILP 488

Query: 205 ------------------------FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTF 240
                                   F++   K  +P+  ++  L+ G    G ++ A   F
Sbjct: 489 TAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLF 548

Query: 241 GEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV 300
             M  R    P  V  Y   +  L+  +++  A   L +M     F  +  ++  +    
Sbjct: 549 HRM-SRDGVFPNTV-TYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYC 606

Query: 301 KLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPD 360
            L D   A+ + + M+  G +   NL+ YN +I   C++ +  +  R  D M   G  PD
Sbjct: 607 ILGDPKKAMLVMNNMLQRGHS--ANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPD 664

Query: 361 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 420
             +Y  +     K  ++      F+EM+ +   P  +     I      ++ + A  +  
Sbjct: 665 EWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLE 724

Query: 421 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 468
           ++  +G  P   + N L+ GL      S      + M+   I    VT
Sbjct: 725 HMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVT 772


>gi|115482788|ref|NP_001064987.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|22165069|gb|AAM93686.1| putative leaf protein [Oryza sativa Japonica Group]
 gi|31432904|gb|AAP54480.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|113639596|dbj|BAF26901.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|125575306|gb|EAZ16590.1| hypothetical protein OsJ_32064 [Oryza sativa Japonica Group]
          Length = 454

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 173/373 (46%), Gaps = 19/373 (5%)

Query: 109 QRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKY 163
           +R+SP A  +N ++  L K    + M  A+ V+    V+ +P   T+ SI   YC +G+ 
Sbjct: 40  RRVSPDAVTYNSIIAALSKA---QAMDRAMEVLT---VMVMPNCFTYNSIMHGYCSSGQS 93

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
           ++A+  F  M   G+E DVV  NSL+  +C+    T     F + VK+ + PD  ++  L
Sbjct: 94  EKAIGIFRKMCSDGIEPDVVTYNSLMDYLCKNGKCTEARKIFDSMVKRGLKPDITTYGTL 153

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           L G+  +G + E +     MV+       HV  +   +    + ++VDE +     M+ +
Sbjct: 154 LHGYASKGALVEMHDLLALMVQNGMQLDHHV--FNILICAYTKQEKVDEVVLVFSKMRQQ 211

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
              P    +   +D L KL     A+  ++ M+  G  L PN+++Y ++I  LC  D  +
Sbjct: 212 GLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKG--LTPNVVVYTSLIHALCTYDKWE 269

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
                  +++  G  P+ + +N I + L K  RV E +K F  +      P  +  +T I
Sbjct: 270 KAEELIFEILDQGINPNIVFFNTILDSLCKEGRVIESKKLFDLLGHIGVNPDVITYSTLI 329

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LN 459
                A + + A+++   ++  G+ P   + + L+ G   + R+ D     +EM    +N
Sbjct: 330 DGYCLAGKMDGAMKLLTGMVSVGLKPDSVTYSTLINGYCKINRMEDALALFKEMESNGVN 389

Query: 460 RRILIYEVTMHKL 472
             I+ Y + +H L
Sbjct: 390 PDIITYNIILHGL 402



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 145/331 (43%), Gaps = 6/331 (1%)

Query: 98  AVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFD 155
           A+  FR     G       +N ++D L KNG+  +       M + G+   + T+ ++  
Sbjct: 96  AIGIFRKMCSDGIEPDVVTYNSLMDYLCKNGKCTEARKIFDSMVKRGLKPDITTYGTLLH 155

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDP 215
            Y   G   E      +M  +G++ D    N L+ A  +QE      L F    ++ + P
Sbjct: 156 GYASKGALVEMHDLLALMVQNGMQLDHHVFNILICAYTKQEKVDEVVLVFSKMRQQGLTP 215

Query: 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK 275
           +  ++  +++G  K G +++A   F +M+++    P +V+ Y + +  L    + ++A +
Sbjct: 216 NAVNYRTVIDGLCKLGRLDDAMLNFEQMIDK-GLTP-NVVVYTSLIHALCTYDKWEKAEE 273

Query: 276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGL 335
            +  +  +   P + FF+  LD L K      + +L+D++  IG N  P++I Y+ +I  
Sbjct: 274 LIFEILDQGINPNIVFFNTILDSLCKEGRVIESKKLFDLLGHIGVN--PDVITYSTLIDG 331

Query: 336 LCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 395
            C    +D   +    MV  G  PDS+TY+ +     K  R+ +    F EM  N   P 
Sbjct: 332 YCLAGKMDGAMKLLTGMVSVGLKPDSVTYSTLINGYCKINRMEDALALFKEMESNGVNPD 391

Query: 396 PLNCATAITMLLDADEPEIAIEIWNYILENG 426
            +     +  L        A E++  I E+G
Sbjct: 392 IITYNIILHGLFRTRRTAAAKELYARITESG 422



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 122/262 (46%), Gaps = 12/262 (4%)

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           PD  S+  +++G  KEG+V++A  T+ EM++R   +P+ V  Y + +  L + + +D A+
Sbjct: 9   PDVVSYNTIIDGLFKEGDVDKAYITYHEMLDR-RVSPDAV-TYNSIIAALSKAQAMDRAM 66

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
           + L VM   NCF     +++ +        S  A+ ++  M   G    P+++ YN+++ 
Sbjct: 67  EVLTVMVMPNCFT----YNSIMHGYCSSGQSEKAIGIFRKMCSDGIE--PDVVTYNSLMD 120

Query: 335 LLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
            LC N       + FD MV  G  PD  TY  +         + E+      M++N  Q 
Sbjct: 121 YLCKNGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQL 180

Query: 395 TPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 454
                   I      ++ +  + +++ + + G+ P   +   ++ GL  LGRL D     
Sbjct: 181 DHHVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNF 240

Query: 455 EEMLNR----RILIYEVTMHKL 472
           E+M+++     +++Y   +H L
Sbjct: 241 EQMIDKGLTPNVVVYTSLIHAL 262


>gi|15228825|ref|NP_188906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274241|sp|Q9LUJ4.1|PP248_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22670, mitochondrial; Flags: Precursor
 gi|9279685|dbj|BAB01242.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643142|gb|AEE76663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 562

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 115/460 (25%), Positives = 200/460 (43%), Gaps = 58/460 (12%)

Query: 56  ICEIL--AHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRL 111
           +C+ L     S +D+   L+   ++ T  LV +VL+   +  + A  FF WA    G   
Sbjct: 105 VCDFLNKKDTSHEDVVKELSKCDVVVTESLVLQVLRRFSNGWNQAYGFFIWANSQTGYVH 164

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVM---KEDGVLSLPTFASIFDSYCGAGKYDEAVM 168
           S + +N MVDVLGK   F+ MW  V  M   +E  +++L T + +      +GKY++AV 
Sbjct: 165 SGHTYNAMVDVLGKCRNFDLMWELVNEMNKNEESKLVTLDTMSKVMRRLAKSGKYNKAVD 224

Query: 169 SF-DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG- 226
           +F ++   +GV+ D +A+NSL+ A+ + EN    A E   ++   + PD  +F IL+ G 
Sbjct: 225 AFLEMEKSYGVKTDTIAMNSLMDALVK-ENSIEHAHEVFLKLFDTIKPDARTFNILIHGF 283

Query: 227 ----------------------------------WEKEGNVEEANKTFGEMVERFEWNPE 252
                                             + KEG+    N+   EM E    NP 
Sbjct: 284 CKARKFDDARAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEMREN-GCNP- 341

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
           +V+ Y   + +L + KQV EAL     MK + C P  KF+S+ + IL K      A +++
Sbjct: 342 NVVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILSKTGRFKDAAEIF 401

Query: 313 DIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM---VFHGAFPDSLTYNMIFE 369
           + M   G  +  ++++YN +I    ++   +   R   +M         P+  TY  + +
Sbjct: 402 EDMTNQG--VRRDVLVYNTMISAALHHSRDEMALRLLKRMEDEEGESCSPNVETYAPLLK 459

Query: 370 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
                K++  +    H M+KN+           I  L  + + E A   +   +  G++P
Sbjct: 460 MCCHKKKMKLLGILLHHMVKNDVSIDVSTYILLIRGLCMSGKVEEACLFFEEAVRKGMVP 519

Query: 430 LEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTM 469
            +++   L+  L         +  AE  L  + L+   TM
Sbjct: 520 RDSTCKMLVDELEK-------KNMAEAKLKIQSLVQSKTM 552


>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/379 (23%), Positives = 177/379 (46%), Gaps = 7/379 (1%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G +++ Y  N+M++ L KN + E   + +  M+E GV   + T+ ++ ++YC  G  +EA
Sbjct: 92  GVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEA 151

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLE 225
               D MS  G++  V   N++++ +C+   +  RA   L+ + KI + PD  ++ ILL 
Sbjct: 152 FELMDSMSGKGLKPCVFTYNAIINGLCKT-GKYLRAKGVLDEMLKIGMSPDTATYNILLV 210

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
              +  N+ +A + F EM    +     ++++   +  L +   +D+ALK+ R MK    
Sbjct: 211 ECCRNDNMMDAERIFDEMPS--QGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGL 268

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P    ++  +    +    + A+++ D M+  G  L  +++ YN ++  LC    +   
Sbjct: 269 APDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVL--DVVTYNTILNGLCKEKMLSEA 326

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
              F +M   G FPD  T+  +     K+  +++    F  MI+   +P  +   T I  
Sbjct: 327 DELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDG 386

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 465
                E E   E+WN ++   I P   S   L+ G  N+G +S+  R  +EM+ +     
Sbjct: 387 FCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEAT 446

Query: 466 EVTMHKLKKAFYNESRSMR 484
            +T + + K +     +++
Sbjct: 447 IITCNTIVKGYCRAGNAVK 465



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 148/347 (42%), Gaps = 5/347 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIF-DSYCGAGKYDEAVMSFDVM 173
           +++ ++ +L KNG  +Q     R MK  G+       +I    +C  G   EA+   D M
Sbjct: 239 SFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEM 298

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G   DVV  N++L+ +C+++  +     F    ++ V PD  +F  L+ G+ K+GN+
Sbjct: 299 LEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNM 358

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            +A   F  M++R    P+ V+ Y T +    +G ++++  +    M     +P    + 
Sbjct: 359 NKAVTLFEMMIQR-NLKPD-VVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYG 416

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             ++    +   + A +LWD MV  GF     +I  N ++   C   +      F   M+
Sbjct: 417 ILINGYCNMGCVSEAFRLWDEMVEKGFE--ATIITCNTIVKGYCRAGNAVKADEFLSNML 474

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G  PD +TYN +    IK + +       ++M  +   P  +     +         +
Sbjct: 475 LKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQ 534

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
            A  I   ++E G+ P  ++   L+ G      L +  R  +EML R
Sbjct: 535 EAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQR 581



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 86/379 (22%), Positives = 169/379 (44%), Gaps = 7/379 (1%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           +G+G +   + +N +++ L K G++ +    +  M + G+     T+  +    C     
Sbjct: 159 SGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNM 218

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAI 222
            +A   FD M   GV  D+V+ ++L+  + +      +AL++   +K   + PD   + I
Sbjct: 219 MDAERIFDEMPSQGVVPDLVSFSALIGLLSKN-GCLDQALKYFRDMKNAGLAPDNVIYTI 277

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+ G+ + G + EA K   EM+E  +     V+ Y T L  L + K + EA +    M  
Sbjct: 278 LIGGFCRNGVMSEALKVRDEMLE--QGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTE 335

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
              FP    F+  ++   K  +   AV L+++M  I  NL P+++ YN +I   C   ++
Sbjct: 336 RGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMM--IQRNLKPDVVTYNTLIDGFCKGSEM 393

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
           + V   ++ M+    +P+ ++Y ++         V E  + + EM++  ++ T + C T 
Sbjct: 394 EKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTI 453

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
           +     A     A E  + +L  GI+P   + N L+ G      +        +M N  +
Sbjct: 454 VKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGL 513

Query: 463 LIYEVTMHKLKKAFYNESR 481
           L   +T + +   F  + R
Sbjct: 514 LPDVITYNVILNGFSRQGR 532



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 63/290 (21%), Positives = 117/290 (40%), Gaps = 40/290 (13%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G  L    +N +++ L K     +       M E GV     TF ++ + Y   G  ++
Sbjct: 301 QGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNK 360

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILL 224
           AV  F++M    ++ DVV  N+L+   C+  ++  +  E  N  + + + P+  S+ IL+
Sbjct: 361 AVTLFEMMIQRNLKPDVVTYNTLIDGFCKG-SEMEKVNELWNDMISRRIYPNHISYGILI 419

Query: 225 EGWEKEGNVEEANKTFGEMVER-FEWN--------------------------------- 250
            G+   G V EA + + EMVE+ FE                                   
Sbjct: 420 NGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIV 479

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P+ +  Y T +   I+ + +D A   +  M+     P +  ++  L+   +      A  
Sbjct: 480 PDGI-TYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAEL 538

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPD 360
           +   M+  G N  P+   Y ++I      +++   FR  D+M+  G  PD
Sbjct: 539 IMLKMIERGVN--PDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPD 586


>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 159/355 (44%), Gaps = 5/355 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIF-DSYCGAGKYDE 165
           RG      +++ ++ V  +NG  +Q     R MK  G++      +I  + YC  G   E
Sbjct: 319 RGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSE 378

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A+   D M   G   DVVA N++L+ +C+++        F   V++ V PD  +F  L+ 
Sbjct: 379 ALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIH 438

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G  KEGN+ +A   FG M ++    P+ ++ Y   +    +  ++++A +    M     
Sbjct: 439 GHCKEGNMGKALSLFGIMTQK-NIKPD-IVTYNILIDGFCKTTEMEKANELWNEMISRKI 496

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
           FP    ++  ++    L   + A +LWD M+  G  + P L+  N VI   C + D+   
Sbjct: 497 FPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKG--IKPTLVTCNTVIKGYCRSGDLSKA 554

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
             F  +M+  G  PDS+TYN +    +K + + +     ++M     QP  +     +  
Sbjct: 555 DEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNG 614

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
                  + A  I   ++E GI P  ++   L+ G  +   L +  RF +EML R
Sbjct: 615 FCRQGRMQEAELILRKMIERGIDPDRSTYTTLINGYVSQDNLKEAFRFHDEMLQR 669



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 89/374 (23%), Positives = 174/374 (46%), Gaps = 7/374 (1%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKY 163
           A  G  L+ Y  N+MV+ L K+ + + +   +  M++ G+ + + T+ ++ ++YC  G  
Sbjct: 177 ARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLL 236

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAI 222
            EA    + MS  G++  +   N++++ +C++  +  RA    N +  I + PD  ++  
Sbjct: 237 GEAFEVMNSMSGKGLKPTLFTYNAVINGLCKK-GRYVRAKGVFNEMLSIGLSPDTTTYNT 295

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           LL    +  N  EA   F +M+ R   +P+ ++++ + +    R   +D+AL + R MK 
Sbjct: 296 LLVESCRNNNFLEAKDIFSDMLHR-GVSPD-LISFSSLIGVSSRNGHLDQALMYFRDMKT 353

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
               P    ++  ++   +    + A+++ D M+  G  L  +++ YN ++  LC    +
Sbjct: 354 SGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCAL--DVVAYNTILNGLCKKKLL 411

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
            +    FD+MV  G  PD  T+  +     K   + +    F  M +   +P  +     
Sbjct: 412 ADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNIL 471

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
           I       E E A E+WN ++   I P   S   L+ G  NLG +S+  R  +EM+ + I
Sbjct: 472 IDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGI 531

Query: 463 LIYEVTMHKLKKAF 476
               VT + + K +
Sbjct: 532 KPTLVTCNTVIKGY 545



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 95/417 (22%), Positives = 166/417 (39%), Gaps = 11/417 (2%)

Query: 68  IESALACTGIIPTPDLVHEVLQLSYDSP---SSAVDFFRWAGR-GQRLSPYAWNLMVDVL 123
           +ES ++ +      +LV ++L  SY      +   D F+   R G  +S  A N ++  L
Sbjct: 101 VESLISMSSTCGVDNLVFDLLIRSYVQARKLNEGTDTFKILRRKGFLVSINACNSLLGGL 160

Query: 124 GKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDV 182
            K G  +  W     +   G+ L++ T   + ++ C   K D+       M   G+  D+
Sbjct: 161 VKMGWVDLAWEVYNEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADI 220

Query: 183 VAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFG 241
           V  N+L++A CR E     A E +N +  K + P   ++  ++ G  K+G    A   F 
Sbjct: 221 VTYNTLINAYCR-EGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFN 279

Query: 242 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
           EM+     +P+    Y T L+   R     EA      M      P L  FS+ + +  +
Sbjct: 280 EMLS-IGLSPDTT-TYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSR 337

Query: 302 LNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS 361
                 A+  +  M   G  L+P+ ++Y  +I   C N  +       D+M+  G   D 
Sbjct: 338 NGHLDQALMYFRDMKTSG--LVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDV 395

Query: 362 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 421
           + YN I   L K K + +    F EM++    P      T I           A+ ++  
Sbjct: 396 VAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGI 455

Query: 422 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 478
           + +  I P   + N L+ G      +        EM++R+I    ++   L   + N
Sbjct: 456 MTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCN 512



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 63/290 (21%), Positives = 118/290 (40%), Gaps = 40/290 (13%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G  L   A+N +++ L K             M E GV+    TF ++   +C  G   +
Sbjct: 389 QGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGK 448

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILL 224
           A+  F +M+   ++ D+V  N L+   C+   +  +A E  N  + + + P+  S+AIL+
Sbjct: 449 ALSLFGIMTQKNIKPDIVTYNILIDGFCKT-TEMEKANELWNEMISRKIFPNHISYAILV 507

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHV------------------------------ 254
            G+   G V EA + + EM+ R    P  V                              
Sbjct: 508 NGYCNLGFVSEAFRLWDEMI-RKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGV 566

Query: 255 ----LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
               + Y T +   ++G+ +D+A   +  M+ +   P +  ++  L+   +      A  
Sbjct: 567 GPDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAEL 626

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPD 360
           +   M+  G +  P+   Y  +I    + D++   FRF D+M+  G  PD
Sbjct: 627 ILRKMIERGID--PDRSTYTTLINGYVSQDNLKEAFRFHDEMLQRGFVPD 674


>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
          Length = 878

 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/391 (22%), Positives = 178/391 (45%), Gaps = 5/391 (1%)

Query: 93  DSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFA 151
           DS  +   +     RG       ++ ++  L K    ++    +  M ++GV+    T+ 
Sbjct: 216 DSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYN 275

Query: 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK 211
           SI   YC +G+  EA+ +   M   GVE +VV  +SL++ +C+    T     F +  K+
Sbjct: 276 SILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKR 335

Query: 212 IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD 271
            ++PD  ++  LL+G+  +G + E +     MV R    P+H + +   +    + ++VD
Sbjct: 336 GLEPDIATYRTLLQGYATKGALVEMHALLDLMV-RNGIQPDHHV-FNILICAYAKQEKVD 393

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA 331
           +A+     M+     P +  +   +D+L K      A+  ++ M+  G  L PN+I+Y +
Sbjct: 394 QAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEG--LTPNIIVYTS 451

Query: 332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
           +I  LC  D  D       +M+  G   +++ +N I +   K  RV E EK F  M++  
Sbjct: 452 LIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIG 511

Query: 392 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 451
            +P  +   T I     A + + A ++   ++  G+ P   +   L+ G   + R+ D  
Sbjct: 512 VKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDAL 571

Query: 452 RFAEEMLNRRILIYEVTMHKLKKAFYNESRS 482
              +EM++  +    +T + + +  ++  R+
Sbjct: 572 ALFKEMVSSGVSPNIITYNIILQGLFHTRRT 602



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 143/319 (44%), Gaps = 10/319 (3%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKED-GVLSLP---TFASIFDSYCGAGKYDEAVMS 169
           +++N ++  L    R ++    + +M +D G  S P   ++ ++ + +   G  D+A  +
Sbjct: 164 FSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYST 223

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWE 228
           +  M   G+  DVV  +S+++A+C+ +    +A+E LN  VK  V PD  ++  +L G+ 
Sbjct: 224 YHEMLDRGILPDVVTYSSIIAALCKAQ-AMDKAMEVLNTMVKNGVMPDCMTYNSILHGYC 282

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
             G  +EA  T  +M  R +    +V+ Y + +  L +  +  EA K    M      P 
Sbjct: 283 SSGQPKEAIGTLKKM--RSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPD 340

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
           +  +   L              L D+MV  G  + P+  ++N +I      + VD     
Sbjct: 341 IATYRTLLQGYATKGALVEMHALLDLMVRNG--IQPDHHVFNILICAYAKQEKVDQAMLV 398

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
           F +M  HG  P+ + Y  + + L K+  V +   +F +MI     P  +   + I  L  
Sbjct: 399 FSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCT 458

Query: 409 ADEPEIAIEIWNYILENGI 427
            D+ + A E+   +L+ GI
Sbjct: 459 CDKWDKAEELILEMLDRGI 477



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 125/287 (43%), Gaps = 12/287 (4%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF-LN 207
           T+A +    C AG+ D    +   +   G   D +    LL  +C  + +TS A++  L 
Sbjct: 94  TYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLC-ADKRTSDAMDIVLR 152

Query: 208 RVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLITLI 265
           R+ ++   PD  S+  LL+G   E   +EA +    M  +R   +P  V++Y T L    
Sbjct: 153 RMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFF 212

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN 325
           +    D+A      M      P +  +S+ +  L K      A+++ + MV  G  +MP+
Sbjct: 213 KEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNG--VMPD 270

Query: 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 385
            + YN+++   C++           +M   G  P+ +TY+ +   L KN R  E  K F 
Sbjct: 271 CMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFD 330

Query: 386 EMIKNEWQPTPLNCATAITMLLDADEPEIAIE---IWNYILENGILP 429
            M K   +P   + AT  T+L         +E   + + ++ NGI P
Sbjct: 331 SMTKRGLEP---DIATYRTLLQGYATKGALVEMHALLDLMVRNGIQP 374



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 132/304 (43%), Gaps = 12/304 (3%)

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI----VDPDGDS 219
           ++A   FD +   G    +  +N  L+ + R     + A+   NR+ +     V P   +
Sbjct: 37  EDARHVFDELLRRGRGASIYGLNRALADVARHS--PAAAVSRYNRMARAGAGKVTPTVHT 94

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKF-L 277
           +AIL+    + G ++      G +V++ F  +    + +   L  L   K+  +A+   L
Sbjct: 95  YAILIGCCCRAGRLDLGFAALGNVVKKGFRVD---AITFTPLLKGLCADKRTSDAMDIVL 151

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG-IGFNLMPNLIMYNAVIGLL 336
           R M    C P +  ++N L  L   N S  A++L  +M    G    P+++ YN V+   
Sbjct: 152 RRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGF 211

Query: 337 CNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 396
               D D  +  + +M+  G  PD +TY+ I   L K + + +  +  + M+KN   P  
Sbjct: 212 FKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDC 271

Query: 397 LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 456
           +   + +     + +P+ AI     +  +G+ P   + + L+  L   GR ++ R+  + 
Sbjct: 272 MTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDS 331

Query: 457 MLNR 460
           M  R
Sbjct: 332 MTKR 335



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 65/317 (20%), Positives = 128/317 (40%), Gaps = 40/317 (12%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +N+++    K  + +Q       M++ G+  ++  + ++ D  C +G  D+A++ F+ 
Sbjct: 377 HVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQ 436

Query: 173 MSMHGVEQDVVAVNSLLSAIC---RQENQTSRALEFLNR--------------------- 208
           M   G+  +++   SL+  +C   + +      LE L+R                     
Sbjct: 437 MIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGR 496

Query: 209 -----------VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
                      V+  V PD  ++  L++G    G ++EA K    MV      P+ ++ Y
Sbjct: 497 VIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVS-VGVKPD-IVTY 554

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317
            T +    R  ++D+AL   + M      P +  ++  L  L     +  A +L+  +  
Sbjct: 555 GTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITK 614

Query: 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
            G  L   L  YN ++  LC N+  D   R F  +       ++ T+N++   L+K  R+
Sbjct: 615 SGTQL--ELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRM 672

Query: 378 HEVEKFFHEMIKNEWQP 394
            E +  F     N   P
Sbjct: 673 DEAKDLFAAHSANGLVP 689



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 35/182 (19%), Positives = 74/182 (40%), Gaps = 9/182 (4%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++D     G+ ++    +  M   GV   + T+ ++ + YC   + D+A+  F  M 
Sbjct: 519 YNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMV 578

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             GV  +++  N +L  +       +    +++  K     +  ++ I+L G  K    +
Sbjct: 579 SSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTD 638

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLI---TLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           EA + F  +        +  L   TF I    L++  ++DEA             P ++ 
Sbjct: 639 EALRMFQNLCL-----TDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRT 693

Query: 292 FS 293
           +S
Sbjct: 694 YS 695


>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 166/379 (43%), Gaps = 11/379 (2%)

Query: 102 FRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGA 160
            R AG G  +  Y  N +V    + G  +     V +M+E G+  +L TF S+ +  C A
Sbjct: 216 MRGAGCGPNVVTY--NTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCKA 273

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSF 220
           GK ++A   FD M   G+  D V+ N+L+   C+          F    +K + PD  +F
Sbjct: 274 GKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTF 333

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
             L+    K GN+E A     +M ER     E  + +   +    +   +D+AL  +R M
Sbjct: 334 TSLIHVMCKAGNLERAVTLVRQMRERGLQMNE--VTFTALIDGFCKKGFLDDALLAVRGM 391

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
           K     P++  ++  ++    +     A +L   M   G  L P+++ Y+ +I   C N 
Sbjct: 392 KQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKG--LKPDVVTYSTIISAYCKNC 449

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
           D  + F    QM+  G  PD++TY+ +   L   KR+ +    F  MIK   QP      
Sbjct: 450 DTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYT 509

Query: 401 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           + I         E A+ + + +++ G+LP   + + L+ GL    R  + ++   ++ + 
Sbjct: 510 SLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHE 569

Query: 461 RIL----IYEVTMHKLKKA 475
             +     Y+  MH  +KA
Sbjct: 570 DPIPANTKYDALMHCCRKA 588



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 79/374 (21%), Positives = 150/374 (40%), Gaps = 55/374 (14%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG +++   +  ++D   K G  +    AVR MK+  +  S+  + ++ + YC  G+ DE
Sbjct: 359 RGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDE 418

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQ------------------------------ 195
           A      M   G++ DVV  ++++SA C+                               
Sbjct: 419 ARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIR 478

Query: 196 ----ENQTSRA-LEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
               E + S A + F N +K  + PD  ++  L++G  KEGNVE A     +MV+     
Sbjct: 479 VLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVL- 537

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT---------------LKFFSNA 295
           P+ V+ Y   +  L +  +  EA + L  +  E+  P                LK     
Sbjct: 538 PD-VVTYSVLINGLSKSARAMEAQQLLFKLYHEDPIPANTKYDALMHCCRKAELKSVLAL 596

Query: 296 LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
           L           A +++  M+   +NL  +  +Y+ +I   C   +V     F  QM+  
Sbjct: 597 LKGFCMKGLMNEADKVYQSMLDRNWNL--DGSVYSVLIHGHCRAGNVMKALSFHKQMLQG 654

Query: 356 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 415
           G  P+S +   +   L +N  V E ++   +++              I + L+    +  
Sbjct: 655 GFAPNSTSTISLIRGLFENGMVVEADQVIQQLLNYCSLADAEASKALIDLNLNEGNVDAV 714

Query: 416 IEIWNYILENGILP 429
           +++ + + ++G+LP
Sbjct: 715 LDVLHGMAKDGLLP 728



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 94/232 (40%), Gaps = 8/232 (3%)

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
           VLAY   L+ L     +  A +F   M  +   P +  ++  +  L        A+ +  
Sbjct: 156 VLAYNAVLLAL-SDASLTSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSILR 214

Query: 314 IMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 373
            M G G    PN++ YN ++       +VD   R    M   G  P+ +T+N +   + K
Sbjct: 215 DMRGAGCG--PNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCK 272

Query: 374 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 433
             ++ +  K F EM++    P  ++  T +     A     A+ ++  + + GI+P   +
Sbjct: 273 AGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVT 332

Query: 434 ANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL-----KKAFYNES 480
              L+  +   G L        +M  R + + EVT   L     KK F +++
Sbjct: 333 FTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDA 384


>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 821

 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 156/351 (44%), Gaps = 7/351 (1%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y++N ++  LGK        N    +   GV  SL TF ++ +  C  GK  EAV+ F+ 
Sbjct: 163 YSFNTLLLQLGKFDMVTSAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNK 222

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEG 231
           +    +  D     SL+   CR   +  +A E  +R VK   +P+  +++ L+ G   EG
Sbjct: 223 IFQFDLCPDAFTYTSLILGHCRNR-KLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEG 281

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            + EA     EM E+    P  V  Y   + +L    +VD+A+  +R M  + C P+++ 
Sbjct: 282 RIGEAMDMLEEMTEK-GIEPT-VYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQT 339

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           ++  +  L +      A+ ++  M+  G  L+PN + YNA+I  LC         + FD 
Sbjct: 340 YTAIISGLFRAGKMELAIGMYHKMLKEG--LVPNTVTYNALINELCTEGRFGIALKIFDW 397

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M  HG   ++ TYN I + L     + +    F++M+K+   PT +   T I   L    
Sbjct: 398 MEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLIVENLKRGY 457

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
              A      + E+   P E +  EL+ G    G+L     F  EML   I
Sbjct: 458 LNNATRFLYMMKESNCEPDERTYCELISGFCKGGKLDSATSFFYEMLKCGI 508



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 85/368 (23%), Positives = 157/368 (42%), Gaps = 7/368 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G   + Y + + +  L   GR +   N VR M + G   S+ T+ +I      AGK + 
Sbjct: 296 KGIEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMEL 355

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILL 224
           A+  +  M   G+  + V  N+L++ +C  E +   AL+  + ++      +  ++  ++
Sbjct: 356 AIGMYHKMLKEGLVPNTVTYNALINELC-TEGRFGIALKIFDWMEGHGTLANAQTYNQII 414

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           +G     ++E+A   F +M++  +     V+ Y T ++  ++   ++ A +FL +MK  N
Sbjct: 415 KGLFGMDDIEKAMVVFNKMLK--DGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESN 472

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
           C P  + +   +    K      A   +  M+  G +  PN   Y A+I   C    +D 
Sbjct: 473 CEPDERTYCELISGFCKGGKLDSATSFFYEMLKCGIS--PNQWTYTAMIDGYCKEGKIDV 530

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
               F++M  +G      TYN I   L K  R  E EKF  +M +   QP  +   + I 
Sbjct: 531 ALSLFERMEENGCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLIN 590

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 464
            L       +A +I++ + +   LP   +   L+ GL   G++    R  E      I  
Sbjct: 591 GLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAAERLTENGCEPTIDT 650

Query: 465 YEVTMHKL 472
           Y   +  L
Sbjct: 651 YSTLVSGL 658



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 100/238 (42%), Gaps = 4/238 (1%)

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
           ++ T L+ L +   V  A      +      P+L  F+  ++IL K      AV +++ +
Sbjct: 164 SFNTLLLQLGKFDMVTSAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKI 223

Query: 316 VGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 375
               F+L P+   Y ++I   C N  +D  F  FD+MV  G  P+S+TY+ +   L    
Sbjct: 224 --FQFDLCPDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEG 281

Query: 376 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 435
           R+ E      EM +   +PT       I+ L D    + AI +   + + G  P   +  
Sbjct: 282 RIGEAMDMLEEMTEKGIEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYT 341

Query: 436 ELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLE 491
            ++ GL   G++        +ML   ++   VT + L      E R      IFD +E
Sbjct: 342 AIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELCTEGRFGIALKIFDWME 399



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/305 (21%), Positives = 131/305 (42%), Gaps = 18/305 (5%)

Query: 97  SAVDFFRWAGRGQRLSPYAWNL--MVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASI 153
           SA  FF +      +SP  W    M+D   K G+ +   +    M+E+G   S+ T+ +I
Sbjct: 495 SATSFF-YEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYNAI 553

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKI 212
                   ++ EA      M+  G++ + +   SL++ +C+    T+ A +  + + KK 
Sbjct: 554 ISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKN-TATNLAFKIFHEMEKKN 612

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN--PEHVLAYETFLITLIRGKQV 270
             P+  ++  L+ G  +EG V+ A        ER   N     +  Y T +  L R  + 
Sbjct: 613 CLPNAHTYTSLIYGLCQEGKVDAA--------ERLTENGCEPTIDTYSTLVSGLCREGRS 664

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYN 330
           +EA + +  MK +   P+++ + + L    K      A++++++M   GF   P+L +Y 
Sbjct: 665 NEASQLVENMKEKGLSPSMEIYCSLLVAHCKSLKVDCALEIFNLMAVKGFQ--PHLFIYK 722

Query: 331 AVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 390
            +I  LC     +     F  ++      D + + ++ + L++        KF + M   
Sbjct: 723 VLICALCGVSRAEEALNIFQSLLKKQWNSDLIVWTVLVDGLLQEGDSDLCMKFLYLMESR 782

Query: 391 EWQPT 395
              P+
Sbjct: 783 NCTPS 787



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/299 (22%), Positives = 121/299 (40%), Gaps = 10/299 (3%)

Query: 185 VNSLLSAICRQENQTSRALEFLNRVKK----IVDPDGDSFAILLEGWEKEGNVEEANKTF 240
           V  L+   CR E++  R  +FL+ +      +      SF  LL    K   V  A   +
Sbjct: 126 VRILMIKACRNEDELKRVTDFLHGISSSDSGLFGFTLYSFNTLLLQLGKFDMVTSAQNVY 185

Query: 241 GEMVERFEWNPEHVLAYETFLITLIRGKQVDEA-LKFLRVMKGENCFPTLKFFSNALDIL 299
            ++          +L + T +  L +  +V EA L F ++ + + C P    +++ +   
Sbjct: 186 AQIFS--SGVKPSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDLC-PDAFTYTSLILGH 242

Query: 300 VKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFP 359
            +      A +++D MV  G N  PN + Y+ +I  LCN   +       ++M   G  P
Sbjct: 243 CRNRKLDKAFEVFDRMVKDGCN--PNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEP 300

Query: 360 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 419
              TY +    L    RV +       M K    P+       I+ L  A + E+AI ++
Sbjct: 301 TVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMY 360

Query: 420 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 478
           + +L+ G++P   + N L+  L   GR     +  + M     L    T +++ K  + 
Sbjct: 361 HKMLKEGLVPNTVTYNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFG 419



 Score = 45.4 bits (106), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 5/165 (3%)

Query: 130 EQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSL 188
           E   +A   + E+G   ++ T++++    C  G+ +EA    + M   G+   +    SL
Sbjct: 630 EGKVDAAERLTENGCEPTIDTYSTLVSGLCREGRSNEASQLVENMKEKGLSPSMEIYCSL 689

Query: 189 LSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF 247
           L A C+   +   ALE  N +  K   P    + +L+         EEA   F  ++++ 
Sbjct: 690 LVAHCKSL-KVDCALEIFNLMAVKGFQPHLFIYKVLICALCGVSRAEEALNIFQSLLKK- 747

Query: 248 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +WN + ++ +   +  L++    D  +KFL +M+  NC P+L  +
Sbjct: 748 QWNSD-LIVWTVLVDGLLQEGDSDLCMKFLYLMESRNCTPSLHTY 791


>gi|356546852|ref|XP_003541836.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15200-like [Glycine max]
          Length = 481

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 110/439 (25%), Positives = 191/439 (43%), Gaps = 17/439 (3%)

Query: 28  TSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEV 87
           T  N  + + PRF     A +I +    + +      ++ +  AL   G     DLV +V
Sbjct: 18  TFSNNVKTSTPRFVHSCPATFIQN----LLKFRRDKPTEQLYRALDQCGFDLNHDLVLDV 73

Query: 88  LQLSYDSPSSAVDFFRWAGR---GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM-KEDG 143
           L+        A  FF WA +   G + S    N +VD+LGK  RF+++   +  M K + 
Sbjct: 74  LRRHRSDWRPAHVFFNWASKTTTGYQPSSDVCNEIVDILGKMQRFQELHQVLDEMSKREE 133

Query: 144 VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRAL 203
           +L    FA++   + GA K DEA+  F      G+E +  A  +LL  +CR ++      
Sbjct: 134 LLDEAVFATLVRRFVGAHKVDEAIQLFYRRKEFGLELNSEAFRTLLMWLCRYKHVEDAEA 193

Query: 204 EFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT 263
            F N VKK +  D   + ++L GW   GN  EA + + ++V      P+ +  Y TF+  
Sbjct: 194 LFHNSVKKGLRADIKMWNVILNGWCVLGNSHEAKRVWRDIVAS-PCKPD-IFTYATFIKA 251

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLM 323
           L +  ++  ALK  R M  +   P +   +  +D L        A++++  M   G    
Sbjct: 252 LTKKGKLGTALKLFRGMWDKGGKPDVVICNCIIDALCFKKRIPEALEIFCDMSERGCE-- 309

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH--GAFPDSLTYNMIFECLIKNKRVHEVE 381
           PN+  YN++I  +C    +  V+   D+M        P+++TY  + + L   K   EV 
Sbjct: 310 PNVATYNSLIKYMCKIQRMKKVYELVDEMERKKGSCLPNAVTYCYLLKSL---KEPGEVC 366

Query: 382 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 441
           +    M +N            + + +  D+ +   + W  +  NG  P   S   ++   
Sbjct: 367 RVLERMERNGCGMNDDVYNMVLRLYMKWDDGDGVRKTWEEMERNGWGPDRRSYTIMIHEN 426

Query: 442 RNLGRLSDVRRFAEEMLNR 460
              GR+ D  R+ EEM+++
Sbjct: 427 FEKGRVKDAVRYLEEMISK 445



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 89/228 (39%), Gaps = 4/228 (1%)

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           +E ++   EM +R E   E V A  T +   +   +VDEA++     K        + F 
Sbjct: 119 QELHQVLDEMSKREELLDEAVFA--TLVRRFVGAHKVDEAIQLFYRRKEFGLELNSEAFR 176

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             L  L +      A  L+   V  G  L  ++ M+N ++   C   +     R +  +V
Sbjct: 177 TLLMWLCRYKHVEDAEALFHNSVKKG--LRADIKMWNVILNGWCVLGNSHEAKRVWRDIV 234

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
                PD  TY    + L K  ++    K F  M     +P  + C   I  L       
Sbjct: 235 ASPCKPDIFTYATFIKALTKKGKLGTALKLFRGMWDKGGKPDVVICNCIIDALCFKKRIP 294

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461
            A+EI+  + E G  P  A+ N L+  +  + R+  V    +EM  ++
Sbjct: 295 EALEIFCDMSERGCEPNVATYNSLIKYMCKIQRMKKVYELVDEMERKK 342


>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 791

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 172/371 (46%), Gaps = 11/371 (2%)

Query: 109 QRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +R+SP    ++ ++  L K    ++    +  M ++GV+ +  T+ SI   YC + +  E
Sbjct: 225 RRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKE 284

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A+     M   GVE DVV  NSL+  +C+    T     F +  K+ ++PD  ++  LL+
Sbjct: 285 AIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQ 344

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+  +G + E +     MV R   +P+H + +   +    + ++VDEA+     M+    
Sbjct: 345 GYATKGALVEMHALLDLMV-RNGIHPDHHV-FNILICAYAKQEKVDEAMLVFSKMRQHGL 402

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P +  +   + IL K      A+  ++ M+  G  L PN+I+Y ++I  LC  D  D  
Sbjct: 403 NPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEG--LTPNIIVYTSLIHSLCIFDKWDKA 460

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
                +M+  G   +++ +N I     K  RV E EK F  M++   +P  +  +T I  
Sbjct: 461 EELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDG 520

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR----R 461
              A + + A ++ + +   G+ P   + N L+ G   + R+ D     +EM++      
Sbjct: 521 YCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPN 580

Query: 462 ILIYEVTMHKL 472
           I+ Y + +  L
Sbjct: 581 IITYNIILQGL 591



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 90/403 (22%), Positives = 174/403 (43%), Gaps = 12/403 (2%)

Query: 45  DAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQ--LSYDSPSSAVDFF 102
           D    SS    +C+  A   + ++ + +   G++P     + +L    S + P  A+ F 
Sbjct: 230 DVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFL 289

Query: 103 RWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           +   R   + P    +N ++D L KNGR  +       M + G+   + T+ ++   Y  
Sbjct: 290 KKM-RSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYAT 348

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
            G   E     D+M  +G+  D    N L+ A  +QE      L F    +  ++P+  +
Sbjct: 349 KGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVT 408

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF-LR 278
           +  ++    K G+V++A   F +M++  E    +++ Y + + +L    + D+A +  L 
Sbjct: 409 YGAVIGILCKSGSVDDAMLYFEQMID--EGLTPNIIVYTSLIHSLCIFDKWDKAEELILE 466

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
           ++    C  T+ FF++ +    K      + +L+D+MV IG    PN+I Y+ +I   C 
Sbjct: 467 MLDRGICLNTI-FFNSIIHSHCKEGRVIESEKLFDLMVRIGVK--PNVITYSTLIDGYCL 523

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
              +D   +    M   G  PD +TYN +     +  R+ +    F EM+ +   P  + 
Sbjct: 524 AGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIIT 583

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 441
               +  L        A E++  I ++G     ++ N +L GL
Sbjct: 584 YNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGL 626



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 127/290 (43%), Gaps = 12/290 (4%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           ++ T+  +    C AG+ D    +   +   G   + +    LL  +C  + +TS A++ 
Sbjct: 86  TVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLC-ADKRTSDAMDI 144

Query: 206 -LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLI 262
            L R+ ++   PD  S  ILL+G   E   +EA +    M  +R   +   V++Y T + 
Sbjct: 145 VLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVIN 204

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL 322
              +    D+A      M      P +  +S+ +  L K      A+++   MV  G  +
Sbjct: 205 GFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNG--V 262

Query: 323 MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
           MPN + YN+++   C+++       F  +M   G  PD +TYN + + L KN R  E  K
Sbjct: 263 MPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARK 322

Query: 383 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE---IWNYILENGILP 429
            F  M K   +P   + AT  T+L         +E   + + ++ NGI P
Sbjct: 323 IFDSMTKRGLEP---DIATYCTLLQGYATKGALVEMHALLDLMVRNGIHP 369



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/320 (21%), Positives = 138/320 (43%), Gaps = 11/320 (3%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +N+++    K  + ++       M++ G+  ++ T+ ++    C +G  D+A++ F+ 
Sbjct: 372 HVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQ 431

Query: 173 MSMHGVEQDVVAVNSLLSAIC---RQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK 229
           M   G+  +++   SL+ ++C   + +      LE L+R    +  +   F  ++    K
Sbjct: 432 MIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRG---ICLNTIFFNSIIHSHCK 488

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
           EG V E+ K F  MV R    P +V+ Y T +       ++DEA K L  M      P  
Sbjct: 489 EGRVIESEKLFDLMV-RIGVKP-NVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDC 546

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
             ++  ++   +++    A+ L+  MV  G +  PN+I YN ++  L +          +
Sbjct: 547 VTYNTLINGYCRVSRMDDALALFKEMVSSGVS--PNIITYNIILQGLFHTRRTAAAKELY 604

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 409
             +   G   +  TYN+I   L KN    E  + F  +   + Q         I  LL  
Sbjct: 605 VGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKV 664

Query: 410 DEPEIAIEIWNYILENGILP 429
              + A +++     NG++P
Sbjct: 665 GRNDEAKDLFVAFSSNGLVP 684



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 70/306 (22%), Positives = 131/306 (42%), Gaps = 16/306 (5%)

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI----VDPDGDS 219
           ++A   FD +   G    +  +N  L+ + R     + A+   NR+ +     V P   +
Sbjct: 32  EDARHVFDELLRRGRGASIYGLNRALADVARH--SPAAAVSRYNRMARAGAGKVTPTVHT 89

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF-LR 278
           + IL+    + G ++      G +V++  +  E  + +   L  L   K+  +A+   LR
Sbjct: 90  YGILIGCCCRAGRLDLGFAALGNVVKK-GFRVE-AITFTPLLKGLCADKRTSDAMDIVLR 147

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG-IGFNLMPNLIMYNAVIGLLC 337
            M   +C P +   +  L  L   N S  A++L  +M    G    P+++ Y  VI    
Sbjct: 148 RMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFF 207

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
              D D  +  + +M+     PD +TY+ I   L K + + +  +    M+KN   P   
Sbjct: 208 KEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMP--- 264

Query: 398 NCATAITML---LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 454
           NC T  ++L     +++P+ AI     +  +G+ P   + N L+  L   GR ++ R+  
Sbjct: 265 NCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIF 324

Query: 455 EEMLNR 460
           + M  R
Sbjct: 325 DSMTKR 330


>gi|225461528|ref|XP_002282646.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15200-like [Vitis vinifera]
          Length = 546

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 105/403 (26%), Positives = 183/403 (45%), Gaps = 18/403 (4%)

Query: 63  ASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYA-----WN 117
           +S  +IE AL    +  T DLV +VL+        A  FF WA R    S Y+      N
Sbjct: 100 SSVSEIEGALHQCRLSLTDDLVLDVLKRHRSDWRPAYVFFNWASRCGIESGYSPGCGVHN 159

Query: 118 LMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176
            ++D+LG+  RF +M      M K  G+++  TF  + + Y  A K +EAV  F+     
Sbjct: 160 EILDILGRMRRFHEMTQLFDEMSKRKGLVNERTFGVLLNRYAAAHKTEEAVKIFNKRKGL 219

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVEE 235
           G E D++A  +LL ++CR ++      EFL   KK    PD  S  ++L GW   G++ E
Sbjct: 220 GFELDLIAFQTLLMSLCRYKH--VEMAEFLFHSKKNEFPPDIKSMNVILNGWCVLGSLRE 277

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
           A + + +++   +  P+    Y  F+ +L +  ++  A+K  + M  + C P +   +  
Sbjct: 278 AKRFWNDIITS-KCKPDK-FTYGIFINSLTKAGKLSTAVKLFQAMWEKGCNPDVAICNCI 335

Query: 296 LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
           +D L        A+++   M     +  P++  YN++I  LC     + V+   D M   
Sbjct: 336 IDALCFKKRIPEALEVLREMNER--DCQPDVATYNSLIKHLCKIQRFEKVYELLDDMEQK 393

Query: 356 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 415
           G  P++ TY  +   L   K+  EV      M +N  +    +C   I  L      E+ 
Sbjct: 394 GCLPNARTYGYL---LKSTKKPEEVPGILERMERNGCRMNS-DCYNLILKLYMDWGYELK 449

Query: 416 IE-IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           +    + +  NG+ P + +   ++ GL + GR+ D   + ++M
Sbjct: 450 LRSTLDEMERNGMGPDQRTYTIMIHGLYDKGRMDDALSYFKQM 492



 Score = 40.4 bits (93), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 44/210 (20%), Positives = 88/210 (41%), Gaps = 15/210 (7%)

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
           +   L  L R ++  E  +    M         + F   L+     + +  AV++++   
Sbjct: 158 HNEILDILGRMRRFHEMTQLFDEMSKRKGLVNERTFGVLLNRYAAAHKTEEAVKIFNKRK 217

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAF----PDSLTYNMIFE--C 370
           G+GF L  +LI +  ++  LC    V+       + +FH       PD  + N+I    C
Sbjct: 218 GLGFEL--DLIAFQTLLMSLCRYKHVE-----MAEFLFHSKKNEFPPDIKSMNVILNGWC 270

Query: 371 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 430
           ++ + R  E ++F++++I ++ +P        I  L  A +   A++++  + E G  P 
Sbjct: 271 VLGSLR--EAKRFWNDIITSKCKPDKFTYGIFINSLTKAGKLSTAVKLFQAMWEKGCNPD 328

Query: 431 EASANELLVGLRNLGRLSDVRRFAEEMLNR 460
            A  N ++  L    R+ +      EM  R
Sbjct: 329 VAICNCIIDALCFKKRIPEALEVLREMNER 358


>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 762

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 172/371 (46%), Gaps = 11/371 (2%)

Query: 109 QRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +R+SP    ++ ++  L K    ++    +  M ++GV+ +  T+ SI   YC + +  E
Sbjct: 225 RRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKE 284

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A+     M   GVE DVV  NSL+  +C+    T     F +  K+ ++PD  ++  LL+
Sbjct: 285 AIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQ 344

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+  +G + E +     MV R   +P+H + +   +    + ++VDEA+     M+    
Sbjct: 345 GYATKGALVEMHALLDLMV-RNGIHPDHHV-FNILICAYAKQEKVDEAMLVFSKMRQHGL 402

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P +  +   + IL K      A+  ++ M+  G  L PN+I+Y ++I  LC  D  D  
Sbjct: 403 NPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEG--LTPNIIVYTSLIHSLCIFDKWDKA 460

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
                +M+  G   +++ +N I     K  RV E EK F  M++   +P  +  +T I  
Sbjct: 461 EELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDG 520

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR----R 461
              A + + A ++ + +   G+ P   + N L+ G   + R+ D     +EM++      
Sbjct: 521 YCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPN 580

Query: 462 ILIYEVTMHKL 472
           I+ Y + +  L
Sbjct: 581 IITYNIILQGL 591



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 90/403 (22%), Positives = 174/403 (43%), Gaps = 12/403 (2%)

Query: 45  DAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQ--LSYDSPSSAVDFF 102
           D    SS    +C+  A   + ++ + +   G++P     + +L    S + P  A+ F 
Sbjct: 230 DVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFL 289

Query: 103 RWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           +   R   + P    +N ++D L KNGR  +       M + G+   + T+ ++   Y  
Sbjct: 290 KKM-RSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYAT 348

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
            G   E     D+M  +G+  D    N L+ A  +QE      L F    +  ++P+  +
Sbjct: 349 KGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVT 408

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF-LR 278
           +  ++    K G+V++A   F +M++  E    +++ Y + + +L    + D+A +  L 
Sbjct: 409 YGAVIGILCKSGSVDDAMLYFEQMID--EGLTPNIIVYTSLIHSLCIFDKWDKAEELILE 466

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
           ++    C  T+ FF++ +    K      + +L+D+MV IG    PN+I Y+ +I   C 
Sbjct: 467 MLDRGICLNTI-FFNSIIHSHCKEGRVIESEKLFDLMVRIGVK--PNVITYSTLIDGYCL 523

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
              +D   +    M   G  PD +TYN +     +  R+ +    F EM+ +   P  + 
Sbjct: 524 AGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIIT 583

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 441
               +  L        A E++  I ++G     ++ N +L GL
Sbjct: 584 YNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGL 626



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 127/290 (43%), Gaps = 12/290 (4%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           ++ T+  +    C AG+ D    +   +   G   + +    LL  +C  + +TS A++ 
Sbjct: 86  TVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLC-ADKRTSDAMDI 144

Query: 206 -LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLI 262
            L R+ ++   PD  S  ILL+G   E   +EA +    M  +R   +   V++Y T + 
Sbjct: 145 VLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVIN 204

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL 322
              +    D+A      M      P +  +S+ +  L K      A+++   MV  G  +
Sbjct: 205 GFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNG--V 262

Query: 323 MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
           MPN + YN+++   C+++       F  +M   G  PD +TYN + + L KN R  E  K
Sbjct: 263 MPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARK 322

Query: 383 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE---IWNYILENGILP 429
            F  M K   +P   + AT  T+L         +E   + + ++ NGI P
Sbjct: 323 IFDSMTKRGLEP---DIATYCTLLQGYATKGALVEMHALLDLMVRNGIHP 369



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/317 (19%), Positives = 129/317 (40%), Gaps = 40/317 (12%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +N+++    K  + ++       M++ G+  ++ T+ ++    C +G  D+A++ F+ 
Sbjct: 372 HVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQ 431

Query: 173 MSMHGVEQDVVAVNSLLSAIC---RQENQTSRALEFLNR--------------------- 208
           M   G+  +++   SL+ ++C   + +      LE L+R                     
Sbjct: 432 MIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGR 491

Query: 209 -----------VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
                      V+  V P+  +++ L++G+   G ++EA K    M       P+ V  Y
Sbjct: 492 VIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFS-VGMKPDCV-TY 549

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317
            T +    R  ++D+AL   + M      P +  ++  L  L     +  A +L+  +  
Sbjct: 550 NTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITK 609

Query: 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
            G  L   L  YN ++  LC N+  D   R F  +       ++ T+N++   L+K  R 
Sbjct: 610 SGTQL--ELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRN 667

Query: 378 HEVEKFFHEMIKNEWQP 394
            E +  F  +  N   P
Sbjct: 668 DEAKDLFAALSANGLVP 684



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 131/306 (42%), Gaps = 16/306 (5%)

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI----VDPDGDS 219
           ++A   F+ +   G    +  +N  L+ + R     + A+   NR+ +     V P   +
Sbjct: 32  EDARHVFEELLRRGRGASIYGLNRALADVARH--SPAAAVSRYNRMARAGAGKVTPTVHT 89

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF-LR 278
           + IL+    + G ++      G +V++  +  E  + +   L  L   K+  +A+   LR
Sbjct: 90  YGILIGCCCRAGRLDLGFAALGNVVKK-GFRVE-AITFTPLLKGLCADKRTSDAMDIVLR 147

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG-IGFNLMPNLIMYNAVIGLLC 337
            M   +C P +   +  L  L   N S  A++L  +M    G    P+++ Y  VI    
Sbjct: 148 RMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFF 207

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
              D D  +  + +M+     PD +TY+ I   L K + + +  +    M+KN   P   
Sbjct: 208 KEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMP--- 264

Query: 398 NCATAITML---LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 454
           NC T  ++L     +++P+ AI     +  +G+ P   + N L+  L   GR ++ R+  
Sbjct: 265 NCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIF 324

Query: 455 EEMLNR 460
           + M  R
Sbjct: 325 DSMTKR 330


>gi|297721877|ref|NP_001173302.1| Os03g0201300 [Oryza sativa Japonica Group]
 gi|108706707|gb|ABF94502.1| salt-inducible protein, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674288|dbj|BAH92030.1| Os03g0201300 [Oryza sativa Japonica Group]
          Length = 796

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 107/441 (24%), Positives = 191/441 (43%), Gaps = 18/441 (4%)

Query: 49  ISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSS----AVDFFRW 104
           +S+ AR+    L H ++  + S     G+ P+    + VL     SPS+    ++D FR 
Sbjct: 142 LSAYARLR---LPHLAAQLLHSLRRRRGVRPSLQAANAVLSALSRSPSTLPQASLDVFRS 198

Query: 105 AGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAG 161
                RL P  Y +NL+V      G        +  M+  G+     T+ ++ +++C  G
Sbjct: 199 LIE-LRLHPNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKG 257

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE--NQTSRALEFLNRVKKIVDPDGDS 219
              EA      M   G+       N+L+SA  R     Q ++ +E +       +PD  +
Sbjct: 258 MLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYG--FEPDLRT 315

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           + +L  G  + G V+EA +   EM ER       V+ Y T +    + +   +AL+ L  
Sbjct: 316 YNVLAVGLCQAGKVDEAFRLKDEM-ERLSTALPDVVTYNTLVDACFKWRCSSDALRLLEE 374

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
           M+ +   PTL   +  +  L K      A+   + +   G  L P++I YN +I   C  
Sbjct: 375 MRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEG--LAPDVITYNTLIDAYCKA 432

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
            +V   F   D+MV  G   D+ T N +   L K KR  + E+  H   +  + P  ++ 
Sbjct: 433 GNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSY 492

Query: 400 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
            T +        PE A+ +W+ ++E  ++P  ++ N L+ GL  + RL +      E++ 
Sbjct: 493 GTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNELVE 552

Query: 460 RRILIYEVTMHKLKKAFYNES 480
           + ++  E T + +  A+  E 
Sbjct: 553 KGLVPDETTYNIIIHAYCKEG 573



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 76/341 (22%), Positives = 149/341 (43%), Gaps = 40/341 (11%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G + +    N++V  L K G+ E+    +  + E+G+   + T+ ++ D+YC AG   +
Sbjct: 378 KGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAK 437

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A    D M   G++ D   +N++L  +C+ +          +  ++   PD  S+  ++ 
Sbjct: 438 AFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMA 497

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
            + KE N E A + + +M+ER +  P  +  Y T +  L R +++ EA+           
Sbjct: 498 AYFKEYNPEPALRLWDQMIER-KLIPS-ISTYNTLIKGLCRMERLKEAID---------- 545

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
                          KLN+          +V  G  L+P+   YN +I   C   D++N 
Sbjct: 546 ---------------KLNE----------LVEKG--LVPDETTYNIIIHAYCKEGDLENA 578

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
           FRF ++MV +   PD +T N +   L  + ++ +  K F   ++   +   +   T I  
Sbjct: 579 FRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQS 638

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 446
           +    + + A+  ++ +   G+ P   + N +L  L   GR
Sbjct: 639 MCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGR 679



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 99/425 (23%), Positives = 171/425 (40%), Gaps = 49/425 (11%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N +V    + G  +Q    V  M   G    L T+  +    C AGK DEA    D M 
Sbjct: 281 YNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAVGLCQAGKVDEAFRLKDEME 340

Query: 175 -MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
            +     DVV  N+L+ A C +   +S AL  L  ++ K V P   +  I+++   KEG 
Sbjct: 341 RLSTALPDVVTYNTLVDA-CFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGK 399

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC------- 285
           +EEA     ++ E  E     V+ Y T +    +   V +A   +  M G+         
Sbjct: 400 LEEALGKLEKIAE--EGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTL 457

Query: 286 ------FPTLKFFSNALDIL----------------------VKLNDSTHAVQLWDIMVG 317
                    +K + +A ++L                       K  +   A++LWD M  
Sbjct: 458 NTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQM-- 515

Query: 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
           I   L+P++  YN +I  LC  + +       +++V  G  PD  TYN+I     K   +
Sbjct: 516 IERKLIPSISTYNTLIKGLCRMERLKEAIDKLNELVEKGLVPDETTYNIIIHAYCKEGDL 575

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 437
               +F ++M++N ++P  + C T +  L    + + A++++   +E G      + N L
Sbjct: 576 ENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTL 635

Query: 438 LVGLRNLGRLSDVRRFAEEM----LNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERR 493
           +  +  +G +     F ++M    L      Y V +  L +A    S    ++   L   
Sbjct: 636 IQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEA--GRSEEAHNMLHKLADS 693

Query: 494 CKTSQ 498
            K SQ
Sbjct: 694 GKLSQ 698


>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
 gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
          Length = 782

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/391 (22%), Positives = 178/391 (45%), Gaps = 5/391 (1%)

Query: 93  DSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFA 151
           DS  +   +     RG       ++ ++  L K    ++    +  M ++GV+    T+ 
Sbjct: 216 DSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYN 275

Query: 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK 211
           SI   YC +G+  EA+ +   M   GVE +VV  +SL++ +C+    T     F +  K+
Sbjct: 276 SILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKR 335

Query: 212 IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD 271
            ++PD  ++  LL+G+  +G + E +     MV R    P+H + +   +    + ++VD
Sbjct: 336 GLEPDIATYRTLLQGYATKGALVEMHALLDLMV-RNGIQPDHHV-FNILICAYAKQEKVD 393

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA 331
           +A+     M+     P +  +   +D+L K      A+  ++ M+  G  L PN+I+Y +
Sbjct: 394 QAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEG--LTPNIIVYTS 451

Query: 332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
           +I  LC  D  D       +M+  G   +++ +N I +   K  RV E EK F  M++  
Sbjct: 452 LIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIG 511

Query: 392 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 451
            +P  +   T I     A + + A ++   ++  G+ P   +   L+ G   + R+ D  
Sbjct: 512 VKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDAL 571

Query: 452 RFAEEMLNRRILIYEVTMHKLKKAFYNESRS 482
              +EM++  +    +T + + +  ++  R+
Sbjct: 572 ALFKEMVSSGVSPNIITYNIILQGLFHTRRT 602



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 143/319 (44%), Gaps = 10/319 (3%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKED-GVLSLP---TFASIFDSYCGAGKYDEAVMS 169
           +++N ++  L    R ++    + +M +D G  S P   ++ ++ + +   G  D+A  +
Sbjct: 164 FSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYST 223

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWE 228
           +  M   G+  DVV  +S+++A+C+ +    +A+E LN  VK  V PD  ++  +L G+ 
Sbjct: 224 YHEMLDRGILPDVVTYSSIIAALCKAQ-AMDKAMEVLNTMVKNGVMPDCMTYNSILHGYC 282

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
             G  +EA  T  +M  R +    +V+ Y + +  L +  +  EA K    M      P 
Sbjct: 283 SSGQPKEAIGTLKKM--RSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPD 340

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
           +  +   L              L D+MV  G  + P+  ++N +I      + VD     
Sbjct: 341 IATYRTLLQGYATKGALVEMHALLDLMVRNG--IQPDHHVFNILICAYAKQEKVDQAMLV 398

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
           F +M  HG  P+ + Y  + + L K+  V +   +F +MI     P  +   + I  L  
Sbjct: 399 FSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCT 458

Query: 409 ADEPEIAIEIWNYILENGI 427
            D+ + A E+   +L+ GI
Sbjct: 459 CDKWDKAEELILEMLDRGI 477



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 127/290 (43%), Gaps = 12/290 (4%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           ++ T+A +    C AG+ D    +   +   G   D +    LL  +C  + +TS A++ 
Sbjct: 91  TVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLC-ADKRTSDAMDI 149

Query: 206 -LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLI 262
            L R+ ++   PD  S+  LL+G   E   +EA +    M  +R   +P  V++Y T L 
Sbjct: 150 VLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLN 209

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL 322
              +    D+A      M      P +  +S+ +  L K      A+++ + MV  G  +
Sbjct: 210 GFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNG--V 267

Query: 323 MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
           MP+ + YN+++   C++           +M   G  P+ +TY+ +   L KN R  E  K
Sbjct: 268 MPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARK 327

Query: 383 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE---IWNYILENGILP 429
            F  M K   +P   + AT  T+L         +E   + + ++ NGI P
Sbjct: 328 IFDSMTKRGLEP---DIATYRTLLQGYATKGALVEMHALLDLMVRNGIQP 374



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 132/304 (43%), Gaps = 12/304 (3%)

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI----VDPDGDS 219
           ++A   FD +   G    +  +N  L+ + R     + A+   NR+ +     V P   +
Sbjct: 37  EDARHVFDELLRRGRGASIYGLNRALADVARH--SPAAAVSRYNRMARAGAGKVTPTVHT 94

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKF-L 277
           +AIL+    + G ++      G +V++ F  +    + +   L  L   K+  +A+   L
Sbjct: 95  YAILIGCCCRAGRLDLGFAALGNVVKKGFRVD---AITFTPLLKGLCADKRTSDAMDIVL 151

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG-IGFNLMPNLIMYNAVIGLL 336
           R M    C P +  ++N L  L   N S  A++L  +M    G    P+++ YN V+   
Sbjct: 152 RRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGF 211

Query: 337 CNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 396
               D D  +  + +M+  G  PD +TY+ I   L K + + +  +  + M+KN   P  
Sbjct: 212 FKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDC 271

Query: 397 LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 456
           +   + +     + +P+ AI     +  +G+ P   + + L+  L   GR ++ R+  + 
Sbjct: 272 MTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDS 331

Query: 457 MLNR 460
           M  R
Sbjct: 332 MTKR 335



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 127/293 (43%), Gaps = 11/293 (3%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           R   L+P    +  ++DVL K+G  +        M ++G+  ++  + S+    C   K+
Sbjct: 403 RQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKW 462

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN--QTSRALEFLNRVKKIVDPDGDSFA 221
           D+A      M   G+  + +  NS++ + C++    ++ +  + + R+   V PD  ++ 
Sbjct: 463 DKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIG--VKPDIITYN 520

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L++G    G ++EA K    MV      P+ ++ Y T +    R  ++D+AL   + M 
Sbjct: 521 TLIDGCCLAGKMDEATKLLASMVS-VGVKPD-IVTYGTLINGYCRVSRMDDALALFKEMV 578

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
                P +  ++  L  L     +  A +L+  +   G  L   L  YN ++  LC N+ 
Sbjct: 579 SSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQL--ELSTYNIILHGLCKNNL 636

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
            D   R F  +       ++ T+N++   L+K  R+ E +  F     N   P
Sbjct: 637 TDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVP 689



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 35/182 (19%), Positives = 74/182 (40%), Gaps = 9/182 (4%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++D     G+ ++    +  M   GV   + T+ ++ + YC   + D+A+  F  M 
Sbjct: 519 YNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMV 578

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             GV  +++  N +L  +       +    +++  K     +  ++ I+L G  K    +
Sbjct: 579 SSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTD 638

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLI---TLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           EA + F  +        +  L   TF I    L++  ++DEA             P ++ 
Sbjct: 639 EALRMFQNLCL-----TDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRT 693

Query: 292 FS 293
           +S
Sbjct: 694 YS 695


>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
 gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
          Length = 331

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 143/314 (45%), Gaps = 5/314 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+  I +  C   + D+A+ + + M+  G++ D    N +LS +C++E      L F   
Sbjct: 11  TYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKM 70

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           VK+ ++P+  ++  L+ G  K   +E A + F EM  +  + P  V +Y T +    + K
Sbjct: 71  VKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGK-GYVPTEV-SYNTLIDGFCKKK 128

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
            +  A      M   NC P +  ++  +D L K      A ++ D MV  G  + PN+  
Sbjct: 129 DLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKG--VTPNVAT 186

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           Y+ +I   C    VD   +  +QMV  G  P  +TYN++   L +  ++ +  K F  M 
Sbjct: 187 YSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMA 246

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
           +    PT +   T +  L    + + A  ++  ++  G  P   + + L  GL   G++ 
Sbjct: 247 QRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVH 306

Query: 449 DVRRFAEEM-LNRR 461
           + +   E+M L +R
Sbjct: 307 EAQELMEKMKLTKR 320



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 111/250 (44%), Gaps = 7/250 (2%)

Query: 249 WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHA 308
           + P   L Y   +  L + K++D+AL  +  M      P    ++  L  L +      A
Sbjct: 4   YAPPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEA 63

Query: 309 VQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIF 368
             L++ MV    N  PN++ YN +I  LC    ++  +  F +M   G  P  ++YN + 
Sbjct: 64  RLLFEKMVKQRIN--PNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLI 121

Query: 369 ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 428
           +   K K +   +  F +M+++   P  +   T I  L  + + + A E+ + +++ G+ 
Sbjct: 122 DGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVT 181

Query: 429 PLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFD 488
           P  A+ + L+ G   + R+ +  +  E+M+ + I    VT + L  +     + + D F 
Sbjct: 182 PNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADK-LEDAFK 240

Query: 489 SL----ERRC 494
                 +RRC
Sbjct: 241 LFRGMAQRRC 250



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 108/262 (41%), Gaps = 4/262 (1%)

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           PD  ++  ++E   K   +++A  T  EM  R    P+  + Y   L  L + ++V+EA 
Sbjct: 7   PDALTYGPIVERLCKTKRIDDALATVEEMATR-GIKPDAFI-YNFVLSGLCQEEKVEEAR 64

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
                M  +   P +  ++  ++ L K      A +L+  M G G+  +P  + YN +I 
Sbjct: 65  LLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGY--VPTEVSYNTLID 122

Query: 335 LLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
             C   D+      FD+MV     P+ +TY  + + L K+ +V    +    M+K    P
Sbjct: 123 GFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTP 182

Query: 395 TPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 454
                +  I         + A ++   ++  GI P   + N LL  L    +L D  +  
Sbjct: 183 NVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLF 242

Query: 455 EEMLNRRILIYEVTMHKLKKAF 476
             M  RR     VT + L +A 
Sbjct: 243 RGMAQRRCHPTVVTYNTLLRAL 264



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 76/167 (45%), Gaps = 3/167 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +  ++D L K+G+ +     +  M + GV  ++ T++ + D +C   + DEA    + M 
Sbjct: 152 YTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMV 211

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G+   VV  N LL+++CR +        F    ++   P   ++  LL        ++
Sbjct: 212 TQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLD 271

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            A++ + EM+ +    P   + Y+T    L R  +V EA + +  MK
Sbjct: 272 GAHRLYAEMIAK--GCPPDAITYDTLAWGLTRAGKVHEAQELMEKMK 316



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 90/195 (46%), Gaps = 8/195 (4%)

Query: 97  SAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIF 154
           +A + F+  AG+G   +  ++N ++D   K        +   ++++ + V ++ T+ ++ 
Sbjct: 97  TAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLI 156

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC--RQENQTSRALEFLNRVKKI 212
           D    +GK   A    D M   GV  +V   + L+   C  R+ ++  + LE +  V + 
Sbjct: 157 DGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQM--VTQG 214

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
           + P   ++ ILL    +   +E+A K F  M +R   +P  V+ Y T L  L   KQ+D 
Sbjct: 215 IAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQR-RCHPT-VVTYNTLLRALCHHKQLDG 272

Query: 273 ALKFLRVMKGENCFP 287
           A +    M  + C P
Sbjct: 273 AHRLYAEMIAKGCPP 287


>gi|357447159|ref|XP_003593855.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355482903|gb|AES64106.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 790

 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 99/388 (25%), Positives = 176/388 (45%), Gaps = 11/388 (2%)

Query: 81  PDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYA--WNLMVDVLGKNGRFEQMWNAVRV 138
           P LV  VL+ S D    A+DFF WA R  R    A  +  M+D+L K    +     +R+
Sbjct: 164 PRLVCAVLR-SQDDERIALDFFYWADRQWRYRHDAIVYYTMLDILSKTRLCQGARRILRL 222

Query: 139 MKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           M   G+   P  F+ +  SY  AG    A+    +M   GVE D+   N+ +  + +  N
Sbjct: 223 MTRRGIERSPEAFSYVMVSYSRAGMLRNALRILTLMQKAGVEPDLSICNTAIYVLVKG-N 281

Query: 198 QTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
           +  +AL FL R+K   ++PD  S+  L++G+     +++A +   EM   F+  P   ++
Sbjct: 282 KLEKALRFLERMKVAGIEPDIVSYNCLIKGYCDVHRIDDALELIAEMP--FKGCPPDKVS 339

Query: 257 YETFLITLIRGKQVDEALKFLRVM-KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
           Y T +  L + ++V+E  + +  M +  N  P    ++  +  L K   +  A+      
Sbjct: 340 YYTVMAFLCKDRKVEEVKRLMENMVQNSNLIPDQVTYNTLIYALSKHGHADDALVFLREA 399

Query: 316 VGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 375
              GF++  + + Y+AV+   C N ++D        M   G  PD +TY  I +   +  
Sbjct: 400 EEKGFHI--DKVGYSAVVDSFCKNKNIDKAKSLVIDMYSKGCNPDVVTYTAIIDGFCRVG 457

Query: 376 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 435
           ++ E +K   +M K+  +P  +     +  L    +   A E+ N   E+   P   + +
Sbjct: 458 KIDEAKKMLQQMYKHGCKPNTVTYTVLLNGLCHNGKSLEAREMINVSEEHWWTPNAITYS 517

Query: 436 ELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
            ++ GLR  G+LS+      EM+ +  L
Sbjct: 518 AVMHGLRREGKLSEACDLTREMIEKGFL 545



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 125/304 (41%), Gaps = 45/304 (14%)

Query: 98  AVDFFRWAG-RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFD 155
           A+ F R A  +G  +    ++ +VD   KN   ++  + V  M   G    + T+ +I D
Sbjct: 392 ALVFLREAEEKGFHIDKVGYSAVVDSFCKNKNIDKAKSLVIDMYSKGCNPDVVTYTAIID 451

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV-D 214
            +C  GK DEA      M  HG + + V    LL+ +C    ++  A E +N  ++    
Sbjct: 452 GFCRVGKIDEAKKMLQQMYKHGCKPNTVTYTVLLNGLC-HNGKSLEAREMINVSEEHWWT 510

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEA 273
           P+  +++ ++ G  +EG + EA     EM+E+ F  NP  +      + +L R + V  A
Sbjct: 511 PNAITYSAVMHGLRREGKLSEACDLTREMIEKGFLPNPVDI---NLLIQSLCRNQNVVGA 567

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
            K+L     + C                      AV               N++ + +VI
Sbjct: 568 KKYLEECLHKGC----------------------AV---------------NVVNFTSVI 590

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
              C   D+D      + M      PD++TY  +F+ L K  R+ E  +   +M+     
Sbjct: 591 YGFCQIGDLDAALSMLEDMYLSNKHPDAITYTTLFDALGKKSRLDEASELIVKMLGKGID 650

Query: 394 PTPL 397
           PTP+
Sbjct: 651 PTPV 654


>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
 gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
          Length = 918

 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 164/356 (46%), Gaps = 7/356 (1%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F R +  G   +   +N ++++L +N R +  +  + +M  +G   ++ T+  +   YC 
Sbjct: 378 FHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCI 437

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGD 218
            G   +A++  + M   G   ++V  N+++   C   N TS AL  L+ ++     PD  
Sbjct: 438 LGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTS-ALRILDLMRDGGCKPDEW 496

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           S+  L+ G+ K   +E A   F EMV+     P  V  Y   +    + +++D A   L 
Sbjct: 497 SYTELICGFCKISKMESAFGLFNEMVDD-GLCPNEV-TYTALIDGYCKDEKLDTATSLLE 554

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            MK   C P ++ ++  +  L K N+ + A +L  +M+  G  + PN++ Y A+I  LC 
Sbjct: 555 HMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEG--IFPNVVTYTAMIDGLCK 612

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
           N         F++M+  G  P+ LTY+ +   L +  +V E E  F E+ ++   P  + 
Sbjct: 613 NGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEIT 672

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 454
               I   + + + E A      +++ G  P   +   L+ GL+N   L+D R  A
Sbjct: 673 YVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAA 728



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/373 (22%), Positives = 160/373 (42%), Gaps = 8/373 (2%)

Query: 127 GRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAV 185
           G +E  W     MK  G   ++ T+ ++    C +G    A+  F  MS  GV  + V  
Sbjct: 334 GCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTY 393

Query: 186 NSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244
           N+L++ I  +  +   A   LN + +    P+  ++  +++G+   G+ ++A      M+
Sbjct: 394 NALIN-ILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNML 452

Query: 245 ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 304
           +R   +  +++ Y T +           AL+ L +M+   C P    ++  +    K++ 
Sbjct: 453 QR--GHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISK 510

Query: 305 STHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTY 364
              A  L++ MV  G  L PN + Y A+I   C ++ +D      + M   G  P+  TY
Sbjct: 511 MESAFGLFNEMVDDG--LCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTY 568

Query: 365 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 424
           N++   L K       E+    MI+    P  +     I  L       +A+E++N ++E
Sbjct: 569 NVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIE 628

Query: 425 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMR 484
            G LP   + + L+  L   G++ +      E+    ++  E+T  K+ +A Y  S  + 
Sbjct: 629 QGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEA-YIMSGKVE 687

Query: 485 DIFDSLERRCKTS 497
             F+ L R  K  
Sbjct: 688 HAFNFLGRMIKAG 700



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 79/408 (19%), Positives = 156/408 (38%), Gaps = 48/408 (11%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE--DGVLSLPTFA--SIFDS 156
           + R    G + +   +N +++ L K+G    + +A  +MK+  +  +S  TF   S+   
Sbjct: 203 YHRMLSEGVQPNLLIYNAVINALCKDG---NVADAETIMKKVFESEMSPDTFTYTSMILG 259

Query: 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE------------ 204
           +C     D A+  F+ M+  G E + V  ++L++ +C    + + A +            
Sbjct: 260 HCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLC-DSGRVNEAFDLIREMILHGILP 318

Query: 205 ------------------------FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTF 240
                                   F++   K  +P+  ++  L+ G    G ++ A   F
Sbjct: 319 TAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLF 378

Query: 241 GEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV 300
             M  R    P  V  Y   +  L+  +++  A   L +M    C P +  ++  +    
Sbjct: 379 HRM-SRDGVFPNTV-TYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYC 436

Query: 301 KLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPD 360
            L D   A+ + + M+  G +   NL+ YN +I   C++ +  +  R  D M   G  PD
Sbjct: 437 ILGDPKKAMLVMNNMLQRGHS--ANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPD 494

Query: 361 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 420
             +Y  +     K  ++      F+EM+ +   P  +     I      ++ + A  +  
Sbjct: 495 EWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLE 554

Query: 421 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 468
           ++  +G  P   + N L+ GL      S      + M+   I    VT
Sbjct: 555 HMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVT 602



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 69/317 (21%), Positives = 126/317 (39%), Gaps = 5/317 (1%)

Query: 167 VMSF-DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
            MSF D++S  G+   + A ++LL  + R     +    +   + + V P+   +  ++ 
Sbjct: 164 TMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVIN 223

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
              K+GNV +A     ++ E  E +P+    Y + ++   R   +D AL+    M  E C
Sbjct: 224 ALCKDGNVADAETIMKKVFES-EMSPD-TFTYTSMILGHCRKHDLDSALQVFNQMAKEGC 281

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P    +S  ++ L        A  L   M+  G  ++P        I  LC+    ++ 
Sbjct: 282 EPNTVTYSTLINGLCDSGRVNEAFDLIREMILHG--ILPTAHTCTGPIIALCDMGCYEDA 339

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
           +R F  M   G  P+  TY  +   L  +  +      FH M ++   P  +     I +
Sbjct: 340 WRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINI 399

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 465
           L++    + A  + N +  NG  P   + NE++ G   LG           ML R     
Sbjct: 400 LVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSAN 459

Query: 466 EVTMHKLKKAFYNESRS 482
            VT + + K + +   +
Sbjct: 460 LVTYNTIIKGYCDSGNT 476


>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
          Length = 1007

 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 164/356 (46%), Gaps = 7/356 (1%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F R +  G   +   +N ++++L +N R +  +  + +M  +G   ++ T+  +   YC 
Sbjct: 378 FHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCI 437

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGD 218
            G   +A++  + M   G   ++V  N+++   C   N TS AL  L+ ++     PD  
Sbjct: 438 LGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTS-ALRILDLMRDGGCKPDEW 496

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           S+  L+ G+ K   +E A   F EMV+     P  V  Y   +    + +++D A   L 
Sbjct: 497 SYTELICGFCKISKMESAFGLFNEMVDD-GLCPNEV-TYTALIDGYCKDEKLDTATSLLE 554

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            MK   C P ++ ++  +  L K N+ + A +L  +M+  G  + PN++ Y A+I  LC 
Sbjct: 555 HMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEG--IFPNVVTYTAMIDGLCK 612

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
           N         F++M+  G  P+ LTY+ +   L +  +V E E  F E+ ++   P  + 
Sbjct: 613 NGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEIT 672

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 454
               I   + + + E A      +++ G  P   +   L+ GL+N   L+D R  A
Sbjct: 673 YVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAA 728



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/373 (22%), Positives = 160/373 (42%), Gaps = 8/373 (2%)

Query: 127 GRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAV 185
           G +E  W     MK  G   ++ T+ ++    C +G    A+  F  MS  GV  + V  
Sbjct: 334 GCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTY 393

Query: 186 NSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244
           N+L++ I  +  +   A   LN + +    P+  ++  +++G+   G+ ++A      M+
Sbjct: 394 NALIN-ILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNML 452

Query: 245 ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 304
           +R   +  +++ Y T +           AL+ L +M+   C P    ++  +    K++ 
Sbjct: 453 QR--GHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISK 510

Query: 305 STHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTY 364
              A  L++ MV  G  L PN + Y A+I   C ++ +D      + M   G  P+  TY
Sbjct: 511 MESAFGLFNEMVDDG--LCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTY 568

Query: 365 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 424
           N++   L K       E+    MI+    P  +     I  L       +A+E++N ++E
Sbjct: 569 NVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIE 628

Query: 425 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMR 484
            G LP   + + L+  L   G++ +      E+    ++  E+T  K+ +A Y  S  + 
Sbjct: 629 QGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEA-YIMSGKVE 687

Query: 485 DIFDSLERRCKTS 497
             F+ L R  K  
Sbjct: 688 HAFNFLGRMIKAG 700



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 79/408 (19%), Positives = 156/408 (38%), Gaps = 48/408 (11%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE--DGVLSLPTFA--SIFDS 156
           + R    G + +   +N +++ L K+G    + +A  +MK+  +  +S  TF   S+   
Sbjct: 203 YHRMLSEGVQPNLLIYNAVINALCKDG---NVADAETIMKKVFESEMSPDTFTYTSMILG 259

Query: 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE------------ 204
           +C     D A+  F+ M+  G E + V  ++L++ +C    + + A +            
Sbjct: 260 HCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLC-DSGRVNEAFDLIREMILHGILP 318

Query: 205 ------------------------FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTF 240
                                   F++   K  +P+  ++  L+ G    G ++ A   F
Sbjct: 319 TAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLF 378

Query: 241 GEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV 300
             M  R    P  V  Y   +  L+  +++  A   L +M    C P +  ++  +    
Sbjct: 379 HRM-SRDGVFPNTV-TYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYC 436

Query: 301 KLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPD 360
            L D   A+ + + M+  G +   NL+ YN +I   C++ +  +  R  D M   G  PD
Sbjct: 437 ILGDPKKAMLVMNNMLQRGHS--ANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPD 494

Query: 361 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 420
             +Y  +     K  ++      F+EM+ +   P  +     I      ++ + A  +  
Sbjct: 495 EWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLE 554

Query: 421 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 468
           ++  +G  P   + N L+ GL      S      + M+   I    VT
Sbjct: 555 HMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVT 602



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 69/317 (21%), Positives = 126/317 (39%), Gaps = 5/317 (1%)

Query: 167 VMSF-DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
            MSF D++S  G+   + A ++LL  + R     +    +   + + V P+   +  ++ 
Sbjct: 164 TMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVIN 223

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
              K+GNV +A     ++ E  E +P+    Y + ++   R   +D AL+    M  E C
Sbjct: 224 ALCKDGNVADAETIMKKVFES-EMSPD-TFTYTSMILGHCRKHDLDSALQVFNQMAKEGC 281

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P    +S  ++ L        A  L   M+  G  ++P        I  LC+    ++ 
Sbjct: 282 EPNTVTYSTLINGLCDSGRVNEAFDLIREMILHG--ILPTAHTCTGPIIALCDMGCYEDA 339

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
           +R F  M   G  P+  TY  +   L  +  +      FH M ++   P  +     I +
Sbjct: 340 WRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINI 399

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 465
           L++    + A  + N +  NG  P   + NE++ G   LG           ML R     
Sbjct: 400 LVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSAN 459

Query: 466 EVTMHKLKKAFYNESRS 482
            VT + + K + +   +
Sbjct: 460 LVTYNTIIKGYCDSGNT 476


>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 918

 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 164/356 (46%), Gaps = 7/356 (1%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F R +  G   +   +N ++++L +N R +  +  + +M  +G   ++ T+  +   YC 
Sbjct: 378 FHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCI 437

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGD 218
            G   +A++  + M   G   ++V  N+++   C   N TS AL  L+ ++     PD  
Sbjct: 438 LGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTS-ALRILDLMRDGGCKPDEW 496

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           S+  L+ G+ K   +E A   F EMV+     P  V  Y   +    + +++D A   L 
Sbjct: 497 SYTELICGFCKISKMESAFGLFNEMVDD-GLCPNEV-TYTALIDGYCKDEKLDTATSLLE 554

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            MK   C P ++ ++  +  L K N+ + A +L  +M+  G  + PN++ Y A+I  LC 
Sbjct: 555 HMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEG--IFPNVVTYTAMIDGLCK 612

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
           N         F++M+  G  P+ LTY+ +   L +  +V E E  F E+ ++   P  + 
Sbjct: 613 NGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEIT 672

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 454
               I   + + + E A      +++ G  P   +   L+ GL+N   L+D R  A
Sbjct: 673 YVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAA 728



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/373 (22%), Positives = 160/373 (42%), Gaps = 8/373 (2%)

Query: 127 GRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAV 185
           G +E  W     MK  G   ++ T+ ++    C +G    A+  F  MS  GV  + V  
Sbjct: 334 GCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTY 393

Query: 186 NSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244
           N+L++ I  +  +   A   LN + +    P+  ++  +++G+   G+ ++A      M+
Sbjct: 394 NALIN-ILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNML 452

Query: 245 ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 304
           +R   +  +++ Y T +           AL+ L +M+   C P    ++  +    K++ 
Sbjct: 453 QR--GHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISK 510

Query: 305 STHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTY 364
              A  L++ MV  G  L PN + Y A+I   C ++ +D      + M   G  P+  TY
Sbjct: 511 MESAFGLFNEMVDDG--LCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTY 568

Query: 365 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 424
           N++   L K       E+    MI+    P  +     I  L       +A+E++N ++E
Sbjct: 569 NVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIE 628

Query: 425 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMR 484
            G LP   + + L+  L   G++ +      E+    ++  E+T  K+ +A Y  S  + 
Sbjct: 629 QGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEA-YIMSGKVE 687

Query: 485 DIFDSLERRCKTS 497
             F+ L R  K  
Sbjct: 688 HAFNFLGRMIKAG 700



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 79/408 (19%), Positives = 156/408 (38%), Gaps = 48/408 (11%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE--DGVLSLPTFA--SIFDS 156
           + R    G + +   +N +++ L K+G    + +A  +MK+  +  +S  TF   S+   
Sbjct: 203 YHRMLSEGVQPNLLIYNAVINALCKDG---NVADAETIMKKVFESEMSPDTFTYTSMILG 259

Query: 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE------------ 204
           +C     D A+  F+ M+  G E + V  ++L++ +C    + + A +            
Sbjct: 260 HCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLC-DSGRVNEAFDLIREMILHGILP 318

Query: 205 ------------------------FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTF 240
                                   F++   K  +P+  ++  L+ G    G ++ A   F
Sbjct: 319 TAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLF 378

Query: 241 GEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV 300
             M  R    P  V  Y   +  L+  +++  A   L +M    C P +  ++  +    
Sbjct: 379 HRM-SRDGVFPNTV-TYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYC 436

Query: 301 KLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPD 360
            L D   A+ + + M+  G +   NL+ YN +I   C++ +  +  R  D M   G  PD
Sbjct: 437 ILGDPKKAMLVMNNMLQRGHS--ANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPD 494

Query: 361 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 420
             +Y  +     K  ++      F+EM+ +   P  +     I      ++ + A  +  
Sbjct: 495 EWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLE 554

Query: 421 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 468
           ++  +G  P   + N L+ GL      S      + M+   I    VT
Sbjct: 555 HMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVT 602



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 69/317 (21%), Positives = 126/317 (39%), Gaps = 5/317 (1%)

Query: 167 VMSF-DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
            MSF D++S  G+   + A ++LL  + R     +    +   + + V P+   +  ++ 
Sbjct: 164 TMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVIN 223

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
              K+GNV +A     ++ E  E +P+    Y + ++   R   +D AL+    M  E C
Sbjct: 224 ALCKDGNVADAETIMKKVFES-EMSPD-TFTYTSMILGHCRKHDLDSALQVFNQMAKEGC 281

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P    +S  ++ L        A  L   M+  G  ++P        I  LC+    ++ 
Sbjct: 282 EPNTVTYSTLINGLCDSGRVNEAFDLIREMILHG--ILPTAHTCTGPIIALCDMGCYEDA 339

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
           +R F  M   G  P+  TY  +   L  +  +      FH M ++   P  +     I +
Sbjct: 340 WRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINI 399

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 465
           L++    + A  + N +  NG  P   + NE++ G   LG           ML R     
Sbjct: 400 LVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSAN 459

Query: 466 EVTMHKLKKAFYNESRS 482
            VT + + K + +   +
Sbjct: 460 LVTYNTIIKGYCDSGNT 476


>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
 gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 93/396 (23%), Positives = 172/396 (43%), Gaps = 25/396 (6%)

Query: 107 RGQRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           RG    P A  +N +V    + G  ++    V +M+E G+  +L TF S+ +  C AG+ 
Sbjct: 184 RGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRM 243

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
           ++A   FD M   G+  D V+ N+L+   C+          F    +K + PD  +F  L
Sbjct: 244 EDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSL 303

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           +    K GN+E A     EM ER     E  + +   +    +   +D+AL  +R M+  
Sbjct: 304 IHVMCKAGNLERAVGLVREMRERGLQMNE--ITFTALIDGFCKKGFLDDALLAVREMRQC 361

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
              P++  ++  ++    +     A +L   M   G    P+++ Y+ ++   C N D  
Sbjct: 362 RIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVK--PDVVTYSTILSAYCKNGDTH 419

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
           + F+   QM+ +G  PD++TY+ +   L + KR+ +    F  MI    QP  +   + I
Sbjct: 420 SAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLI 479

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
                    E A+ + + +++ G+LP   + + L+ GL    R  + +R           
Sbjct: 480 DGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRL---------- 529

Query: 464 IYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQM 499
                   L K ++ E       +D+L R C+ +++
Sbjct: 530 --------LFKLYHEEPVPANIKYDALMRCCRNAEL 557



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 1/135 (0%)

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           P+++ YNAV+ L  ++  + +  RFFD M+  G  P+  TYN++   L       E    
Sbjct: 121 PSVLAYNAVL-LALSDASLPSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSV 179

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
             +M      P  +   T +     A E + A  + + + E G+ P   + N ++ G+  
Sbjct: 180 LRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICK 239

Query: 444 LGRLSDVRRFAEEML 458
            GR+ D R+  +EM+
Sbjct: 240 AGRMEDARKVFDEMV 254



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/177 (22%), Positives = 76/177 (42%), Gaps = 4/177 (2%)

Query: 298 ILVKLNDST--HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
           +L+ L+D++   A + +D M+  G  + PN+  YN ++  LC              M   
Sbjct: 129 VLLALSDASLPSARRFFDSMLSDG--VAPNVYTYNILVRALCGRGHRKEALSVLRDMRGA 186

Query: 356 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 415
           G  P+++TYN +     +   V   E+    M +   +P  +   + +  +  A   E A
Sbjct: 187 GCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDA 246

Query: 416 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
            ++++ +++ G+ P   S N L+ G   +G   +      EM  + I+   VT   L
Sbjct: 247 RKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSL 303


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 89/394 (22%), Positives = 172/394 (43%), Gaps = 41/394 (10%)

Query: 97  SAVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASI 153
           SA + +R   R  R+SP  Y +N+++      G  ++       M+ +G L ++ T+ ++
Sbjct: 197 SAEEVYREMIR-SRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTL 255

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KI 212
            D+YC  G+ DEA      MS  G++ ++++ N +++ +CR E     A E L  +  K 
Sbjct: 256 IDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCR-EGSMKEAWEILEEMGYKG 314

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
             PD  ++  LL G+ KEGN  +A     EMV R   +P  V+ Y   + ++ + + ++ 
Sbjct: 315 FTPDEVTYNTLLNGYCKEGNFHQALVIHAEMV-RNGVSPS-VVTYTALINSMCKARNLNR 372

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFN----------- 321
           A++F   M+     P  + ++  +D   +      A ++ + M   GF+           
Sbjct: 373 AMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIH 432

Query: 322 ----------------------LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFP 359
                                 L P+++ Y+ +I   C   ++D  F+   +MV  G  P
Sbjct: 433 GHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSP 492

Query: 360 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 419
           D++TY+ + + L + +R+ E      EM+     P      T I       +   A+ + 
Sbjct: 493 DAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLH 552

Query: 420 NYILENGILPLEASANELLVGLRNLGRLSDVRRF 453
           + ++  G LP   + + L+ GL    R  + +R 
Sbjct: 553 DEMIHKGFLPDAVTYSVLINGLNKQARTREAKRL 586



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 93/447 (20%), Positives = 196/447 (43%), Gaps = 57/447 (12%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           + +G + +  ++N++++ L + G  ++ W  +  M   G      T+ ++ + YC  G +
Sbjct: 276 SSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNF 335

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAI 222
            +A++    M  +GV   VV   +L++++C+  N  +RA+EF ++++ + + P+  ++  
Sbjct: 336 HQALVIHAEMVRNGVSPSVVTYTALINSMCKARN-LNRAMEFFDQMRIRGLRPNERTYTT 394

Query: 223 LLEGWEKEGNVEEANKTFGEM---------------------VERFE------------- 248
           L++G+ ++G + EA +   EM                     +ER E             
Sbjct: 395 LIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKG 454

Query: 249 WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHA 308
             P+ V++Y T +    R  ++D A +  + M  +   P    +S+ +  L ++   T A
Sbjct: 455 LAPD-VVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEA 513

Query: 309 VQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIF 368
             L   M+ +G  L P+   Y  +I   C   D++      D+M+  G  PD++TY+++ 
Sbjct: 514 CDLSQEMLDMG--LPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLI 571

Query: 369 ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI-------------- 414
             L K  R  E ++   ++I  E  P+ +   T I    + +   +              
Sbjct: 572 NGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMH 631

Query: 415 -AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 473
            A  ++  ++E    P EA  N ++ G    G L       +EM++   + + VT+  L 
Sbjct: 632 EADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLI 691

Query: 474 KAFYNE--SRSMRDIFDSLERRCKTSQ 498
           KA + E  +  M ++     R C+ ++
Sbjct: 692 KALFKEGMNEEMSEVIGDTLRSCRLNE 718



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 128/313 (40%), Gaps = 45/313 (14%)

Query: 151 ASIFD----SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206
           +++FD    SY      D+AV + ++    G    V++ NS+L AI R       + E +
Sbjct: 142 SAVFDLMVKSYSHLNMIDQAVNTINLAKSSGFMPGVLSYNSVLDAIVRSRGSVKLSAEEV 201

Query: 207 NR--VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
            R  ++  V P+  ++ IL+ G+   G +++    FGEM ER    P +V+ Y T +   
Sbjct: 202 YREMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEM-ERNGCLP-NVVTYNTLIDAY 259

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
            +  ++DEA   L+ M  +                                      + P
Sbjct: 260 CKMGRIDEAFGLLKSMSSK-------------------------------------GMQP 282

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           NLI YN +I  LC    +   +   ++M + G  PD +TYN +     K    H+     
Sbjct: 283 NLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIH 342

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
            EM++N   P+ +     I  +  A     A+E ++ +   G+ P E +   L+ G    
Sbjct: 343 AEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQ 402

Query: 445 GRLSDVRRFAEEM 457
           G L++  R   EM
Sbjct: 403 GLLNEAYRILNEM 415



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 96/230 (41%), Gaps = 10/230 (4%)

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH--AVQLWDIMVGIGFNLMPNLI 327
           +D+A+  + + K     P +  +++ LD +V+   S    A +++  M  I   + PN+ 
Sbjct: 158 IDQAVNTINLAKSSGFMPGVLSYNSVLDAIVRSRGSVKLSAEEVYREM--IRSRVSPNVY 215

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            YN +I   C+  ++      F +M  +G  P+ +TYN + +   K  R+ E       M
Sbjct: 216 TYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSM 275

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
                QP  ++    I  L      + A EI   +   G  P E + N LL G    G  
Sbjct: 276 SSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNF 335

Query: 448 SDVRRFAEEMLNR----RILIYEVTMHKLKKAFYNESRSMRDIFDSLERR 493
                   EM+       ++ Y   ++ + KA  N +R+M + FD +  R
Sbjct: 336 HQALVIHAEMVRNGVSPSVVTYTALINSMCKA-RNLNRAM-EFFDQMRIR 383


>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
 gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
          Length = 448

 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 89/390 (22%), Positives = 174/390 (44%), Gaps = 7/390 (1%)

Query: 76  GIIPTPDLVHEVLQLSYDSP--SSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMW 133
           GI+P   + + +++   D+    SA+  +R   R    S   + ++VD L K+ R     
Sbjct: 63  GIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRHCAPSVITYTILVDALCKSARISDAS 122

Query: 134 NAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI 192
             +  M E G   ++ T+ ++ + +C  G  DEAV+ F+ M  +    DV   N L+   
Sbjct: 123 LILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGY 182

Query: 193 CRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
           C+QE     A      VK   +P+  ++  L++   K G   +A     +M+ R +  P 
Sbjct: 183 CKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAF-NLAQMMLRRDCKPS 241

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
           H   +   +    +  Q+D A +  ++M    C P +  ++  +    + N    A QL 
Sbjct: 242 H-FTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLL 300

Query: 313 DIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 372
           + M   G    P+++ YN+++  LC    VD  +  ++ +   G F D +T + + + L 
Sbjct: 301 ERMTEAG--CPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLC 358

Query: 373 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 432
           K++R+ + EK   EM +N   P  +     I     AD+ + ++  ++ +L+ G +P   
Sbjct: 359 KSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVI 418

Query: 433 SANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
           + + ++  L    R+ D     + ML R +
Sbjct: 419 TYSIVIDKLCKSARVRDGCMLLKTMLERGV 448



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 129/308 (41%), Gaps = 40/308 (12%)

Query: 185 VNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244
            N LLSA  R++        F N +  +  PD  +++ L+ G+ K  + ++A +   EM 
Sbjct: 1   CNCLLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEME 60

Query: 245 ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 304
           +R      H   Y T +  L    +VD AL   R M+  +C P++  ++  +D L K   
Sbjct: 61  KR--GIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQ-RHCAPSVITYTILVDALCKSAR 117

Query: 305 STHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTY 364
            + A  + + M+  G    PN++ YN +I   C   ++D     F+QM+ +   PD  TY
Sbjct: 118 ISDASLILEDMIEAG--CAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTY 175

Query: 365 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL--------------------------- 397
           N++ +   K +R  +  K   EM+K   +P  +                           
Sbjct: 176 NILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLR 235

Query: 398 -NCATA-------ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 449
            +C  +       I M     + ++A E++  + + G LP   + N ++ G     R+ D
Sbjct: 236 RDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDD 295

Query: 450 VRRFAEEM 457
            R+  E M
Sbjct: 296 ARQLLERM 303



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 69/366 (18%), Positives = 135/366 (36%), Gaps = 44/366 (12%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T++++ + +C A  + +A    D M   G+       N+++  +C    +   AL     
Sbjct: 35  TYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLC-DNGRVDSALVHYRD 93

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           +++   P   ++ IL++   K   + +A+    +M+E       +V+ Y T +    +  
Sbjct: 94  MQRHCAPSVITYTILVDALCKSARISDASLILEDMIE--AGCAPNVVTYNTLINGFCKLG 151

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
            +DEA+     M   +C P +  ++  +D   K        +L   MV  G    PN I 
Sbjct: 152 NMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCE--PNFIT 209

Query: 329 YNAV-----------------------------------IGLLCNNDDVDNVFRFFDQMV 353
           YN +                                   I + C    +D  +  F  M 
Sbjct: 210 YNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMT 269

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G  PD  TYN++     +  R+ +  +    M +    P  +   + ++ L  A + +
Sbjct: 270 DRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVD 329

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR----RILIYEVTM 469
            A E++  +   G      + + L+ GL    RL D  +   EM        ++ Y + +
Sbjct: 330 EAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILI 389

Query: 470 HKLKKA 475
           H   KA
Sbjct: 390 HGFCKA 395


>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 901

 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 83/358 (23%), Positives = 159/358 (44%), Gaps = 4/358 (1%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK 162
           R   RG   S  A+N ++  LGK GR  +       MK+D   +L T+  + D  C AG+
Sbjct: 363 RQKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEMKKDAAPNLSTYNVLIDMLCKAGE 422

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
            + A    D M   G+  +V+ VN ++  +C+ +        F     KI  PD  +F  
Sbjct: 423 VEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKLDEACSIFEGMNHKICSPDEVTFCS 482

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L++G  K+G V++A + + +M++  +  P  V+ Y + + +  +  + ++  K  + M  
Sbjct: 483 LIDGLGKQGRVDDAYRLYEQMLDS-DKIPNAVV-YTSLIKSFFKCGRKEDGHKIFKEMIH 540

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
             C P L+  +  +D + K  ++     L++ +   GF  +P+++ Y+ +I  L      
Sbjct: 541 RGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRGF--IPDVMSYSILIHGLVKAGFA 598

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
              +  F  M   G   D+  YN   +   K+ +V++  +   EM     QPT +   + 
Sbjct: 599 RETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSV 658

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           I  L   D  + A  ++     NG+       + L+ G   +GR+ +     EE++ +
Sbjct: 659 IDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQK 716



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 80/373 (21%), Positives = 155/373 (41%), Gaps = 38/373 (10%)

Query: 119 MVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           ++D LGK GR +  +    +++  D + +   + S+  S+   G+ ++    F  M   G
Sbjct: 483 LIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRG 542

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEA 236
              D+  +N+ +  + +   +T +       +K +   PD  S++IL+ G  K G   E 
Sbjct: 543 CSPDLRLLNAYMDCVFKA-GETGKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGFARET 601

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
            + F  M E+      H  AY TF+    +  +V++A + L  MK +   PT+  + + +
Sbjct: 602 YELFYAMKEQGCVLDTH--AYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVI 659

Query: 297 DILVKLNDSTHAVQLWD----------------IMVGIGF-----------------NLM 323
           D L K++    A  L++                ++ G G                   L 
Sbjct: 660 DGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLT 719

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           PN+  +N ++  L   ++++     F  M      P+ +TY+++   L + ++ ++   F
Sbjct: 720 PNVYTWNCLLDALVKAEEINEALVCFQNMKNLKGTPNHITYSILINGLCRVRKFNKAFVF 779

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
           + EM K   +P  +   T I  L  A     A  ++     NG +P  AS N ++ GL  
Sbjct: 780 WQEMQKQGLKPNTITYTTMIAGLAKAGNIAEASSLFERFKANGGVPDSASYNAIIEGLSY 839

Query: 444 LGRLSDVRRFAEE 456
             R  +  +  EE
Sbjct: 840 SRRAMEAYKIFEE 852



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 81/381 (21%), Positives = 150/381 (39%), Gaps = 41/381 (10%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-----------------SLPTFASIFD--- 155
           +N+ +D  GK G+ +  W     +K  G+L                  L     IF+   
Sbjct: 271 YNVCIDCFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQME 330

Query: 156 ----------------SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQT 199
                            Y  AGK+DEA    +     G    V+A N +L+ + ++  + 
Sbjct: 331 QNRNVPCAYAYNTMIMGYGSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCLGKK-GRL 389

Query: 200 SRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYET 259
             AL     +KK   P+  ++ +L++   K G VE A K    M E   +   +V+    
Sbjct: 390 GEALRTFEEMKKDAAPNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLF--PNVMTVNI 447

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG 319
            +  L + K++DEA      M  + C P    F + +D L K      A +L++ M  + 
Sbjct: 448 MIDRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQM--LD 505

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
            + +PN ++Y ++I         ++  + F +M+  G  PD    N   +C+ K     +
Sbjct: 506 SDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGK 565

Query: 380 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 439
               F E+    + P  ++ +  I  L+ A       E++  + E G +    + N  + 
Sbjct: 566 GRALFEEIKSRGFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFID 625

Query: 440 GLRNLGRLSDVRRFAEEMLNR 460
           G    G+++   +  EEM  +
Sbjct: 626 GFCKSGKVNKAYQLLEEMKTK 646



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 143/336 (42%), Gaps = 45/336 (13%)

Query: 83  LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED 142
           L+H +++  +   +  + F+    +G  L  +A+N  +D   K+G+  + +  +  MK  
Sbjct: 588 LIHGLVKAGFARETYEL-FYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTK 646

Query: 143 GVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSR 201
           G   ++ T+ S+ D      + DEA M F+    +G+E +VV  +S              
Sbjct: 647 GRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSS-------------- 692

Query: 202 ALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFL 261
                                L++G+ K G ++EA     E++++    P +V  +   L
Sbjct: 693 ---------------------LIDGFGKVGRIDEAYLIMEELMQK-GLTP-NVYTWNCLL 729

Query: 262 ITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFN 321
             L++ ++++EAL   + MK     P    +S  ++ L ++     A   W  M   G  
Sbjct: 730 DALVKAEEINEALVCFQNMKNLKGTPNHITYSILINGLCRVRKFNKAFVFWQEMQKQG-- 787

Query: 322 LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 381
           L PN I Y  +I  L    ++      F++   +G  PDS +YN I E L  ++R  E  
Sbjct: 788 LKPNTITYTTMIAGLAKAGNIAEASSLFERFKANGGVPDSASYNAIIEGLSYSRRAMEAY 847

Query: 382 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 417
           K F E      +   ++  T I  LLDA + +  +E
Sbjct: 848 KIFEE---TRMKGCNIHTKTCIA-LLDALQKDECLE 879



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 110/467 (23%), Positives = 188/467 (40%), Gaps = 49/467 (10%)

Query: 56  ICEILAHAS-SDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRG--QRLS 112
           +C+IL   +   D+E+AL+     P  DLV  VL+ + D  + A+ +FRW  R   Q L 
Sbjct: 69  VCKILESGNWGPDVENALSLFVESPKTDLVIGVLRRAKD-VNQAISYFRWTERKTDQALC 127

Query: 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-----------VLSL-------------- 147
           P A++ ++ V+ KN +F+     +  M   G           +LS               
Sbjct: 128 PEAYDSLLLVMAKNVKFDYFEQILGEMSIAGFGPSTKTCIELILSCIKSNKLREGFDLIQ 187

Query: 148 --------PTFASIFDSYCGA----GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
                   P F S + +  GA     + D  +  F  M   G E  V    +++    R 
Sbjct: 188 CMRKFKFRPAF-SAYTTLIGALSSVQESDIMLTLFHQMQELGYEVSVHLFTTVIRVFAR- 245

Query: 196 ENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV 254
           E +   AL  L+ +K   +  D   + + ++ + K G V+ A K F E ++     P+ V
Sbjct: 246 EGRLDAALSLLDEMKSNCLHADIVLYNVCIDCFGKAGKVDMAWKFFHE-IKSHGLLPDDV 304

Query: 255 LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314
             Y + +  L +G ++DEA++    M+     P    ++  +           A  L + 
Sbjct: 305 -TYTSMIGVLCKGNRLDEAVEIFEQMEQNRNVPCAYAYNTMIMGYGSAGKFDEAYSLLER 363

Query: 315 MVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN 374
               G   +P++I YN ++  L     +    R F++M    A P+  TYN++ + L K 
Sbjct: 364 QKARG--CIPSVIAYNCILTCLGKKGRLGEALRTFEEMKKDAA-PNLSTYNVLIDMLCKA 420

Query: 375 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 434
             V    K    M +    P  +     I  L  A + + A  I+  +      P E + 
Sbjct: 421 GEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKLDEACSIFEGMNHKICSPDEVTF 480

Query: 435 NELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
             L+ GL   GR+ D  R  E+ML+   +   V    L K+F+   R
Sbjct: 481 CSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFKCGR 527


>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
 gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
          Length = 600

 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 162/345 (46%), Gaps = 8/345 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           Y   +++  L K+G+ E+    V  +   G+  + TF       C A +  +A   FD M
Sbjct: 17  YTVGILLRSLLKSGKIEKAHRFVEQLLVKGLCDISTFNIYISGLCRASRIGDAQTVFDGM 76

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
             HG   + +  N+LLS +C     +     +   +K    PD  ++  LL G+ K G +
Sbjct: 77  RKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGKL 136

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           +EA K F   V+R  + P+ V+ Y   +    +  ++DEA + L+ M  E+  P +  ++
Sbjct: 137 DEALKIFDGAVKR-GFVPD-VVTYNALINGFCKADKLDEAQRILQRMVSESLVPDVVTYN 194

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN-DDVDNVFRFFDQM 352
           + ++ L K      A  L   +V  GF+  PN+I Y+ +I  LC     +++  +  ++M
Sbjct: 195 SLVNGLCKNGRVDEARML---IVDKGFS--PNVITYSTLISGLCRELRRLESARQLLEKM 249

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
           V +G  PD ++YN +   L + + V E  K F  +++  ++P        I  LL  D  
Sbjct: 250 VLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRV 309

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
             A E+++ ++++G+ P   +    + GL   GR+ D     ++M
Sbjct: 310 NEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDM 354



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 160/347 (46%), Gaps = 12/347 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N +++   K  + ++    + R++ E  V  + T+ S+ +  C  G+ DEA M   ++ 
Sbjct: 158 YNALINGFCKADKLDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARM---LIV 214

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNV 233
             G   +V+  ++L+S +CR+  +   A + L + V     PD  S+  L+ G  +E  V
Sbjct: 215 DKGFSPNVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGV 274

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            EA K FG ++ R  + PE V  Y   +  L++  +V+EA +    +      P    ++
Sbjct: 275 SEALKLFGSVL-RQGYEPE-VPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYT 332

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +D L K      A+ +   M   G   +P+++ +NAVI  LC    VD        M 
Sbjct: 333 VFIDGLCKAGRVEDALLMLKDMDEKG--CVPDVVSHNAVINGLCKEKRVDEAEVLLSGME 390

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA-DEP 412
             G  P+++++N +     +  +  +    F EM+K   +PT +     +  L  A  E 
Sbjct: 391 AKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEG 450

Query: 413 EI--AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
            I  AI +++ ++E G +P   + + L+ GL   G+L D RR    M
Sbjct: 451 RIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAM 497



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 90/367 (24%), Positives = 161/367 (43%), Gaps = 15/367 (4%)

Query: 116 WNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++  L   GR         R++K      + T+ ++   +C  GK DEA+  FD   
Sbjct: 88  YNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAV 147

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNV 233
             G   DVV  N+L++  C+ + +   A   L R V + + PD  ++  L+ G  K G V
Sbjct: 148 KRGFVPDVVTYNALINGFCKAD-KLDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRV 206

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRG-KQVDEALKFLRVMKGENCFPTLKFF 292
           +EA      ++    ++P +V+ Y T +  L R  ++++ A + L  M    C P +  +
Sbjct: 207 DEARM----LIVDKGFSP-NVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSY 261

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  +  L +    + A++L+  ++  G+   P +  YN +I  L   D V+  F  F  +
Sbjct: 262 NALIHGLAREQGVSEALKLFGSVLRQGYE--PEVPTYNILIDGLLKEDRVNEAFELFSGL 319

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
           V HG  PD++TY +  + L K  RV +      +M +    P  ++    I  L      
Sbjct: 320 VKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRV 379

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR----RILIYEVT 468
           + A  + + +   G  P   S N L+ G    G+        +EML R     ++ Y + 
Sbjct: 380 DEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNIL 439

Query: 469 MHKLKKA 475
           +  L KA
Sbjct: 440 VDGLCKA 446



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 72/341 (21%), Positives = 141/341 (41%), Gaps = 37/341 (10%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N+++D L K  R  + +     + + G+     T+    D  C AG+ ++A++    M 
Sbjct: 296 YNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMD 355

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G   DVV+ N++++ +C+++      +       K   P+  SF  L+ G  + G  +
Sbjct: 356 EKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWK 415

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           +A  TF EM++R       V+ Y   +  L + +Q                         
Sbjct: 416 KAMTTFKEMLKR--GVKPTVVTYNILVDGLCKARQEGRI--------------------- 452

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
                        A+ L+D M+  G   +P+++ Y+A+I  L     +D+  R    M  
Sbjct: 453 -----------KEAITLFDAMIEKG--RVPDVVTYSALIDGLGKAGKLDDARRLLGAMEA 499

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 414
            G  P+  TYN +   L    +V E  + F  M++    P  +   T I+ L   +  + 
Sbjct: 500 KGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEMVDK 559

Query: 415 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 455
           A+ +++  LE G++P       L+ GL  + R+ +  +  +
Sbjct: 560 ALALFDGSLEAGVVPTSGMYFSLIDGLCAVARVDEALKLLQ 600



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/273 (21%), Positives = 118/273 (43%), Gaps = 13/273 (4%)

Query: 207 NRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
           +++ +I  PD  +  ILL    K G +E+A++   +++ +   +   +  +  ++  L R
Sbjct: 6   DKLVRIYSPDAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGLCD---ISTFNIYISGLCR 62

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNL 326
             ++ +A      M+    +P    ++  L  L      + A  L++ M+  G++  P++
Sbjct: 63  ASRIGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYS--PDV 120

Query: 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 386
           + YN ++   C    +D   + FD  V  G  PD +TYN +     K  ++ E ++    
Sbjct: 121 VTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQR 180

Query: 387 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL-RNLG 445
           M+     P  +   + +  L      +   E    I++ G  P   + + L+ GL R L 
Sbjct: 181 MVSESLVPDVVTYNSLVNGLCKNGRVD---EARMLIVDKGFSPNVITYSTLISGLCRELR 237

Query: 446 RLSDVRRFAEEML----NRRILIYEVTMHKLKK 474
           RL   R+  E+M+       I+ Y   +H L +
Sbjct: 238 RLESARQLLEKMVLNGCKPDIVSYNALIHGLAR 270



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 68/153 (44%)

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           +N  I  LC    + +    FD M  HG +P+ +TYN +   L    R+ + +  +  MI
Sbjct: 53  FNIYISGLCRASRIGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMI 112

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
           K  + P  +   T +       + + A++I++  ++ G +P   + N L+ G     +L 
Sbjct: 113 KAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLD 172

Query: 449 DVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
           + +R  + M++  ++   VT + L        R
Sbjct: 173 EAQRILQRMVSESLVPDVVTYNSLVNGLCKNGR 205


>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
 gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 165/354 (46%), Gaps = 13/354 (3%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP----TFASIFDSYCGAGKYDEAVMS 169
           Y+ N++++ L    R   +  A+ V+ +   L +     TF ++ +  C  G+  EAV  
Sbjct: 128 YSLNILINCLC---RLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGL 184

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWE 228
           F+ M   G + DV++ +++++ +C+  N TS AL+ L +++ K   P+  ++  +++   
Sbjct: 185 FNEMVRRGHQPDVISYSTVINGLCKSGN-TSMALQLLRKMEEKGCKPNLVAYTTIIDSLC 243

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           K+  V +A     EMV+R    P  V+ Y T L        ++EA      M G N  P 
Sbjct: 244 KDTLVNDAMDLLSEMVDR--GIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPN 301

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
              F+  +D L K    + A  +++ M   G    PN   YNA++   C N+ +D   + 
Sbjct: 302 TVTFTILVDGLCKEGMVSEARCVFEAMTKKGAE--PNAYTYNALMDGYCLNNQMDEAQKV 359

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
            D MV  G  P   +YN++     K +R+ E +    EM + E  P  +  +T +  L  
Sbjct: 360 LDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQ 419

Query: 409 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
              P+ A+ ++  +  +G+LP   + + LL GL   G L +  +  + M   +I
Sbjct: 420 VGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKI 473



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 88/397 (22%), Positives = 160/397 (40%), Gaps = 40/397 (10%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F     RG +    +++ +++ L K+G        +R M+E G   +L  + +I DS C 
Sbjct: 185 FNEMVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCK 244

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
               ++A+     M   G+  DVV  +++L   C   +     + F   V + V P+  +
Sbjct: 245 DTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVT 304

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           F IL++G  KEG V EA   F  M ++      +   Y   +       Q+DEA K L +
Sbjct: 305 FTILVDGLCKEGMVSEARCVFEAMTKK--GAEPNAYTYNALMDGYCLNNQMDEAQKVLDI 362

Query: 280 MKGENCFPTLK-----------------------------------FFSNALDILVKLND 304
           M  + C P +                                     +S  +  L ++  
Sbjct: 363 MVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGR 422

Query: 305 STHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTY 364
              A+ L+  M   G  L+P+L+ Y+ ++  LC +  +D   +    M      PD + Y
Sbjct: 423 PQEALNLFKEMCSSG--LLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLY 480

Query: 365 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 424
           N++ E +    ++   ++ F ++  +  QPT       I  LL     + A E++  + +
Sbjct: 481 NILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMED 540

Query: 425 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461
           +G LP   S N ++ G       S   R  +EM+ +R
Sbjct: 541 DGFLPNSCSYNVIIQGFLQNQDSSTAIRLIDEMVGKR 577



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 122/274 (44%), Gaps = 13/274 (4%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSL-PTFASIFDSYCG 159
           F     +G   + Y +N ++D    N + ++    + +M + G   +  ++  + + YC 
Sbjct: 325 FEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCK 384

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD----P 215
             + DEA      MS   +  D V  ++L+  +C    Q  R  E LN  K++      P
Sbjct: 385 RRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLC----QVGRPQEALNLFKEMCSSGLLP 440

Query: 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK 275
           D  +++ LL+G  K G+++EA K    M E  +  P+ VL Y   +  +    +++ A +
Sbjct: 441 DLMTYSTLLDGLCKHGHLDEALKLLKSMQES-KIEPDIVL-YNILIEGMFIAGKLEVAKE 498

Query: 276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGL 335
               +  +   PT++ ++  +  L+K   S  A +L+  M   GF  +PN   YN +I  
Sbjct: 499 LFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGF--LPNSCSYNVIIQG 556

Query: 336 LCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFE 369
              N D     R  D+MV      DS T+ M+ +
Sbjct: 557 FLQNQDSSTAIRLIDEMVGKRFSADSSTFQMLLD 590



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/265 (20%), Positives = 114/265 (43%), Gaps = 8/265 (3%)

Query: 232 NVEEANKTFGEMVERFEWNPE-HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           ++++A  +F  M+     NP   V+ +  FL ++ + KQ    +     M        + 
Sbjct: 72  SIDDALASFYRMLR---MNPRPSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVY 128

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
             +  ++ L +LN    A+ +   M  +G  + P+ I +N +I   C   ++      F+
Sbjct: 129 SLNILINCLCRLNHVVFAISVLGKMFKLG--IQPDAITFNTLINGRCIEGEIKEAVGLFN 186

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
           +MV  G  PD ++Y+ +   L K+       +   +M +   +P  +   T I  L    
Sbjct: 187 EMVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDT 246

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 470
               A+++ + +++ GI P   + + +L G  +LG L++      EM+ R ++   VT  
Sbjct: 247 LVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFT 306

Query: 471 KLKKAFYNES--RSMRDIFDSLERR 493
            L      E      R +F+++ ++
Sbjct: 307 ILVDGLCKEGMVSEARCVFEAMTKK 331


>gi|224117122|ref|XP_002317482.1| predicted protein [Populus trichocarpa]
 gi|222860547|gb|EEE98094.1| predicted protein [Populus trichocarpa]
          Length = 433

 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 100/386 (25%), Positives = 173/386 (44%), Gaps = 13/386 (3%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQ--RLSPYAWNLMVDVLGKNGRFEQMWNAVR 137
           T DLV +VL+        A  FF W  +     LS   +N ++D+LG+  RFE++   + 
Sbjct: 2   TQDLVLKVLKRHRSDWKPAYIFFNWVSKEGTISLSSCVYNEILDILGRMRRFEELTLVLD 61

Query: 138 VM-KEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
            M K +G +   T+  + + Y GA   +EA+ +F+     G+E D+V+   LL  +CR +
Sbjct: 62  EMSKREGFVDEDTYRVLVNRYAGAHMVEEAIGAFNKRRELGLELDLVSFQKLLMYLCRYK 121

Query: 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
           +    A   L+        D  +  I+L GW   GNV EA + + +++   +  P+ V  
Sbjct: 122 H-VDVAETLLHSKGHEFGVDIKTMNIVLNGWCVLGNVREAKRFWKDIIAS-KCKPD-VFT 178

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
           Y TF+  L    ++  A+K    M    C P +   +  +D L        A+ +++ M 
Sbjct: 179 YGTFIKALTNKGKLGTAMKLYEAMWKMQCKPDVVICNCVIDALCFKKRVPEALAVFEGMK 238

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH--GAFPDSLTYNMIFECLIKN 374
             G   +PN+  YN++I  +C    ++ V+   D+M        PD +T+N + + L   
Sbjct: 239 ERG--CIPNVATYNSLIKHMCKIGRMEKVYELLDEMQEKKGSCMPDEITFNYLLKSL--- 293

Query: 375 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 434
           K+  EV      M  N  +     C   + +  D D  E     W  + +NG+     S 
Sbjct: 294 KKPEEVAGVLERMKINGCKMNNDTCNLLLKLHADWDSEEKVRYTWEEMEKNGLGLDRRSY 353

Query: 435 NELLVGLRNLGRLSDVRRFAEEMLNR 460
             ++  L + GR+ D  R+  EM N+
Sbjct: 354 TIMIHWLYDKGRVEDALRYFGEMENK 379



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 30/132 (22%), Positives = 55/132 (41%)

Query: 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389
           N V+   C   +V    RF+  ++     PD  TY    + L    ++    K +  M K
Sbjct: 145 NIVLNGWCVLGNVREAKRFWKDIIASKCKPDVFTYGTFIKALTNKGKLGTAMKLYEAMWK 204

Query: 390 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 449
            + +P  + C   I  L        A+ ++  + E G +P  A+ N L+  +  +GR+  
Sbjct: 205 MQCKPDVVICNCVIDALCFKKRVPEALAVFEGMKERGCIPNVATYNSLIKHMCKIGRMEK 264

Query: 450 VRRFAEEMLNRR 461
           V    +EM  ++
Sbjct: 265 VYELLDEMQEKK 276


>gi|125542792|gb|EAY88931.1| hypothetical protein OsI_10416 [Oryza sativa Indica Group]
          Length = 796

 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 107/441 (24%), Positives = 190/441 (43%), Gaps = 18/441 (4%)

Query: 49  ISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSS----AVDFFRW 104
           +S+ AR+    L H ++  + S     G+ P+    + VL     SPS+    ++D FR 
Sbjct: 142 LSAYARLR---LPHLAAQLLHSLRRRRGVRPSLQAANAVLSALSRSPSTLPQASLDVFRS 198

Query: 105 AGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAG 161
                RL P  Y +NL+V      G        +  M+  G+     T+ ++ +++C  G
Sbjct: 199 LIE-LRLHPNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKG 257

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE--NQTSRALEFLNRVKKIVDPDGDS 219
              EA      M   G+       N+L+SA  R     Q ++ +E +       +PD  +
Sbjct: 258 MLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYG--FEPDLRT 315

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           + +L  G  + G V+EA +   EM ER       V+ Y T +    + +   +AL+ L  
Sbjct: 316 YNVLAMGLCQAGKVDEAFRLKDEM-ERLGTALPDVVTYNTLVDACFKWRCSSDALRLLEE 374

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
           M+ +   PTL   +  +  L K      A+   + +   G  L P++I YN +I   C  
Sbjct: 375 MRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEG--LAPDVITYNTLIDAYCKA 432

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
            +V   F   D+MV  G   D+ T N +   L K KR  + E+  H   +  + P  ++ 
Sbjct: 433 GNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSY 492

Query: 400 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
            T +        PE A+ +W+ ++E  ++P  ++ N L+ GL  + RL +      E + 
Sbjct: 493 GTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNEFVE 552

Query: 460 RRILIYEVTMHKLKKAFYNES 480
           + ++  E T + +  A+  E 
Sbjct: 553 KGLVPDETTYNIIIHAYCKEG 573



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/341 (21%), Positives = 146/341 (42%), Gaps = 40/341 (11%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G + +    N++V  L K G+ E+    +  + E+G+   + T+ ++ D+YC AG   +
Sbjct: 378 KGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAK 437

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A    D M   G++ D   +N++L  +C+ +          +  ++   PD  S+  ++ 
Sbjct: 438 AFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMA 497

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
            + KE N E A + + +M+ER +  P  +  Y T +  L R +++ EA+           
Sbjct: 498 AYFKEYNPEPALRLWDQMIER-KLIPS-ISTYNTLIKGLCRMERLKEAID---------- 545

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
                          KLN+                 L+P+   YN +I   C   D++N 
Sbjct: 546 ---------------KLNEFVEK------------GLVPDETTYNIIIHAYCKEGDLENA 578

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
           FRF ++MV +   PD +T N +   L  + ++ +  K F   ++   +   +   T I  
Sbjct: 579 FRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQS 638

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 446
           +    + + A+  ++ +   G+ P   + N +L  L   GR
Sbjct: 639 MCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGR 679



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 100/425 (23%), Positives = 168/425 (39%), Gaps = 49/425 (11%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N +V    + G  +Q    V  M   G    L T+  +    C AGK DEA    D M 
Sbjct: 281 YNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAMGLCQAGKVDEAFRLKDEME 340

Query: 175 MHGVE-QDVVAVNSLLSAICRQENQTSRAL------------------------------ 203
             G    DVV  N+L+ A C +   +S AL                              
Sbjct: 341 RLGTALPDVVTYNTLVDA-CFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGK 399

Query: 204 --EFLNRVKKIVD----PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
             E L +++KI +    PD  ++  L++ + K GNV +A     EMV +        L  
Sbjct: 400 LEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTL-- 457

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317
            T L  L + K+ ++A + L         P    +   +    K  +   A++LWD M  
Sbjct: 458 NTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQM-- 515

Query: 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
           I   L+P++  YN +I  LC  + +       ++ V  G  PD  TYN+I     K   +
Sbjct: 516 IERKLIPSISTYNTLIKGLCRMERLKEAIDKLNEFVEKGLVPDETTYNIIIHAYCKEGDL 575

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 437
               +F ++M++N ++P  + C T +  L    + + A++++   +E G      + N L
Sbjct: 576 ENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTL 635

Query: 438 LVGLRNLGRLSDVRRFAEEM----LNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERR 493
           +  +  +G +     F ++M    L      Y V +  L +A    S    ++   L   
Sbjct: 636 IQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEA--GRSEEAHNMLHKLADS 693

Query: 494 CKTSQ 498
            K SQ
Sbjct: 694 GKLSQ 698


>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
 gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
          Length = 564

 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 96/412 (23%), Positives = 175/412 (42%), Gaps = 48/412 (11%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRV-MKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           +N+++  L + G   +     R  M  DGV  ++ T+ +I +  C +      +  F+ +
Sbjct: 4   YNIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEEL 63

Query: 174 SMHGVEQDVVAVNSLLSAICRQEN-QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
              G   DVV  N+L+ ++C+  + + +R L      +  V P+  ++++L+ G  K G 
Sbjct: 64  VERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCV-PNVVTYSVLINGLCKVGR 122

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN--CFPTLK 290
           ++EA +   EM  +      +++ Y +FL  L +     EA + +R ++  +    P   
Sbjct: 123 IDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTV 182

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
            FS  +D L K      A  ++D M+  G+  +PN+I YNA++  LC  D ++      +
Sbjct: 183 TFSTLIDGLCKCGQIDEACSVFDDMIAGGY--VPNVITYNALVNGLCKADKMERAHAMIE 240

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH------------------------- 385
            MV  G  PD +TY+++ +   K  RV E  +  H                         
Sbjct: 241 SMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAG 300

Query: 386 ---------------EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 430
                          EM+    QP  +     I  L  A + E A +I + +   G+ P 
Sbjct: 301 ACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPN 360

Query: 431 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 482
             + N L+ GL   GR+ +  +F EEM++   +   +T   L  A    SR+
Sbjct: 361 VVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRT 412



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 164/356 (46%), Gaps = 14/356 (3%)

Query: 110 RLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEA 166
           R+SP    ++ ++D L K G+ ++  +    M   G V ++ T+ ++ +  C A K + A
Sbjct: 176 RVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERA 235

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK------IVDPDGDSF 220
               + M   GV  DV+  + L+ A C+  ++   ALE L+ +        ++ PD  +F
Sbjct: 236 HAMIESMVDKGVTPDVITYSVLVDAFCKA-SRVDEALELLHGMASRGCTPNVLVPDKVTF 294

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
            IL+ G  K GN E+A+  F EMV +    P+ V+ +   +  L +  QV+ A   L +M
Sbjct: 295 NILIAGACKAGNFEQASALFEEMVAK-NLQPD-VMTFGALIDGLCKAGQVEAARDILDLM 352

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
                 P +  ++  +  L K      A Q  + MV  G   +P+ I Y +++  LC   
Sbjct: 353 GNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSG--CVPDSITYGSLVYALCRAS 410

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
             D+  +   ++   G  PD++TYN++ + L K+ +  +      EM+    QP     A
Sbjct: 411 RTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFA 470

Query: 401 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 456
              + L  +      +E+   +L  G+LP   + + +L  +   G+L DV+   +E
Sbjct: 471 ACFSGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSILDWVCRSGKLDDVKAMIKE 526



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 153/355 (43%), Gaps = 10/355 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSFDV 172
           +N  +D L K     +    +R +++  +   P   TF+++ D  C  G+ DEA   FD 
Sbjct: 147 YNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDD 206

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M   G   +V+  N+L++ +C+ +          + V K V PD  ++++L++ + K   
Sbjct: 207 MIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASR 266

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK----QVDEALKFLRVMKGENCFPT 288
           V+EA +    M  R    P  ++  +     LI G       ++A      M  +N  P 
Sbjct: 267 VDEALELLHGMASR-GCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPD 325

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
           +  F   +D L K      A  + D+M  +G  + PN++ YNA++  LC +  ++   +F
Sbjct: 326 VMTFGALIDGLCKAGQVEAARDILDLMGNLG--VPPNVVTYNALVHGLCKSGRIEEACQF 383

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
            ++MV  G  PDS+TY  +   L +  R  +  +   E+    W P  +     +  L  
Sbjct: 384 LEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWK 443

Query: 409 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
           + + E AI +   ++  G  P   +      GL   G L+        +L + +L
Sbjct: 444 SGKTEQAITVLEEMVGKGHQPDSFTFAACFSGLHRSGNLAGTMELLRVVLAKGML 498



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 74/351 (21%), Positives = 137/351 (39%), Gaps = 53/351 (15%)

Query: 186 NSLLSAICRQENQTSRALEFLNR--VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
           N +L ++CR    T+RALE       +  V P   ++  ++ G  K  ++    + F E+
Sbjct: 5   NIVLQSLCRA-GDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEEL 63

Query: 244 VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303
           VER   +P+ V+ Y T + +L +   ++EA +    M    C P +  +S  ++ L K+ 
Sbjct: 64  VERGH-HPD-VVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVG 121

Query: 304 DSTHAVQLWDIMVGIGFNLMPNLIMYNA-------------------------------- 331
               A +L   M     +++PN+I YN+                                
Sbjct: 122 RIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDT 181

Query: 332 -----VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 386
                +I  LC    +D     FD M+  G  P+ +TYN +   L K  ++         
Sbjct: 182 VTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIES 241

Query: 387 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG-----ILPLEASANELLVGL 441
           M+     P  +  +  +     A   + A+E+ + +   G     ++P + + N L+ G 
Sbjct: 242 MVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGA 301

Query: 442 RNLGRLSDVRRFAEEMLNRR----ILIYEVTMHKLKKAFYNESRSMRDIFD 488
              G         EEM+ +     ++ +   +  L KA   +  + RDI D
Sbjct: 302 CKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKA--GQVEAARDILD 350


>gi|147793827|emb|CAN62355.1| hypothetical protein VITISV_022418 [Vitis vinifera]
          Length = 546

 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 105/403 (26%), Positives = 181/403 (44%), Gaps = 18/403 (4%)

Query: 63  ASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYA-----WN 117
           +S  +IE AL    +  T DLV +VL+        A  FF WA R    S Y+      N
Sbjct: 100 SSVSEIEGALHQCRLSLTDDLVLDVLKRHRSDWRPAYVFFNWASRCGXESGYSPGCGVHN 159

Query: 118 LMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176
            ++D+LG+  RF +M      M K  G+ +  TF  + + Y  A K +EAV  F      
Sbjct: 160 EILDILGRMRRFHEMTQLFDEMSKRKGLXNERTFGVLLNRYAAAHKTEEAVKIFYKRKGL 219

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVEE 235
           G E D++A  +LL ++CR ++      EFL   KK    PD  S  ++L GW   G++ E
Sbjct: 220 GFELDLIAFQTLLMSLCRYKH--VEMAEFLFHSKKNEFPPDIKSMNVILNGWCVLGSLRE 277

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
           A + + +++   +  P+    Y  F+ +L +  ++  A+K  + M  + C P +   +  
Sbjct: 278 AKRFWNDIITS-KCKPDK-FTYGIFINSLTKAGKLSTAVKLFQAMWEKGCNPDVAICNCI 335

Query: 296 LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
           +D L        A+++   M     +  P++  YN++I  LC     + V+   D M   
Sbjct: 336 IDALCFKKRIPEALEVLREMNER--DCQPDVATYNSLIKHLCKIQRFEKVYELLDDMEQK 393

Query: 356 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 415
           G  P++ TY  +   L   K+  EV      M +N  +    +C   I  L      E+ 
Sbjct: 394 GCLPNARTYGYL---LKSTKKPEEVPGILERMERNGCRMNS-DCYNLILKLYMDWGYELK 449

Query: 416 IE-IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           +    + +  NG+ P + +   ++ GL + GR+ D   + ++M
Sbjct: 450 LRSTLDEMERNGMGPDQRTYTIMIHGLYDKGRMDDALSYFKQM 492



 Score = 39.3 bits (90), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 44/206 (21%), Positives = 86/206 (41%), Gaps = 15/206 (7%)

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF 320
           L  L R ++  E  +    M         + F   L+     + +  AV+++    G+GF
Sbjct: 162 LDILGRMRRFHEMTQLFDEMSKRKGLXNERTFGVLLNRYAAAHKTEEAVKIFYKRKGLGF 221

Query: 321 NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAF----PDSLTYNMIFE--CLIKN 374
            L  +LI +  ++  LC    V+       + +FH       PD  + N+I    C++ +
Sbjct: 222 EL--DLIAFQTLLMSLCRYKHVE-----MAEFLFHSKKNEFPPDIKSMNVILNGWCVLGS 274

Query: 375 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 434
            R  E ++F++++I ++ +P        I  L  A +   A++++  + E G  P  A  
Sbjct: 275 LR--EAKRFWNDIITSKCKPDKFTYGIFINSLTKAGKLSTAVKLFQAMWEKGCNPDVAIC 332

Query: 435 NELLVGLRNLGRLSDVRRFAEEMLNR 460
           N ++  L    R+ +      EM  R
Sbjct: 333 NCIIDALCFKKRIPEALEVLREMNER 358


>gi|125539937|gb|EAY86332.1| hypothetical protein OsI_07707 [Oryza sativa Indica Group]
          Length = 584

 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 108/454 (23%), Positives = 187/454 (41%), Gaps = 50/454 (11%)

Query: 47  PYISSSARIICEILAHASSDDIESALACTGIIPTPD-LVHEVLQLSYDSPSSAVDFFRW- 104
           P   + A +I ++ A   + +    LA  G    PD + +  +   Y          RW 
Sbjct: 96  PDAGTCAALIKKLSASGRTAEARRVLAACG----PDVMAYNAMMAGYCGAGQVDAARRWC 151

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE----DGVLSLPTFASIFDSYCGA 160
           A R      Y  + ++  L   GR     NA+ V+ E      V  + T+  + ++ C  
Sbjct: 152 AERAVERDAYTCDTLIRGLCGRGR---TANALAVLDEMLRRRCVPDVVTYTILLEATCKR 208

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDS 219
             Y +A+   D M   G   D+V  N +++ IC QE +   A+EFL  +     +P+  S
Sbjct: 209 SGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGIC-QEGRVDDAIEFLKNLPSYGCEPNTVS 267

Query: 220 FAILLEGWEKEGNVEEANKTFGEM----------------------------VERFEWNP 251
           + I+L+G       E+A +  GEM                            +E  E  P
Sbjct: 268 YNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIP 327

Query: 252 EH-----VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
           ++      L+Y   L    + K++D+A+ FL +M    C+P +  ++  L  L +  +  
Sbjct: 328 KYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVD 387

Query: 307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM 366
            AV+L   +   G    P LI YN VI  L             ++MV  G  PD +TY+ 
Sbjct: 388 VAVELLHQLKDKG--CAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYST 445

Query: 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 426
           I   L +  R+ +  + F ++     +P  +     I  L    E   AI+++ Y++ NG
Sbjct: 446 IAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNG 505

Query: 427 ILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
            +P E++   L+ GL   G + + R   +E+ +R
Sbjct: 506 CMPNESTYTILIEGLAYEGLIKEARDLLDELCSR 539



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/381 (23%), Positives = 169/381 (44%), Gaps = 13/381 (3%)

Query: 102 FRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAG 161
            R  G  +R        ++  L  +GR  +   A RV+   G   +  + ++   YCGAG
Sbjct: 87  LRLVGSARRPDAGTCAALIKKLSASGRTAE---ARRVLAACGP-DVMAYNAMMAGYCGAG 142

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSF 220
           + D A       +   VE+D    ++L+  +C +  +T+ AL  L+  +++   PD  ++
Sbjct: 143 QVDAA---RRWCAERAVERDAYTCDTLIRGLCGR-GRTANALAVLDEMLRRRCVPDVVTY 198

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
            ILLE   K    ++A K   EM  R +     ++ Y   +  + +  +VD+A++FL+ +
Sbjct: 199 TILLEATCKRSGYKQAMKLLDEM--RDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNL 256

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
               C P    ++  L  L        A +L   M   G    PN++ +N +I  LC   
Sbjct: 257 PSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCP--PNVVTFNMLISFLCRKG 314

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
            V+      +Q+  +G  P+SL+YN +     K K++ +   F   M+     P  ++  
Sbjct: 315 LVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYN 374

Query: 401 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           T +T L  + E ++A+E+ + + + G  P+  S N ++ GL   G+  +      EM+++
Sbjct: 375 TLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSK 434

Query: 461 RILIYEVTMHKLKKAFYNESR 481
            +    +T   +      E R
Sbjct: 435 GLQPDIITYSTIAAGLCREDR 455



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/135 (22%), Positives = 65/135 (48%), Gaps = 1/135 (0%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++N ++D L K G+ ++    +  M   G+   + T+++I    C   + ++A+ +F  +
Sbjct: 407 SYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKV 466

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G+  + V  N+++  +C++    S    F   +     P+  ++ IL+EG   EG +
Sbjct: 467 QDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLI 526

Query: 234 EEANKTFGEMVERFE 248
           +EA     E+  R E
Sbjct: 527 KEARDLLDELCSRGE 541


>gi|356499705|ref|XP_003518677.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Glycine max]
          Length = 500

 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 102/458 (22%), Positives = 197/458 (43%), Gaps = 31/458 (6%)

Query: 39  RFPTHLDAPYISSSARIICEILAHASSDDIE----------------SALACTGIIPTPD 82
           RF     + YI  S  I   +L+   +DD++                 +L  +G+  + D
Sbjct: 5   RFSFQSPSNYIPPSTLIRHRLLSSNQNDDVQKVFGILSSTSTPEQLKQSLKSSGVFLSND 64

Query: 83  LVHEVLQ---LSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAV- 136
           ++ +VL+    S+ +PS  ++FFR+ GR  G   S ++ + M+ +LG++  F Q+W  + 
Sbjct: 65  VIDQVLKRVRFSHGNPSQTLEFFRYTGRRKGFYHSSFSLDTMLYILGRSRMFGQVWELLI 124

Query: 137 -RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
               K+   ++  T   +           + V SF        E D    N+LL  +C Q
Sbjct: 125 EARRKDQTAITARTVMVVLGRIAKVCSVRQTVESFRKFRKLVQEFDTNCFNALLRTLC-Q 183

Query: 196 ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
           E   + A    + +K    P+  +F ILL GW+     E+A+  F EM E     P+ V+
Sbjct: 184 EKSMADARNVYHSLKHRFRPNLQTFNILLSGWKTP---EDADLFFKEMKE-MGVTPD-VV 238

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
            Y + +    +G+++++A K L  M+ ++  P +  ++  +  L  +     A  +   M
Sbjct: 239 TYNSLMDVYCKGREIEKAYKMLDEMRDQDFSPDVITYTCIIGGLGLIGQPDKARNVLKEM 298

Query: 316 VGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 375
              G    P+   YNA I   C    + +     ++MV  G  P++ TYN+ F     + 
Sbjct: 299 KEYG--CYPDAAAYNAAIRNFCIAKRLGDAHGLVEEMVTKGLSPNATTYNLFFRVFYWSN 356

Query: 376 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 435
            +      +  M+     P   +C   I +    ++ E+A++ W  ++E G       ++
Sbjct: 357 DLQSSWNMYQRMMVEGCLPNTQSCMFLIRLFRRHEKVEMALQFWGDMVEKGFGSYTLVSD 416

Query: 436 ELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 473
            L   L ++G+L +  +   EM+ +      V+  ++K
Sbjct: 417 VLFDLLCDMGKLEEAEKCFLEMVEKGQKPSHVSFRRIK 454



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 82/213 (38%), Gaps = 15/213 (7%)

Query: 268 KQVDEALKFLRVMKGE---NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
           +Q  E+ +  R +  E   NCF       NAL  L  L          ++   +     P
Sbjct: 153 RQTVESFRKFRKLVQEFDTNCF-------NAL--LRTLCQEKSMADARNVYHSLKHRFRP 203

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           NL  +N ++      +D D    FF +M   G  PD +TYN + +   K + + +  K  
Sbjct: 204 NLQTFNILLSGWKTPEDAD---LFFKEMKEMGVTPDVVTYNSLMDVYCKGREIEKAYKML 260

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
            EM   ++ P  +     I  L    +P+ A  +   + E G  P  A+ N  +      
Sbjct: 261 DEMRDQDFSPDVITYTCIIGGLGLIGQPDKARNVLKEMKEYGCYPDAAAYNAAIRNFCIA 320

Query: 445 GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFY 477
            RL D     EEM+ + +     T +   + FY
Sbjct: 321 KRLGDAHGLVEEMVTKGLSPNATTYNLFFRVFY 353


>gi|302784232|ref|XP_002973888.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
 gi|300158220|gb|EFJ24843.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
          Length = 399

 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 169/374 (45%), Gaps = 33/374 (8%)

Query: 97  SAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS--LPTFAS 152
           +A+D  R   +  G   +P  +N  V  L K+G+  +    V+ MK DG     + TF +
Sbjct: 36  AAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMK-DGACKPDVVTFNT 94

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI 212
           +    C AG+ DEA    D M   G   ++V  N+L++ +     ++  A+  +  +   
Sbjct: 95  LIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGL-SSAGRSGEAVLVMQGM--T 151

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
             PD  ++  ++ G+ K G ++ A     EM +R   +P+    Y   +  L +   + +
Sbjct: 152 TTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPD-TFTYSILINGLCKSSNLRK 210

Query: 273 ALKFLRVMKG-ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA 331
           A + L+ M G ++C  ++  F+  +D   K  D   A +L   M+  G    P+++ Y+ 
Sbjct: 211 ADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHG--CAPDVVTYST 268

Query: 332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
           +I  LC   DVD  F   ++MV  G  PD +TY ++   L K  ++ E  +    M+++ 
Sbjct: 269 IIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDG 328

Query: 392 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 451
             P  +  +     L   D+ ++                   AN+LL  +R+ GR++DV 
Sbjct: 329 CTPNAVTYSLVFDGLCKIDKLDM-------------------ANDLLTSIRDKGRITDVV 369

Query: 452 RFAEEMLN--RRIL 463
            F   +L+  +R+L
Sbjct: 370 AFEALLLSVKKRLL 383



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 115/253 (45%), Gaps = 13/253 (5%)

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           K G V EA +    M +     P+ V+ + T +  L +  ++DEA + L  M+       
Sbjct: 66  KSGKVPEAMEVVKNMKDG-ACKPD-VVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAAN 123

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
           L  ++  ++ L     S  AV     +V  G    P+   YNA+I   C + ++D  + F
Sbjct: 124 LVTYNTLINGLSSAGRSGEAV-----LVMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGF 178

Query: 349 FDQMVFH-GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI-KNEWQPTPLNCATAITML 406
            ++M    G  PD+ TY+++   L K+  + + ++   EMI + +   + +   T +   
Sbjct: 179 LEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGY 238

Query: 407 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR----I 462
             A + + A E+ + +LE+G  P   + + ++ GL   G +       E+M++R     +
Sbjct: 239 CKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDV 298

Query: 463 LIYEVTMHKLKKA 475
           + Y V +  L KA
Sbjct: 299 VTYTVLVTGLCKA 311


>gi|326510087|dbj|BAJ87260.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326520816|dbj|BAJ92771.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1092

 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 104/401 (25%), Positives = 181/401 (45%), Gaps = 20/401 (4%)

Query: 67  DIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAG----RGQRLSPYAWNLMVDV 122
           D+  A+A  G++PT    + VL L++     A       G    RG R + Y++ + + V
Sbjct: 192 DVYKAMAADGVVPTVR-TYSVLMLAFGKRRDAETVVGLLGEMEARGVRPNVYSYTICIRV 250

Query: 123 LGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD 181
           LG+ GR E+ +  +R M+E+G    + T   +    C AG+  +A   F  M     + D
Sbjct: 251 LGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAGRLADAKDVFWKMKASDQKPD 310

Query: 182 VVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD---SFAILLEGWEKEGNVEEANK 238
            V   +LL   C     +    E  N +K   D   D   S+   ++   + G V+EA  
Sbjct: 311 RVTYITLLDK-CGDSGDSRSVSEIWNALK--ADGYNDNVVSYTAAVDALCQVGRVDEALD 367

Query: 239 TFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDI 298
            F EM ++     ++  +Y + +   ++  + + AL+    M      PT   +++ L I
Sbjct: 368 VFDEMKQKGIIPQQY--SYNSLISGFLKADRFNRALELFNHMNIHG--PTPNGYTHVLFI 423

Query: 299 LV--KLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG 356
               K  +S  A++ +++M   G  ++P+++  NAV+  L     +    R F ++   G
Sbjct: 424 NYHGKSGESLKALKRYELMKSKG--IVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMG 481

Query: 357 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 416
             PD++TY M+ +C  K     E  K F EMI+N   P  L   + I ML  A     A 
Sbjct: 482 ISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLYKAGRGNEAW 541

Query: 417 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           +I+  + E  + P + + N LL GL   G++ +V +  E M
Sbjct: 542 KIFYELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGM 582



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 88/417 (21%), Positives = 186/417 (44%), Gaps = 31/417 (7%)

Query: 96  SSAVDFFRWAGRGQR------------LSPY--AWNLMVDVLGKNGRFEQMWNAVRVMKE 141
           +S +D    AGRG              L P    +N ++  LG+ G+ +++   +  M  
Sbjct: 525 NSLIDMLYKAGRGNEAWKIFYELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNS 584

Query: 142 DGVLSLP----TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           +   S P    T+ ++ D  C  G+ + A+     M+M+G   D+ + N+++  + + E+
Sbjct: 585 N---SFPPNIITYNTVLDCLCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYGLVK-ED 640

Query: 198 QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
           +   A     ++KK++ PD  +   +L  + + G ++EA  T  E + + +   +   + 
Sbjct: 641 RLDEAFWMFCQMKKVLAPDYATVCTILPSFVRSGLMKEALHTVREYILQPDSKVDRS-SV 699

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317
            + +  +++    +++++F   +          F S  +  L K  ++  A +L      
Sbjct: 700 HSLMEGILKRDGTEKSIEFAENIASSGLLLDDLFLSPIIRHLCKHKEALAAHELVKKFEN 759

Query: 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
           +G +L      YNA+I  L + D +D     F +M   G  PD  TY++I + + K+ R+
Sbjct: 760 LGVSLKTG--SYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMGKSMRI 817

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 437
            ++ K   EM    ++ T +   T I+ L+ +   + AI ++  ++  G  P   +   L
Sbjct: 818 EDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPL 877

Query: 438 LVGLRNLGRLSDVRRFAEEML----NRRILIYEVTMHKLKKAFYNESRSMRDIFDSL 490
           L GL   G + D     +EML         IY + ++  + A   ++  + ++F+S+
Sbjct: 878 LDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIA--GDTEKVCELFESM 932



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 158/348 (45%), Gaps = 12/348 (3%)

Query: 117  NLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176
            +LM  +L ++G  + +  A  +     +L     + I    C   K+ EA+ + +++   
Sbjct: 701  SLMEGILKRDGTEKSIEFAENIASSGLLLDDLFLSPIIRHLC---KHKEALAAHELVKKF 757

Query: 177  ---GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGN 232
               GV     + N+L+  +   E+    A E  + +K++  DPD  ++ ++L+   K   
Sbjct: 758  ENLGVSLKTGSYNALICGLV-DEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMGKSMR 816

Query: 233  VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
            +E+  K   EM  +  +   +V  Y T +  L++ K +DEA+     +  E   PT   +
Sbjct: 817  IEDMLKIQEEMHNK-GYKSTYV-TYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTY 874

Query: 293  SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
               LD L+K  +   A  L+D M+  G    PN  +YN ++       D + V   F+ M
Sbjct: 875  GPLLDGLLKDGNIEDAEALFDEMLECGCE--PNCAIYNILLNGYRIAGDTEKVCELFESM 932

Query: 353  VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
            V  G  PD  +Y ++ + L  + R+++   +F ++     +P  +     I  L  +   
Sbjct: 933  VEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRL 992

Query: 413  EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
            E A+ ++N + + GI P   + N L++ L   G+ ++  +  EE+L +
Sbjct: 993  EEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAK 1040



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/317 (21%), Positives = 121/317 (38%), Gaps = 40/317 (12%)

Query: 114  YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDV 172
            + ++L++D +GK+ R E M      M   G  S   T+ +I      +   DEA+  +  
Sbjct: 802  FTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQ 861

Query: 173  MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
            +   G          LL  + +  N       F   ++   +P+   + ILL G+   G+
Sbjct: 862  LMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGD 921

Query: 233  VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
             E+  + F  MVE+   NP+ + +Y   + TL    ++++ L + +              
Sbjct: 922  TEKVCELFESMVEQ-GMNPD-IKSYTVVIDTLCADGRLNDGLSYFK-------------- 965

Query: 293  SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
                             QL D+       L P+LI YN +I  L  +  ++     ++ M
Sbjct: 966  -----------------QLTDM------GLEPDLITYNLLIHGLGKSGRLEEALSLYNDM 1002

Query: 353  VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
               G  P+  TYN +   L K  +  E  K + E++   W+P        I     +  P
Sbjct: 1003 EKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSP 1062

Query: 413  EIAIEIWNYILENGILP 429
            E A   +  ++  G  P
Sbjct: 1063 ENAFAAYGRMIVGGCRP 1079



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/230 (20%), Positives = 93/230 (40%), Gaps = 2/230 (0%)

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
           Y   +  L++     EA+   + M  +   PT++ +S  +    K  D+   V L   M 
Sbjct: 174 YNGLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGLLGEME 233

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
             G    PN+  Y   I +L     ++  +R   +M   G  PD +T  ++ + L    R
Sbjct: 234 ARGVR--PNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAGR 291

Query: 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 436
           + + +  F +M  ++ +P  +   T +    D+ +     EIWN +  +G      S   
Sbjct: 292 LADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYTA 351

Query: 437 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDI 486
            +  L  +GR+ +     +EM  + I+  + + + L   F    R  R +
Sbjct: 352 AVDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRAL 401


>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
 gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 180/371 (48%), Gaps = 7/371 (1%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEA 166
           G  L+ Y  N+MV+ L K+G+F+ + + +  M+ +G+ + + T+ ++  +YC  G  +EA
Sbjct: 113 GIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEA 172

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLE 225
               + M+  G++  +   N++++ +C++  + +RA   L  +  I + PD  ++  LL 
Sbjct: 173 FEIMNSMADKGLKPSLFTYNAIINGLCKK-GRYARAKGILIEMLNIGLSPDTTTYNTLLV 231

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
              +  N  EA + FGEM+ R    P+ ++++ + +    R + +D+AL + R MK    
Sbjct: 232 ESCRRDNFSEAKEIFGEML-RQGVVPD-LVSFSSLIAVFSRNRHLDQALVYFRDMKKFGL 289

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P    ++  +    +  +   A+++ D M+  G  L  ++I YN ++  LC    + + 
Sbjct: 290 VPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVL--DVIAYNTILNGLCKEKMLTDA 347

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
            + FD+MV  GA PD  T+  +     ++  + +    F  M +   +P  +   T I  
Sbjct: 348 DKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDG 407

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 465
                E E A E+W+ ++   I P   +   L+    ++G +S+  R  + M+ + I   
Sbjct: 408 FCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPT 467

Query: 466 EVTMHKLKKAF 476
            VT + + K +
Sbjct: 468 LVTCNTVIKGY 478



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 95/410 (23%), Positives = 181/410 (44%), Gaps = 10/410 (2%)

Query: 56  ICEILAHASSDDIESALACTGIIPTPDLVHEVLQLS--YDSPSSAVDFFRWAGRGQRLSP 113
           +C+   +A +  I   +   G+ P     + +L  S   D+ S A + F    R Q + P
Sbjct: 198 LCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLR-QGVVP 256

Query: 114 --YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSF 170
              +++ ++ V  +N   +Q     R MK+ G++     +  +   YC  G   EA+   
Sbjct: 257 DLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIR 316

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
           D M   G   DV+A N++L+ +C+++  T     F   V++   PD  +F  L+ G  ++
Sbjct: 317 DEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQD 376

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           GN+ +A   FG M +R    P+ ++AY T +    +  ++++A +    M     FP   
Sbjct: 377 GNMTKALSLFGTMTQR-NIKPD-IVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHI 434

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
            +   ++    +   + A +LWD+M+  G  + P L+  N VI   C + D      F  
Sbjct: 435 TYGILINAYCSVGHVSEAFRLWDVMIEKG--IKPTLVTCNTVIKGYCRSGDSSKADEFLG 492

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
           +M+  G  PD ++YN +    ++   + +   + ++M K    P  +     +       
Sbjct: 493 RMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQG 552

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
             + A  +   ++E GI P  ++   L+ G      L++  RF +EML R
Sbjct: 553 RMQEAELVLRKMIEKGINPDRSTYTALINGHVTQDNLNEAFRFHDEMLQR 602



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 151/339 (44%), Gaps = 7/339 (2%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           A +G + S + +N +++ L K GR+ +    +  M   G+     T+ ++    C    +
Sbjct: 180 ADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNF 239

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAI 222
            EA   F  M   GV  D+V+ +SL++   R      +AL +   +KK  + PD   + +
Sbjct: 240 SEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNR-HLDQALVYFRDMKKFGLVPDNVIYTV 298

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+ G+ + GN+ EA K   EM+E  +     V+AY T L  L + K + +A K    M  
Sbjct: 299 LMHGYCRNGNMLEALKIRDEMLE--QGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVE 356

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
               P    F+  +    +  + T A+ L+  M     N+ P+++ YN +I   C   ++
Sbjct: 357 RGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQ--RNIKPDIVAYNTLIDGFCKVGEM 414

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
           +     +D M+    FP+ +TY ++         V E  + +  MI+   +PT + C T 
Sbjct: 415 EKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTV 474

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 441
           I     + +   A E    ++  G+ P   S N L+ G 
Sbjct: 475 IKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGF 513



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 64/326 (19%), Positives = 132/326 (40%), Gaps = 43/326 (13%)

Query: 76  GIIPTPDLVHEVLQLSYDSPSSAVDFFR----WAGRGQRLSPYAWNLMVDVLGKNGRFEQ 131
           G++P  ++++ VL   Y    + ++  +       +G  L   A+N +++ L K      
Sbjct: 288 GLVP-DNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTD 346

Query: 132 MWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS 190
                  M E G L    TF ++   +C  G   +A+  F  M+   ++ D+VA N+L+ 
Sbjct: 347 ADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLID 406

Query: 191 AICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF--- 247
             C+       +  +   + + + P+  ++ IL+  +   G+V EA + +  M+E+    
Sbjct: 407 GFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKP 466

Query: 248 -------------------------------EWNPEHVLAYETFLITLIRGKQVDEALKF 276
                                             P+H+ +Y T +   +R   +D+A  +
Sbjct: 467 TLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHI-SYNTLINGFVREDNMDKAFLW 525

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLL 336
           +  M+ E   P +  ++  ++   +      A  +   M+  G N  P+   Y A+I   
Sbjct: 526 INKMEKEGLLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEKGIN--PDRSTYTALINGH 583

Query: 337 CNNDDVDNVFRFFDQMVFHGAFPDSL 362
              D+++  FRF D+M+  G  PD +
Sbjct: 584 VTQDNLNEAFRFHDEMLQRGFAPDDV 609


>gi|224111364|ref|XP_002315827.1| predicted protein [Populus trichocarpa]
 gi|222864867|gb|EEF01998.1| predicted protein [Populus trichocarpa]
          Length = 472

 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 102/407 (25%), Positives = 178/407 (43%), Gaps = 20/407 (4%)

Query: 67  DIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLS--PYAWNLMVDVLG 124
           ++E  L   G+  T DLV  VL   +    ++  FF WAG  +  S  P A+N M+D+L 
Sbjct: 15  NLEKTLDQLGLELTTDLVLNVLGRLHFEEKTSFRFFMWAGHQKNYSHEPCAYNEMIDILT 74

Query: 125 ----KNGRFEQMWNAVRVMKEDG--VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGV 178
               K  +F  + + +  MK +   V+ +    +I  +Y    KY   V  F       V
Sbjct: 75  STKYKARQFRIVCDMLDYMKRNNKNVVPVEVLLTILRNY--TEKYLTRVQKFAKKKRIRV 132

Query: 179 EQ--DVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA 236
           +   ++ A N LL A+C+       A     RVK  V PD +++ ++  GW +  N    
Sbjct: 133 KTQPEINAFNLLLDALCKC-CLAEDAEGLFKRVKNKVKPDANTYNVMFFGWCRVRNPTRG 191

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA---LKFLRVMKGENCFPTLKFFS 293
            K   EM++     P+    Y T +    R   V+EA    +F+R        PT K ++
Sbjct: 192 MKVLEEMIQ-LGHTPDS-FTYITAIDAFCRAGMVNEAAELFEFMRTKGSTMSSPTAKTYA 249

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +  LV+ N      +L + M+  G   +P++  +  +I  +C+   +D  +RF  +M 
Sbjct: 250 IMIGALVRNNRMDECFKLLEDMINSG--CLPDVSTFKELIEGMCSAGKIDEAYRFLQEMG 307

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G  PD +TYN   + L +NK   E  + +  MI+    P+       I+M  +  +P+
Sbjct: 308 NKGYPPDIVTYNCFLKVLCENKNSEEALRLYERMIEAGCFPSVQTHNMLISMFFEMGDPD 367

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
            A E W  + + G      +   ++ GL    ++ D     E+++N+
Sbjct: 368 GAFETWYEMDKRGCAQDVDTYIVMIDGLFGCNKVEDACFLIEDIVNK 414


>gi|326523953|dbj|BAJ96987.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1092

 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 104/401 (25%), Positives = 181/401 (45%), Gaps = 20/401 (4%)

Query: 67  DIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAG----RGQRLSPYAWNLMVDV 122
           D+  A+A  G++PT    + VL L++     A       G    RG R + Y++ + + V
Sbjct: 192 DVYKAMAADGVVPTVR-TYSVLMLAFGKRRDAETVVGLLGEMEARGVRPNVYSYTICIRV 250

Query: 123 LGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD 181
           LG+ GR E+ +  +R M+E+G    + T   +    C AG+  +A   F  M     + D
Sbjct: 251 LGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAGRLADAKDVFWKMKASDQKPD 310

Query: 182 VVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD---SFAILLEGWEKEGNVEEANK 238
            V   +LL   C     +    E  N +K   D   D   S+   ++   + G V+EA  
Sbjct: 311 RVTYITLLDK-CGDSGDSRSVSEIWNALK--ADGYNDNVVSYTAAVDALCQVGRVDEALD 367

Query: 239 TFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDI 298
            F EM ++     ++  +Y + +   ++  + + AL+    M      PT   +++ L I
Sbjct: 368 VFDEMKQKGIIPQQY--SYNSLISGFLKADRFNRALELFNHMNIHG--PTPNGYTHVLFI 423

Query: 299 LV--KLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG 356
               K  +S  A++ +++M   G  ++P+++  NAV+  L     +    R F ++   G
Sbjct: 424 NYHGKSGESLKALKRYELMKSKG--IVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMG 481

Query: 357 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 416
             PD++TY M+ +C  K     E  K F EMI+N   P  L   + I ML  A     A 
Sbjct: 482 ISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLYKAGRGNEAW 541

Query: 417 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           +I+  + E  + P + + N LL GL   G++ +V +  E M
Sbjct: 542 KIFYELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGM 582



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 87/417 (20%), Positives = 184/417 (44%), Gaps = 31/417 (7%)

Query: 96  SSAVDFFRWAGRGQR------------LSPY--AWNLMVDVLGKNGRFEQMWNAVRVMKE 141
           +S +D    AGRG              L P    +N ++  LG+ G+ +++   +  M  
Sbjct: 525 NSLIDMLYKAGRGNEAWKIFYELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNS 584

Query: 142 DGVLSLP----TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           +   S P    T+ ++ D  C  G+ + A+     M+M+G   D+ + N+++  + + E 
Sbjct: 585 N---SFPPNIITYNTVLDCLCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYGLVK-EG 640

Query: 198 QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
           +   A     ++KK++ PD  +   +L  + + G ++EA  T  E + + +   +   + 
Sbjct: 641 RLDEAFWMFCQMKKVLAPDYATVCTILPSFVRSGLMKEALHTVREYILQPDSKVDRS-SV 699

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317
            + +  +++    +++++F   +          F S  +    K  ++  A +L      
Sbjct: 700 HSLMEGILKRDGTEKSIEFAENIASSGLLLDDLFLSPIIRHFCKHKEALAAHELVKKFEN 759

Query: 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
           +G +L      YNA+I  L + D +D     F +M   G  PD  TY++I + + K+ R+
Sbjct: 760 LGVSLKTG--SYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMGKSMRI 817

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 437
            ++ K   EM    ++ T +   T I+ L+ +   + AI ++  ++  G  P   +   L
Sbjct: 818 EDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPL 877

Query: 438 LVGLRNLGRLSDVRRFAEEML----NRRILIYEVTMHKLKKAFYNESRSMRDIFDSL 490
           L GL   G + D     +EML         IY + ++  + A   ++  + ++F+S+
Sbjct: 878 LDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIA--GDTEKVCELFESM 932



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 159/348 (45%), Gaps = 12/348 (3%)

Query: 117  NLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176
            +LM  +L ++G  + +  A  +     +L     + I   +C   K+ EA+ + +++   
Sbjct: 701  SLMEGILKRDGTEKSIEFAENIASSGLLLDDLFLSPIIRHFC---KHKEALAAHELVKKF 757

Query: 177  ---GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGN 232
               GV     + N+L+  +   E+    A E  + +K++  DPD  ++ ++L+   K   
Sbjct: 758  ENLGVSLKTGSYNALICGLV-DEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMGKSMR 816

Query: 233  VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
            +E+  K   EM  +  +   +V  Y T +  L++ K +DEA+     +  E   PT   +
Sbjct: 817  IEDMLKIQEEMHNK-GYKSTYV-TYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTY 874

Query: 293  SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
               LD L+K  +   A  L+D M+  G    PN  +YN ++       D + V   F+ M
Sbjct: 875  GPLLDGLLKDGNIEDAEALFDEMLECGCE--PNCAIYNILLNGYRIAGDTEKVCELFESM 932

Query: 353  VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
            V  G  PD  +Y ++ + L  + R+++   +F ++     +P  +     I  L  +   
Sbjct: 933  VEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRL 992

Query: 413  EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
            E A+ ++N + + GI P   + N L++ L   G+ ++  +  EE+L +
Sbjct: 993  EEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAK 1040



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 158/355 (44%), Gaps = 13/355 (3%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNG---RFEQMWNAVRVMKEDGVL-SLPTFASIFDS 156
           F++     Q+     +  ++D  G +G      ++WNA   +K DG   ++ ++ +  D+
Sbjct: 299 FWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNA---LKADGYNDNVVSYTAAVDA 355

Query: 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDP 215
            C  G+ DEA+  FD M   G+     + NSL+S   + + + +RALE  N +      P
Sbjct: 356 LCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKAD-RFNRALELFNHMNIHGPTP 414

Query: 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK 275
           +G +  + +    K G   +A K + E+++     P+ V+A    L  L +  ++  A +
Sbjct: 415 NGYTHVLFINYHGKSGESLKALKRY-ELMKSKGIVPD-VVAGNAVLYGLAKTGRLGMAKR 472

Query: 276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGL 335
               +K     P    ++  +    K +++  A++++  M  I     P+++  N++I +
Sbjct: 473 VFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEM--IENRCAPDVLAMNSLIDM 530

Query: 336 LCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 395
           L      +  ++ F ++      P   TYN +   L +  +V EV +    M  N + P 
Sbjct: 531 LYKAGRGNEAWKIFYELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPN 590

Query: 396 PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 450
            +   T +  L    E   A+++   +  NG +P  +S N ++ GL   GRL + 
Sbjct: 591 IITYNTVLDCLCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYGLVKEGRLDEA 645



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/286 (22%), Positives = 119/286 (41%), Gaps = 14/286 (4%)

Query: 149  TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
            T+  I D+   + + ++ +   + M   G +   V  N+++S + + +        +   
Sbjct: 803  TYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQL 862

Query: 209  VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR-G 267
            + +   P   ++  LL+G  K+GN+E+A   F EM+E      E   A    L+   R  
Sbjct: 863  MSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLE---CGCEPNCAIYNILLNGYRIA 919

Query: 268  KQVDEALKFLRVMKGENCFPTLKFFSNALDILV---KLNDS-THAVQLWDIMVGIGFNLM 323
               ++  +    M  +   P +K ++  +D L    +LND  ++  QL D+       L 
Sbjct: 920  GDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDM------GLE 973

Query: 324  PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
            P+LI YN +I  L  +  ++     ++ M   G  P+  TYN +   L K  +  E  K 
Sbjct: 974  PDLITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKM 1033

Query: 384  FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
            + E++   W+P        I     +  PE A   +  ++  G  P
Sbjct: 1034 YEELLAKGWKPNVFTYNALIRGYSVSGSPENAFAAYGRMIVGGCRP 1079



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/230 (20%), Positives = 94/230 (40%), Gaps = 2/230 (0%)

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
           Y   +  L++     EA+   + M  +   PT++ +S  +    K  D+   V L   M 
Sbjct: 174 YNGLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGLLGEME 233

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
             G  + PN+  Y   I +L     ++  +R   +M   G  PD +T  ++ + L    R
Sbjct: 234 ARG--VRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAGR 291

Query: 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 436
           + + +  F +M  ++ +P  +   T +    D+ +     EIWN +  +G      S   
Sbjct: 292 LADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYTA 351

Query: 437 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDI 486
            +  L  +GR+ +     +EM  + I+  + + + L   F    R  R +
Sbjct: 352 AVDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRAL 401


>gi|302771513|ref|XP_002969175.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
 gi|300163680|gb|EFJ30291.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
          Length = 399

 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 169/374 (45%), Gaps = 33/374 (8%)

Query: 97  SAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS--LPTFAS 152
           +A+D  R   +  G   +P  +N  V  L K+G+  +    V+ MK DG     + TF +
Sbjct: 36  AAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMK-DGACKPDVVTFNT 94

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI 212
           +    C AG+ DEA    D M   G   ++V  N+L++ +     ++  A+  +  +   
Sbjct: 95  LIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGL-SSAGRSGEAVLVMQGM--T 151

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
             PD  ++  ++ G+ K G ++ A     EM +R   +P+    Y   +  L +   + +
Sbjct: 152 TTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPD-TFTYSILINGLCKSSNLRK 210

Query: 273 ALKFLRVMKG-ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA 331
           A + L+ M G ++C  ++  F+  +D   K  D   A +L   M+  G    P+++ Y+ 
Sbjct: 211 ADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHG--CAPDVVTYST 268

Query: 332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
           +I  LC   DVD  F   ++MV  G  PD +TY ++   L K  ++ E  +    M+++ 
Sbjct: 269 IIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDG 328

Query: 392 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 451
             P  +  +     L   D+ ++                   AN+LL  +R+ GR++DV 
Sbjct: 329 CTPNAVTYSLVFDGLCKIDKLDM-------------------ANDLLTSIRDKGRVTDVV 369

Query: 452 RFAEEMLN--RRIL 463
            F   +L+  +R+L
Sbjct: 370 AFETLLLSVKKRLL 383



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 115/253 (45%), Gaps = 13/253 (5%)

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           K G V EA +    M +     P+ V+ + T +  L +  ++DEA + L  M+       
Sbjct: 66  KSGKVPEAMEVVKNMKDG-ACKPD-VVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAAN 123

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
           L  ++  ++ L     S  AV     +V  G    P+   YNA+I   C + ++D  + F
Sbjct: 124 LVTYNTLINGLSSAGRSGEAV-----LVMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGF 178

Query: 349 FDQMVFH-GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI-KNEWQPTPLNCATAITML 406
            ++M    G  PD+ TY+++   L K+  + + ++   EMI + +   + +   T +   
Sbjct: 179 LEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGY 238

Query: 407 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR----I 462
             A + + A E+ + +LE+G  P   + + ++ GL   G +       E+M++R     +
Sbjct: 239 CKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDV 298

Query: 463 LIYEVTMHKLKKA 475
           + Y V +  L KA
Sbjct: 299 VTYTVLVTGLCKA 311


>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
          Length = 740

 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 157/355 (44%), Gaps = 5/355 (1%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           +G G   S Y+ N ++  L K    E   N  + M   G+  SL TF ++ +     GK 
Sbjct: 155 SGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKV 214

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
            EA +    +  + +  DV    SL+   CR  N       F   VK+  DP+  +++ L
Sbjct: 215 REAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTL 274

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           + G   EG V+EA     EM+E+    P  V  Y   +  L   +  +EA++ +  MK  
Sbjct: 275 INGLCNEGRVDEALDMLEEMIEK-GIEPT-VYTYTLPITALCAIEHEEEAIELVARMKKR 332

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
            C P ++ ++  +  L +L     A+ L+  M+  G  L+PN + YNA+I  LC      
Sbjct: 333 GCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEG--LVPNTVTYNALINELCVGGRFS 390

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
              + F  M  HG+  ++ TYN I + L     + +    F +M+K    PT +   T I
Sbjct: 391 TALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLI 450

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
              L       A  + + + ENG  P E + NEL+ G    G+L     + +EM+
Sbjct: 451 NGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMV 505



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/359 (22%), Positives = 156/359 (43%), Gaps = 6/359 (1%)

Query: 137 RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
           R++KE    +  T++++ +  C  G+ DEA+   + M   G+E  V      ++A+C  E
Sbjct: 258 RMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIE 317

Query: 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
           ++           K+   P+  ++  L+ G  + G +E A   + +M++  E    + + 
Sbjct: 318 HEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLK--EGLVPNTVT 375

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
           Y   +  L  G +   ALK    M+G       + ++  +  L    D   A+ L++ M+
Sbjct: 376 YNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKML 435

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
            +G   +P ++ YN +I       +V+N  R  D M  +G  PD  TYN +     K  +
Sbjct: 436 KMG--PLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGK 493

Query: 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 436
           +     +F EM++    P P++    I       + +IA+ +   + E G  P   S N 
Sbjct: 494 LESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNA 553

Query: 437 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSM--RDIFDSLERR 493
           ++ GL    R S+  +  ++M+ + +L   +T   L        R+     IF  +E+R
Sbjct: 554 VINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKR 612



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 150/369 (40%), Gaps = 52/369 (14%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N +++ L   GRF         M+  G L+   T+  I    C  G  ++A++ F+ M
Sbjct: 375 TYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKM 434

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGN 232
              G    VV  N+L++    + N  + A   L+ +K+   +PD  ++  L+ G+ K G 
Sbjct: 435 LKMGPLPTVVTYNTLINGYLTKGN-VNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGK 493

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +E A+  F EMVE    NP  V +Y   +    +  +VD AL  L+ M+   C       
Sbjct: 494 LESASFYFQEMVE-CGLNPNPV-SYTALIDGHSKDGKVDIALSLLKRMEEMGC------- 544

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
                                          PN+  YNAVI  L   +      +  D+M
Sbjct: 545 ------------------------------NPNVESYNAVINGLSKENRFSEAEKICDKM 574

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD---A 409
           V  G  P+ +TY  + + L +N R     K FH+M K +  P     ++ I  L     A
Sbjct: 575 VEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKA 634

Query: 410 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD----VRRFAEEMLNRRILIY 465
           DE EI ++    +   G+ P E +   L+ G   LGR+      +RR  +         Y
Sbjct: 635 DEAEILLK---EMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDMGCKPNYRTY 691

Query: 466 EVTMHKLKK 474
            V +  L+K
Sbjct: 692 SVLLKGLQK 700



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 80/376 (21%), Positives = 142/376 (37%), Gaps = 42/376 (11%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAG 161
           R   RG R +   +  ++  L + G+ E       +++KE  V +  T+ ++ +  C  G
Sbjct: 328 RMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGG 387

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221
           ++  A+  F  M  HG   +    N ++  +C                            
Sbjct: 388 RFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLG-------------------------- 421

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNP-EHVLAYETFLITLIRGKQVDEALKFLRVM 280
                    G++E+A   F +M++     P   V+ Y T +   +    V+ A + L +M
Sbjct: 422 ---------GDIEKAMVLFEKMLK---MGPLPTVVTYNTLINGYLTKGNVNNAARLLDLM 469

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
           K   C P    ++  +    K      A   +  MV  G N  PN + Y A+I     + 
Sbjct: 470 KENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLN--PNPVSYTALIDGHSKDG 527

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
            VD       +M   G  P+  +YN +   L K  R  E EK   +M++    P  +   
Sbjct: 528 KVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYT 587

Query: 401 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           T I  L      + A +I++ + +   LP   + + L+ GL   G+  +     +EM  +
Sbjct: 588 TLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERK 647

Query: 461 RILIYEVTMHKLKKAF 476
            +   EVT   L   F
Sbjct: 648 GLAPDEVTFTSLIDGF 663



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 96/214 (44%), Gaps = 2/214 (0%)

Query: 259 TFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI 318
           T LI L + + V+ A    + M      P+L  F+  ++IL K      A  +   +   
Sbjct: 168 TLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQI--F 225

Query: 319 GFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVH 378
            ++L P++  Y ++I   C N ++D  F  FD+MV  G  P+S+TY+ +   L    RV 
Sbjct: 226 QYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVD 285

Query: 379 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 438
           E      EMI+   +PT       IT L   +  E AIE+   + + G  P   +   L+
Sbjct: 286 EALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALI 345

Query: 439 VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
            GL  LG+L        +ML   ++   VT + L
Sbjct: 346 SGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNAL 379


>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
          Length = 962

 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 157/355 (44%), Gaps = 5/355 (1%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           +G G   S Y+ N ++  L K    E   N  + M   G+  SL TF ++ +     GK 
Sbjct: 197 SGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKV 256

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
            EA +    +  + +  DV    SL+   CR  N       F   VK+  DP+  +++ L
Sbjct: 257 REAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTL 316

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           + G   EG V+EA     EM+E+    P  V  Y   +  L   +  +EA++ +  MK  
Sbjct: 317 INGLCNEGRVDEALDMLEEMIEK-GIEPT-VYTYTLPITALCAIEHEEEAIELVARMKKR 374

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
            C P ++ ++  +  L +L     A+ L+  M+  G  L+PN + YNA+I  LC      
Sbjct: 375 GCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEG--LVPNTVTYNALINELCVGGRFS 432

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
              + F  M  HG+  ++ TYN I + L     + +    F +M+K    PT +   T I
Sbjct: 433 TALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLI 492

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
              L       A  + + + ENG  P E + NEL+ G    G+L     + +EM+
Sbjct: 493 NGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMV 547



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 82/359 (22%), Positives = 156/359 (43%), Gaps = 6/359 (1%)

Query: 137 RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
           R++KE    +  T++++ +  C  G+ DEA+   + M   G+E  V      ++A+C  E
Sbjct: 300 RMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIE 359

Query: 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
           ++           K+   P+  ++  L+ G  + G +E A   + +M++  E    + + 
Sbjct: 360 HEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLK--EGLVPNTVT 417

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
           Y   +  L  G +   ALK    M+G       + ++  +  L    D   A+ L++ M+
Sbjct: 418 YNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKML 477

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
            +G   +P ++ YN +I       +V+N  R  D M  +G  PD  TYN +     K  +
Sbjct: 478 KMG--PLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGK 535

Query: 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 436
           +     +F EM++    P P++  T I       + +IA+ +   + E G  P   S N 
Sbjct: 536 LESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNA 595

Query: 437 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSM--RDIFDSLERR 493
           ++ GL    R S+  +  ++M  + +L   +T   L        R+     IF  +E+R
Sbjct: 596 VINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKR 654



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 149/369 (40%), Gaps = 52/369 (14%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N +++ L   GRF         M+  G L+   T+  I    C  G  ++A++ F+ M
Sbjct: 417 TYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKM 476

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGN 232
              G    VV  N+L++    + N  + A   L+ +K+   +PD  ++  L+ G+ K G 
Sbjct: 477 LKMGPLPTVVTYNTLINGYLTKGN-VNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGK 535

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +E A+  F EMVE    NP  V +Y T +    +  +VD AL  L  M+   C       
Sbjct: 536 LESASFYFQEMVE-CGLNPNPV-SYTTLIDGHSKDGKVDIALSLLERMEEMGC------- 586

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
                                          PN+  YNAVI  L   +      +  D+M
Sbjct: 587 ------------------------------NPNVESYNAVINGLSKENRFSEAEKICDKM 616

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD---A 409
              G  P+ +TY  + + L +N R     K FH+M K +  P     ++ I  L     A
Sbjct: 617 AEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKA 676

Query: 410 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD----VRRFAEEMLNRRILIY 465
           DE EI ++    +   G+ P E +   L+ G   LGR+      +RR  +         Y
Sbjct: 677 DEAEILLK---EMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTY 733

Query: 466 EVTMHKLKK 474
            V +  L+K
Sbjct: 734 SVLLKGLQK 742



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 78/376 (20%), Positives = 141/376 (37%), Gaps = 42/376 (11%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAG 161
           R   RG R +   +  ++  L + G+ E        M ++G++ +  T+ ++ +  C  G
Sbjct: 370 RMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGG 429

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221
           ++  A+  F  M  HG   +    N ++  +C                            
Sbjct: 430 RFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLG-------------------------- 463

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNP-EHVLAYETFLITLIRGKQVDEALKFLRVM 280
                    G++E+A   F +M++     P   V+ Y T +   +    V+ A + L +M
Sbjct: 464 ---------GDIEKAMVLFEKMLK---MGPLPTVVTYNTLINGYLTKGNVNNAARLLDLM 511

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
           K   C P    ++  +    K      A   +  MV  G N  PN + Y  +I     + 
Sbjct: 512 KENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLN--PNPVSYTTLIDGHSKDG 569

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
            VD      ++M   G  P+  +YN +   L K  R  E EK   +M +    P  +   
Sbjct: 570 KVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYT 629

Query: 401 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           T I  L      + A +I++ + +   LP   + + L+ GL   G+  +     +EM  +
Sbjct: 630 TLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERK 689

Query: 461 RILIYEVTMHKLKKAF 476
            +   EVT   L   F
Sbjct: 690 GLAPDEVTFTSLIDGF 705



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 96/214 (44%), Gaps = 2/214 (0%)

Query: 259 TFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI 318
           T LI L + + V+ A    + M      P+L  F+  ++IL K      A  +   +   
Sbjct: 210 TLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQI--F 267

Query: 319 GFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVH 378
            ++L P++  Y ++I   C N ++D  F  FD+MV  G  P+S+TY+ +   L    RV 
Sbjct: 268 QYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVD 327

Query: 379 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 438
           E      EMI+   +PT       IT L   +  E AIE+   + + G  P   +   L+
Sbjct: 328 EALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALI 387

Query: 439 VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
            GL  LG+L        +ML   ++   VT + L
Sbjct: 388 SGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNAL 421



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 75/330 (22%), Positives = 135/330 (40%), Gaps = 20/330 (6%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAG 161
           + A +G   +   +  ++D L +NGR +  +     M++   L +L T++S+    C  G
Sbjct: 615 KMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEG 674

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSF 220
           K DEA +    M   G+  D V   SL+        +   A   L R+  +   P+  ++
Sbjct: 675 KADEAEILLKEMERKGLAPDEVTFTSLIDGFVVL-GRIDHAFLLLRRMVDVGCKPNYRTY 733

Query: 221 AILLEGWEKEGNV-EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           ++LL+G +KE  + EE      E V  F  + + V  +E     L R  ++         
Sbjct: 734 SVLLKGLQKECLLLEEKVAVQHEAVYSFSPHEKDV-NFEIVSNLLARMSEI--------- 783

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
                C PTL  +S  +  L +      A QL   M   GF   P+  +Y +++   C N
Sbjct: 784 ----GCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGF--CPDREIYYSLLIAHCKN 837

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
            +VD+  + F  +   G       Y  +   L K  +V E +  F  M++ EW    +  
Sbjct: 838 LEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVW 897

Query: 400 ATAITMLLDADEPEIAIEIWNYILENGILP 429
              +  LL   E ++ +++ + +      P
Sbjct: 898 TVLVDGLLKEGELDLCMKLLHIMESKNFTP 927


>gi|225441858|ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Vitis vinifera]
          Length = 798

 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 120/509 (23%), Positives = 205/509 (40%), Gaps = 62/509 (12%)

Query: 35  PTRPRFPT-HLDAPYISSSARIICEILA-HASSDDIESALACTGIIPTPDLVHEVLQLSY 92
           P + RF   H +    +  A I  E+L    + + +E AL       + ++V++V++   
Sbjct: 16  PKQSRFRCLHANLFTTAQGAAISNEVLTVMETVNPMEDALEKLAPFLSSEIVNDVMR-EQ 74

Query: 93  DSPSSAVDFFRWAGRGQRLSPYAW---NLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLP 148
             P     FF W  R  R S  +W   NL++D+L K+  F+  W  +  +K   + +  P
Sbjct: 75  RRPELGFRFFIWTTR--RRSFRSWVTHNLVIDMLAKDDGFDTYWKILEELKNSNIQIPPP 132

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF+ +  +Y  +G  ++AV SF  M   G + DV   NS+L  + ++E     AL   N+
Sbjct: 133 TFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQKE-VFLLALAVYNQ 191

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           + K+  +P+  +F ILL G  K G  ++A K F EM ++    P + + Y   L  L + 
Sbjct: 192 MLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQK--GIPPNTMIYTIILSGLCQA 249

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF------- 320
           K+ D+  + L  MK   C P     +  LD   KL     A  L  +    G+       
Sbjct: 250 KRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGY 309

Query: 321 --------------------------NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
                                      + P++++Y  +I   C    VD      + M  
Sbjct: 310 SSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQ 369

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 414
            G  PD+  YN + +       + +      E+ KN+  PT       I  +      + 
Sbjct: 370 RGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDE 429

Query: 415 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKK 474
           A +I+N +   G  P   + N L+ GL   G L + R           L Y++ + K   
Sbjct: 430 ARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARH----------LFYKMEIGKNPS 479

Query: 475 AFYNESRSMRDIFDS------LERRCKTS 497
            F   S+    + D+      +ER C++ 
Sbjct: 480 LFLRLSQGADRVMDTASLQTMVERLCESG 508



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 150/348 (43%), Gaps = 22/348 (6%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
           N ++D   K G+ ++ +  +++ +++G VL +  ++S+ D    A +YDE       M  
Sbjct: 275 NALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFK 334

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVE 234
            G+E DVV    L+   C +      AL  LN + ++ + PD   +  L++G+   G ++
Sbjct: 335 AGIEPDVVLYTILIRGFC-EVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLD 393

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           +A ++    + + +  P     Y   +  + R   +DEA +    M+   C P++  F+ 
Sbjct: 394 KA-RSLQLEISKNDCFPTSC-TYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNA 451

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM--------------YNAVIGLLCNND 340
            +D L K  +   A  L+  M  IG N  P+L +                 ++  LC + 
Sbjct: 452 LIDGLCKAGELEEARHLFYKM-EIGKN--PSLFLRLSQGADRVMDTASLQTMVERLCESG 508

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
            +   ++   Q+   G  PD +TYN++     K K ++   K F E+      P  +   
Sbjct: 509 LILKAYKLLMQLADSGVVPDIMTYNVLINGFCKAKNINGAFKLFRELQLKGHSPDSVTYG 568

Query: 401 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
           T I      D  E A  + + +++NG  P  A    L+      G+LS
Sbjct: 569 TLIDGFHRVDREEDAFRVLDQMVKNGCTPSSAVYKCLMTWSCRKGKLS 616



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/325 (20%), Positives = 146/325 (44%), Gaps = 16/325 (4%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G  L    ++ ++D L +  R++++    R M + G+   +  +  +   +C  G  D A
Sbjct: 301 GYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYA 360

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQEN-QTSRALEFLNRVKKIVDPDGDSFAILLE 225
           +   + M+  G+  D    N+L+   C       +R+L+ L   K    P   ++ IL+ 
Sbjct: 361 LNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQ-LEISKNDCFPTSCTYTILIC 419

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK-FLRVMKGEN 284
           G  + G ++EA + F +M E    +P  ++ +   +  L +  +++EA   F ++  G+N
Sbjct: 420 GMCRNGLLDEARQIFNQM-ENLGCSPS-IMTFNALIDGLCKAGELEEARHLFYKMEIGKN 477

Query: 285 CFPTLKFFSNA--------LDILV-KLNDSTHAVQLWDIMVGIG-FNLMPNLIMYNAVIG 334
               L+    A        L  +V +L +S   ++ + +++ +    ++P+++ YN +I 
Sbjct: 478 PSLFLRLSQGADRVMDTASLQTMVERLCESGLILKAYKLLMQLADSGVVPDIMTYNVLIN 537

Query: 335 LLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
             C   +++  F+ F ++   G  PDS+TY  + +   +  R  +  +   +M+KN   P
Sbjct: 538 GFCKAKNINGAFKLFRELQLKGHSPDSVTYGTLIDGFHRVDREEDAFRVLDQMVKNGCTP 597

Query: 395 TPLNCATAITMLLDADEPEIAIEIW 419
           +       +T      +  +A  +W
Sbjct: 598 SSAVYKCLMTWSCRKGKLSVAFSLW 622



 Score = 45.4 bits (106), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 52/238 (21%), Positives = 101/238 (42%), Gaps = 15/238 (6%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ ++ D +    + ++A    D M  +G          L++  CR+   +     +L  
Sbjct: 566 TYGTLIDGFHRVDREEDAFRVLDQMVKNGCTPSSAVYKCLMTWSCRKGKLSVAFSLWLKY 625

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           ++ +   + ++  +  E +EK G +E+A +   EM   F+ N   +  Y  +LI L + +
Sbjct: 626 LRSLPSQEDETLKLAEEHFEK-GELEKAVRCLLEM--NFKLNNFEIAPYTIWLIGLCQAR 682

Query: 269 QVDEALKFLRVMKGENCF-----PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLM 323
           + +EALK   V+K   C      P+     N    L K  +   AV ++   +  GF LM
Sbjct: 683 RSEEALKIFLVLK--ECQMDVNPPSCVMLING---LCKDGNLEMAVDIFLYTLEKGFMLM 737

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 381
           P +   N ++  L   D + +     ++M   G   D   ++ I   L+   +  E+E
Sbjct: 738 PRIC--NQLLRSLILQDKMKHALDLLNRMNSAGYDLDEYLHHRIKSYLLSVWKAQEME 793


>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
           EFFECT EMBRYO ARREST 40; Flags: Precursor
 gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
 gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
 gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 754

 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 155/350 (44%), Gaps = 9/350 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N +V+ L K G  +     + VM ++G    + T+ S+    C  G+  EAV   D 
Sbjct: 296 YTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQ 355

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV--KKIVDPDGDSFAILLEGWEKE 230
           M       + V  N+L+S +C+ ENQ   A E L RV   K + PD  +F  L++G    
Sbjct: 356 MITRDCSPNTVTYNTLISTLCK-ENQVEEATE-LARVLTSKGILPDVCTFNSLIQGLCLT 413

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
            N   A + F EM  R +        Y   + +L    ++DEAL  L+ M+   C  ++ 
Sbjct: 414 RNHRVAMELFEEM--RSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVI 471

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
            ++  +D   K N +  A +++D M   G +   N + YN +I  LC +  V++  +  D
Sbjct: 472 TYNTLIDGFCKANKTREAEEIFDEMEVHGVS--RNSVTYNTLIDGLCKSRRVEDAAQLMD 529

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
           QM+  G  PD  TYN +     +   + +       M  N  +P  +   T I+ L  A 
Sbjct: 530 QMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAG 589

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
             E+A ++   I   GI     + N ++ GL    + ++      EML +
Sbjct: 590 RVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQ 639



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 82/386 (21%), Positives = 145/386 (37%), Gaps = 79/386 (20%)

Query: 96  SSAVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFAS 152
           S+A+  F  A +    SP    +  ++  LG++G F+ M   +  MK     +   TF  
Sbjct: 64  SAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFLI 123

Query: 153 IFDSYCGAGKYDEAV------------------------------------MSFDVMSMH 176
           + +SY      DE +                                    +S   MS+ 
Sbjct: 124 LIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVW 183

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA 236
           G++ DV   N L+ A+CR        L   +     + PD  +F  +++G+ +EG+++ A
Sbjct: 184 GIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGA 243

Query: 237 NKTFGEMVE-RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
            +   +MVE    W+    ++    +    +  +V++AL F++ M  ++ F         
Sbjct: 244 LRIREQMVEFGCSWSN---VSVNVIVHGFCKEGRVEDALNFIQEMSNQDGF--------- 291

Query: 296 LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
                                       P+   +N ++  LC    V +     D M+  
Sbjct: 292 ---------------------------FPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQE 324

Query: 356 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 415
           G  PD  TYN +   L K   V E  +   +MI  +  P  +   T I+ L   ++ E A
Sbjct: 325 GYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEA 384

Query: 416 IEIWNYILENGILPLEASANELLVGL 441
            E+   +   GILP   + N L+ GL
Sbjct: 385 TELARVLTSKGILPDVCTFNSLIQGL 410



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 97/238 (40%), Gaps = 2/238 (0%)

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           LL+    + +   A + F    ++  ++PE  L YE  L+ L R    D+  K L  MK 
Sbjct: 53  LLDSLRSQPDDSAALRLFNLASKKPNFSPEPAL-YEEILLRLGRSGSFDDMKKILEDMKS 111

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
             C      F   ++   +       + + D M+   F L P+   YN ++ LL + + +
Sbjct: 112 SRCEMGTSTFLILIESYAQFELQDEILSVVDWMID-EFGLKPDTHFYNRMLNLLVDGNSL 170

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
             V     +M   G  PD  T+N++ + L +  ++        +M      P      T 
Sbjct: 171 KLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTV 230

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           +   ++  + + A+ I   ++E G      S N ++ G    GR+ D   F +EM N+
Sbjct: 231 MQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQ 288


>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22470, mitochondrial; Flags: Precursor
 gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
 gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 619

 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 157/334 (47%), Gaps = 10/334 (2%)

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206
           L T +++ +  C  G+  EA++  D M  +G + D V    +L+ +C+  N ++ AL+  
Sbjct: 175 LVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGN-SALALDLF 233

Query: 207 NRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
            +++ + +      ++I+++   K+G+ ++A   F EM    +     V+ Y + +  L 
Sbjct: 234 RKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEM--EMKGIKADVVTYSSLIGGLC 291

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN 325
              + D+  K LR M G N  P +  FS  +D+ VK      A +L++ M+  G  + P+
Sbjct: 292 NDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRG--IAPD 349

Query: 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 385
            I YN++I   C  + +    + FD MV  G  PD +TY+++     K KRV +  + F 
Sbjct: 350 TITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFR 409

Query: 386 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
           E+      P  +   T +     + +   A E++  ++  G+ P   +   LL GL + G
Sbjct: 410 EISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNG 469

Query: 446 RLSDVRRFAEEMLNRR----ILIYEVTMHKLKKA 475
            L+      E+M   R    I IY + +H +  A
Sbjct: 470 ELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNA 503



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 155/336 (46%), Gaps = 5/336 (1%)

Query: 123 LGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD 181
           L K+G      +  R M+E  +  S+  ++ + DS C  G +D+A+  F+ M M G++ D
Sbjct: 220 LCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKAD 279

Query: 182 VVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFG 241
           VV  +SL+  +C        A      + + + PD  +F+ L++ + KEG + EA + + 
Sbjct: 280 VVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYN 339

Query: 242 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
           EM+ R    P+ +  Y + +    +   + EA +   +M  + C P +  +S  ++   K
Sbjct: 340 EMITR-GIAPDTI-TYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCK 397

Query: 302 LNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS 361
                  ++L+  +   G  L+PN I YN ++   C +  ++     F +MV  G  P  
Sbjct: 398 AKRVDDGMRLFREISSKG--LIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSV 455

Query: 362 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 421
           +TY ++ + L  N  +++  + F +M K+            I  + +A + + A  ++  
Sbjct: 456 VTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCS 515

Query: 422 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           + + G+ P   + N ++ GL   G LS+      +M
Sbjct: 516 LSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKM 551



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 72/315 (22%), Positives = 146/315 (46%), Gaps = 6/315 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF+++ + +C  G+  EAV   D M       D+V V++L++ +C +  + S AL  ++R
Sbjct: 142 TFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLK-GRVSEALVLIDR 200

Query: 209 -VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            V+    PD  ++  +L    K GN   A   F +M ER       V+ Y   + +L + 
Sbjct: 201 MVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEER--NIKASVVQYSIVIDSLCKD 258

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
              D+AL     M+ +     +  +S+ +  L          ++   M  IG N++P+++
Sbjct: 259 GSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREM--IGRNIIPDVV 316

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            ++A+I +      +      +++M+  G  PD++TYN + +   K   +HE  + F  M
Sbjct: 317 TFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLM 376

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
           +    +P  +  +  I     A   +  + ++  I   G++P   + N L++G    G+L
Sbjct: 377 VSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKL 436

Query: 448 SDVRRFAEEMLNRRI 462
           +  +   +EM++R +
Sbjct: 437 NAAKELFQEMVSRGV 451



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/335 (21%), Positives = 147/335 (43%), Gaps = 43/335 (12%)

Query: 98  AVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFD 155
           A+D FR    R  + S   +++++D L K+G F+   +    M+  G+ + + T++S+  
Sbjct: 229 ALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIG 288

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVD 214
             C  GK+D+       M    +  DVV  ++L+    + E +   A E  N  + + + 
Sbjct: 289 GLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVK-EGKLLEAKELYNEMITRGIA 347

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           PD  ++  L++G+ KE  + EAN+ F  MV +    P+ ++ Y   + +  + K+VD+ +
Sbjct: 348 PDTITYNSLIDGFCKENCLHEANQMFDLMVSK-GCEPD-IVTYSILINSYCKAKRVDDGM 405

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
           +  R +  +   P    ++  +    +      A +L+  MV  G  + P+++ Y  ++ 
Sbjct: 406 RLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRG--VPPSVVTYGILLD 463

Query: 335 LLCNNDDVDNVFRFFDQM--------------VFHGAF---------------------P 359
            LC+N +++     F++M              + HG                       P
Sbjct: 464 GLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKP 523

Query: 360 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
           D +TYN++   L K   + E +  F +M ++   P
Sbjct: 524 DVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTP 558



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 121/269 (44%), Gaps = 17/269 (6%)

Query: 108 GQRLSP--YAWNLMVDVLGKNGRF---EQMWNAV--RVMKEDGVLSLPTFASIFDSYCGA 160
           G+ + P    ++ ++DV  K G+    ++++N +  R +  D +    T+ S+ D +C  
Sbjct: 308 GRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTI----TYNSLIDGFCKE 363

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSF 220
               EA   FD+M   G E D+V  + L+++ C+ +        F     K + P+  ++
Sbjct: 364 NCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITY 423

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
             L+ G+ + G +  A + F EMV R    P  V+ Y   L  L    ++++AL+    M
Sbjct: 424 NTLVLGFCQSGKLNAAKELFQEMVSR--GVPPSVVTYGILLDGLCDNGELNKALEIFEKM 481

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG-FNLMPNLIMYNAVIGLLCNN 339
           +       +  ++    I+  + +++     W +   +    + P+++ YN +IG LC  
Sbjct: 482 QKSRMTLGIGIYNI---IIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKK 538

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIF 368
             +      F +M   G  PD  TYN++ 
Sbjct: 539 GSLSEADMLFRKMKEDGCTPDDFTYNILI 567



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 2/176 (1%)

Query: 306 THAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYN 365
           + AV L D MV +     P+L+  + +I  LC    V       D+MV +G  PD +TY 
Sbjct: 157 SEAVALVDRMVEM--KQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYG 214

Query: 366 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 425
            +   L K+         F +M +   + + +  +  I  L      + A+ ++N +   
Sbjct: 215 PVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMK 274

Query: 426 GILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
           GI     + + L+ GL N G+  D  +   EM+ R I+   VT   L   F  E +
Sbjct: 275 GIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGK 330



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 71/158 (44%), Gaps = 6/158 (3%)

Query: 72  LACTGIIPTPDLVHEVLQLSY---DSPSSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNG 127
           ++  G+IP   + +  L L +      ++A + F+    RG   S   + +++D L  NG
Sbjct: 411 ISSKGLIPNT-ITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNG 469

Query: 128 RFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN 186
              +       M++  + L +  +  I    C A K D+A   F  +S  GV+ DVV  N
Sbjct: 470 ELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYN 529

Query: 187 SLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
            ++  +C++ + +   + F    +    PD  ++ IL+
Sbjct: 530 VMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILI 567


>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 157/334 (47%), Gaps = 10/334 (2%)

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206
           L T +++ +  C  G+  EA++  D M  +G + D V    +L+ +C+  N ++ AL+  
Sbjct: 204 LVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGN-SALALDLF 262

Query: 207 NRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
            +++ + +      ++I+++   K+G+ ++A   F EM    +     V+ Y + +  L 
Sbjct: 263 RKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEM--EMKGIKADVVTYSSLIGGLC 320

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN 325
              + D+  K LR M G N  P +  FS  +D+ VK      A +L++ M+  G  + P+
Sbjct: 321 NDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRG--IAPD 378

Query: 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 385
            I YN++I   C  + +    + FD MV  G  PD +TY+++     K KRV +  + F 
Sbjct: 379 TITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFR 438

Query: 386 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
           E+      P  +   T +     + +   A E++  ++  G+ P   +   LL GL + G
Sbjct: 439 EISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNG 498

Query: 446 RLSDVRRFAEEMLNRR----ILIYEVTMHKLKKA 475
            L+      E+M   R    I IY + +H +  A
Sbjct: 499 ELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNA 532



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 155/336 (46%), Gaps = 5/336 (1%)

Query: 123 LGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD 181
           L K+G      +  R M+E  +  S+  ++ + DS C  G +D+A+  F+ M M G++ D
Sbjct: 249 LCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKAD 308

Query: 182 VVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFG 241
           VV  +SL+  +C        A      + + + PD  +F+ L++ + KEG + EA + + 
Sbjct: 309 VVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYN 368

Query: 242 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
           EM+ R    P+ +  Y + +    +   + EA +   +M  + C P +  +S  ++   K
Sbjct: 369 EMITR-GIAPDTI-TYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCK 426

Query: 302 LNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS 361
                  ++L+  +   G  L+PN I YN ++   C +  ++     F +MV  G  P  
Sbjct: 427 AKRVDDGMRLFREISSKG--LIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSV 484

Query: 362 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 421
           +TY ++ + L  N  +++  + F +M K+            I  + +A + + A  ++  
Sbjct: 485 VTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCS 544

Query: 422 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           + + G+ P   + N ++ GL   G LS+      +M
Sbjct: 545 LSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKM 580



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 72/315 (22%), Positives = 146/315 (46%), Gaps = 6/315 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF+++ + +C  G+  EAV   D M       D+V V++L++ +C +  + S AL  ++R
Sbjct: 171 TFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLK-GRVSEALVLIDR 229

Query: 209 -VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            V+    PD  ++  +L    K GN   A   F +M ER       V+ Y   + +L + 
Sbjct: 230 MVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEER--NIKASVVQYSIVIDSLCKD 287

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
              D+AL     M+ +     +  +S+ +  L          ++   M  IG N++P+++
Sbjct: 288 GSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREM--IGRNIIPDVV 345

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            ++A+I +      +      +++M+  G  PD++TYN + +   K   +HE  + F  M
Sbjct: 346 TFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLM 405

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
           +    +P  +  +  I     A   +  + ++  I   G++P   + N L++G    G+L
Sbjct: 406 VSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKL 465

Query: 448 SDVRRFAEEMLNRRI 462
           +  +   +EM++R +
Sbjct: 466 NAAKELFQEMVSRGV 480



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/335 (21%), Positives = 147/335 (43%), Gaps = 43/335 (12%)

Query: 98  AVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFD 155
           A+D FR    R  + S   +++++D L K+G F+   +    M+  G+ + + T++S+  
Sbjct: 258 ALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIG 317

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVD 214
             C  GK+D+       M    +  DVV  ++L+    + E +   A E  N  + + + 
Sbjct: 318 GLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVK-EGKLLEAKELYNEMITRGIA 376

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           PD  ++  L++G+ KE  + EAN+ F  MV +    P+ ++ Y   + +  + K+VD+ +
Sbjct: 377 PDTITYNSLIDGFCKENCLHEANQMFDLMVSK-GCEPD-IVTYSILINSYCKAKRVDDGM 434

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
           +  R +  +   P    ++  +    +      A +L+  MV  G  + P+++ Y  ++ 
Sbjct: 435 RLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRG--VPPSVVTYGILLD 492

Query: 335 LLCNNDDVDNVFRFFDQM--------------VFHGAF---------------------P 359
            LC+N +++     F++M              + HG                       P
Sbjct: 493 GLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKP 552

Query: 360 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
           D +TYN++   L K   + E +  F +M ++   P
Sbjct: 553 DVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTP 587



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 121/269 (44%), Gaps = 17/269 (6%)

Query: 108 GQRLSP--YAWNLMVDVLGKNGRF---EQMWNAV--RVMKEDGVLSLPTFASIFDSYCGA 160
           G+ + P    ++ ++DV  K G+    ++++N +  R +  D +    T+ S+ D +C  
Sbjct: 337 GRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTI----TYNSLIDGFCKE 392

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSF 220
               EA   FD+M   G E D+V  + L+++ C+ +        F     K + P+  ++
Sbjct: 393 NCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITY 452

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
             L+ G+ + G +  A + F EMV R    P  V+ Y   L  L    ++++AL+    M
Sbjct: 453 NTLVLGFCQSGKLNAAKELFQEMVSR--GVPPSVVTYGILLDGLCDNGELNKALEIFEKM 510

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG-FNLMPNLIMYNAVIGLLCNN 339
           +       +  ++    I+  + +++     W +   +    + P+++ YN +IG LC  
Sbjct: 511 QKSRMTLGIGIYNI---IIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKK 567

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIF 368
             +      F +M   G  PD  TYN++ 
Sbjct: 568 GSLSEADMLFRKMKEDGCTPDDFTYNILI 596



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 2/176 (1%)

Query: 306 THAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYN 365
           + AV L D MV +     P+L+  + +I  LC    V       D+MV +G  PD +TY 
Sbjct: 186 SEAVALVDRMVEM--KQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYG 243

Query: 366 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 425
            +   L K+         F +M +   + + +  +  I  L      + A+ ++N +   
Sbjct: 244 PVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMK 303

Query: 426 GILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
           GI     + + L+ GL N G+  D  +   EM+ R I+   VT   L   F  E +
Sbjct: 304 GIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGK 359



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 71/158 (44%), Gaps = 6/158 (3%)

Query: 72  LACTGIIPTPDLVHEVLQLSY---DSPSSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNG 127
           ++  G+IP   + +  L L +      ++A + F+    RG   S   + +++D L  NG
Sbjct: 440 ISSKGLIPNT-ITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNG 498

Query: 128 RFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN 186
              +       M++  + L +  +  I    C A K D+A   F  +S  GV+ DVV  N
Sbjct: 499 ELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYN 558

Query: 187 SLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
            ++  +C++ + +   + F    +    PD  ++ IL+
Sbjct: 559 VMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILI 596


>gi|125540181|gb|EAY86576.1| hypothetical protein OsI_07956 [Oryza sativa Indica Group]
 gi|125582780|gb|EAZ23711.1| hypothetical protein OsJ_07414 [Oryza sativa Japonica Group]
 gi|215768726|dbj|BAH00955.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 500

 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/353 (27%), Positives = 156/353 (44%), Gaps = 17/353 (4%)

Query: 52  SARIICEILAHA---SSDDIESALA--CTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAG 106
           +AR+I   L+ A   S  D+   L   C+GI  T ++V  +L    D   SA+ FF+WA 
Sbjct: 48  AARLIKNSLSKARKWSVQDLIQCLGADCSGIRLTGNIVDTLLFKFGDDWKSALGFFQWAQ 107

Query: 107 RGQ--RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYD 164
                R + YA N MVD+LGK  + +QMW  +  M   G++++ T A       GA ++ 
Sbjct: 108 SRDDYRHTAYACNRMVDLLGKMRQIDQMWELLSDMHGRGLVTVETVAKSIRRLAGARRWK 167

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
           + V+ FD +   G+E++   +N LL  +C+ E +   A E    +   + PD  +F I +
Sbjct: 168 DVVLLFDKLEDMGLERNTETMNVLLDVLCK-ERKIEVAREVFAVLSPHIPPDAYTFNIFV 226

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            GW     ++EA  T  EM  R    P  V+ Y T L    + +      + L  M  + 
Sbjct: 227 HGWCSIRRIDEAMWTIEEMKRR--GFPPSVITYTTVLEAYCKQRNFRRVYEVLDSMGSQG 284

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND---D 341
           C P +  ++  +  L K      A+ +   M   G    P+ + YN++I LL  +    +
Sbjct: 285 CHPNVITYTMIMTSLAKCERFEEALSVSHRMKSSGCK--PDTLFYNSLINLLGKSGHLFE 342

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
              VFR   +M  +G   +  TYN +        R  +      EM     +P
Sbjct: 343 ASQVFRV--EMPMNGVSHNLATYNTMISIFCYYGRDDDALNVLKEMEAQSCKP 393



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 105/243 (43%), Gaps = 7/243 (2%)

Query: 130 EQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSL 188
           E MW  +  MK  G   S+ T+ ++ ++YC    +       D M   G   +V+    +
Sbjct: 237 EAMWT-IEEMKRRGFPPSVITYTTVLEAYCKQRNFRRVYEVLDSMGSQGCHPNVITYTMI 295

Query: 189 LSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF 247
           ++++ + E +   AL   +R+K     PD   +  L+    K G++ EA++ F   VE  
Sbjct: 296 MTSLAKCE-RFEEALSVSHRMKSSGCKPDTLFYNSLINLLGKSGHLFEASQVF--RVEMP 352

Query: 248 EWNPEHVLA-YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
                H LA Y T +       + D+AL  L+ M+ ++C P ++ +   L + +      
Sbjct: 353 MNGVSHNLATYNTMISIFCYYGRDDDALNVLKEMEAQSCKPDIQSYRPLLRLFLSRRGQA 412

Query: 307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM 366
             V+     +    NL  +L  Y  +I  LC   D    ++ FD+MV     P S T  M
Sbjct: 413 DTVRHLLSELTSKHNLGLDLDTYTLLIHGLCRVGDTVWAYQLFDEMVSSEIAPRSKTCVM 472

Query: 367 IFE 369
           + +
Sbjct: 473 LLD 475


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/395 (22%), Positives = 175/395 (44%), Gaps = 40/395 (10%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N+++      G  E        M+ +G L ++ T+ +I D+YC   K  EA     +
Sbjct: 204 YTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRL 263

Query: 173 MSMHGVEQDVVAVNSLLSAICR--QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
           M++ G+  ++++ N +++ +CR  Q  +TS  LE +++ + +  PD  +F  L+ G+   
Sbjct: 264 MALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYV--PDRVTFNTLINGYCNV 321

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           GN  +A     EMV+    +P +V+ Y T + ++ +   ++ A++FL  M+     P  +
Sbjct: 322 GNFHQALVLHAEMVKN-GLSP-NVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGR 379

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGF------------------------------ 320
            ++  +D   +      A Q+   MV  GF                              
Sbjct: 380 TYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEM 439

Query: 321 ---NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
                +P+++ Y+ +I   C N +++  F+   +MV  G  PD  TY+ + + L K +R+
Sbjct: 440 IERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRL 499

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 437
            EV   F EM+     P  +   + I       + + A+ + + +++ G  P   + N L
Sbjct: 500 GEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVL 559

Query: 438 LVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
           + G     R  + +R   ++L    +  E+T + L
Sbjct: 560 INGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTL 594



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 92/437 (21%), Positives = 199/437 (45%), Gaps = 57/437 (13%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++N++++ L + G+ ++    +  M K   V    TF ++ + YC  G + +A++    M
Sbjct: 275 SYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEM 334

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
             +G+  +VV   +L++++C+  N  +RA+EFL++++ + + P+G ++  L++G+ ++G 
Sbjct: 335 VKNGLSPNVVTYTTLINSMCKAGN-LNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGF 393

Query: 233 VEEANKTFGEMVE---------------------RFE-------------WNPEHVLAYE 258
           +++A +   EMVE                     R E             + P+ V++Y 
Sbjct: 394 LKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPD-VVSYS 452

Query: 259 TFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI 318
           T +    R +++++A +    M  +   P +  +S+ +  L K         L+  M+ +
Sbjct: 453 TIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSL 512

Query: 319 GFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVH 378
           G  L P+ + Y ++I   C   D+D   R  D+M+  G  PD +TYN++     K  R  
Sbjct: 513 G--LPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTK 570

Query: 379 EVEKFFHEMIKNEWQPTPL-------NC-----ATAITMLLDADEPEI---AIEIWNYIL 423
           E ++   +++  E  P  +       NC      +A+ ++       +   A  +   +L
Sbjct: 571 EAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESML 630

Query: 424 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR-- 481
           + G    E   N ++ G   +G +       +EML+     + VT+  L K+ Y+E +  
Sbjct: 631 QKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAKSLYHEGKEV 690

Query: 482 SMRDIFDSLERRCKTSQ 498
            +  + D   + C+ ++
Sbjct: 691 ELNQLLDYTLKSCRITE 707



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 136/299 (45%), Gaps = 7/299 (2%)

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE--FLNRVKKIVDPDGDSFA 221
           ++A+   ++   +G    V++ N++L A+ R + Q+ +  E  F   V+  V P+  ++ 
Sbjct: 149 NKALSIVNLAKSYGFMPGVLSYNAILDAVIRTK-QSVKIAEGIFKEMVESGVSPNVYTYN 207

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           IL+ G+   GN+E     FGEM ER    P +V+ Y T +    + +++ EA K LR+M 
Sbjct: 208 ILIRGFCTAGNLEMGLXFFGEM-ERNGCLP-NVVTYNTIIDAYCKLRKIGEAFKLLRLMA 265

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
            +   P L  ++  ++ L +        ++ + M    +  +P+ + +N +I   CN  +
Sbjct: 266 LKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRY--VPDRVTFNTLINGYCNVGN 323

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
                    +MV +G  P+ +TY  +   + K   ++   +F  +M      P      T
Sbjct: 324 FHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTT 383

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
            I         + A +I   ++ENG  P   + N L+ G   LGR+ D     +EM+ R
Sbjct: 384 LIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIER 442


>gi|449437378|ref|XP_004136469.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial-like [Cucumis sativus]
 gi|449503560|ref|XP_004162063.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial-like [Cucumis sativus]
          Length = 615

 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 106/477 (22%), Positives = 210/477 (44%), Gaps = 33/477 (6%)

Query: 17  IPSSSSTTTSPTSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHAS---SDDIESALA 73
           +PS+S+  ++P S               +A Y  +    I  IL+  S      +E AL 
Sbjct: 62  LPSNSAVISNPNSA---------IDVKFEASYSPNDLSTISSILSDRSVRPGAALEDALD 112

Query: 74  CTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYA--WNLMVDVLGKNGRFEQ 131
            TGI+P+  L+  V      SP      F WA +     P A  +N +++VL K+  F+ 
Sbjct: 113 RTGIVPSSSLLEAVFDHFDSSPKFLHSLFLWAAKKSGFRPSAALFNRLINVLAKSREFDS 172

Query: 132 MWNAV----RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD----VMSMHGVEQDVV 183
            W+ +    R  +E  ++S+  F  +   Y  AG    A+ +++    + ++ G   + +
Sbjct: 173 AWSLITSRLRGGEESFLVSVEVFVILIRRYARAGMVQPAIRTYEFACNLETISGTGSEGL 232

Query: 184 AVNSLLSAICRQENQTSRALEFLNRVKKI---VDPDGDSFAILLEGWEKEGNVEEANKTF 240
               LL ++C+ E     A E+ NR +++    +P   ++ IL+ GW +   ++ A + +
Sbjct: 233 -FEILLDSLCK-EGHVRVASEYFNRKREMGSSFEPSIRAYNILINGWFRSRKLKHAQRLW 290

Query: 241 GEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV 300
            EM ++ + +P  V+ Y T +    R + V+ A++ +  M+ E   P    ++  +D L 
Sbjct: 291 FEM-KKNKISPT-VVTYGTLIEGYCRMRSVEIAIELVDEMRREGIEPNAIVYNPIVDALG 348

Query: 301 KLNDSTHAVQLWD-IMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFP 359
           +      A+ + +  MV       P +  YN+++   C   D+    +    M+  G  P
Sbjct: 349 EAGRFKEALGMMERFMV---LEQGPTISTYNSLVKGYCKAGDLSGASKILKMMIGRGFTP 405

Query: 360 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 419
              TYN  F    K  ++ E    +++MI++ + P  L     + ML + +   +A+++ 
Sbjct: 406 TPTTYNYFFRFFSKYGKIEESMSLYNKMIESGYAPDKLTYHLLLKMLCEEERLNLAVQVC 465

Query: 420 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
           N +   G     A++  L+  L  + +  +     E M++R I+   +T  +L   F
Sbjct: 466 NEMKARGFDMDLATSTMLMHLLCKMHKFEEAFAEFEHMIHRGIVPQYLTFCRLHDEF 522



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/265 (20%), Positives = 116/265 (43%), Gaps = 15/265 (5%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           A+N++++   ++ + +        MK++ +  ++ T+ ++ + YC     + A+   D M
Sbjct: 269 AYNILINGWFRSRKLKHAQRLWFEMKKNKISPTVVTYGTLIEGYCRMRSVEIAIELVDEM 328

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV----DPDGDSFAILLEGWEK 229
              G+E + +  N ++ A+     +  R  E L  +++ +     P   ++  L++G+ K
Sbjct: 329 RREGIEPNAIVYNPIVDAL----GEAGRFKEALGMMERFMVLEQGPTISTYNSLVKGYCK 384

Query: 230 EGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
            G++  A+K    M+ R F   P     Y  F     +  +++E++     M      P 
Sbjct: 385 AGDLSGASKILKMMIGRGFTPTPT---TYNYFFRFFSKYGKIEESMSLYNKMIESGYAPD 441

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
              +   L +L +      AVQ+ + M   GF++  +L     ++ LLC     +  F  
Sbjct: 442 KLTYHLLLKMLCEEERLNLAVQVCNEMKARGFDM--DLATSTMLMHLLCKMHKFEEAFAE 499

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIK 373
           F+ M+  G  P  LT+  + +  +K
Sbjct: 500 FEHMIHRGIVPQYLTFCRLHDEFMK 524


>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
 gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
          Length = 581

 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/388 (23%), Positives = 169/388 (43%), Gaps = 13/388 (3%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F     RG       +N ++D L K G  E+       M   G + ++ T++ + +  C 
Sbjct: 104 FEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCK 163

Query: 160 AGKYDEAVMSFDVMSMHGVE--QDVVAVNSLLSAICRQENQTSRALEFLNRVKKI---VD 214
            G+ DEA      M+    +   +++  NS L  +C+Q + T+ A E +  ++     V 
Sbjct: 164 VGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQ-SMTAEACELMRSLRDGSLRVS 222

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           PD  +F+ L++G  K G  +EA     +M+    + P +V+ Y   +  L +  +++ A 
Sbjct: 223 PDTVTFSTLIDGLCKCGQTDEACND--DMIAG-GYVP-NVVTYNALVNGLCKADKMERAH 278

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
             +  M  +   P +  +S  +D   K +    A++L   M   G    PN++ +N++I 
Sbjct: 279 AMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCT--PNVVTFNSIID 336

Query: 335 LLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
            LC +D     F+   Q+      PD +T+N++     K     +    F EM+    QP
Sbjct: 337 GLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQP 396

Query: 395 TPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 454
             +     I  L  A + E A +I + +   G+ P   + N L+ GL   GR+ +   F 
Sbjct: 397 DVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFL 456

Query: 455 EEMLNRRILIYEVTMHKLKKAFYNESRS 482
           EEM++   +   +T   L  A    SR+
Sbjct: 457 EEMVSSGCVPESMTYGSLVYALCRASRT 484



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 149/327 (45%), Gaps = 11/327 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N +V+ L K  + E+    +  M + GV   + T++ + D++C A + DEA+     M+
Sbjct: 261 YNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMA 320

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSR---ALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
             G   +VV  NS++  +C+ +        AL+  NR   ++ PD  +F IL+ G  K G
Sbjct: 321 SRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNR---MLVPDKVTFNILIAGACKAG 377

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           N E+A+  F EMV +    P+ V+ +   +  L +  QV+ A   L +M      P +  
Sbjct: 378 NFEQASALFEEMVAK-NMQPD-VMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVT 435

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           ++  +  L K        +  + MV  G   +P  + Y +++  LC     D+  +   +
Sbjct: 436 YNVLVHGLCKSGRIEEPCEFLEEMVSSG--CVPESMTYGSLVYALCRASRTDDALQLVSK 493

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           +   G  PD++TYN++ + L K+ +  +      EM+    QP     A     L  +  
Sbjct: 494 LKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFGGLHRSGN 553

Query: 412 PEIAIEIWNYILENGILPLEASANELL 438
               +E+   +L  G+LP   + + +L
Sbjct: 554 LAGTMELLRVVLAKGMLPDATTCSSIL 580



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 91/390 (23%), Positives = 169/390 (43%), Gaps = 58/390 (14%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSF-DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204
           S+  +  +  S C AG+   A+  F   M+  GV   +V  N++++ +C+  N+    +E
Sbjct: 44  SVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKS-NELGAGME 102

Query: 205 -FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT 263
            F   VK+   PD  ++  L++   K G++EEA +  G M  R      +V+ Y   +  
Sbjct: 103 LFEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSR--GCVPNVVTYSVLING 160

Query: 264 LIRGKQVDEALKFLRVMKGENC--FPTLKFFSNALDILVKLNDSTHAVQLW--------- 312
           L +  ++DEA + ++ M  ++C   P +  +++ LD L K + +  A +L          
Sbjct: 161 LCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLR 220

Query: 313 --------------------------DIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346
                                     D M+  G+  +PN++ YNA++  LC  D ++   
Sbjct: 221 VSPDTVTFSTLIDGLCKCGQTDEACNDDMIAGGY--VPNVVTYNALVNGLCKADKMERAH 278

Query: 347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406
              + MV  G  PD +TY+++ +   K  RV E  +  H M      P  +   + I  L
Sbjct: 279 AMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGL 338

Query: 407 LDADEP----EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR- 461
             +D      +IA++++N +L    +P + + N L+ G    G         EEM+ +  
Sbjct: 339 CKSDRSGEAFQIALQVYNRML----VPDKVTFNILIAGACKAGNFEQASALFEEMVAKNM 394

Query: 462 ---ILIYEVTMHKLKKAFYNESRSMRDIFD 488
              ++ +   +  L KA   +  + RDI D
Sbjct: 395 QPDVMTFGALIDGLCKA--GQVEAARDILD 422


>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 822

 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 157/355 (44%), Gaps = 5/355 (1%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           +G G   S Y+ N ++  L K    E   N  + M   G+  SL TF ++ +     GK 
Sbjct: 155 SGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKV 214

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
            EA +    +  + +  DV    SL+   CR  N       F   VK+  DP+  +++ L
Sbjct: 215 REAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTL 274

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           + G   EG V+EA     EM+E+    P  V  Y   +  L   +  +EA++ +  MK  
Sbjct: 275 INGLCNEGRVDEALDMLEEMIEK-GIEPT-VYTYTLPITALCAIEHEEEAIELVARMKKR 332

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
            C P ++ ++  +  L +L     A+ L+  M+  G  L+PN + YNA+I  LC      
Sbjct: 333 GCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEG--LVPNTVTYNALINELCVGGRFS 390

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
              + F  M  HG+  ++ TYN I + L     + +    F +M+K    PT +   T I
Sbjct: 391 TALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLI 450

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
              L       A  + + + ENG  P E + NEL+ G    G+L     + +EM+
Sbjct: 451 NGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMV 505



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/359 (22%), Positives = 156/359 (43%), Gaps = 6/359 (1%)

Query: 137 RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
           R++KE    +  T++++ +  C  G+ DEA+   + M   G+E  V      ++A+C  E
Sbjct: 258 RMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIE 317

Query: 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
           ++           K+   P+  ++  L+ G  + G +E A   + +M++  E    + + 
Sbjct: 318 HEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLK--EGLVPNTVT 375

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
           Y   +  L  G +   ALK    M+G       + ++  +  L    D   A+ L++ M+
Sbjct: 376 YNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKML 435

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
            +G   +P ++ YN +I       +V+N  R  D M  +G  PD  TYN +     K  +
Sbjct: 436 KMG--PLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGK 493

Query: 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 436
           +     +F EM++    P P++    I       + +IA+ +   + E G  P   S N 
Sbjct: 494 LESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNA 553

Query: 437 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSM--RDIFDSLERR 493
           ++ GL    R S+  +  ++M+ + +L   +T   L        R+     IF  +E+R
Sbjct: 554 VINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKR 612



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 80/388 (20%), Positives = 147/388 (37%), Gaps = 44/388 (11%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAG 161
           R   RG R +   +  ++  L + G+ E        M ++G++ +  T+ ++ +  C  G
Sbjct: 328 RMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGG 387

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221
           ++  A+  F  M  HG   +    N ++  +C                            
Sbjct: 388 RFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLG-------------------------- 421

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNP-EHVLAYETFLITLIRGKQVDEALKFLRVM 280
                    G++E+A   F +M++     P   V+ Y T +   +    V+ A + L +M
Sbjct: 422 ---------GDIEKAMVLFEKMLK---MGPLPTVVTYNTLINGYLTKGNVNNAARLLDLM 469

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
           K   C P    ++  +    K      A   +  MV  G N  PN + Y A+I     + 
Sbjct: 470 KENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLN--PNPVSYTALIDGHSKDG 527

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
            VD       +M   G  P+  +YN +   L K  R  E EK   +M++    P  +   
Sbjct: 528 KVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYT 587

Query: 401 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           T I  L      + A +I++ + +   LP   + + L+ GL   G+  +  R +E     
Sbjct: 588 TLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAERMSEIGCEP 647

Query: 461 RILIYEVTMHKL--KKAFYNESRSMRDI 486
            +  Y   +  L  K  FY   + ++D+
Sbjct: 648 TLDTYSTLVSGLCRKGRFYEAEQLVKDM 675



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/318 (22%), Positives = 142/318 (44%), Gaps = 11/318 (3%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDV 172
           + +N +V    K G+ E      + M E G+   P ++ ++ D +   GK D A+     
Sbjct: 479 WTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKR 538

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEG 231
           M   G   +V + N++++ + + EN+ S A +  ++ V++ + P+  ++  L++G  + G
Sbjct: 539 MEEMGCNPNVESYNAVINGLSK-ENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNG 597

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
             + A K F +M E+ +  P ++  Y + +  L +  + DEA +   +     C PTL  
Sbjct: 598 RTQFAFKIFHDM-EKRKCLP-NLYTYSSLIYGLCQEGKADEAERMSEI----GCEPTLDT 651

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           +S  +  L +      A QL   M   GF   P+  +Y +++   C N +VD+  + F  
Sbjct: 652 YSTLVSGLCRKGRFYEAEQLVKDMKERGF--CPDREIYYSLLIAHCKNLEVDHALKIFHS 709

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           +   G       Y  +   L K  +V E +  F  M++ EW    +     +  LL   E
Sbjct: 710 IEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGE 769

Query: 412 PEIAIEIWNYILENGILP 429
            ++ +++ + +      P
Sbjct: 770 LDLCMKLLHIMESKNFTP 787



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 96/214 (44%), Gaps = 2/214 (0%)

Query: 259 TFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI 318
           T LI L + + V+ A    + M      P+L  F+  ++IL K      A  +   +   
Sbjct: 168 TLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQI--F 225

Query: 319 GFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVH 378
            ++L P++  Y ++I   C N ++D  F  FD+MV  G  P+S+TY+ +   L    RV 
Sbjct: 226 QYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVD 285

Query: 379 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 438
           E      EMI+   +PT       IT L   +  E AIE+   + + G  P   +   L+
Sbjct: 286 EALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALI 345

Query: 439 VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
            GL  LG+L        +ML   ++   VT + L
Sbjct: 346 SGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNAL 379


>gi|356557306|ref|XP_003546958.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g65820-like [Glycine max]
          Length = 654

 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 94/403 (23%), Positives = 171/403 (42%), Gaps = 9/403 (2%)

Query: 62  HASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLM 119
           H+    +E AL  +G++  P L   VL    D+ + A  F+ WA +  G RL   A+  M
Sbjct: 103 HSRVPKLELALRESGVVVRPGLTERVLSRCGDAGNLAYRFYSWASKQSGHRLDHDAYKAM 162

Query: 120 VDVLGKNGRFEQMWNAVRVMKEDG--VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           + VL +  +F  +W  +  M+++   +++   F  +   +  A    +AV   D M  +G
Sbjct: 163 IKVLSRMRQFGAVWALIEEMRQENPHLITPQVFVILMRRFASARMVHKAVEVLDEMPKYG 222

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
            E D      LL A+C+       A      ++    P    F  LL GW KEG + EA 
Sbjct: 223 CEPDEYVFGCLLDALCKN-GSVKEAASLFEDMRYRWKPSVKHFTSLLYGWCKEGKLMEAK 281

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297
               +M +     P+ ++ Y   L    +  ++ +A   L+ M+ + C P    ++  + 
Sbjct: 282 HVLVQMKD-MGIEPD-IVVYNNLLGGYAQAGKMGDAYDLLKEMRRKRCEPNATSYTVLIQ 339

Query: 298 ILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGA 357
            L K      A +L+  M   G     +++ Y+ +I   C    +   +   D+M+  G 
Sbjct: 340 SLCKHERLEEATRLFVEMQTNG--CQADVVTYSTLISGFCKWGKIKRGYELLDEMIQQGH 397

Query: 358 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 417
           FP+ + Y  I     K + + E ++  +EM K    P      T I +     E +  I+
Sbjct: 398 FPNQVIYQHIMLAHEKKEELEECKELVNEMQKIGCAPDLSIYNTVIRLACKLGEVKEGIQ 457

Query: 418 IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           +WN +  +G+ P   +   ++ G    G L +   + +EM+ R
Sbjct: 458 LWNEMESSGLSPGMDTFVIMINGFLEQGCLVEACEYFKEMVGR 500


>gi|297739643|emb|CBI29825.3| unnamed protein product [Vitis vinifera]
          Length = 722

 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 112/463 (24%), Positives = 189/463 (40%), Gaps = 46/463 (9%)

Query: 35  PTRPRFPT-HLDAPYISSSARIICEILA-HASSDDIESALACTGIIPTPDLVHEVLQLSY 92
           P + RF   H +    +  A I  E+L    + + +E AL       + ++V++V++   
Sbjct: 16  PKQSRFRCLHANLFTTAQGAAISNEVLTVMETVNPMEDALEKLAPFLSSEIVNDVMR-EQ 74

Query: 93  DSPSSAVDFFRWAGRGQRLSPYAW---NLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLP 148
             P     FF W  R  R S  +W   NL++D+L K+  F+  W  +  +K   + +  P
Sbjct: 75  RRPELGFRFFIWTTR--RRSFRSWVTHNLVIDMLAKDDGFDTYWKILEELKNSNIQIPPP 132

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF+ +  +Y  +G  ++AV SF  M   G + DV   NS+L  + ++E     AL   N+
Sbjct: 133 TFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQKE-VFLLALAVYNQ 191

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           + K+  +P+  +F ILL G  K G  ++A K F EM ++    P + + Y   L  L + 
Sbjct: 192 MLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQK--GIPPNTMIYTIILSGLCQA 249

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF------- 320
           K+ D+  + L  MK   C P     +  LD   KL     A  L  +    G+       
Sbjct: 250 KRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGY 309

Query: 321 --------------------------NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
                                      + P++++Y  +I   C    VD      + M  
Sbjct: 310 SSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQ 369

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 414
            G  PD+  YN + +       + +      E+ KN+  PT       I  +      + 
Sbjct: 370 RGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDE 429

Query: 415 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           A +I+N +   G  P   + N L+ GL   G L + R    +M
Sbjct: 430 ARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKM 472



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 116/258 (44%), Gaps = 10/258 (3%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
           N ++D   K G+ ++ +  +++ +++G VL +  ++S+ D    A +YDE       M  
Sbjct: 275 NALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFK 334

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVE 234
            G+E DVV    L+   C +      AL  LN + ++ + PD   +  L++G+   G ++
Sbjct: 335 AGIEPDVVLYTILIRGFC-EVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLD 393

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           +A ++    + + +  P     Y   +  + R   +DEA +    M+   C P++  F+ 
Sbjct: 394 KA-RSLQLEISKNDCFPTSC-TYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNA 451

Query: 295 ALDILVKLNDSTHAVQLWDIM-VGIGFNLMPNLIMYNAVIGLLCNN----DDVDNVFRFF 349
            +D L K  +   A  L+  M +G   +L   L      +    N     D  ++ FR  
Sbjct: 452 LIDGLCKAGELEEARHLFYKMEIGKNPSLFLRLSQGADRVMDTANGFHRVDREEDAFRVL 511

Query: 350 DQMVFHGAFPDSLTYNMI 367
           DQMV +G  P S  Y  +
Sbjct: 512 DQMVKNGCTPSSAVYKCL 529



 Score = 42.4 bits (98), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 119/283 (42%), Gaps = 23/283 (8%)

Query: 112 SPYAWNLMVDVLGKNGRFEQ---MWNAVRVMKEDGV-LSLPTFAS-IFDSYCGAGKYD-- 164
           S   +N ++D L K G  E+   ++  + + K   + L L   A  + D+  G  + D  
Sbjct: 445 SIMTFNALIDGLCKAGELEEARHLFYKMEIGKNPSLFLRLSQGADRVMDTANGFHRVDRE 504

Query: 165 -EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
            +A    D M  +G          L++  CR+   +     +L  ++ +   + ++  + 
Sbjct: 505 EDAFRVLDQMVKNGCTPSSAVYKCLMTWSCRKGKLSVAFSLWLKYLRSLPSQEDETLKLA 564

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
            E +EK G +E+A +   EM   F+ N   +  Y  +LI L + ++ +EALK   V+K  
Sbjct: 565 EEHFEK-GELEKAVRCLLEM--NFKLNNFEIAPYTIWLIGLCQARRSEEALKIFLVLK-- 619

Query: 284 NCF-----PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            C      P+     N    L K  +   AV ++   +  GF LMP +   N ++  L  
Sbjct: 620 ECQMDVNPPSCVMLING---LCKDGNLEMAVDIFLYTLEKGFMLMPRIC--NQLLRSLIL 674

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 381
            D + +     ++M   G   D   ++ I   L+   +  E+E
Sbjct: 675 QDKMKHALDLLNRMNSAGYDLDEYLHHRIKSYLLSVWKAQEME 717


>gi|293332689|ref|NP_001168961.1| hypothetical protein [Zea mays]
 gi|223974035|gb|ACN31205.1| unknown [Zea mays]
 gi|413921836|gb|AFW61768.1| hypothetical protein ZEAMMB73_696968 [Zea mays]
          Length = 521

 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 161/372 (43%), Gaps = 12/372 (3%)

Query: 87  VLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS 146
            L L Y    SAVD     G G    P AW+L V   GK  RF+  W  VR M+  GVL+
Sbjct: 112 ALALRYGDECSAVDGTD--GAGLPPPPEAWHLAVWAAGKARRFDLAWEIVRRMRNRGVLT 169

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206
                 + + Y  A + ++A+ +FDVM    +E D     SLL A+C+ +N    A E L
Sbjct: 170 CRVMVILMERYAAASEVNKAIKTFDVMEKFKIESDQSVFYSLLHALCKIKN-IEDAEELL 228

Query: 207 NRVKKIVDPDGDSFAILLEGWEKE-GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
              KK      + F I+L+GW     +V EA + + EM       P+  ++Y   +    
Sbjct: 229 FLRKKFFPLTAEGFNIILDGWCNVITDVAEAKRVWREMSNHC-ITPDG-MSYTLMISCFS 286

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN 325
           +   + + L+    MK     P +  +++ + +L + N    A  ++  +   G  L P+
Sbjct: 287 KVGNLFDTLRVYDEMKKRGWIPGIVVYNSLVYVLTRENCVKDAHNIFSKLTDEG--LQPD 344

Query: 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 385
           +  YN +I  LC +  +D   +  + M+  G  P   TY+      +K + + E  K   
Sbjct: 345 VETYNNMIVPLCESCKLDEARKVMESMILRGIVPTISTYH----AFLKQEGIDESLKLLQ 400

Query: 386 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
           +M ++   P        I      +E   A+ +WN + +  I P+ A    L+ GL   G
Sbjct: 401 KMKEDGCGPKSDTFVMLIDKFFLLNESGNALRVWNEMRKYEISPVRAHYMTLVQGLVKHG 460

Query: 446 RLSDVRRFAEEM 457
            +     + +EM
Sbjct: 461 CIPRALEYYDEM 472


>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 554

 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/383 (23%), Positives = 169/383 (44%), Gaps = 13/383 (3%)

Query: 100 DFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCG 159
           +  R  G  +R        ++  L  +GR  +   A RV+   G   +  + ++   YCG
Sbjct: 83  EALRLVGSARRPDAGTCAALIKKLSASGRTAE---ARRVLAACGP-DVMAYNAMVAGYCG 138

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGD 218
           AG+ D A      M    VE D    N+L+  +C +  +T+ AL  L+  +++   PD  
Sbjct: 139 AGQLDAARRLVAEMP---VEPDAYTYNTLIRGLCGR-GRTANALAVLDEMLRRRCVPDVV 194

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++ ILLE   K    ++A K   EM  R +     ++ Y   +  + +  +VD+A++FL+
Sbjct: 195 TYTILLEATCKRSGYKQAMKLLDEM--RDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLK 252

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            +    C P    ++  L  L        A +L   M   G    PN++ +N +I  LC 
Sbjct: 253 NLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCP--PNVVTFNMLISFLCR 310

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
              V+      +Q+  +G  P+SL+YN +     K K++ +   F   M+     P  ++
Sbjct: 311 KGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVS 370

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
             T +T L  + E ++A+E+ + + + G  P+  S N ++ GL   G+  +      EM+
Sbjct: 371 YNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMV 430

Query: 459 NRRILIYEVTMHKLKKAFYNESR 481
           ++ +    +T   +      E R
Sbjct: 431 SKGLQPDIITYSTIAAGLCREDR 453



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 107/457 (23%), Positives = 192/457 (42%), Gaps = 50/457 (10%)

Query: 47  PYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAG 106
           P   + A +I ++ A   + +    LA  G    PD++     ++    +  +D  R   
Sbjct: 94  PDAGTCAALIKKLSASGRTAEARRVLAACG----PDVMAYNAMVAGYCGAGQLDAARRLV 149

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKE----DGVLSLPTFASIFDSYCGA 160
               + P  Y +N ++  L   GR     NA+ V+ E      V  + T+  + ++ C  
Sbjct: 150 AEMPVEPDAYTYNTLIRGLCGRGR---TANALAVLDEMLRRRCVPDVVTYTILLEATCKR 206

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDS 219
             Y +A+   D M   G   D+V  N +++ IC QE +   A+EFL  +     +P+  S
Sbjct: 207 SGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGIC-QEGRVDDAIEFLKNLPSYGCEPNTVS 265

Query: 220 FAILLEGWEKEGNVEEANKTFGEM----------------------------VERFEWNP 251
           + I+L+G       E+A +  GEM                            +E  E  P
Sbjct: 266 YNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIP 325

Query: 252 EH-----VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
           ++      L+Y   L    + K++D+A+ FL +M    C+P +  ++  L  L +  +  
Sbjct: 326 KYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVD 385

Query: 307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM 366
            AV+L   +   G    P LI YN VI  L             ++MV  G  PD +TY+ 
Sbjct: 386 VAVELLHQLKDKG--CAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYST 443

Query: 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 426
           I   L +  R+ +  + F ++     +P  +     I  L    E   AI+++ Y++ NG
Sbjct: 444 IAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNG 503

Query: 427 ILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
            +P E++   L+ GL   G + + R   +E+ +R ++
Sbjct: 504 CMPNESTYTILIEGLAYEGLIKEARDLLDELCSRGVV 540


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 98/443 (22%), Positives = 192/443 (43%), Gaps = 71/443 (16%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKE-----DGVLSLPTFASIFDSYCGAGKYDEAVMS 169
            +N++++ L + GR E+    +  M       DGV    T+ ++ + YC  G + +A++ 
Sbjct: 275 TYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGV----TYNTLVNGYCKVGNFHQALVL 330

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWE 228
              M  +G+  DVV   SL++ +C+  N  +RA+EF +++  + + P+G ++  L+ G+ 
Sbjct: 331 HSEMLRNGLPPDVVTYTSLINTMCKAGN-LNRAMEFFDQMHVRGLRPNGVTYTSLINGFS 389

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           ++G ++EA + + EM+      P  ++ Y   L       +++EA+  LR M+G+   P 
Sbjct: 390 QKGFMDEAYRIWDEMIR--SGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPD 447

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFN--------------------------- 321
           +  +S  +    +  +   A Q+   MV  G +                           
Sbjct: 448 VVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQ 507

Query: 322 ------LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 375
                 L+P+   Y ++I   C   D++      D+M+  G  PD++TYN++   L K  
Sbjct: 508 EMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQA 567

Query: 376 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI---------------AIEIWN 420
           R  E ++   ++  +E  P  +   T I    D +   +               A +++ 
Sbjct: 568 RTREAKRLLLKLFYDESIPNGITYDTLIESCSDIEFKSVVALIKGFCMKGLMNEADQVFE 627

Query: 421 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 480
            +++    P EA  N ++ G    G +    +  +EM++   + + VT+  L KA Y+E 
Sbjct: 628 SMIKRNQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVDFGFIPHTVTIIALVKALYSEG 687

Query: 481 RS------MRDIFDSLERRCKTS 497
                   +RDI     R CK S
Sbjct: 688 MDEQLNLVIRDIL----RSCKLS 706



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/423 (21%), Positives = 177/423 (41%), Gaps = 58/423 (13%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G  L+ +++N+++      G  E        M+ +  L ++ T+ ++  +YC   + DEA
Sbjct: 198 GVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEA 257

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICR--QENQTSRALEFLNRVKKIVDPDGDSFAILL 224
                 M + G+E +++  N +++ +CR  +  +TS  L  ++R  K   PDG ++  L+
Sbjct: 258 FKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDR--KGFAPDGVTYNTLV 315

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G+ K GN  +A     EM+      P  V+ Y + + T+ +   ++ A++F   M    
Sbjct: 316 NGYCKVGNFHQALVLHSEMLR--NGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRG 373

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF------------------------ 320
             P    +++ ++   +      A ++WD M+  GF                        
Sbjct: 374 LRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAI 433

Query: 321 ---------NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECL 371
                     L P+++ Y+ +I   C   ++D  F+   +MV  G  PD++TY+ + + L
Sbjct: 434 GLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGL 493

Query: 372 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 431
            + +R++E    F EM+     P      + I       +   A+ + + +++ G LP  
Sbjct: 494 CEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDT 553

Query: 432 ASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLE 491
            + N L+ GL    R  + +R                   L K FY+ES      +D+L 
Sbjct: 554 VTYNVLINGLNKQARTREAKRL------------------LLKLFYDESIPNGITYDTLI 595

Query: 492 RRC 494
             C
Sbjct: 596 ESC 598



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 95/229 (41%), Gaps = 9/229 (3%)

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST-HAVQLWDIMVGIGFNLMPNLIM 328
           +++AL  + + K     P +  ++  LD +V+       A +++  M+  G +L  N+  
Sbjct: 148 IEKALNIVDLAKLNGFMPGVLSYNAILDSIVRCRKPVIFAEKVYREMIASGVSL--NVFS 205

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           YN +I   C   +++   RFF++M  +   P+ +TYN +     K KR+ E  K    M 
Sbjct: 206 YNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMG 265

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
               +P  L     I  L      E    +   +   G  P   + N L+ G   +G   
Sbjct: 266 LEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFH 325

Query: 449 DVRRFAEEMLNRR----ILIYEVTMHKLKKAFYNESRSMRDIFDSLERR 493
                  EML       ++ Y   ++ + KA  N +R+M + FD +  R
Sbjct: 326 QALVLHSEMLRNGLPPDVVTYTSLINTMCKAG-NLNRAM-EFFDQMHVR 372


>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
 gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/401 (23%), Positives = 166/401 (41%), Gaps = 50/401 (12%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVL--SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           N+M+      G+ +        + +D     +L T+  + ++Y   G  DEA+   D M 
Sbjct: 83  NIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTILIEAYILEGGIDEALKLLDEML 142

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNV 233
             G+E D    N +   +C+ E +  RA EF+  +  +   PD  ++ ILL     +G  
Sbjct: 143 SRGLEPDTFTYNVITRGLCK-EGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGKW 201

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           +E  K   E+  R      +V+ Y   + +L R  +++E++  ++VMK +   P    + 
Sbjct: 202 DEGEKWMSEIFSR--GCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYD 259

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF---- 349
             +    +      A++  D M+  GF  +P+++ YN ++  LC N + D+    F    
Sbjct: 260 PLIAAFCREGKLDMAIEFLDCMICDGF--LPDIVNYNTIMAALCKNGNGDHAVEIFGKLD 317

Query: 350 -------------------------------DQMVFHGAFPDSLTYNMIFECLIKNKRVH 378
                                           QM+  G  PD +TYN +  CL ++  V 
Sbjct: 318 EVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSLISCLCRDGMVD 377

Query: 379 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 438
           E      +M+   +QP  ++  T +  L  A   + AIE+   ++ENG  P E +   L+
Sbjct: 378 EAIGLLADMLSGRFQPNIVSYKTVLLGLCKAHRIDDAIEVLAAMIENGCQPNETTYTLLI 437

Query: 439 VGLRNLGRLSDVRRFAEEMLNRRIL---IYEVTMHKLKKAF 476
            G+      S  R  A E+ N   +   I E +  +L K F
Sbjct: 438 EGI----GFSGSRTQAMELANSLYIMNAISEDSFKRLNKTF 474



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 138/333 (41%), Gaps = 10/333 (3%)

Query: 135 AVRVM---KEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
           A RVM   ++ G   +  + ++   +C A + + A    D M   G   DVV  N ++  
Sbjct: 29  ATRVMGILEKHGKPDVFAYNAVISGFCKANRIESAKTVLDRMKRKGFSPDVVTHNIMIGT 88

Query: 192 ICRQENQTSRALEFLNRVKKI--VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW 249
            C +  +   AL+    + K     P   ++ IL+E +  EG ++EA K   EM+ R   
Sbjct: 89  FCGK-GKIDLALKVFEELLKDNNCKPTLITYTILIEAYILEGGIDEALKLLDEMLSR-GL 146

Query: 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV 309
            P+    Y      L +  +VD A +F+R +    C P +  ++  L  L+         
Sbjct: 147 EPD-TFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGE 205

Query: 310 QLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFE 369
           +    +   G    PN++ Y+ +I  LC +  ++        M   G  PD+  Y+ +  
Sbjct: 206 KWMSEIFSRGCE--PNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIA 263

Query: 370 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
              +  ++    +F   MI + + P  +N  T +  L      + A+EI+  + E G  P
Sbjct: 264 AFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCPP 323

Query: 430 LEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
             +S N +L  L + G          +ML++ I
Sbjct: 324 NVSSYNTMLSALWSSGDRYRALGMISQMLSKGI 356



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 126/281 (44%), Gaps = 6/281 (2%)

Query: 179 EQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANK 238
           + DV+    L+       N   +A   +  ++K   PD  ++  ++ G+ K   +E A K
Sbjct: 7   QPDVILCTKLIKGFFNSRN-IDKATRVMGILEKHGKPDVFAYNAVISGFCKANRIESA-K 64

Query: 239 TFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK-FLRVMKGENCFPTLKFFSNALD 297
           T  + ++R  ++P+ V+ +   + T     ++D ALK F  ++K  NC PTL  ++  ++
Sbjct: 65  TVLDRMKRKGFSPD-VVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTILIE 123

Query: 298 ILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGA 357
             +       A++L D M+  G  L P+   YN +   LC    VD  F F   +   G 
Sbjct: 124 AYILEGGIDEALKLLDEMLSRG--LEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGC 181

Query: 358 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 417
            PD +TYN++   L+   +  E EK+  E+     +P  +  +  I+ L    + E ++ 
Sbjct: 182 KPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVN 241

Query: 418 IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
           +   + E G+ P     + L+      G+L     F + M+
Sbjct: 242 LVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMI 282



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/265 (22%), Positives = 113/265 (42%), Gaps = 42/265 (15%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG   +   +++++  L ++G+ E+  N V+VMKE G+      +  +  ++C  GK D 
Sbjct: 214 RGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDM 273

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILL 224
           A+   D M   G   D+V  N++++A+C+  N    A+E   ++ ++   P+  S+  +L
Sbjct: 274 AIEFLDCMICDGFLPDIVNYNTIMAALCKNGNG-DHAVEIFGKLDEVGCPPNVSSYNTML 332

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
                 G+   A     +M+ +   +P+ V+ Y + +  L R   VDEA+  L       
Sbjct: 333 SALWSSGDRYRALGMISQMLSK-GIDPD-VITYNSLISCLCRDGMVDEAIGLLA------ 384

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
                                       D++ G      PN++ Y  V+  LC    +D+
Sbjct: 385 ----------------------------DMLSG---RFQPNIVSYKTVLLGLCKAHRIDD 413

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFE 369
                  M+ +G  P+  TY ++ E
Sbjct: 414 AIEVLAAMIENGCQPNETTYTLLIE 438


>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
 gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
          Length = 567

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 124/283 (43%), Gaps = 7/283 (2%)

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA 236
           G E +V   N LL  + R+      +  F   + K   PD  +FAILL G  +   +E+A
Sbjct: 2   GYEHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKA 61

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
            K  G M E     P+  + Y   +    + K   +A KFL  M   +C PT+  ++N +
Sbjct: 62  RKLLGRMKE-MGCVPDDAI-YNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIV 119

Query: 297 DILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG 356
           D L K   +  AV+L D M   G +  PN+  YN ++  LC    +D   +  ++M   G
Sbjct: 120 DGLCKAERTRDAVKLLDEMRDKGCS--PNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRG 177

Query: 357 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 416
            FPD +TYN   + L K  RV E  KF   M      P  ++  T I  L  + + + A 
Sbjct: 178 YFPDVVTYNSFIKGLCKCDRVDEARKFLARM---PVTPDVVSYTTVINGLCKSGDLDSAS 234

Query: 417 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
            + +++   G  P   + + L+ G    G +       + ML 
Sbjct: 235 RMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLK 277



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 81/361 (22%), Positives = 166/361 (45%), Gaps = 20/361 (5%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + + +++  L ++ + E+    +  MKE G +     + ++   Y  A  + +A      
Sbjct: 43  FTFAILLRGLCRSNQLEKARKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAE 102

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEG 231
           M  +     VV   +++  +C+ E +T  A++ L+ ++ K   P+  ++ +++EG  +E 
Sbjct: 103 MVKNHCLPTVVTYTNIVDGLCKAE-RTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEER 161

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            ++EA K   EM  R  + P+ V+ Y +F+  L +  +VDEA KFL  M      P +  
Sbjct: 162 KLDEAKKMLEEMAVR-GYFPD-VVTYNSFIKGLCKCDRVDEARKFLARMPVT---PDVVS 216

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           ++  ++ L K  D   A ++ D M   G    P+++ Y+++I   C   +V+      D 
Sbjct: 217 YTTVINGLCKSGDLDSASRMLDHMSNRGCT--PDVVTYSSLIDGFCKGGEVERAMGLLDS 274

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M+  G  P+ + YN +   L +   + + E    EM +  + P  ++    I  L  A+ 
Sbjct: 275 MLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAER 334

Query: 412 PEIAIEIWNYILENGILPLEASANELLV----------GLRNLGRLSDVRRFAEEMLNRR 461
            + A  +++ ++E G  P  +S + L+V          GL   GR  +      ++L+ +
Sbjct: 335 VKKAKAVFDRMVERGCTPNASSYSMLIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEK 394

Query: 462 I 462
           I
Sbjct: 395 I 395



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 145/326 (44%), Gaps = 15/326 (4%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++  +++ L K+G  +     +  M   G    + T++S+ D +C  G+ + A+   D M
Sbjct: 216 SYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSM 275

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGN 232
              G   ++VA NSLL A+ R      +A + L  + ++   PD  S+   ++G  K   
Sbjct: 276 LKLGCRPNMVAYNSLLGALHRL-GHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAER 334

Query: 233 VEEANKTFGEMVER--------FEWNPEHVLAYETFLITLIRGKQVDEALK-FLRVMKGE 283
           V++A   F  MVER        +      +L Y   L  L +G + DEA   F +V+  +
Sbjct: 335 VKKAKAVFDRMVERGCTPNASSYSMLIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEK 394

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
            C P + F++  LD   K      A+Q+   M+        N++ +N ++  LC +D + 
Sbjct: 395 ICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLEKN---CCNVVTWNILVHGLCVDDRLS 451

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
           +       MV  G  PD +TY  + + + K  +     + F E +K    P  +  +  I
Sbjct: 452 DAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALI 511

Query: 404 TMLLDADEPEIAIEIWNYILENGILP 429
           T L+  +  E A  ++  ++E   +P
Sbjct: 512 TGLVHENMAEEAYLLFTKLVERRWVP 537



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/320 (20%), Positives = 126/320 (39%), Gaps = 50/320 (15%)

Query: 93  DSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFA 151
           DS S  +D    + RG       ++ ++D   K G  E+    +  M + G   ++  + 
Sbjct: 231 DSASRMLD--HMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYN 288

Query: 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK 211
           S+  +    G   +A      M   G   DVV+ N+ +  +C+ E        F   V++
Sbjct: 289 SLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVER 348

Query: 212 IVDPDGDSFA----------ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFL 261
              P+  S++          +LL+G  K G  +EA   F ++++     P+ V  Y   L
Sbjct: 349 GCTPNASSYSMLIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPD-VFFYNVML 407

Query: 262 ITLIRGKQVDEALKFLRVMKGENC----------------------------------FP 287
            +  + +Q+D+AL+  + M  +NC                                   P
Sbjct: 408 DSHCKRRQIDKALQIHKQMLEKNCCNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIP 467

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFR 347
               +   +D + K   S  A++L++  V  G   +P+++ Y+A+I  L + +  +  + 
Sbjct: 468 DFVTYGTLVDAMCKCGKSAAALELFEEAVKGG--CVPDVVTYSALITGLVHENMAEEAYL 525

Query: 348 FFDQMVFHGAFPDSLTYNMI 367
            F ++V     PD  T  ++
Sbjct: 526 LFTKLVERRWVPDDKTLGLL 545



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 61/137 (44%)

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           P+   +  ++  LC ++ ++   +   +M   G  PD   YN +     K K   +  KF
Sbjct: 40  PDAFTFAILLRGLCRSNQLEKARKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKF 99

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
             EM+KN   PT +     +  L  A+    A+++ + + + G  P   + N ++ GL  
Sbjct: 100 LAEMVKNHCLPTVVTYTNIVDGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCE 159

Query: 444 LGRLSDVRRFAEEMLNR 460
             +L + ++  EEM  R
Sbjct: 160 ERKLDEAKKMLEEMAVR 176


>gi|357142780|ref|XP_003572691.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial-like [Brachypodium distachyon]
          Length = 501

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/398 (24%), Positives = 170/398 (42%), Gaps = 10/398 (2%)

Query: 71  ALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQ--RLSPYAWNLMVDVLGKNGR 128
            + C GI PT ++V  +L    D   SA+  F+WA      + + YA + M+D+LGK  +
Sbjct: 73  GIGCPGIQPTSNIVDGLLSKFGDDWKSALGLFQWAQSSGNYKHTAYACSRMIDLLGKMRQ 132

Query: 129 FEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSL 188
            +QMW+ +  M   G++++   A+      GA ++ +AV+ FD +   G+E++   +N L
Sbjct: 133 IDQMWDLLSDMHCRGLVTVEAAATSIRRLAGARRWKDAVLLFDKLGDMGLERNTETMNVL 192

Query: 189 LSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFE 248
           L A+C+ E +   A +    +   + PD  +F I + GW     ++EA  T  EM  + +
Sbjct: 193 LDALCK-EKKVEVARKVFLVLSPHIQPDAYTFNIFVHGWCSARRIDEAMWTIEEM--KAQ 249

Query: 249 WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHA 308
             P  V+ Y T L    +        + L  M  E C P +  ++  +  L K +    A
Sbjct: 250 GFPPSVITYTTVLEAYCKQHNFRMVYEILDSMSSEGCHPNVITYTMIMTSLAKCHMFEEA 309

Query: 309 VQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSL-TYNMI 367
           + +   M   G    P+ + YN++I LL     +    + F   +     P SL TYN +
Sbjct: 310 LSVSHRMKSSGCK--PDTLFYNSLINLLGKAGHLSEASQVFQVEMPMNGVPRSLATYNTM 367

Query: 368 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD-ADEPEIAIEIWNYILENG 426
                      +      EM     +P        + + L    + +    + N ++   
Sbjct: 368 ISVFCYKDLDEDALSVLKEMETQSCKPDLQTYRPLLRLFLSRRGQDDTVRNLLNELMNKH 427

Query: 427 ILPLEASANELLV-GLRNLGRLSDVRRFAEEMLNRRIL 463
            L L+     LL+ GL  +G      R  +EM+   I+
Sbjct: 428 SLGLDLDTYTLLIHGLCRVGETDWAYRLFDEMVGSEIV 465



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 124/282 (43%), Gaps = 12/282 (4%)

Query: 114 YAWNLMVDVLGKNGRF-EQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFD 171
           Y +N+ V       R  E MW  +  MK  G   S+ T+ ++ ++YC    +       D
Sbjct: 221 YTFNIFVHGWCSARRIDEAMWT-IEEMKAQGFPPSVITYTTVLEAYCKQHNFRMVYEILD 279

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKE 230
            MS  G   +V+    +++++ +  +    AL   +R+K     PD   +  L+    K 
Sbjct: 280 SMSSEGCHPNVITYTMIMTSLAKC-HMFEEALSVSHRMKSSGCKPDTLFYNSLINLLGKA 338

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE-ALKFLRVMKGENCFPTL 289
           G++ EA++ F ++       P  +  Y T +I++   K +DE AL  L+ M+ ++C P L
Sbjct: 339 GHLSEASQVF-QVEMPMNGVPRSLATYNT-MISVFCYKDLDEDALSVLKEMETQSCKPDL 396

Query: 290 KFFSNALDILV--KLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFR 347
           + +   L + +  +  D T    L ++M      L  +L  Y  +I  LC   + D  +R
Sbjct: 397 QTYRPLLRLFLSRRGQDDTVRNLLNELMNKHSLGL--DLDTYTLLIHGLCRVGETDWAYR 454

Query: 348 FFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389
            FD+MV     P   T  ++     + K    VE+  + M +
Sbjct: 455 LFDEMVGSEIVPRYRTCELLLSEAQRKKMEEWVERIQNYMTR 496


>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 754

 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 95/389 (24%), Positives = 164/389 (42%), Gaps = 39/389 (10%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMK-EDGVL-SLPTFASIFDSYCGAGKYDE 165
           G   S  + N++V    K GR E   N ++ M  +DG      TF ++ +  C AG    
Sbjct: 254 GCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKH 313

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILL 224
           A+   DVM   G + DV   NS++S +C+   +   A+EFL++ + +   P+  ++  L+
Sbjct: 314 AIEIMDVMLQEGYDPDVYTYNSVISGLCKL-GEVKEAVEFLDQMITRDCSPNTVTYNTLI 372

Query: 225 EGWEKEGNVEEANK---------------TFGEMVERFEWNPEHVLAYETF--------- 260
               KE  VEEA +               TF  +++       H +A E F         
Sbjct: 373 STLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCE 432

Query: 261 ---------LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
                    + +L    ++DEAL  L+ M+   C  ++  ++  +D   K N    A ++
Sbjct: 433 PDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKIREAEEI 492

Query: 312 WDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECL 371
           +D M   G +   N + YN +I  LC +  V++  +  DQM+  G  PD  TYN +    
Sbjct: 493 FDEMEVHGVS--RNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHF 550

Query: 372 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 431
            +   + +       M  N  +P  +   T I+ L  A   E+A ++   I   GI    
Sbjct: 551 CRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGIALTP 610

Query: 432 ASANELLVGLRNLGRLSDVRRFAEEMLNR 460
            + N ++ GL    + ++      EML +
Sbjct: 611 HAYNPVIQGLFRKRKTTEAINLFREMLEQ 639



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 82/386 (21%), Positives = 146/386 (37%), Gaps = 79/386 (20%)

Query: 96  SSAVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFAS 152
           S+A+  F  A +    SP    +  ++  LG++G F+ M   +  MK  G  +    F  
Sbjct: 64  SAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMRKILEDMKNSGCEMGTSPFLI 123

Query: 153 IFDSYCGAGKYDEAV------------------------------------MSFDVMSMH 176
           + +SY      DE +                                    ++   MS+ 
Sbjct: 124 LIESYAQFELQDEILGVVHWMIDDFGLKPDTHFYNRMLNLLVDGNNLKLVEIAHAKMSVW 183

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA 236
           G++ DV   N L+ A+CR        L   +     + PD  +F  +++G+ +EG+++ A
Sbjct: 184 GIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGA 243

Query: 237 NKTFGEMVE-RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
            +   +MVE    W+    ++    +    +  +V++AL F++ M  ++ F         
Sbjct: 244 LRIREQMVEFGCSWSN---VSVNVIVHGFCKEGRVEDALNFIQEMSNQDGF--------- 291

Query: 296 LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
                                       P+   +N ++  LC    V +     D M+  
Sbjct: 292 ---------------------------FPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQE 324

Query: 356 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 415
           G  PD  TYN +   L K   V E  +F  +MI  +  P  +   T I+ L   ++ E A
Sbjct: 325 GYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEA 384

Query: 416 IEIWNYILENGILPLEASANELLVGL 441
            E+   +   GILP   + N L+ GL
Sbjct: 385 TELARVLTSKGILPDVCTFNSLIQGL 410



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 104/244 (42%), Gaps = 14/244 (5%)

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           LL+    + +   A + F    ++  ++PE  L YE  L+ L R    D+  K L  MK 
Sbjct: 53  LLDSLRSQADDSAALRLFNLASKKPNFSPEPAL-YEEILLRLGRSGSFDDMRKILEDMKN 111

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI------GFNLMPNLIMYNAVIGLL 336
             C    +  ++   IL+   +S    +L D ++G+       F L P+   YN ++ LL
Sbjct: 112 SGC----EMGTSPFLILI---ESYAQFELQDEILGVVHWMIDDFGLKPDTHFYNRMLNLL 164

Query: 337 CNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 396
            + +++  V     +M   G  PD  T+N++ + L +  ++        +M      P  
Sbjct: 165 VDGNNLKLVEIAHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDE 224

Query: 397 LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 456
               T +   ++  + + A+ I   ++E G      S N ++ G    GR+ D   F +E
Sbjct: 225 KTFTTIMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQE 284

Query: 457 MLNR 460
           M N+
Sbjct: 285 MSNQ 288


>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
          Length = 851

 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/400 (22%), Positives = 174/400 (43%), Gaps = 40/400 (10%)

Query: 110 RLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           R+SP  Y +N+++      G  ++       M+ +G L ++ T+ ++ D+YC  G+ DEA
Sbjct: 5   RVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEA 64

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLE 225
                 MS  G++ ++++ N +++ +CR E     A E L  +  K   PD  ++  LL 
Sbjct: 65  FGLLKSMSSKGMQPNLISYNVIINGLCR-EGSMKEAWEILEEMGYKGFTPDEVTYNTLLN 123

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+ KEGN  +A     EMV R   +P  V+ Y   + ++ + + ++ A++F   M+    
Sbjct: 124 GYCKEGNFHQALVIHAEMV-RNGVSPS-VVTYTALINSMCKARNLNRAMEFFDQMRIRGL 181

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFN------------------------ 321
            P  + ++  +D   +      A ++ + M   GF+                        
Sbjct: 182 RPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALG 241

Query: 322 ---------LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 372
                    L P+++ Y+ +I   C   ++D  F+   +MV  G  PD++TY+ + + L 
Sbjct: 242 VVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLC 301

Query: 373 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 432
           + +R+ E      EM+     P      T I       +   A+ + + ++  G LP   
Sbjct: 302 EMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAV 361

Query: 433 SANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
           + + L+ GL    R  + +R   +++    +  +VT   L
Sbjct: 362 TYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTL 401



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/445 (20%), Positives = 194/445 (43%), Gaps = 57/445 (12%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G + +  ++N++++ L + G  ++ W  +  M   G      T+ ++ + YC  G + +
Sbjct: 74  KGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQ 133

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILL 224
           A++    M  +GV   VV   +L++++C+  N  +RA+EF ++++ + + P+  ++  L+
Sbjct: 134 ALVIHAEMVRNGVSPSVVTYTALINSMCKARN-LNRAMEFFDQMRIRGLRPNERTYTTLI 192

Query: 225 EGWEKEGNVEEANKTFGEM---------------------VERFE-------------WN 250
           +G+ ++G + EA +   EM                     +ER E               
Sbjct: 193 DGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLA 252

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P+ V++Y T +    R  ++D A +  + M  +   P    +S+ +  L ++   T A  
Sbjct: 253 PD-VVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACD 311

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
           L   M+ +G  L P+   Y  +I   C   D++      D+M+  G  PD++TY+++   
Sbjct: 312 LSQEMLDMG--LPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLING 369

Query: 371 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI---------------A 415
           L K  R  E ++   ++I  E  P+ +   T I    + +   +               A
Sbjct: 370 LNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEA 429

Query: 416 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKA 475
             ++  ++E    P EA  N ++ G    G L       +EM++   + + VT+  L KA
Sbjct: 430 DRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKA 489

Query: 476 FYNES--RSMRDIFDSLERRCKTSQ 498
            + E     M ++     R C+ ++
Sbjct: 490 LFKEGMNEEMSEVIGDTLRSCRLNE 514



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 101/249 (40%), Gaps = 39/249 (15%)

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           ++  V P+  ++ IL+ G+   G +++    FGEM ER    P +V+ Y T +    +  
Sbjct: 2   IRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEM-ERNGCLP-NVVTYNTLIDAYCKMG 59

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           ++DEA   L+ M                        S+  +Q             PNLI 
Sbjct: 60  RIDEAFGLLKSM------------------------SSKGMQ-------------PNLIS 82

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           YN +I  LC    +   +   ++M + G  PD +TYN +     K    H+      EM+
Sbjct: 83  YNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMV 142

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
           +N   P+ +     I  +  A     A+E ++ +   G+ P E +   L+ G    G L+
Sbjct: 143 RNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLN 202

Query: 449 DVRRFAEEM 457
           +  R   EM
Sbjct: 203 EAYRILNEM 211



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 70/174 (40%), Gaps = 6/174 (3%)

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           PN+  YN +I   C+  ++      F +M  +G  P+ +TYN + +   K  R+ E    
Sbjct: 8   PNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGL 67

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
              M     QP  ++    I  L      + A EI   +   G  P E + N LL G   
Sbjct: 68  LKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCK 127

Query: 444 LGRLSDVRRFAEEMLNR----RILIYEVTMHKLKKAFYNESRSMRDIFDSLERR 493
            G          EM+       ++ Y   ++ + KA  N +R+M + FD +  R
Sbjct: 128 EGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKA-RNLNRAM-EFFDQMRIR 179


>gi|147782978|emb|CAN70810.1| hypothetical protein VITISV_034914 [Vitis vinifera]
          Length = 708

 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 116/455 (25%), Positives = 201/455 (44%), Gaps = 30/455 (6%)

Query: 67  DIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLS--PYAWNLMVDVLG 124
           D+E AL   G+  T DLV E+L   +     A  FF WAG     S  P A+N M+D+L 
Sbjct: 225 DMEKALDLVGVELTTDLVIEILGKIHFEEKMAFRFFMWAGHQDCYSHEPRAYNEMIDILS 284

Query: 125 ----KNGRFEQMWNAVRVMKEDGVLSLPT--FASIFDSYCGAGKYDEAVMSFDVMSMHGV 178
               K  +F  + + +  MK +   S+P      I   Y    K+   +  F       V
Sbjct: 285 STKYKVKQFRIVCDMLDYMKRNDKKSVPVEVLLMILRKY--TEKHLAHLHKFAKKKKIRV 342

Query: 179 --EQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA 236
             + ++ A+N LL A+C+  +    A     RVK  V PD +++ IL  GW +  N    
Sbjct: 343 KTQPEINALNLLLDALCKC-SLVEDAQAMFRRVKNKVKPDANTYNILFFGWCRVRNPSRG 401

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA---LKFLRVMKGENCFPTLKFFS 293
            +   EM+E     P+    Y T + +  +   V EA    +F+R        PT K ++
Sbjct: 402 MRVLEEMIE-MGHTPDS-FTYNTAIDSFCKAGMVTEATELFEFMRTKGSTMSSPTAKTYA 459

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +  LV+ + +    +L   M+  G  ++P++  Y  VI  +C    V+  ++F ++M 
Sbjct: 460 IMILALVQSDRTEECFKLIKDMINSG--VLPDVSTYKQVIEGMCLAGKVEEAYKFLEEMG 517

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G  PD +TYN   + L +NK+  E    +  MI+    P+       I+M  +  EP+
Sbjct: 518 NKGYRPDIVTYNCFLDVLCENKKSEEALGLYGRMIEAGCVPSVHTFNMLISMFFEIGEPD 577

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI---------LI 464
            A E W+ + + G      +   ++ GL N  ++ D     +E++N+ I          +
Sbjct: 578 GAFETWHEMDKRGCARDTDTYCVMIEGLFNCNKMEDACFLLDEVINKGIKLPYRKFDCFL 637

Query: 465 YEVTMHKLKKAFYNESRSMRDIFD-SLERRCKTSQ 498
            +++M    +A +  S  MR  ++ ++ RR   +Q
Sbjct: 638 MQLSMIGDLQAIHKLSEHMRKFYNPAMARRFALNQ 672


>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 556

 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 145/330 (43%), Gaps = 7/330 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N ++  L   GR +     +  M   G V  + T+  + ++ C    Y +AV   D 
Sbjct: 153 YTYNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDE 212

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEG 231
           M   G   D+V  N +++ IC QE +   A+EFL  +     +P+  S+ I+L+G     
Sbjct: 213 MRDKGCAPDIVTYNVVVNGIC-QEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAE 271

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
             E+A K   EM  +    P +V+ +   +  L R   V+ A++ L  +    C P    
Sbjct: 272 RWEDAEKLMAEMSRK--GRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLS 329

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           ++  L    K      A+   ++MV  G    P+++ YN ++  LC   +VD       Q
Sbjct: 330 YNPILHAFCKQKKMDRAMAFVELMVSSG--CYPDIVSYNTLLTALCRGGEVDAAVELLHQ 387

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           +   G  P  ++YN + + L K  +  E  +  +EM+    QP  +  +T  + L     
Sbjct: 388 LKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGR 447

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGL 441
            E AI+ +  + + GI P     N +L+GL
Sbjct: 448 IEEAIKAFCKVQDMGIRPNTVLYNAILLGL 477



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 154/352 (43%), Gaps = 13/352 (3%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN- 207
           ++ ++   YC  G+ D A      M M   E D    N+L+  +C +  +T  AL  L+ 
Sbjct: 122 SYNAMVAGYCVTGQLDNARRLVAAMPM---EPDTYTYNTLIRGLCGR-GRTDNALAVLDD 177

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            +++   PD  ++ ILLE   K    ++A K   EM  R +     ++ Y   +  + + 
Sbjct: 178 MLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEM--RDKGCAPDIVTYNVVVNGICQE 235

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
            +VD+A++FL+ +    C P    ++  L  L        A +L   M   G    PN++
Sbjct: 236 GRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRP--PNVV 293

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            +N +I  LC    V+      DQ+  +G  P+SL+YN I     K K++     F   M
Sbjct: 294 TFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELM 353

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
           + +   P  ++  T +T L    E + A+E+ + + + G  P+  S N ++ GL   G+ 
Sbjct: 354 VSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKT 413

Query: 448 SDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQM 499
            +      EM+ + +    +T   +      E R    I ++++  CK   M
Sbjct: 414 EEALELLNEMVTKGLQPDIITYSTISSGLCREGR----IEEAIKAFCKVQDM 461



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 139/289 (48%), Gaps = 23/289 (7%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFAS---------IFDSYCGAGKYDEA 166
           +N++V+ + + GR +   +A+  +K     SLP++           +    C A ++++A
Sbjct: 225 YNVVVNGICQEGRVD---DAMEFLK-----SLPSYGCEPNTVSYNIVLKGLCTAERWEDA 276

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLE 225
                 MS  G   +VV  N L+S +CR+      A+E L+++ K    P+  S+  +L 
Sbjct: 277 EKLMAEMSRKGRPPNVVTFNMLISFLCRR-GLVEPAMEILDQIPKYGCTPNSLSYNPILH 335

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
            + K+  ++ A   F E++      P+ +++Y T L  L RG +VD A++ L  +K + C
Sbjct: 336 AFCKQKKMDRA-MAFVELMVSSGCYPD-IVSYNTLLTALCRGGEVDAAVELLHQLKDKGC 393

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P L  ++  +D L K   +  A++L + MV  G  L P++I Y+ +   LC    ++  
Sbjct: 394 TPVLISYNTVIDGLTKAGKTEEALELLNEMVTKG--LQPDIITYSTISSGLCREGRIEEA 451

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
            + F ++   G  P+++ YN I   L K +  H     F  M+ N   P
Sbjct: 452 IKAFCKVQDMGIRPNTVLYNAILLGLCKRRATHSAIDLFTYMVSNGCMP 500



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 66/133 (49%), Gaps = 1/133 (0%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++N ++D L K G+ E+    +  M   G+   + T+++I    C  G+ +EA+ +F  +
Sbjct: 399 SYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCKV 458

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G+  + V  N++L  +C++    S    F   V     P+  ++ IL+EG   EG V
Sbjct: 459 QDMGIRPNTVLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPNESTYTILIEGLAYEGLV 518

Query: 234 EEANKTFGEMVER 246
           +EA +   E+  R
Sbjct: 519 KEAREMMAELCSR 531



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 46/211 (21%), Positives = 85/211 (40%), Gaps = 19/211 (9%)

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P    A    L  L+R   ++EA++ +  M G    P+      AL  + KL  S    +
Sbjct: 53  PHRSAASNDRLRVLVRRGDLEEAIRLVESMAGLE--PSAAGPCAAL--IKKLCASGRTAE 108

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
              ++     +  P+++ YNA++   C    +DN  R    M      PD+ TYN +   
Sbjct: 109 ARRVLA----SCEPDVMSYNAMVAGYCVTGQLDNARRLVAAMPME---PDTYTYNTLIRG 161

Query: 371 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP----EIAIEIWNYILENG 426
           L    R         +M++    P         T+LL+A       + A+++ + + + G
Sbjct: 162 LCGRGRTDNALAVLDDMLRRGCVPD----VVTYTILLEATCKRSGYKQAVKLLDEMRDKG 217

Query: 427 ILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
             P   + N ++ G+   GR+ D   F + +
Sbjct: 218 CAPDIVTYNVVVNGICQEGRVDDAMEFLKSL 248


>gi|357145431|ref|XP_003573640.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80880,
           mitochondrial-like [Brachypodium distachyon]
          Length = 523

 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 154/344 (44%), Gaps = 10/344 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           AW+L +   GK GRF+  W AVR M   GVL+      + + Y  A + ++A+ +FDVM 
Sbjct: 143 AWHLAIWAAGKAGRFDLAWAAVRRMLHRGVLTRRAMIIVMERYAAASELEKALKTFDVME 202

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW-EKEGNV 233
              V+ D     SLL A+C+ +N    A E L   KK      + F I+L+GW     +V
Sbjct: 203 KFKVQADQAVFYSLLRALCKSKN-IEDAEELLLMRKKFFPLTAEGFNIILDGWCNIIIDV 261

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            EA + + EM   +   P+   +Y   +    +   + + L+    MK     P +  ++
Sbjct: 262 AEAKRVWKEM-SSYCITPDGT-SYTLMVSCFSKVGNLFDTLRVYDEMKKRGWTPGIGVYN 319

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
           + + +L + N    A +++  ++  G  L  N+  YN++I  LC +  +D        M+
Sbjct: 320 SLVYVLTRENCMKDAKKIFSKIIDEGLQL--NVETYNSMIIPLCESCKLDEARIMMGDMI 377

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G  P  LTY+      +K + V E  +   +M +N   P        I   + A+E  
Sbjct: 378 MKGIVPTILTYH----AFLKQEGVDETLQLLRKMKENGCGPNSDTFLMLIDKFIQANESG 433

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
            A+ +WN ++   I P  +    ++ GL   G +     + +EM
Sbjct: 434 NALRVWNEMIRYDISPAYSHYMAVIQGLVKHGCIPRALEYYDEM 477



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/263 (20%), Positives = 112/263 (42%), Gaps = 15/263 (5%)

Query: 101 FFRWAGRGQRLSPYAW-NLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCG 159
           FF     G  +    W N+++DV      +++M  +   +  DG     ++  +   +  
Sbjct: 239 FFPLTAEGFNIILDGWCNIIIDVAEAKRVWKEM--SSYCITPDGT----SYTLMVSCFSK 292

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
            G   + +  +D M   G    +   NSL+  + R+         F   + + +  + ++
Sbjct: 293 VGNLFDTLRVYDEMKKRGWTPGIGVYNSLVYVLTRENCMKDAKKIFSKIIDEGLQLNVET 352

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           +  ++    +   ++EA    G+M+   +     +L Y  FL    + + VDE L+ LR 
Sbjct: 353 YNSMIIPLCESCKLDEARIMMGDMI--MKGIVPTILTYHAFL----KQEGVDETLQLLRK 406

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
           MK   C P    F   +D  ++ N+S +A+++W+ M  I +++ P    Y AVI  L  +
Sbjct: 407 MKENGCGPNSDTFLMLIDKFIQANESGNALRVWNEM--IRYDISPAYSHYMAVIQGLVKH 464

Query: 340 DDVDNVFRFFDQMVFHGAFPDSL 362
             +     ++D+M   G   D +
Sbjct: 465 GCIPRALEYYDEMKAKGFASDPI 487


>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
          Length = 694

 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 159/351 (45%), Gaps = 8/351 (2%)

Query: 107 RGQRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL--SLPTFASIFDSYCGAGK 162
           RG   +P A  +N +V    + G  +     V +M+E+G    +L TF S+ +  C AG+
Sbjct: 179 RGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGR 238

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
            + A   FD M   G+  DVV+ N+LLS  C+          F    ++ + PD  +F  
Sbjct: 239 MEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTS 298

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+    K GN+E+A     +M ER     E  + +   +    +   +D+AL  +  M+ 
Sbjct: 299 LIHATCKAGNLEQAVALVAQMRERGLRMNE--VTFTALIDGFCKKGFLDDALLAVEEMRK 356

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
               P++  ++  ++   KL     A +L   M      + P+++ Y+ +I   C   ++
Sbjct: 357 CGIQPSVVCYNALINGYCKLGRMDLARELIREMEAK--RVKPDVVTYSTIISGYCKVGNL 414

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
           D+ F+   +M+  G  PD++TY+ +   L + KR+++  + F  M++   QP      T 
Sbjct: 415 DSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTL 474

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 453
           I         E A+ + + ++  G+LP   + + L+ GL    R  +  R 
Sbjct: 475 IDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRL 525



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 132/300 (44%), Gaps = 44/300 (14%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCG 159
           F     RG       +  ++    K G  EQ    V  M+E G+ ++  TF ++ D +C 
Sbjct: 281 FSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCK 340

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGD 218
            G  D+A+++ + M   G++  VV  N+L++  C+   +   A E +  ++ K V PD  
Sbjct: 341 KGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKL-GRMDLARELIREMEAKRVKPDVV 399

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           +++ ++ G+ K GN++ A +   +M+++       VL       +LIRG   ++      
Sbjct: 400 TYSTIISGYCKVGNLDSAFQLNQKMLKK------GVLPDAITYSSLIRGLCEEK------ 447

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
                                 +LND   A +L++ M+ +G  + P+   Y  +I   C 
Sbjct: 448 ----------------------RLND---ACELFENMLQLG--VQPDEFTYTTLIDGHCK 480

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
             +V+      D+M+  G  PD +TY+++   L K+ R  E  +   ++   +  P P N
Sbjct: 481 EGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHED--PVPDN 538



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 88/205 (42%), Gaps = 1/205 (0%)

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
           +V  Y   +  L    +++EA+  +  M+G  C P    ++  +    +  +   A ++ 
Sbjct: 151 NVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVV 210

Query: 313 DIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 372
            +M   G N  PNL+ +N+++  LC    ++   + FD+MV  G  PD ++YN +     
Sbjct: 211 SLMREEG-NAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYC 269

Query: 373 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 432
           K   +HE    F EM +    P  +   + I     A   E A+ +   + E G+   E 
Sbjct: 270 KVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEV 329

Query: 433 SANELLVGLRNLGRLSDVRRFAEEM 457
           +   L+ G    G L D     EEM
Sbjct: 330 TFTALIDGFCKKGFLDDALLAVEEM 354


>gi|255551140|ref|XP_002516618.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544438|gb|EEF45959.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 577

 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 109/491 (22%), Positives = 207/491 (42%), Gaps = 35/491 (7%)

Query: 24  TTSPTSHNPHRPTR--PRFPTHLDAP-----YISSSARIICEILAHASSDDIESALACTG 76
           ++SP S   HR  +  P  P  L +P     Y  S    +C +L+  +   +E+AL  TG
Sbjct: 25  SSSPDSPRHHRRPKWTPPLPEKLPSPTANPNYSHSDFSTLCNLLSDPNLKPLETALDQTG 84

Query: 77  IIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWN 134
           I P   L++ V      SP      F WA +      S   +N +++ LGK   F+  W 
Sbjct: 85  IKPETSLLNAVFDHFNSSPKLLHSLFVWADKQPEFESSTTLFNSVINALGKMKEFDSAW- 143

Query: 135 AVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVA-------VNS 187
              V+   G++S  TFA +   Y  AG    A+ +F+    + +  D +        +  
Sbjct: 144 -CLVLDRTGLVSSDTFAILIRRYTRAGMPQSAIRTFE----YAISLDFICDYNCDALLEI 198

Query: 188 LLSAICRQENQTSRALEFLNRVKKIVD---PDGDSFAILLEGWEKEGNVEEANKTFGEMV 244
           LL ++C+ E     A E+ +  K++     P    + I+L GW +   ++ A + + EM 
Sbjct: 199 LLDSLCK-EGHVRVAKEYFDSRKQLDSCWIPHVRIYNIMLNGWFRSRKLKHAERLWLEM- 256

Query: 245 ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 304
           ++   +P  V+ Y T +    R ++V+ A++ + VM+ E   P    ++  +D L +   
Sbjct: 257 KKNNVSPS-VVTYGTLVEGYCRMRRVERAIELVDVMRKEGIEPNALVYNPIIDALAEEGR 315

Query: 305 STHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTY 364
                 + +  +       P +  YN+++   C   D     +    M+  G  P   TY
Sbjct: 316 FKEVSGMMEYFLQSESG--PTISTYNSLVKGYCKAKDPVGASKVLKMMISRGFVPTPTTY 373

Query: 365 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 424
           N  F    K   + E    + +MI++ + P  L     + ML + +  ++A++I   +  
Sbjct: 374 NYFFRHFSKFGMIEEGMNLYTKMIESGYTPDRLTFHLLLKMLCEEERLDLAVQISKEMRS 433

Query: 425 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL-----KKAFYNE 479
            G     A++  L+     + R  +     E+M+ + I+   +T  +L     K+     
Sbjct: 434 RGCDMDLATSTMLIHLFCRMHRFEEAFMEFEDMIQKGIVPQYLTFQRLNDELRKRGMVER 493

Query: 480 SRSMRDIFDSL 490
           +R + D+  S+
Sbjct: 494 ARKLSDMMSSV 504


>gi|449455320|ref|XP_004145401.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
 gi|449471531|ref|XP_004153336.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 670

 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 159/357 (44%), Gaps = 12/357 (3%)

Query: 137 RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS--MHGVEQDVVAVNSLLSAICR 194
           R+ +E  VL+   F  IF +   A    EAV  F  M+  +H  +Q V + NS+L+ I  
Sbjct: 114 RMKREGRVLTETIFILIFKACGKAHLPGEAVNFFHRMANDLH-CKQTVKSFNSVLNVII- 171

Query: 195 QENQTSRALEFLNRV----KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
           QE   S A +F   V     K   P+  ++ ++++   K G ++ A  TF EM  +   N
Sbjct: 172 QEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLK-NCN 230

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P+ V  Y T +  L + ++VDEA+  L  M+ E C P    F+  +D L K  D + A +
Sbjct: 231 PD-VFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAK 289

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
           L D M   G   +PN + YN +I  LC    +D      ++MV     P+ +TY  I   
Sbjct: 290 LVDNMFLKG--CVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIING 347

Query: 371 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 430
           L+K +R  +       M +   +      ++ I+ L    + E A+ +W  + E G  P 
Sbjct: 348 LVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPN 407

Query: 431 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIF 487
                  + GL    +  +     +EML++  L    T   L K F+ +  S + I 
Sbjct: 408 VVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAIL 464



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 77/357 (21%), Positives = 161/357 (45%), Gaps = 5/357 (1%)

Query: 102 FRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMK-EDGVLSLPTFASIFDSYCGA 160
           F    +G + +   +NL++  L K G+ ++  +  R M  ++    + T++++ +  C  
Sbjct: 187 FGANSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKE 246

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSF 220
            + DEAV   D M   G   + V  N L+ A+ +  + +  A    N   K   P+  ++
Sbjct: 247 RRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTY 306

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
             L+ G   +G +++A     +MV   +  P  V  Y T +  L++ ++ ++ +  L  M
Sbjct: 307 NTLIHGLCLKGKLDKALSLLEKMVSS-KCVPNQV-TYGTIINGLVKQRRAEDGVHILMSM 364

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
           +          +S+ +  L K   S +AV+LW  M   G    PN+++Y A I  LC ++
Sbjct: 365 EERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCK--PNVVVYGAFIDGLCRDE 422

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
             D       +M+  G  P++ TY+ + +   K     +    + EM+  + +   + C+
Sbjct: 423 KPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCS 482

Query: 401 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
             +  L ++     A+ +W ++L  G+ P   + + ++ GL ++G +    +   EM
Sbjct: 483 VLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEM 539



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 153/353 (43%), Gaps = 8/353 (2%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSF 170
           +P  +N+++D L KNG   +    V  M   G V +  T+ ++    C  GK D+A+   
Sbjct: 267 NPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLL 326

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
           + M       + V   ++++ + +Q          ++  ++    +   ++ L+ G  KE
Sbjct: 327 EKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKE 386

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           G  E A + + EM E+      +V+ Y  F+  L R ++ DEA   L+ M  +   P   
Sbjct: 387 GKSENAVRLWKEMAEK--GCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAF 444

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
            +S+ +    K  DS  A+ +W  M+    ++  N++  + ++  LC +  +      + 
Sbjct: 445 TYSSLMKGFFKKGDSQKAILVWKEMMSQ--DMRHNVVCCSVLLNGLCESGRLREALTVWT 502

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP--LNCATAITMLLD 408
            M+  G  PD + Y+ + + L     V +  K F+EM   E +  P  +        L  
Sbjct: 503 HMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCR 562

Query: 409 ADEPEIAIEIWNYILENGILPLEASANELLVGLR-NLGRLSDVRRFAEEMLNR 460
            D    AI++ N +L+ G  P   + N  L  LR  +    D R F +E++ R
Sbjct: 563 QDNLTRAIDLLNSMLDEGCDPDSLTCNIFLETLRERINPPQDGRLFLDELVVR 615



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/347 (22%), Positives = 142/347 (40%), Gaps = 19/347 (5%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           YA+   + V G N +  Q              +L T+  I  + C  G+ D AV +F  M
Sbjct: 178 YAFKFYLHVFGANSKGFQP-------------NLLTYNLIIKALCKLGQIDRAVDTFREM 224

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
            +     DV   ++L++ +C+ E +   A+  L+ ++ +   P+  +F +L++   K G+
Sbjct: 225 PLKNCNPDVFTYSTLMNGLCK-ERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGD 283

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +  A K    M  +    P  V  Y T +  L    ++D+AL  L  M    C P    +
Sbjct: 284 LSRAAKLVDNMFLK-GCVPNEV-TYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTY 341

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
              ++ LVK   +   V +   M   G     N  +Y+++I  L      +N  R + +M
Sbjct: 342 GTIINGLVKQRRAEDGVHILMSMEERGQK--ANEYIYSSLISGLFKEGKSENAVRLWKEM 399

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
              G  P+ + Y    + L ++++  E E    EM+   + P     ++ +       + 
Sbjct: 400 AEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDS 459

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
           + AI +W  ++   +       + LL GL   GRL +       ML 
Sbjct: 460 QKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLG 506



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 111/265 (41%), Gaps = 36/265 (13%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           RGQ+ + Y ++ ++  L K G+ E   NAVR+ KE                         
Sbjct: 367 RGQKANEYIYSSLISGLFKEGKSE---NAVRLWKE------------------------- 398

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
                 M+  G + +VV   + +  +CR E            + K   P+  +++ L++G
Sbjct: 399 ------MAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKG 452

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
           + K+G+ ++A   + EM+ +   +  +V+     L  L    ++ EAL     M GE   
Sbjct: 453 FFKKGDSQKAILVWKEMMSQDMRH--NVVCCSVLLNGLCESGRLREALTVWTHMLGEGLK 510

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346
           P +  +S+ +  L  +      ++L+  M        P+++ YN +   LC  D++    
Sbjct: 511 PDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAI 570

Query: 347 RFFDQMVFHGAFPDSLTYNMIFECL 371
              + M+  G  PDSLT N+  E L
Sbjct: 571 DLLNSMLDEGCDPDSLTCNIFLETL 595



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 62/292 (21%), Positives = 109/292 (37%), Gaps = 11/292 (3%)

Query: 199 TSRALEFLNRVKKIVDPDGDS-----FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH 253
           TSR   F+++V   +  +G       F ++ +   K     EA   F  M        + 
Sbjct: 101 TSREFHFIHQVLDRMKREGRVLTETIFILIFKACGKAHLPGEAVNFFHRMANDLHCK-QT 159

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCF---PTLKFFSNALDILVKLNDSTHAVQ 310
           V ++ + L  +I+      A KF   + G N     P L  ++  +  L KL     AV 
Sbjct: 160 VKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLGQIDRAVD 219

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
            +  M     N  P++  Y+ ++  LC    VD      D+M   G  P+ +T+N++ + 
Sbjct: 220 TFREMPLKNCN--PDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDA 277

Query: 371 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 430
           L KN  +    K    M      P  +   T I  L    + + A+ +   ++ +  +P 
Sbjct: 278 LSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPN 337

Query: 431 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 482
           + +   ++ GL    R  D       M  R     E     L    + E +S
Sbjct: 338 QVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKS 389


>gi|449502431|ref|XP_004161638.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 646

 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 159/357 (44%), Gaps = 12/357 (3%)

Query: 137 RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS--MHGVEQDVVAVNSLLSAICR 194
           R+ +E  VL+   F  IF +   A    EAV  F  M+  +H  +Q V + NS+L+ I  
Sbjct: 90  RMKREGRVLTETIFILIFKACGKAHLPGEAVNFFHRMANDLH-CKQTVKSFNSVLNVII- 147

Query: 195 QENQTSRALEFLNRV----KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
           QE   S A +F   V     K   P+  ++ ++++   K G ++ A  TF EM  +   N
Sbjct: 148 QEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLK-NCN 206

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P+ V  Y T +  L + ++VDEA+  L  M+ E C P    F+  +D L K  D + A +
Sbjct: 207 PD-VFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAK 265

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
           L D M   G   +PN + YN +I  LC    +D      ++MV     P+ +TY  I   
Sbjct: 266 LVDNMFLKG--CVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIING 323

Query: 371 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 430
           L+K +R  +       M +   +      ++ I+ L    + E A+ +W  + E G  P 
Sbjct: 324 LVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPN 383

Query: 431 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIF 487
                  + GL    +  +     +EML++  L    T   L K F+ +  S + I 
Sbjct: 384 VVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAIL 440



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 77/357 (21%), Positives = 161/357 (45%), Gaps = 5/357 (1%)

Query: 102 FRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMK-EDGVLSLPTFASIFDSYCGA 160
           F    +G + +   +NL++  L K G+ ++  +  R M  ++    + T++++ +  C  
Sbjct: 163 FGANSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKE 222

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSF 220
            + DEAV   D M   G   + V  N L+ A+ +  + +  A    N   K   P+  ++
Sbjct: 223 RRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTY 282

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
             L+ G   +G +++A     +MV   +  P  V  Y T +  L++ ++ ++ +  L  M
Sbjct: 283 NTLIHGLCLKGKLDKALSLLEKMVSS-KCVPNQV-TYGTIINGLVKQRRAEDGVHILMSM 340

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
           +          +S+ +  L K   S +AV+LW  M   G    PN+++Y A I  LC ++
Sbjct: 341 EERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCK--PNVVVYGAFIDGLCRDE 398

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
             D       +M+  G  P++ TY+ + +   K     +    + EM+  + +   + C+
Sbjct: 399 KPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCS 458

Query: 401 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
             +  L ++     A+ +W ++L  G+ P   + + ++ GL ++G +    +   EM
Sbjct: 459 VLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEM 515



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 153/353 (43%), Gaps = 8/353 (2%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSF 170
           +P  +N+++D L KNG   +    V  M   G V +  T+ ++    C  GK D+A+   
Sbjct: 243 NPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLL 302

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
           + M       + V   ++++ + +Q          ++  ++    +   ++ L+ G  KE
Sbjct: 303 EKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKE 362

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           G  E A + + EM E+      +V+ Y  F+  L R ++ DEA   L+ M  +   P   
Sbjct: 363 GKSENAVRLWKEMAEK--GCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAF 420

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
            +S+ +    K  DS  A+ +W  M+    ++  N++  + ++  LC +  +      + 
Sbjct: 421 TYSSLMKGFFKKGDSQKAILVWKEMMSQ--DMRHNVVCCSVLLNGLCESGRLREALTVWT 478

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP--LNCATAITMLLD 408
            M+  G  PD + Y+ + + L     V +  K F+EM   E +  P  +        L  
Sbjct: 479 HMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCR 538

Query: 409 ADEPEIAIEIWNYILENGILPLEASANELLVGLR-NLGRLSDVRRFAEEMLNR 460
            D    AI++ N +L+ G  P   + N  L  LR  +    D R F +E++ R
Sbjct: 539 QDNLTRAIDLLNSMLDEGCDPDSLTCNIFLETLRERINPPQDGRLFLDELVVR 591



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/347 (22%), Positives = 142/347 (40%), Gaps = 19/347 (5%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           YA+   + V G N +  Q              +L T+  I  + C  G+ D AV +F  M
Sbjct: 154 YAFKFYLHVFGANSKGFQP-------------NLLTYNLIIKALCKLGQIDRAVDTFREM 200

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
            +     DV   ++L++ +C+ E +   A+  L+ ++ +   P+  +F +L++   K G+
Sbjct: 201 PLKNCNPDVFTYSTLMNGLCK-ERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGD 259

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +  A K    M  +    P  V  Y T +  L    ++D+AL  L  M    C P    +
Sbjct: 260 LSRAAKLVDNMFLK-GCVPNEV-TYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTY 317

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
              ++ LVK   +   V +   M   G     N  +Y+++I  L      +N  R + +M
Sbjct: 318 GTIINGLVKQRRAEDGVHILMSMEERGQK--ANEYIYSSLISGLFKEGKSENAVRLWKEM 375

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
              G  P+ + Y    + L ++++  E E    EM+   + P     ++ +       + 
Sbjct: 376 AEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDS 435

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
           + AI +W  ++   +       + LL GL   GRL +       ML 
Sbjct: 436 QKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLG 482



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 111/265 (41%), Gaps = 36/265 (13%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           RGQ+ + Y ++ ++  L K G+ E   NAVR+ KE                         
Sbjct: 343 RGQKANEYIYSSLISGLFKEGKSE---NAVRLWKE------------------------- 374

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
                 M+  G + +VV   + +  +CR E            + K   P+  +++ L++G
Sbjct: 375 ------MAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKG 428

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
           + K+G+ ++A   + EM+ +   +  +V+     L  L    ++ EAL     M GE   
Sbjct: 429 FFKKGDSQKAILVWKEMMSQDMRH--NVVCCSVLLNGLCESGRLREALTVWTHMLGEGLK 486

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346
           P +  +S+ +  L  +      ++L+  M        P+++ YN +   LC  D++    
Sbjct: 487 PDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAI 546

Query: 347 RFFDQMVFHGAFPDSLTYNMIFECL 371
              + M+  G  PDSLT N+  E L
Sbjct: 547 DLLNSMLDEGCDPDSLTCNIFLETL 571



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 62/292 (21%), Positives = 109/292 (37%), Gaps = 11/292 (3%)

Query: 199 TSRALEFLNRVKKIVDPDGDS-----FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH 253
           TSR   F+++V   +  +G       F ++ +   K     EA   F  M        + 
Sbjct: 77  TSREFHFIHQVLDRMKREGRVLTETIFILIFKACGKAHLPGEAVNFFHRMANDLHCK-QT 135

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCF---PTLKFFSNALDILVKLNDSTHAVQ 310
           V ++ + L  +I+      A KF   + G N     P L  ++  +  L KL     AV 
Sbjct: 136 VKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLGQIDRAVD 195

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
            +  M     N  P++  Y+ ++  LC    VD      D+M   G  P+ +T+N++ + 
Sbjct: 196 TFREMPLKNCN--PDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDA 253

Query: 371 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 430
           L KN  +    K    M      P  +   T I  L    + + A+ +   ++ +  +P 
Sbjct: 254 LSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPN 313

Query: 431 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 482
           + +   ++ GL    R  D       M  R     E     L    + E +S
Sbjct: 314 QVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKS 365


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/395 (22%), Positives = 175/395 (44%), Gaps = 40/395 (10%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N+++      G  E        M+ +G L ++ T+ +I D+YC   K  EA     +
Sbjct: 204 YTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRL 263

Query: 173 MSMHGVEQDVVAVNSLLSAICR--QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
           M++ G+  ++++ N +++ +CR  Q  +TS  LE +++ + +  PD  +F  L+ G+   
Sbjct: 264 MALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYV--PDRVTFNTLINGYCNV 321

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           GN  +A     EMV+    +P +V+ Y T + ++ +   ++ A++FL  M+     P  +
Sbjct: 322 GNFHQALVLHAEMVKN-GLSP-NVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGR 379

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGF------------------------------ 320
            ++  +D   +      A Q+   MV  GF                              
Sbjct: 380 TYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEM 439

Query: 321 ---NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
                +P+++ Y+ +I   C N +++  F+   +MV  G  PD  TY+ + + L K +R+
Sbjct: 440 IERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRL 499

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 437
            EV   F EM+     P  +   + I       + + A+ + + +++ G  P   + N L
Sbjct: 500 GEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVL 559

Query: 438 LVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
           + G     R  + +R   ++L    +  E+T + L
Sbjct: 560 INGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTL 594



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 92/437 (21%), Positives = 199/437 (45%), Gaps = 57/437 (13%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++N++++ L + G+ ++    +  M K   V    TF ++ + YC  G + +A++    M
Sbjct: 275 SYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEM 334

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
             +G+  +VV   +L++++C+  N  +RA+EFL++++ + + P+G ++  L++G+ ++G 
Sbjct: 335 VKNGLSPNVVTYTTLINSMCKAGN-LNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGF 393

Query: 233 VEEANKTFGEMVE---------------------RFE-------------WNPEHVLAYE 258
           +++A +   EMVE                     R E             + P+ V++Y 
Sbjct: 394 LKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPD-VVSYS 452

Query: 259 TFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI 318
           T +    R +++++A +    M  +   P +  +S+ +  L K         L+  M+ +
Sbjct: 453 TIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSL 512

Query: 319 GFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVH 378
           G  L P+ + Y ++I   C   D+D   R  D+M+  G  PD +TYN++     K  R  
Sbjct: 513 G--LPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTK 570

Query: 379 EVEKFFHEMIKNEWQPTPL-------NC-----ATAITMLLDADEPEI---AIEIWNYIL 423
           E ++   +++  E  P  +       NC      +A+ ++       +   A  +   +L
Sbjct: 571 EAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESML 630

Query: 424 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR-- 481
           + G    E   N ++ G   +G +       +EML+     + VT+  L K+ Y+E +  
Sbjct: 631 QKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAKSLYHEGKEV 690

Query: 482 SMRDIFDSLERRCKTSQ 498
            +  + D   + C+ ++
Sbjct: 691 ELNQLLDYTLKSCRITE 707



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 136/299 (45%), Gaps = 7/299 (2%)

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE--FLNRVKKIVDPDGDSFA 221
           ++A+   ++   +G    V++ N++L A+ R + Q+ +  E  F   V+  V P+  ++ 
Sbjct: 149 NKALSIVNLAKSYGFMPGVLSYNAILDAVIRTK-QSVKIAEGIFKEMVESGVSPNVYTYN 207

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           IL+ G+   GN+E     FGEM ER    P +V+ Y T +    + +++ EA K LR+M 
Sbjct: 208 ILIRGFCTAGNLEMGLFFFGEM-ERNGCLP-NVVTYNTIIDAYCKLRKIGEAFKLLRLMA 265

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
            +   P L  ++  ++ L +        ++ + M    +  +P+ + +N +I   CN  +
Sbjct: 266 LKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRY--VPDRVTFNTLINGYCNVGN 323

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
                    +MV +G  P+ +TY  +   + K   ++   +F  +M      P      T
Sbjct: 324 FHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTT 383

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
            I         + A +I   ++ENG  P   + N L+ G   LGR+ D     +EM+ R
Sbjct: 384 LIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIER 442


>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
 gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
          Length = 717

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 159/351 (45%), Gaps = 8/351 (2%)

Query: 107 RGQRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL--SLPTFASIFDSYCGAGK 162
           RG   +P A  +N +V    + G  +     V +M+E+G    +L TF S+ +  C AG+
Sbjct: 179 RGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGR 238

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
            + A   FD M   G+  DVV+ N+LLS  C+          F    ++ + PD  +F  
Sbjct: 239 MEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTS 298

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+    K GN+E+A     +M ER     E  + +   +    +   +D+AL  +  M+ 
Sbjct: 299 LIHATCKAGNLEQAVALVAQMRERGLRMNE--VTFTALIDGFCKKGFLDDALLAVEEMRK 356

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
               P++  ++  ++   KL     A +L   M      + P+++ Y+ +I   C   ++
Sbjct: 357 CGIQPSVVCYNALINGYCKLGRMDLARELIREMEAK--RVKPDVVTYSTIISGYCKVGNL 414

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
           D+ F+   +M+  G  PD++TY+ +   L + KR+++  + F  M++   QP      T 
Sbjct: 415 DSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTL 474

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 453
           I         E A+ + + ++  G+LP   + + L+ GL    R  +  R 
Sbjct: 475 IDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRL 525



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 128/282 (45%), Gaps = 44/282 (15%)

Query: 119 MVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           ++    K G  EQ    V  M+E G+ ++  TF ++ D +C  G  D+A+++ + M   G
Sbjct: 299 LIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCG 358

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEA 236
           ++  VV  N+L++  C+   +   A E +  ++ K V PD  +++ ++ G+ K GN++ A
Sbjct: 359 IQPSVVCYNALINGYCKL-GRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSA 417

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
            +   +M+++       VL       +LIRG   ++                        
Sbjct: 418 FQLNQKMLKK------GVLPDAITYSSLIRGLCEEK------------------------ 447

Query: 297 DILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG 356
               +LND   A +L++ M+ +G  + P+   Y  +I   C   +V+      D+M+  G
Sbjct: 448 ----RLND---ACELFENMLQLG--VQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKG 498

Query: 357 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
             PD +TY+++   L K+ R  E  +   ++   +  P P N
Sbjct: 499 VLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHED--PVPDN 538



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 88/205 (42%), Gaps = 1/205 (0%)

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
           +V  Y   +  L    +++EA+  +  M+G  C P    ++  +    +  +   A ++ 
Sbjct: 151 NVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVV 210

Query: 313 DIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 372
            +M   G N  PNL+ +N+++  LC    ++   + FD+MV  G  PD ++YN +     
Sbjct: 211 SLMREEG-NAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYC 269

Query: 373 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 432
           K   +HE    F EM +    P  +   + I     A   E A+ +   + E G+   E 
Sbjct: 270 KVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEV 329

Query: 433 SANELLVGLRNLGRLSDVRRFAEEM 457
           +   L+ G    G L D     EEM
Sbjct: 330 TFTALIDGFCKKGFLDDALLAVEEM 354


>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
 gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
          Length = 747

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 95/443 (21%), Positives = 192/443 (43%), Gaps = 69/443 (15%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++N++++ L + GR +++   +  M + G  L   T+ ++   YC  G + +A++    M
Sbjct: 277 SYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEM 336

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
             HG+   V+   SL+ ++C+  N  +RA EFL++++ + + P+  ++  L++G+ ++G 
Sbjct: 337 LRHGLSPSVITYTSLIHSMCKAGNM-NRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGY 395

Query: 233 VEEANKTFGEMVERFEWNPE----------------------------------HVLAYE 258
           + EA +   EM++   ++P                                    V++Y 
Sbjct: 396 MNEAYRVLKEMIDN-GFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYS 454

Query: 259 TFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI 318
           T L    R   VDEAL+  R M  +   P    +S+ +    +   +  A  L+D M+ +
Sbjct: 455 TVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRV 514

Query: 319 GFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVH 378
           G  L P+   Y A+I   C   D+    +  ++MV  G  PD +TY+++   L K  R  
Sbjct: 515 G--LPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTR 572

Query: 379 EVEKFFHEMIKNEWQPTPLNCATAI---------------------TMLLDADEPEIAIE 417
           E ++   ++   E  P+ +   T I                      M+ +AD      +
Sbjct: 573 EAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEAD------Q 626

Query: 418 IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFY 477
           ++  +LE    P   + N ++ G    G +       +EM+    L++ VT+  L K  +
Sbjct: 627 VFESMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKEMVKSGFLLHTVTVIALVKTLH 686

Query: 478 NESR--SMRDIFDSLERRCKTSQ 498
            E +   +  +  ++ R C+ S+
Sbjct: 687 KEGKVNELNSVIANVLRSCELSE 709



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 86/392 (21%), Positives = 156/392 (39%), Gaps = 70/392 (17%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ-------ENQTSR 201
           T+  +   +C AG  D A+  FD M   G   +VV  N+L+   C+        E   S 
Sbjct: 207 TYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSM 266

Query: 202 ALEFL-----------------NRVKKI-----------VDPDGDSFAILLEGWEKEGNV 233
           AL+ L                  R+K+I              D  ++  L++G+ KEGN 
Sbjct: 267 ALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNF 326

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            +A     EM+ R   +P  V+ Y + + ++ +   ++ A +FL  M+     P  + ++
Sbjct: 327 HQALVMHAEML-RHGLSPS-VITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYT 384

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFN-------------------------------- 321
             +D   +      A ++   M+  GF+                                
Sbjct: 385 TLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEK 444

Query: 322 -LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEV 380
            L P+++ Y+ V+   C + DVD   R   +MV  G  PD++TY+ + +   + +R  E 
Sbjct: 445 GLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEA 504

Query: 381 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 440
              F EM++    P        I       + + AI++ N ++E G+LP   + + L+ G
Sbjct: 505 CDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLING 564

Query: 441 LRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
           L    R  + +R   ++     +  +VT H L
Sbjct: 565 LNKQARTREAKRLLLKLFYEESVPSDVTYHTL 596



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 100/470 (21%), Positives = 189/470 (40%), Gaps = 60/470 (12%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQ-----------------RLSPYAWNLMVDV 122
           TP+    +L  S ++    + F  WA   Q                 +L   A  L  DV
Sbjct: 47  TPEAASNLLLKSQNNQELILKFLTWANPHQFFTLRCKCITLHILTRFKLYKTAQTLAEDV 106

Query: 123 LGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFD----SYCGAGKYDEAVMSFDVMSMHGV 178
             K    E      R ++E   L   T +S+FD    SY      D+A+    +   HG 
Sbjct: 107 AAKTLDDEDASLVFRSLQETYDLCNST-SSVFDLVVKSYSRLCLIDKALSIVHLSQAHGF 165

Query: 179 EQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
              V++ N++L A  R +   S A   F   ++  V P+  ++ IL+ G+   GN++ A 
Sbjct: 166 MPGVLSYNAVLDATIRSKRNISFAENVFKEMLQSQVSPNVFTYNILIRGFCLAGNLDVAL 225

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297
           + F  M E+    P +V+ Y T +    + +++D+  + LR M  +   P L  ++  ++
Sbjct: 226 RFFDRM-EKKGCLP-NVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLEPNLISYNVVIN 283

Query: 298 -------------ILVKLNDSTHAVQ--LWDIMVG------------------IGFNLMP 324
                        +L ++N   +++    ++ ++                   +   L P
Sbjct: 284 GLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLSP 343

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           ++I Y ++I  +C   +++    F DQM   G  P+  TY  + +   +   ++E  +  
Sbjct: 344 SVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVL 403

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
            EMI N + P+ +     I     A +   AI +   + E G+ P   S + +L G    
Sbjct: 404 KEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRS 463

Query: 445 GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMR--DIFDSLER 492
             + +  R   +M+ + I    +T   L + F  + R+    D+FD + R
Sbjct: 464 YDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLR 513


>gi|218202055|gb|EEC84482.1| hypothetical protein OsI_31142 [Oryza sativa Indica Group]
          Length = 586

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 107/425 (25%), Positives = 174/425 (40%), Gaps = 14/425 (3%)

Query: 56  ICEILAHASSDDIESALACTGIIP--TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSP 113
           +C +L+       +   A  G  P  TP     VL+     P  ++ FF +AG     S 
Sbjct: 68  LCRVLSDFRGPRHDLPAALRGFAPWLTPGDAAAVLRRCRHLPLPSLRFFLFAGELPGFSH 127

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKED---GVLSLPTFASIFDSYCGAGKYDEAVMSF 170
           +  +L+V  L  +    +++  +R +  D     LS   F  +F +Y  A   ++A+ +F
Sbjct: 128 HPDSLLV--LANSLAGARLFPLLRSLLSDLPPSALSRGLFPLLFRAYSRARLPEDAIRAF 185

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
             M+  G    +   +SLL A+ R          F        D    ++ IL+ GW   
Sbjct: 186 SSMAGFGFPPTIADFHSLLFALSRN-GLVEYGERFFRESSAQFDVSAKAYTILISGWAVV 244

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM-KGENCFPTL 289
              E A   F EMVER      HV  Y   +  L RG  +  A + L  M K     P  
Sbjct: 245 KKPENARSLFDEMVERGVELDVHV--YNALIDALCRGGDITSAQEQLSNMQKSHGLVPNA 302

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
             +   L       D   A+++ D M      L PN+  YNAVI LLC+  +++  +   
Sbjct: 303 ATYGPFLHAACASKDVRAALRVLDRMHT--HALTPNVFTYNAVIRLLCDLGEINEAYNIL 360

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 409
           D++   G  PD  +YN +     K K V++  +    M K    P   +    + ML+  
Sbjct: 361 DEITTQGEKPDVWSYNTLLNAHCKLKEVNKALRLISRMDKELCPPDRHSYNMLLKMLIGV 420

Query: 410 DEPEIAIEIWNYILENGILPLEASANELLVGLRN-LGRLSDVRRFAEEMLNRRILIYEVT 468
              + AIE+W+ + + G  P  A+   ++ GL +  GR  D   +   M++  I  Y+ T
Sbjct: 421 GRFDTAIEVWDGMEKRGFHPGAATYAVMIHGLASKKGRAEDACSYFVRMVDEGIPPYQAT 480

Query: 469 MHKLK 473
              L+
Sbjct: 481 CEVLR 485


>gi|302776656|ref|XP_002971480.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
 gi|300160612|gb|EFJ27229.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
          Length = 631

 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 148/318 (46%), Gaps = 8/318 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +NL++  L K+ + E+     +  ++ GV L + T++ + D++  AG+  +A+  F  
Sbjct: 302 FTYNLLI-ALCKSKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFYN 360

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEG 231
           M   G   D V  N L+S + +Q  +   ALE L  + +K + PD  ++ I+++     G
Sbjct: 361 MQKAGCMPDTVVYNVLISCLGKQ-GKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCG 419

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
             E+A   FG M++R + +P+ V+ Y T L  L + ++ DEA      M+   C P L  
Sbjct: 420 RYEKAYSFFG-MMKRRKHSPD-VVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTT 477

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           F   +D L K      A++    +V +G    PN  +YNA+I   C +  VD  +  F  
Sbjct: 478 FGTLIDTLAKAGRMEDALEQSARLVKMGH--APNSYIYNALISGFCRSGQVDKGYELFQD 535

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M+    FPDS+TY ++     +        +   EM++    P        I  L  A +
Sbjct: 536 MIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQ 595

Query: 412 PEIAIEIWNYILENGILP 429
            E A  ++  ++  G  P
Sbjct: 596 VEDAYTLFKEMIAKGFNP 613



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 140/335 (41%), Gaps = 26/335 (7%)

Query: 59  ILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL------- 111
           ++A   S  +E AL          +V +V   SY      +D F  AGR  +        
Sbjct: 307 LIALCKSKQLEEALTLFQEAEQGGVVLDVFTYSY-----LMDAFGKAGRAAKALEVFYNM 361

Query: 112 -------SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
                      +N+++  LGK G+ ++    +  M   G++    T+  + D     G+Y
Sbjct: 362 QKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRY 421

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAI 222
           ++A   F +M       DVV  N+LL+ + ++  +T  A +  + ++     PD  +F  
Sbjct: 422 EKAYSFFGMMKRRKHSPDVVTYNTLLNGL-KKLRRTDEACDLFDEMQANKCMPDLTTFGT 480

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L++   K G +E+A +    +V+       ++  Y   +    R  QVD+  +  + M  
Sbjct: 481 LIDTLAKAGRMEDALEQSARLVKMGHAPNSYI--YNALISGFCRSGQVDKGYELFQDMIE 538

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
            +CFP    ++  +    +   ++ A++L   MV  G    P L  YN +I  L     V
Sbjct: 539 CSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHT--PALATYNVLIRSLSMAGQV 596

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
           ++ +  F +M+  G  PD  TY+ +      NK V
Sbjct: 597 EDAYTLFKEMIAKGFNPDMQTYSALPNLSTPNKSV 631



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 125/311 (40%), Gaps = 7/311 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMH-GVEQDVVAVNSLLSAICRQENQTSRALEFLN 207
           T+  + +++C AG+  E V SF  ++ H G     V  N ++    R          F +
Sbjct: 233 TYGILVNAHCRAGQMHE-VASFMELARHDGCALSAVNYNFIIQGFIRCGRLAEATQLFES 291

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            + K   PD  ++ +L+    K   +EEA   F E  +        V  Y   +    + 
Sbjct: 292 TMTKESVPDVFTYNLLI-ALCKSKQLEEALTLFQEAEQ--GGVVLDVFTYSYLMDAFGKA 348

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
            +  +AL+    M+   C P    ++  +  L K      A++L + M   G  +MP+  
Sbjct: 349 GRAAKALEVFYNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKG--IMPDCR 406

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            YN VI +L +    +  + FF  M      PD +TYN +   L K +R  E    F EM
Sbjct: 407 TYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEM 466

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
             N+  P      T I  L  A   E A+E    +++ G  P     N L+ G    G++
Sbjct: 467 QANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHAPNSYIYNALISGFCRSGQV 526

Query: 448 SDVRRFAEEML 458
                  ++M+
Sbjct: 527 DKGYELFQDMI 537



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 73/376 (19%), Positives = 148/376 (39%), Gaps = 24/376 (6%)

Query: 128 RFEQMWNAVRVMKE--DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG-VEQDVVA 184
           R EQ       M+E  D    +  + ++   YC AG  D A+  F  +   G  + + V+
Sbjct: 104 RVEQAMTLFDDMRETCDCAPDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVS 163

Query: 185 VNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244
            ++L+  +C+    T     F   +   +  D +    L+    + G + +A +    M 
Sbjct: 164 FDTLVIFLCKMSRATDALAVFQEMLGAGLKADVNVCNTLIHCTCRLGMLRQARRLLHHMT 223

Query: 245 ERFEWNPEHVLAYETFLITLI-----RGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299
                   H  A + F   ++     R  Q+ E   F+ + + + C  +   ++  +   
Sbjct: 224 A-------HACARDAFTYGILVNAHCRAGQMHEVASFMELARHDGCALSAVNYNFIIQGF 276

Query: 300 VKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFP 359
           ++      A QL++    +    +P++  YN +I L C +  ++     F +    G   
Sbjct: 277 IRCGRLAEATQLFEST--MTKESVPDVFTYNLLIAL-CKSKQLEEALTLFQEAEQGGVVL 333

Query: 360 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 419
           D  TY+ + +   K  R  +  + F+ M K    P  +     I+ L    + + A+E+ 
Sbjct: 334 DVFTYSYLMDAFGKAGRAAKALEVFYNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELL 393

Query: 420 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR----ILIYEVTMHKLKKA 475
             +   GI+P   + N ++  L + GR      F   M  R+    ++ Y   ++ LKK 
Sbjct: 394 EDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKK- 452

Query: 476 FYNESRSMRDIFDSLE 491
               +    D+FD ++
Sbjct: 453 -LRRTDEACDLFDEMQ 467


>gi|225427504|ref|XP_002263624.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
           mitochondrial-like [Vitis vinifera]
          Length = 709

 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 116/455 (25%), Positives = 201/455 (44%), Gaps = 30/455 (6%)

Query: 67  DIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLS--PYAWNLMVDVLG 124
           D+E AL   G+  T DLV E+L   +     A  FF WAG     S  P A+N M+D+L 
Sbjct: 252 DMEKALDLVGVELTTDLVIEILGKIHFEEKMAFRFFMWAGHQDCYSHEPRAYNEMIDILS 311

Query: 125 ----KNGRFEQMWNAVRVMKEDGVLSLPT--FASIFDSYCGAGKYDEAVMSFDVMSMHGV 178
               K  +F  + + +  MK +   S+P      I   Y    K+   +  F       V
Sbjct: 312 STKYKVKQFRIVCDMLDYMKRNDKKSVPVEVLLMILRKY--TEKHLAHLHKFAKKKKIRV 369

Query: 179 --EQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA 236
             + ++ A+N LL A+C+  +    A     RVK  V PD +++ IL  GW +  N    
Sbjct: 370 KTQPEINALNLLLDALCKC-SLVEDAQAMFRRVKNKVKPDANTYNILFFGWCRVRNPSRG 428

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA---LKFLRVMKGENCFPTLKFFS 293
            +   EM+E     P+    Y T + +  +   V EA    +F+R        PT K ++
Sbjct: 429 MRVLEEMIE-MGHTPDS-FTYNTAIDSFCKAGMVTEATELFEFMRTKGSTMSSPTAKTYA 486

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +  LV+ + +    +L   M+  G  ++P++  Y  VI  +C    V+  ++F ++M 
Sbjct: 487 IMILALVQSDRTEECFKLIKDMINSG--VLPDVSTYKQVIEGMCLAGKVEEAYKFLEEMG 544

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G  PD +TYN   + L +NK+  E    +  MI+    P+       I+M  +  EP+
Sbjct: 545 NKGYRPDIVTYNCFLDVLCENKKSEEALGLYGRMIEAGCVPSVHTFNMLISMFFEIGEPD 604

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI---------LI 464
            A E W+ + + G      +   ++ GL N  ++ D     +E++N+ I          +
Sbjct: 605 GAFETWHEMDKRGCARDTDTYCVMIEGLFNCNKMEDACFLLDEVVNKGIKLPYRKFDCFL 664

Query: 465 YEVTMHKLKKAFYNESRSMRDIFD-SLERRCKTSQ 498
            +++M    +A +  S  MR  ++ ++ RR   +Q
Sbjct: 665 MQLSMIGDLQAIHKLSEHMRKFYNPAMARRFALNQ 699


>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
 gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
          Length = 475

 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 89/389 (22%), Positives = 171/389 (43%), Gaps = 12/389 (3%)

Query: 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSL----PTFASIFDSYCGAGKYDEA 166
           L+  AW   +  L K+G+ EQ + A R M+E    S      T  S+    C AG+ D A
Sbjct: 9   LNNVAWTAFLGGLCKSGKIEQAFEACRTMQESLSSSQPPSSGTCHSVIQELCKAGRVDSA 68

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD---SFAIL 223
           +   + M   G   D+   + L++ +C+  ++   A EFL  + + +        S+  L
Sbjct: 69  LSLLETMIKRGYCPDMATHSMLINELCKA-DKIQEAQEFLQGMNRTISTRASSCFSYNSL 127

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           L    K   V +A   F  MV      P+ V++Y   +    +  ++  A K  + M   
Sbjct: 128 LNSLCKAKKVHQAFAIFSTMVSERSVVPD-VVSYSILIDGFCKIDELGRAEKLYKQMIDL 186

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
           NC P +  ++  L+ L++      A  +++ M+  G +  P++I Y+ +I         D
Sbjct: 187 NCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCS--PDVITYSTLIHGFSLARKHD 244

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
                F+ M+  G  P+++TYN +   L K  +  E  + F +M++    P  +   T +
Sbjct: 245 QAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLL 304

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
               +  + E A+E+++ ++  G  P   + N LL G    G+  + R+  + M++R   
Sbjct: 305 YGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECK 364

Query: 464 IYEVTMHKLKKAFYNESRSMRDIFDSLER 492
              V+ H +     ++++ + D  +  ER
Sbjct: 365 PDTVS-HNIMIDGLSKAKRLDDAVEVFER 392



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 114/257 (44%), Gaps = 4/257 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N  ++ L + GR          M   G    + T++++   +  A K+D+A   F+ M 
Sbjct: 195 YNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELFEAMI 254

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G   + V  N LL  +C++         F   V++  DPD  ++  LL G+   G +E
Sbjct: 255 SRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNVGKIE 314

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           +A + F EMV +   +P+ V+AY   L    R  +  EA +  +VM    C P     + 
Sbjct: 315 QAVEVFDEMVSK-GHDPD-VVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVSHNI 372

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
            +D L K      AV++++ M        P+L+ YN++I  LC    +    + F ++  
Sbjct: 373 MIDGLSKAKRLDDAVEVFERMEQ-DHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDR 431

Query: 355 HGAFPDSLTYNMIFECL 371
               PD   +N++ E +
Sbjct: 432 LKLSPDPHAFNVLLEAM 448



 Score = 43.1 bits (100), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 13/143 (9%)

Query: 98  AVDFF-RWAGRGQRLSPYAWNLMVDVL---GKNGRFEQMWNAV--RVMKEDGVLSLPTFA 151
           AV+ F     +G      A+N ++      GK G   Q++  +  R  K D V    +  
Sbjct: 316 AVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTV----SHN 371

Query: 152 SIFDSYCGAGKYDEAVMSFDVMSM-HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK 210
            + D    A + D+AV  F+ M   HG   D+V  NSL+  +C  E + S A++    + 
Sbjct: 372 IMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLC-GEQRLSEAMKVFKEID 430

Query: 211 KI-VDPDGDSFAILLEGWEKEGN 232
           ++ + PD  +F +LLE     G+
Sbjct: 431 RLKLSPDPHAFNVLLEAMYAAGH 453


>gi|224123678|ref|XP_002319139.1| predicted protein [Populus trichocarpa]
 gi|222857515|gb|EEE95062.1| predicted protein [Populus trichocarpa]
          Length = 518

 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 116/460 (25%), Positives = 194/460 (42%), Gaps = 25/460 (5%)

Query: 53  ARIICEILAHASSDDIE--SALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--G 108
           A+ I  IL  +  + +E  S +   GI  + +LV EVL    +   +A  FF WA R  G
Sbjct: 25  AKTIVNILQESCDNRVEMKSKIEQCGIKVSQELVLEVLSRVRNDWEAAFTFFLWAARQPG 84

Query: 109 QRLSPYAWNLMVDVLGKNGRFEQMW---NAVRVMKEDGVLSLP-TFASIFDSYCGAGKYD 164
              S   ++ M+ +LGK  +F+  W   + +R +K    L  P T   +   YC      
Sbjct: 85  YAHSVREYHSMISILGKMRKFDTAWVLIDEMRGVKTGVSLVTPQTLLIMIRKYCAVHDVG 144

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN-QTSRALEFLNRVKKIVDPDGDSFAIL 223
            A+ +F        +  +    SLLSA+CR +N Q +  L + N  K +   +  SF I+
Sbjct: 145 RAINTFYAYKRFKFDMGIEEFQSLLSALCRYKNVQDAEQLMYCN--KAVFPLNTKSFNIV 202

Query: 224 LEGW-EKEGNVEEANKTFGEMVER---FEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           L GW    G+  E+ + + EM +R   F+     V++Y + +    +   +   L+  + 
Sbjct: 203 LNGWCNLIGSPRESERVWREMSKRGIRFD-----VVSYASMMSCYSKAGSLYRVLRLYKQ 257

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
           MK     P  K ++  +  L K      A  L   M   G  + PN++ YN++I  LC  
Sbjct: 258 MKKIGIEPDRKVYNAVIHALAKGRLVNEAFNLMKTMEEKG--VAPNIVTYNSLIKPLCRA 315

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
             V+     FD M+     P   TY+     L   +   EV     +M K   QP     
Sbjct: 316 RKVEEAKGAFDDMLKRCISPTIRTYHAFLRIL---RTGEEVFALLEKMRKMGCQPINDTY 372

Query: 400 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
              I       + E   ++W+ + ENGI P  +S   L+ GL   G L    ++  EM  
Sbjct: 373 IMLIRKFCRWRQLENVFKLWDEMSENGISPDRSSYIVLIHGLFLNGELDAAHKYYTEMKE 432

Query: 460 RRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQM 499
           +++L        L+    N+  +     +S   +C+T+++
Sbjct: 433 KQLLPEPKIDEMLQTWLSNKQIAEGQTTESRSNQCQTTEL 472


>gi|242049112|ref|XP_002462300.1| hypothetical protein SORBIDRAFT_02g023500 [Sorghum bicolor]
 gi|241925677|gb|EER98821.1| hypothetical protein SORBIDRAFT_02g023500 [Sorghum bicolor]
          Length = 541

 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 108/424 (25%), Positives = 181/424 (42%), Gaps = 18/424 (4%)

Query: 56  ICEILA--HASSDDIESALACTGIIP--TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL 111
           +C +L+       D+ +AL   G  P  TP    +VL+   + P  ++ FF +A      
Sbjct: 53  LCRVLSDFRGPRHDLRAAL--DGFAPRLTPAAAADVLRRCRNLPVPSLRFFLFAAALPGF 110

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKED---GVLSLPTFASIFDSYCGAGKYDEAVM 168
           +    +L++  L  +    +++  +R +  D     LS   F  +F +Y  AG  D+A+ 
Sbjct: 111 THLPESLLI--LAGSLAGARLFPLLRSLLSDLPRPALSRDLFPLLFRAYARAGLPDDAIR 168

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
           +F  M   G    V  ++SLL  +         A  F        D    ++ IL+ GW 
Sbjct: 169 AFSSMERFGFLPTVADLHSLLFTLS-HNGLVEHAEAFFRESPIQFDVSAKTYTILISGWA 227

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM-KGENCFP 287
                E+A K F EM+ER    P+ V AY   +  L RG  V  A + L+ M +     P
Sbjct: 228 VVAKPEKAQKLFDEMIER-GVQPD-VPAYNALIDALCRGGDVALAQEQLKDMQRSRGLAP 285

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFR 347
               +   L       D+  A+++ D M     +L PN+  YNAVI LLC   +VD  + 
Sbjct: 286 DAATYGPFLRSACASKDARAALRVLDRMRA--RSLTPNVFTYNAVIRLLCELGEVDEAYN 343

Query: 348 FFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 407
             ++M  +G  PD  +YN +     K K V++  +    M +    P   +    + ML+
Sbjct: 344 ILNEMATYGEKPDVWSYNTLLNTHCKLKEVNKALRLISRMDEGLCLPNRHSYNMILKMLI 403

Query: 408 DADEPEIAIEIWNYILENGILPLEASANELLVGLR-NLGRLSDVRRFAEEMLNRRILIYE 466
                + AIE+W+ + + G  P  A+   ++ GL    GR  +   +   M++  I  Y+
Sbjct: 404 AIGRVDRAIEVWDGMEKRGFHPGAATYAVMIHGLSCKKGRAEEACSYFLRMVDDGIPPYQ 463

Query: 467 VTMH 470
            T  
Sbjct: 464 ATCQ 467


>gi|449469499|ref|XP_004152457.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Cucumis sativus]
 gi|449487784|ref|XP_004157799.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Cucumis sativus]
          Length = 502

 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 162/365 (44%), Gaps = 8/365 (2%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWNAVR 137
           TP+LV +VL+  +     A+ FF+          S  +++  +D+ G+   ++ +W  V 
Sbjct: 77  TPELVDKVLKRLWFHGPKALQFFKHLEYHPSYAHSASSFDHAIDIAGRMRDYKTVWALVA 136

Query: 138 VMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
            M+   +  S  TFA I + +  AGK D A+  F  M  HG  QD+ + N++L  +C+ +
Sbjct: 137 RMRARRIGPSSKTFAIIAERFVAAGKPDRAIKVFLSMREHGCPQDLHSFNTILDILCKSK 196

Query: 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
                       ++     D  S+ I+  GW       +A +   EMVER    P  +  
Sbjct: 197 RVEMAYNNLFKVLRGKFKADVVSYNIIANGWCLIKRTPKALEVLKEMVER-GLTPT-ITT 254

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
           Y   L    R  Q+ EA +F   MK       +  ++  +     + +   A ++++ MV
Sbjct: 255 YNILLKGYFRAGQLKEAWEFFLQMKEREVEIDVVTYTTMVHGFGVVGEIKRARKVFNEMV 314

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
           G G  ++P+   YNA+I +LC  D V+N    F++MV  G  P+  TYN++   L     
Sbjct: 315 GEG--ILPSTATYNAMIQVLCKKDSVENAVLMFEEMVKKGYVPNLTTYNVVIRGLFHAGN 372

Query: 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 436
           + +  +F   M  +  +P       AI    DA + E  + ++   +  G LP   + N 
Sbjct: 373 MDKAMEFIERMKTDGCEPNVQTYNVAIRYFCDAGDVEKGLSMFEK-MGQGSLPNLDTYNV 431

Query: 437 LLVGL 441
           L+  +
Sbjct: 432 LISAM 436



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 104/252 (41%), Gaps = 18/252 (7%)

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
           + P   +FAI+ E +   G  + A K F  M E     P+ + ++ T L  L + K+V+ 
Sbjct: 143 IGPSSKTFAIIAERFVAAGKPDRAIKVFLSMRE--HGCPQDLHSFNTILDILCKSKRVEM 200

Query: 273 ALK-FLRVMKGENCFPTLKFFSNALDILVKLND------STHAVQLWDIMVGIGFNLMPN 325
           A     +V++G       KF ++ +   +  N       +  A+++   MV  G  L P 
Sbjct: 201 AYNNLFKVLRG-------KFKADVVSYNIIANGWCLIKRTPKALEVLKEMVERG--LTPT 251

Query: 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 385
           +  YN ++        +   + FF QM       D +TY  +         +    K F+
Sbjct: 252 ITTYNILLKGYFRAGQLKEAWEFFLQMKEREVEIDVVTYTTMVHGFGVVGEIKRARKVFN 311

Query: 386 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
           EM+     P+       I +L   D  E A+ ++  +++ G +P   + N ++ GL + G
Sbjct: 312 EMVGEGILPSTATYNAMIQVLCKKDSVENAVLMFEEMVKKGYVPNLTTYNVVIRGLFHAG 371

Query: 446 RLSDVRRFAEEM 457
            +     F E M
Sbjct: 372 NMDKAMEFIERM 383



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 91/226 (40%), Gaps = 21/226 (9%)

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
           ++KTF  + ERF                 +   + D A+K    M+   C   L  F+  
Sbjct: 146 SSKTFAIIAERF-----------------VAAGKPDRAIKVFLSMREHGCPQDLHSFNTI 188

Query: 296 LDILVKLNDSTHAVQ-LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
           LDIL K      A   L+ ++ G       +++ YN +    C             +MV 
Sbjct: 189 LDILCKSKRVEMAYNNLFKVLRG---KFKADVVSYNIIANGWCLIKRTPKALEVLKEMVE 245

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 414
            G  P   TYN++ +   +  ++ E  +FF +M + E +   +   T +       E + 
Sbjct: 246 RGLTPTITTYNILLKGYFRAGQLKEAWEFFLQMKEREVEIDVVTYTTMVHGFGVVGEIKR 305

Query: 415 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           A +++N ++  GILP  A+ N ++  L     + +     EEM+ +
Sbjct: 306 ARKVFNEMVGEGILPSTATYNAMIQVLCKKDSVENAVLMFEEMVKK 351



 Score = 42.4 bits (98), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 41/202 (20%), Positives = 82/202 (40%), Gaps = 6/202 (2%)

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGI-GFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
           F +A+DI  ++ D      +W ++  +    + P+   +  +          D   + F 
Sbjct: 115 FDHAIDIAGRMRDYK---TVWALVARMRARRIGPSSKTFAIIAERFVAAGKPDRAIKVFL 171

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
            M  HG   D  ++N I + L K+KRV        ++++ +++   ++            
Sbjct: 172 SMREHGCPQDLHSFNTILDILCKSKRVEMAYNNLFKVLRGKFKADVVSYNIIANGWCLIK 231

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 470
               A+E+   ++E G+ P   + N LL G    G+L +   F  +M  R + I  VT  
Sbjct: 232 RTPKALEVLKEMVERGLTPTITTYNILLKGYFRAGQLKEAWEFFLQMKEREVEIDVVTYT 291

Query: 471 KLKKAF--YNESRSMRDIFDSL 490
            +   F    E +  R +F+ +
Sbjct: 292 TMVHGFGVVGEIKRARKVFNEM 313


>gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa]
 gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa]
          Length = 764

 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/358 (22%), Positives = 155/358 (43%), Gaps = 4/358 (1%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK 162
           R   +G   S  A+N ++  LGK G+ ++       MK D + +LPT+  I    C AG 
Sbjct: 226 RQRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEEMKRDAMPNLPTYNIIIGMLCKAGN 285

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
            + A    D M   G+  +V  +N ++  +C+ +        F     K+  PDG +F  
Sbjct: 286 VEAAFKVRDAMKEAGLFPNVRTINIMIDRLCKAQKLDEACSIFEGMDYKVCSPDGATFCS 345

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L++G  K+G V++A + +  M++  +    +V+ Y + +    +  + ++  K  + M  
Sbjct: 346 LIDGLGKQGRVDDAYRIYERMLDADQI--PNVVVYTSLIRNFFKCDRKEDGHKMYKEMMR 403

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
             C P L   +  +D + K  ++     L++ +   GF  +P+   Y+ +I  L      
Sbjct: 404 SGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKARGF--LPDTRSYSILIHSLVKAGFA 461

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
              +  +  M   G   D+  YN + +   K+ +V++  +   EM      PT +   + 
Sbjct: 462 RETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSV 521

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           +  L   D  + A  ++     NGI   +   + L+ G   +GR+ +     EEM+ +
Sbjct: 522 VDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQK 579



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 154/376 (40%), Gaps = 12/376 (3%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEA 166
           G  ++ +    ++ V  + GR +   + +  MK +     +  +    D +   GK D A
Sbjct: 91  GYEVNVHLLTTLIRVFSREGRVDAALSLLDEMKSNTFDADIVLYNVCIDCFGKVGKVDMA 150

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD-PDGDSFAILLE 225
              F  M  +G+  D V   S++  +C+  N+   A+E   ++++    P   ++  ++ 
Sbjct: 151 WKFFHEMKANGLVPDDVTYTSMMGVLCKA-NRLDEAVEIFEQMEQNRQVPCAYAYNTMIM 209

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+   G  +EA        +R +     V+AY   L  L +  + D+AL+    MK  + 
Sbjct: 210 GYGSAGKFDEAYSLLER--QRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEEMK-RDA 266

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P L  ++  + +L K  +   A ++ D M   G  L PN+   N +I  LC    +D  
Sbjct: 267 MPNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAG--LFPNVRTINIMIDRLCKAQKLDEA 324

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
              F+ M +    PD  T+  + + L K  RV +  + +  M+  +  P  +   + I  
Sbjct: 325 CSIFEGMDYKVCSPDGATFCSLIDGLGKQGRVDDAYRIYERMLDADQIPNVVVYTSLIRN 384

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL-- 463
               D  E   +++  ++ +G  P     N  +  +   G     R   EE+  R  L  
Sbjct: 385 FFKCDRKEDGHKMYKEMMRSGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKARGFLPD 444

Query: 464 --IYEVTMHKLKKAFY 477
              Y + +H L KA +
Sbjct: 445 TRSYSILIHSLVKAGF 460



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 139/328 (42%), Gaps = 45/328 (13%)

Query: 83  LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED 142
           L+H +++  +   +  + ++    +G  L   A+N ++D   K+G+  + +  +  MK  
Sbjct: 451 LIHSLVKAGFARETYEL-YYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTM 509

Query: 143 GVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSR 201
           G   ++ T+ S+ D      + DEA M F+    +G+E                      
Sbjct: 510 GHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIE---------------------- 547

Query: 202 ALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFL 261
               LN+V          ++ L++G+ K G V+EA     EM+++    P +V  +   L
Sbjct: 548 ----LNQV---------IYSSLIDGFGKVGRVDEAYLVMEEMMQK-GLTP-NVYTWNCLL 592

Query: 262 ITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFN 321
             L++ ++++EAL   + MK   C P    +   ++ L K+     A   W  M   G  
Sbjct: 593 DGLVKAEEINEALVCFQSMKDLKCTPNQITYCILINGLCKVRKFNKAFVFWQEMQKQG-- 650

Query: 322 LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 381
           L PN I Y A+I  L  + +V      F++    G  PDS +YN + E L    R  +  
Sbjct: 651 LKPNTITYTAMISGLAKSGNVAQASSLFERFRASGGIPDSASYNAMIEGLSIANRALDAY 710

Query: 382 KFFHEMIKNEWQPTPLNCATAITMLLDA 409
           + F E      +   ++  T +  LLDA
Sbjct: 711 QLFEE---TRLKGCSIHTKTCVA-LLDA 734



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 84/416 (20%), Positives = 166/416 (39%), Gaps = 39/416 (9%)

Query: 119 MVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           ++D LGK GR +  +    R++  D + ++  + S+  ++    + ++    +  M   G
Sbjct: 346 LIDGLGKQGRVDDAYRIYERMLDADQIPNVVVYTSLIRNFFKCDRKEDGHKMYKEMMRSG 405

Query: 178 VEQDVVAVNSLLSAICRQ-ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA 236
              D++ +N+ +  + +  E +  RAL F     +   PD  S++IL+    K G   E 
Sbjct: 406 CSPDLMLLNTYMDCVFKAGETEKGRAL-FEEIKARGFLPDTRSYSILIHSLVKAGFARET 464

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
            + +  M +  +       AY T +    +  +V++A + L  MK     PT+  + + +
Sbjct: 465 YELYYAMKD--QGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSVV 522

Query: 297 DILVKLNDSTHAVQLWD----------------IMVGIGF-----------------NLM 323
           D L K++    A  L++                ++ G G                   L 
Sbjct: 523 DGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKGLT 582

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           PN+  +N ++  L   ++++     F  M      P+ +TY ++   L K ++ ++   F
Sbjct: 583 PNVYTWNCLLDGLVKAEEINEALVCFQSMKDLKCTPNQITYCILINGLCKVRKFNKAFVF 642

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
           + EM K   +P  +     I+ L  +     A  ++     +G +P  AS N ++ GL  
Sbjct: 643 WQEMQKQGLKPNTITYTAMISGLAKSGNVAQASSLFERFRASGGIPDSASYNAMIEGLSI 702

Query: 444 LGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN-ESRSMRDIFDSLERRCKTSQ 498
             R  D  +  EE   +   I+  T   L  A +  E      I  ++ R    SQ
Sbjct: 703 ANRALDAYQLFEETRLKGCSIHTKTCVALLDALHKAECLEQAAIVGAVLRETAKSQ 758



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 73/315 (23%), Positives = 126/315 (40%), Gaps = 7/315 (2%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           +   + ++  +    G+ D  +  F+ M   G E +V  + +L+    R E +   AL  
Sbjct: 60  AFSAYTTLIGALSEVGESDRMLALFNQMQELGYEVNVHLLTTLIRVFSR-EGRVDAALSL 118

Query: 206 LNRVKK-IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L+ +K    D D   + + ++ + K G V+ A K F EM       P+ V  Y + +  L
Sbjct: 119 LDEMKSNTFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKAN-GLVPDDV-TYTSMMGVL 176

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
            +  ++DEA++    M+     P    ++  +           A  L +     G   +P
Sbjct: 177 CKANRLDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQRAKG--CIP 234

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           +++ YN ++  L      D   R F++M    A P+  TYN+I   L K   V    K  
Sbjct: 235 SVVAYNCILTCLGKKGKTDKALRIFEEMK-RDAMPNLPTYNIIIGMLCKAGNVEAAFKVR 293

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
             M +    P        I  L  A + + A  I+  +      P  A+   L+ GL   
Sbjct: 294 DAMKEAGLFPNVRTINIMIDRLCKAQKLDEACSIFEGMDYKVCSPDGATFCSLIDGLGKQ 353

Query: 445 GRLSDVRRFAEEMLN 459
           GR+ D  R  E ML+
Sbjct: 354 GRVDDAYRIYERMLD 368



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/196 (20%), Positives = 91/196 (46%), Gaps = 2/196 (1%)

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG 319
            + + ++ +++ EA   L++M+     P    ++  +  L ++ +S   + L++ M  +G
Sbjct: 32  LVASCVKSRKLIEAFDLLQMMRHFKFRPAFSAYTTLIGALSEVGESDRMLALFNQMQELG 91

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
           + +  N+ +   +I +      VD      D+M  +    D + YN+  +C  K  +V  
Sbjct: 92  YEV--NVHLLTTLIRVFSREGRVDAALSLLDEMKSNTFDADIVLYNVCIDCFGKVGKVDM 149

Query: 380 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 439
             KFFHEM  N   P  +   + + +L  A+  + A+EI+  + +N  +P   + N +++
Sbjct: 150 AWKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDEAVEIFEQMEQNRQVPCAYAYNTMIM 209

Query: 440 GLRNLGRLSDVRRFAE 455
           G  + G+  +     E
Sbjct: 210 GYGSAGKFDEAYSLLE 225


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 92/350 (26%), Positives = 155/350 (44%), Gaps = 7/350 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++  LGK GR  + +     M+E G V    T+ S+       G+  +A+   + M 
Sbjct: 117 YNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEME 176

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV-DPDGDSFAILLEGWEKEGNV 233
            HG   DV+  +SL++ + + + +T +A +    +K+    PD  +F  L++   K G V
Sbjct: 177 RHGCPPDVMTYSSLITGLGK-DGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRV 235

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           ++A +   EM ER       V+ Y   +    +   + EA   L  MK   C P +  +S
Sbjct: 236 DDALELLDEMKER--GVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYS 293

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +  L+K +    A Q+   M   G    P+ I YN +I  L     +++  R FD+M 
Sbjct: 294 CLITGLIKASQLDEACQVLKKMEKEG--CPPDTITYNTLINGLGKAGLLNDAGRLFDRMK 351

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G  PD +TY+ +   L K  RV      F EM     QP      + IT+L  A + +
Sbjct: 352 SKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVD 411

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
            A  +++ +   G+ P   + N  L  L   GR  + R+  E+M    +L
Sbjct: 412 DADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLL 461



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 95/391 (24%), Positives = 177/391 (45%), Gaps = 13/391 (3%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDE 165
           +G + + + +N +VD LGK G+F++    +  M+++G V  + T+  +  +   AG+  E
Sbjct: 73  KGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSE 132

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILL 224
           A   F  M   G   D    NSL+  + +   ++ +A+E L  +++    PD  +++ L+
Sbjct: 133 AFTLFAEMRERGCVPDTFTYNSLIYGLGKV-GRSQKAMELLEEMERHGCPPDVMTYSSLI 191

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G  K+G   +A K F EM  R    P+ +  +   +  L +  +VD+AL+ L  MK   
Sbjct: 192 TGLGKDGETVKAFKLFQEMKRRGR-KPDSI-TFTALMDALGKAGRVDDALELLDEMKERG 249

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
             P +  ++  +    K+ D   A  L D M   G    P+++ Y+ +I  L     +D 
Sbjct: 250 VKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCK--PDVVTYSCLITGLIKASQLDE 307

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
             +   +M   G  PD++TYN +   L K   +++  + F  M      P  +  +T IT
Sbjct: 308 ACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLIT 367

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNR 460
            L  A   E A  ++  +   GI P   +   ++  L   G++ D  R   EM    L+ 
Sbjct: 368 ALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSP 427

Query: 461 RILIYEVTMHKLKKAFYNESRSMRDIFDSLE 491
            ++ Y   ++ L +      +  R IF+ ++
Sbjct: 428 DVITYNAFLNSLGRG--GRFKEARKIFEDMK 456



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 89/353 (25%), Positives = 155/353 (43%), Gaps = 7/353 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG++     +  ++D LGK GR +     +  MKE GV   + T+ ++   +   G   E
Sbjct: 213 RGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVE 272

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILL 224
           A    D M  +G + DVV  + L++ + +  +Q   A + L +++K    PD  ++  L+
Sbjct: 273 AYNLLDEMKRNGCKPDVVTYSCLITGLIKA-SQLDEACQVLKKMEKEGCPPDTITYNTLI 331

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G  K G + +A + F  M  +   NP+ V+ Y T +  L +  +V+ A      M+   
Sbjct: 332 NGLGKAGLLNDAGRLFDRMKSK-GCNPD-VVTYSTLITALGKAARVESACVLFEEMESVG 389

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
             P L  + + + +L K      A +L+  M G G  L P++I YNA +  L        
Sbjct: 390 IQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKG--LSPDVITYNAFLNSLGRGGRFKE 447

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
             + F+ M   G  PD  TY+ +   L K K V +      E+I+       L     + 
Sbjct: 448 ARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLE 507

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           +L      + A E+  +    G+ P  +S N L+  L   GR+S+     E++
Sbjct: 508 ILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDL 560



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 117/268 (43%), Gaps = 4/268 (1%)

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           +K    P+  ++  LL    K G  EEA   F E+ +  +W P+ V++Y   + +L R  
Sbjct: 1   MKGFPSPNVVTYNSLLNALAKAGQCEEAQLLFEEL-KAAKWTPD-VVSYSCLINSLGRAG 58

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           + + AL+ +  M+ + C P L  ++  +D L K      A++L   M   G   +P++  
Sbjct: 59  KWEAALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNG--CVPDVRT 116

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           YN +I  L     +   F  F +M   G  PD+ TYN +   L K  R  +  +   EM 
Sbjct: 117 YNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEME 176

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
           ++   P  +  ++ IT L    E   A +++  +   G  P   +   L+  L   GR+ 
Sbjct: 177 RHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVD 236

Query: 449 DVRRFAEEMLNRRILIYEVTMHKLKKAF 476
           D     +EM  R +    VT + L   F
Sbjct: 237 DALELLDEMKERGVKPGVVTYNALIAGF 264



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 87/383 (22%), Positives = 162/383 (42%), Gaps = 47/383 (12%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ S+ ++   AG+ +EA + F+ +       DVV+ + L++++ R   +   ALE +  
Sbjct: 11  TYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRA-GKWEAALEVVAE 69

Query: 209 VK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           ++ K   P+  ++  L++   K G  +EA +   EM  R       V  Y   + TL + 
Sbjct: 70  MQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEM--RDNGCVPDVRTYNCLISTLGKA 127

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
            ++ EA      M+   C P    +++ +  L K+  S  A++L + M   G    P+++
Sbjct: 128 GRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHG--CPPDVM 185

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVH--------- 378
            Y+++I  L  + +    F+ F +M   G  PDS+T+  + + L K  RV          
Sbjct: 186 TYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEM 245

Query: 379 --------------------------EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
                                     E      EM +N  +P  +  +  IT L+ A + 
Sbjct: 246 KERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQL 305

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNRRILIYEVT 468
           + A ++   + + G  P   + N L+ GL   G L+D  R  + M     N  ++ Y   
Sbjct: 306 DEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTL 365

Query: 469 MHKLKKAFYNESRSMRDIFDSLE 491
           +  L KA   ES  +  +F+ +E
Sbjct: 366 ITALGKAARVESACV--LFEEME 386



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 130/296 (43%), Gaps = 9/296 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N +++ LGK G           MK  G    + T++++  +   A + + A + F+ M 
Sbjct: 327 YNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEME 386

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNV 233
             G++ D+    S+++ + +   Q   A    + ++ K + PD  ++   L    + G  
Sbjct: 387 SVGIQPDLFTYCSIITVLGKA-GQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRF 445

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC-FPTLKFF 292
           +EA K F +M E     P+ V  Y+  L+ L + K+VD+A   L+ +  + C F +LKF 
Sbjct: 446 KEARKIFEDMKES-GLLPD-VATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKF- 502

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
              L+IL    +   A +L       G  L P    YNA+I  L     V   F   + +
Sbjct: 503 DECLEILTSWGNVDEAHELLQFANSKG--LWPGASSYNALIDALAKAGRVSEAFNTLEDL 560

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
              G  PD ++Y+ +   L +  ++    +   EM K   + +P + +  +  L D
Sbjct: 561 KEQGGKPDIVSYSSLISALGQTGQIDTAFELLEEMSKRGLKLSPRSYSNLVRKLQD 616



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 67/315 (21%), Positives = 138/315 (43%), Gaps = 9/315 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           ++ ++  L K  + ++    ++ M+++G      T+ ++ +    AG  ++A   FD M 
Sbjct: 292 YSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMK 351

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G   DVV  ++L++A+ +     S  + F       + PD  ++  ++    K G V+
Sbjct: 352 SKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVD 411

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           +A++ F EM  R +     V+ Y  FL +L RG +  EA K    MK     P +  +  
Sbjct: 412 DADRLFSEM--RGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDA 469

Query: 295 ALDILVKLNDSTHAVQLWDIMV--GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
            L  L K  +   A  L   ++  G  F+ +     ++  + +L +  +VD         
Sbjct: 470 LLLGLSKTKEVDDACGLLKELIEQGCAFDSLK----FDECLEILTSWGNVDEAHELLQFA 525

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
              G +P + +YN + + L K  RV E      ++ +   +P  ++ ++ I+ L    + 
Sbjct: 526 NSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQI 585

Query: 413 EIAIEIWNYILENGI 427
           + A E+   + + G+
Sbjct: 586 DTAFELLEEMSKRGL 600



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 89/203 (43%), Gaps = 12/203 (5%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           RG+ LSP    +N  ++ LG+ GRF++       MKE G+L  + T+ ++        + 
Sbjct: 421 RGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEV 480

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN--QTSRALEFLNRVKKIVDPDGDSFA 221
           D+A      +   G   D +  +  L  +    N  +    L+F N   K + P   S+ 
Sbjct: 481 DDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQFAN--SKGLWPGASSYN 538

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L++   K G V EA  T  ++ E  +     +++Y + +  L +  Q+D A + L  M 
Sbjct: 539 ALIDALAKAGRVSEAFNTLEDLKE--QGGKPDIVSYSSLISALGQTGQIDTAFELLEEMS 596

Query: 282 GENCFPTLKFFSNALDILVKLND 304
                 + + +SN   ++ KL D
Sbjct: 597 KRGLKLSPRSYSN---LVRKLQD 616


>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
 gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 158/347 (45%), Gaps = 12/347 (3%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF ++ +  C   K  +AV  FD +   G    ++   +++  +C+    T+ AL+ L +
Sbjct: 143 TFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCKI-GHTTNALQLLKK 201

Query: 209 VK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           ++ K   PD  ++  +++   K+    EA   F EMV+  +  P +V+ Y + L      
Sbjct: 202 MEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVD--QGIPPNVVTYSSILHGFCNL 259

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
            Q++EA    + M G N  P    F+  +D L K      A +++++M   G    P+  
Sbjct: 260 GQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVE--PDAY 317

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            Y+A++   C    +D   + FD MV  G  P    YN++     K++R++E +    EM
Sbjct: 318 TYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEM 377

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
              +  P  +  +T +     A  P++A +++  +   G+LP   + + LL GL   G L
Sbjct: 378 YDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHL 437

Query: 448 SDVRRFAEEMLNRR----ILIYEVTMHKLKKAFYNESRSMRDIFDSL 490
            +  R  + M   +    I IY + +  +    + +  + R++F +L
Sbjct: 438 DEAFRLLKAMQESKIEPHICIYNILIQGMCN--FGKLEAARELFSNL 482



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 82/357 (22%), Positives = 156/357 (43%), Gaps = 9/357 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G +    A+N ++D L K+ R  +       M + G+  ++ T++SI   +C  G+ +E
Sbjct: 205 KGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNE 264

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN--QTSRALEFLNRVKKIVDPDGDSFAIL 223
           A   F  M    V  + V    L+  +C++    +  R  E +   +  V+PD  +++ L
Sbjct: 265 ATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMM--TENGVEPDAYTYSAL 322

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           ++G+  +  ++EA K F  MV +  + P  V  Y   +    + ++++EA   L  M   
Sbjct: 323 MDGYCLQSQMDEAQKLFDIMVGK-GFAPS-VRVYNILINGHCKSRRLNEAKTLLSEMYDR 380

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
           +  P    +S  +    +      A +L+  M   G  L+P+ I Y+ ++  LC +  +D
Sbjct: 381 DLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYG--LLPDSITYSILLDGLCKHGHLD 438

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
             FR    M      P    YN++ + +    ++    + F  +     QP+ +     I
Sbjct: 439 EAFRLLKAMQESKIEPHICIYNILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMI 498

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           + LL       A E++  ++ NG LP   + N  + G    G  S+  R  EEM+ R
Sbjct: 499 SGLLKEGLSNEACEMFRKMVVNGCLPNSCTYNVAIQGFLRNGDPSNAVRLIEEMVGR 555



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/362 (23%), Positives = 153/362 (42%), Gaps = 13/362 (3%)

Query: 131 QMWNAVRVMKEDGVL----SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN 186
           ++ +AV++  E G +    SL T+ +I    C  G    A+     M   G + DVVA N
Sbjct: 156 KIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYN 215

Query: 187 SLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
           +++ ++C+          F   V + + P+  +++ +L G+   G + EA   F +M+ R
Sbjct: 216 TVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGR 275

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
               P  V  +   +  L +   + EA +   +M      P    +S  +D     +   
Sbjct: 276 -NVMPNTV-TFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMD 333

Query: 307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM 366
            A +L+DIMVG GF   P++ +YN +I   C +  ++       +M      PD++TY+ 
Sbjct: 334 EAQKLFDIMVGKGF--APSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYST 391

Query: 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 426
           + +   +  R    +K F EM      P  +  +  +  L      + A  +   + E+ 
Sbjct: 392 LMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESK 451

Query: 427 ILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVTMHK-LKKAFYNESR 481
           I P     N L+ G+ N G+L   R     +  + I    + Y V +   LK+   NE+ 
Sbjct: 452 IEPHICIYNILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEAC 511

Query: 482 SM 483
            M
Sbjct: 512 EM 513



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/336 (21%), Positives = 143/336 (42%), Gaps = 10/336 (2%)

Query: 77  IIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAV 136
           ++    ++H    L   + ++++ F +  GR    +   + ++VD L K G   +     
Sbjct: 246 VVTYSSILHGFCNLGQLNEATSL-FKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVF 304

Query: 137 RVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
            +M E+GV     T++++ D YC   + DEA   FD+M   G    V   N L++  C+ 
Sbjct: 305 EMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKS 364

Query: 196 ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
                          + + PD  +++ L++G+ + G  + A K F EM   +   P+ + 
Sbjct: 365 RRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCS-YGLLPDSI- 422

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
            Y   L  L +   +DEA + L+ M+     P +  ++  +  +        A +L+  +
Sbjct: 423 TYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQGMCNFGKLEAARELFSNL 482

Query: 316 VGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 375
              G  + P+++ Y  +I  L      +     F +MV +G  P+S TYN+  +  ++N 
Sbjct: 483 FVKG--IQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPNSCTYNVAIQGFLRNG 540

Query: 376 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
                 +   EM+   +       ++   MLLD + 
Sbjct: 541 DPSNAVRLIEEMVGRGFSAD----SSTFQMLLDLES 572



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 81/204 (39%), Gaps = 39/204 (19%)

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346
           PT   F   L+ L        AV+L+D +  +GF   P+LI Y  +I  LC      N  
Sbjct: 139 PTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGF--APSLITYTTIIKGLCKIGHTTNAL 196

Query: 347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406
           +   +M   G  PD + YN + + L K++R +E   FF EM+                  
Sbjct: 197 QLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMV------------------ 238

Query: 407 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYE 466
                            + GI P   + + +L G  NLG+L++     ++M+ R ++   
Sbjct: 239 -----------------DQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNT 281

Query: 467 VTMHKLKKAFYNESRSM--RDIFD 488
           VT   L      E   +  R +F+
Sbjct: 282 VTFTILVDGLCKEGMILEARRVFE 305



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 83/211 (39%), Gaps = 4/211 (1%)

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY 329
           V +A+     + G    P +  F+  L  LVK    +  + L   M     N+ PN+   
Sbjct: 50  VADAVASFNQLLGIRPLPPVVVFNKLLGSLVKKKHYSTVISLCKQMDLS--NIRPNVYTL 107

Query: 330 NAVIGLLC--NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
             +I  LC  N D V   F    +M   G  P  +T+  +   L    ++ +  K F E+
Sbjct: 108 TILINCLCHSNRDHVHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEI 167

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
            K  + P+ +   T I  L        A+++   + E G  P   + N ++  L    R 
Sbjct: 168 GKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRA 227

Query: 448 SDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 478
           ++   F  EM+++ I    VT   +   F N
Sbjct: 228 NEAMYFFSEMVDQGIPPNVVTYSSILHGFCN 258


>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Glycine max]
          Length = 725

 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 154/325 (47%), Gaps = 7/325 (2%)

Query: 150 FASIFDSYCGAGKYDEAV-MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           + ++   Y  +G+++EA  + ++ M + G E D    N ++  + ++    S ALE LN 
Sbjct: 344 YNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVS-ALELLNE 402

Query: 209 -VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            V K  +P+  ++ IL+ G+ K+G +EEA +    M  +      + + Y   +  L + 
Sbjct: 403 MVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAK--GLSLNTVGYNCLICALCKD 460

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
             ++EAL+    M G+ C P +  F++ ++ L K +    A+ L+  M   G  ++ N +
Sbjct: 461 GNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEG--VIANTV 518

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            YN ++      D +   F+  D+M+F G   D++TYN + + L K   V +    F EM
Sbjct: 519 TYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEM 578

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
           +     PT ++C   I+ L    +   A++    ++  G+ P   + N L+ GL  +G +
Sbjct: 579 LGKGIFPTIISCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHV 638

Query: 448 SDVRRFAEEMLNRRILIYEVTMHKL 472
            +      ++ +  I    +T + L
Sbjct: 639 QEASNLFNKLQSEGIRPDAITYNTL 663



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 125/301 (41%), Gaps = 11/301 (3%)

Query: 108 GQRLSPYAWNLMVDVLGKNG----RFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKY 163
           G     Y +N+M+D L K G      E +   V    E  V+   T+  + + +C  G+ 
Sbjct: 372 GYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVI---TYTILINGFCKQGRL 428

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
           +EA    + MS  G+  + V  N L+ A+C+  N       F     K   PD  +F  L
Sbjct: 429 EEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSL 488

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           + G  K   +EEA   + +M    E    + + Y T +   +    + +A K +  M   
Sbjct: 489 INGLCKNHKMEEALSLYHDMF--LEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFR 546

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
            C      ++  +  L K       + L++ M+G G  + P +I  N +I  LC    V+
Sbjct: 547 GCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKG--IFPTIISCNILISGLCRTGKVN 604

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
           +  +F   M+  G  PD +TYN +   L K   V E    F+++     +P  +   T I
Sbjct: 605 DALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDAITYNTLI 664

Query: 404 T 404
           +
Sbjct: 665 S 665



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 107/505 (21%), Positives = 200/505 (39%), Gaps = 94/505 (18%)

Query: 67  DIESALACTGIIPTPDLVHEVLQLSYDSPSSAVD-FFRWAGRGQRLSPYAWNLMVDVLGK 125
           D+    +C     + ++V ++L +  D P  A + F+    RG   + Y + +++  L  
Sbjct: 159 DMWGVYSCDPTFKSYNVVLDIL-VDGDCPRVAPNVFYDMLSRGVSPTVYTFGVVMKALCM 217

Query: 126 NGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVA 184
               +   + +R M + G + +   + ++  + C   +  EA+   + M +   E DV  
Sbjct: 218 VSEVDSACSLLRDMAKHGCVPNSVIYQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQT 277

Query: 185 VNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
            N ++  +CR   +   A + L+R + +    D  ++  L+ G  + G V+EA     ++
Sbjct: 278 FNDVIHGLCRA-GRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEARALLNKI 336

Query: 244 VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR---VMKGENCFPTLKFFSNALDILV 300
                 NP  VL Y T +   +   + +EA   L    V+ G    P    F+  +D LV
Sbjct: 337 P-----NPNTVL-YNTLISGYVASGRFEEAKDLLYNNMVIAGYE--PDAYTFNIMIDGLV 388

Query: 301 KLNDSTHAVQLWDIMVGIGFNLMPNLIMY------------------------------- 329
           K      A++L + MV   F   PN+I Y                               
Sbjct: 389 KKGYLVSALELLNEMVAKRFE--PNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLN 446

Query: 330 ----NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 385
               N +I  LC + +++   + F +M   G  PD  T+N +   L KN ++ E    +H
Sbjct: 447 TVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYH 506

Query: 386 EM-----IKNE---------------------------WQPTPLNCAT---AITMLLDAD 410
           +M     I N                            ++  PL+  T    I  L    
Sbjct: 507 DMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTG 566

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR----ILIYE 466
             E  + ++  +L  GI P   S N L+ GL   G+++D  +F ++M++R     I+ Y 
Sbjct: 567 AVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYN 626

Query: 467 VTMHKLKKAFYNESRSMRDIFDSLE 491
             ++ L K  + +  S  ++F+ L+
Sbjct: 627 SLINGLCKMGHVQEAS--NLFNKLQ 649



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 91/412 (22%), Positives = 174/412 (42%), Gaps = 37/412 (8%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAG--RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVR 137
           +P  + ++L+L  D P+S ++ F+ AG  +G   +  A  L++D LG  G F+ +   ++
Sbjct: 65  SPFQLCKLLELPLDIPTS-MELFQRAGAQKGYSHTFDACYLLIDKLGAVGDFKVIEKLLK 123

Query: 138 VMKEDGVLSLPT-FASIFDSYCGAGKYDEAV-MSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
            MK++G+L   + F  I   Y  AG   +A  +  D+  ++  +    + N +L  +   
Sbjct: 124 QMKDEGLLFKESLFILIMKHYGKAGLPGQATRLLLDMWGVYSCDPTFKSYNVVLDILVDG 183

Query: 196 ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
           +        F + + + V P   +F ++++       V+ A     +M  +    P  V+
Sbjct: 184 DCPRVAPNVFYDMLSRGVSPTVYTFGVVMKALCMVSEVDSACSLLRDMA-KHGCVPNSVI 242

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
            Y+T +  L    +V EAL+ L  M    C P ++ F++ +  L +      A +L D M
Sbjct: 243 -YQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDRM 301

Query: 316 VGIGFN--------LM---------------------PNLIMYNAVI-GLLCNNDDVDNV 345
           +  GF+        LM                     PN ++YN +I G + +    +  
Sbjct: 302 LLRGFSTDALTYGYLMHGLCRMGQVDEARALLNKIPNPNTVLYNTLISGYVASGRFEEAK 361

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
              ++ MV  G  PD+ T+N++ + L+K   +    +  +EM+   ++P  +     I  
Sbjct: 362 DLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILING 421

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
                  E A EI N +   G+       N L+  L   G + +  +   EM
Sbjct: 422 FCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEM 473



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 7/134 (5%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFAS---IFDSYCGAGKY 163
           RG  L    +N ++  L K G  E+       M   G+   PT  S   +    C  GK 
Sbjct: 546 RGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIF--PTIISCNILISGLCRTGKV 603

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAI 222
           ++A+     M   G+  D+V  NSL++ +C+       A    N+++ + + PD  ++  
Sbjct: 604 NDALKFLQDMIHRGLTPDIVTYNSLINGLCKM-GHVQEASNLFNKLQSEGIRPDAITYNT 662

Query: 223 LLEGWEKEGNVEEA 236
           L+     EG   +A
Sbjct: 663 LISRHCHEGMFNDA 676


>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
 gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
          Length = 497

 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/361 (23%), Positives = 158/361 (43%), Gaps = 7/361 (1%)

Query: 96  SSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASI 153
           S AV+       RG       + ++VD L K  +    W  +R M + G + +L T+ S+
Sbjct: 130 SQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSL 189

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV 213
               C A +  +A+     M+  G   +VV   +L+  +C+            + + K  
Sbjct: 190 LHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGG 249

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
            PD   + +L+ G  K   V+E+       V      P+ V+ Y + +  L R  ++DEA
Sbjct: 250 TPDLMIYNMLINGLCKADQVDESIALLRRAVS-GGIKPD-VVTYSSVIYGLCRSNRLDEA 307

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
            + L  +K   C P +  +S  +D L K      A  L+++M G G +   +++ Y+ +I
Sbjct: 308 CRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCD--ADVVTYSTLI 365

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
             LC    VD       +MV  G  P ++TYN + + L     + E  +   EM ++   
Sbjct: 366 DGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCA 425

Query: 394 PTPLNCATAITMLLDADEPE-IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 452
           P+ +     I  +   +  +  A++ +  +++NG++P   + + LL GL+    L ++R 
Sbjct: 426 PSAVTYNILIHGMCRMERVDSAALDYFQEMIDNGVIPDHITYSILLEGLKKSKDLHELRH 485

Query: 453 F 453
            
Sbjct: 486 L 486



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 95/388 (24%), Positives = 174/388 (44%), Gaps = 16/388 (4%)

Query: 97  SAVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASI 153
           +A++FFR      R SP    +++++D L K  R  Q    +  MK  G    + T+  +
Sbjct: 97  TALEFFRKMD--DRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTIL 154

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KI 212
            D  C   K   A      M   G   ++V  NSLL  +CR   + S AL  +  +  + 
Sbjct: 155 VDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRAR-RVSDALALMRDMTCRG 213

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
             P+  ++  L++G  K G V++A     +M+++    P+ ++ Y   +  L +  QVDE
Sbjct: 214 CTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDK-GGTPD-LMIYNMLINGLCKADQVDE 271

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAV 332
           ++  LR        P +  +S+ +  L + N    A +L   +   G    P++I+Y+ +
Sbjct: 272 SIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCP--PDVILYSTL 329

Query: 333 IGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 392
           I  LC    VD  F  ++ M   G   D +TY+ + + L K  RV E       M++   
Sbjct: 330 IDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGT 389

Query: 393 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL-SDVR 451
            P+ +   + I  L D +  + AIE+   +  +   P   + N L+ G+  + R+ S   
Sbjct: 390 PPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAAL 449

Query: 452 RFAEEMLNRRI----LIYEVTMHKLKKA 475
            + +EM++  +    + Y + +  LKK+
Sbjct: 450 DYFQEMIDNGVIPDHITYSILLEGLKKS 477



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 144/341 (42%), Gaps = 43/341 (12%)

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEG 231
           M  HG E +VV  NSL+  +C+  N+  RA E    +K +   P   ++  LL+G  + G
Sbjct: 1   MRDHGCEPNVVTYNSLIDGLCKN-NEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTG 59

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            +E A   F EM++R   +   V+++   +  L R  +++ AL+F R M  + C P +  
Sbjct: 60  KLERAMALFQEMLDRRSHD---VISFNILVTGLCRAGKIETALEFFRKMD-DRCSPNVIT 115

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFN------------------------------ 321
           +S  +D L K N  + AV+L + M   G +                              
Sbjct: 116 YSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREML 175

Query: 322 ---LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVH 378
               +PNL+ YN+++  LC    V +       M   G  P+ +TY  + + L K  RV 
Sbjct: 176 DAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVK 235

Query: 379 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 438
           +      +MI     P  +     I  L  AD+ + +I +    +  GI P   + + ++
Sbjct: 236 DACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVI 295

Query: 439 VGLRNLGRLSDVRRFAEEMLNRR----ILIYEVTMHKLKKA 475
            GL    RL +  R    + +R     +++Y   +  L KA
Sbjct: 296 YGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKA 336



 Score = 41.6 bits (96), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 64/142 (45%), Gaps = 6/142 (4%)

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 414
           HG  P+ +TYN + + L KN      ++ F  M   E  P+ +   T +  L    + E 
Sbjct: 4   HGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLER 63

Query: 415 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR---RILIYEVTMHK 471
           A+ ++  +L+     +  S N L+ GL   G++     F  +M +R    ++ Y V +  
Sbjct: 64  AMALFQEMLDRRSHDV-ISFNILVTGLCRAGKIETALEFFRKMDDRCSPNVITYSVLIDG 122

Query: 472 LKKAFYNESRSMRDIFDSLERR 493
           L KA  N      ++ +S++ R
Sbjct: 123 LCKA--NRVSQAVELLESMKAR 142


>gi|47848296|dbj|BAD22160.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 454

 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 144/326 (44%), Gaps = 12/326 (3%)

Query: 74  CTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQ--RLSPYAWNLMVDVLGKNGRFEQ 131
           C+GI  T ++V  +L    D   SA+ FF+WA      R + YA N MVD+LGK  + +Q
Sbjct: 29  CSGIRLTGNIVDTLLFKFGDDWKSALGFFQWAQSRDDYRHTAYACNRMVDLLGKMRQIDQ 88

Query: 132 MWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
           MW  +  M   G++++ T A       GA ++ + V+ FD +   G+E++   +N LL  
Sbjct: 89  MWELLSDMHGRGLVTVETVAKSIRRLAGARRWKDVVLLFDKLEDMGLERNTETMNVLLDV 148

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           +C+ E +   A E    +   + PD  +F I + GW     ++EA  T  EM  R    P
Sbjct: 149 LCK-ERKIEVAREVFAVLSPHIPPDAYTFNIFVHGWCSIRRIDEAMWTIEEMKRR--GFP 205

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
             V+ Y T L    + +      + L  M  + C P +  ++  +  L K      A+ +
Sbjct: 206 PSVITYTTVLEAYCKQRNFRRVYEVLDSMGSQGCHPNVITYTMIMTSLAKCERFEEALSV 265

Query: 312 WDIMVGIGFNLMPNLIMYNAVIGLLCNND---DVDNVFRFFDQMVFHGAFPDSLTYNMIF 368
              M   G    P+ + YN++I LL  +    +   VFR   +M  +G   +  TYN + 
Sbjct: 266 SHRMKSSGCK--PDTLFYNSLINLLGKSGHLFEASQVFRV--EMPMNGVSHNLATYNTMI 321

Query: 369 ECLIKNKRVHEVEKFFHEMIKNEWQP 394
                  R  +      EM     +P
Sbjct: 322 SIFCYYGRDDDALNVLKEMEAQSCKP 347



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 105/243 (43%), Gaps = 7/243 (2%)

Query: 130 EQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSL 188
           E MW  +  MK  G   S+ T+ ++ ++YC    +       D M   G   +V+    +
Sbjct: 191 EAMWT-IEEMKRRGFPPSVITYTTVLEAYCKQRNFRRVYEVLDSMGSQGCHPNVITYTMI 249

Query: 189 LSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF 247
           ++++ + E +   AL   +R+K     PD   +  L+    K G++ EA++ F   VE  
Sbjct: 250 MTSLAKCE-RFEEALSVSHRMKSSGCKPDTLFYNSLINLLGKSGHLFEASQVF--RVEMP 306

Query: 248 EWNPEHVLA-YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
                H LA Y T +       + D+AL  L+ M+ ++C P ++ +   L + +      
Sbjct: 307 MNGVSHNLATYNTMISIFCYYGRDDDALNVLKEMEAQSCKPDIQSYRPLLRLFLSRRGQA 366

Query: 307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM 366
             V+     +    NL  +L  Y  +I  LC   D    ++ FD+MV     P S T  M
Sbjct: 367 DTVRHLLSELTSKHNLGLDLDTYTLLIHGLCRVGDTVWAYQLFDEMVSSEIAPRSKTCVM 426

Query: 367 IFE 369
           + +
Sbjct: 427 LLD 429


>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 168/356 (47%), Gaps = 7/356 (1%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G R + Y + + + VLG+ G+ ++ +   R M ++G    L T+  + D+ C AG+ + A
Sbjct: 257 GLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENA 316

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLE 225
              F  M  +G + D V   +LL              EF ++++     PD  +F IL++
Sbjct: 317 KELFVKMKANGHKPDQVIYITLLDKF-NDFGDLDTFKEFWSQMEADGYMPDVVTFTILVD 375

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
              K  + +EA  TF  M  R +    ++  Y T +  L+R  ++++ALK L  M+    
Sbjct: 376 VLCKARDFDEAFATFDVM--RKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGV 433

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            PT   ++  +D   K  ++  AV+ ++ M   G  ++PN++  NA +  L     +   
Sbjct: 434 QPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKG--IVPNIVACNASLYSLAEMGRLREA 491

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
              F+ +  +G  PDS+TYNM+ +C  K  +V E      EMI+N  +P  +   + I  
Sbjct: 492 KTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDS 551

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461
           L  A   + A ++++ + +  + P   + N LL GL   GR+       E M+ ++
Sbjct: 552 LYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKK 607



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 158/354 (44%), Gaps = 6/354 (1%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           +  +LSP    +N ++  LGK GR ++       M E     +  +F ++ D +C   + 
Sbjct: 569 KDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEV 628

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
           + A+  F  M++   + DV+  N+++  + + EN+ + A  F +++KK + PD  +   L
Sbjct: 629 ELALKMFSKMTVMDCKPDVLTYNTVIYGLIK-ENKVNHAFWFFHQLKKSMHPDHVTICTL 687

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           L G  K G + +A     + + +  +        +    TL+   ++D+A+ F   +   
Sbjct: 688 LPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWEDLMGGTLVEA-EMDKAIIFAEELVLN 746

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
                  F    + +L K     +A Q++D        + P L  YN +IG L      +
Sbjct: 747 GICREDSFLIPLVRVLCKHKRELYAYQIFDKFTK-KLGISPTLASYNCLIGELLEVHYTE 805

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
             +  F  M   G  PD+ T+NM+     K+ ++ E+ + + EMI    +P  +     I
Sbjct: 806 KAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVI 865

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           + L  ++  + A++ +  ++ +   P   +   L+ GL  +GRL +  R  EEM
Sbjct: 866 SSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEM 919



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 146/315 (46%), Gaps = 10/315 (3%)

Query: 129 FEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS 187
           F++ W+    M+ DG +  + TF  + D  C A  +DEA  +FDVM   G+  ++   N+
Sbjct: 351 FKEFWSQ---MEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNT 407

Query: 188 LLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
           L+  + R   +   AL+ L  ++ + V P   ++ I ++ + K G   +A +TF +M  +
Sbjct: 408 LICGLLRA-GRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKM--K 464

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
            +    +++A    L +L    ++ EA      ++     P    ++  +    K+    
Sbjct: 465 AKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVD 524

Query: 307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM 366
            AV L   M+  G    P++I+ N++I  L     VD  ++ FD+M      P  +TYN 
Sbjct: 525 EAVNLLSEMIRNGCE--PDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNT 582

Query: 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 426
           +   L K  RV +  + F  MI+ +  P  ++  T +      DE E+A+++++ +    
Sbjct: 583 LLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMD 642

Query: 427 ILPLEASANELLVGL 441
             P   + N ++ GL
Sbjct: 643 CKPDVLTYNTVIYGL 657



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 128/282 (45%), Gaps = 6/282 (2%)

Query: 177  GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEE 235
            G+   + + N L+  +  + + T +A +    +K +   PD  +F +LL    K G + E
Sbjct: 783  GISPTLASYNCLIGELL-EVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITE 841

Query: 236  ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
              + + EM+ R    P+ +  Y   + +L +   +D+AL F   +   +  PT + +   
Sbjct: 842  LFELYKEMISR-RCKPDAI-TYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPL 899

Query: 296  LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
            +D L K+     A++L++ M   G    PN  ++N +I       D +   + F +MV  
Sbjct: 900  IDGLAKVGRLEEAMRLFEEMSDYGCK--PNCAIFNILINGYGKIGDTETACQLFKRMVNE 957

Query: 356  GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 415
            G  PD  +Y ++ +CL    RV E   +F+E+      P  +     I  L  +   E A
Sbjct: 958  GIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEA 1017

Query: 416  IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
            + ++N +   GI+P   + N L++ L   G +   +R  EE+
Sbjct: 1018 LALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEEL 1059



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/377 (21%), Positives = 159/377 (42%), Gaps = 9/377 (2%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G  L+ Y++N ++ +L ++G   +     R M  +G+  SL T++++  +  G  +  E 
Sbjct: 187 GFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVAL-GKKRDSEM 245

Query: 167 VMSF-DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILL 224
           VM     M   G+  +V      +  + R   +   A E   R+  +   PD  ++ +L+
Sbjct: 246 VMVLLKEMEDLGLRPNVYTFTICIRVLGRA-GKIDEAYEIFRRMDDEGCGPDLVTYTVLI 304

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           +     G +E A + F +M       P+ V+ Y T L        +D   +F   M+ + 
Sbjct: 305 DALCNAGQLENAKELFVKMKANGH-KPDQVI-YITLLDKFNDFGDLDTFKEFWSQMEADG 362

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
             P +  F+  +D+L K  D   A   +D+M   G  ++PNL  YN +I  L     +++
Sbjct: 363 YMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQG--ILPNLHTYNTLICGLLRAGRIED 420

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
             +    M   G  P + TYN+  +   K+    +  + F +M      P  + C  ++ 
Sbjct: 421 ALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLY 480

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 464
            L +      A  ++N + ENG+ P   + N ++     +G++ +      EM+      
Sbjct: 481 SLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEP 540

Query: 465 YEVTMHKLKKAFYNESR 481
             + ++ L  + Y   R
Sbjct: 541 DVIVVNSLIDSLYKAGR 557



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 82/355 (23%), Positives = 149/355 (41%), Gaps = 39/355 (10%)

Query: 54   RIIC----EILAHASSDDIESALACTGIIPTPD----LVHEVLQLSYDSPSSAVDFFR-W 104
            R++C    E+ A+   D     L   GI PT      L+ E+L++ Y     A D F+  
Sbjct: 760  RVLCKHKRELYAYQIFDKFTKKL---GISPTLASYNCLIGELLEVHY--TEKAWDLFKDM 814

Query: 105  AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM-----KEDGVLSLPTFASIFDSYCG 159
               G     + +N+++ V GK+G+  +++   + M     K D +    T+  +  S   
Sbjct: 815  KNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAI----TYNIVISSLAK 870

Query: 160  AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD----P 215
            +   D+A+  F  +    V  D          +     +  R  E +   +++ D    P
Sbjct: 871  SNNLDKALDFFYDL----VSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKP 926

Query: 216  DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK 275
            +   F IL+ G+ K G+ E A + F  MV   E     + +Y   +  L    +VDEAL 
Sbjct: 927  NCAIFNILINGYGKIGDTETACQLFKRMVN--EGIRPDLKSYTILVDCLCLAGRVDEALY 984

Query: 276  FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGL 335
            +   +K     P    ++  ++ L K      A+ L++ M   G  ++P+L  YN+++  
Sbjct: 985  YFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRG--IVPDLYTYNSLMLN 1042

Query: 336  LCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 390
            L     V+   R ++++   G  PD  TYN     LI+   + E  +  + + KN
Sbjct: 1043 LGLAGMVEQAKRMYEELQLAGLEPDVFTYN----ALIRGYSLSENPEHAYTVYKN 1093



 Score = 39.3 bits (90), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 54/110 (49%), Gaps = 1/110 (0%)

Query: 115  AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            A+N +++ LGK+ R E+       M+  G++  L T+ S+  +   AG  ++A   ++ +
Sbjct: 1000 AYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEEL 1059

Query: 174  SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
             + G+E DV   N+L+      EN       + N +    +P+  ++A L
Sbjct: 1060 QLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQL 1109


>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 557

 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 159/350 (45%), Gaps = 42/350 (12%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N++V+ + + GR +     ++ +   G   +  ++  +    C A ++++A      MS
Sbjct: 229 YNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMS 288

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNV 233
             G   +VV  N L+S +CR+      A+E L+++ K    P+  S+  +L  + K+  +
Sbjct: 289 QKGYPPNVVTFNMLISFLCRR-GLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKM 347

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           + A      MV R  +    +++Y T L  L RG +VD A++ L  +K + C P L  ++
Sbjct: 348 DRAMAFVELMVSRGCY--PDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYN 405

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +D L K   +  A++L + MV  G  L P++I Y+ +   LC  D ++   R F ++ 
Sbjct: 406 TVIDGLTKAGKTKEALELLNEMVTKG--LQPDIITYSTISSGLCREDRIEEAIRAFCKVQ 463

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G  P+++ YN I   L K +  H                                   
Sbjct: 464 DMGIRPNTVLYNAILLGLCKRRETHN---------------------------------- 489

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
            AI+++ Y++ NG +P E++   L+ GL   G + + R    E+ +R ++
Sbjct: 490 -AIDLFIYMISNGCMPNESTYTILIEGLTYEGLVKEARELLGELCSRGVV 538



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 148/333 (44%), Gaps = 13/333 (3%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVM----KEDGVLSLPTFASIFDSYCGAGKYDEAVMS 169
           Y +N ++  L   GR     NA+ V+    +   V  + T+  + ++ C    Y +A+  
Sbjct: 157 YTYNTLIRGLCGRGR---TGNALVVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAMKL 213

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWE 228
            D M   G   D++  N +++ IC QE +   A+EFL  +     +P+  S+ I+L+G  
Sbjct: 214 LDEMRAKGCAPDIITYNVVVNGIC-QEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLC 272

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
                E+A K   EM ++    P +V+ +   +  L R   V+ A++ L  +    C P 
Sbjct: 273 TAERWEDAEKLMAEMSQK--GYPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPN 330

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
              ++  L    K      A+   ++MV  G    P+++ YN ++  LC   +VD     
Sbjct: 331 SLSYNPILHAFCKQKKMDRAMAFVELMVSRG--CYPDIVSYNTLLTALCRGGEVDAAVEL 388

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
             Q+   G  P  ++YN + + L K  +  E  +  +EM+    QP  +  +T  + L  
Sbjct: 389 LHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTISSGLCR 448

Query: 409 ADEPEIAIEIWNYILENGILPLEASANELLVGL 441
            D  E AI  +  + + GI P     N +L+GL
Sbjct: 449 EDRIEEAIRAFCKVQDMGIRPNTVLYNAILLGL 481



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 90/389 (23%), Positives = 165/389 (42%), Gaps = 17/389 (4%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
           +P     ++  L  +GR  +    +   + D    +  + ++   YC  G+ D A     
Sbjct: 93  APGPCAALIKKLCASGRTAEARRVLAACEPD----VMAYNAMVAGYCVTGQLDAARRLVA 148

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEKE 230
            M M   E D    N+L+  +C +  +T  AL  L+  +++   PD  ++ ILLE   K 
Sbjct: 149 DMPM---EPDSYTYNTLIRGLCGR-GRTGNALVVLDDMLRRGCVPDVVTYTILLEATCKR 204

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
              ++A K   EM  R +     ++ Y   +  + +  +VD+A++FL+ +    C P   
Sbjct: 205 SGYKQAMKLLDEM--RAKGCAPDIITYNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTV 262

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
            ++  L  L        A +L   M   G+   PN++ +N +I  LC    V+      D
Sbjct: 263 SYNIVLKGLCTAERWEDAEKLMAEMSQKGYP--PNVVTFNMLISFLCRRGLVEPAMEVLD 320

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
           Q+  +G  P+SL+YN I     K K++     F   M+     P  ++  T +T L    
Sbjct: 321 QIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTALCRGG 380

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 470
           E + A+E+ + + + G  P+  S N ++ GL   G+  +      EM+ + +    +T  
Sbjct: 381 EVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALELLNEMVTKGLQPDIITYS 440

Query: 471 KLKKAFYNESRSMRDIFDSLERRCKTSQM 499
            +      E R    I +++   CK   M
Sbjct: 441 TISSGLCREDR----IEEAIRAFCKVQDM 465


>gi|115475660|ref|NP_001061426.1| Os08g0272200 [Oryza sativa Japonica Group]
 gi|37806221|dbj|BAC99723.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|37806377|dbj|BAC99889.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113623395|dbj|BAF23340.1| Os08g0272200 [Oryza sativa Japonica Group]
 gi|125602810|gb|EAZ42135.1| hypothetical protein OsJ_26694 [Oryza sativa Japonica Group]
          Length = 528

 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 97/389 (24%), Positives = 166/389 (42%), Gaps = 24/389 (6%)

Query: 83  LVHEVLQLSYDSPSSAVDFFRW-----AGRGQRLSPY--------AWNLMVDVLGKNGRF 129
           LV  + +L  D P +A    RW     A  G+R  P         AW+L +   GK  RF
Sbjct: 101 LVRALWELRRD-PDAAALALRWGEEGCAAAGERAGPPPPPPPPAEAWHLTIWAAGKARRF 159

Query: 130 EQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLL 189
           +  W  VR M   GVL+      + + Y  A + ++A+ +FD M     E D     SLL
Sbjct: 160 DLAWAVVRRMLRRGVLTSRAMVIVMERYAAANEVNKAIKTFDAMEKFKTEADQTVFYSLL 219

Query: 190 SAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW-EKEGNVEEANKTFGEMVERFE 248
            A+C+ +N    A E L   KK      + F I+L+GW     ++ EA + + EM   + 
Sbjct: 220 RALCKNKN-IEDAEELLLVRKKFFPLTAEGFNIILDGWCNVITDIAEAKRIWREM-SNYC 277

Query: 249 WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHA 308
             P+   +Y   +    +   + + L+    MK     P++  +++ + +L K N     
Sbjct: 278 ITPDGT-SYTLMVSCFAKVGNLFDTLRVYDEMKKRGWTPSIAVYNSLIYVLTKENCMKDV 336

Query: 309 VQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIF 368
             ++  ++  G  L PN+  YN++I  LC +  +D      + M+  G  P  LTY+   
Sbjct: 337 QNIFTRIIDEG--LQPNVKTYNSMIVPLCESRKLDEARMVLEDMMLKGIVPTILTYH--- 391

Query: 369 ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 428
              ++ + + E  KF  +M  +   P        I      +EP  A+++WN +    I 
Sbjct: 392 -TFLRQENIDETLKFLKKMKDDGCGPKSDTFLMLIDRFFQLNEPGHALKLWNEMKRYDIR 450

Query: 429 PLEASANELLVGLRNLGRLSDVRRFAEEM 457
           P  +    ++ GL   G +     + +EM
Sbjct: 451 PSYSHYMSVVQGLIKHGCMQRALEYYDEM 479



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/253 (21%), Positives = 104/253 (41%), Gaps = 41/253 (16%)

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           +  I++E +     V +A KTF  M E+F+   +  + Y + L  L + K +++A + L 
Sbjct: 179 AMVIVMERYAAANEVNKAIKTFDAM-EKFKTEADQTVFY-SLLRALCKNKNIEDAEELLL 236

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
           V K        KFF                      +   GFN+         ++   CN
Sbjct: 237 VRK--------KFFP---------------------LTAEGFNI---------ILDGWCN 258

Query: 339 N-DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
              D+    R + +M  +   PD  +Y ++  C  K   + +  + + EM K  W P+  
Sbjct: 259 VITDIAEAKRIWREMSNYCITPDGTSYTLMVSCFAKVGNLFDTLRVYDEMKKRGWTPSIA 318

Query: 398 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
              + I +L   +  +    I+  I++ G+ P   + N ++V L    +L + R   E+M
Sbjct: 319 VYNSLIYVLTKENCMKDVQNIFTRIIDEGLQPNVKTYNSMIVPLCESRKLDEARMVLEDM 378

Query: 458 LNRRILIYEVTMH 470
           + + I+   +T H
Sbjct: 379 MLKGIVPTILTYH 391


>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g31850, chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 167/356 (46%), Gaps = 7/356 (1%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G R + Y + + + VLG+ G+ ++ +   R M ++G    L T+  + D+ C AG+ + A
Sbjct: 257 GLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENA 316

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLE 225
              F  M  +G + D V   +LL              EF ++++     PD  +F IL++
Sbjct: 317 KELFVKMKANGHKPDQVIYITLLDKF-NDFGDLDTFKEFWSQMEADGYMPDVVTFTILVD 375

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
              K  + +EA  TF  M  R +    ++  Y T +  L+R  ++++ALK L  M+    
Sbjct: 376 VLCKARDFDEAFATFDVM--RKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVGV 433

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            PT   +   +D   K  ++  AV+ ++ M   G  ++PN++  NA +  L     +   
Sbjct: 434 QPTAYTYITFIDYFGKSGETGKAVETFEKMKAKG--IVPNIVACNASLYSLAEMGRLREA 491

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
              F+ +  +G  PDS+TYNM+ +C  K  +V E      EMI+N  +P  +   + I  
Sbjct: 492 KTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDS 551

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461
           L  A   + A ++++ + +  + P   + N LL GL   GR+       E M+ ++
Sbjct: 552 LYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKK 607



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 79/354 (22%), Positives = 158/354 (44%), Gaps = 6/354 (1%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSYCGAGKY 163
           +  +LSP    +N ++  LGK GR ++       M  +    +  +F ++ D +C   + 
Sbjct: 569 KDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEV 628

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
           + A+  F  M++   + DV+  N+++  + + EN+ + A  F +++KK + PD  +   L
Sbjct: 629 ELALKMFSKMTVMDCKPDVLTYNTVIYGLIK-ENKVNHAFWFFHQLKKSMHPDHVTICTL 687

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           L G  K G + +A     + + +  +        +    TL+   ++D+A+ F   +   
Sbjct: 688 LPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWEDLMGGTLVEA-EMDKAIIFAEELVLN 746

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
                  F    + +L K     +A Q++D        + P L  YN +IG L      +
Sbjct: 747 GICREDSFLIPLVRVLCKHKRELYAYQIFDKFTK-KLGISPTLASYNCLIGELLEVHYTE 805

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
             +  F  M   G  PD+ T+NM+     K+ ++ E+ + + EMI    +P  +     I
Sbjct: 806 KAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVI 865

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           + L  ++  + A++ +  ++ +   P   +   L+ GL  +GRL +  R  EEM
Sbjct: 866 SSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEM 919



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 145/315 (46%), Gaps = 10/315 (3%)

Query: 129 FEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS 187
           F++ W+    M+ DG +  + TF  + D  C A  +DEA  +FDVM   G+  ++   N+
Sbjct: 351 FKEFWSQ---MEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNT 407

Query: 188 LLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
           L+  + R   +   AL+ L+ ++ + V P   ++   ++ + K G   +A +TF +M  +
Sbjct: 408 LICGLLRA-GRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKM--K 464

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
            +    +++A    L +L    ++ EA      ++     P    ++  +    K+    
Sbjct: 465 AKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVD 524

Query: 307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM 366
            AV L   M+  G    P++I+ N++I  L     VD  ++ FD+M      P  +TYN 
Sbjct: 525 EAVNLLSEMIRNGCE--PDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNT 582

Query: 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 426
           +   L K  RV +  + F  MI  +  P  ++  T +      DE E+A+++++ +    
Sbjct: 583 LLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMD 642

Query: 427 ILPLEASANELLVGL 441
             P   + N ++ GL
Sbjct: 643 CKPDVLTYNTVIYGL 657



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 128/282 (45%), Gaps = 6/282 (2%)

Query: 177  GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEE 235
            G+   + + N L+  +  + + T +A +    +K +   PD  +F +LL    K G + E
Sbjct: 783  GISPTLASYNCLIGELL-EVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITE 841

Query: 236  ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
              + + EM+ R    P+ +  Y   + +L +   +D+AL F   +   +  PT + +   
Sbjct: 842  LFELYKEMISR-RCKPDAI-TYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPL 899

Query: 296  LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
            +D L K+     A++L++ M   G    PN  ++N +I       D +   + F +MV  
Sbjct: 900  IDGLAKVGRLEEAMRLFEEMSDYGCK--PNCAIFNILINGYGKIGDTETACQLFKRMVNE 957

Query: 356  GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 415
            G  PD  +Y ++ +CL    RV E   +F+E+      P  +     I  L  +   E A
Sbjct: 958  GIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEA 1017

Query: 416  IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
            + ++N +   GI+P   + N L++ L   G +   +R  EE+
Sbjct: 1018 LALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEEL 1059



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/331 (22%), Positives = 139/331 (41%), Gaps = 7/331 (2%)

Query: 123 LGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD 181
           L   G   QM   +  M++ G VL+  ++  +      +G   EA+  +  M   G++  
Sbjct: 167 LSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPS 226

Query: 182 VVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTF 240
           +   ++L+ A+ ++ + +   +  L  ++ + + P+  +F I +    + G ++EA + F
Sbjct: 227 LKTYSALMVALGKKRD-SEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIF 285

Query: 241 GEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV 300
             M +  E     ++ Y   +  L    Q++ A +    MK     P    +   LD   
Sbjct: 286 RRMDD--EGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFN 343

Query: 301 KLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPD 360
              D     + W  M   G+  MP+++ +  ++ +LC   D D  F  FD M   G  P+
Sbjct: 344 DFGDLDTFKEFWSQMEADGY--MPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPN 401

Query: 361 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 420
             TYN +   L++  R+ +  K    M     QPT     T I     + E   A+E + 
Sbjct: 402 LHTYNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFE 461

Query: 421 YILENGILPLEASANELLVGLRNLGRLSDVR 451
            +   GI+P   + N  L  L  +GRL + +
Sbjct: 462 KMKAKGIVPNIVACNASLYSLAEMGRLREAK 492



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 81/377 (21%), Positives = 158/377 (41%), Gaps = 9/377 (2%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G  L+ Y++N ++ +L ++G   +     R M  +G+  SL T++++  +  G  +  E 
Sbjct: 187 GFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVAL-GKKRDSEM 245

Query: 167 VMSF-DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILL 224
           VM     M   G+  +V      +  + R   +   A E   R+  +   PD  ++ +L+
Sbjct: 246 VMVLLKEMEDLGLRPNVYTFTICIRVLGRA-GKIDEAYEIFRRMDDEGCGPDLVTYTVLI 304

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           +     G +E A + F +M       P+ V+ Y T L        +D   +F   M+ + 
Sbjct: 305 DALCNAGQLENAKELFVKMKANGH-KPDQVI-YITLLDKFNDFGDLDTFKEFWSQMEADG 362

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
             P +  F+  +D+L K  D   A   +D+M   G  ++PNL  YN +I  L     +++
Sbjct: 363 YMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQG--ILPNLHTYNTLICGLLRAGRIED 420

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
             +  D M   G  P + TY    +   K+    +  + F +M      P  + C  ++ 
Sbjct: 421 ALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLY 480

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 464
            L +      A  ++N + ENG+ P   + N ++     +G++ +      EM+      
Sbjct: 481 SLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEP 540

Query: 465 YEVTMHKLKKAFYNESR 481
             + ++ L  + Y   R
Sbjct: 541 DVIVVNSLIDSLYKAGR 557



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 82/355 (23%), Positives = 149/355 (41%), Gaps = 39/355 (10%)

Query: 54   RIIC----EILAHASSDDIESALACTGIIPTPD----LVHEVLQLSYDSPSSAVDFFR-W 104
            R++C    E+ A+   D     L   GI PT      L+ E+L++ Y     A D F+  
Sbjct: 760  RVLCKHKRELYAYQIFDKFTKKL---GISPTLASYNCLIGELLEVHY--TEKAWDLFKDM 814

Query: 105  AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM-----KEDGVLSLPTFASIFDSYCG 159
               G     + +N+++ V GK+G+  +++   + M     K D +    T+  +  S   
Sbjct: 815  KNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAI----TYNIVISSLAK 870

Query: 160  AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD----P 215
            +   D+A+  F  +    V  D          +     +  R  E +   +++ D    P
Sbjct: 871  SNNLDKALDFFYDL----VSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKP 926

Query: 216  DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK 275
            +   F IL+ G+ K G+ E A + F  MV   E     + +Y   +  L    +VDEAL 
Sbjct: 927  NCAIFNILINGYGKIGDTETACQLFKRMVN--EGIRPDLKSYTILVDCLCLAGRVDEALY 984

Query: 276  FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGL 335
            +   +K     P    ++  ++ L K      A+ L++ M   G  ++P+L  YN+++  
Sbjct: 985  YFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRG--IVPDLYTYNSLMLN 1042

Query: 336  LCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 390
            L     V+   R ++++   G  PD  TYN     LI+   + E  +  + + KN
Sbjct: 1043 LGLAGMVEQAKRMYEELQLAGLEPDVFTYN----ALIRGYSLSENPEHAYTVYKN 1093



 Score = 39.3 bits (90), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 54/110 (49%), Gaps = 1/110 (0%)

Query: 115  AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            A+N +++ LGK+ R E+       M+  G++  L T+ S+  +   AG  ++A   ++ +
Sbjct: 1000 AYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEEL 1059

Query: 174  SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
             + G+E DV   N+L+      EN       + N +    +P+  ++A L
Sbjct: 1060 QLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQL 1109


>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
 gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
 gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 577

 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 83/356 (23%), Positives = 167/356 (46%), Gaps = 6/356 (1%)

Query: 92  YDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPT 149
           ++  S AV    R   RG + +   + ++V+ L K G  +  +N +  M+   +  ++  
Sbjct: 203 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVI 262

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           ++++ DS C     D+A+  F  M   GV  +V+  +SL+S +C  E  +  +    + +
Sbjct: 263 YSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMI 322

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
           ++ ++P+  +F  L++ + KEG + EA K + EM++R   +P+ +  Y + +       +
Sbjct: 323 ERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKR-SIDPD-IFTYSSLINGFCMHDR 380

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY 329
           +DEA     +M  ++CFP +  ++  ++   K       V+L+  M   G  L+ N + Y
Sbjct: 381 LDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRG--LVGNTVTY 438

Query: 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389
             +I       D DN    F QMV  G  P+ +TYN + + L KN ++ +    F  + +
Sbjct: 439 TTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQR 498

Query: 390 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
           ++ +PT       I  +  A + E   +++  +   G+ P     N ++ G    G
Sbjct: 499 SKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKG 554



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 86/390 (22%), Positives = 164/390 (42%), Gaps = 19/390 (4%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSF 170
           S + +N ++  + K  +F+ + +    M+  G+  +L T+  + + +C   +   A+   
Sbjct: 84  SIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALL 143

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEK 229
             M   G E  +V ++SLL+  C  + + S A+  ++++ ++   PD  +F  L+ G   
Sbjct: 144 GKMMKLGYEPSIVTLSSLLNGYCHGK-RISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 202

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
                EA      MV+R    P +++ Y   +  L +   +D A   L  M+       +
Sbjct: 203 HNKASEAVALVDRMVQR-GCQP-NLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANV 260

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
             +S  +D L K      A+ L+  M   G  + PN+I Y+++I  LCN +   +  R  
Sbjct: 261 VIYSTVIDSLCKYRHEDDALNLFTEMENKG--VRPNVITYSSLISCLCNYERWSDASRLL 318

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 409
             M+     P+ +T+N + +  +K  ++ E EK + EMIK    P     ++ I      
Sbjct: 319 SDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMH 378

Query: 410 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTM 469
           D  + A  ++  ++     P   + N L+ G     R+ +      EM  R ++   VT 
Sbjct: 379 DRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTY 438

Query: 470 HKLKKAFYNESRSMRDIFDSLERRCKTSQM 499
             L   F+              R C  +QM
Sbjct: 439 TTLIHGFFQ------------ARDCDNAQM 456



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/372 (22%), Positives = 159/372 (42%), Gaps = 44/372 (11%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N++++   +  +       + ++MK     S+ T +S+ + YC   +  +AV   D 
Sbjct: 121 YTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQ 180

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEG 231
           M   G   D +   +L+  +    N+ S A+  ++R V++   P+  ++ +++ G  K G
Sbjct: 181 MVEMGYRPDTITFTTLIHGLFLH-NKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRG 239

Query: 232 NVEEANKTFGEM-VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           +++ A     +M   + E N   V+ Y T + +L + +  D+AL     M+ +   P + 
Sbjct: 240 DIDLAFNLLNKMEAAKIEAN---VVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVI 296

Query: 291 FFS----------------------------------NAL-DILVKLNDSTHAVQLWDIM 315
            +S                                  NAL D  VK      A +L+D M
Sbjct: 297 TYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEM 356

Query: 316 VGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 375
           +    +  P++  Y+++I   C +D +D     F+ M+    FP+ +TYN +     K K
Sbjct: 357 IKRSID--PDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAK 414

Query: 376 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 435
           R+ E  + F EM +       +   T I     A + + A  ++  ++ +G+ P   + N
Sbjct: 415 RIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYN 474

Query: 436 ELLVGLRNLGRL 447
            LL GL   G+L
Sbjct: 475 TLLDGLCKNGKL 486



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 56/289 (19%), Positives = 127/289 (43%), Gaps = 22/289 (7%)

Query: 90  LSYDSPSSAV-DFFRWAGRGQRLSPY----------AWNLMVDVLGKNGRF---EQMWNA 135
           ++Y S  S + ++ RW+   + LS             +N ++D   K G+    E++++ 
Sbjct: 296 ITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYD- 354

Query: 136 VRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
             ++K      + T++S+ + +C   + DEA   F++M       +VV  N+L++  C+ 
Sbjct: 355 -EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKA 413

Query: 196 ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
           +        F    ++ +  +  ++  L+ G+ +  + + A   F +MV   +    +++
Sbjct: 414 KRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVS--DGVHPNIM 471

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
            Y T L  L +  ++++A+     ++     PT+  ++  ++ + K          WD+ 
Sbjct: 472 TYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDG---WDLF 528

Query: 316 VGIGF-NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLT 363
             +    + P++I+YN +I   C     +     F +M   G  PDS T
Sbjct: 529 CSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDGPLPDSGT 577


>gi|297599556|ref|NP_001047351.2| Os02g0601600 [Oryza sativa Japonica Group]
 gi|255671066|dbj|BAF09265.2| Os02g0601600 [Oryza sativa Japonica Group]
          Length = 466

 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 144/326 (44%), Gaps = 12/326 (3%)

Query: 74  CTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQ--RLSPYAWNLMVDVLGKNGRFEQ 131
           C+GI  T ++V  +L    D   SA+ FF+WA      R + YA N MVD+LGK  + +Q
Sbjct: 41  CSGIRLTGNIVDTLLFKFGDDWKSALGFFQWAQSRDDYRHTAYACNRMVDLLGKMRQIDQ 100

Query: 132 MWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
           MW  +  M   G++++ T A       GA ++ + V+ FD +   G+E++   +N LL  
Sbjct: 101 MWELLSDMHGRGLVTVETVAKSIRRLAGARRWKDVVLLFDKLEDMGLERNTETMNVLLDV 160

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           +C+ E +   A E    +   + PD  +F I + GW     ++EA  T  EM  R    P
Sbjct: 161 LCK-ERKIEVAREVFAVLSPHIPPDAYTFNIFVHGWCSIRRIDEAMWTIEEMKRR--GFP 217

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
             V+ Y T L    + +      + L  M  + C P +  ++  +  L K      A+ +
Sbjct: 218 PSVITYTTVLEAYCKQRNFRRVYEVLDSMGSQGCHPNVITYTMIMTSLAKCERFEEALSV 277

Query: 312 WDIMVGIGFNLMPNLIMYNAVIGLLCNND---DVDNVFRFFDQMVFHGAFPDSLTYNMIF 368
              M   G    P+ + YN++I LL  +    +   VFR   +M  +G   +  TYN + 
Sbjct: 278 SHRMKSSGCK--PDTLFYNSLINLLGKSGHLFEASQVFRV--EMPMNGVSHNLATYNTMI 333

Query: 369 ECLIKNKRVHEVEKFFHEMIKNEWQP 394
                  R  +      EM     +P
Sbjct: 334 SIFCYYGRDDDALNVLKEMEAQSCKP 359



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 103/242 (42%), Gaps = 5/242 (2%)

Query: 130 EQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLL 189
           E MW    + +     S+ T+ ++ ++YC    +       D M   G   +V+    ++
Sbjct: 203 EAMWTIEEMKRRGFPPSVITYTTVLEAYCKQRNFRRVYEVLDSMGSQGCHPNVITYTMIM 262

Query: 190 SAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFE 248
           +++ + E +   AL   +R+K     PD   +  L+    K G++ EA++ F   VE   
Sbjct: 263 TSLAKCE-RFEEALSVSHRMKSSGCKPDTLFYNSLINLLGKSGHLFEASQVF--RVEMPM 319

Query: 249 WNPEHVLA-YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 307
               H LA Y T +       + D+AL  L+ M+ ++C P ++ +   L + +       
Sbjct: 320 NGVSHNLATYNTMISIFCYYGRDDDALNVLKEMEAQSCKPDIQSYRPLLRLFLSRRGQAD 379

Query: 308 AVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMI 367
            V+     +    NL  +L  Y  +I  LC   D    ++ FD+MV     P S T  M+
Sbjct: 380 TVRHLLSELTSKHNLGLDLDTYTLLIHGLCRVGDTVWAYQLFDEMVSSEIAPRSKTCVML 439

Query: 368 FE 369
            +
Sbjct: 440 LD 441


>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
          Length = 457

 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 95/385 (24%), Positives = 165/385 (42%), Gaps = 44/385 (11%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKE----DGVLSLPTFASIFDSYCGAGKYDEAVMS 169
           Y +N ++  L   GR     NA+ V+ E      V  + T+  + ++ C    Y +A+  
Sbjct: 33  YTYNTLIRGLCGRGR---TANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKL 89

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWE 228
            D M   G   D+V  N +++ IC QE +   A+EFL  +     +P+  S+ I+L+G  
Sbjct: 90  LDEMRDKGCTPDIVTYNVVVNGIC-QEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLC 148

Query: 229 KEGNVEEANKTFGEM----------------------------VERFEWNPEH-----VL 255
                E+A +  GEM                            +E  E  P++      L
Sbjct: 149 TAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSL 208

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
           +Y   L    + K++D+A+ FL +M    C+P +  ++  L  L +  +   AV+L   +
Sbjct: 209 SYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQL 268

Query: 316 VGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 375
              G    P LI YN VI  L             ++MV  G  PD +TY+ I   L +  
Sbjct: 269 KDKG--CAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCRED 326

Query: 376 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 435
           R+ +  + F ++     +P  +     I  L    E   AI+++ Y++ NG +P E++  
Sbjct: 327 RIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYT 386

Query: 436 ELLVGLRNLGRLSDVRRFAEEMLNR 460
            L+ GL   G + + R   +E+ +R
Sbjct: 387 ILIEGLAYEGLIKEARDLLDELCSR 411



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 151/334 (45%), Gaps = 9/334 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
            + ++   YCGAG+ D A      M    VE D    N+L+  +C +  +T+ AL  L+ 
Sbjct: 2   AYNAMVAGYCGAGQLDAARRLVAEMP---VEPDAYTYNTLIRGLCGR-GRTANALAVLDE 57

Query: 209 -VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            +++   PD  ++ ILLE   K    ++A K   EM  R +     ++ Y   +  + + 
Sbjct: 58  MLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEM--RDKGCTPDIVTYNVVVNGICQE 115

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
            +VD+A++FL+ +    C P    ++  L  L        A +L   M   G    PN++
Sbjct: 116 GRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCP--PNVV 173

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            +N +I  LC    V+      +Q+  +G  P+SL+YN +     K K++ +   F   M
Sbjct: 174 TFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLM 233

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
           +     P  ++  T +T L  + E ++A+E+ + + + G  P+  S N ++ GL   G+ 
Sbjct: 234 VSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKT 293

Query: 448 SDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
            +      EM+++ +    +T   +      E R
Sbjct: 294 KEALELLNEMVSKGLQPDIITYSTIAAGLCREDR 327


>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 95/405 (23%), Positives = 180/405 (44%), Gaps = 43/405 (10%)

Query: 76  GIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQ---RLSPYAWNLMVDVLGKNGRFEQM 132
           G++PT +  + +L L      +   +  +A   +   + S Y +N+M++VL K G+ ++ 
Sbjct: 181 GVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKA 240

Query: 133 WNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
            + V  M+  GV  ++ T+ +I   YC +G+ + A      M    +E D     SL+S 
Sbjct: 241 KDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISG 300

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           +C+Q      +  F   V+K + P    +  L++G+  +GN++ A+    EM+++   +P
Sbjct: 301 MCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKK-GISP 359

Query: 252 EHVLAYETFLITLIRGKQVDEA---LK--------------------FLRVMKGENCF-- 286
             +  Y + +  L   ++ DEA   +K                    + R    +  F  
Sbjct: 360 T-MSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLL 418

Query: 287 ----------PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLL 336
                     PT K +++ L +L K N    A  L+  +   G  ++P++IM+NA+I   
Sbjct: 419 HDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEG--VLPDVIMFNALIDGH 476

Query: 337 CNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 396
           C+N +V   F     M      PD +T+N I +   +  +V E  + F EM +   +P  
Sbjct: 477 CSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDH 536

Query: 397 LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 441
           ++  T I+      + + A  + N +L+ G  P   + N L+ GL
Sbjct: 537 ISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGL 581



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 72/321 (22%), Positives = 130/321 (40%), Gaps = 4/321 (1%)

Query: 143 GVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRA 202
           G  S   F  +  S C   + DEA   F  M   GV   +   NSLLS   +     +  
Sbjct: 147 GFKSSIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAW 206

Query: 203 LEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI 262
           + +    +  +     +F I++    KEG +++A    G M E     P +++ Y T + 
Sbjct: 207 VLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHM-ETSGVKP-NIVTYNTIVH 264

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL 322
                 +V+ A   L  MK +   P    + + +  + K      A ++++ MV  G  L
Sbjct: 265 GYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKG--L 322

Query: 323 MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
            P+ ++YN +I   CN  ++D    + D+M+  G  P   TYN +   L   +R  E E 
Sbjct: 323 RPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAEC 382

Query: 383 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 442
              E+ +    P  +     I         + A  + + +L +GI P + +   LL  L 
Sbjct: 383 MIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLS 442

Query: 443 NLGRLSDVRRFAEEMLNRRIL 463
              R+ +     +++ +  +L
Sbjct: 443 KKNRMKEADDLFKKITSEGVL 463



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 87/457 (19%), Positives = 194/457 (42%), Gaps = 20/457 (4%)

Query: 52  SARIICEILAHASSDDIESALACTGII-----PTPDLVHEVLQ--LSYDSPSSAVDFFRW 104
           S +++ + L H      ++   C  I+     P+P     +L+  L   + +S  + F +
Sbjct: 79  SPQVVLDFLNHFHHKLSDARTLCLAIVIVARLPSPKPALHLLKQALGGGTTNSIREIFEF 138

Query: 105 AGRGQRLSPYAWNLMVDVLGKN----GRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
               +    +  +++ D L K+     R ++ +     MKE GVL ++ T  S+   +  
Sbjct: 139 LAASRDRLGFKSSIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLK 198

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGD 218
             + + A + +  M    ++  V   N +++ +C+ E +  +A +F+  ++   V P+  
Sbjct: 199 LNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCK-EGKLKKAKDFVGHMETSGVKPNIV 257

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++  ++ G+   G VE A+     M +R +  P+    Y + +  + +  +++EA K   
Sbjct: 258 TYNTIVHGYCSSGRVEAADAILTTM-KRQKIEPDS-FTYGSLISGMCKQGRLEEASKIFE 315

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            M  +   P+   ++  +D      +   A    D M+  G +  P +  YN++I  L  
Sbjct: 316 EMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGIS--PTMSTYNSLIHALFM 373

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
               D       ++   G  PD++TYN++     +     +      EM+ +  +PT   
Sbjct: 374 EQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKT 433

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
             + + +L   +  + A +++  I   G+LP     N L+ G  +   +       ++M 
Sbjct: 434 YTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKDMD 493

Query: 459 NRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLERR 493
             ++   EVT + + +    E +    R++FD ++RR
Sbjct: 494 RMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRR 530



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 133/336 (39%), Gaps = 44/336 (13%)

Query: 98  AVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           A D      + Q++ P  + +  ++  + K GR E+       M + G+  S   + ++ 
Sbjct: 274 AADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLI 333

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIV 213
           D +C  G  D A    D M   G+   +   NSL+ A+   E +T  A   +  ++ K +
Sbjct: 334 DGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALF-MEQRTDEAECMIKEIQEKGI 392

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
            PD  ++ IL+ G+ +  N ++A     EM+      P     Y + L  L +  ++ EA
Sbjct: 393 SPDAITYNILINGYCRCANAKKAFLLHDEMLAS-GIKPTKK-TYTSLLHVLSKKNRMKEA 450

Query: 274 LKFLRVMKGENCFPTLKFFSNALDI------------LVKLNDST--------------- 306
               + +  E   P +  F+  +D             L+K  D                 
Sbjct: 451 DDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQG 510

Query: 307 --------HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAF 358
                    A +L+D M   G  + P+ I +N +I       D+ + FR  ++M+  G  
Sbjct: 511 HCREGKVEEARELFDEMKRRG--IKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFN 568

Query: 359 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
           P  LTYN + + L KN+     E+   EM+     P
Sbjct: 569 PTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTP 604


>gi|357442157|ref|XP_003591356.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480404|gb|AES61607.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 518

 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 93/418 (22%), Positives = 189/418 (45%), Gaps = 15/418 (3%)

Query: 63  ASSDDIESALACTGIIPTPDLVHEVLQ---LSYDSPSSAVDFFRWAGR--GQRLSPYAWN 117
           +S + ++ +L  T I  + +L+ +VL+     + +P+  ++FFR+ GR  G   + Y+ +
Sbjct: 39  SSPETLKQSLKSTQIFLSNELIDQVLKRVRFGHANPNQTLEFFRYTGRRKGFYHTAYSLD 98

Query: 118 LMVDVLGKNGRFEQMWNAV--RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
            M+ +LG++  F+ +W  +     K+  V++  T   +           + V +F     
Sbjct: 99  TMLYILGRSRMFDHVWELLIEARRKDQNVITPRTVMVVLGRVAKVCSVRQTVETFRKFKK 158

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEE 235
              +  V   N+LL  +C QE   + A    + +K    P+  +F ILL GW+   NVE+
Sbjct: 159 IVPDYGVNCFNALLRTLC-QEKSMTDARNVYHSLKHNFRPNLQTFNILLSGWK---NVED 214

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
           A     EM E     P+ V+ Y + +    +G+++++A K    M+ ++  P +  +++ 
Sbjct: 215 AELFVNEMKE-MGVEPD-VVTYNSLVDVYCKGREIEKAYKVFDEMREKDLSPDVITYTSV 272

Query: 296 LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
           +  L  +     A  +   M   G  + P++  YNA I   C    +   F   D+MV  
Sbjct: 273 IGGLGLVGQPDKARDVLKEMKEYG--VYPDVPAYNAAIRNYCIAKRLGIAFELVDEMVNK 330

Query: 356 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 415
           G  P++ TYN+ F     +  +      +  M+     P   +C   I +    ++ E+A
Sbjct: 331 GLSPNATTYNLFFRVFYWSNDLQSSWNLYKRMMGEGCLPYTQSCMFLIRLFKRHEKMEMA 390

Query: 416 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 473
           +++W  ++E G       ++ L   L ++G+L +  +   EM+ +      V+  ++K
Sbjct: 391 LQLWGEMVEKGFGSYTLVSDVLFDMLCDMGKLMEAEKCFLEMIEKGQRPSNVSFKRIK 448



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 81/196 (41%), Gaps = 12/196 (6%)

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
           G NCF  L      L  L +    T A  ++     +  N  PNL  +N    LL    +
Sbjct: 164 GVNCFNAL------LRTLCQEKSMTDARNVYH---SLKHNFRPNLQTFNI---LLSGWKN 211

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
           V++   F ++M   G  PD +TYN + +   K + + +  K F EM + +  P  +   +
Sbjct: 212 VEDAELFVNEMKEMGVEPDVVTYNSLVDVYCKGREIEKAYKVFDEMREKDLSPDVITYTS 271

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461
            I  L    +P+ A ++   + E G+ P   + N  +       RL       +EM+N+ 
Sbjct: 272 VIGGLGLVGQPDKARDVLKEMKEYGVYPDVPAYNAAIRNYCIAKRLGIAFELVDEMVNKG 331

Query: 462 ILIYEVTMHKLKKAFY 477
           +     T +   + FY
Sbjct: 332 LSPNATTYNLFFRVFY 347


>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 140/336 (41%), Gaps = 4/336 (1%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           SL TF ++ +  C  G+  EA +    +  +    +     SL+   CR  N       F
Sbjct: 201 SLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMF 260

Query: 206 LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
              VK   DP+  +++ L+ G   EG +EEA     EMV++    P  V  Y   L++L 
Sbjct: 261 DRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQK-GIEPT-VYTYTIPLVSLC 318

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN 325
                 EA++ L  MK   C P ++ F+  +  L +      A+ L+  M+  G  L+P 
Sbjct: 319 DAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADG--LVPT 376

Query: 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 385
            + YNA+I  LC     +  F  F  M+ HG+ P + TYN I +C      + +    F 
Sbjct: 377 TVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFD 436

Query: 386 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
           +M+K    P  +   T I           A+ +   +  NG+ P   +  EL+ G    G
Sbjct: 437 KMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGG 496

Query: 446 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
           +L         M+   I    VT   +   ++N ++
Sbjct: 497 KLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAK 532



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/348 (20%), Positives = 151/348 (43%), Gaps = 8/348 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T++++ +  C  G+ +EA+   + M   G+E  V      L ++C     +S A+E L +
Sbjct: 274 TYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLC-DAGCSSEAVELLGK 332

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           +KK    P+  +F  L+ G  ++G  E A   + +M+   +      + Y   +  L   
Sbjct: 333 MKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLA--DGLVPTTVTYNALINQLCVE 390

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
            + + A    + M      P+ + ++  +     + D   A+ ++D M+  G +  PN+I
Sbjct: 391 GRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSS--PNVI 448

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            YN +I   C   +++N  R  + M  +G  PD+ TY  +     +  ++      F+ M
Sbjct: 449 TYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGM 508

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
           +++   P  +     I    +  + + A+ ++  ++E+G LP   + N ++ G      +
Sbjct: 509 MEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSI 568

Query: 448 SDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS--MRDIFDSLERR 493
           S+   F  +M+ + +L   +T            R+     IF  +E+R
Sbjct: 569 SEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKR 616



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/348 (20%), Positives = 149/348 (42%), Gaps = 5/348 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G   + Y + + +  L   G   +    +  MK+ G + ++ TF ++       GK++ 
Sbjct: 301 KGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEI 360

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A+  +  M   G+    V  N+L++ +C +    +    F   +     P   ++  +++
Sbjct: 361 AIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIK 420

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
            +   G++++A   F +M++    +  +V+ Y T +    +   ++ A++ L +MKG   
Sbjct: 421 CFCLMGDIQKAMVIFDKMLK--AGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGL 478

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P    ++  +    +     HA  L+  M+  G +  PN + Y A+I    N   VD+ 
Sbjct: 479 KPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGIS--PNHVTYTAIIDGYFNLAKVDDA 536

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
              F +MV  G  P S TYN++     K   + E E F  +M+K    P  +   + I  
Sbjct: 537 LALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDG 596

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 453
           L       +A +I++ + +    P   + + L+ GL   GR  D   +
Sbjct: 597 LCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMY 644



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 118/281 (41%), Gaps = 5/281 (1%)

Query: 203 LEFLNRV--KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF 260
           +  LNR+   ++  P      ++++    EG V+   +   E+  ++++    + ++ T 
Sbjct: 115 VSMLNRLVRDRLFAPADHVRILMIKSCRNEGEVKRVTQFLSEINSKYDFGYT-LCSFTTL 173

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF 320
           LI L +   VD A      M      P+L  F+  ++IL K      A  +   +    +
Sbjct: 174 LIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHI--FRY 231

Query: 321 NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEV 380
           +  PN   Y ++I   C N ++D  F  FD+MV  G  P+S+TY+ +   L    R+ E 
Sbjct: 232 DAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEA 291

Query: 381 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 440
                EM++   +PT       +  L DA     A+E+   + + G +P   +   L+ G
Sbjct: 292 MDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISG 351

Query: 441 LRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
           L   G+         +ML   ++   VT + L      E R
Sbjct: 352 LSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGR 392



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 73/362 (20%), Positives = 140/362 (38%), Gaps = 47/362 (12%)

Query: 107 RGQRLSPYAWNL--MVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           +G  L P AW    ++    + G+ E   +    M E G+  +  T+ +I D Y    K 
Sbjct: 474 KGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKV 533

Query: 164 DEAVMSF-----------------------------------DVMSMHGVEQDVVAVNSL 188
           D+A+  F                                     M   G+  +V+   S 
Sbjct: 534 DDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSF 593

Query: 189 LSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF 247
           +  +CR   +T  A +  + + K+   P+  +++ L+ G  +EG  E+A + +  +    
Sbjct: 594 IDGLCRN-GRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDA-EMYNLLARLT 651

Query: 248 EWNPE-HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
            +  E +V  Y T +  L    +  EA + +  M+ +   P+ + +   L    K     
Sbjct: 652 HYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVE 711

Query: 307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM 366
            A+ ++  M  +GF L  +L  Y A+I  LC  + ++     F  M+      D + + +
Sbjct: 712 SALNIFYSMDTLGFQL--HLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVAWTV 769

Query: 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 426
           + + L+K        K  H M   E +   LN  T + +  +    + AI+I     + G
Sbjct: 770 LLDGLLKEGETDLCLKLLHVM---ESRNCTLNFQTYVMLARELSALDCAIKIPQISQQLG 826

Query: 427 IL 428
           I+
Sbjct: 827 IV 828


>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 140/336 (41%), Gaps = 4/336 (1%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           SL TF ++ +  C  G+  EA +    +  +    +     SL+   CR  N       F
Sbjct: 201 SLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMF 260

Query: 206 LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
              VK   DP+  +++ L+ G   EG +EEA     EMV++    P  V  Y   L++L 
Sbjct: 261 DRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQK-GIEPT-VYTYTIPLVSLC 318

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN 325
                 EA++ L  MK   C P ++ F+  +  L +      A+ L+  M+  G  L+P 
Sbjct: 319 DAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADG--LVPT 376

Query: 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 385
            + YNA+I  LC     +  F  F  M+ HG+ P + TYN I +C      + +    F 
Sbjct: 377 TVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFD 436

Query: 386 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
           +M+K    P  +   T I           A+ +   +  NG+ P   +  EL+ G    G
Sbjct: 437 KMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGG 496

Query: 446 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
           +L         M+   I    VT   +   ++N ++
Sbjct: 497 KLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAK 532



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/348 (20%), Positives = 151/348 (43%), Gaps = 8/348 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T++++ +  C  G+ +EA+   + M   G+E  V      L ++C     +S A+E L +
Sbjct: 274 TYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLC-DAGCSSEAVELLGK 332

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           +KK    P+  +F  L+ G  ++G  E A   + +M+   +      + Y   +  L   
Sbjct: 333 MKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLA--DGLVPTTVTYNALINQLCVE 390

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
            + + A    + M      P+ + ++  +     + D   A+ ++D M+  G +  PN+I
Sbjct: 391 GRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSS--PNVI 448

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            YN +I   C   +++N  R  + M  +G  PD+ TY  +     +  ++      F+ M
Sbjct: 449 TYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGM 508

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
           +++   P  +     I    +  + + A+ ++  ++E+G LP   + N ++ G      +
Sbjct: 509 MEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSI 568

Query: 448 SDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS--MRDIFDSLERR 493
           S+   F  +M+ + +L   +T            R+     IF  +E+R
Sbjct: 569 SEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKR 616



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/348 (20%), Positives = 149/348 (42%), Gaps = 5/348 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G   + Y + + +  L   G   +    +  MK+ G + ++ TF ++       GK++ 
Sbjct: 301 KGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEI 360

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A+  +  M   G+    V  N+L++ +C +    +    F   +     P   ++  +++
Sbjct: 361 AIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIK 420

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
            +   G++++A   F +M++    +  +V+ Y T +    +   ++ A++ L +MKG   
Sbjct: 421 CFCLMGDIQKAMVIFDKMLK--AGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGL 478

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P    ++  +    +     HA  L+  M+  G +  PN + Y A+I    N   VD+ 
Sbjct: 479 KPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGIS--PNHVTYTAIIDGYFNLAKVDDA 536

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
              F +MV  G  P S TYN++     K   + E E F  +M+K    P  +   + I  
Sbjct: 537 LALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDG 596

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 453
           L       +A +I++ + +    P   + + L+ GL   GR  D   +
Sbjct: 597 LCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMY 644



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 118/281 (41%), Gaps = 5/281 (1%)

Query: 203 LEFLNRV--KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF 260
           +  LNR+   ++  P      ++++    EG V+   +   E+  ++++    + ++ T 
Sbjct: 115 VSMLNRLVRDRLFAPADHVRILMIKSCRNEGEVKRVTQFLSEINSKYDFGYT-LCSFTTL 173

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF 320
           LI L +   VD A      M      P+L  F+  ++IL K      A  +   +    +
Sbjct: 174 LIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHI--FRY 231

Query: 321 NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEV 380
           +  PN   Y ++I   C N ++D  F  FD+MV  G  P+S+TY+ +   L    R+ E 
Sbjct: 232 DAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEA 291

Query: 381 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 440
                EM++   +PT       +  L DA     A+E+   + + G +P   +   L+ G
Sbjct: 292 MDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISG 351

Query: 441 LRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
           L   G+         +ML   ++   VT + L      E R
Sbjct: 352 LSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGR 392



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 71/352 (20%), Positives = 136/352 (38%), Gaps = 47/352 (13%)

Query: 107 RGQRLSPYAWNL--MVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           +G  L P AW    ++    + G+ E   +    M E G+  +  T+ +I D Y    K 
Sbjct: 474 KGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKV 533

Query: 164 DEAVMSF-----------------------------------DVMSMHGVEQDVVAVNSL 188
           D+A+  F                                     M   G+  +V+   S 
Sbjct: 534 DDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSF 593

Query: 189 LSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF 247
           +  +CR   +T  A +  + + K+   P+  +++ L+ G  +EG  E+A + +  +    
Sbjct: 594 IDGLCRN-GRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDA-EMYNLLARLT 651

Query: 248 EWNPE-HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
            +  E +V  Y T +  L    +  EA + +  M+ +   P+ + +   L    K     
Sbjct: 652 HYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVE 711

Query: 307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM 366
            A+ ++  M  +GF L  +L  Y A+I  LC  + ++     F  M+      D + + +
Sbjct: 712 SALNIFYSMDTLGFQL--HLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVVWTV 769

Query: 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 418
           + + L+K        K  H M   E +   LN  T + +  +    + AI+I
Sbjct: 770 LLDGLLKEGETDLCLKLLHVM---ESRNCTLNFQTYVMLARELSALDCAIKI 818


>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
          Length = 691

 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 93/379 (24%), Positives = 166/379 (43%), Gaps = 11/379 (2%)

Query: 102 FRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGA 160
            R AG G  +  Y  N +V    + G  +     V +M + G+  +L TF S+ +  C A
Sbjct: 176 MRGAGCGPNVVTY--NTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKA 233

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSF 220
           GK ++A   FD M   G+  D V+ N+L+   C+          F    +K + PD  +F
Sbjct: 234 GKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTF 293

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
             L+    K GN+E A     +M ER     E  + +   +    +   +D+AL  +R M
Sbjct: 294 TSLIHVMCKAGNLEWAVTLVRQMRERGLQMNE--VTFTALIDGFCKKGFLDDALLAVRGM 351

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
           +     P++  ++  ++    +     A +L   M   G  L P+++ Y+ +I   C N 
Sbjct: 352 RQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKG--LKPDVVTYSTIISAYCKNC 409

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
           D  + F    QM+  G  PD++TY+ +   L + KR+ +    F  MIK   QP      
Sbjct: 410 DTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYT 469

Query: 401 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           + I         E A+ + + +++ G+LP   + + L+ GL    R  + ++   ++ + 
Sbjct: 470 SLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHE 529

Query: 461 RIL----IYEVTMHKLKKA 475
             +     Y+  MH  +KA
Sbjct: 530 EPIPANTKYDALMHCCRKA 548



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 78/374 (20%), Positives = 150/374 (40%), Gaps = 55/374 (14%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG +++   +  ++D   K G  +    AVR M++  +  S+  + ++ + YC  G+ DE
Sbjct: 319 RGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDE 378

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICR------------------------------- 194
           A      M   G++ DVV  ++++SA C+                               
Sbjct: 379 ARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIR 438

Query: 195 ---QENQTSRA-LEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
              +E + S A + F N +K  + PD  ++  L++G  KEGNVE A     +MV+     
Sbjct: 439 VLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVL- 497

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT---------------LKFFSNA 295
           P+ V+ Y   +  L +  +  EA + L  +  E   P                LK     
Sbjct: 498 PD-VVTYSVLINGLSKSARAMEAQQLLFKLYHEEPIPANTKYDALMHCCRKAELKSVLAL 556

Query: 296 LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
           L           A +++  M+   +NL  +  +Y+ +I   C   +V     F  QM+  
Sbjct: 557 LKGFCMKGLMNEADKVYQSMLDRNWNL--DGSVYSVLIHGHCRAGNVMKALSFHKQMLQR 614

Query: 356 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 415
           G  P+S +   +   L +N  V E ++   +++              I + L+    +  
Sbjct: 615 GFAPNSTSTISLIRGLFENGMVVEADQVIQQLLNCCSLADAEASKALIDLNLNEGNVDAV 674

Query: 416 IEIWNYILENGILP 429
           +++ + + ++G+LP
Sbjct: 675 LDVLHGMAKDGLLP 688



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/240 (22%), Positives = 98/240 (40%), Gaps = 12/240 (5%)

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
           VLAY   L+ L     +  A +F   M  +   P +  ++  +  L        A+ +  
Sbjct: 116 VLAYNAVLLAL-SDASLTSARRFFDSMLSDGVAPNVYTYNILIRALCGRGHRKEALSILR 174

Query: 314 IMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 373
            M G G    PN++ YN ++       +VD   R    M+  G  P+ +T+N +   + K
Sbjct: 175 DMRGAGCG--PNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCK 232

Query: 374 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 433
             ++ +  K F EM++    P  ++  T +     A     A+ ++  + + GI+P   +
Sbjct: 233 AGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVT 292

Query: 434 ANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL-----KKAFYNES----RSMR 484
              L+  +   G L        +M  R + + EVT   L     KK F +++    R MR
Sbjct: 293 FTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMR 352


>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
 gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
          Length = 577

 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 98/383 (25%), Positives = 164/383 (42%), Gaps = 14/383 (3%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F   A RG  L    +  ++  L + G+  Q  +  + M   G +  + T +++ D    
Sbjct: 79  FKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSK 138

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGD 218
           AG+   AV  F  M   G+  + V  ++L+  +C+       ALE L ++KK    PD  
Sbjct: 139 AGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDC-ALEMLAQMKKAFCTPDTI 197

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++ +L++G  K G+VE A   F EM+E     P+ V  Y   +    +    D A   L 
Sbjct: 198 TYNVLIDGLCKSGDVEAARAFFDEMLEA-GCKPD-VYTYNILISGFCKAGNTDAASHSLA 255

Query: 279 VMKGEN-CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337
                N C   +  ++  +D L K      AV L + +   G    P +  YNA++  LC
Sbjct: 256 QETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCT--PTIATYNALLNGLC 313

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
               ++       ++V +G  PD +TY  + + L K KR  E  K F EM         +
Sbjct: 314 KMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTV 373

Query: 398 NCATA-ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 456
            C TA I  LL   +   A  ++  +  +G +P   + + ++ GL   GR+    R  + 
Sbjct: 374 -CYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKS 432

Query: 457 MLNRRI----LIYEVTMHKLKKA 475
           M  R +    ++Y   +H L KA
Sbjct: 433 MEARGLAPNEVVYSALIHGLCKA 455



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 93/361 (25%), Positives = 151/361 (41%), Gaps = 48/361 (13%)

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD----PDG 217
           K +EAV   + ++ +G    +   N+LL+ +C+      R  E ++ ++KIVD    PD 
Sbjct: 1   KIEEAVALMEKITANGCTPTIATYNALLNGLCKM----GRLEEAIDLLRKIVDNGCTPDV 56

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            ++  L++G  KE    EA K F EM  R        + Y   +  L++  ++ +A    
Sbjct: 57  VTYTSLIDGLGKEKRSFEAYKLFKEMALR--GLALDTVCYTALIRELLQTGKIPQASSVY 114

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337
           + M    C P +   S  +D L K      AV+++  M   G  L PN ++Y+A+I  LC
Sbjct: 115 KTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARG--LAPNEVVYSALIHGLC 172

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP--- 394
               +D       QM      PD++TYN++ + L K+  V     FF EM++   +P   
Sbjct: 173 KARKMDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVY 232

Query: 395 -------------------------TPLNCAT----AITMLLD--ADEPEI--AIEIWNY 421
                                    T +N  T      T ++D  A   +I  A+ +   
Sbjct: 233 TYNILISGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEK 292

Query: 422 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
           I  NG  P  A+ N LL GL  +GRL +      ++++       VT   L      E R
Sbjct: 293 ITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKR 352

Query: 482 S 482
           S
Sbjct: 353 S 353



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 144/327 (44%), Gaps = 14/327 (4%)

Query: 74  CTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMW 133
           CT    T +++ + L  S D  ++   F      G +   Y +N+++    K G  +   
Sbjct: 192 CTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAAS 251

Query: 134 N--AVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
           +  A         + + T+ +I D      K +EAV   + ++ +G    +   N+LL+ 
Sbjct: 252 HSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNG 311

Query: 192 ICRQENQTSRALEFLNRVKKIVD----PDGDSFAILLEGWEKEGNVEEANKTFGEMVERF 247
           +C+      R  E ++ ++KIVD    PD  ++  L++G  KE    EA K F EM  R 
Sbjct: 312 LCKM----GRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALR- 366

Query: 248 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 307
                  + Y   +  L++  ++ +A    + M    C P +   S  +D L K      
Sbjct: 367 -GLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGA 425

Query: 308 AVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMI 367
           AV+++  M   G  L PN ++Y+A+I  LC    +D       QM      PD++TYN++
Sbjct: 426 AVRIFKSMEARG--LAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNIL 483

Query: 368 FECLIKNKRVHEVEKFFHEMIKNEWQP 394
            + L K+  V     FF EM++   +P
Sbjct: 484 IDGLCKSGDVEAARAFFDEMLEAGCKP 510



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 87/210 (41%), Gaps = 5/210 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F   A RG  L    +  ++  L + G+  Q  +  + M   G +  + T +++ D    
Sbjct: 360 FKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSK 419

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGD 218
           AG+   AV  F  M   G+  + V  ++L+  +C+       ALE L ++KK    PD  
Sbjct: 420 AGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDC-ALEMLAQMKKAFCTPDTI 478

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++ IL++G  K G+VE A   F EM+E     P+ V  Y   +    +    D A     
Sbjct: 479 TYNILIDGLCKSGDVEAARAFFDEMLEA-GCKPD-VYTYNILISGFCKAGNTDAACGVFD 536

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHA 308
            M    C   +  +   +  L K    T A
Sbjct: 537 DMSSSRCSANVVTYGALISGLCKRRQLTKA 566



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 62/279 (22%), Positives = 113/279 (40%), Gaps = 44/279 (15%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N +++ L K GR E+  + +R + ++G    + T+ S+ D      +  EA   F  M+
Sbjct: 305 YNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMA 364

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD----PDGDSFAILLEGWEKE 230
           + G+  D V   +L+    R+  QT +  +  +  K +      PD  + + +++G  K 
Sbjct: 365 LRGLALDTVCYTALI----RELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKA 420

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           G +  A + F  M  R    P  V+ Y   +  L + +++D AL+ L  MK   C P   
Sbjct: 421 GRIGAAVRIFKSMEAR-GLAPNEVV-YSALIHGLCKARKMDCALEMLAQMKKAFCTPDTI 478

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIG-------FNLM-------------------- 323
            ++  +D L K  D   A   +D M+  G       +N++                    
Sbjct: 479 TYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDM 538

Query: 324 ------PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG 356
                  N++ Y A+I  LC    +     +F  M   G
Sbjct: 539 SSSRCSANVVTYGALISGLCKRRQLTKASLYFQHMKERG 577



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/232 (20%), Positives = 95/232 (40%), Gaps = 9/232 (3%)

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           +++EA+  +  +    C PT+  ++  L+ L K+     A+ L   +V  G    P+++ 
Sbjct: 1   KIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCT--PDVVT 58

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           Y ++I  L         ++ F +M   G   D++ Y  +   L++  ++ +    +  M 
Sbjct: 59  YTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMT 118

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
            +   P  +  +T I  L  A     A+ I+  +   G+ P E   + L+ GL    ++ 
Sbjct: 119 SHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMD 178

Query: 449 DVRRFAEEM----LNRRILIYEVTMHKLKKAFYNESRSMRDIFDS-LERRCK 495
                  +M         + Y V +  L K+   +  + R  FD  LE  CK
Sbjct: 179 CALEMLAQMKKAFCTPDTITYNVLIDGLCKS--GDVEAARAFFDEMLEAGCK 228


>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
          Length = 552

 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 159/351 (45%), Gaps = 8/351 (2%)

Query: 107 RGQRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL--SLPTFASIFDSYCGAGK 162
           RG   +P A  +N +V    + G  +     V +M+E+G    +L TF S+ +  C AG+
Sbjct: 37  RGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGR 96

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
            + A   FD M   G+  DVV+ N+LLS  C+          F    ++ + PD  +F  
Sbjct: 97  MEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTS 156

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+    K GN+E+A     +M ER     E  + +   +    +   +D+AL  +  M+ 
Sbjct: 157 LIHATCKAGNLEQAVALVAQMRERGLRMNE--VTFTALIDGFCKKGFLDDALLAVEEMRK 214

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
               P++  ++  ++   KL     A +L   M      + P+++ Y+ +I   C   ++
Sbjct: 215 CGIQPSVVCYNALINGYCKLGRMDLARELIREMEAK--RVKPDVVTYSTIISGYCKVGNL 272

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
           D+ F+   +M+  G  PD++TY+ +   L + KR+++  + F  M++   QP      T 
Sbjct: 273 DSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTL 332

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 453
           I         E A+ + + ++  G+LP   + + L+ GL    R  +  R 
Sbjct: 333 IDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRL 383



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 126/276 (45%), Gaps = 44/276 (15%)

Query: 125 KNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV 183
           K G  EQ    V  M+E G+ ++  TF ++ D +C  G  D+A+++ + M   G++  VV
Sbjct: 163 KAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVV 222

Query: 184 AVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
             N+L++  C+   +   A E +  ++ K V PD  +++ ++ G+ K GN++ A +   +
Sbjct: 223 CYNALINGYCKL-GRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQK 281

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
           M+++       VL       +LIRG   ++                            +L
Sbjct: 282 MLKK------GVLPDAITYSSLIRGLCEEK----------------------------RL 307

Query: 303 NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSL 362
           ND   A +L++ M+ +G  + P+   Y  +I   C   +V+      D+M+  G  PD +
Sbjct: 308 ND---ACELFENMLQLG--VQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVV 362

Query: 363 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
           TY+++   L K+ R  E  +   ++   +  P P N
Sbjct: 363 TYSVLINGLSKSARTKEAHRLLFKLYHED--PVPDN 396



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 88/205 (42%), Gaps = 1/205 (0%)

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
           +V  Y   +  L    +++EA+  +  M+G  C P    ++  +    +  +   A ++ 
Sbjct: 9   NVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVV 68

Query: 313 DIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 372
            +M   G N  PNL+ +N+++  LC    ++   + FD+MV  G  PD ++YN +     
Sbjct: 69  SLMREEG-NAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYC 127

Query: 373 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 432
           K   +HE    F EM +    P  +   + I     A   E A+ +   + E G+   E 
Sbjct: 128 KVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEV 187

Query: 433 SANELLVGLRNLGRLSDVRRFAEEM 457
           +   L+ G    G L D     EEM
Sbjct: 188 TFTALIDGFCKKGFLDDALLAVEEM 212



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 123/323 (38%), Gaps = 40/323 (12%)

Query: 173 MSMHGVEQDVVAVNSLLSAIC---RQENQTS-------------------------RA-- 202
           M  HGV  +V   N L+ A+C   R E                             RA  
Sbjct: 1   MVRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 60

Query: 203 LEFLNRVKKIVDPDGD------SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
           L+   RV  ++  +G+      +F  ++ G  K G +E A K F EMV   E     V++
Sbjct: 61  LDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVR--EGLAPDVVS 118

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
           Y T L    +   + E+L     M      P +  F++ +    K  +   AV L   M 
Sbjct: 119 YNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMR 178

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
             G  +  N + + A+I   C    +D+     ++M   G  P  + YN +     K  R
Sbjct: 179 ERGLRM--NEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGR 236

Query: 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 436
           +    +   EM     +P  +  +T I+        + A ++   +L+ G+LP   + + 
Sbjct: 237 MDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSS 296

Query: 437 LLVGLRNLGRLSDVRRFAEEMLN 459
           L+ GL    RL+D     E ML 
Sbjct: 297 LIRGLCEEKRLNDACELFENMLQ 319



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 64/156 (41%), Gaps = 1/156 (0%)

Query: 321 NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEV 380
            + PN+  YN ++  LC    ++        M   G  P+++TYN +     +   +   
Sbjct: 5   GVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGA 64

Query: 381 EKFFHEMI-KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 439
           E+    M  +   +P  +   + +  L  A   E A ++++ ++  G+ P   S N LL 
Sbjct: 65  ERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLS 124

Query: 440 GLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKA 475
           G   +G L +      EM  R ++   VT   L  A
Sbjct: 125 GYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHA 160


>gi|224107983|ref|XP_002314677.1| predicted protein [Populus trichocarpa]
 gi|222863717|gb|EEF00848.1| predicted protein [Populus trichocarpa]
          Length = 481

 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 102/412 (24%), Positives = 181/412 (43%), Gaps = 41/412 (9%)

Query: 64  SSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVD 121
           S D +  AL  +GI  T DLV ++L+   +   +A+  F WA    G   +P  ++L+VD
Sbjct: 48  SEDAVVKALDESGINATNDLVSQLLERFSNQWITALGVFIWAKNQTGYVHTPRLYDLVVD 107

Query: 122 VLGKNGRFEQMWNAVRVMKE-DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQ 180
           +LGK  +F  MW  V  M E +G +S  T + +      +G Y + +     +  + V++
Sbjct: 108 ILGKCKKFGIMWKVVNEMNELNGQVSFSTMSIVVRRLASSGMYKDVIDVLRGLEKYRVKK 167

Query: 181 DVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTF 240
           D VA+N ++ A+ +Q         FL   K  +  D  SF IL+ G+ +   +++A KT 
Sbjct: 168 DTVALNMVMHALAKQGGAKDAYSVFL-EFKDSITLDSHSFNILIHGYCEARMLDDARKTM 226

Query: 241 GEMVERFEWNPE----------------------------------HVLAYETFLITLIR 266
            EM E+  + P+                                   V+AY  ++  L +
Sbjct: 227 EEM-EKHGFRPDASSYTCFIKAYCKQKDFRNVEVILNEMGEKGCEPDVIAYSIYIRALGK 285

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNL 326
            ++++EAL+    M   +C P  KFFS  + +L +      A  +++ M   G +   +L
Sbjct: 286 ARKINEALEVYEKMNKNSCKPDAKFFSTLIYVLGRSGRLNDAWYVFEDMENHGVS--RDL 343

Query: 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 386
             YNA+I   C N   ++  +  ++M  +   PD  TY  + +   K K +  ++     
Sbjct: 344 WTYNAMIYHACANRQGNSALKLLERMEVNSCKPDLETYQPLLKMCCKMKDMKVLKFLLSH 403

Query: 387 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 438
           M  N  +      A  I  L ++ + E A   +   + NGI+P + +   LL
Sbjct: 404 MFNNNVRIDLSTYALLIRELAESGKLEHACFFFQDAVLNGIVPKDRTYEILL 455



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 59/134 (44%)

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           +N +I   C    +D+  +  ++M  HG  PD+ +Y    +   K K    VE   +EM 
Sbjct: 206 FNILIHGYCEARMLDDARKTMEEMEKHGFRPDASSYTCFIKAYCKQKDFRNVEVILNEMG 265

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
           +   +P  +  +  I  L  A +   A+E++  + +N   P     + L+  L   GRL+
Sbjct: 266 EKGCEPDVIAYSIYIRALGKARKINEALEVYEKMNKNSCKPDAKFFSTLIYVLGRSGRLN 325

Query: 449 DVRRFAEEMLNRRI 462
           D     E+M N  +
Sbjct: 326 DAWYVFEDMENHGV 339


>gi|357491947|ref|XP_003616261.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355517596|gb|AES99219.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 149/324 (45%), Gaps = 6/324 (1%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN-QTSRALEFLNR 208
           F  +   +C  G    A M FD +S  G+   VV+ N+L+S  CR +N +    L+ +  
Sbjct: 229 FNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSKNVEEGFVLKSVME 288

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
            ++I  PD  +++ L+ G  KE  VEEAN  F EM E     P  V  + T +    +  
Sbjct: 289 SERI-SPDVFTYSALINGLCKESRVEEANGLFDEMCE-MGLVPNGV-TFTTLIDGQCKHG 345

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           ++D AL+   +MK     P L  ++  ++ L +  D   A +L + M+G GF   P+ I 
Sbjct: 346 KIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFK--PDKIT 403

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           +  ++   C + D+D+     D+MV  G   D + +  +   L ++ RV + E+   +M+
Sbjct: 404 FTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRDGRVRDAERMLKDML 463

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
               +P        I       + ++  ++   +  +G +P   + N L+ G    G++ 
Sbjct: 464 SAGHKPDDPTYTMVIDCFCKKGDVKMGAKLLKEMQRDGRVPGVVTYNALMNGFCKQGQMK 523

Query: 449 DVRRFAEEMLNRRILIYEVTMHKL 472
           + +     MLN  ++  ++T + L
Sbjct: 524 NAKMLLHAMLNMEVVPNDITFNIL 547



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 144/315 (45%), Gaps = 5/315 (1%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  F ++  +Y  +   ++A+    ++  +     V   + LL  + +   Q     EF
Sbjct: 154 SVLVFDALIIAYTDSEFIEDAIQCLRLVKKNNFSIPVCGCDYLLRRVMKLNQQPGHCWEF 213

Query: 206 -LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
            L  +     P+   F IL+ G+ K G+V  A   F E + R    P  V+++ T +   
Sbjct: 214 YLEVLDYGYPPNVYLFNILMHGFCKIGDVMNARMVFDE-ISRRGLRPS-VVSFNTLISGY 271

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
            R K V+E      VM+ E   P +  +S  ++ L K +    A  L+D M  +G  L+P
Sbjct: 272 CRSKNVEEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMG--LVP 329

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           N + +  +I   C +  +D   R F+ M   G  PD +TYN +   L ++  + E  K  
Sbjct: 330 NGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLL 389

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
           +EMI N ++P  +   T +       + + A+EI + ++E GI   + +   L+ GL   
Sbjct: 390 NEMIGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRD 449

Query: 445 GRLSDVRRFAEEMLN 459
           GR+ D  R  ++ML+
Sbjct: 450 GRVRDAERMLKDMLS 464



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 125/265 (47%), Gaps = 9/265 (3%)

Query: 109 QRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +R+SP  + ++ +++ L K  R E+       M E G++ +  TF ++ D  C  GK D 
Sbjct: 290 ERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQCKHGKIDL 349

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILL 224
           A+ +F++M   G+  D++  N+L++ +CR +     A + LN  +     PD  +F  L+
Sbjct: 350 ALRNFEIMKDRGIRPDLITYNALINGLCR-DGDLKEARKLLNEMIGNGFKPDKITFTTLM 408

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           +G  K+G+++ A +    MVE  E      +A+   +  L R  +V +A + L+ M    
Sbjct: 409 DGCCKDGDMDSALEIKDRMVE--EGIELDDVAFTALISGLCRDGRVRDAERMLKDMLSAG 466

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
             P    ++  +D   K  D     +L   M   G   +P ++ YNA++   C    + N
Sbjct: 467 HKPDDPTYTMVIDCFCKKGDVKMGAKLLKEMQRDG--RVPGVVTYNALMNGFCKQGQMKN 524

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFE 369
                  M+     P+ +T+N++ +
Sbjct: 525 AKMLLHAMLNMEVVPNDITFNILLD 549



 Score = 45.4 bits (106), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 81/200 (40%), Gaps = 16/200 (8%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSL------PTFASIFDS 156
           R    G  L   A+  ++  L ++GR     +A R++K+  +LS       PT+  + D 
Sbjct: 426 RMVEEGIELDDVAFTALISGLCRDGRVR---DAERMLKD--MLSAGHKPDDPTYTMVIDC 480

Query: 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPD 216
           +C  G           M   G    VV  N+L++  C+Q    +  +     +   V P+
Sbjct: 481 FCKKGDVKMGAKLLKEMQRDGRVPGVVTYNALMNGFCKQGQMKNAKMLLHAMLNMEVVPN 540

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
             +F ILL+G  K G+  +     GE     ++     L  E+  I+  + K V E    
Sbjct: 541 DITFNILLDGHCKHGSSVDFKIFNGEKGLVSDYASYTALVNESIKISKDQLKSVLECPTH 600

Query: 277 LRVMKGEN-----CFPTLKF 291
           + +   +N     C  +L+F
Sbjct: 601 IGIQYRQNTDMCSCIQSLQF 620


>gi|334187687|ref|NP_197005.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635761|sp|Q9LFQ4.2|PP383_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g15010, mitochondrial; Flags: Precursor
 gi|332004721|gb|AED92104.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 572

 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 109/450 (24%), Positives = 200/450 (44%), Gaps = 18/450 (4%)

Query: 49  ISSSARIICEILAHASSD--DIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAG 106
           +S     I +++    SD  ++ + L    + P+ +LV E+L    +   +A  FF WAG
Sbjct: 93  VSEDVGKISKLVKDCGSDRKELRNKLEECDVKPSNELVVEILSRVRNDWETAFTFFVWAG 152

Query: 107 RGQRL--SPYAWNLMVDVLGKNGRFEQMWNAVRVMKE--DGVLSLPTFASIFDSYCGAGK 162
           + Q    S   ++ M+ +LGK  +F+  W  +  M++    +++  T   +   YC    
Sbjct: 153 KQQGYVRSVREYHSMISILGKMRKFDTAWTLIDEMRKFSPSLVNSQTLLIMIRKYCAVHD 212

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRA-LEFLNRVKKIVDPDGDSFA 221
             +A+ +F       +E  +    SLLSA+CR +N +    L F N+ K   D    SF 
Sbjct: 213 VGKAINTFHAYKRFKLEMGIDDFQSLLSALCRYKNVSDAGHLIFCNKDKYPFD--AKSFN 270

Query: 222 ILLEGWEKE-GNVEEANKTFGEMVERFEWNPEH-VLAYETFLITLIRGKQVDEALKFLRV 279
           I+L GW    G+  EA + + EM        +H V++Y + +    +G  +++ LK    
Sbjct: 271 IVLNGWCNVIGSPREAERVWMEM---GNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDR 327

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
           MK E   P  K ++  +  L K +  + A  L   M      + PN++ YN++I  LC  
Sbjct: 328 MKKECIEPDRKVYNAVVHALAKASFVSEARNLMKTMEEEK-GIEPNVVTYNSLIKPLCKA 386

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
              +   + FD+M+  G FP   TY+     L   + V E+     +M K   +PT    
Sbjct: 387 RKTEEAKQVFDEMLEKGLFPTIRTYHAFMRILRTGEEVFEL---LAKMRKMGCEPTVETY 443

Query: 400 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
              I  L    + +  + +W+ + E  + P  +S   ++ GL   G++ +   + +EM +
Sbjct: 444 IMLIRKLCRWRDFDNVLLLWDEMKEKTVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMKD 503

Query: 460 RRILIYEVTMHKLKKAFYNESRSMRDIFDS 489
           + +   E     ++  F  +  + + I DS
Sbjct: 504 KGMRPNENVEDMIQSWFSGKQYAEQRITDS 533


>gi|359472741|ref|XP_003631192.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Vitis vinifera]
          Length = 708

 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 91/422 (21%), Positives = 184/422 (43%), Gaps = 11/422 (2%)

Query: 76  GIIPTPDLVHEVLQLSYDSPSSAVD---FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQM 132
           G++P+   ++ VL ++       +    F     RG      ++ LMV      GR  + 
Sbjct: 184 GLVPSTQTLNCVLDVAVGMGLVEIAENMFVEMCQRGVSPDCVSFKLMVVACCNMGRVLEA 243

Query: 133 WNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +  M E G ++   T   I D++C  G  +  V  F  M   G+  +V+   +L++ 
Sbjct: 244 ERWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFTALING 303

Query: 192 ICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
           +C+Q     +A E L   V++   P+  +   L++G  K+G  E+A + F ++V    + 
Sbjct: 304 LCKQ-GSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYK 362

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P +V  Y   +    +  +++ A   L  M+ +   P    ++  +D   K+ +   A +
Sbjct: 363 P-NVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYE 421

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
           L D+M   GF+  PN+  YNA+I  LC    +D  +R  +++  HG   D +TY ++   
Sbjct: 422 LMDLMGKEGFS--PNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSV 479

Query: 371 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 430
             +    +    FF++M+K  + P   +  T I+      + + +  ++   +  G++P 
Sbjct: 480 HCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISTFCRQKQMKESERLFEEAVSLGLIPT 539

Query: 431 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFD 488
           + +   ++ G    G  S   +  + M N       +T   L      ES+    R+++D
Sbjct: 540 KKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLYD 599

Query: 489 SL 490
           ++
Sbjct: 600 AM 601


>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 602

 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 84/369 (22%), Positives = 167/369 (45%), Gaps = 10/369 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           A   ++    ++G+ ++    + +++  G +  + T+  +   YC +G+ D+A+   + M
Sbjct: 143 ACTSLIRGFCRSGKTKKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALEVLERM 202

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGN 232
           S   V  DVV  N++L ++C    +   A+E L+R +++   PD  ++ IL+E    +  
Sbjct: 203 S---VAPDVVTYNTILRSLC-DSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDSG 258

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           V +A K   EM  R +     V+ Y   +  + +  ++DEA+KFL  M    C P +   
Sbjct: 259 VGQAMKLLDEM--RKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITH 316

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  L  +        A +L   M+  G +  P+++ +N +I  LC    +       ++M
Sbjct: 317 NIILRSMCSTGRWMDAERLLSDMLRKGCS--PSVVTFNILINFLCRKRLLGRAIDVLEKM 374

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
             HG  P+SL+YN +     + K++    ++   M+     P  +   T +T L    + 
Sbjct: 375 PKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKV 434

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
           + A+EI N +   G  P+  + N ++ GL  +G+        EEM  + +    +T   L
Sbjct: 435 DAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTL 494

Query: 473 KKAFYNESR 481
            +    E +
Sbjct: 495 LRGLGREGK 503



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 91/390 (23%), Positives = 177/390 (45%), Gaps = 15/390 (3%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N+++    K+G  ++   A+ V++   V   + T+ +I  S C +GK  EA+   D  
Sbjct: 178 TYNVLIGGYCKSGEIDK---ALEVLERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQ 234

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGN 232
                  DV+    L+ A C  ++   +A++ L+ + KK   PD  ++ +L+ G  KEG 
Sbjct: 235 LQRECYPDVITYTILIEATC-NDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGR 293

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           ++EA K    M   +   P +V+ +   L ++    +  +A + L  M  + C P++  F
Sbjct: 294 LDEAIKFLNNM-PSYGCKP-NVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTF 351

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  ++ L +      A+ + + M   G   +PN + YN ++   C    +D    + + M
Sbjct: 352 NILINFLCRKRLLGRAIDVLEKMPKHG--CVPNSLSYNPLLHGFCQEKKMDRAIEYLEIM 409

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
           V  G +PD +TYN +   L K+ +V    +  +++      P  +   T I  L    + 
Sbjct: 410 VSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKT 469

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVT 468
           E A+E+   +   G+ P   + + LL GL   G++ +  +   +M    I    + Y   
Sbjct: 470 EYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTYNAI 529

Query: 469 MHKLKKAFYNESRSMRDIFDSLERRCKTSQ 498
           M  L KA    SR++  +   +E+ CK ++
Sbjct: 530 MLGLCKA-QQTSRAIDFLAYMVEKGCKPTE 558



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 144/333 (43%), Gaps = 15/333 (4%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            + ++++    +    Q    +  M++ G    + T+  + +  C  G+ DEA+   + M
Sbjct: 245 TYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNM 304

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
             +G + +V+  N +L ++C             + ++K   P   +F IL+       N 
Sbjct: 305 PSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILI-------NF 357

Query: 234 EEANKTFGEMVERFEWNPEH-----VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
               +  G  ++  E  P+H      L+Y   L    + K++D A+++L +M    C+P 
Sbjct: 358 LCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPD 417

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
           +  ++  L  L K      AV++ + +   G +  P LI YN VI  L      +     
Sbjct: 418 IVTYNTLLTALCKDGKVDAAVEILNQLSSKGCS--PVLITYNTVIDGLTKVGKTEYAVEL 475

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
            ++M   G  PD +TY+ +   L +  +V E  K FH+M     +P+ +     +  L  
Sbjct: 476 LEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCK 535

Query: 409 ADEPEIAIEIWNYILENGILPLEASANELLVGL 441
           A +   AI+   Y++E G  P EA+   L+ G+
Sbjct: 536 AQQTSRAIDFLAYMVEKGCKPTEATYTILIEGI 568



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 137/291 (47%), Gaps = 7/291 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G +     +N++++ + K GR ++    +  M   G   ++ T   I  S C  G++ +
Sbjct: 272 KGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMD 331

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILL 224
           A      M   G    VV  N L++ +CR+     RA++ L ++ K    P+  S+  LL
Sbjct: 332 AERLLSDMLRKGCSPSVVTFNILINFLCRKR-LLGRAIDVLEKMPKHGCVPNSLSYNPLL 390

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G+ +E  ++ A +    MV R  + P+ ++ Y T L  L +  +VD A++ L  +  + 
Sbjct: 391 HGFCQEKKMDRAIEYLEIMVSRGCY-PD-IVTYNTLLTALCKDGKVDAAVEILNQLSSKG 448

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
           C P L  ++  +D L K+  + +AV+L + M   G  L P++I Y+ ++  L     VD 
Sbjct: 449 CSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKG--LKPDIITYSTLLRGLGREGKVDE 506

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 395
             + F  M      P ++TYN I   L K ++      F   M++   +PT
Sbjct: 507 AIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPT 557


>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
          Length = 1245

 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 80/344 (23%), Positives = 163/344 (47%), Gaps = 5/344 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N +V+ + ++G      + +R M+E  V + + T+++I DS C  G  D A+  F  M
Sbjct: 185 TYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEM 244

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G++  VV  NSL+  +C+       AL   + V + + P+  +F +LL+ + KEG +
Sbjct: 245 ETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKL 304

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           +EAN+ + EM+ R   +P +++ Y T +       ++ EA   L +M    C P +  F+
Sbjct: 305 QEANELYKEMITR-GISP-NIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFT 362

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
           + +     +      ++++  +   G  L+ N + Y+ ++   C +  +      F +MV
Sbjct: 363 SLIKGYCMVKRVDDGMKVFRNISKRG--LVANAVTYSILVQGFCQSGKIKLAEELFQEMV 420

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
            HG  PD +TY ++ + L  N ++ +  + F ++ K++     +   T I  +    + E
Sbjct: 421 SHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVE 480

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
            A  ++  +   G+ P   +   ++ GL   G LS+      +M
Sbjct: 481 DAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKM 524



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 84/368 (22%), Positives = 167/368 (45%), Gaps = 11/368 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y  N+M++   +  +    ++ + +VMK        TF ++       GK  EAV+  D 
Sbjct: 114 YTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDR 173

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEG 231
           M  +G + DVV  NS+++ ICR    TS AL+ L ++ ++ V  D  +++ +++   ++G
Sbjct: 174 MVENGCQPDVVTYNSIVNGICRS-GDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDG 232

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            ++ A   F EM    +     V+ Y + +  L +  + ++    L+ M      P +  
Sbjct: 233 CIDAAISLFKEM--ETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVIT 290

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           F+  LD+ VK      A +L+  M+  G +  PN+I YN ++   C  + +       D 
Sbjct: 291 FNVLLDVFVKEGKLQEANELYKEMITRGIS--PNIITYNTLMDGYCMQNRLSEANNMLDL 348

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           MV +   PD +T+  + +     KRV +  K F  + K       +  +  +     + +
Sbjct: 349 MVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGK 408

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR----ILIYEV 467
            ++A E++  ++ +G+LP   +   LL GL + G+L       E++   +    I++Y  
Sbjct: 409 IKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTT 468

Query: 468 TMHKLKKA 475
            +  + K 
Sbjct: 469 IIEGMCKG 476



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 62/297 (20%), Positives = 127/297 (42%), Gaps = 7/297 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N+++DV  K G+ ++     + M   G+  ++ T+ ++ D YC   +  EA    D+M
Sbjct: 290 TFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLM 349

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
             +    D+V   SL+   C  +        F N  K+ +  +  +++IL++G+ + G +
Sbjct: 350 VRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKI 409

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           + A + F EMV      P+ V+ Y   L  L    ++++AL+    ++       +  ++
Sbjct: 410 KLAEELFQEMVSHGVL-PD-VMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYT 467

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGF-NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
             ++ + K      A   W++   +    + PN++ Y  +I  LC    +        +M
Sbjct: 468 TIIEGMCKGGKVEDA---WNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKM 524

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 409
              G  P+  TYN +    +++  +    K   EM    +     +    I MLL A
Sbjct: 525 EEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLLSA 581



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/332 (20%), Positives = 129/332 (38%), Gaps = 41/332 (12%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           SL  F+  F +     +++  +     + ++G+  ++  +N +++  CR   +T  A   
Sbjct: 77  SLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRC-CKTCFAYSV 135

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L +V K+  +PD  +F  L++G   EG V EA      MVE     P+ V+ Y + +  +
Sbjct: 136 LGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVEN-GCQPD-VVTYNSIVNGI 193

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
            R      AL  LR M+  N                                     +  
Sbjct: 194 CRSGDTSLALDLLRKMEERN-------------------------------------VKA 216

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           ++  Y+ +I  LC +  +D     F +M   G     +TYN +   L K  + ++     
Sbjct: 217 DVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLL 276

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
            +M+  E  P  +     + + +   + + A E++  ++  GI P   + N L+ G    
Sbjct: 277 KDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQ 336

Query: 445 GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
            RLS+     + M+  +     VT   L K +
Sbjct: 337 NRLSEANNMLDLMVRNKCSPDIVTFTSLIKGY 368


>gi|302763057|ref|XP_002964950.1| hypothetical protein SELMODRAFT_406577 [Selaginella moellendorffii]
 gi|300167183|gb|EFJ33788.1| hypothetical protein SELMODRAFT_406577 [Selaginella moellendorffii]
          Length = 464

 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 95/384 (24%), Positives = 176/384 (45%), Gaps = 31/384 (8%)

Query: 84  VHEVLQLSYDSPSSAVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAV-RVMK 140
           V ++LQ + D P +A+ FF+W  R    +P   A+N +++ L K GR  Q+   + R   
Sbjct: 68  VCKILQKTKD-PDAALAFFQWLTREACYNPNTVAYNCLLNTLVKAGRIYQVREMLDRKTL 126

Query: 141 EDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS 200
            + V S  T+ ++   +C AG++DEA    +     G+    + V  L S + +  ++  
Sbjct: 127 GEFVHSEFTYGTLVHGHCLAGEFDEAKRLVEEFKDTGMSPGSLVV--LHSLMLKGFSEAG 184

Query: 201 RALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM------VERFEWNPEHV 254
            A+      K+ V P+  ++  +  G  K G ++EA    G M      +    +NP  V
Sbjct: 185 LAM-----AKRGVAPNRVAYNAMARGLSKAGLLDEAFDLMGVMESAGFALTAVTFNP--V 237

Query: 255 LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314
           + +      L +  + DEA K +  M   N  P +      L+++++      A+ + D+
Sbjct: 238 VEF------LCKSGRPDEACKVMETMLLRNIEPNIL----TLNLILQAARPEEALGMTDV 287

Query: 315 MVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN 374
           MV +GF   P ++ +NA++ L CN D +D+     + M      P+ +TY+++ +   + 
Sbjct: 288 MVEMGF--CPTIVTFNALLELFCNTDQMDSATELLETMARSKCKPNFVTYSIMVQKFAEM 345

Query: 375 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 434
            R+ E   F  +++   + P  L C   +  L    E ++A      + E G     A+ 
Sbjct: 346 GRMVEARAFLEQLVVCGYAPNLLVCNAYVAGLCKTGEMDLASRFLTVMAEEGCRANTATY 405

Query: 435 NELLVGLRNLGRLSDVRRFAEEML 458
           N L+ G   LGR+ +  R  EEM+
Sbjct: 406 NSLVEGFCKLGRMDEAERVLEEMI 429



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 78/342 (22%), Positives = 129/342 (37%), Gaps = 48/342 (14%)

Query: 75  TGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWN 134
           TG+ P   +V   L L   S +        A RG   +  A+N M   L K G  ++ ++
Sbjct: 162 TGMSPGSLVVLHSLMLKGFSEAG----LAMAKRGVAPNRVAYNAMARGLSKAGLLDEAFD 217

Query: 135 AVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC 193
            + VM+  G  L+  TF  + +  C +G+ DEA    + M +  +E +++ +N +L    
Sbjct: 218 LMGVMESAGFALTAVTFNPVVEFLCKSGRPDEACKVMETMLLRNIEPNILTLNLIL---- 273

Query: 194 RQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH 253
               Q +R  E L     +V+                                  + P  
Sbjct: 274 ----QAARPEEALGMTDVMVE--------------------------------MGFCPT- 296

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
           ++ +   L       Q+D A + L  M    C P    +S  +    ++     A    +
Sbjct: 297 IVTFNALLELFCNTDQMDSATELLETMARSKCKPNFVTYSIMVQKFAEMGRMVEARAFLE 356

Query: 314 IMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 373
            +V  G+   PNL++ NA +  LC   ++D   RF   M   G   ++ TYN + E   K
Sbjct: 357 QLVVCGYA--PNLLVCNAYVAGLCKTGEMDLASRFLTVMAEEGCRANTATYNSLVEGFCK 414

Query: 374 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 415
             R+ E E+   EMI     P        I  L  A + E A
Sbjct: 415 LGRMDEAERVLEEMIAEGSLPDSTTYNVLIQGLCSAGQIEHA 456


>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 94/405 (23%), Positives = 177/405 (43%), Gaps = 43/405 (10%)

Query: 76  GIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQ---RLSPYAWNLMVDVLGKNGRFEQM 132
           G++PT +  + +L L      +   +  +A   +   + S Y +N+M++VL K G+ ++ 
Sbjct: 181 GVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKA 240

Query: 133 WNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
            + V  M+  GV  ++ T+ +I   YC +G+ + A      M    +E D     SL+S 
Sbjct: 241 KDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISG 300

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           +C+Q      +  F   V+K + P    +  L++G+  +GN++ A+    EM+++   +P
Sbjct: 301 MCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKK-GISP 359

Query: 252 EHVLAYETFLITLIRGKQVDEAL-----------------------KFLRVMKGENCF-- 286
             +  Y + +  L   ++ DEA                         + R    +  F  
Sbjct: 360 T-MSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLL 418

Query: 287 ----------PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLL 336
                     PT K +++ L +L K N    A  L+  +   G  ++P+ IM+NA+I   
Sbjct: 419 HDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEG--VLPDAIMFNALIDGH 476

Query: 337 CNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 396
           C+N +V   F     M      PD +T+N I +   +  +V E  + F EM +   +P  
Sbjct: 477 CSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDH 536

Query: 397 LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 441
           ++  T I+      + + A  + N +L+ G  P   + N L+ GL
Sbjct: 537 ISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGL 581



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 87/457 (19%), Positives = 194/457 (42%), Gaps = 20/457 (4%)

Query: 52  SARIICEILAHASSDDIESALACTGII-----PTPDLVHEVLQ--LSYDSPSSAVDFFRW 104
           S +++ + L H      ++   C  I+     P+P     +L+  L   + +S  + F +
Sbjct: 79  SPQVVLDFLNHFHHKLSDARTLCLAIVIVARLPSPKPALHLLRQALGGGTTNSIREIFEF 138

Query: 105 AGRGQRLSPYAWNLMVDVLGKN----GRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
               +    +  +++ D L K+     R ++ +     MKE GVL ++ T  S+   +  
Sbjct: 139 LAASRDRLGFKSSIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLK 198

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGD 218
             + + A + +  M    ++  V   N +++ +C+ E +  +A +F+  ++   V P+  
Sbjct: 199 LNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCK-EGKLKKAKDFVGHMETSGVKPNIV 257

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++  ++ G+   G VE A+     M +R +  P+    Y + +  + +  +++EA K   
Sbjct: 258 TYNTIVHGYCSSGRVEAADAILTTM-KRQKIEPDS-FTYGSLISGMCKQGRLEEASKIFE 315

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            M  +   P+   ++  +D      +   A    D M+  G +  P +  YN++I  L  
Sbjct: 316 EMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGIS--PTMSTYNSLIHALFM 373

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
               D       ++   G  PD++TYN++     +     +      EM+ +  +PT   
Sbjct: 374 EQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKT 433

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
             + + +L   +  + A +++  I   G+LP     N L+ G  +   +       ++M 
Sbjct: 434 YTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFELLKDMD 493

Query: 459 NRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLERR 493
             ++   EVT + + +    E +    R++FD ++RR
Sbjct: 494 RMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRR 530



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/334 (22%), Positives = 130/334 (38%), Gaps = 40/334 (11%)

Query: 98  AVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           A D      + Q++ P  + +  ++  + K GR E+       M + G+  S   + ++ 
Sbjct: 274 AADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLI 333

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIV 213
           D +C  G  D A    D M   G+   +   NSL+ A+   E +T  A   +  ++ K +
Sbjct: 334 DGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALF-MEQRTDEAECMIKEIQEKGI 392

Query: 214 DPDGDSFAILLEGWEKEGNVEEA---------------NKTFGEMVERF----------- 247
            PD  ++ IL+ G+ +  N ++A                KT+  ++              
Sbjct: 393 SPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADD 452

Query: 248 ---EWNPEHVLAYETFLITLIRG----KQVDEALKFLRVMKGENCFPTLKFFSNALDILV 300
              +   E VL        LI G      V  A + L+ M      P    F+  +    
Sbjct: 453 LFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHC 512

Query: 301 KLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPD 360
           +      A +L+D M   G  + P+ I +N +I       D+ + FR  ++M+  G  P 
Sbjct: 513 REGKVEEARELFDEMKRRG--IKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPT 570

Query: 361 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
            LTYN + + L KN+     E+   EM+     P
Sbjct: 571 VLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTP 604


>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
 gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62670, mitochondrial; Flags: Precursor
 gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
          Length = 630

 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 165/359 (45%), Gaps = 11/359 (3%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMK----EDGVLSLPTFASIFDSYC 158
           R   +G +     + ++V+ L K G  +  +N +  M+    E GVL    + +I D  C
Sbjct: 211 RMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVL---IYNTIIDGLC 267

Query: 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD 218
                D+A+  F  M   G+  +VV  +SL+S +C     +  +    + +++ ++PD  
Sbjct: 268 KYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVF 327

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           +F+ L++ + KEG + EA K + EMV+R   +P  ++ Y + +       ++DEA +   
Sbjct: 328 TFSALIDAFVKEGKLVEAEKLYDEMVKR-SIDPS-IVTYSSLINGFCMHDRLDEAKQMFE 385

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            M  ++CFP +  ++  +    K       ++++  M   G  L+ N + YN +I  L  
Sbjct: 386 FMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRG--LVGNTVTYNILIQGLFQ 443

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
             D D     F +MV  G  P+ +TYN + + L KN ++ +    F  + +++ +PT   
Sbjct: 444 AGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYT 503

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
               I  +  A + E   +++  +   G+ P   + N ++ G    G   +     +EM
Sbjct: 504 YNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEM 562



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/371 (24%), Positives = 168/371 (45%), Gaps = 42/371 (11%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y ++++++   +  +       + ++MK     ++ T +S+ + YC + +  EAV   D 
Sbjct: 117 YTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQ 176

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEG 231
           M + G + + V  N+L+  +    N+ S A+  ++R V K   PD  ++ +++ G  K G
Sbjct: 177 MFVTGYQPNTVTFNTLIHGLFLH-NKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRG 235

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-------- 283
           + + A     +M E+ +  P  VL Y T +  L + K +D+AL   + M+ +        
Sbjct: 236 DTDLAFNLLNKM-EQGKLEP-GVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVT 293

Query: 284 -----NCF----------------------PTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
                +C                       P +  FS  +D  VK      A +L+D MV
Sbjct: 294 YSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMV 353

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
               +  P+++ Y+++I   C +D +D   + F+ MV    FPD +TYN + +   K KR
Sbjct: 354 KRSID--PSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKR 411

Query: 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 436
           V E  + F EM +       +     I  L  A + ++A EI+  ++ +G+ P   + N 
Sbjct: 412 VEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNT 471

Query: 437 LLVGLRNLGRL 447
           LL GL   G+L
Sbjct: 472 LLDGLCKNGKL 482



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/352 (21%), Positives = 153/352 (43%), Gaps = 10/352 (2%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  F+ +  +     K+D  +   + M   G+  +    + L++  CR+ +Q   AL  
Sbjct: 80  SIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRR-SQLPLALAV 138

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEM-VERFEWNPEHVLAYETFLIT 263
           L ++ K+  +P+  + + LL G+     + EA     +M V  ++ N    + + T +  
Sbjct: 139 LGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPN---TVTFNTLIHG 195

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLM 323
           L    +  EA+  +  M  + C P L  +   ++ L K  D+  A  L + M      L 
Sbjct: 196 LFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQ--GKLE 253

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           P +++YN +I  LC    +D+    F +M   G  P+ +TY+ +  CL    R  +  + 
Sbjct: 254 PGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRL 313

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
             +MI+ +  P     +  I   +   +   A ++++ +++  I P   + + L+ G   
Sbjct: 314 LSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCM 373

Query: 444 LGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF--YNESRSMRDIFDSLERR 493
             RL + ++  E M+++      VT + L K F  Y       ++F  + +R
Sbjct: 374 HDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQR 425



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 79/360 (21%), Positives = 153/360 (42%), Gaps = 11/360 (3%)

Query: 92  YDSPSSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPT 149
           Y     A++ F+    +G R +   ++ ++  L   GR+      +  M E  +   + T
Sbjct: 269 YKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFT 328

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE--NQTSRALEFLN 207
           F+++ D++   GK  EA   +D M    ++  +V  +SL++  C  +  ++  +  EF+ 
Sbjct: 329 FSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFM- 387

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            V K   PD  ++  L++G+ K   VEE  + F EM +R      + + Y   +  L + 
Sbjct: 388 -VSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVG--NTVTYNILIQGLFQA 444

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
              D A +  + M  +   P +  ++  LD L K      A+ +++ +      + P + 
Sbjct: 445 GDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRS--KMEPTIY 502

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            YN +I  +C    V++ +  F  +   G  PD + YN +     +     E +  F EM
Sbjct: 503 TYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEM 562

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
            ++   P      T I   L   + E + E+   +   G    +AS   L+  + + GRL
Sbjct: 563 KEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAG-DASTIGLVTNMLHDGRL 621



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/261 (18%), Positives = 94/261 (36%), Gaps = 36/261 (13%)

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG--------- 319
           ++D+A+     M     FP++  FS  L  + K+N     + L + M  +G         
Sbjct: 61  KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYS 120

Query: 320 ------------------------FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
                                       PN++  ++++   C++  +       DQM   
Sbjct: 121 ILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT 180

Query: 356 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 415
           G  P+++T+N +   L  + +  E       M+    QP  +     +  L    + ++A
Sbjct: 181 GYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLA 240

Query: 416 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKA 475
             + N + +  + P     N ++ GL     + D     +EM  + I    VT   L   
Sbjct: 241 FNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISC 300

Query: 476 FYNESR---SMRDIFDSLERR 493
             N  R   + R + D +ER+
Sbjct: 301 LCNYGRWSDASRLLSDMIERK 321


>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1113

 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/304 (27%), Positives = 151/304 (49%), Gaps = 13/304 (4%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           R Q + P  + +N ++  L +  R +   +    M+  GV+ +  T+    D Y  +G+ 
Sbjct: 396 RKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETLGVVPTAYTYILFIDFYGKSGRS 455

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAI 222
           D+A+ +F+ M + G+  ++VA N+ L ++  +  +   A    NR+K   + PD  ++ +
Sbjct: 456 DKALETFEKMKIRGIAPNIVACNASLYSLA-EMGRLREAKVIFNRLKSNGLAPDSVTYNM 514

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           +++ + K G V+EA +   +M E  +  P+ ++   + + TL +  +VDEA K    +K 
Sbjct: 515 MMKCYSKAGQVDEAIELLSDMSEN-QCEPD-IIVINSLINTLYKAGRVDEAWKMFCRLKD 572

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
               PT+  ++  +  L K      A++L+  M G G    PN I +N ++  LC ND+V
Sbjct: 573 MKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNG--CPPNTITFNTILDCLCKNDEV 630

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
           D   +   +M      PD LT+N I   L+  KRV +    FH+M K     TP +C T 
Sbjct: 631 DLALKMLYKMTTMNCMPDVLTFNTIIHGLVIEKRVSDAIWLFHQMKK---MLTP-DCVTL 686

Query: 403 ITML 406
            T+L
Sbjct: 687 CTLL 690



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 162/350 (46%), Gaps = 10/350 (2%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G + + Y + + + VLG+ GR ++    ++ M++DG    + T+  + D+ C AGK D+A
Sbjct: 259 GLKPNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDA 318

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLE 225
           +  F  M     + D V   ++L           R  EF + ++     PD  +F IL+ 
Sbjct: 319 MELFVKMKASSHKPDRVTYITMLDKF-SDCGDLGRVKEFWSEMEADGYAPDVITFTILVN 377

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
              K GN++EA      M  R +    ++  Y T +  L+R  ++D+AL     M+    
Sbjct: 378 ALCKAGNIDEAFHLLDVM--RKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETLGV 435

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            PT   +   +D   K   S  A++ ++ M   G  + PN++  NA +  L     +   
Sbjct: 436 VPTAYTYILFIDFYGKSGRSDKALETFEKMKIRG--IAPNIVACNASLYSLAEMGRLREA 493

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
              F+++  +G  PDS+TYNM+ +C  K  +V E  +   +M +N+ +P  +   + I  
Sbjct: 494 KVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLINT 553

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 455
           L  A   + A +++  + +  + P   + N L+ G   LG+   V+R  E
Sbjct: 554 LYKAGRVDEAWKMFCRLKDMKLAPTVVTYNTLIAG---LGKEGQVQRAME 600



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 88/394 (22%), Positives = 171/394 (43%), Gaps = 45/394 (11%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           +  +L+P    +N ++  LGK G+ ++       M  +G   +  TF +I D  C   + 
Sbjct: 571 KDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKNDEV 630

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
           D A+     M+      DV+  N+++  +   E + S A+   +++KK++ PD  +   L
Sbjct: 631 DLALKMLYKMTTMNCMPDVLTFNTIIHGLV-IEKRVSDAIWLFHQMKKMLTPDCVTLCTL 689

Query: 224 LEGWEKEGNVEEANKT-------FGEMVERFEW-----------NPEHVLAYETFLI--- 262
           L G  K G +E+A K         G  V+R  W             E  + +   L+   
Sbjct: 690 LPGVVKNGLMEDAFKIAEDFVHRLGVYVDRRFWEDLMGGILTQAGTEKTILFGDRLVCGR 749

Query: 263 -------------TLIRGKQVDEALK-FLRVMKGENCFPTLKFFSNALDILVKLNDSTHA 308
                         L + KQ   A   F+R  K     PTL+ ++  ++  + +++   A
Sbjct: 750 VCKDGSVLMPIIKVLCKHKQALVAQSVFIRFTKELGVKPTLESYNFLIEGFLGVHNDEMA 809

Query: 309 VQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIF 368
             L+  M   G    P++  YN ++     +  ++ +F  ++QM+     P+++T+N+I 
Sbjct: 810 WNLFTEMKNAG--CAPDVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNIII 867

Query: 369 ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 428
             L+K+  + +    F++++  ++ PTP      +  LL +   E A E++  +++ G  
Sbjct: 868 ANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCR 927

Query: 429 PLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
           P  A  N L+ G    G+  DV   A E+  R +
Sbjct: 928 PNNAIYNILING---FGKTGDVNT-ACELFKRMV 957



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 83/389 (21%), Positives = 150/389 (38%), Gaps = 57/389 (14%)

Query: 129 FEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSL 188
           F  M N  +++K D    L T+  IF      G   +   +F  M   G   +  + N L
Sbjct: 147 FNLMQN--QIIKRD----LNTYLIIFKGLFIRGGLRQTPFAFGKMREAGFHLNAYSYNGL 200

Query: 189 L-----SAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
           +     S +CR+      ALE   R V + + P   +F+ L+    K  + E       E
Sbjct: 201 IHLLLQSGLCRE------ALEMYRRMVLEGLKPSLKTFSALMVATGKRRDTETVKSLLEE 254

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS--------- 293
           M E     P ++  Y   +  L R  ++DEA + ++ M+ + C P +  ++         
Sbjct: 255 M-ESLGLKP-NIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTA 312

Query: 294 ----NALDILVKLNDSTH----------------------AVQLWDIMVGIGFNLMPNLI 327
               +A+++ VK+  S+H                        + W  M   G+   P++I
Sbjct: 313 GKLDDAMELFVKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEFWSEMEADGY--APDVI 370

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            +  ++  LC   ++D  F   D M   G  P+  TYN +   L++  R+ +    F+ M
Sbjct: 371 TFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNM 430

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
                 PT       I     +   + A+E +  +   GI P   + N  L  L  +GRL
Sbjct: 431 ETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLAEMGRL 490

Query: 448 SDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
            + +     + +  +    VT + + K +
Sbjct: 491 REAKVIFNRLKSNGLAPDSVTYNMMMKCY 519



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 137/310 (44%), Gaps = 13/310 (4%)

Query: 136  VRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194
            +R  KE GV  +L ++  + + + G    + A   F  M   G   DV   N LL A   
Sbjct: 778  IRFTKELGVKPTLESYNFLIEGFLGVHNDEMAWNLFTEMKNAGCAPDVFTYNLLLDA--- 834

Query: 195  QENQTSRALEFLNRVKKIV----DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
               ++ +  E     ++++     P+  +  I++    K  ++++A   F ++V   +++
Sbjct: 835  -HGKSGKINELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLVSG-DFS 892

Query: 251  PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
            P     Y   L  L++  +++EA +    M    C P    ++  ++   K  D   A +
Sbjct: 893  PTPC-TYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACE 951

Query: 311  LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
            L+  MV  G  + P+L  Y +++G LC    VD+   +F+++   G + DS+ YN++ + 
Sbjct: 952  LFKRMVREG--IRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMIDG 1009

Query: 371  LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 430
            L ++ R+ E    + EM      P      + I  L  A   E A +++  +   G+ P 
Sbjct: 1010 LGRSHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEELQFIGLEPN 1069

Query: 431  EASANELLVG 440
              + N L+ G
Sbjct: 1070 VFTYNALIRG 1079



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 78/377 (20%), Positives = 159/377 (42%), Gaps = 9/377 (2%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G  L+ Y++N ++ +L ++G   +     R M  +G+  SL TF+++  +  G  +  E 
Sbjct: 189 GFHLNAYSYNGLIHLLLQSGLCREALEMYRRMVLEGLKPSLKTFSALMVA-TGKRRDTET 247

Query: 167 VMSF-DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILL 224
           V S  + M   G++ ++      +  + R   +   A   + R++     PD  ++ +L+
Sbjct: 248 VKSLLEEMESLGLKPNIYTYTICIRVLGRA-GRIDEACRIMKRMEDDGCGPDVVTYTVLI 306

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           +     G +++A + F +M +     P+ V  Y T L        +    +F   M+ + 
Sbjct: 307 DALCTAGKLDDAMELFVKM-KASSHKPDRV-TYITMLDKFSDCGDLGRVKEFWSEMEADG 364

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
             P +  F+  ++ L K  +   A  L D+M   G  ++PNL  YN +I  L   + +D+
Sbjct: 365 YAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQG--VLPNLHTYNTLISGLLRVNRLDD 422

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
               F+ M   G  P + TY +  +   K+ R  +  + F +M      P  + C  ++ 
Sbjct: 423 ALDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLY 482

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 464
            L +      A  I+N +  NG+ P   + N ++      G++ +      +M   +   
Sbjct: 483 SLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEP 542

Query: 465 YEVTMHKLKKAFYNESR 481
             + ++ L    Y   R
Sbjct: 543 DIIVINSLINTLYKAGR 559



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 61/301 (20%), Positives = 129/301 (42%), Gaps = 7/301 (2%)

Query: 164  DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAI 222
            ++ ++  D +    V +D   +  ++  +C+ +        F+   K++ V P  +S+  
Sbjct: 736  EKTILFGDRLVCGRVCKDGSVLMPIIKVLCKHKQALVAQSVFIRFTKELGVKPTLESYNF 795

Query: 223  LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
            L+EG+    N E A   F EM +     P+ V  Y   L    +  +++E  +    M  
Sbjct: 796  LIEGFLGVHNDEMAWNLFTEM-KNAGCAPD-VFTYNLLLDAHGKSGKINELFELYEQMIC 853

Query: 283  ENCFPTLKFFSNALDILVKLNDSTHAVQL-WDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
             +C P     +  +  LVK N    A+ L +D++ G   +  P    Y  ++  L  +  
Sbjct: 854  SSCKPNTITHNIIIANLVKSNSLDKALDLFYDLVSG---DFSPTPCTYGPLLDGLLKSGR 910

Query: 342  VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
            ++     F++MV +G  P++  YN++     K   V+   + F  M++   +P   +  +
Sbjct: 911  LEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGIRPDLKSYTS 970

Query: 402  AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461
             +  L +A   + A+  +  + + G+     + N ++ GL    R+ +     +EM +R 
Sbjct: 971  LVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRG 1030

Query: 462  I 462
            I
Sbjct: 1031 I 1031



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/275 (20%), Positives = 114/275 (41%), Gaps = 40/275 (14%)

Query: 114  YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            + +NL++D  GK+G+  +++                             Y++ + S    
Sbjct: 826  FTYNLLLDAHGKSGKINELFEL---------------------------YEQMICS---- 854

Query: 174  SMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAILLEGWEKEGN 232
                 + + +  N +++ + +  N   +AL+ F + V     P   ++  LL+G  K G 
Sbjct: 855  ---SCKPNTITHNIIIANLVKS-NSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGR 910

Query: 233  VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
            +EEA + F EMV+ +   P + + Y   +    +   V+ A +  + M  E   P LK +
Sbjct: 911  LEEAKELFEEMVD-YGCRPNNAI-YNILINGFGKTGDVNTACELFKRMVREGIRPDLKSY 968

Query: 293  SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
            ++ +  L +      A+  ++ +   G  L  + I YN +I  L  +  ++     +D+M
Sbjct: 969  TSLVGCLCEAGRVDDALHYFEKLKQTGLYL--DSIAYNLMIDGLGRSHRIEEALTLYDEM 1026

Query: 353  VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
               G  PD  TYN +   L     V +  K + E+
Sbjct: 1027 QSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEEL 1061



 Score = 40.0 bits (92), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 1/124 (0%)

Query: 101  FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCG 159
            F +    G  L   A+NLM+D LG++ R E+       M+  G+   L T+ S+  +   
Sbjct: 988  FEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGV 1047

Query: 160  AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
            AG  ++A   ++ +   G+E +V   N+L+       N  S    +   +     P+  +
Sbjct: 1048 AGMVEQAGKLYEELQFIGLEPNVFTYNALIRGYSMSGNSDSAYAVYKRMMVGGCSPNTGT 1107

Query: 220  FAIL 223
            FA L
Sbjct: 1108 FAQL 1111


>gi|224149779|ref|XP_002336862.1| predicted protein [Populus trichocarpa]
 gi|222837029|gb|EEE75408.1| predicted protein [Populus trichocarpa]
          Length = 370

 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 121/243 (49%), Gaps = 8/243 (3%)

Query: 101 FFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSY 157
           FF WA    G   SP A+N MVD  GK   F+  W+ + +MK   V +++ TF+ +   Y
Sbjct: 133 FFNWASYQDGFDKSPEAFNEMVDFAGKVRMFDLAWHVIDLMKARDVEITVETFSILMRRY 192

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG 217
             AG   EA+ +F+ M  +  + D +A + L+S +CR+  + S A EF + +K   +PD 
Sbjct: 193 VRAGLAAEAIHAFNRMEDYNCKPDKIAFSILISILCRKR-RASEAQEFFDSLKDKFEPDV 251

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
             +  L+ GW + GN+ EA + FGEM  +      +V  Y   + +L R  Q+  A    
Sbjct: 252 IVYTNLVRGWCRAGNISEAERVFGEM--KVAGIKPNVYTYSIVIDSLCRCGQITRAHDVF 309

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337
             M    C P    +++ + I VK   +   +Q+++ M  +G    P+ + YN +I   C
Sbjct: 310 AEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQVYNQMKRLGCE--PDTVTYNFLIETHC 367

Query: 338 NND 340
            ++
Sbjct: 368 KDE 370



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 82/187 (43%), Gaps = 6/187 (3%)

Query: 255 LAYETFLITL---IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           +  ETF I +   +R     EA+     M+  NC P    FS  + IL +   ++ A + 
Sbjct: 180 ITVETFSILMRRYVRAGLAAEAIHAFNRMEDYNCKPDKIAFSILISILCRKRRASEAQEF 239

Query: 312 WDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECL 371
           +D    +     P++I+Y  ++   C   ++    R F +M   G  P+  TY+++ + L
Sbjct: 240 FD---SLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFGEMKVAGIKPNVYTYSIVIDSL 296

Query: 372 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 431
            +  ++      F EM+    QP  +   + + + + A   E  ++++N +   G  P  
Sbjct: 297 CRCGQITRAHDVFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQVYNQMKRLGCEPDT 356

Query: 432 ASANELL 438
            + N L+
Sbjct: 357 VTYNFLI 363


>gi|357441365|ref|XP_003590960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480008|gb|AES61211.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 105/426 (24%), Positives = 180/426 (42%), Gaps = 54/426 (12%)

Query: 93  DSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM----KEDGVLSLP 148
           D  S  +D  R   RG       +N+++      GR +    A+RVM    K++   ++ 
Sbjct: 163 DHASKVLD--RMKKRGFEPDVVTYNILIGNFCGRGRLDL---ALRVMDQLLKDNCKPTVI 217

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+  + ++    G  DEA+   D M   G+  D    N +++ +C+ E    RA EFL+R
Sbjct: 218 TYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGMCK-EGMLDRAFEFLSR 276

Query: 209 VKKIVDPDG-DSFAILLEGWEKEGNVEEANKTFGEM-VERFEWNPEHVLAYETFLITLIR 266
           + K     G  ++ ILL     EG  E   K   +M V+  E NP   + Y T +  L R
Sbjct: 277 ISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNP---ITYSTLITALCR 333

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNL 326
             ++DEA   L+VMK +   P    +   +  L +      A++  D M+  G   +P++
Sbjct: 334 DGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVDLAIEFLDDMISGGH--LPDI 391

Query: 327 IMYNAVIGLLCNNDDVDNVFRFFD-----------------------------------Q 351
           + YN+++  LC N + D     F+                                   +
Sbjct: 392 LSYNSILASLCKNGNADEALNIFEKLGEVGCPPNAGSYNTLFGALWSSGDKIRALGMILE 451

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE-WQPTPLNCATAITMLLDAD 410
           M+ +G  PD +TYN +  CL ++  V +  +   +M ++E  QPT ++  T +  L    
Sbjct: 452 MLSNGIDPDEITYNSLISCLCRDGLVDQAIELLVDMFESEKCQPTVISYNTVLLGLCKVQ 511

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 470
               AIE+   ++  G LP E +   L+ G+   G   D    A  ++N    I E +  
Sbjct: 512 RIIDAIEVLAAMVNEGCLPNETTYTLLIQGIGFAGWRYDAMELANLLVNMDA-ISEDSFK 570

Query: 471 KLKKAF 476
           + +K F
Sbjct: 571 RFQKIF 576



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/310 (22%), Positives = 140/310 (45%), Gaps = 5/310 (1%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F    +  C + KYDE++     M   G + DV+    L+      + +  +A++ +  +
Sbjct: 80  FMKTLNRSCKSAKYDESLYFLQHMVNRGYKPDVILCTKLIKGFFNMK-KIEKAIQVMEIL 138

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
           +K   PD  ++  ++ G+ K   V+ A+K    M +R  + P+ V+ Y   +       +
Sbjct: 139 EKHGKPDVFAYNAVISGFCKADRVDHASKVLDRMKKR-GFEPD-VVTYNILIGNFCGRGR 196

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY 329
           +D AL+ +  +  +NC PT+  ++  ++  +       A++L D M+  G  L P+   Y
Sbjct: 197 LDLALRVMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRG--LRPDRYTY 254

Query: 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389
           N V+  +C    +D  F F  ++  +G      TYN++   L+   +    EK   +M+ 
Sbjct: 255 NVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLV 314

Query: 390 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 449
              +P P+  +T IT L    + + A  +   + E  + P   S + L+  L   G++  
Sbjct: 315 KGCEPNPITYSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVDL 374

Query: 450 VRRFAEEMLN 459
              F ++M++
Sbjct: 375 AIEFLDDMIS 384



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 79/346 (22%), Positives = 142/346 (41%), Gaps = 6/346 (1%)

Query: 128 RFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS 187
           + E+    + ++++ G   +  + ++   +C A + D A    D M   G E DVV  N 
Sbjct: 127 KIEKAIQVMEILEKHGKPDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNI 186

Query: 188 LLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
           L+   C +  +   AL  ++++ K    P   ++ IL+E    +G ++EA K   EM+ R
Sbjct: 187 LIGNFCGR-GRLDLALRVMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSR 245

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
               P+    Y   +  + +   +D A +FL  +    C   +  ++  L  L+      
Sbjct: 246 -GLRPDRY-TYNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWE 303

Query: 307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM 366
           +  +L   M+  G    PN I Y+ +I  LC +  +D        M      PD  +Y+ 
Sbjct: 304 YGEKLMSDMLVKGCE--PNPITYSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDP 361

Query: 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 426
           +   L +  +V    +F  +MI     P  L+  + +  L      + A+ I+  + E G
Sbjct: 362 LISALCREGKVDLAIEFLDDMISGGHLPDILSYNSILASLCKNGNADEALNIFEKLGEVG 421

Query: 427 ILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
             P   S N L   L + G          EML+  I   E+T + L
Sbjct: 422 CPPNAGSYNTLFGALWSSGDKIRALGMILEMLSNGIDPDEITYNSL 467



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 96/225 (42%), Gaps = 6/225 (2%)

Query: 260 FLITLIRG---KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
           F+ TL R     + DE+L FL+ M      P +   +  +     +     A+Q+ +I+ 
Sbjct: 80  FMKTLNRSCKSAKYDESLYFLQHMVNRGYKPDVILCTKLIKGFFNMKKIEKAIQVMEILE 139

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
             G    P++  YNAVI   C  D VD+  +  D+M   G  PD +TYN++        R
Sbjct: 140 KHG---KPDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGRGR 196

Query: 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 436
           +    +   +++K+  +PT +     I   +     + A+++ + +L  G+ P   + N 
Sbjct: 197 LDLALRVMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNV 256

Query: 437 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
           ++ G+   G L     F   +     +    T + L +   NE +
Sbjct: 257 VVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGK 301


>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 603

 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/364 (23%), Positives = 164/364 (45%), Gaps = 14/364 (3%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           A   ++    ++G+  +    + +++  G +  + T+  +   YC +G+ D+A+   + M
Sbjct: 144 ACTSLIRGFCRSGKTRKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALQVLERM 203

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGN 232
           S   V  DVV  N++L ++C    +   A+E L+R +++   PD  ++ IL+E    +  
Sbjct: 204 S---VAPDVVTYNTILRSLC-DSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCNDSG 259

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           V +A K   EM  R +     V+ Y   +  + +  ++DEA+KFL  M    C P +   
Sbjct: 260 VGQAMKLLDEM--RKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITH 317

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  L  +        A +L   M+  G +  P+++ +N +I  LC    +       ++M
Sbjct: 318 NIILRSMCSTGRWMDAERLLADMLRKGCS--PSVVTFNILINFLCRKRLLGRAIDVLEKM 375

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
             HG  P+SL+YN +     + K++    ++   M+     P  +   T +T L    + 
Sbjct: 376 PKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKA 435

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNRRILIYEVT 468
           + A+EI N +   G  P+  + N ++ GL  +G+        EEM    L   I+ Y   
Sbjct: 436 DAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTL 495

Query: 469 MHKL 472
           +  L
Sbjct: 496 LRGL 499



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 91/390 (23%), Positives = 176/390 (45%), Gaps = 15/390 (3%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N+++    K+G  ++   A++V++   V   + T+ +I  S C +GK  EA+   D  
Sbjct: 179 TYNVLIGGYCKSGEIDK---ALQVLERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQ 235

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGN 232
                  DV+    L+ A C  ++   +A++ L+ + KK   PD  ++ +L+ G  KEG 
Sbjct: 236 MQRECYPDVITYTILIEATC-NDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGR 294

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           ++EA K    M   +   P +V+ +   L ++    +  +A + L  M  + C P++  F
Sbjct: 295 LDEAIKFLNNM-PLYGCQP-NVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTF 352

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  ++ L +      A+ + + M   G   MPN + YN ++   C    +D    + + M
Sbjct: 353 NILINFLCRKRLLGRAIDVLEKMPKHG--CMPNSLSYNPLLHGFCQEKKMDRAIEYLEIM 410

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
           V  G +PD +TYN +   L K+ +     +  +++      P  +   T I  L    + 
Sbjct: 411 VSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKT 470

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVT 468
           E A E+   +   G+ P   + + LL GL   G++ +  +   +M    I    + Y   
Sbjct: 471 EYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAIKIFHDMEGLSIKPSAVTYNAI 530

Query: 469 MHKLKKAFYNESRSMRDIFDSLERRCKTSQ 498
           M  L KA    SR++  +   +E+ CK ++
Sbjct: 531 MLGLCKA-QQTSRAIDFLAYMVEKGCKPTK 559



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/333 (22%), Positives = 145/333 (43%), Gaps = 15/333 (4%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            + ++++    +    Q    +  M++ G    + T+  + +  C  G+ DEA+   + M
Sbjct: 246 TYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNM 305

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
            ++G + +V+  N +L ++C             + ++K   P   +F IL+       N 
Sbjct: 306 PLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILI-------NF 358

Query: 234 EEANKTFGEMVERFEWNPEH-----VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
               +  G  ++  E  P+H      L+Y   L    + K++D A+++L +M    C+P 
Sbjct: 359 LCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPD 418

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
           +  ++  L  L K   +  AV++ + +   G +  P LI YN VI  L      +     
Sbjct: 419 IVTYNTLLTALCKDGKADAAVEILNQLSSKGCS--PVLITYNTVIDGLTKVGKTEYAAEL 476

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
            ++M   G  PD +TY+ +   L    +V E  K FH+M     +P+ +     +  L  
Sbjct: 477 LEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCK 536

Query: 409 ADEPEIAIEIWNYILENGILPLEASANELLVGL 441
           A +   AI+   Y++E G  P +A+   L+ G+
Sbjct: 537 AQQTSRAIDFLAYMVEKGCKPTKATYTILIEGI 569



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 137/292 (46%), Gaps = 9/292 (3%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G +     +N++++ + K GR ++    +  M   G   ++ T   I  S C  G++ +
Sbjct: 273 KGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMD 332

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILL 224
           A      M   G    VV  N L++ +CR+     RA++ L ++ K    P+  S+  LL
Sbjct: 333 AERLLADMLRKGCSPSVVTFNILINFLCRKR-LLGRAIDVLEKMPKHGCMPNSLSYNPLL 391

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G+ +E  ++ A +    MV R  + P+ ++ Y T L  L +  + D A++ L  +  + 
Sbjct: 392 HGFCQEKKMDRAIEYLEIMVSRGCY-PD-IVTYNTLLTALCKDGKADAAVEILNQLSSKG 449

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI-GLLCNNDDVD 343
           C P L  ++  +D L K+  + +A +L + M   G  L P++I Y+ ++ GL C    VD
Sbjct: 450 CSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKG--LKPDIITYSTLLRGLGCEGK-VD 506

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 395
              + F  M      P ++TYN I   L K ++      F   M++   +PT
Sbjct: 507 EAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPT 558


>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
 gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 167/371 (45%), Gaps = 9/371 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG   +   +N ++  L K    ++    +  M ++GV+ +  T+ SI   YC +G+  E
Sbjct: 228 RGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKE 287

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A+     M   GVE DVV  NSL+  +C+    T     F +  K+ + P+  ++  LL+
Sbjct: 288 AIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQ 347

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+  +G + E +     MV R   +P H + +   +    +  +VD+A+     M+ +  
Sbjct: 348 GYATKGALVEMHGLLDLMV-RNGIHPNHYV-FSILICAYAKQGKVDQAMLVFSKMRQQGL 405

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P    +   + IL K      A++ ++ M  I   L P  I+YN++I  LC  D  D  
Sbjct: 406 NPDTVTYGTVIGILCKSGRVEDAMRYFEQM--IDERLSPGNIVYNSLIHSLCIFDKWDKA 463

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
                +M+  G   D++ +N I +   K  RV E EK F  M++   +P  +  +T I  
Sbjct: 464 KELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDG 523

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNRR 461
              A + + A ++   ++  G+ P   + N L+ G   + R+ D      EM    ++  
Sbjct: 524 YCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPD 583

Query: 462 ILIYEVTMHKL 472
           I+ Y + +  L
Sbjct: 584 IITYNIILQGL 594



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 88/391 (22%), Positives = 171/391 (43%), Gaps = 10/391 (2%)

Query: 56  ICEILAHASSDDIESALACTGIIPTPDLVHEVLQ--LSYDSPSSAVDFFR-WAGRGQRLS 112
           +C+  A   + ++ +++   G++P     + ++    S   P  A+ F +     G    
Sbjct: 244 LCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPD 303

Query: 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFD 171
              +N ++D L KNGR  +       M + G+   + T+ ++   Y   G   E     D
Sbjct: 304 VVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLD 363

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
           +M  +G+  +    + L+ A  +Q       L F    ++ ++PD  ++  ++    K G
Sbjct: 364 LMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSG 423

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF-LRVMKGENCFPTLK 290
            VE+A + F +M++    +P +++ Y + + +L    + D+A +  L ++    C  T+ 
Sbjct: 424 RVEDAMRYFEQMIDE-RLSPGNIV-YNSLIHSLCIFDKWDKAKELILEMLDRGICLDTI- 480

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
           FF++ +D   K      + +L+D+MV IG    PN+I Y+ +I   C    +D   +   
Sbjct: 481 FFNSIIDSHCKEGRVIESEKLFDLMVRIGVK--PNIITYSTLIDGYCLAGKMDEATKLLA 538

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
            MV  G  PD +TYN +     K  R+ +    F EM  +   P  +     +  L    
Sbjct: 539 SMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTR 598

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGL 441
               A E++  I E+G     ++ N +L GL
Sbjct: 599 RTAAAKELYVGITESGTQLELSTYNIILHGL 629



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/414 (19%), Positives = 165/414 (39%), Gaps = 55/414 (13%)

Query: 107 RGQRLSPYAWNLMVDVLGKNG------RFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGA 160
           RG+  S Y  N  +  + ++       R+ +M    R   ++   +L T+  +  S C A
Sbjct: 48  RGRGASIYGLNCALADVARHSPAAAVSRYNRM---ARAGADEVTPNLCTYGILIGSCCCA 104

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR-------------------------- 194
           G+ D    +   +   G   D +A   LL  +C                           
Sbjct: 105 GRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFS 164

Query: 195 ---------QENQTSRALEFLNRV---KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
                     EN++  ALE L  +        PD  S+  ++ G+ KEG++++A  T+ E
Sbjct: 165 YNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHE 224

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
           M++R      +V+ Y + +  L + + +D+A++ L  M      P  + +++ +      
Sbjct: 225 MLDRGIL--PNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSS 282

Query: 303 NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSL 362
                A+     M   G    P+++ YN+++  LC N       + FD M   G  P+  
Sbjct: 283 GQPKEAIGFLKKMHSDGVE--PDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEIT 340

Query: 363 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 422
           TY  + +       + E+      M++N   P     +  I       + + A+ +++ +
Sbjct: 341 TYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKM 400

Query: 423 LENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVTMHKL 472
            + G+ P   +   ++  L   GR+ D  R+ E+M++ R+    ++Y   +H L
Sbjct: 401 RQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSL 454



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 141/318 (44%), Gaps = 9/318 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSF 170
           +++N+++  L    R ++    +++M +DG    P   ++ ++ + +   G  D+A  ++
Sbjct: 163 FSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTY 222

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEK 229
             M   G+  +VV  NS+++A+C+ +    +A+E L   VK  V P+  ++  ++ G+  
Sbjct: 223 HEMLDRGILPNVVTYNSIIAALCKAQ-AMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCS 281

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
            G  +EA     +M    +     V+ Y + +  L +  +  EA K    M      P +
Sbjct: 282 SGQPKEAIGFLKKM--HSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEI 339

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
             +   L              L D+MV  G +  PN  +++ +I        VD     F
Sbjct: 340 TTYGTLLQGYATKGALVEMHGLLDLMVRNGIH--PNHYVFSILICAYAKQGKVDQAMLVF 397

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 409
            +M   G  PD++TY  +   L K+ RV +  ++F +MI     P  +   + I  L   
Sbjct: 398 SKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIF 457

Query: 410 DEPEIAIEIWNYILENGI 427
           D+ + A E+   +L+ GI
Sbjct: 458 DKWDKAKELILEMLDRGI 475



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 140/316 (44%), Gaps = 18/316 (5%)

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI----VDPDGDS 219
           ++A   FD +   G    +  +N  L+ + R     + A+   NR+ +     V P+  +
Sbjct: 36  EDARHVFDELLRRGRGASIYGLNCALADVARH--SPAAAVSRYNRMARAGADEVTPNLCT 93

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKF-L 277
           + IL+      G ++      G ++++ F  +    +A+   L  L   K+  +A+   L
Sbjct: 94  YGILIGSCCCAGRLDLGFAALGNVIKKGFRVD---AIAFTPLLKGLCADKRTSDAMDIVL 150

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337
           R M    C P +  ++  L  L   N S  A++L  +M   G +  P+++ Y  VI    
Sbjct: 151 RRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFF 210

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
              D+D  +  + +M+  G  P+ +TYN I   L K + + +  +    M+KN   P   
Sbjct: 211 KEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMP--- 267

Query: 398 NCATAITML---LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 454
           NC T  +++     + +P+ AI     +  +G+ P   + N L+  L   GR ++ R+  
Sbjct: 268 NCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMF 327

Query: 455 EEMLNRRILIYEVTMH 470
           + M  +R L  E+T +
Sbjct: 328 DSM-TKRGLKPEITTY 342



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 134/296 (45%), Gaps = 17/296 (5%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKE--DGVLSLP--TFASIFDSYCGA 160
           R Q L+P    +  ++ +L K+GR E   +A+R  ++  D  LS     + S+  S C  
Sbjct: 401 RQQGLNPDTVTYGTVIGILCKSGRVE---DAMRYFEQMIDERLSPGNIVYNSLIHSLCIF 457

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN--QTSRALEFLNRVKKIVDPDGD 218
            K+D+A      M   G+  D +  NS++ + C++    ++ +  + + R+   V P+  
Sbjct: 458 DKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIG--VKPNII 515

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           +++ L++G+   G ++EA K    MV      P+ V  Y T +    +  ++++AL   R
Sbjct: 516 TYSTLIDGYCLAGKMDEATKLLASMVS-VGMKPDCV-TYNTLINGYCKISRMEDALVLFR 573

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            M+     P +  ++  L  L +   +  A +L+  +   G  L   L  YN ++  LC 
Sbjct: 574 EMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQL--ELSTYNIILHGLCK 631

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
           N+  D   R F  +       ++ T+N++   L+K  R  E +  F  +  N   P
Sbjct: 632 NNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVP 687


>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
 gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
          Length = 831

 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/390 (22%), Positives = 172/390 (44%), Gaps = 8/390 (2%)

Query: 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSF 170
           L+  AW   +  L K+G+ EQ + A R M+E    S P +  +      +G+ D+A  + 
Sbjct: 303 LNNVAWTAFLSGLCKSGKIEQAFEACRTMQESLSSSQPVYDMLIRLLIESGRIDKAEEAC 362

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEK 229
             ++   ++      +S++  +C+   +   AL  L   +K+   PD  + ++L+    K
Sbjct: 363 LEIAGRNIQPSSGTCHSVIQELCKA-GRVDSALSLLETMIKRGYCPDMATHSMLINELCK 421

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF-PT 288
              ++EA +    M  +         +Y + L +L + K+V +A      M  E  F P 
Sbjct: 422 ADKIQEAQEFLQGMDRKISSRSSSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPD 481

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
           +  +S  +D   K+++   A +L+  M  I  N +PN+  YNA +  L     + +    
Sbjct: 482 VVSYSILIDGFCKIDELGRAEKLYKQM--IDLNCVPNVTTYNAFLNGLMRKGRIADAQGV 539

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
           +++MV  G  PD +TY+ +       ++  +  + F  MI    +P  +     +  L  
Sbjct: 540 YEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCK 599

Query: 409 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 468
             +P+ A E++  ++E G  P   +   LL G  N+G++       +EM+++      V 
Sbjct: 600 ESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVA 659

Query: 469 MHKLKKAFYNESR--SMRDIFDSL-ERRCK 495
            + L K F+   +    + +F  +  R+CK
Sbjct: 660 YNCLLKGFFRAGKPGEAKQLFQVMVSRQCK 689



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 121/272 (44%), Gaps = 5/272 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N  ++ L + GR          M   G    + T++++   +  A K+D+A   F+ M 
Sbjct: 520 YNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMI 579

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G   + V  N LL  +C++         F   V++  DPD  ++  LL G+   G +E
Sbjct: 580 SRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIE 639

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           +A + F EMV +   +P+ V+AY   L    R  +  EA +  +VM    C P     + 
Sbjct: 640 QAVEVFDEMVSK-GHDPD-VVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHNI 697

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
            +D L K      AV++++ M        P+L+ YN++I  LC    +    + F ++  
Sbjct: 698 MIDGLSKAKRLDDAVEVFERMEQ-DHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDR 756

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 386
               PD   +N++ E  IK   V++ E  F +
Sbjct: 757 LKLSPDPHAFNVLLE-AIKCGIVYQFEIRFKD 787



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/336 (21%), Positives = 136/336 (40%), Gaps = 46/336 (13%)

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
           EA+  F  +     + DV   N LL  + R  +       F   V + V P+G ++A+L+
Sbjct: 112 EALTFFRWLQARNFKHDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVLV 171

Query: 225 EGWEKEGNVEEANKTFGEMVER----------------------------FEWNPEHVLA 256
           +    E N +EA + FGEMV++                            F  + E  +A
Sbjct: 172 QSSCYERNSDEAVRFFGEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRVFGRDLEKRVA 231

Query: 257 YE-----TFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
            E       L+  +   +  EA K  R M    C P    +S  +    KL +   A +L
Sbjct: 232 VEMMLKKALLVNFVIQDKAIEASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFKL 291

Query: 312 WDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLT-----YNM 366
           + + + +      N + + A +  LC +  ++  F     M       +SL+     Y+M
Sbjct: 292 F-LEMAVESKAPLNNVAWTAFLSGLCKSGKIEQAFEACRTM------QESLSSSQPVYDM 344

Query: 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 426
           +   LI++ R+ + E+   E+     QP+   C + I  L  A   + A+ +   +++ G
Sbjct: 345 LIRLLIESGRIDKAEEACLEIAGRNIQPSSGTCHSVIQELCKAGRVDSALSLLETMIKRG 404

Query: 427 ILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
             P  A+ + L+  L    ++ + + F + M +R+I
Sbjct: 405 YCPDMATHSMLINELCKADKIQEAQEFLQGM-DRKI 439



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 79/173 (45%), Gaps = 2/173 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDE 165
           RG R +   +N ++  L K  + ++     R M E G      T+ ++   +C  GK ++
Sbjct: 581 RGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQ 640

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           AV  FD M   G + DVVA N LL    R          F   V +   PD  S  I+++
Sbjct: 641 AVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHNIMID 700

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           G  K   +++A + F  M +    +P+ ++ Y + +  L   +++ EA+K  +
Sbjct: 701 GLSKAKRLDDAVEVFERMEQDHGCSPD-LVTYNSLIFGLCGEQRLSEAMKVFK 752


>gi|9755668|emb|CAC01820.1| putative protein [Arabidopsis thaliana]
          Length = 532

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 109/450 (24%), Positives = 200/450 (44%), Gaps = 18/450 (4%)

Query: 49  ISSSARIICEILAHASSD--DIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAG 106
           +S     I +++    SD  ++ + L    + P+ +LV E+L    +   +A  FF WAG
Sbjct: 53  VSEDVGKISKLVKDCGSDRKELRNKLEECDVKPSNELVVEILSRVRNDWETAFTFFVWAG 112

Query: 107 RGQRL--SPYAWNLMVDVLGKNGRFEQMWNAVRVMKE--DGVLSLPTFASIFDSYCGAGK 162
           + Q    S   ++ M+ +LGK  +F+  W  +  M++    +++  T   +   YC    
Sbjct: 113 KQQGYVRSVREYHSMISILGKMRKFDTAWTLIDEMRKFSPSLVNSQTLLIMIRKYCAVHD 172

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRA-LEFLNRVKKIVDPDGDSFA 221
             +A+ +F       +E  +    SLLSA+CR +N +    L F N+ K   D    SF 
Sbjct: 173 VGKAINTFHAYKRFKLEMGIDDFQSLLSALCRYKNVSDAGHLIFCNKDKYPFD--AKSFN 230

Query: 222 ILLEGWEKE-GNVEEANKTFGEMVERFEWNPEH-VLAYETFLITLIRGKQVDEALKFLRV 279
           I+L GW    G+  EA + + EM        +H V++Y + +    +G  +++ LK    
Sbjct: 231 IVLNGWCNVIGSPREAERVWMEMGNV---GVKHDVVSYSSMISCYSKGGSLNKVLKLFDR 287

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
           MK E   P  K ++  +  L K +  + A  L   M      + PN++ YN++I  LC  
Sbjct: 288 MKKECIEPDRKVYNAVVHALAKASFVSEARNLMKTMEEEK-GIEPNVVTYNSLIKPLCKA 346

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
              +   + FD+M+  G FP   TY+     L   + V E+     +M K   +PT    
Sbjct: 347 RKTEEAKQVFDEMLEKGLFPTIRTYHAFMRILRTGEEVFEL---LAKMRKMGCEPTVETY 403

Query: 400 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
              I  L    + +  + +W+ + E  + P  +S   ++ GL   G++ +   + +EM +
Sbjct: 404 IMLIRKLCRWRDFDNVLLLWDEMKEKTVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMKD 463

Query: 460 RRILIYEVTMHKLKKAFYNESRSMRDIFDS 489
           + +   E     ++  F  +  + + I DS
Sbjct: 464 KGMRPNENVEDMIQSWFSGKQYAEQRITDS 493


>gi|255586501|ref|XP_002533891.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526155|gb|EEF28491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 701

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 166/365 (45%), Gaps = 10/365 (2%)

Query: 116 WNLMVDVLGKNGRFEQ---MWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           +N+M++ L K GRF++   +W   R+ K +    + T++S+    C AG  D AV  +  
Sbjct: 260 YNIMINGLCKCGRFDESLEIWE--RMTKNEREKDMFTYSSLIHGLCEAGNIDGAVRVYKE 317

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           +    +  D V  N++L+  CR   +   + E    + K       S+ IL++G  + G 
Sbjct: 318 IVESSLVVDAVTHNAMLNGFCRA-GKIKESFELWMVMGKENCQTVVSYNILIKGLFENGK 376

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           VEEA   + E++ +    PE    Y   +  L +  ++++ALK  +  +          +
Sbjct: 377 VEEAISIW-ELLCKKGCRPEST-TYGVLIHGLCKNGRLNKALKIFKEAEDGPGKLDAYAY 434

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           S+ +D L K      A+ + + M   G+ L P++   N +I        +++   FF +M
Sbjct: 435 SSMVDGLCKEGRMDEAISIVNQMDKRGYKLDPHVC--NPLINGFVRASKLEDAINFFREM 492

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
              G  P  ++YN + + L K +R  E   F  EM++ EW+P  + C+  +  L    + 
Sbjct: 493 ECKGCSPTIVSYNTLIKGLCKAERFSEAYSFVKEMLEKEWKPDMITCSLLMDGLCQEKKI 552

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
           E+A+ +W   L+ G  P     N L+ GL ++ +L D  +    M     +   VT + L
Sbjct: 553 EMALNLWQQALDKGFKPDITMYNILMHGLCSVCKLEDALQLYSHMKRSTCVPNLVTRNTL 612

Query: 473 KKAFY 477
            +  Y
Sbjct: 613 MEGLY 617



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/364 (21%), Positives = 169/364 (46%), Gaps = 8/364 (2%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176
           N M++   + G+ ++ +    VM ++   ++ ++  +       GK +EA+  ++++   
Sbjct: 331 NAMLNGFCRAGKIKESFELWMVMGKENCQTVVSYNILIKGLFENGKVEEAISIWELLCKK 390

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDP-DGDSFAILLEGWEKEGNVEE 235
           G   +      L+  +C+   + ++AL+     +      D  +++ +++G  KEG ++E
Sbjct: 391 GCRPESTTYGVLIHGLCKN-GRLNKALKIFKEAEDGPGKLDAYAYSSMVDGLCKEGRMDE 449

Query: 236 ANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           A     +M +R ++ +P HV      +   +R  ++++A+ F R M+ + C PT+  ++ 
Sbjct: 450 AISIVNQMDKRGYKLDP-HVC--NPLINGFVRASKLEDAINFFREMECKGCSPTIVSYNT 506

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
            +  L K    + A      M+   +   P++I  + ++  LC    ++     + Q + 
Sbjct: 507 LIKGLCKAERFSEAYSFVKEMLEKEWK--PDMITCSLLMDGLCQEKKIEMALNLWQQALD 564

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 414
            G  PD   YN++   L    ++ +  + +  M ++   P  +   T +  L    + E 
Sbjct: 565 KGFKPDITMYNILMHGLCSVCKLEDALQLYSHMKRSTCVPNLVTRNTLMEGLYKVRDYEK 624

Query: 415 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKK 474
           A EIW+ IL++G+ P   S N  + GL +  R+SD   F  + LNR IL   VT + L +
Sbjct: 625 ASEIWDCILKDGLHPDIISYNITIKGLCSCSRISDAIEFLNDALNRGILPTAVTWNILVR 684

Query: 475 AFYN 478
           A  N
Sbjct: 685 AAVN 688



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 54/258 (20%), Positives = 122/258 (47%), Gaps = 7/258 (2%)

Query: 195 QENQTSRALEFLNRVKKI--VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
           +   +++AL+    ++ I    P   S+  LL  +  E N  +  ++F    E  + +P 
Sbjct: 92  KNKMSNKALDTFQNMQDIFGCKPGVRSYNTLLNAF-VELNEWDRAESFSRYFESMDVSP- 149

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
           ++  Y   +    + +Q+++A+  L  M  +N  P +  +   ++ +VK+ D   A++++
Sbjct: 150 NLQTYNILIKISCKKQQIEKAISLLDWMWSQNLKPDVFSYGTLINGMVKVGDLLGALKVF 209

Query: 313 DIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH-GAFPDSLTYNMIFECL 371
           D M   G  ++ ++  YN +I     + D D     ++++V     +P+ +TYN++   L
Sbjct: 210 DEMSVRG--VVADVTCYNMLIDGFFKHGDYDKGKEIWERLVKDCSVYPNVVTYNIMINGL 267

Query: 372 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 431
            K  R  E  + +  M KNE +      ++ I  L +A   + A+ ++  I+E+ ++   
Sbjct: 268 CKCGRFDESLEIWERMTKNEREKDMFTYSSLIHGLCEAGNIDGAVRVYKEIVESSLVVDA 327

Query: 432 ASANELLVGLRNLGRLSD 449
            + N +L G    G++ +
Sbjct: 328 VTHNAMLNGFCRAGKIKE 345


>gi|356548144|ref|XP_003542463.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 756

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/349 (25%), Positives = 153/349 (43%), Gaps = 9/349 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N +V+ L + G  +Q    +  M E G  L + T+ S+    C  G+ DEAV     M
Sbjct: 304 TFNALVNGLCRTGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEILHHM 363

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV--KKIVDPDGDSFAILLEGWEKEG 231
                E + V  N+L+  +C+ EN    A E L RV   K V PD  +F  L++G     
Sbjct: 364 VSRDCEPNTVTYNTLIGTLCK-ENHVEAATE-LARVLTSKGVLPDVCTFNSLIQGLCLTS 421

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           N E A + F EM E+   +P+    Y   + +L   +++ EAL  L+ M+   C   +  
Sbjct: 422 NREIAMELFEEMKEK-GCDPDE-FTYSILIESLCSERRLKEALMLLKEMELSGCARNVVV 479

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           ++  +D L K N    A  ++D M  +G +   + + YN +I  LC +  V+   +  DQ
Sbjct: 480 YNTLIDGLCKNNRVGDAEDIFDQMEMLGVS--RSSVTYNTLINGLCKSKRVEEAAQLMDQ 537

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M+  G  PD  TY  + +   +   +         M  N  +P  +   T I  L  A  
Sbjct: 538 MIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAGR 597

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
            ++A ++   +   G++    + N ++  L    R  +  R   EM+ +
Sbjct: 598 VDVASKLLRSVQMKGMVLTPQAYNPVIQALCKRKRTKEAMRLFREMMEK 646



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 153/343 (44%), Gaps = 11/343 (3%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVR-VMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           G  L+  + N++V+ L K GR E+   A+R + +E+G      TF ++ +  C  G   +
Sbjct: 264 GCELTSVSVNVLVNGLCKEGRIEE---ALRFIYEEEGFCPDQVTFNALVNGLCRTGHIKQ 320

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILL 224
            +   D M   G E DV   NSL+S +C+   +   A+E L+  V +  +P+  ++  L+
Sbjct: 321 GLEMMDFMLEKGFELDVYTYNSLISGLCKL-GEIDEAVEILHHMVSRDCEPNTVTYNTLI 379

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
               KE +VE A +    ++      P+ V  + + +  L      + A++    MK + 
Sbjct: 380 GTLCKENHVEAATE-LARVLTSKGVLPD-VCTFNSLIQGLCLTSNREIAMELFEEMKEKG 437

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
           C P    +S  ++ L        A+ L   M   G     N+++YN +I  LC N+ V +
Sbjct: 438 CDPDEFTYSILIESLCSERRLKEALMLLKEMELSG--CARNVVVYNTLIDGLCKNNRVGD 495

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
               FDQM   G    S+TYN +   L K+KRV E  +   +MI    +P      T + 
Sbjct: 496 AEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTMLK 555

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
                 + + A +I   +  NG  P   +   L+ GL   GR+
Sbjct: 556 YFCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAGRV 598



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 82/367 (22%), Positives = 143/367 (38%), Gaps = 12/367 (3%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLS--PYAWNLMVDVLGKNGRFEQMWNAVR 137
           +P  + ++L+   DS SSA+  F+WA      S  P  ++ ++  L + G F+ M   +R
Sbjct: 58  SPSQLLDLLRRQPDS-SSALSLFQWASAQPNYSAHPSVFHELLRQLARAGSFDSMLTLLR 116

Query: 138 VMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH--GVEQDVVAVNSLLSAICR 194
            M    + +   TF    ++Y  +      +    ++      V+ D    N  LS + +
Sbjct: 117 QMHSSKIPVDESTFLIFLETYATSHHLHAEINPLFLLMERDFAVKPDTRFYNVALSLLVK 176

Query: 195 QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV 254
                         V   V PD  +F IL+    K   +  A     +M   +   P+  
Sbjct: 177 ANKLKLVETLHSKMVADAVPPDVSTFNILIRALCKAHQLRPAILMLEDM-PNYGLRPDEK 235

Query: 255 LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314
             + T +   I    V+ AL+   +M    C  T    +  ++ L K      A++   I
Sbjct: 236 -TFTTLMQGFIEEADVEGALRIKELMVESGCELTSVSVNVLVNGLCKEGRIEEALRF--I 292

Query: 315 MVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN 374
               GF   P+ + +NA++  LC    +       D M+  G   D  TYN +   L K 
Sbjct: 293 YEEEGF--CPDQVTFNALVNGLCRTGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKL 350

Query: 375 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 434
             + E  +  H M+  + +P  +   T I  L   +  E A E+   +   G+LP   + 
Sbjct: 351 GEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTF 410

Query: 435 NELLVGL 441
           N L+ GL
Sbjct: 411 NSLIQGL 417


>gi|356554658|ref|XP_003545661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 675

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 109/457 (23%), Positives = 184/457 (40%), Gaps = 79/457 (17%)

Query: 78  IPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQ---- 131
           +  P L+  VL      P+ A+ FFRWA R  G + S   + +++D+L +NG        
Sbjct: 44  VAEPQLLVRVLNTVRHRPAVALRFFRWAERQTGFKRSELTYAVILDILARNGLMRSAYCV 103

Query: 132 MWNAVRVMKEDGVLS----------------LPTFASIFDSYCGAG-------------- 161
           M   V V  E+GV+                 L     +F      G              
Sbjct: 104 MEKVVSVKMENGVVDVLILDLLLWIYAKKSMLEKCLLVFYKMVSKGMLPDLKNCNRVLRL 163

Query: 162 ------KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VD 214
                   D A   ++VM   G+   VV  N++L + C+Q  +   AL+ L +++K+   
Sbjct: 164 LRDRDSSIDVAREVYNVMVECGIRPTVVTYNTMLDSFCKQ-GKVQEALQLLLQMQKMGCL 222

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEM------VERFEWNP----------------- 251
           P+  ++ +L+ G    G +E+A +   EM      V  + ++P                 
Sbjct: 223 PNDVTYNVLVNGLSHSGELEQAKELIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRL 282

Query: 252 -EHVLA---------YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
            E +L+         Y T +  L +  +V +A K L VM  +N  P L  ++  +    +
Sbjct: 283 GEEMLSRGAVPTLVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTR 342

Query: 302 LNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS 361
           L +   A  L+  +   G  L+P+++ YN +I  LC   D+D   R  D+M+ HG  PD 
Sbjct: 343 LGNIGEAFLLFAELRFRG--LVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDV 400

Query: 362 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 421
            T+ ++     K   +   ++ F EM+    QP      T I   L   +P  A  +   
Sbjct: 401 FTFTILVRGFCKLGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEE 460

Query: 422 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
           +L  G  P   + N  + GL  LG L +     ++ML
Sbjct: 461 MLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKML 497



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 148/357 (41%), Gaps = 5/357 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG   +   +N ++  L K GR       + VM    ++  L ++ ++   Y   G   E
Sbjct: 289 RGAVPTLVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGE 348

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A + F  +   G+   VV  N+L+  +CR  +           +K   DPD  +F IL+ 
Sbjct: 349 AFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVR 408

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+ K GN+  A + F EM+ R    P+   AY T ++  ++     +A      M     
Sbjct: 409 GFCKLGNLPMAKELFDEMLNR-GLQPDR-FAYITRIVGELKLGDPSKAFGMQEEMLARGF 466

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P L  ++  +D L KL +   A +L   M+  G  L+P+ + Y ++I        +   
Sbjct: 467 PPDLITYNVFIDGLHKLGNLKEASELVKKMLYNG--LVPDHVTYTSIIHAHLMAGHLRKA 524

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
              F +M+  G FP  +TY ++        R+      F EM +    P  +     I  
Sbjct: 525 RAVFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALING 584

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
           L    + + A + +  +   GI P + +   L+    NLG   +  R  ++ML+R I
Sbjct: 585 LCKVRKMDQAYKFFTEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREI 641



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 120/289 (41%), Gaps = 45/289 (15%)

Query: 144 VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN-QTSRA 202
           V S+ T+ ++ D  C  G  D A+   D M  HG + DV     L+   C+  N   ++ 
Sbjct: 362 VPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRGFCKLGNLPMAKE 421

Query: 203 L--EFLNR---------VKKIVD-----------------------PDGDSFAILLEGWE 228
           L  E LNR         + +IV                        PD  ++ + ++G  
Sbjct: 422 LFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLH 481

Query: 229 KEGNVEEANKTFGEMVERFEWN---PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           K GN++EA+    E+V++  +N   P+HV  Y + +   +    + +A      M  +  
Sbjct: 482 KLGNLKEAS----ELVKKMLYNGLVPDHV-TYTSIIHAHLMAGHLRKARAVFLEMLSKGI 536

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
           FP++  ++  +           A+  +  M   G +  PN+I YNA+I  LC    +D  
Sbjct: 537 FPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVH--PNVITYNALINGLCKVRKMDQA 594

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
           ++FF +M   G  P+  TY ++           E  + + +M+  E QP
Sbjct: 595 YKFFTEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREIQP 643



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 6/172 (3%)

Query: 321 NLMPNLIMYNAVIGLLCNNDDVDNVFR-FFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
            ++P+L   N V+ LL + D   +V R  ++ MV  G  P  +TYN + +   K  +V E
Sbjct: 149 GMLPDLKNCNRVLRLLRDRDSSIDVAREVYNVMVECGIRPTVVTYNTMLDSFCKQGKVQE 208

Query: 380 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 439
             +   +M K    P  +     +  L  + E E A E+   +L  G+     + + L+ 
Sbjct: 209 ALQLLLQMQKMGCLPNDVTYNVLVNGLSHSGELEQAKELIQEMLRLGLEVSAYTYDPLIR 268

Query: 440 GLRNLGRLSDVRRFAEEMLNR----RILIYEVTMHKLKK-AFYNESRSMRDI 486
           G    G+L +  R  EEML+R     ++ Y   M+ L K    +++R + D+
Sbjct: 269 GYCEKGQLDEASRLGEEMLSRGAVPTLVTYNTIMYGLCKWGRVSDARKLLDV 320



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 82/229 (35%), Gaps = 37/229 (16%)

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN 325
           R   +D A +   VM      PT+  ++  LD   K      A+QL   M  +G   +PN
Sbjct: 167 RDSSIDVAREVYNVMVECGIRPTVVTYNTMLDSFCKQGKVQEALQLLLQMQKMG--CLPN 224

Query: 326 LIMYNAVIGLL-----------------------------------CNNDDVDNVFRFFD 350
            + YN ++  L                                   C    +D   R  +
Sbjct: 225 DVTYNVLVNGLSHSGELEQAKELIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGE 284

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
           +M+  GA P  +TYN I   L K  RV +  K    M+     P  ++  T I       
Sbjct: 285 EMLSRGAVPTLVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLG 344

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
               A  ++  +   G++P   + N L+ GL  +G L    R  +EM+ 
Sbjct: 345 NIGEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIK 393


>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Glycine max]
          Length = 1113

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 93/391 (23%), Positives = 177/391 (45%), Gaps = 41/391 (10%)

Query: 110 RLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           +L+P    +N+++  LGK G+  +  +    MKE G   +  TF ++ D  C     D A
Sbjct: 572 KLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESGCPPNTVTFNALLDCLCKNDAVDLA 631

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
           +  F  M++     DV+  N+++  + + E +   A  F +++KK + PD  +   LL G
Sbjct: 632 LKMFCRMTIMNCSPDVLTYNTIIYGLIK-EGRAGYAFWFYHQMKKFLSPDHVTLYTLLPG 690

Query: 227 WEKEGNVEEA----------------NKTFGEMVE--RFEWNPEHVLAY----------- 257
             K+G VE+A                N+ +GE++E    E   E  +++           
Sbjct: 691 VVKDGRVEDAIKIVMEFVHQSGLQTSNQVWGELMECILIEAEIEEAISFAEGLVCNSICQ 750

Query: 258 -ETFLITLIR-----GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
            +  ++ LIR      K +D    F +  K     PT + ++  +D L+  N +  A++L
Sbjct: 751 DDNLILPLIRVLCKQKKALDAKKLFDKFTKSLGTHPTPESYNCLMDGLLGCNITEAALKL 810

Query: 312 WDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECL 371
           +  M   G    PN+  YN ++     +  +D +F  +++M+  G  P+ +T+N+I   L
Sbjct: 811 FVEMKNAG--CCPNIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIISAL 868

Query: 372 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 431
           +K+  +++    ++E+I  ++ PTP      I  LL A   E A++I+  + +    P  
Sbjct: 869 VKSNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNC 928

Query: 432 ASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
           A  N L+ G    G ++      + M+   I
Sbjct: 929 AIYNILINGFGKAGNVNIACDLFKRMIKEGI 959



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 157/346 (45%), Gaps = 15/346 (4%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G R + Y + + + VLG+ GR +  +  ++ M+++G    + T+  + D+ C AGK D+A
Sbjct: 257 GLRPNIYTYTICIRVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKA 316

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD-----SFA 221
              +  M     + D+V   +L+S      +     LE + R    ++ DG      ++ 
Sbjct: 317 KELYTKMRASSHKPDLVTYITLMSKFGNYGD-----LETVKRFWSEMEADGYAPDVVTYT 371

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           IL+E   K G V++A      M  R      ++  Y T +  L+  +++DEAL+    M+
Sbjct: 372 ILVEALCKSGKVDQAFDMLDVM--RVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNME 429

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
                PT   +   +D   KL D   A+  ++ M   G  +MP++   NA +  L     
Sbjct: 430 SLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRG--IMPSIAACNASLYSLAEMGR 487

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
           +      F+ +   G  PDS+TYNM+ +C  K  ++ +  K   EM+    +P  +   +
Sbjct: 488 IREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNS 547

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
            I  L  A   + A +++  + +  + P   + N L+ GL   G+L
Sbjct: 548 LIDTLYKAGRVDEAWQMFGRLKDLKLAPTVVTYNILITGLGKEGKL 593



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 91/425 (21%), Positives = 171/425 (40%), Gaps = 44/425 (10%)

Query: 91  SYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP 148
           S   P+SA+ +F+   +   +  +P   N M++ L  +GR E M     +M++  +   P
Sbjct: 98  SISDPNSALSYFKMVSQLPNIVHTPETCNYMLEFLRVHGRVEDMAFVFDLMQKQVINRNP 157

Query: 149 -TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN 207
            T+ +IF +    G   +A  +   M   G   +  + N L+  +  Q      AL+   
Sbjct: 158 NTYLTIFKALSIKGGIRQAPFALGKMRQAGFVLNAYSYNGLIYFLL-QPGFCKEALKVYK 216

Query: 208 R-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
           R + + + P   +++ L+    +  +         EM E     P ++  Y   +  L R
Sbjct: 217 RMISEGLKPSMKTYSALMVALGRRRDTGTIMDLLEEM-ETLGLRP-NIYTYTICIRVLGR 274

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDIL-------------VKLNDSTHAVQL-- 311
             ++D+A   L+ M+ E C P +  ++  +D L              K+  S+H   L  
Sbjct: 275 AGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVT 334

Query: 312 --------------------WDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
                               W  M   G+   P+++ Y  ++  LC +  VD  F   D 
Sbjct: 335 YITLMSKFGNYGDLETVKRFWSEMEADGY--APDVVTYTILVEALCKSGKVDQAFDMLDV 392

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M   G  P+  TYN +   L+  +R+ E  + F+ M      PT  +    I       +
Sbjct: 393 MRVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGD 452

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK 471
           PE A++ +  + + GI+P  A+ N  L  L  +GR+ + +    ++ N  +    VT + 
Sbjct: 453 PEKALDTFEKMKKRGIMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNM 512

Query: 472 LKKAF 476
           + K +
Sbjct: 513 MMKCY 517



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 94/422 (22%), Positives = 171/422 (40%), Gaps = 48/422 (11%)

Query: 81  PDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLM--VDVLGKNGRFEQMWNAVRV 138
           PD+V   + +     +  +D  +      R S +  +L+  + ++ K G +  +    R 
Sbjct: 295 PDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVTYITLMSKFGNYGDLETVKRF 354

Query: 139 ---MKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194
              M+ DG    + T+  + ++ C +GK D+A    DVM + G+  ++   N+L+S +  
Sbjct: 355 WSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLN 414

Query: 195 QENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER------- 246
              +   ALE  N ++ + V P   S+ + ++ + K G+ E+A  TF +M +R       
Sbjct: 415 LR-RLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIA 473

Query: 247 ---------------------------FEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
                                         +P+ V  Y   +    +  Q+D+A K L  
Sbjct: 474 ACNASLYSLAEMGRIREAKDIFNDIHNCGLSPDSV-TYNMMMKCYSKAGQIDKATKLLTE 532

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
           M  E C P +   ++ +D L K      A Q++  +  +   L P ++ YN +I  L   
Sbjct: 533 MLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDL--KLAPTVVTYNILITGLGKE 590

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
             +      F  M   G  P+++T+N + +CL KN  V    K F  M      P  L  
Sbjct: 591 GKLLKALDLFGSMKESGCPPNTVTFNALLDCLCKNDAVDLALKMFCRMTIMNCSPDVLTY 650

Query: 400 ATAITMLLDADEPEIAIEIWNY-ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
            T I  L+   E       W Y  ++  + P   +   LL G+   GR+ D  +   E +
Sbjct: 651 NTIIYGLI--KEGRAGYAFWFYHQMKKFLSPDHVTLYTLLPGVVKDGRVEDAIKIVMEFV 708

Query: 459 NR 460
           ++
Sbjct: 709 HQ 710



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 56/262 (21%), Positives = 115/262 (43%), Gaps = 5/262 (1%)

Query: 197  NQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
            N T  AL+    +K     P+  ++ +LL+   K   ++E  + + EM+ R      +++
Sbjct: 802  NITEAALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNEMLCR--GCKPNII 859

Query: 256  AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
             +   +  L++   +++AL     +   +  PT   +   +  L+K   S  A+++++ M
Sbjct: 860  THNIIISALVKSNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEM 919

Query: 316  VGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 375
                +   PN  +YN +I       +V+     F +M+  G  PD  +Y ++ ECL    
Sbjct: 920  PD--YQCKPNCAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTG 977

Query: 376  RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 435
            RV +   +F E+      P  ++    I  L  +   E A+ +++ +   GI P   + N
Sbjct: 978  RVDDAVHYFEELKLTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYN 1037

Query: 436  ELLVGLRNLGRLSDVRRFAEEM 457
             L++   N G +    +  EE+
Sbjct: 1038 ALILHFGNAGMVDQAGKMFEEL 1059



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 66/300 (22%), Positives = 118/300 (39%), Gaps = 5/300 (1%)

Query: 164  DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAI 222
            +EA+   + +  + + QD   +  L+  +C+Q+        F    K +   P  +S+  
Sbjct: 734  EEAISFAEGLVCNSICQDDNLILPLIRVLCKQKKALDAKKLFDKFTKSLGTHPTPESYNC 793

Query: 223  LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
            L++G       E A K F EM  +      ++  Y   L    + K++DE  +    M  
Sbjct: 794  LMDGLLGCNITEAALKLFVEM--KNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNEMLC 851

Query: 283  ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
              C P +   +  +  LVK N    A+ L+  ++   F+  P    Y  +IG L      
Sbjct: 852  RGCKPNIITHNIIISALVKSNSINKALDLYYEIISGDFS--PTPCTYGPLIGGLLKAGRS 909

Query: 343  DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
            +   + F++M  +   P+   YN++     K   V+     F  MIK   +P   +    
Sbjct: 910  EEAMKIFEEMPDYQCKPNCAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTIL 969

Query: 403  ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
            +  L      + A+  +  +   G+ P   S N ++ GL    RL +      EM NR I
Sbjct: 970  VECLFMTGRVDDAVHYFEELKLTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGI 1029



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 99/217 (45%), Gaps = 6/217 (2%)

Query: 149  TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
            T+  +      AG+ +EA+  F+ M  +  + +    N L++   +  N       F   
Sbjct: 895  TYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILINGFGKAGNVNIACDLFKRM 954

Query: 209  VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
            +K+ + PD  S+ IL+E     G V++A   F E+ +    +P+ V +Y   +  L + +
Sbjct: 955  IKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEEL-KLTGLDPDTV-SYNLMINGLGKSR 1012

Query: 269  QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF-NLMPNLI 327
            +++EAL     MK     P L +  NAL  ++   ++    Q   +   + F  L PN+ 
Sbjct: 1013 RLEEALSLFSEMKNRGISPEL-YTYNAL--ILHFGNAGMVDQAGKMFEELQFMGLEPNVF 1069

Query: 328  MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTY 364
             YNA+I     + + D  F  F +M+  G  P++ T+
Sbjct: 1070 TYNALIRGHSKSGNKDRAFSVFKKMMIVGCSPNAGTF 1106



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 70/322 (21%), Positives = 134/322 (41%), Gaps = 38/322 (11%)

Query: 108  GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
            G   +P ++N ++D L      E        MK  G   ++ T+  + D++  + + DE 
Sbjct: 783  GTHPTPESYNCLMDGLLGCNITEAALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRIDEL 842

Query: 167  VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAILLE 225
               ++ M   G + +++  N ++SA+ +  N  ++AL+ +   +     P   ++  L+ 
Sbjct: 843  FELYNEMLCRGCKPNIITHNIIISALVKS-NSINKALDLYYEIISGDFSPTPCTYGPLIG 901

Query: 226  GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
            G  K G  EEA K F EM + ++  P   + Y   +    +   V+ A    + M  E  
Sbjct: 902  GLLKAGRSEEAMKIFEEMPD-YQCKPNCAI-YNILINGFGKAGNVNIACDLFKRMIKEGI 959

Query: 286  FPTLKFFSNALDILV---KLNDSTHAVQ------------LWDIMV-GIG---------- 319
             P LK ++  ++ L    +++D+ H  +             +++M+ G+G          
Sbjct: 960  RPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDPDTVSYNLMINGLGKSRRLEEALS 1019

Query: 320  -FNLM------PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 372
             F+ M      P L  YNA+I    N   VD   + F+++ F G  P+  TYN +     
Sbjct: 1020 LFSEMKNRGISPELYTYNALILHFGNAGMVDQAGKMFEELQFMGLEPNVFTYNALIRGHS 1079

Query: 373  KNKRVHEVEKFFHEMIKNEWQP 394
            K+         F +M+     P
Sbjct: 1080 KSGNKDRAFSVFKKMMIVGCSP 1101



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 36/180 (20%), Positives = 82/180 (45%), Gaps = 5/180 (2%)

Query: 116  WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
            +N++++  GK G      +  + M ++G+   L ++  + +     G+ D+AV  F+ + 
Sbjct: 931  YNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELK 990

Query: 175  MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNV 233
            + G++ D V+ N +++ + +   +   AL   + +K + + P+  ++  L+  +   G V
Sbjct: 991  LTGLDPDTVSYNLMINGLGKSR-RLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMV 1049

Query: 234  EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            ++A K F E+  +F     +V  Y   +    +    D A    + M    C P    F+
Sbjct: 1050 DQAGKMFEEL--QFMGLEPNVFTYNALIRGHSKSGNKDRAFSVFKKMMIVGCSPNAGTFA 1107



 Score = 44.7 bits (104), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 3/111 (2%)

Query: 115  AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            ++NLM++ LGK+ R E+  +    MK  G+   L T+ ++   +  AG  D+A   F+ +
Sbjct: 1000 SYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGKMFEEL 1059

Query: 174  SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAIL 223
               G+E +V   N+L+    +  N+  RA     ++  +   P+  +FA L
Sbjct: 1060 QFMGLEPNVFTYNALIRGHSKSGNK-DRAFSVFKKMMIVGCSPNAGTFAQL 1109


>gi|302775252|ref|XP_002971043.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
 gi|300161025|gb|EFJ27641.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
          Length = 457

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/357 (23%), Positives = 154/357 (43%), Gaps = 8/357 (2%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAG 161
           A RG + +  ++N +++ L K  R+ +    VR M   G  S P   T++++   YC AG
Sbjct: 37  AARGIQPNVVSYNGLLEGLCKLERWHEAEELVRDMISRGGRSTPDLVTYSTLLSGYCKAG 96

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221
           K +E+      +   G+  D +    +++++C+              ++    P   +F 
Sbjct: 97  KVEESRELLKEVISRGLRPDALMYTKVMASLCKSARLGEALELLEEMIRAGCCPTLITFN 156

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L+ G  +E N+E A+     M          V+ Y T +  L +  ++ EA + L  MK
Sbjct: 157 TLISGCCREKNLEMADSLLQTMAA--SGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMK 214

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
              C P +  +S+ +  L K     +A Q+ + M     +  PN++ YN ++  LC +  
Sbjct: 215 ASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDHD--PNVVTYNTILDGLCKSGK 272

Query: 342 VDNVFRFFDQMVFH-GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
           +D      +QM    G   + + Y+ + + L K  R  E       M +   +P  +  +
Sbjct: 273 IDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYS 332

Query: 401 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           + +  L  A + E A+E    +   G  P   +   L+ GL + GRL++  R  EEM
Sbjct: 333 SLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEM 389



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 131/282 (46%), Gaps = 15/282 (5%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           A  G +     +N ++D L K GR ++    +  MK  G    +  ++S     C +GK 
Sbjct: 179 AASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKV 238

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS---- 219
             A    + M     + +VV  N++L  +C+   +   ALE +   +++   DG      
Sbjct: 239 LNAHQVLEQMRDSDHDPNVVTYNTILDGLCKS-GKIDTALEMM---EQMASSDGCGLNVV 294

Query: 220 -FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
            ++ +++G  K G  +EA     E + R    P+ V+ Y + +  L +  +++EA++ +R
Sbjct: 295 GYSTVVDGLCKLGRTQEARSVM-EAMARAGCRPD-VVTYSSLVNGLCKAGKIEEAVEAVR 352

Query: 279 VMKGENCFPTLKFFSNALDILV---KLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGL 335
            M  E C P    + + +  L    +L ++   V+      G G +  P++  YNA+IG 
Sbjct: 353 EMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGG 412

Query: 336 LCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
           LC    +D+  +FF +M   G  PD ++Y+ I E L ++ R 
Sbjct: 413 LCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRA 454



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/313 (22%), Positives = 136/313 (43%), Gaps = 9/313 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN---QTSRALEF 205
           TF ++ + +   G+  +     + M+  G++ +VV+ N LL  +C+ E          + 
Sbjct: 12  TFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLERWHEAEELVRDM 71

Query: 206 LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
           ++R  +   PD  +++ LL G+ K G VEE+ +   E++ R    P+  L Y   + +L 
Sbjct: 72  ISRGGRST-PDLVTYSTLLSGYCKAGKVEESRELLKEVISRG-LRPD-ALMYTKVMASLC 128

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN 325
           +  ++ EAL+ L  M    C PTL  F+  +    +  +   A  L   M   G     +
Sbjct: 129 KSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVK--AD 186

Query: 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 385
           ++ YN ++  LC    +    +  ++M   G  PD + Y+     L K+ +V    +   
Sbjct: 187 VVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLE 246

Query: 386 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV-GLRNL 444
           +M  ++  P  +   T +  L  + + + A+E+   +  +    L       +V GL  L
Sbjct: 247 QMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKL 306

Query: 445 GRLSDVRRFAEEM 457
           GR  + R   E M
Sbjct: 307 GRTQEARSVMEAM 319



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 82/375 (21%), Positives = 145/375 (38%), Gaps = 53/375 (14%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFR-----WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWN 134
           TPDLV     LS    +  V+  R        RG R     +  ++  L K+ R  +   
Sbjct: 79  TPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVMASLCKSARLGEALE 138

Query: 135 AVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC 193
            +  M   G   +L TF ++    C     + A      M+  GV+ DVV  N+L+  +C
Sbjct: 139 LLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVKADVVTYNTLMDGLC 198

Query: 194 RQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
           +   +   A + L R+K     PD  +++  + G  K G V  A++   +M  R   +  
Sbjct: 199 KA-GRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQM--RDSDHDP 255

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVM-KGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           +V+ Y T L  L +  ++D AL+ +  M   + C   +  +S  +D L KL  +  A  +
Sbjct: 256 NVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSV 315

Query: 312 WDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTY------- 364
            + M   G    P+++ Y++++  LC    ++       +M   G  P+++TY       
Sbjct: 316 MEAMARAGCR--PDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGL 373

Query: 365 ---------------------------------NMIFECLIKNKRVHEVEKFFHEMIKNE 391
                                            N +   L K  R+ +  KFF  M    
Sbjct: 374 CSCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQG 433

Query: 392 WQPTPLNCATAITML 406
             P  ++ +T +  L
Sbjct: 434 CDPDGVSYSTIVEGL 448



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/245 (20%), Positives = 102/245 (41%), Gaps = 6/245 (2%)

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           P+  +F  L+ G+ K+G   +  +    M  R    P +V++Y   L  L + ++  EA 
Sbjct: 8   PNSVTFNALVNGFSKQGRPGDCERLLETMAARG-IQP-NVVSYNGLLEGLCKLERWHEAE 65

Query: 275 KFLRVM--KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAV 332
           + +R M  +G    P L  +S  L    K      + +L   ++  G  L P+ +MY  V
Sbjct: 66  ELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRG--LRPDALMYTKV 123

Query: 333 IGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 392
           +  LC +  +       ++M+  G  P  +T+N +     + K +   +     M  +  
Sbjct: 124 MASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGV 183

Query: 393 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 452
           +   +   T +  L  A   + A ++   +  +G  P   + +  + GL   G++ +  +
Sbjct: 184 KADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQ 243

Query: 453 FAEEM 457
             E+M
Sbjct: 244 VLEQM 248



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 8/136 (5%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G R     ++ +V+ L K G+ E+   AVR M  +G   +  T+ S+    C  G+  EA
Sbjct: 323 GCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEA 382

Query: 167 VMSFDVMSMHGVEQD-----VVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSF 220
               + MS  G   D     V   N+L+  +C+   +   AL+F  R++ +  DPDG S+
Sbjct: 383 ERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKA-GRIDDALKFFQRMRSQGCDPDGVSY 441

Query: 221 AILLEGWEKEGNVEEA 236
           + ++EG  + G   +A
Sbjct: 442 STIVEGLARSGRALQA 457


>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
 gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
          Length = 443

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 92/386 (23%), Positives = 169/386 (43%), Gaps = 19/386 (4%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           ++++++ L K G   Q  +  +    +G  + + T+ +I D      K  EAV   + ++
Sbjct: 2   FSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKIT 61

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD----PDGDSFAILLEGWEKE 230
            +G    +   N+LL+ +C+      R  E ++ ++KIVD    PD  ++  L++G  K+
Sbjct: 62  ANGCTPTIATYNALLNGLCKM----GRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKK 117

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
               EA K F EM  R        + Y   +  L++  ++ +A    + M  + C P + 
Sbjct: 118 KRSFEAYKLFKEMASR--GLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVV 175

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
             S  +D L K      AV+++  M   G  L PN ++Y+A+I  LC    +D       
Sbjct: 176 TLSTMIDGLCKAGRIGAAVRIFKSMEARG--LAPNEVVYSALIHGLCKARKMDCALEMLA 233

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
           QM      PD++TYN++ + L K+  V     FF EM++   +P        I+    A 
Sbjct: 234 QMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAG 293

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI----LIYE 466
             + A  +++ +  +   P   +   L+ GL    +L+    + + M  R       +Y 
Sbjct: 294 NTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYS 353

Query: 467 VTMHKLKKAFYNESRSMRDIFDSLER 492
             +  L K+   E   M  +FD +ER
Sbjct: 354 SLVDGLCKSGKLEGGCM--LFDEMER 377



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 133/322 (41%), Gaps = 40/322 (12%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F   A RG  L    +  ++  L + G+  Q  +  + M   G +  + T +++ D  C 
Sbjct: 127 FKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCK 186

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGD 218
           AG+   AV  F  M   G+  + V  ++L+  +C+       ALE L ++KK    PD  
Sbjct: 187 AGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDC-ALEMLAQMKKAFCTPDTI 245

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVER------FEWN---------------------- 250
           ++ IL++G  K G+V  A   F EM+E       + +N                      
Sbjct: 246 TYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDM 305

Query: 251 -----PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS 305
                  +V+ Y T +  L + +Q+ +A  + + MK   C P    +S+ +D L K    
Sbjct: 306 SSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGLCKSGKL 365

Query: 306 THAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYN 365
                L+D M   G   + N      +I  LC  + VD     F+ +   G  P    YN
Sbjct: 366 EGGCMLFDEMERSG---VANSQTRTRLIFHLCKANRVDEAVSLFNAIRKEG-MPHPYAYN 421

Query: 366 MIFECLIKNKRVHEVEKFFHEM 387
            I   LIK+ +V+E +  + EM
Sbjct: 422 SIISALIKSGKVNEGQAVYQEM 443



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/313 (21%), Positives = 134/313 (42%), Gaps = 5/313 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N +++ L K GR E+  + +R + ++G    + T+ S+ D      +  EA   F  M+
Sbjct: 72  YNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMA 131

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G+  D V   +L+  + +       +  +     +   PD  + + +++G  K G + 
Sbjct: 132 SRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIG 191

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
            A + F  M  R    P  V+ Y   +  L + +++D AL+ L  MK   C P    ++ 
Sbjct: 192 AAVRIFKSMEAR-GLAPNEVV-YSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNI 249

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
            +D L K  D   A   +D M+  G    P++  YN +I   C   + D     FD M  
Sbjct: 250 LIDGLCKSGDVAAARAFFDEMLEAGCK--PDVYTYNILISGFCKAGNTDAACGVFDDMSS 307

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 414
               P+ +TY  +   L K +++ +   ++  M +    P     ++ +  L  + + E 
Sbjct: 308 SRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGLCKSGKLEG 367

Query: 415 AIEIWNYILENGI 427
              +++ +  +G+
Sbjct: 368 GCMLFDEMERSGV 380


>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
           [Arabidopsis thaliana]
          Length = 602

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/356 (23%), Positives = 167/356 (46%), Gaps = 5/356 (1%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAG 161
           R    G +     +N +V+ + ++G     ++ +R M+E  V + + T+++I DS C  G
Sbjct: 183 RMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDG 242

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221
             D A+  F  M   G++  VV  NSL+  +C+       AL   + V + + P+  +F 
Sbjct: 243 CIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFN 302

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           +LL+ + KEG ++EAN+ + EM+ R   +P +++ Y T +       ++ EA   L +M 
Sbjct: 303 VLLDVFVKEGKLQEANELYKEMITR-GISP-NIITYNTLMDGYCMQNRLSEANNMLDLMV 360

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
              C P +  F++ +     +      ++++  +   G  L+ N + Y+ ++   C +  
Sbjct: 361 RNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRG--LVANAVTYSILVQGFCQSGK 418

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
           +      F +MV HG  PD +TY ++ + L  N ++ +  + F ++ K++     +   T
Sbjct: 419 IKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTT 478

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
            I  +    + E A  ++  +   G+ P   +   ++ GL   G LS+      +M
Sbjct: 479 IIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKM 534



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 82/368 (22%), Positives = 169/368 (45%), Gaps = 11/368 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y  N+M++   +  +    ++ + +VMK        TF ++ +  C  GK  +AV+  D 
Sbjct: 124 YTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKAVVLVDR 183

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEG 231
           M  +G + D+V  NS+++ ICR    TS A + L ++ ++ V  D  +++ +++   ++G
Sbjct: 184 MVENGCQPDMVTYNSIVNGICRS-GDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDG 242

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            ++ A   F EM    +     V+ Y + +  L +  + ++    L+ M      P +  
Sbjct: 243 CIDAAISLFKEM--ETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVIT 300

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           F+  LD+ VK      A +L+  M+  G +  PN+I YN ++   C  + +       D 
Sbjct: 301 FNVLLDVFVKEGKLQEANELYKEMITRGIS--PNIITYNTLMDGYCMQNRLSEANNMLDL 358

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           MV +   PD +T+  + +     KRV +  K F  + K       +  +  +     + +
Sbjct: 359 MVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGK 418

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNRRILIYEV 467
            ++A E++  ++ +G+LP   +   LL GL + G+L       E++    ++  I++Y  
Sbjct: 419 IKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTT 478

Query: 468 TMHKLKKA 475
            +  + K 
Sbjct: 479 IIEGMCKG 486



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 61/298 (20%), Positives = 127/298 (42%), Gaps = 7/298 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N+++DV  K G+ ++     + M   G+  ++ T+ ++ D YC   +  EA    D+M
Sbjct: 300 TFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLM 359

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
             +    D+V   SL+   C  +        F N  K+ +  +  +++IL++G+ + G +
Sbjct: 360 VRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKI 419

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           + A + F EMV      P+ V+ Y   L  L    ++++AL+    ++       +  ++
Sbjct: 420 KLAEELFQEMVSHGVL-PD-VMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYT 477

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGF-NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
             ++ + K      A   W++   +    + PN++ Y  +I  LC    +        +M
Sbjct: 478 TIIEGMCKGGKVEDA---WNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKM 534

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
              G  P+  TYN +    +++  +    K   EM    +     +    I MLL  +
Sbjct: 535 EEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLLSGE 592



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/305 (20%), Positives = 116/305 (38%), Gaps = 41/305 (13%)

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEG 231
           + ++G+  ++  +N +++  CR   +T  A   L +V K+  +PD  +F  L+ G   EG
Sbjct: 114 LELNGIAHNIYTLNIMINCFCRC-CKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEG 172

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            V +A      MVE     P+ V  Y + +  + R      A   LR M+  N       
Sbjct: 173 KVSKAVVLVDRMVEN-GCQPDMV-TYNSIVNGICRSGDTSLAFDMLRKMEERN------- 223

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
                                         +  ++  Y+ +I  LC +  +D     F +
Sbjct: 224 ------------------------------VKADVFTYSTIIDSLCRDGCIDAAISLFKE 253

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M   G     +TYN +   L K  + ++      +M+  E  P  +     + + +   +
Sbjct: 254 METKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGK 313

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK 471
            + A E++  ++  GI P   + N L+ G     RLS+     + M+  +     VT   
Sbjct: 314 LQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTS 373

Query: 472 LKKAF 476
           L K +
Sbjct: 374 LIKGY 378


>gi|359488007|ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Vitis vinifera]
          Length = 539

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 145/295 (49%), Gaps = 5/295 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           + N++VD L K G+  +  + V +M + GV   + T+A++ D +C   + DEAV  FD+M
Sbjct: 233 SLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMM 292

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
             +G   +VV+ N+L++  C+ +        F    ++ + P+  +++ L+ G    G +
Sbjct: 293 VRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGLCHVGRL 352

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           ++A   F EMV   +    +++ Y   L  L +  ++ EA+  L+ ++G N  P ++ ++
Sbjct: 353 QDAIALFNEMVACGQI--PNLVTYSILLDYLCKNHRLAEAMALLKAIEGSNLDPDVQVYN 410

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
            A+D + +  D   A  L+  +   G  L P++  +N +I  LC    +D   + F +M 
Sbjct: 411 IAIDGMCRAGDLEAARDLFSNLAPRG--LQPDVWTHNIMIRGLCKRGLLDEASKLFREMD 468

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
            +G   +  TYN I + L++N +     +   EM+   +       A  + ML D
Sbjct: 469 ENGCLRNGCTYNTITQGLLQNNKTSRAIQLLEEMLARGFSADVSTTALLVKMLSD 523



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 88/385 (22%), Positives = 157/385 (40%), Gaps = 49/385 (12%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           FA +  S      Y   +     M   G+  DV  +  ++++ C   N+   AL  L ++
Sbjct: 59  FAKLLTSIAKMKHYSTVLSLSKKMDSFGIPPDVYTLTIVINSFCHL-NRVDFALSVLAKI 117

Query: 210 KKIV-DPDGDSFAILLEGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLITLIRG 267
            K+   PD  +F  L+ G    G + EA   F +MV E F+ N   V+ Y T +  L + 
Sbjct: 118 LKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGEGFQPN---VVTYGTLMNGLCKD 174

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
           +Q+ EAL     M  +   P +  +++ +  L  L +  H   L + MV     +MPN++
Sbjct: 175 RQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVK--SKIMPNVV 232

Query: 328 MYNAVIGLLCNNDDV-----------------------------------DNVFRFFDQM 352
             N V+  LC    V                                   D   + FD M
Sbjct: 233 SLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMM 292

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
           V +G   + ++YN +     K +R+ +    F EM + E  P  +  +T I  L      
Sbjct: 293 VRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGLCHVGRL 352

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNRRILIYEVT 468
           + AI ++N ++  G +P   + + LL  L    RL++     + +    L+  + +Y + 
Sbjct: 353 QDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGSNLDPDVQVYNIA 412

Query: 469 MHKLKKAFYNESRSMRDIFDSLERR 493
           +  + +A   +  + RD+F +L  R
Sbjct: 413 IDGMCRA--GDLEAARDLFSNLAPR 435



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 77/366 (21%), Positives = 157/366 (42%), Gaps = 8/366 (2%)

Query: 98  AVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFD 155
           A+D F +  G G + +   +  +++ L K+ +  +  N    M   G+   + T+ S+  
Sbjct: 145 ALDVFDKMVGEGFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIH 204

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVD 214
           + C   ++       + M    +  +VV++N ++ A+C+ E + + A + ++  ++  V+
Sbjct: 205 ALCNLCEWKHVTTLLNEMVKSKIMPNVVSLNIVVDALCK-EGKVTEAHDVVDMMIQGGVE 263

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           PD  ++A L++G      ++EA K F  MV        +V++Y T +    + +++D+A+
Sbjct: 264 PDVVTYAALMDGHCLRSEMDEAVKVFDMMVR--NGCVCNVVSYNTLINGYCKIQRIDKAM 321

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
                M  +   P    +S  +  L  +     A+ L++ MV  G   +PNL+ Y+ ++ 
Sbjct: 322 YLFEEMCRQELIPNTMTYSTLIHGLCHVGRLQDAIALFNEMVACG--QIPNLVTYSILLD 379

Query: 335 LLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
            LC N  +         +      PD   YN+  + + +   +      F  +     QP
Sbjct: 380 YLCKNHRLAEAMALLKAIEGSNLDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPRGLQP 439

Query: 395 TPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 454
                   I  L      + A +++  + ENG L    + N +  GL    + S   +  
Sbjct: 440 DVWTHNIMIRGLCKRGLLDEASKLFREMDENGCLRNGCTYNTITQGLLQNNKTSRAIQLL 499

Query: 455 EEMLNR 460
           EEML R
Sbjct: 500 EEMLAR 505



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 72/321 (22%), Positives = 141/321 (43%), Gaps = 24/321 (7%)

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI----VDPDGDS 219
           D+A+ SF  M        +     LL++I + ++ ++     L+  KK+    + PD  +
Sbjct: 38  DDALSSFHRMLHMHPPPPIFEFAKLLTSIAKMKHYST----VLSLSKKMDSFGIPPDVYT 93

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG----KQVDEALK 275
             I++  +     V+ A     +++ +    P+      TF  TL+RG     ++ EAL 
Sbjct: 94  LTIVINSFCHLNRVDFALSVLAKIL-KLGHQPD----TATF-TTLVRGLCVVGKIGEALD 147

Query: 276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGL 335
               M GE   P +  +   ++ L K    T A+ L+  M+  G +  P++  YN++I  
Sbjct: 148 VFDKMVGEGFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGIS--PDIFTYNSLIHA 205

Query: 336 LCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 395
           LCN  +  +V    ++MV     P+ ++ N++ + L K  +V E       MI+   +P 
Sbjct: 206 LCNLCEWKHVTTLLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPD 265

Query: 396 PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 455
            +  A  +       E + A+++++ ++ NG +    S N L+ G   + R+       E
Sbjct: 266 VVTYAALMDGHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFE 325

Query: 456 EMLNRRI----LIYEVTMHKL 472
           EM  + +    + Y   +H L
Sbjct: 326 EMCRQELIPNTMTYSTLIHGL 346



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 89/212 (41%), Gaps = 2/212 (0%)

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY 329
           +D+AL     M   +  P +  F+  L  + K+   +  + L   M    F + P++   
Sbjct: 37  LDDALSSFHRMLHMHPPPPIFEFAKLLTSIAKMKHYSTVLSLSKKM--DSFGIPPDVYTL 94

Query: 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389
             VI   C+ + VD       +++  G  PD+ T+  +   L    ++ E    F +M+ 
Sbjct: 95  TIVINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVG 154

Query: 390 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 449
             +QP  +   T +  L    +   A+ +++ ++  GI P   + N L+  L NL     
Sbjct: 155 EGFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKH 214

Query: 450 VRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
           V     EM+  +I+   V+++ +  A   E +
Sbjct: 215 VTTLLNEMVKSKIMPNVVSLNIVVDALCKEGK 246


>gi|116789117|gb|ABK25122.1| unknown [Picea sitchensis]
          Length = 572

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 163/359 (45%), Gaps = 13/359 (3%)

Query: 66  DDIESALACTGIIPTPDLVHEVLQ-LSYDSPSSAVDFFRWAGRGQRLSPYA--WNLMVDV 122
           ++  +AL   G IP+P+LV ++L+ L YD   +A   F+WAG     S     ++ M+ +
Sbjct: 124 EEARTALDDCGFIPSPNLVQKLLRRLQYDG-KAAFRVFQWAGSQPDYSHTVSVYHTMISI 182

Query: 123 LGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDV 182
           LG + +F++ W  +R M E  +++  T   +   Y  A    +A+ +F  M    +  D 
Sbjct: 183 LGVHRKFDKGWGLIRKMHERAMVNRQTLMIMIKRYAAAHDARKAIKTFHAMDKFKLAADS 242

Query: 183 VAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW-EKEGNVEEANKTFG 241
                LL A+CR       A E ++  KK    +  SF ++L GW     +V +  + + 
Sbjct: 243 DDFLCLLCALCRNMF-VEEAEELIHFNKKCYPLETKSFNVILYGWCNIFVDVYQVKRLWE 301

Query: 242 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
           EM       P+   +Y T +    +  +  + ++    MK +   P LK ++  + +L K
Sbjct: 302 EM-SNLCITPD-AFSYTTVICCFSKAGKFYDVVRLYDEMKKKGFTPNLKVYNAVIYVLSK 359

Query: 302 LNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS 361
                 A+ L++ +  +GF+  PN + Y  +I LLC     +  + + D+M+  G  P  
Sbjct: 360 ERCVKEALNLFNKIREMGFH--PNAVTYTYLIYLLCRTWKPEEAYSYLDKMIMEGFVPTI 417

Query: 362 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 420
             Y+  F   ++N+    + K F +M +N   PT      +I       + E A ++WN
Sbjct: 418 DIYHAFFR-FVENEGA--ICKLFDKMFENGCAPTMETYIMSIRRCCSWSDYENAFKLWN 473



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 59/276 (21%), Positives = 113/276 (40%), Gaps = 18/276 (6%)

Query: 162 KYDEAVMSFDVMSMHGVEQD---VVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD 218
           +YD    +F V    G + D    V+V   + +I     +  +    + ++ +    +  
Sbjct: 150 QYD-GKAAFRVFQWAGSQPDYSHTVSVYHTMISILGVHRKFDKGWGLIRKMHERAMVNRQ 208

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           +  I+++ +    +  +A KTF  M ++F+   +    +   L  L R   V+EA + + 
Sbjct: 209 TLMIMIKRYAAAHDARKAIKTFHAM-DKFKLAADSD-DFLCLLCALCRNMFVEEAEELIH 266

Query: 279 VMKGENCFP-TLKFFSNAL----DILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
             K   C+P   K F+  L    +I V   D     +LW+ M  +   + P+   Y  VI
Sbjct: 267 FNK--KCYPLETKSFNVILYGWCNIFV---DVYQVKRLWEEMSNLC--ITPDAFSYTTVI 319

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
                     +V R +D+M   G  P+   YN +   L K + V E    F+++ +  + 
Sbjct: 320 CCFSKAGKFYDVVRLYDEMKKKGFTPNLKVYNAVIYVLSKERCVKEALNLFNKIREMGFH 379

Query: 394 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
           P  +     I +L    +PE A    + ++  G +P
Sbjct: 380 PNAVTYTYLIYLLCRTWKPEEAYSYLDKMIMEGFVP 415


>gi|224107985|ref|XP_002314678.1| predicted protein [Populus trichocarpa]
 gi|222863718|gb|EEF00849.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 105/404 (25%), Positives = 176/404 (43%), Gaps = 53/404 (13%)

Query: 31  NPHRPTRPRFPTHLDAPYISSSARIICEILA--HASSDDIESALACTGIIPTPDLVHEVL 88
           NP+  T    P+ L      S+A  + EIL   ++S   +  AL  +GI  T +LV ++L
Sbjct: 36  NPNLETHRNVPSPLLFEPQVSNADKLSEILKKRYSSEAAVVKALNESGIDATNELVSQIL 95

Query: 89  QLSYDSPSS-AVDFFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWNAVRVMKE-DGV 144
            + +DS    A   F WA        +P  ++ M+D+LGK  +F  MW+ V  MK  +G 
Sbjct: 96  -MRFDSHCVVAFGVFIWAKNQTSYVHTPELYDYMIDILGKFKKFSLMWSLVEQMKGLNGY 154

Query: 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ---ENQTSR 201
           +SL T + +      A KY +A+  F  +  +G  +D  A+N L+ A+ ++   E+  S 
Sbjct: 155 VSLATASKVMRRLAKARKYKDAIDVFRGIEKYGASKDREALNVLMDALVKEGDVEDAHSA 214

Query: 202 ALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE--------- 252
            LEF    K  +  D  SF IL+ G+ K      A K   EM E+  ++P+         
Sbjct: 215 FLEF----KDCITLDSSSFNILIHGYCKARMFVVARKIMEEM-EKHGFHPDVVSYSCFIA 269

Query: 253 -------------------------HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
                                    +V+ Y T +  L + +Q++EAL+    MK   C P
Sbjct: 270 AYCEQKDFRNVEAVFDEMQEKGCKPNVITYTTVMHALGKARQLNEALEVYEKMKRNGCLP 329

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMVGI-GFNLMPNLIMYNAVIGLLCNNDDVDNVF 346
             KF+S+ + +   L+ S      WD+   +    +  NL +YN +I   C +    +  
Sbjct: 330 DSKFYSSLIYV---LSQSGRIKDAWDVFEDMEKQGVCRNLWVYNTMISSACAHSQGGSAL 386

Query: 347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 390
           +  ++M      PD  TY  + +   + K +  ++     M KN
Sbjct: 387 KLLERMEGDSCKPDVKTYAPLLKMCCRRKSIKLLKFLLSHMFKN 430



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 49/111 (44%)

Query: 347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406
           +  ++M  HG  PD ++Y+       + K    VE  F EM +   +P  +   T +  L
Sbjct: 247 KIMEEMEKHGFHPDVVSYSCFIAAYCEQKDFRNVEAVFDEMQEKGCKPNVITYTTVMHAL 306

Query: 407 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
             A +   A+E++  +  NG LP     + L+  L   GR+ D     E+M
Sbjct: 307 GKARQLNEALEVYEKMKRNGCLPDSKFYSSLIYVLSQSGRIKDAWDVFEDM 357


>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
 gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
          Length = 735

 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/356 (23%), Positives = 166/356 (46%), Gaps = 5/356 (1%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAG 161
           R    G +     +N +V+ + ++G      + +R M+E  V + + T+++I DS C  G
Sbjct: 183 RMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDG 242

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221
             D A+  F  M   G++  VV  NSL+  +C+       AL   + V + + P+  +F 
Sbjct: 243 CIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFN 302

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           +LL+ + KEG ++EAN+ + EM+ R   +P +++ Y T +       ++ EA   L +M 
Sbjct: 303 VLLDVFVKEGKLQEANELYKEMITR-GISP-NIITYNTLMDGYCMQNRLSEANNMLDLMV 360

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
              C P +  F++ +     +      ++++  +   G  L+ N + Y+ ++   C +  
Sbjct: 361 RNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRG--LVANAVTYSILVQGFCQSGK 418

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
           +      F +MV HG  PD +TY ++ + L  N ++ +  + F ++ K++     +   T
Sbjct: 419 IKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTT 478

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
            I  +    + E A  ++  +   G+ P   +   ++ GL   G LS+      +M
Sbjct: 479 IIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKM 534



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/368 (22%), Positives = 167/368 (45%), Gaps = 11/368 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y  N+M++   +  +    ++ + +VMK        TF ++       GK  EAV+  D 
Sbjct: 124 YTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDR 183

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEG 231
           M  +G + DVV  NS+++ ICR    TS AL+ L ++ ++ V  D  +++ +++   ++G
Sbjct: 184 MVENGCQPDVVTYNSIVNGICRS-GDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDG 242

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            ++ A   F EM    +     V+ Y + +  L +  + ++    L+ M      P +  
Sbjct: 243 CIDAAISLFKEM--ETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVIT 300

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           F+  LD+ VK      A +L+  M+  G +  PN+I YN ++   C  + +       D 
Sbjct: 301 FNVLLDVFVKEGKLQEANELYKEMITRGIS--PNIITYNTLMDGYCMQNRLSEANNMLDL 358

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           MV +   PD +T+  + +     KRV +  K F  + K       +  +  +     + +
Sbjct: 359 MVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGK 418

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR----ILIYEV 467
            ++A E++  ++ +G+LP   +   LL GL + G+L       E++   +    I++Y  
Sbjct: 419 IKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTT 478

Query: 468 TMHKLKKA 475
            +  + K 
Sbjct: 479 IIEGMCKG 486



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/297 (20%), Positives = 127/297 (42%), Gaps = 7/297 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N+++DV  K G+ ++     + M   G+  ++ T+ ++ D YC   +  EA    D+M
Sbjct: 300 TFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLM 359

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
             +    D+V   SL+   C  +        F N  K+ +  +  +++IL++G+ + G +
Sbjct: 360 VRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKI 419

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           + A + F EMV      P+ V+ Y   L  L    ++++AL+    ++       +  ++
Sbjct: 420 KLAEELFQEMVSHGVL-PD-VMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYT 477

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGF-NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
             ++ + K      A   W++   +    + PN++ Y  +I  LC    +        +M
Sbjct: 478 TIIEGMCKGGKVEDA---WNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKM 534

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 409
              G  P+  TYN +    +++  +    K   EM    +     +    I MLL A
Sbjct: 535 EEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLLSA 591



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/332 (20%), Positives = 129/332 (38%), Gaps = 41/332 (12%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           SL  F+  F +     +++  +     + ++G+  ++  +N +++  CR   +T  A   
Sbjct: 87  SLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRC-CKTCFAYSV 145

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L +V K+  +PD  +F  L++G   EG V EA      MVE     P+ V+ Y + +  +
Sbjct: 146 LGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVEN-GCQPD-VVTYNSIVNGI 203

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
            R      AL  LR M+  N                                     +  
Sbjct: 204 CRSGDTSLALDLLRKMEERN-------------------------------------VKA 226

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           ++  Y+ +I  LC +  +D     F +M   G     +TYN +   L K  + ++     
Sbjct: 227 DVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLL 286

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
            +M+  E  P  +     + + +   + + A E++  ++  GI P   + N L+ G    
Sbjct: 287 KDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQ 346

Query: 445 GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
            RLS+     + M+  +     VT   L K +
Sbjct: 347 NRLSEANNMLDLMVRNKCSPDIVTFTSLIKGY 378


>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 718

 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/382 (24%), Positives = 167/382 (43%), Gaps = 7/382 (1%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAG 161
           +  G G  L+  +  ++V+   K GR E+    V  + E+G      TF S+ + +C  G
Sbjct: 218 QMLGYGCLLTNVSVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIG 277

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSF 220
             ++A+   D M   G + DV   NSL+S +C+   +  +A+E L + + +   P+  ++
Sbjct: 278 NVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKL-GEFEKAIEILQQMILRECSPNTVTY 336

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
             L+    KE  +E A      +V +    P+ V  + T +  L   K  D A++    M
Sbjct: 337 NTLISALCKENEIEAATDLARILVSK-GLLPD-VCTFNTLIQGLCLSKNQDIAMEMFEEM 394

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
           K + C P    +S  +D L        A+ L   M   G     N ++YN +I  LC + 
Sbjct: 395 KNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSG--CARNAVVYNTLIDGLCKSR 452

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
            +++    FDQM   G    S+TYN + + L KNKRV E  +   +MI    +P      
Sbjct: 453 RIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYN 512

Query: 401 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           + +T      + E A +I   +  NG  P   +   L+ GL   GR+    +    +  +
Sbjct: 513 SLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMK 572

Query: 461 RILIYEVTMHKLKKAFYNESRS 482
            I++     + + +A +   R+
Sbjct: 573 GIVLTPHAYNPVIQALFMRKRT 594



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 105/476 (22%), Positives = 202/476 (42%), Gaps = 60/476 (12%)

Query: 23  TTTSPTSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPD 82
           TT S T+H+P  P      T L     SSS   I  +L    S         +G IP   
Sbjct: 45  TTPSSTTHHPLPPNE----TLLLQLTQSSSFDSITTLLKQLKS---------SGSIPNAT 91

Query: 83  LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYA--WNLMVDVLGKNGRFE--QMWNAVRV 138
               ++Q S+ +     +  +         P    +N+ ++ L ++ + +  +M ++ ++
Sbjct: 92  TFATLIQ-SFTNFHEIENLLKILENELGFKPDTNFYNIALNALVEDNKLKLVEMLHS-KM 149

Query: 139 MKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDV---------------- 182
           + E  VL + TF  +  + C A +   A++  + M+ HG++ D                 
Sbjct: 150 VNEGIVLDVSTFNVLIKALCKAHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIEEGDL 209

Query: 183 -------------------VAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAI 222
                              V+V  L++  C+ E +   AL F+  V ++   PD  +F  
Sbjct: 210 NGALKMKKQMLGYGCLLTNVSVKVLVNGFCK-EGRVEEALRFVLEVSEEGFSPDQVTFNS 268

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+ G+ + GNV +A      M+E+  ++P+ V  Y + +  + +  + ++A++ L+ M  
Sbjct: 269 LVNGFCRIGNVNDALDIVDFMIEK-GFDPD-VYTYNSLISGMCKLGEFEKAIEILQQMIL 326

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
             C P    ++  +  L K N+   A  L  I+V  G  L+P++  +N +I  LC + + 
Sbjct: 327 RECSPNTVTYNTLISALCKENEIEAATDLARILVSKG--LLPDVCTFNTLIQGLCLSKNQ 384

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
           D     F++M   G  PD  TY+++ + L   +R+ E      EM  +      +   T 
Sbjct: 385 DIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTL 444

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
           I  L  +   E A EI++ +   G+     + N L+ GL    R+ +  +  ++M+
Sbjct: 445 IDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMI 500



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 136/333 (40%), Gaps = 8/333 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N ++  L K    E   +  R++   G+L  + TF ++    C +   D A+  F+ M
Sbjct: 335 TYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEM 394

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGN 232
              G + D    + L+ ++C  E +   AL  L  ++      +   +  L++G  K   
Sbjct: 395 KNKGCKPDEFTYSILIDSLC-YERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRR 453

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +E+A + F +M           + Y T +  L + K+V+EA + +  M  E   P    +
Sbjct: 454 IEDAEEIFDQM--ELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTY 511

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           ++ L    ++ D   A  +   M   G    P++  Y  +IG LC    VD   +    +
Sbjct: 512 NSLLTYFCRVGDIEKAGDIVQTMASNGCE--PDIFTYGTLIGGLCRAGRVDVASKLLRSV 569

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
              G       YN + + L   KR  E  + F EM++    P  L        L +   P
Sbjct: 570 QMKGIVLTPHAYNPVIQALFMRKRTKEGMRLFREMMEKSDPPDALTHKIVFRGLCNGGGP 629

Query: 413 -EIAIEIWNYILENGILPLEASANELLVGLRNL 444
            + AI+    +LE GILP   S   L  GL +L
Sbjct: 630 IQEAIDFTVEMLEKGILPEFPSFGFLAEGLCSL 662



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 138/335 (41%), Gaps = 34/335 (10%)

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M   G+  DV   N L+ A+C+        L         + PD  +F  L++G+ +EG+
Sbjct: 149 MVNEGIVLDVSTFNVLIKALCKAHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIEEGD 208

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLI-----TLIRG----KQVDEALKFLRVMKGE 283
           +  A K   +M           L Y   L       L+ G     +V+EAL+F+  +  E
Sbjct: 209 LNGALKMKKQM-----------LGYGCLLTNVSVKVLVNGFCKEGRVEEALRFVLEVSEE 257

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
              P    F++ ++   ++ +   A+ + D M+  GF+  P++  YN++I  +C   + +
Sbjct: 258 GFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFD--PDVYTYNSLISGMCKLGEFE 315

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
                  QM+     P+++TYN +   L K   +         ++     P      T I
Sbjct: 316 KAIEILQQMILRECSPNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLI 375

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LN 459
             L  +   +IA+E++  +   G  P E + + L+  L    RL +     +EM      
Sbjct: 376 QGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCA 435

Query: 460 RRILIYEVTMHKLKKAFYNESRSMRD---IFDSLE 491
           R  ++Y   +  L K     SR + D   IFD +E
Sbjct: 436 RNAVVYNTLIDGLCK-----SRRIEDAEEIFDQME 465



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 43/219 (19%), Positives = 86/219 (39%), Gaps = 4/219 (1%)

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317
           ET L+ L +    D     L+ +K     P    F+  +      ++  + +++ +  +G
Sbjct: 59  ETLLLQLTQSSSFDSITTLLKQLKSSGSIPNATTFATLIQSFTNFHEIENLLKILENELG 118

Query: 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
                 P+   YN  +  L  ++ +  V     +MV  G   D  T+N++ + L K  ++
Sbjct: 119 ----FKPDTNFYNIALNALVEDNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKALCKAHQL 174

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 437
                   EM  +  +P  +   T +   ++  +   A+++   +L  G L    S   L
Sbjct: 175 RPAILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVL 234

Query: 438 LVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
           + G    GR+ +  RF  E+        +VT + L   F
Sbjct: 235 VNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGF 273



 Score = 45.4 bits (106), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 108/285 (37%), Gaps = 47/285 (16%)

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF---LITLIRGKQVD 271
           PD + + I L        VE+      EM+     N   VL   TF   +  L +  Q+ 
Sbjct: 121 PDTNFYNIALNAL-----VEDNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKALCKAHQLR 175

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA 331
            A+  L  M      P    F+  +   ++  D   A+++   M+G G  L+ N+ +   
Sbjct: 176 PAILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGC-LLTNVSVKVL 234

Query: 332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFE--CLIKNK-------------- 375
           V G  C    V+   RF  ++   G  PD +T+N +    C I N               
Sbjct: 235 VNGF-CKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKG 293

Query: 376 ----------------RVHEVEK---FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 416
                           ++ E EK      +MI  E  P  +   T I+ L   +E E A 
Sbjct: 294 FDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENEIEAAT 353

Query: 417 EIWNYILENGILPLEASANELLVGLRNLGRLSDVR-RFAEEMLNR 460
           ++   ++  G+LP   + N L+ GL  L +  D+     EEM N+
Sbjct: 354 DLARILVSKGLLPDVCTFNTLIQGL-CLSKNQDIAMEMFEEMKNK 397


>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
          Length = 1244

 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 165/359 (45%), Gaps = 11/359 (3%)

Query: 103  RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMK----EDGVLSLPTFASIFDSYC 158
            R   +G +     + ++V+ L K G  +  +N +  M+    E GVL    + +I D  C
Sbjct: 825  RMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVL---IYNTIIDGLC 881

Query: 159  GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD 218
                 D+A+  F  M   G+  +VV  +SL+S +C     +  +    + +++ ++PD  
Sbjct: 882  KYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVF 941

Query: 219  SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
            +F+ L++ + KEG + EA K + EMV+R   +P  ++ Y + +       ++DEA +   
Sbjct: 942  TFSALIDAFVKEGKLVEAEKLYDEMVKR-SIDPS-IVTYSSLINGFCMHDRLDEAKQMFE 999

Query: 279  VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
             M  ++CFP +  ++  +    K       ++++  M   G  L+ N + YN +I  L  
Sbjct: 1000 FMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRG--LVGNTVTYNILIQGLFQ 1057

Query: 339  NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
              D D     F +MV  G  P+ +TYN + + L KN ++ +    F  + +++ +PT   
Sbjct: 1058 AGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYT 1117

Query: 399  CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
                I  +  A + E   +++  +   G+ P   + N ++ G    G   +     +EM
Sbjct: 1118 YNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEM 1176



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/371 (24%), Positives = 168/371 (45%), Gaps = 42/371 (11%)

Query: 114  YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
            Y ++++++   +  +       + ++MK     ++ T +S+ + YC + +  EAV   D 
Sbjct: 731  YTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQ 790

Query: 173  MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEG 231
            M + G + + V  N+L+  +    N+ S A+  ++R V K   PD  ++ +++ G  K G
Sbjct: 791  MFVTGYQPNTVTFNTLIHGLFLH-NKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRG 849

Query: 232  NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-------- 283
            + + A     +M E+ +  P  VL Y T +  L + K +D+AL   + M+ +        
Sbjct: 850  DTDLAFNLLNKM-EQGKLEP-GVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVT 907

Query: 284  -----NCF----------------------PTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
                 +C                       P +  FS  +D  VK      A +L+D MV
Sbjct: 908  YSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMV 967

Query: 317  GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
                +  P+++ Y+++I   C +D +D   + F+ MV    FPD +TYN + +   K KR
Sbjct: 968  KRSID--PSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKR 1025

Query: 377  VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 436
            V E  + F EM +       +     I  L  A + ++A EI+  ++ +G+ P   + N 
Sbjct: 1026 VEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNT 1085

Query: 437  LLVGLRNLGRL 447
            LL GL   G+L
Sbjct: 1086 LLDGLCKNGKL 1096



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 143/320 (44%), Gaps = 4/320 (1%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           + +I DS C   + ++A   F  +   G+  +VV   +L++ +C     +  A    + +
Sbjct: 296 YNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMI 355

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
           KK + P+  +++ LL+ + K G V EA + F EMV R   +P+ ++ Y + +  L    +
Sbjct: 356 KKKITPNVITYSALLDAFVKNGKVLEAKELFEEMV-RMSIDPD-IVTYSSLINGLCLHDR 413

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY 329
           +DEA +   +M  + C   +  ++  ++   K       ++L+  M   G  L+ N + Y
Sbjct: 414 IDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRG--LVSNTVTY 471

Query: 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389
           N +I       DVD    FF QM F G  PD  TYN++   L  N  + +    F +M K
Sbjct: 472 NTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQK 531

Query: 390 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 449
            E     +   T I  +    + E A  ++  +   G+ P   +   ++ GL   G L +
Sbjct: 532 REMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHE 591

Query: 450 VRRFAEEMLNRRILIYEVTM 469
           V     +M    ++  + T+
Sbjct: 592 VEALYTKMKQEGLMKNDCTL 611



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 146/317 (46%), Gaps = 6/317 (1%)

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206
           L TF  + + +C   +   A+     M   G E D V + SL++  CR+ N+ S A+  +
Sbjct: 223 LYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRR-NRVSDAVSLV 281

Query: 207 NRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
           +++ +I   PD  ++  +++   K   V +A   F E +ER    P +V+ Y   +  L 
Sbjct: 282 DKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKE-IERKGIRP-NVVTYTALVNGLC 339

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN 325
              +  +A + L  M  +   P +  +S  LD  VK      A +L++ MV +  +  P+
Sbjct: 340 NSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSID--PD 397

Query: 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 385
           ++ Y+++I  LC +D +D   + FD MV  G   D ++YN +     K KRV +  K F 
Sbjct: 398 IVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFR 457

Query: 386 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
           EM +       +   T I     A + + A E ++ +   GI P   + N LL GL + G
Sbjct: 458 EMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNG 517

Query: 446 RLSDVRRFAEEMLNRRI 462
            L       E+M  R +
Sbjct: 518 ELEKALVIFEDMQKREM 534



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 72/334 (21%), Positives = 143/334 (42%), Gaps = 41/334 (12%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  F  +  +     KYD  +     M + G+  D+   N +++  C    Q S AL  
Sbjct: 187 SIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCC-FQVSLALSI 245

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L ++ K+  +PD  +   L+ G+ +   V +A     +MVE   + P+ ++AY   + +L
Sbjct: 246 LGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVE-IGYKPD-IVAYNAIIDSL 303

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
            + K+V++A  F + ++ +                                      + P
Sbjct: 304 CKTKRVNDAFDFFKEIERKG-------------------------------------IRP 326

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           N++ Y A++  LCN+    +  R    M+     P+ +TY+ + +  +KN +V E ++ F
Sbjct: 327 NVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELF 386

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
            EM++    P  +  ++ I  L   D  + A ++++ ++  G L    S N L+ G    
Sbjct: 387 EEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKA 446

Query: 445 GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 478
            R+ D  +   EM  R ++   VT + L + F+ 
Sbjct: 447 KRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQ 480



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 75/352 (21%), Positives = 153/352 (43%), Gaps = 10/352 (2%)

Query: 146  SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
            S+  F+ +  +     K+D  +   + M   G+  +    + L++  CR+ +Q   AL  
Sbjct: 694  SIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRR-SQLPLALAV 752

Query: 206  LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEM-VERFEWNPEHVLAYETFLIT 263
            L ++ K+  +P+  + + LL G+     + EA     +M V  ++ N    + + T +  
Sbjct: 753  LGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPN---TVTFNTLIHG 809

Query: 264  LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLM 323
            L    +  EA+  +  M  + C P L  +   ++ L K  D+  A  L + M      L 
Sbjct: 810  LFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQ--GKLE 867

Query: 324  PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
            P +++YN +I  LC    +D+    F +M   G  P+ +TY+ +  CL    R  +  + 
Sbjct: 868  PGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRL 927

Query: 384  FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
              +MI+ +  P     +  I   +   +   A ++++ +++  I P   + + L+ G   
Sbjct: 928  LSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCM 987

Query: 444  LGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF--YNESRSMRDIFDSLERR 493
              RL + ++  E M+++      VT + L K F  Y       ++F  + +R
Sbjct: 988  HDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQR 1039



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 79/360 (21%), Positives = 153/360 (42%), Gaps = 11/360 (3%)

Query: 92   YDSPSSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPT 149
            Y     A++ F+    +G R +   ++ ++  L   GR+      +  M E  +   + T
Sbjct: 883  YKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFT 942

Query: 150  FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE--NQTSRALEFLN 207
            F+++ D++   GK  EA   +D M    ++  +V  +SL++  C  +  ++  +  EF+ 
Sbjct: 943  FSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFM- 1001

Query: 208  RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
             V K   PD  ++  L++G+ K   VEE  + F EM +R      + + Y   +  L + 
Sbjct: 1002 -VSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVG--NTVTYNILIQGLFQA 1058

Query: 268  KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
               D A +  + M  +   P +  ++  LD L K      A+ +++ +      + P + 
Sbjct: 1059 GDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQR--SKMEPTIY 1116

Query: 328  MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
             YN +I  +C    V++ +  F  +   G  PD + YN +     +     E +  F EM
Sbjct: 1117 TYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEM 1176

Query: 388  IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
             ++   P      T I   L   + E + E+   +   G    +AS   L+  + + GRL
Sbjct: 1177 KEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAG-DASTIGLVTNMLHDGRL 1235



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 95/232 (40%), Gaps = 4/232 (1%)

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL 322
           T +R  ++++A+     M     FP++  F+  L  +VKL      + L   M  +G  +
Sbjct: 162 TRLRDIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLG--I 219

Query: 323 MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
             +L  +N VI   C    V        +M+  G  PD +T   +     +  RV +   
Sbjct: 220 RNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVS 279

Query: 383 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 442
              +M++  ++P  +     I  L        A + +  I   GI P   +   L+ GL 
Sbjct: 280 LVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLC 339

Query: 443 NLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSM--RDIFDSLER 492
           N  R SD  R   +M+ ++I    +T   L  AF    + +  +++F+ + R
Sbjct: 340 NSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVR 391



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 78/386 (20%), Positives = 159/386 (41%), Gaps = 38/386 (9%)

Query: 97  SAVDFFRWAGRGQRLSPYAW--NLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASI 153
           S +DFF        +SP  W  N+++  L  NG  E+       M K +  L + T+ ++
Sbjct: 492 SQMDFFG-------ISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTV 544

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV 213
               C  GK +EA   F  +S+ G++ D+V   +++S +C +          L+ V+ + 
Sbjct: 545 IRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKG--------LLHEVEALY 596

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
                   +  +    +G++  + +   +M+            Y   L+  I+     +A
Sbjct: 597 TKMKQEGLMKNDCTLSDGDITLSAELIKKMLS---------CGYAPSLLKDIKSGVCKKA 647

Query: 274 LKFLRVMKGENCFPTL-KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAV 332
           L  LR   G+  +    K   N L  L KL+D   AV L+  MV       P++I ++ +
Sbjct: 648 LSLLRAFSGKTSYDYREKLSRNGLSEL-KLDD---AVALFGEMVK--SRPFPSIIEFSKL 701

Query: 333 IGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 392
           +  +   +  D V    +QM   G   +  TY+++  C  +  ++        +M+K  +
Sbjct: 702 LSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGY 761

Query: 393 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 452
           +P  +  ++ +     +     A+ + + +   G  P   + N L+ GL    + S+   
Sbjct: 762 EPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMA 821

Query: 453 FAEEMLNRR----ILIYEVTMHKLKK 474
             + M+ +     ++ Y V ++ L K
Sbjct: 822 LIDRMVAKGCQPDLVTYGVVVNGLCK 847



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 70/360 (19%), Positives = 139/360 (38%), Gaps = 18/360 (5%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++N +++   K  R E      R M + G++S   T+ ++   +  AG  D+A   F  M
Sbjct: 435 SYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQM 494

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G+  D+   N LL  +C         + F +  K+ +D D  ++  ++ G  K G V
Sbjct: 495 DFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKV 554

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-----NCFPT 288
           EEA   F  +  +    P+ ++ Y T +  L     + E       MK E     +C  +
Sbjct: 555 EEAWSLFCSLSLK-GLKPD-IVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTLS 612

Query: 289 LKFFSNALDILVKLNDSTHAVQLW-DIMVGIGFNLMPNLIMYNAVIGL-----LCNND-- 340
               + + +++ K+    +A  L  DI  G+    +  L  ++          L  N   
Sbjct: 613 DGDITLSAELIKKMLSCGYAPSLLKDIKSGVCKKALSLLRAFSGKTSYDYREKLSRNGLS 672

Query: 341 --DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
              +D+    F +MV    FP  + ++ +   + K  +   V     +M           
Sbjct: 673 ELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYT 732

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
            +  I       +  +A+ +   +++ G  P   + + LL G  +  R+S+     ++M 
Sbjct: 733 YSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMF 792


>gi|147798989|emb|CAN61637.1| hypothetical protein VITISV_008458 [Vitis vinifera]
          Length = 708

 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/394 (22%), Positives = 172/394 (43%), Gaps = 8/394 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCG 159
           F     RG      ++ LMV      GR  +    +  M E G ++   T   I D++C 
Sbjct: 212 FVEMCQRGVSPDCVSFKLMVVACCNMGRVLEAEKWLNAMVERGFIVDNATCTLIIDAFCQ 271

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGD 218
            G  +  V  F  M   G+  +V+   +L++ +C+Q     +A E L   V++   P+  
Sbjct: 272 KGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQ-GSIKQAFELLEEMVRRGWKPNVY 330

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           +   L++G  K+G  E+A + F ++V    + P +V  Y   +    +  +++ A   L 
Sbjct: 331 THTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKP-NVHTYTAMINGYCKEDKLNRAEMLLS 389

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            M+ +   P    ++  +D   K+ +   A +L D+M   GF+  PN+  YNA+I  LC 
Sbjct: 390 RMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFS--PNIYTYNAIIDGLCK 447

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
              +D  +R  +++  HG   D +TY ++     +    +    FF++M+K  + P   +
Sbjct: 448 KGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHS 507

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
             T I+      + + +  ++   +  G++P + +   ++ G    G  S   +  + M 
Sbjct: 508 YTTLISXFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMS 567

Query: 459 NRRILIYEVTMHKLKKAFYNESR--SMRDIFDSL 490
           N       +T   L      ES+    R+++D++
Sbjct: 568 NHGCAPDSITYGALISGLCKESKLDDARNLYDAM 601


>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
 gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
          Length = 552

 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/409 (22%), Positives = 183/409 (44%), Gaps = 13/409 (3%)

Query: 98  AVDFFRWA-GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-----SLPTFA 151
           A D F  A  +G   +   +N M+D L K GR E   NA+ +  +  +      ++ T++
Sbjct: 49  AYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIE---NALTLYDDMAIHFGFRPTVVTYS 105

Query: 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK- 210
           ++ D  C   + D+     + M+  G   + V  N+L++A+  Q  ++  A   L ++  
Sbjct: 106 TLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQ-GRSKEAFSLLEQMAA 164

Query: 211 KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270
               P+  +F ++++G  KEG +E A +   EM          V+ + + L  L + +++
Sbjct: 165 NGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRI 224

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYN 330
            +A    +      C P +  +S  +D L K+     A+QL   MV +G     N + Y+
Sbjct: 225 LDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCR--ANTVTYS 282

Query: 331 AVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 390
            V+  L     +++      QM   G  PD++TYN + +   K +R+ E      EM++ 
Sbjct: 283 TVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEA 342

Query: 391 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 450
            + P+ +   T    L  +   + A+EI +Y+   G  P   + + ++ GL   GR+++ 
Sbjct: 343 GFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEA 402

Query: 451 RRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQM 499
             + E+M    ++   V  +        ++  + + ++ LER  +  ++
Sbjct: 403 LGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRI 451



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 160/350 (45%), Gaps = 8/350 (2%)

Query: 111 LSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAV 167
           LSP    +N ++D L K  R     N  +   E G   ++ T++++ D      K DEA+
Sbjct: 204 LSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEAL 263

Query: 168 MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEG 226
                M   G   + V  ++++  + +   +   A+  L +++     PD  ++  L++G
Sbjct: 264 QLLAKMVELGCRANTVTYSTVVDGLLKV-GRMEDAVVVLRQMRDAGCLPDAVTYNTLIDG 322

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
           + K   + EA     EM+E   ++P  V+ Y T    L R  + DEA++ L  M    C 
Sbjct: 323 FFKRQRLREAVGLLREMLEA-GFHPS-VVTYTTLCHGLCRSGRFDEAVEILDYMAARGCA 380

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346
           P    +S+ +D L K    T A+  ++ M      + P++I Y+A+I  LC    +D  +
Sbjct: 381 PNAITYSSIVDGLCKAGRVTEALGYFEKMARDEV-VAPHVIAYSALIDGLCKAGKIDEAY 439

Query: 347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406
            F ++M+  G  PD +T++++   L    R+    + F  M +    P  +  AT +  L
Sbjct: 440 EFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRL 499

Query: 407 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 456
             A   + A +++  +  +G+ P  ++   ++ GL  + R  D +R  +E
Sbjct: 500 CRASRVDEAFDLFQQMRSDGLSPDRSTRRTMIHGLLEVNRDEDAKRIQDE 549



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 77/362 (21%), Positives = 140/362 (38%), Gaps = 40/362 (11%)

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI 212
           + D  C + K D+A+  F  M    +  DVV   +L+  + +Q         F     K 
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG 60

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
             P   ++  +++G  K G +E A   + +M   F + P  V+ Y T +  L R  +VD+
Sbjct: 61  CHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPT-VVTYSTLIDGLCRDHEVDK 119

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF------------ 320
             K L  M G  C P    ++  ++ L+    S  A  L + M   G             
Sbjct: 120 GCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIK 179

Query: 321 -----------------------NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGA 357
                                   L P++I +N+V+  LC    + +    F + +  G 
Sbjct: 180 GLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGC 239

Query: 358 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 417
            P+ +TY+ + + L K  ++ E  +   +M++   +   +  +T +  LL     E A+ 
Sbjct: 240 RPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVV 299

Query: 418 IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR----RILIYEVTMHKLK 473
           +   + + G LP   + N L+ G     RL +      EML       ++ Y    H L 
Sbjct: 300 VLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLC 359

Query: 474 KA 475
           ++
Sbjct: 360 RS 361


>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial; Flags: Precursor
          Length = 602

 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/356 (23%), Positives = 166/356 (46%), Gaps = 5/356 (1%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAG 161
           R    G +     +N +V+ + ++G      + +R M+E  V + + T+++I DS C  G
Sbjct: 183 RMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDG 242

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221
             D A+  F  M   G++  VV  NSL+  +C+       AL   + V + + P+  +F 
Sbjct: 243 CIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFN 302

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           +LL+ + KEG ++EAN+ + EM+ R   +P +++ Y T +       ++ EA   L +M 
Sbjct: 303 VLLDVFVKEGKLQEANELYKEMITR-GISP-NIITYNTLMDGYCMQNRLSEANNMLDLMV 360

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
              C P +  F++ +     +      ++++  +   G  L+ N + Y+ ++   C +  
Sbjct: 361 RNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRG--LVANAVTYSILVQGFCQSGK 418

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
           +      F +MV HG  PD +TY ++ + L  N ++ +  + F ++ K++     +   T
Sbjct: 419 IKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTT 478

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
            I  +    + E A  ++  +   G+ P   +   ++ GL   G LS+      +M
Sbjct: 479 IIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKM 534



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/368 (22%), Positives = 167/368 (45%), Gaps = 11/368 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y  N+M++   +  +    ++ + +VMK        TF ++       GK  EAV+  D 
Sbjct: 124 YTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDR 183

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEG 231
           M  +G + DVV  NS+++ ICR    TS AL+ L ++ ++ V  D  +++ +++   ++G
Sbjct: 184 MVENGCQPDVVTYNSIVNGICRS-GDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDG 242

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            ++ A   F EM    +     V+ Y + +  L +  + ++    L+ M      P +  
Sbjct: 243 CIDAAISLFKEM--ETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVIT 300

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           F+  LD+ VK      A +L+  M+  G +  PN+I YN ++   C  + +       D 
Sbjct: 301 FNVLLDVFVKEGKLQEANELYKEMITRGIS--PNIITYNTLMDGYCMQNRLSEANNMLDL 358

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           MV +   PD +T+  + +     KRV +  K F  + K       +  +  +     + +
Sbjct: 359 MVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGK 418

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR----ILIYEV 467
            ++A E++  ++ +G+LP   +   LL GL + G+L       E++   +    I++Y  
Sbjct: 419 IKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTT 478

Query: 468 TMHKLKKA 475
            +  + K 
Sbjct: 479 IIEGMCKG 486



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 61/298 (20%), Positives = 127/298 (42%), Gaps = 7/298 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N+++DV  K G+ ++     + M   G+  ++ T+ ++ D YC   +  EA    D+M
Sbjct: 300 TFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLM 359

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
             +    D+V   SL+   C  +        F N  K+ +  +  +++IL++G+ + G +
Sbjct: 360 VRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKI 419

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           + A + F EMV      P+ V+ Y   L  L    ++++AL+    ++       +  ++
Sbjct: 420 KLAEELFQEMVSHGVL-PD-VMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYT 477

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGF-NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
             ++ + K      A   W++   +    + PN++ Y  +I  LC    +        +M
Sbjct: 478 TIIEGMCKGGKVEDA---WNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKM 534

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
              G  P+  TYN +    +++  +    K   EM    +     +    I MLL  +
Sbjct: 535 EEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLLSGE 592



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/332 (20%), Positives = 129/332 (38%), Gaps = 41/332 (12%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           SL  F+  F +     +++  +     + ++G+  ++  +N +++  CR   +T  A   
Sbjct: 87  SLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRC-CKTCFAYSV 145

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L +V K+  +PD  +F  L++G   EG V EA      MVE     P+ V+ Y + +  +
Sbjct: 146 LGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVEN-GCQPD-VVTYNSIVNGI 203

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
            R      AL  LR M+  N                                     +  
Sbjct: 204 CRSGDTSLALDLLRKMEERN-------------------------------------VKA 226

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           ++  Y+ +I  LC +  +D     F +M   G     +TYN +   L K  + ++     
Sbjct: 227 DVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLL 286

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
            +M+  E  P  +     + + +   + + A E++  ++  GI P   + N L+ G    
Sbjct: 287 KDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQ 346

Query: 445 GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
            RLS+     + M+  +     VT   L K +
Sbjct: 347 NRLSEANNMLDLMVRNKCSPDIVTFTSLIKGY 378


>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
          Length = 585

 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 139/294 (47%), Gaps = 5/294 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           ++ +VD L K G+  +  + V +M   GV  ++ T+ ++ D +C   + DEAV  FD M 
Sbjct: 280 FSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMV 339

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
            +G   +V++ N+L++  C+ +        F    +K + P+  ++  L+ G    G ++
Sbjct: 340 HNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQ 399

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           +A   F EMV   +  P+ +  Y   L  L +   +DEA+  L+ ++G N  P ++ ++ 
Sbjct: 400 DAIALFHEMVAHGQI-PD-LATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTI 457

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
            +D + +  +   A  ++  +   G  L PN+  Y  +I  LC    +D   + F +M  
Sbjct: 458 VIDGMCRAGELEAARDIFSNLSSKG--LRPNVRTYTIMINGLCRRGLLDEANKLFMEMDG 515

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
           +G  PD  TYN I + L++NK      +   EM+   +          + ML D
Sbjct: 516 NGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEMLCD 569



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/334 (24%), Positives = 150/334 (44%), Gaps = 8/334 (2%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F  +  S     +Y       + M   G+  DV  +N L+++ C   N+   A   L ++
Sbjct: 70  FNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSFCHL-NRPGFAFSVLAKI 128

Query: 210 KKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLITLIRG 267
            K+ + PD  +F  L+ G   EG + +A   F +M+ E F+ N   V+ Y T +  L + 
Sbjct: 129 LKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPN---VVTYGTLINGLCKV 185

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
              + A++ LR M+  NC P +  +++ +D L K    T A  L+  MVG G +  P++ 
Sbjct: 186 GNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGIS--PDIF 243

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            Y ++I  LCN  +  +V    +QM+     PD + ++ + + L K  ++ E       M
Sbjct: 244 TYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMM 303

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
           I    +P  +     +       E + A+++++ ++ NG  P   S N L+ G   + R+
Sbjct: 304 IIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRM 363

Query: 448 SDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
                  EEM  + ++   VT + L     +  R
Sbjct: 364 DKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGR 397



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 140/340 (41%), Gaps = 6/340 (1%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F +  G+G     + +  ++  L     ++ +   +  M    ++  +  F+++ D+ C 
Sbjct: 230 FSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCK 289

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
            GK  EA    D+M + GVE +VV  N+L+   C Q         F   V     P+  S
Sbjct: 290 EGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVIS 349

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           +  L+ G+ K   +++A   F EM ++ E  P  V  Y T +  L    ++ +A+     
Sbjct: 350 YNTLINGYCKIQRMDKATYLFEEMCQK-ELIPNTV-TYNTLMHGLCHVGRLQDAIALFHE 407

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
           M      P L  +   LD L K +    A+ L   + G   N+ P++ +Y  VI  +C  
Sbjct: 408 MVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEG--SNMDPDIQIYTIVIDGMCRA 465

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
            +++     F  +   G  P+  TY ++   L +   + E  K F EM  N   P     
Sbjct: 466 GELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTY 525

Query: 400 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 439
            T    LL   E   AI++   +L  G    + S   LLV
Sbjct: 526 NTITQGLLQNKEALRAIQLLQEMLARG-FSADVSTTTLLV 564



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/360 (22%), Positives = 149/360 (41%), Gaps = 9/360 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F +  G G + +   +  +++ L K G        +R M++      +  + SI DS C 
Sbjct: 160 FDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCK 219

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGD 218
             +  EA   F  M   G+  D+    SL+ ++C    +       LN+ +   + PD  
Sbjct: 220 DRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNL-CEWKHVTTLLNQMINSKIMPDVV 278

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            F+ +++   KEG + EA+     M+ R  E N   V+ Y   +       ++DEA+K  
Sbjct: 279 IFSTVVDALCKEGKITEAHDVVDMMIIRGVEPN---VVTYNALMDGHCLQSEMDEAVKVF 335

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337
             M      P +  ++  ++   K+     A  L++ M      L+PN + YN ++  LC
Sbjct: 336 DTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQK--ELIPNTVTYNTLMHGLC 393

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
           +   + +    F +MV HG  PD  TY ++ + L K   + E       +  +   P   
Sbjct: 394 HVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQ 453

Query: 398 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
                I  +  A E E A +I++ +   G+ P   +   ++ GL   G L +  +   EM
Sbjct: 454 IYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEM 513



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/249 (18%), Positives = 94/249 (37%), Gaps = 4/249 (1%)

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +++A  +F  M+      P   + +   L ++ + KQ          M      P +   
Sbjct: 48  LDDALSSFNRMLHMHP--PPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTL 105

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  ++    LN    A  +   ++ +G  L P+   +  +I  LC    + +    FD+M
Sbjct: 106 NILINSFCHLNRPGFAFSVLAKILKLG--LQPDTATFTTLIRGLCVEGKIGDALHLFDKM 163

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
           +  G  P+ +TY  +   L K    +   +    M +   QP  +   + I  L    + 
Sbjct: 164 IGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQV 223

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
             A  +++ ++  GI P   +   L+  L NL     V     +M+N +I+   V    +
Sbjct: 224 TEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTV 283

Query: 473 KKAFYNESR 481
             A   E +
Sbjct: 284 VDALCKEGK 292


>gi|357142605|ref|XP_003572629.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 543

 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 135/300 (45%), Gaps = 7/300 (2%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+ T++ + D+ C    Y +AV+  D M   G E D+V  N L++A+C Q      AL+ 
Sbjct: 194 SVVTYSILLDATCKESGYKQAVVLLDEMRSKGCEPDIVTYNVLINAMCSQ-GDVGEALKV 252

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           LN +      PD  ++  +L+        EEA+K   +M    +  P+ V  +   + +L
Sbjct: 253 LNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSN-DCAPDEV-TFNAVITSL 310

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG--IGFNL 322
            +   V  A K L  M    C P +  +S+ +D L K      A++L   ++   +  N 
Sbjct: 311 CQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRVDEAIKLLKELLAEMVSKNC 370

Query: 323 MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC-LIKNKRVHEVE 381
           +P+ + +N +I  LC     D   +  D+M  HG  PD  TYN I +  L K+ +  E  
Sbjct: 371 IPDQVTFNTIITSLCQKGLFDRAIKVVDEMSEHGCIPDITTYNCIVDGFLCKSCKTEEAL 430

Query: 382 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 441
              + M+ N   P      +    L   DE E AI ++  +   G+ P +   N +L+GL
Sbjct: 431 DLLNLMVSNGLCPDTTTYKSLAFGLSREDEMERAIGMFRRVQAMGLSPDKMLYNAILLGL 490



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 132/301 (43%), Gaps = 16/301 (5%)

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN--QTSRALEFLNRVKKIVDPDGD 218
           G+ D A+     +S  G +  V+  N L+  +C         R +E L     I+     
Sbjct: 75  GELDGALRLVHSISGSGKDPAVIPCNILIKKLCADGRVADAERVVEALGPSATII----- 129

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL-IRGKQVDEALKFL 277
           ++  ++ G+ + GN++ A +    M++   + P+    Y   +  L +RG  +D AL   
Sbjct: 130 TYNTMVNGYCRAGNIDAARR----MIDSVPFAPD-TFTYNPLIRALCVRGCVLD-ALAVF 183

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337
             M    C P++  +S  LD   K +    AV L D M   G    P+++ YN +I  +C
Sbjct: 184 DDMLHRGCSPSVVTYSILLDATCKESGYKQAVVLLDEMRSKGCE--PDIVTYNVLINAMC 241

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
           +  DV    +  + +  +G  PD++TY  + + L  ++R  E +K   +M  N+  P  +
Sbjct: 242 SQGDVGEALKVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDCAPDEV 301

Query: 398 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
                IT L        A ++   + E+G  P   + + ++ GL    R+ +  +  +E+
Sbjct: 302 TFNAVITSLCQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRVDEAIKLLKEL 361

Query: 458 L 458
           L
Sbjct: 362 L 362



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 130/289 (44%), Gaps = 18/289 (6%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVM-----KEDGVLSLPTFASIFDSYCGAGKYDEAVMSF 170
           +N++++ +   G   +    +  +     K D V    T+  +  S C + +++EA    
Sbjct: 233 YNVLINAMCSQGDVGEALKVLNSLPSYGCKPDAV----TYTPVLKSLCSSERWEEADKLL 288

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEK 229
             M  +    D V  N++++++C Q+    RA + L ++ +    PD  +++ +++G  K
Sbjct: 289 TKMFSNDCAPDEVTFNAVITSLC-QKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCK 347

Query: 230 EGNVEEANKTFGEMV-ERFEWN--PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
           E  V+EA K   E++ E    N  P+ V  + T + +L +    D A+K +  M    C 
Sbjct: 348 ERRVDEAIKLLKELLAEMVSKNCIPDQV-TFNTIITSLCQKGLFDRAIKVVDEMSEHGCI 406

Query: 287 PTLKFFSNALD-ILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
           P +  ++  +D  L K   +  A+ L ++MV  G  L P+   Y ++   L   D+++  
Sbjct: 407 PDITTYNCIVDGFLCKSCKTEEALDLLNLMVSNG--LCPDTTTYKSLAFGLSREDEMERA 464

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
              F ++   G  PD + YN I   L K  R      FF  M+ N   P
Sbjct: 465 IGMFRRVQAMGLSPDKMLYNAILLGLCKKWRTDLAIDFFAYMVSNGCMP 513



 Score = 42.4 bits (98), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 69/166 (41%), Gaps = 39/166 (23%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSY-CGAGKYDEAVMSFDVM 173
           +N ++  L + G F++    V  M E G +  + T+  I D + C + K +EA+   ++M
Sbjct: 377 FNTIITSLCQKGLFDRAIKVVDEMSEHGCIPDITTYNCIVDGFLCKSCKTEEALDLLNLM 436

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI--------------------- 212
             +G+  D     SL   + R E++  RA+    RV+ +                     
Sbjct: 437 VSNGLCPDTTTYKSLAFGLSR-EDEMERAIGMFRRVQAMGLSPDKMLYNAILLGLCKKWR 495

Query: 213 ----VD-----------PDGDSFAILLEGWEKEGNVEEANKTFGEM 243
               +D           PD  ++ IL+EG   EG +EEA +  G +
Sbjct: 496 TDLAIDFFAYMVSNGCMPDESTYIILVEGIAYEGFLEEAKELLGNL 541



 Score = 41.6 bits (96), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 30/149 (20%), Positives = 57/149 (38%)

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           P+   YN +I  LC    V +    FD M+  G  P  +TY+++ +   K     +    
Sbjct: 158 PDTFTYNPLIRALCVRGCVLDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYKQAVVL 217

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
             EM     +P  +     I  +    +   A+++ N +   G  P   +   +L  L +
Sbjct: 218 LDEMRSKGCEPDIVTYNVLINAMCSQGDVGEALKVLNSLPSYGCKPDAVTYTPVLKSLCS 277

Query: 444 LGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
             R  +  +   +M +      EVT + +
Sbjct: 278 SERWEEADKLLTKMFSNDCAPDEVTFNAV 306


>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
 gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
          Length = 569

 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 163/359 (45%), Gaps = 19/359 (5%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAV--RVMKEDGVLSLPTFASIFDSYCGAGKYD 164
           RG   +   ++ +VD L K  R ++    +   V +      + T++++ D  C AG+  
Sbjct: 213 RGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLR 272

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD----PDGDSF 220
           +AV  F+ MS        +  NSL+   CR  +      E +  + K+VD    PD  ++
Sbjct: 273 DAVDIFEEMS---CAPTAITYNSLIGGYCRAGDMD----EAIRLLGKMVDDNCAPDVITY 325

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
             L+  + K G +++A + F +MV   + +P+ V+ + + +  L    ++++AL+ L  +
Sbjct: 326 TTLMSAFCKMGRLDDAYELFQQMVAN-KLSPD-VVTFTSLVDGLCGEGRMEDALELLEEI 383

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
               C PT+  ++  +D   K N    A +L       GF  +PN + YN ++   C   
Sbjct: 384 TRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGF--VPNTVTYNILVAGCCRAG 441

Query: 341 DVDNVFRFFDQMVFHGA-FPDSLT-YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
             D   ++ DQ+   G   P S+  Y +I + L ++ R  +  +F+ EMI+  + P    
Sbjct: 442 RTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAAT 501

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
            AT +  L  A +P+ A E+   +++ G  P   + + ++      G +      A E+
Sbjct: 502 FATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADELASEL 560



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 139/354 (39%), Gaps = 44/354 (12%)

Query: 139 MKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198
           M E G ++  T+ ++    C A   DEA+     M   G+    +  N ++  +CR   +
Sbjct: 72  MAELGAVNHTTYYNLIHPLCKARLLDEAMGLLLDMKSRGMNPGTLLHNVVIGGLCRA-GR 130

Query: 199 TSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV-------------- 244
              AL    ++     PD  ++  L+ G  K G + +A +   EMV              
Sbjct: 131 LRHALGVYRQMNDAHPPDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVV 190

Query: 245 -------ERFEWNPEHV------------LAYETFLITLIRGKQVDEALKFLRVMKGENC 285
                  +R +   E V            + Y   +  L + +++DEA+  L        
Sbjct: 191 VQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRG 250

Query: 286 F-PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
           F P +  +S  +D L K      AV +++ M     +  P  I YN++IG  C   D+D 
Sbjct: 251 FTPDIVTYSTVIDGLCKAGRLRDAVDIFEEM-----SCAPTAITYNSLIGGYCRAGDMDE 305

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
             R   +MV     PD +TY  +     K  R+ +  + F +M+ N+  P  +   + + 
Sbjct: 306 AIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVD 365

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
            L      E A+E+   I   G  P   + N ++ G       S+  R AEE++
Sbjct: 366 GLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCK----SNQVRKAEELV 415



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 73/392 (18%), Positives = 151/392 (38%), Gaps = 45/392 (11%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           RG        N+++  L + GR        R M +       T+  +      AG+  +A
Sbjct: 109 RGMNPGTLLHNVVIGGLCRAGRLRHALGVYRQMNDAHPPDFLTYTKLVHGLSKAGRLRDA 168

Query: 167 V-----------------MSFDVMSM------------------HGVEQDVVAVNSLLSA 191
           V                 ++  V S+                   G+  + +  ++L+  
Sbjct: 169 VQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDG 228

Query: 192 ICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
           +C+ E         L  V ++   PD  +++ +++G  K G + +A   F EM       
Sbjct: 229 LCKCERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEM----SCA 284

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P   + Y + +    R   +DEA++ L  M  +NC P +  ++  +    K+     A +
Sbjct: 285 PT-AITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYE 343

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
           L+  MV     L P+++ + +++  LC    +++     +++   G  P   TYN + + 
Sbjct: 344 LFQQMV--ANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDG 401

Query: 371 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI-LENGILP 429
             K+ +V + E+   +     + P  +     +     A   + A++  + +  E G  P
Sbjct: 402 YCKSNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCP 461

Query: 430 LEASANELLV-GLRNLGRLSDVRRFAEEMLNR 460
              +   +++  L   GR  D  +F EEM+ R
Sbjct: 462 TSVAMYAIILDALCRDGRTDDAVQFYEEMIQR 493



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 69/313 (22%), Positives = 132/313 (42%), Gaps = 10/313 (3%)

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK 229
            D +   G+  D V +N++L+ +C   + T+ A+   +++ ++   +  ++  L+    K
Sbjct: 34  LDEIRDRGLSPDPVELNTILAELCDARDTTT-AMALFDKMAELGAVNHTTYYNLIHPLCK 92

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
              ++EA     +M  R   NP  +L +   +  L R  ++  AL   R M   +  P  
Sbjct: 93  ARLLDEAMGLLLDMKSR-GMNPGTLL-HNVVIGGLCRAGRLRHALGVYRQMNDAH-PPDF 149

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
             ++  +  L K      AVQ+   MV      +P+      V+  LC  D VD+     
Sbjct: 150 LTYTKLVHGLSKAGRLRDAVQVLQEMVSA--RHVPDNTTLTVVVQSLCLGDRVDDARELV 207

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKRVHE-VEKFFHEMIKNEWQPTPLNCATAITMLLD 408
           ++M+  G   +++TY+ + + L K +R+ E V     E+ +  + P  +  +T I  L  
Sbjct: 208 EEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLCK 267

Query: 409 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 468
           A     A++I+    E    P   + N L+ G    G + +  R   +M++       +T
Sbjct: 268 AGRLRDAVDIFE---EMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVIT 324

Query: 469 MHKLKKAFYNESR 481
              L  AF    R
Sbjct: 325 YTTLMSAFCKMGR 337


>gi|356547370|ref|XP_003542086.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g65820-like [Glycine max]
          Length = 628

 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/403 (23%), Positives = 170/403 (42%), Gaps = 9/403 (2%)

Query: 62  HASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLM 119
           H+    +E AL  +G++  P L   VL    D+ + A  F+ WA +  G RL   A+  M
Sbjct: 77  HSRVPKLELALRESGVVVRPGLTERVLNRCGDAGNLAYRFYSWASKQSGHRLDHDAYKAM 136

Query: 120 VDVLGKNGRFEQMWNAVRVMKEDG--VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           + VL +  +F  +W  +  M+++   +++   F  +   +  A    +AV   D M  +G
Sbjct: 137 IKVLSRMRQFGAVWALIEEMRQENPHLITPQVFVILMRRFASARMVHKAVQVLDEMPNYG 196

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
            E D      LL A+ R+      A      ++    P    F  LL GW KEG + EA 
Sbjct: 197 CEPDEYVFGCLLDAL-RKNGSVKEAASLFEELRYRWKPSVKHFTSLLYGWCKEGKLMEAK 255

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297
               +M +     P+ ++ Y   L    +  ++ +A   L+ M+ + C P    ++  + 
Sbjct: 256 HVLVQMKDA-GIEPD-IVVYNNLLGGYAQADKMGDAYDLLKEMRRKGCEPNATSYTVLIQ 313

Query: 298 ILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGA 357
            L K      A +++  M   G     +L+ Y+ +I   C    +   +   D+M+  G 
Sbjct: 314 SLCKHERLEEATRVFVEMQRNG--CQADLVTYSTLISGFCKWGKIKRGYELLDEMIQQGH 371

Query: 358 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 417
           FP+ + Y  I     K + + E ++  +EM K    P      T I +     E +  + 
Sbjct: 372 FPNQVIYQHIMVAHEKKEELEECKELVNEMQKIGCAPDLSIYNTVIRLACKLGEVKEGVR 431

Query: 418 IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           +WN +  +G+ P   +   ++ G    G L +   + +EM+ R
Sbjct: 432 LWNEMESSGLSPSIDTFVIMINGFLEQGCLVEACEYFKEMVGR 474


>gi|302765176|ref|XP_002966009.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
 gi|300166823|gb|EFJ33429.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
          Length = 413

 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/349 (25%), Positives = 154/349 (44%), Gaps = 8/349 (2%)

Query: 83  LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED 142
           LV  + ++S  + + AV F    G G +      N ++    + G   Q    +  M   
Sbjct: 53  LVIFLCKMSRATDALAV-FQEMLGAGLQADVNVCNTLIHCTCRLGMLRQARRLLHHMTAH 111

Query: 143 G-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSR 201
             VL + T++ + D+   AG+  +A+  F  M   G   D V  N L+S + +Q  +   
Sbjct: 112 AFVLDVFTYSYLMDALGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQ-GKVDE 170

Query: 202 ALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF 260
           ALE L  + +K + PD  ++ I+++     G  E+A   FG M++R + +P+ V+ Y T 
Sbjct: 171 ALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFG-MMKRRKHSPD-VVTYNTL 228

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF 320
           L  L + ++ DEA      M+   C P L  F   +D L K      A++    +V +G 
Sbjct: 229 LNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGH 288

Query: 321 NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEV 380
             +PN  +YNA+I   C +  VD  +  F  M+    FPDS+TY ++     +       
Sbjct: 289 --VPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMA 346

Query: 381 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
            +   EM++    P        I  L  A + E A  ++  ++  G  P
Sbjct: 347 MELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYTLFKEMIAKGFNP 395



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 119/264 (45%), Gaps = 7/264 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N+++  LGK G+ ++    +  M   G++    T+  + D     G+Y++A   F +M 
Sbjct: 155 YNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMK 214

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNV 233
                 DVV  N+LL+ + ++  +T  A +  + ++     PD  +F  L++   K G +
Sbjct: 215 RRKHSPDVVTYNTLLNGL-KKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRM 273

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           E+A +    +V+       ++  Y   +    R  QVD+  +  + M   +CFP    ++
Sbjct: 274 EDALEQSARLVKMGHVPNSYI--YNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYT 331

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +    +   ++ A++L   MV  G    P L  YN +I  L     V++ +  F +M+
Sbjct: 332 ILVLGFSRRGHTSMAMELLQEMVREGHT--PALATYNVLIRSLSMAGQVEDAYTLFKEMI 389

Query: 354 FHGAFPDSLTYNMIFECLIKNKRV 377
             G  PD  TY+ +      NK V
Sbjct: 390 AKGFNPDMQTYSALPNLSTPNKSV 413



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 126/311 (40%), Gaps = 7/311 (2%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHG-VEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           + ++   YC AG  D A+  F  +   G  + + V+ ++L+  +C+    T     F   
Sbjct: 14  YNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALAVFQEM 73

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRG 267
           +   +  D +    L+    + G + +A +    M    F  +   V  Y   +  L + 
Sbjct: 74  LGAGLQADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHAFVLD---VFTYSYLMDALGKA 130

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
            +  +AL+    M+   C P    ++  +  L K      A++L + M   G  +MP+  
Sbjct: 131 GRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKG--IMPDCR 188

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            YN VI +L +    +  + FF  M      PD +TYN +   L K +R  E    F EM
Sbjct: 189 TYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEM 248

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
             N+  P      T I  L  A   E A+E    +++ G +P     N L+ G    G++
Sbjct: 249 QANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHVPNSYIYNALISGFCRSGQV 308

Query: 448 SDVRRFAEEML 458
                  ++M+
Sbjct: 309 DKGYELFQDMI 319



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 117/275 (42%), Gaps = 13/275 (4%)

Query: 181 DVVAVNSLLSAICRQENQTSRALEFLNRVKK--IVDPDGDSFAILLEGWEKEGNVEEANK 238
           DVVA N+L++  C+      RAL+   R+K+     P+  SF  L+    K     +A  
Sbjct: 10  DVVAYNTLIAGYCK-AGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALA 68

Query: 239 TFGEMVE---RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
            F EM+    + + N  + L + T  + ++R     +A + L  M        +  +S  
Sbjct: 69  VFQEMLGAGLQADVNVCNTLIHCTCRLGMLR-----QARRLLHHMTAHAFVLDVFTYSYL 123

Query: 296 LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
           +D L K   +  A++++  M   G   MP+ ++YN +I  L     VD      + M   
Sbjct: 124 MDALGKAGRAAKALEVFSNMQKAG--CMPDTVVYNVLISCLGKQGKVDEALELLEDMNRK 181

Query: 356 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 415
           G  PD  TYN++ + L    R  +   FF  M + +  P  +   T +  L      + A
Sbjct: 182 GIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEA 241

Query: 416 IEIWNYILENGILPLEASANELLVGLRNLGRLSDV 450
            ++++ +  N  +P   +   L+  L   GR+ D 
Sbjct: 242 CDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDA 276



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 107/254 (42%), Gaps = 10/254 (3%)

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-NCFPTLKFFSNALDILVK 301
           M E  +  P+ V+AY T +    +    D AL   R +K E +C P    F   +  L K
Sbjct: 1   MRETCDCAPD-VVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCK 59

Query: 302 LNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS 361
           ++ +T A+ ++  M+G G  L  ++ + N +I   C    +    R    M  H    D 
Sbjct: 60  MSRATDALAVFQEMLGAG--LQADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHAFVLDV 117

Query: 362 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 421
            TY+ + + L K  R  +  + F  M K    P  +     I+ L    + + A+E+   
Sbjct: 118 FTYSYLMDALGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLED 177

Query: 422 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR----ILIYEVTMHKLKKAFY 477
           +   GI+P   + N ++  L + GR      F   M  R+    ++ Y   ++ LKK   
Sbjct: 178 MNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKK--L 235

Query: 478 NESRSMRDIFDSLE 491
             +    D+FD ++
Sbjct: 236 RRTDEACDLFDEMQ 249


>gi|222641466|gb|EEE69598.1| hypothetical protein OsJ_29150 [Oryza sativa Japonica Group]
          Length = 579

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 109/437 (24%), Positives = 180/437 (41%), Gaps = 18/437 (4%)

Query: 44  LDAPYISSSARIICEILAHASSDDIESALACTGIIP--TPDLVHEVLQLSYDSPSSAVDF 101
           +DA  + S  R++ +        D+ +AL   G  P   P     VL+     P  ++ F
Sbjct: 53  VDARLVGSLCRVLSDF--RGRGQDLPAAL--RGFAPGFQPRDAAAVLRRCRHLPLPSLRF 108

Query: 102 FRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED---GVLSLPTFASIFDSYC 158
           F +AG     S +  +L+V  L  +    +++  +R +  D     LS   F  +F +Y 
Sbjct: 109 FLFAGELPGFSHHPDSLLV--LANSLAGARLFPLLRSLLSDLPPSALSRGLFPLLFRAYS 166

Query: 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD 218
            A   ++A+ +F  M+  G    +   +SLL A+ R          F        D    
Sbjct: 167 RARLPEDAIRAFSSMAGFGFPPTIADFHSLLFALSRN-GLVEYGERFFRESTAQFDVSAK 225

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++ IL+ GW      E A   F EMV+R      HV  Y   +  L RG  +  A + L 
Sbjct: 226 AYTILISGWAVVKKPENARSLFDEMVKRGVELDVHV--YNALIDALCRGGDITSAQEQLS 283

Query: 279 VM-KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337
            M K     P    +   L       D   A+++ D M      L PN+  YNAVI LLC
Sbjct: 284 NMQKSHGLVPNAATYGPFLHAACASKDVRAALRVLDRMHT--HALTPNVFTYNAVIRLLC 341

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
           +  +++  +   D++   G  PD  +YN +     K K V++  +    M K    P   
Sbjct: 342 DLGEINEAYNILDEITTQGEKPDVWSYNTLLNAHCKLKEVNKALRLISRMDKELCPPDRH 401

Query: 398 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN-LGRLSDVRRFAEE 456
           +    + ML+     + AIE+W+ + + G  P  A+   ++ GL +  GR  D   +   
Sbjct: 402 SYNMLLKMLISVGRFDTAIEVWDGMEKRGFHPGAATYAVMIHGLASKKGRAEDACSYFVR 461

Query: 457 MLNRRILIYEVTMHKLK 473
           M++  I  Y+ T   L+
Sbjct: 462 MVDEGIPPYQATCEVLR 478


>gi|125540047|gb|EAY86442.1| hypothetical protein OsI_07823 [Oryza sativa Indica Group]
          Length = 703

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 99/366 (27%), Positives = 167/366 (45%), Gaps = 18/366 (4%)

Query: 98  AVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDS 156
           AV+ F   G   +   + +  +V  L K GR E+    +R MKE G   S   +A++ D 
Sbjct: 100 AVELF---GEMDQPDMHMYAALVKGLCKAGRGEEGLLMLRRMKELGWRPSTRAYAAVVDF 156

Query: 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDP 215
            C   K  EA      M   G+   VV   ++++A C+ E + S AL  L  +K +   P
Sbjct: 157 RCWERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCK-EGRMSDALRVLELMKLRGCKP 215

Query: 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD---- 271
           +  ++  L++G+  EG V +A     +M      NP+ V    T+ + LIRG+ +D    
Sbjct: 216 NVWTYNALVQGFCNEGKVHKAMALLNKM-RVCGVNPDAV----TYNL-LIRGQCIDGHIE 269

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA 331
            A + LR+M+G+        ++  ++ L K   +  A  L+D +   G    PN + +N+
Sbjct: 270 SAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIK--PNAVTFNS 327

Query: 332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
           +I  LC +  VD  ++F ++MV  G  PD+ TY+   E L K K   E   F  EM++ +
Sbjct: 328 LINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKD 387

Query: 392 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 451
            +P+ +N    I  LL      +    W  ++ +G  P   +    +      GRL++  
Sbjct: 388 VKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAE 447

Query: 452 RFAEEM 457
               EM
Sbjct: 448 NVLMEM 453



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 129/311 (41%), Gaps = 8/311 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF S+   YC   + D A   FD M + G  QDVV+  +L+   C    +T R  E +  
Sbjct: 48  TFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYAALIEGFC----ETGRIDEAVEL 103

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
             ++  PD   +A L++G  K G  EE       M E   W P    AY   +      +
Sbjct: 104 FGEMDQPDMHMYAALVKGLCKAGRGEEGLLMLRRMKE-LGWRPS-TRAYAAVVDFRCWER 161

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           +  EA + L+ M  +   P +   +  ++   K    + A+++ ++M   G    PN+  
Sbjct: 162 KAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCK--PNVWT 219

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           YNA++   CN   V       ++M   G  PD++TYN++      +  +    +    M 
Sbjct: 220 YNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLME 279

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
            +            I  L      + A  +++ +   GI P   + N L+ GL   G++ 
Sbjct: 280 GDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKVD 339

Query: 449 DVRRFAEEMLN 459
              +F E+M++
Sbjct: 340 IAWKFLEKMVS 350



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/325 (22%), Positives = 128/325 (39%), Gaps = 10/325 (3%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ ++  S C       A+    +M   G   D    NSL+   CR  NQ   A +  ++
Sbjct: 13  TYNAVIRSLCRRADLASALRYLSLMVRSGWRPDAYTFNSLIVGYCRT-NQVDVARDLFDK 71

Query: 209 VK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           +  +    D  S+A L+EG+ + G ++EA + FGEM      +   +  Y   +  L + 
Sbjct: 72  MPLRGFAQDVVSYAALIEGFCETGRIDEAVELFGEM------DQPDMHMYAALVKGLCKA 125

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
            + +E L  LR MK     P+ + ++  +D       +  A ++   M   G  L P ++
Sbjct: 126 GRGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKG--LAPCVV 183

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
              AVI   C    + +  R  + M   G  P+  TYN + +      +VH+     ++M
Sbjct: 184 TCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKM 243

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
                 P  +     I         E A  +   +  +G++  + + N L+  L   GR 
Sbjct: 244 RVCGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRT 303

Query: 448 SDVRRFAEEMLNRRILIYEVTMHKL 472
                  + +  R I    VT + L
Sbjct: 304 DQACSLFDSLETRGIKPNAVTFNSL 328



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 79/353 (22%), Positives = 144/353 (40%), Gaps = 20/353 (5%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
           G G     Y +N +++ L K+GR +Q  +    ++  G+  +  TF S+ +  C +GK D
Sbjct: 280 GDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKVD 339

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAIL 223
            A    + M   G   D    +S +  +C+ +  +   L F+   ++K V P   ++ I+
Sbjct: 340 IAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKG-SQEGLSFIGEMLQKDVKPSTVNYTIV 398

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           +    KE N     +T+GEMV     NP+ V+ Y T +       +++EA   L  M   
Sbjct: 399 IHKLLKERNYGLVARTWGEMVSS-GCNPD-VVTYTTSMRAYCIEGRLNEAENVLMEMSKN 456

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG--------FNLMPNLIMYNAVIGL 335
                   ++  +D    +  + HAV +   M  +         F L+ +L+    V  +
Sbjct: 457 GVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDV 516

Query: 336 L-------CNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           L           ++ +VF  FD M  +   P+S TY+ I E   ++ R  E       M 
Sbjct: 517 LPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMK 576

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 441
           ++            +T    +     A  +   ++++G +P   S   LL GL
Sbjct: 577 EDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPHLMSYQHLLSGL 629



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 87/225 (38%), Gaps = 6/225 (2%)

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
           Y   + +L R   +  AL++L +M      P    F++ +    + N    A  L+D M 
Sbjct: 14  YNAVIRSLCRRADLASALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMP 73

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
             GF    +++ Y A+I   C    +D     F +M      PD   Y  + + L K  R
Sbjct: 74  LRGF--AQDVVSYAALIEGFCETGRIDEAVELFGEM----DQPDMHMYAALVKGLCKAGR 127

Query: 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 436
             E       M +  W+P+    A  +       + + A E+   + E G+ P   +   
Sbjct: 128 GEEGLLMLRRMKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTA 187

Query: 437 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
           ++      GR+SD  R  E M  R       T + L + F NE +
Sbjct: 188 VINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGK 232



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 74/141 (52%), Gaps = 6/141 (4%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           ++ +++   ++GR E+  + V +MKED + L+   + ++   +C + +Y +A +    M 
Sbjct: 552 YSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMI 611

Query: 175 MHGVEQDVVAVNSLLSA-ICRQENQTSRALE-FLNRVKKIVDPDGDSFAILLEGWEKEGN 232
            HG    +++   LLS  IC  E QT +A E F+N   K   PD   + ++++G  K+G+
Sbjct: 612 QHGFIPHLMSYQHLLSGLIC--EGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGH 669

Query: 233 VEEANKTFGEMVERFEWNPEH 253
             + ++    M+ER    P H
Sbjct: 670 -SDISREMIIMLERMNCRPSH 689



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 53/271 (19%), Positives = 103/271 (38%), Gaps = 24/271 (8%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ +   +YC  G+ +EA      MS +GV  D +A N+L+        QT  A+  L +
Sbjct: 429 TYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHA-SIGQTDHAVSILKQ 487

Query: 209 VKKIVD-PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           +  +   P+  ++ ILL    +   VE+               P  V           + 
Sbjct: 488 MTSVASVPNQFTYFILLRHLVRMRLVEDV----------LPLTPAGVW----------KA 527

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
            ++ +      VMK     P    +S+ L+   +   +  A  L  +M     +L  N  
Sbjct: 528 IELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISL--NED 585

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
           +Y A++   C +    + +     M+ HG  P  ++Y  +   LI   +  + ++ F   
Sbjct: 586 IYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPHLMSYQHLLSGLICEGQTDKAKEIFMNS 645

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEI 418
              ++ P  +     I  L+     +I+ E+
Sbjct: 646 RWKDYSPDEIVWKVIIDGLIKKGHSDISREM 676


>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
          Length = 818

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 143/307 (46%), Gaps = 26/307 (8%)

Query: 161 GKYDEAVMSFDVMSMHGVEQ--DVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD 218
           G+ DEA++ FD M+  G      VV  N L+  +C  + + S A     RV   + P   
Sbjct: 164 GEIDEALVLFDSMASGGGRNCPPVVPCNILIKRLC-SDGRVSDA----ERVFAALGPSAT 218

Query: 219 --SFAILLEGWEKEGNVEEANKTFGEMV---ERFEWNPEHVLAYETFLITLIRGKQVDEA 273
             ++  ++ G+ + G +E+A +    M    + F +NP             +RG+ + +A
Sbjct: 219 VVTYNTMVNGYCRAGRIEDARRLINGMPFPPDTFTFNP-------LIRALCVRGR-IPDA 270

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
           L     M    C P++  +S  LD   K +    A+ L D M   G    P+++ YN +I
Sbjct: 271 LAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCE--PDIVTYNVLI 328

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
             +CN  DVD        +  HG  PD++TY  + + L  ++R  EVE+   EM  N   
Sbjct: 329 NAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCA 388

Query: 394 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 453
           P  +   T +T L      + AIE+ +++ E+G +    + + +L GL ++GR+ D    
Sbjct: 389 PDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDD---- 444

Query: 454 AEEMLNR 460
           A E+L+R
Sbjct: 445 AVELLSR 451



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 78/364 (21%), Positives = 160/364 (43%), Gaps = 9/364 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N++++ +   G  ++  N +  +   G      T+  +  S CG+ ++ E       M+
Sbjct: 324 YNVLINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMT 383

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNV 233
            +    D V  N++++++C Q+    RA+E ++ + +     D  +++ +L+G    G V
Sbjct: 384 SNNCAPDEVTFNTIVTSLC-QQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRV 442

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           ++A +    + + +   P+  +AY T L  L   +Q + A + +  M   +C P    F+
Sbjct: 443 DDAVELLSRL-KSYGCKPD-TIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFN 500

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +  L +      A+++ + M   G +  P+++ YN +I  LCN   +D+       + 
Sbjct: 501 TVVASLCQKGLVDRAIRVVEQMSENGCS--PDIVTYNCIIDGLCNESCIDDAMELLSDLQ 558

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G  PD +T+N + + L    R  + E+    M+++   P  L   T IT L       
Sbjct: 559 SCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLT 618

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR--ILIYEVTMHK 471
            AIE    + ENG +P  ++ + ++  L   G+          M N    ++ Y   +  
Sbjct: 619 QAIETLKIMAENGCVPNSSTYSIVVDALLKAGKAQAALELLSGMTNGTPDLITYNTVISN 678

Query: 472 LKKA 475
           L KA
Sbjct: 679 LTKA 682



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 82/361 (22%), Positives = 145/361 (40%), Gaps = 7/361 (1%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +N ++  L   GR          M   G   S+ T++ + D+ C    Y +A+   D 
Sbjct: 252 FTFNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDE 311

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL-NRVKKIVDPDGDSFAILLEGWEKEG 231
           M   G E D+V  N L++A+C  E     AL  L N       PD  ++  +L+      
Sbjct: 312 MRAKGCEPDIVTYNVLINAMC-NEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSE 370

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
             +E  +   EM       P+ V  + T + +L +   VD A++ +  M    C   +  
Sbjct: 371 RWKEVEELLAEMTSN-NCAPDEV-TFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVT 428

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           +S+ LD L  +     AV+L   +   G    P+ I Y  V+  LC+ +  +       +
Sbjct: 429 YSSILDGLCDVGRVDDAVELLSRLKSYGCK--PDTIAYTTVLKGLCSTEQWERAEELMAE 486

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M+     PD +T+N +   L +   V    +   +M +N   P  +     I  L +   
Sbjct: 487 MLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESC 546

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK 471
            + A+E+ + +   G  P   + N LL GL  + R  D  +    M+       E+T + 
Sbjct: 547 IDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNT 606

Query: 472 L 472
           +
Sbjct: 607 V 607



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 85/378 (22%), Positives = 148/378 (39%), Gaps = 12/378 (3%)

Query: 105 AGRGQRLSPYA-WNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGK 162
           +G G+   P    N+++  L  +GR     +A RV    G   ++ T+ ++ + YC AG+
Sbjct: 178 SGGGRNCPPVVPCNILIKRLCSDGRVS---DAERVFAALGPSATVVTYNTMVNGYCRAGR 234

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
            ++A    + M       D    N L+ A+C +         F + + +   P   +++I
Sbjct: 235 IEDARRLINGMPF---PPDTFTFNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYSI 291

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           LL+   KE    +A     EM  R +     ++ Y   +  +     VDEAL  L  +  
Sbjct: 292 LLDATCKESGYRQAMALLDEM--RAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPS 349

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
             C P    ++  L  L          +L   M     N  P+ + +N ++  LC    V
Sbjct: 350 HGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMT--SNNCAPDEVTFNTIVTSLCQQGLV 407

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
           D      D M  HG   D +TY+ I + L    RV +  +    +     +P  +   T 
Sbjct: 408 DRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTV 467

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
           +  L   ++ E A E+   +L +   P E + N ++  L   G +    R  E+M     
Sbjct: 468 LKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGC 527

Query: 463 LIYEVTMHKLKKAFYNES 480
               VT + +     NES
Sbjct: 528 SPDIVTYNCIIDGLCNES 545



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 77/360 (21%), Positives = 144/360 (40%), Gaps = 40/360 (11%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N +V  L + G  ++    V  M E G ++ + T++SI D  C  G+ D+AV     + 
Sbjct: 394 FNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLK 453

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNV 233
            +G + D +A  ++L  +C  E Q  RA E +   +     PD  +F  ++    ++G V
Sbjct: 454 SYGCKPDTIAYTTVLKGLCSTE-QWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLV 512

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           + A +   +M E    +P+ ++ Y   +  L     +D+A++ L  ++   C P +  F+
Sbjct: 513 DRAIRVVEQMSEN-GCSPD-IVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFN 570

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             L  L  ++    A QL   M  +  N  P+ + +N VI  LC    +         M 
Sbjct: 571 TLLKGLCGVDRWEDAEQLMANM--MRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMA 628

Query: 354 FHGAFPDS---------------------------------LTYNMIFECLIKNKRVHEV 380
            +G  P+S                                 +TYN +   L K  ++ E 
Sbjct: 629 ENGCVPNSSTYSIVVDALLKAGKAQAALELLSGMTNGTPDLITYNTVISNLTKAGKMEEA 688

Query: 381 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 440
                 M+ N   P      +    +   D  + A+ +   + + G+ P     N++L+G
Sbjct: 689 LDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLG 748



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 114/282 (40%), Gaps = 43/282 (15%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF ++  S C  G  D A+   + MS +G   D+V  N ++  +C  E+    A+E L+ 
Sbjct: 498 TFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLC-NESCIDDAMELLSD 556

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           ++     PD  +F  LL+G       E+A +    M+ R    P+  L + T + +L + 
Sbjct: 557 LQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMM-RSNCPPDE-LTFNTVITSLCQK 614

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
             + +A++ L++M    C P    +S  +D L+K   +  A++L   M     N  P+LI
Sbjct: 615 GLLTQAIETLKIMAENGCVPNSSTYSIVVDALLKAGKAQAALELLSGMT----NGTPDLI 670

Query: 328 MYNAVI----------------------GL-------------LCNNDDVDNVFRFFDQM 352
            YN VI                      GL             +C  D  D   R   ++
Sbjct: 671 TYNTVISNLTKAGKMEEALDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAVRMLRRV 730

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
              G  PD+  YN +     +++R       F  M+ +   P
Sbjct: 731 QDTGLSPDTTFYNDVLLGFCRDRRTDLAIDCFAHMVSSGCMP 772



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 52/240 (21%), Positives = 105/240 (43%), Gaps = 8/240 (3%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN- 207
           TF ++    CG  ++++A      M       D +  N++++++C Q+   ++A+E L  
Sbjct: 568 TFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLC-QKGLLTQAIETLKI 626

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
             +    P+  +++I+++   K G  + A +    M       P+ ++ Y T +  L + 
Sbjct: 627 MAENGCVPNSSTYSIVVDALLKAGKAQAALELLSGMTN---GTPD-LITYNTVISNLTKA 682

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
            +++EAL  LRVM      P    + +    + + + +  AV++   +   G  L P+  
Sbjct: 683 GKMEEALDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTG--LSPDTT 740

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            YN V+   C +   D     F  MV  G  PD  TY ++ E L     + E ++    +
Sbjct: 741 FYNDVLLGFCRDRRTDLAIDCFAHMVSSGCMPDESTYVILLEALAYGGLLDEAKRLLASL 800



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 5/163 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
           ++++VD L K G+ +     +  M  +G   L T+ ++  +   AGK +EA+    VM  
Sbjct: 639 YSIVVDALLKAGKAQAALELLSGMT-NGTPDLITYNTVISNLTKAGKMEEALDLLRVMVS 697

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVE 234
           +G+  D     SL   +CR E+ T RA+  L RV+   + PD   +  +L G+ ++   +
Sbjct: 698 NGLCPDTTTYRSLAYGVCR-EDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLGFCRDRRTD 756

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            A   F  MV       E    Y   L  L  G  +DEA + L
Sbjct: 757 LAIDCFAHMVSSGCMPDEST--YVILLEALAYGGLLDEAKRLL 797



 Score = 47.0 bits (110), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 3/131 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++  L K G+ E+  + +RVM  +G+     T+ S+    C     D AV     + 
Sbjct: 672 YNTVISNLTKAGKMEEALDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQ 731

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
             G+  D    N +L   CR + +T  A++ F + V     PD  ++ ILLE     G +
Sbjct: 732 DTGLSPDTTFYNDVLLGFCR-DRRTDLAIDCFAHMVSSGCMPDESTYVILLEALAYGGLL 790

Query: 234 EEANKTFGEMV 244
           +EA +    + 
Sbjct: 791 DEAKRLLASLC 801


>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/409 (21%), Positives = 175/409 (42%), Gaps = 45/409 (11%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKY 163
           R +  SP    +N+M+  L   G+ +     + +++ ++   ++ T+  + ++    G  
Sbjct: 181 RSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQLLSDNCQPTVITYTILIEATMLEGGV 240

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAI 222
           DEA+   D M   G++ D+   N+++  +C+ E    RA E +  ++ K  +PD  S+ I
Sbjct: 241 DEALKLLDEMLSRGLKPDMFTYNTIIRGMCK-EGMVDRAFEMIRNLELKGCEPDVISYNI 299

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           LL     +G  EE  K   +M    + +P +V+ Y   + TL R  +++EA+  L++MK 
Sbjct: 300 LLRALLNQGKWEEGEKLMTKMFSE-KCDP-NVVTYSILITTLCRDGKIEEAMNLLKLMKE 357

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
           +   P    +   +    +      A++  + M+  G   +P+++ YN V+  LC N   
Sbjct: 358 KGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDG--CLPDIVNYNTVLATLCKNGKA 415

Query: 343 DNVFRFFD-----------------------------------QMVFHGAFPDSLTYNMI 367
           D     F                                    +MV +G  PD +TYN +
Sbjct: 416 DQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMVSNGIDPDEITYNSM 475

Query: 368 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 427
             CL +   V +  +   +M   E+ P+ +     +     A   E AI++ + ++ NG 
Sbjct: 476 ISCLCREGMVDKAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAIDVLDSMVGNGC 535

Query: 428 LPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
            P E +   L+ G+   G  ++    A +++ R   I E +  +L + F
Sbjct: 536 RPNETTYTVLIEGIGFAGYRAEAMELANDLV-RINAISEYSFKRLHRTF 583



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 138/307 (44%), Gaps = 5/307 (1%)

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI 212
           IF   C +G Y E++   + M   G   DV+    L+       N   +A+  +  ++K 
Sbjct: 91  IFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRN-VPKAVRVMEILEKF 149

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
             PD  ++  L+ G+ K   +++A +    M  + +++P+ V  Y   + +L    ++D 
Sbjct: 150 GQPDVFAYNALINGFCKMNRIDDATRVLDRMRSK-DFSPDTV-TYNIMIGSLCSRGKLDL 207

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAV 332
           ALK L  +  +NC PT+  ++  ++  +       A++L D M+  G  L P++  YN +
Sbjct: 208 ALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRG--LKPDMFTYNTI 265

Query: 333 IGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 392
           I  +C    VD  F     +   G  PD ++YN++   L+   +  E EK   +M   + 
Sbjct: 266 IRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKC 325

Query: 393 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 452
            P  +  +  IT L    + E A+ +   + E G+ P   S + L+      GRL     
Sbjct: 326 DPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIE 385

Query: 453 FAEEMLN 459
           F E M++
Sbjct: 386 FLETMIS 392



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 79/350 (22%), Positives = 150/350 (42%), Gaps = 9/350 (2%)

Query: 135 AVRVMK---EDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
           AVRVM+   + G   +  + ++ + +C   + D+A    D M       D V  N ++ +
Sbjct: 139 AVRVMEILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGS 198

Query: 192 ICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
           +C +  +   AL+ L++ +     P   ++ IL+E    EG V+EA K   EM+ R    
Sbjct: 199 LCSR-GKLDLALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSR-GLK 256

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P+ +  Y T +  + +   VD A + +R ++ + C P +  ++  L  L+         +
Sbjct: 257 PD-MFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEK 315

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
           L   M     +  PN++ Y+ +I  LC +  ++        M   G  PD+ +Y+ +   
Sbjct: 316 LMTKMFSEKCD--PNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAA 373

Query: 371 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 430
             +  R+    +F   MI +   P  +N  T +  L    + + A+EI+  + E G  P 
Sbjct: 374 FCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPN 433

Query: 431 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 480
            +S N +   L + G          EM++  I   E+T + +      E 
Sbjct: 434 SSSYNTMFSALWSSGDKIRALHMILEMVSNGIDPDEITYNSMISCLCREG 483



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 105/239 (43%), Gaps = 17/239 (7%)

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG----KQVDEALKFLRVMK--G 282
           + GN  E+      MV R  +NP+ +L  +     LI+G    + V +A++ + +++  G
Sbjct: 97  RSGNYIESLHLLETMV-RKGYNPDVILCTK-----LIKGFFTLRNVPKAVRVMEILEKFG 150

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
           +   P +  ++  ++   K+N    A ++ D M    F+  P+ + YN +IG LC+   +
Sbjct: 151 Q---PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFS--PDTVTYNIMIGSLCSRGKL 205

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
           D   +  DQ++     P  +TY ++ E  +    V E  K   EM+    +P      T 
Sbjct: 206 DLALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTI 265

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461
           I  +      + A E+   +   G  P   S N LL  L N G+  +  +   +M + +
Sbjct: 266 IRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEK 324


>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
 gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
          Length = 561

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 162/353 (45%), Gaps = 14/353 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +  +++ L K+G+ ++    + +M E G   ++ T++ + +  C AG+ D+       M+
Sbjct: 139 YTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMT 198

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEKEGNV 233
             G + DV+  N+LL+ +C+   +   ALE +   ++    P   ++  L+E + +   V
Sbjct: 199 RRGFQPDVIMYNTLLNGLCKSR-RLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQV 257

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           + A +    M ER    P  V+ Y T +  L R  ++D+A   L+ M    C P +  +S
Sbjct: 258 DRAFRLIQVMSER--GCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYS 315

Query: 294 NALDILVK--LNDS----THAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFR 347
             +D L K    D+      A ++ ++M   G    PN   Y  VI  LC          
Sbjct: 316 TIIDGLCKDWRVDADWKLEAACEILEMMKQTGCP--PNAGTYAVVIEGLCRARKSQQALA 373

Query: 348 FFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 407
              +M+     PD  +++M+   L K+  +    K F  M + E +P P+  A  I  L 
Sbjct: 374 LLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLS 433

Query: 408 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
              E + A+ ++  ++E+   P  A+ N +L GL  +GR+ +  R  E M+++
Sbjct: 434 KGGEVDKAVRVFELMVES-FRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHK 485



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 132/293 (45%), Gaps = 11/293 (3%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           A NL+V   G++G+  Q++   R +  +      T+ S+    C AGK D+A    D M 
Sbjct: 4   ALNLLVRA-GQHGQAVQLFREERCVPNE-----FTYGSLIHGLCKAGKLDQAYELLDEMR 57

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNV 233
             G+   V   N ++  +C+   +   AL +   V      PD  +F IL++   K G V
Sbjct: 58  DRGIPPGVAVHNGVIRGLCKA-GRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRV 116

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           EEA + F  M    +  P +V+ Y T +  L +  ++D A++ L +M    C P +  +S
Sbjct: 117 EEAFQIFESMHTSSQCLP-NVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYS 175

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             ++ L K   +     L   M   GF   P++IMYN ++  LC +  +D        M+
Sbjct: 176 VLVEGLCKAGRTDKGFTLLQEMTRRGFQ--PDVIMYNTLLNGLCKSRRLDEALELVQLMI 233

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406
             G +P  +TYN + E   ++K+V    +    M +    P  +N  T I  L
Sbjct: 234 RSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGL 286



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 129/317 (40%), Gaps = 39/317 (12%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG +     +N +++ L K+ R ++    V++M   G   ++ T+ S+ + +C + + D 
Sbjct: 200 RGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDR 259

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A     VMS  G   DV+  N++++ +CR              V     PD  +++ +++
Sbjct: 260 AFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIID 319

Query: 226 GWEKEGNVE-----EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
           G  K+  V+     EA     EM+++    P +   Y   +  L R ++  +AL  LR M
Sbjct: 320 GLCKDWRVDADWKLEAACEILEMMKQ-TGCPPNAGTYAVVIEGLCRARKSQQALALLRRM 378

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV----------------GIG----- 319
                 P L  FS  +  L K +D   A +++ +M                 G+      
Sbjct: 379 IDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEV 438

Query: 320 ------FNLM-----PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIF 368
                 F LM     P +  YN+V+  LC    ++   R  + M+    FPD  +Y  + 
Sbjct: 439 DKAVRVFELMVESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALI 498

Query: 369 ECLIKNKRVHEVEKFFH 385
             L +   V E  + F 
Sbjct: 499 RGLCRVSCVEEAYELFQ 515



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/286 (23%), Positives = 130/286 (45%), Gaps = 14/286 (4%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSYCGAGKYDE------AVM 168
           +N ++  L ++ R +     ++ M     V  + T+++I D  C   + D       A  
Sbjct: 279 YNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACE 338

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGW 227
             ++M   G   +      ++  +CR   ++ +AL  L R +   V PD  SF++++   
Sbjct: 339 ILEMMKQTGCPPNAGTYAVVIEGLCRAR-KSQQALALLRRMIDSEVVPDLSSFSMVIGSL 397

Query: 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
            K  +++ A K FG M ER E  P  V AY   +  L +G +VD+A++   +M  E+  P
Sbjct: 398 CKSHDLDAAYKIFGMMSER-ECKPNPV-AYAALIDGLSKGGEVDKAVRVFELMV-ESFRP 454

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFR 347
            +  +++ LD L  +     AV++ + M  I     P+   Y A+I  LC    V+  + 
Sbjct: 455 GVATYNSVLDGLCGVGRIEEAVRMVEGM--IHKECFPDGASYGALIRGLCRVSCVEEAYE 512

Query: 348 FFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
            F  +   G   +   YN++   L K KR+ +     +++I+  ++
Sbjct: 513 LFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGVANKLIEAGYK 558



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 88/221 (39%), Gaps = 45/221 (20%)

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM-- 352
           AL++LV+      AVQL+          +PN   Y ++I  LC    +D  +   D+M  
Sbjct: 4   ALNLLVRAGQHGQAVQLFREE-----RCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRD 58

Query: 353 --------VFHGAF-------------------------PDSLTYNMIFECLIKNKRVHE 379
                   V +G                           PD +T+N++ + L+K+ RV E
Sbjct: 59  RGIPPGVAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEE 118

Query: 380 VEKFFHEM-IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 438
             + F  M   ++  P  +   T I  L    + + AIE+ + + E G  P   + + L+
Sbjct: 119 AFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLV 178

Query: 439 VGLRNLGRLSDVRRFAEEMLNRR----ILIYEVTMHKLKKA 475
            GL   GR        +EM  R     +++Y   ++ L K+
Sbjct: 179 EGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKS 219



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 48/104 (46%)

Query: 91  SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTF 150
           S+D  ++   F   + R  + +P A+  ++D L K G  ++      +M E     + T+
Sbjct: 400 SHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESFRPGVATY 459

Query: 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194
            S+ D  CG G+ +EAV   + M       D  +  +L+  +CR
Sbjct: 460 NSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCR 503


>gi|15237375|ref|NP_199422.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171880|sp|Q9FNL2.1|PP418_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g46100
 gi|9757730|dbj|BAB08255.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|332007954|gb|AED95337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 472

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 134/287 (46%), Gaps = 9/287 (3%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRV---MKE-DGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           ++++ +    GR  + ++++RV   MK+ D   S   + ++        + + A   +  
Sbjct: 87  DILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKN 146

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAILLEGWEKEG 231
           M   G+   V ++N L+ A+CR +      L+ FL   K+  DPD  ++  L+ G  + G
Sbjct: 147 MREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFG 206

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            ++EA K F EMVE+ +  P  V+ Y + +  L   K VDEA+++L  MK +   P +  
Sbjct: 207 RIDEAKKLFTEMVEK-DCAPT-VVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFT 264

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           +S+ +D L K   S  A++L+++M+  G    PN++ Y  +I  LC    +       D+
Sbjct: 265 YSSLMDGLCKDGRSLQAMELFEMMMARGCR--PNMVTYTTLITGLCKEQKIQEAVELLDR 322

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
           M   G  PD+  Y  +        +  E   F  EMI     P  L 
Sbjct: 323 MNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGITPNRLT 369



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 102/235 (43%), Gaps = 7/235 (2%)

Query: 252 EHVLAYETFLITLIRG-KQVDEALKFLRV---MKGENCFPTLKFFSNALDILVKLNDSTH 307
           E+ +  E  L+++ RG  +V      LRV   MK  +C P+ K +   L ILV+ N    
Sbjct: 80  ENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAYVTVLAILVEENQLNL 139

Query: 308 AVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD-VDNVFRFFDQMVFHGAFPDSLTYNM 366
           A + +  M  IG  L P +   N +I  LC ND  VD   + F +M   G  PDS TY  
Sbjct: 140 AFKFYKNMREIG--LPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGT 197

Query: 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 426
           +   L +  R+ E +K F EM++ +  PT +   + I  L  +   + A+     +   G
Sbjct: 198 LISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKG 257

Query: 427 ILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
           I P   + + L+ GL   GR        E M+ R      VT   L      E +
Sbjct: 258 IEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQK 312



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 124/293 (42%), Gaps = 10/293 (3%)

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI----VDPDGDSFAILLEG 226
           D++    +E  VV+ + LLS ICR   +  R  + L    K+     DP   ++  +L  
Sbjct: 72  DLIVRMKIENCVVSEDILLS-ICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAYVTVLAI 130

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG-KQVDEALKFLRVMKGENC 285
             +E  +  A K +  M E     P  V +    +  L R    VD  LK    M    C
Sbjct: 131 LVEENQLNLAFKFYKNMREI--GLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGC 188

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P    +   +  L +      A +L+  MV    +  P ++ Y ++I  LC + +VD  
Sbjct: 189 DPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEK--DCAPTVVTYTSLINGLCGSKNVDEA 246

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
            R+ ++M   G  P+  TY+ + + L K+ R  +  + F  M+    +P  +   T IT 
Sbjct: 247 MRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITG 306

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
           L    + + A+E+ + +   G+ P      +++ G   + +  +   F +EM+
Sbjct: 307 LCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMI 359



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/255 (21%), Positives = 109/255 (42%), Gaps = 14/255 (5%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ ++    C  G+ DEA   F  M        VV   SL++ +C  +N    A+ +L  
Sbjct: 194 TYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKN-VDEAMRYLEE 252

Query: 209 VK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           +K K ++P+  +++ L++G  K+G   +A + F  M+ R    P +++ Y T +  L + 
Sbjct: 253 MKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMAR-GCRP-NMVTYTTLITGLCKE 310

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
           +++ EA++ L  M  +   P    +   +     ++    A    D M+  G  + PN +
Sbjct: 311 QKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGG--ITPNRL 368

Query: 328 MY-------NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEV 380
            +       N V+  LC N      F  +  M   G   +  T   + +CL K     + 
Sbjct: 369 TWNIHVKTSNEVVRGLCANYP-SRAFTLYLSMRSRGISVEVETLESLVKCLCKKGEFQKA 427

Query: 381 EKFFHEMIKNEWQPT 395
            +   E++ +   P+
Sbjct: 428 VQLVDEIVTDGCIPS 442


>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
 gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
          Length = 561

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 162/353 (45%), Gaps = 14/353 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +  +++ L K+G+ ++    + +M E G   ++ T++ + +  C AG+ D+       M+
Sbjct: 139 YTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMT 198

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEKEGNV 233
             G + DV+  N+LL+ +C+   +   ALE +   ++    P   ++  L+E + +   V
Sbjct: 199 RRGFQPDVIMYNTLLNGLCKSR-RLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQV 257

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           + A +    M ER    P  V+ Y T +  L R  ++D+A   L+ M    C P +  +S
Sbjct: 258 DRAFRLIQVMSER--GCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYS 315

Query: 294 NALDILVK--LNDS----THAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFR 347
             +D L K    D+      A ++ ++M   G    PN   Y  VI  LC          
Sbjct: 316 TIIDGLCKDWRVDADWKLEAACEILEMMKQTGCP--PNAGTYAVVIEGLCRARKSQQALA 373

Query: 348 FFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 407
              +M+     PD  +++M+   L K+  +    K F  M + E +P P+  A  I  L 
Sbjct: 374 LLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLS 433

Query: 408 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
              E + A+ ++  ++E+   P  A+ N +L GL  +GR+ +  R  E M+++
Sbjct: 434 KGGEVDKAVRVFELMVES-FRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHK 485



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 132/293 (45%), Gaps = 11/293 (3%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           A NL+V   G++G+  Q++   R +  +      T+ S+    C AGK D+A    D M 
Sbjct: 4   ALNLLVRA-GQHGQAVQLFREERCVPNE-----FTYGSLIHGLCKAGKLDQAYELLDEMR 57

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNV 233
             G+   V   N ++  +C+   +   AL +   V      PD  +F IL++   K G V
Sbjct: 58  DRGIPPGVAVHNGVIKGLCKA-GRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRV 116

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           EEA + F  M    +  P +V+ Y T +  L +  ++D A++ L +M    C P +  +S
Sbjct: 117 EEAFQIFESMHTSSQCLP-NVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYS 175

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             ++ L K   +     L   M   GF   P++IMYN ++  LC +  +D        M+
Sbjct: 176 VLVEGLCKAGRTDKGFTLLQEMTRRGFQ--PDVIMYNTLLNGLCKSRRLDEALELVQLMI 233

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406
             G +P  +TYN + E   ++K+V    +    M +    P  +N  T I  L
Sbjct: 234 RSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGL 286



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 129/317 (40%), Gaps = 39/317 (12%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG +     +N +++ L K+ R ++    V++M   G   ++ T+ S+ + +C + + D 
Sbjct: 200 RGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDR 259

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A     VMS  G   DV+  N++++ +CR              V     PD  +++ +++
Sbjct: 260 AFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIID 319

Query: 226 GWEKEGNVE-----EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
           G  K+  V+     EA     EM+++    P +   Y   +  L R ++  +AL  LR M
Sbjct: 320 GLCKDWRVDADWKLEAACEILEMMKQ-TGCPPNAGTYAVVIEGLCRARKSQQALALLRRM 378

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV----------------GIG----- 319
                 P L  FS  +  L K +D   A +++ +M                 G+      
Sbjct: 379 IDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEV 438

Query: 320 ------FNLM-----PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIF 368
                 F LM     P +  YN+V+  LC    ++   R  + M+    FPD  +Y  + 
Sbjct: 439 DKAVRVFELMVESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALI 498

Query: 369 ECLIKNKRVHEVEKFFH 385
             L +   V E  + F 
Sbjct: 499 RGLCRVSCVEEAYELFQ 515



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/286 (23%), Positives = 130/286 (45%), Gaps = 14/286 (4%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSYC------GAGKYDEAVM 168
           +N ++  L ++ R +     ++ M     V  + T+++I D  C         K + A  
Sbjct: 279 YNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACE 338

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGW 227
             ++M   G   +      ++  +CR   ++ +AL  L R +   V PD  SF++++   
Sbjct: 339 ILEMMKQTGCPPNAGTYAVVIEGLCRAR-KSQQALALLRRMIDSEVVPDLSSFSMVIGSL 397

Query: 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
            K  +++ A K FG M ER E  P  V AY   +  L +G +VD+A++   +M  E+  P
Sbjct: 398 CKSHDLDAAYKIFGMMSER-ECKPNPV-AYAALIDGLSKGGEVDKAVRVFELMV-ESFRP 454

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFR 347
            +  +++ LD L  +     AV++ + M  I     P+   Y A+I  LC    V+  + 
Sbjct: 455 GVATYNSVLDGLCGVGRIEEAVRMVEGM--IHKECFPDGASYGALIRGLCRVSCVEEAYE 512

Query: 348 FFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
            F  +   G   +   YN++   L K KR+ +     +++I+  ++
Sbjct: 513 LFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGVANKLIEAGYK 558



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 88/221 (39%), Gaps = 45/221 (20%)

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM-- 352
           AL++LV+      AVQL+          +PN   Y ++I  LC    +D  +   D+M  
Sbjct: 4   ALNLLVRAGQHGQAVQLFREE-----RCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRD 58

Query: 353 --------VFHGAF-------------------------PDSLTYNMIFECLIKNKRVHE 379
                   V +G                           PD +T+N++ + L+K+ RV E
Sbjct: 59  RGIPPGVAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEE 118

Query: 380 VEKFFHEM-IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 438
             + F  M   ++  P  +   T I  L    + + AIE+ + + E G  P   + + L+
Sbjct: 119 AFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLV 178

Query: 439 VGLRNLGRLSDVRRFAEEMLNRR----ILIYEVTMHKLKKA 475
            GL   GR        +EM  R     +++Y   ++ L K+
Sbjct: 179 EGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKS 219



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 48/104 (46%)

Query: 91  SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTF 150
           S+D  ++   F   + R  + +P A+  ++D L K G  ++      +M E     + T+
Sbjct: 400 SHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESFRPGVATY 459

Query: 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194
            S+ D  CG G+ +EAV   + M       D  +  +L+  +CR
Sbjct: 460 NSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCR 503


>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
 gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
          Length = 570

 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 92/385 (23%), Positives = 167/385 (43%), Gaps = 19/385 (4%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
           NL++  L K+G+     +       +G  + + T+ +I D      K  +AV   + ++ 
Sbjct: 134 NLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITA 193

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD----PDGDSFAILLEGWEKEG 231
           +G    +   N+LL+ +C+      R  E ++ ++KIVD    PD  ++  L++G  KE 
Sbjct: 194 NGCTPTIATYNALLNGLCKM----GRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEK 249

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
              EA K F EM  R        + Y   +  L++  ++ +A    + M  + C P +  
Sbjct: 250 RSFEAYKLFKEMALR--GLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVT 307

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
            S  +D L K      AV+++  M   G  L PN ++Y+A+I  LC    +D       Q
Sbjct: 308 LSTMIDGLCKAGRIGAAVRIFKSMEARG--LAPNEVVYSALIHGLCKARKMDCALEMLAQ 365

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M      PD++TYN++ + L K+  V     FF EM++   +P        ++    A  
Sbjct: 366 MKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGN 425

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI----LIYEV 467
            + A  +++ +  +   P   +   L+ GL    +L+    + + M  R       +Y  
Sbjct: 426 TDAACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFVYSS 485

Query: 468 TMHKLKKAFYNESRSMRDIFDSLER 492
            +  L K+   E   M  +FD +ER
Sbjct: 486 LVDGLCKSGKLEGGCM--LFDEMER 508



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 132/311 (42%), Gaps = 9/311 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F   A RG  L    +  ++  L + G+  Q  +  + M   G +  + T +++ D  C 
Sbjct: 258 FKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCK 317

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGD 218
           AG+   AV  F  M   G+  + V  ++L+  +C+       ALE L ++KK    PD  
Sbjct: 318 AGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDC-ALEMLAQMKKAFCTPDTI 376

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++ IL++G  K G+VE A   F EM+E     P+ V  Y   +    +    D A     
Sbjct: 377 TYNILIDGLCKSGDVEAARAFFDEMLEA-GCKPD-VYTYNILVSGFCKAGNTDAACGVFD 434

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            M   +C P +  +   +  L K    T A   +  M   G    P+  +Y++++  LC 
Sbjct: 435 DMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCP--PDSFVYSSLVDGLCK 492

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
           +  ++     FD+M   G         +IF  L K  RV E    F+  I+ E  P P  
Sbjct: 493 SGKLEGGCMLFDEMERSGVANSQTRTRLIFH-LCKANRVDEAVSLFNA-IRKEGMPHPYA 550

Query: 399 CATAITMLLDA 409
             + I+ L+ +
Sbjct: 551 YNSIISTLIKS 561



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/313 (21%), Positives = 135/313 (43%), Gaps = 5/313 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N +++ L K GR E+  + +R + ++G    + T+ S+ D      +  EA   F  M+
Sbjct: 203 YNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMA 262

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
           + G+  D V   +L+  + +       +  +     +   PD  + + +++G  K G + 
Sbjct: 263 LRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIG 322

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
            A + F  M  R    P  V+ Y   +  L + +++D AL+ L  MK   C P    ++ 
Sbjct: 323 AAVRIFKSMEAR-GLAPNEVV-YSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNI 380

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
            +D L K  D   A   +D M+  G    P++  YN ++   C   + D     FD M  
Sbjct: 381 LIDGLCKSGDVEAARAFFDEMLEAGCK--PDVYTYNILVSGFCKAGNTDAACGVFDDMSS 438

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 414
               P+ +TY  +   L K +++ +   +F  M +    P     ++ +  L  + + E 
Sbjct: 439 SHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKSGKLEG 498

Query: 415 AIEIWNYILENGI 427
              +++ +  +G+
Sbjct: 499 GCMLFDEMERSGV 511



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 66/162 (40%)

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
           + + P+L  +N V+  LC +  V      F+    +G   D  TY  I + L KNK++ +
Sbjct: 124 YGVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVDWLAKNKKIQD 183

Query: 380 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 439
                 ++  N   PT       +  L      E AI++   I++NG  P   +   L+ 
Sbjct: 184 AVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLID 243

Query: 440 GLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
           GL    R  +  +  +EM  R +++  V    L +      +
Sbjct: 244 GLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGK 285


>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 618

 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 155/332 (46%), Gaps = 10/332 (3%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T  ++ +  C  G+  EA++  D M  +G E + +    +L+ +C+  N T+ AL+   +
Sbjct: 176 TVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGN-TALALDLFRK 234

Query: 209 VK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           ++ + +      ++I+++   K+GN+++A   F EM    +     V+AY + +  L   
Sbjct: 235 MEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEM--EMKGIKADVVAYSSIIGGLCND 292

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
            + D+  K LR M G N  P +  FS  +D+ VK      A +L++ MV  G  + P+ I
Sbjct: 293 GRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARG--IAPDTI 350

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            Y+++I   C  + +    +  D MV  G  P+ +TY+++     K KRV    + F E+
Sbjct: 351 TYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEI 410

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
                    +   T +     + +  +A E++  ++  G+ P   +   LL GL + G L
Sbjct: 411 SSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGEL 470

Query: 448 SDVRRFAEEMLNRRIL----IYEVTMHKLKKA 475
                  E+M   R++    IY + +H +  A
Sbjct: 471 QKALEIFEKMQKSRMILGIGIYNIIIHGMCNA 502



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/348 (20%), Positives = 152/348 (43%), Gaps = 40/348 (11%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAG 161
           R    G   +   +  +++ + K+G      +  R M+E  +  S+  ++ + DS C  G
Sbjct: 199 RMVKYGCEANEITYGPVLNRMCKSGNTALALDLFRKMEERSIKASVVQYSIVIDSLCKDG 258

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221
             D+A+  F+ M M G++ DVVA +S++  +C        A      + + + P+  +F+
Sbjct: 259 NLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFS 318

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L++ + KEG + EA + + EMV R    P+ +  Y + +    +  ++ EA + L +M 
Sbjct: 319 ALIDVFVKEGKLLEAKELYNEMVAR-GIAPDTI-TYSSLIDGFCKENRLGEANQMLDLMV 376

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
            + C                                      PN++ Y+ +I   C    
Sbjct: 377 SKGC-------------------------------------EPNIVTYSILINSYCKAKR 399

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
           VDN  R F ++   G   D++TYN + +   ++ +++  ++ F EM+     P+ +    
Sbjct: 400 VDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGI 459

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 449
            +  L D  E + A+EI+  + ++ ++      N ++ G+ N  ++ D
Sbjct: 460 LLDGLCDNGELQKALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDD 507



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 76/351 (21%), Positives = 159/351 (45%), Gaps = 7/351 (1%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y  N+M++   +  +    ++ V R +K     +  TF+++ + +C  G+  EAV   D 
Sbjct: 105 YTMNIMINCFCRKRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDR 164

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEG 231
           M       +VV VN+L++ +C +  + + AL  ++R VK   + +  ++  +L    K G
Sbjct: 165 MVEMKYRPNVVTVNTLINGLCLK-GRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSG 223

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           N   A   F +M ER       V+ Y   + +L +   +D+AL     M+ +     +  
Sbjct: 224 NTALALDLFRKMEER--SIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVA 281

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           +S+ +  L          ++   M  IG N++PN++ ++A+I +      +      +++
Sbjct: 282 YSSIIGGLCNDGRWDDGAKMLREM--IGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNE 339

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           MV  G  PD++TY+ + +   K  R+ E  +    M+    +P  +  +  I     A  
Sbjct: 340 MVARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKR 399

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
            +  + ++  I   G++    + N L+ G    G+L+  +   +EM++R +
Sbjct: 400 VDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGV 450



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 153/340 (45%), Gaps = 20/340 (5%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE------NQT 199
           SL  F+ +F +     +YD  +     M ++G+E ++  +N +++  CR+       +  
Sbjct: 68  SLIDFSKLFSAVARRKEYDLVLGFCKEMDLNGIEHNMYTMNIMINCFCRKRKLLFAFSVV 127

Query: 200 SRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYET 259
            RAL+F        +P+  +F+ L+ G+  EG V EA      MVE  ++ P +V+   T
Sbjct: 128 GRALKFG------FEPNTITFSTLINGFCLEGRVSEAVALVDRMVE-MKYRP-NVVTVNT 179

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG 319
            +  L    +V EAL  +  M    C      +   L+ + K  ++  A+ L+  M    
Sbjct: 180 LINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLFRKME--E 237

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
            ++  +++ Y+ VI  LC + ++D+    F++M   G   D + Y+ I   L  + R  +
Sbjct: 238 RSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDD 297

Query: 380 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 439
             K   EMI     P  +  +  I + +   +   A E++N ++  GI P   + + L+ 
Sbjct: 298 GAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLID 357

Query: 440 GLRNLGRLSDVRRFAEEMLNR----RILIYEVTMHKLKKA 475
           G     RL +  +  + M+++     I+ Y + ++   KA
Sbjct: 358 GFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKA 397



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 138/297 (46%), Gaps = 19/297 (6%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G +    A++ ++  L  +GR++     +R M    ++ ++ TF+++ D +   GK  E
Sbjct: 273 KGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLE 332

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILL 224
           A   ++ M   G+  D +  +SL+   C+ EN+   A + L+  V K  +P+  +++IL+
Sbjct: 333 AKELYNEMVARGIAPDTITYSSLIDGFCK-ENRLGEANQMLDLMVSKGCEPNIVTYSILI 391

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
             + K   V+   + F E+  +        + Y T +    +  +++ A +  + M    
Sbjct: 392 NSYCKAKRVDNGMRLFCEISSK--GLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRG 449

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIM------VGIGFNLMPNLIMYNAVIGLLCN 338
             P++  +   LD L    +   A+++++ M      +GIG        +YN +I  +CN
Sbjct: 450 VPPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGIG--------IYNIIIHGMCN 501

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 395
              VD+ +  F  +   G  PD LTYN++   L K   + E +  F +M ++   P+
Sbjct: 502 ASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRKMKEDGCAPS 558


>gi|297791089|ref|XP_002863429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297309264|gb|EFH39688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 472

 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 135/287 (47%), Gaps = 9/287 (3%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRV---MKE-DGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           ++++ +    GR  + ++++RV   MK+ D   S   + ++        + + A   +  
Sbjct: 87  DILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKN 146

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEG 231
           M   G+   V ++N L+ A+CR +      L+  + + K+  DPD  ++  L+ G  + G
Sbjct: 147 MREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFHEMPKRGCDPDSYTYGTLISGLCRFG 206

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            ++EA K F EMVE+ +  P  V+ Y + +  L   K VDEA++++  MKG+   P +  
Sbjct: 207 RIDEAKKLFTEMVEK-DCAPT-VVTYTSLINGLCGSKNVDEAMRYVEEMKGKGIEPNVFT 264

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           +S+ +D L K   S  A++L+++M+  G    PN++ Y  +I  LC    +       D+
Sbjct: 265 YSSLMDGLCKDGRSLQAMELFEMMMARGCR--PNMVTYTTLITGLCKEQKIQEAVELLDR 322

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
           M   G  PD+  Y  +        +  E   F  EMI     P  L 
Sbjct: 323 MNLQGLKPDAGLYGKVISGFCAVSKFREAANFLDEMILGGITPNRLT 369



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 102/235 (43%), Gaps = 7/235 (2%)

Query: 252 EHVLAYETFLITLIRG-KQVDEALKFLRV---MKGENCFPTLKFFSNALDILVKLNDSTH 307
           E+ +  E  L+++ RG  +V      LRV   MK  +C P+ K +   L ILV+ N    
Sbjct: 80  ENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAYVTVLAILVEENQLNL 139

Query: 308 AVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD-VDNVFRFFDQMVFHGAFPDSLTYNM 366
           A + +  M  IG  L P +   N +I  LC ND  VD   + F +M   G  PDS TY  
Sbjct: 140 AFKFYKNMREIG--LPPTVASLNVLIKALCRNDGTVDAGLKIFHEMPKRGCDPDSYTYGT 197

Query: 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 426
           +   L +  R+ E +K F EM++ +  PT +   + I  L  +   + A+     +   G
Sbjct: 198 LISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYVEEMKGKG 257

Query: 427 ILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
           I P   + + L+ GL   GR        E M+ R      VT   L      E +
Sbjct: 258 IEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQK 312



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 72/315 (22%), Positives = 132/315 (41%), Gaps = 13/315 (4%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           +F  +      A K+  A    D+++   +E  VV+ + LLS ICR   +  R  + L  
Sbjct: 53  SFGYMVSRLVSANKFKAAE---DIVARMKIENCVVSEDILLS-ICRGYGRVHRPFDSLRV 108

Query: 209 VKKI----VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
             K+     DP   ++  +L    +E  +  A K +  M E     P  V +    +  L
Sbjct: 109 FHKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKNMREI--GLPPTVASLNVLIKAL 166

Query: 265 IRG-KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLM 323
            R    VD  LK    M    C P    +   +  L +      A +L+  MV    +  
Sbjct: 167 CRNDGTVDAGLKIFHEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEK--DCA 224

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           P ++ Y ++I  LC + +VD   R+ ++M   G  P+  TY+ + + L K+ R  +  + 
Sbjct: 225 PTVVTYTSLINGLCGSKNVDEAMRYVEEMKGKGIEPNVFTYSSLMDGLCKDGRSLQAMEL 284

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
           F  M+    +P  +   T IT L    + + A+E+ + +   G+ P      +++ G   
Sbjct: 285 FEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCA 344

Query: 444 LGRLSDVRRFAEEML 458
           + +  +   F +EM+
Sbjct: 345 VSKFREAANFLDEMI 359



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 63/296 (21%), Positives = 121/296 (40%), Gaps = 36/296 (12%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE-DGVLSLPTFASIFDSYCG 159
           F     RG     Y +  ++  L + GR ++       M E D   ++ T+ S+ +  CG
Sbjct: 180 FHEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCG 239

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGD 218
           +   DEA+   + M   G+E +V   +SL+  +C+ + ++ +A+E F   + +   P+  
Sbjct: 240 SKNVDEAMRYVEEMKGKGIEPNVFTYSSLMDGLCK-DGRSLQAMELFEMMMARGCRPNMV 298

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++  L+ G  KE  ++EA     E+++R                  ++G + D  L + +
Sbjct: 299 TYTTLITGLCKEQKIQEAV----ELLDRMN----------------LQGLKPDAGL-YGK 337

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
           V+ G       +  +N LD ++ L   T     W+I V             N V+  LC 
Sbjct: 338 VISGFCAVSKFREAANFLDEMI-LGGITPNRLTWNIHVKTS----------NEVVRGLCT 386

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
           N      F  +  M   G   +  T + + +CL K     +  +   E++ +   P
Sbjct: 387 NYP-SRAFTLYLSMRSRGISVEVETLDSLVKCLCKKGEFQKAVQLVDEIVTDGCIP 441



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 77/180 (42%), Gaps = 4/180 (2%)

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN-KRVH 378
           F+  P+   Y  V+ +L   + ++  F+F+  M   G  P   + N++ + L +N   V 
Sbjct: 115 FDCDPSQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVD 174

Query: 379 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 438
              K FHEM K    P      T I+ L      + A +++  ++E    P   +   L+
Sbjct: 175 AGLKIFHEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLI 234

Query: 439 VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMR--DIFD-SLERRCK 495
            GL     + +  R+ EEM  + I     T   L      + RS++  ++F+  + R C+
Sbjct: 235 NGLCGSKNVDEAMRYVEEMKGKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCR 294


>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
          Length = 425

 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 165/359 (45%), Gaps = 11/359 (3%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMK----EDGVLSLPTFASIFDSYC 158
           R   +G +     + ++V+ L K G  +  +N +  M+    E GVL    + +I D  C
Sbjct: 6   RMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVL---IYNTIIDGLC 62

Query: 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD 218
                D+A+  F  M   G+  +VV  +SL+S +C     +  +    + +++ ++PD  
Sbjct: 63  KYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVF 122

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           +F+ L++ + KEG + EA K + EMV+R   +P  ++ Y + +       ++DEA +   
Sbjct: 123 TFSALIDAFVKEGKLVEAEKLYDEMVKR-SIDP-SIVTYSSLINGFCMHDRLDEAKQMFE 180

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            M  ++CFP +  ++  +    K       ++++  M   G  L+ N + YN +I  L  
Sbjct: 181 FMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRG--LVGNTVTYNILIQGLFQ 238

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
             D D     F +MV  G  P+ +TYN + + L KN ++ +    F  + +++ +PT   
Sbjct: 239 AGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYT 298

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
               I  +  A + E   +++  +   G+ P   + N ++ G    G   +     +EM
Sbjct: 299 YNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEM 357



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 134/278 (48%), Gaps = 6/278 (2%)

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEK 229
           D M   G + D+V    +++ +C++   T  A   LN++++  ++P    +  +++G  K
Sbjct: 5   DRMVAKGCQPDLVTYGVVVNGLCKR-GDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCK 63

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
             ++++A   F EM E     P +V+ Y + +  L    +  +A + L  M      P +
Sbjct: 64  YKHMDDALNLFKEM-ETKGIRP-NVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDV 121

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
             FS  +D  VK      A +L+D MV    +  P+++ Y+++I   C +D +D   + F
Sbjct: 122 FTFSALIDAFVKEGKLVEAEKLYDEMVKRSID--PSIVTYSSLINGFCMHDRLDEAKQMF 179

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 409
           + MV    FPD +TYN + +   K KRV E  + F EM +       +     I  L  A
Sbjct: 180 EFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQA 239

Query: 410 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
            + ++A EI+  ++ +G+ P   + N LL GL   G+L
Sbjct: 240 GDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKL 277



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 79/360 (21%), Positives = 153/360 (42%), Gaps = 11/360 (3%)

Query: 92  YDSPSSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPT 149
           Y     A++ F+    +G R +   ++ ++  L   GR+      +  M E  +   + T
Sbjct: 64  YKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFT 123

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE--NQTSRALEFLN 207
           F+++ D++   GK  EA   +D M    ++  +V  +SL++  C  +  ++  +  EF+ 
Sbjct: 124 FSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFM- 182

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            V K   PD  ++  L++G+ K   VEE  + F EM +R      + + Y   +  L + 
Sbjct: 183 -VSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVG--NTVTYNILIQGLFQA 239

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
              D A +  + M  +   P +  ++  LD L K      A+ +++ +      + P + 
Sbjct: 240 GDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQR--SKMEPTIY 297

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            YN +I  +C    V++ +  F  +   G  PD + YN +     +     E +  F EM
Sbjct: 298 TYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEM 357

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
            ++   P      T I   L   + E + E+   +   G    +AS   L+  + + GRL
Sbjct: 358 KEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAG-DASTIGLVTNMLHDGRL 416



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/225 (21%), Positives = 96/225 (42%), Gaps = 2/225 (0%)

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
           ++ Y   +  L +    D A   L  M+     P +  ++  +D L K      A+ L+ 
Sbjct: 16  LVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFK 75

Query: 314 IMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 373
            M   G  + PN++ Y+++I  LCN     +  R    M+     PD  T++ + +  +K
Sbjct: 76  EMETKG--IRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVK 133

Query: 374 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 433
             ++ E EK + EM+K    P+ +  ++ I      D  + A +++ +++     P   +
Sbjct: 134 EGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVT 193

Query: 434 ANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 478
            N L+ G     R+ +      EM  R ++   VT + L +  + 
Sbjct: 194 YNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQ 238



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 94/216 (43%), Gaps = 4/216 (1%)

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
           M  + C P L  +   ++ L K  D+  A  L + M      L P +++YN +I  LC  
Sbjct: 7   MVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQ--GKLEPGVLIYNTIIDGLCKY 64

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
             +D+    F +M   G  P+ +TY+ +  CL    R  +  +   +MI+ +  P     
Sbjct: 65  KHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTF 124

Query: 400 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
           +  I   +   +   A ++++ +++  I P   + + L+ G     RL + ++  E M++
Sbjct: 125 SALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVS 184

Query: 460 RRILIYEVTMHKLKKAF--YNESRSMRDIFDSLERR 493
           +      VT + L K F  Y       ++F  + +R
Sbjct: 185 KHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQR 220



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 2/148 (1%)

Query: 348 FFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 407
             D+MV  G  PD +TY ++   L K           ++M + + +P  L   T I  L 
Sbjct: 3   LIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLC 62

Query: 408 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEV 467
                + A+ ++  +   GI P   + + L+  L N GR SD  R   +M+ R+I     
Sbjct: 63  KYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVF 122

Query: 468 TMHKLKKAFYNESR--SMRDIFDSLERR 493
           T   L  AF  E +      ++D + +R
Sbjct: 123 TFSALIDAFVKEGKLVEAEKLYDEMVKR 150


>gi|225430658|ref|XP_002268375.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
           mitochondrial [Vitis vinifera]
 gi|296085168|emb|CBI28663.3| unnamed protein product [Vitis vinifera]
          Length = 454

 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 94/396 (23%), Positives = 174/396 (43%), Gaps = 17/396 (4%)

Query: 68  IESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYA--WNLMVDVLGK 125
           +E  L    I  T DLV+ VL+   +S + ++ FF WA       P    +  ++  L +
Sbjct: 63  LERTLNKLPISVTSDLVYRVLRSCPNSGTESLRFFNWARSHLSYQPTTLEYEELLKTLAR 122

Query: 126 NGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD-VMSMHGVEQDVVA 184
             +F+ MW     M+    LS    +SI + +   G  D+AV  F+   S     Q +  
Sbjct: 123 TKQFQPMWKIAHQMQ---TLSPTVVSSIIEEFGKHGLVDQAVEVFNKAKSALNCPQTIEV 179

Query: 185 VNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244
            NSLL A+C  +            ++K V P+  ++++L+ GW   G ++EA + F E +
Sbjct: 180 YNSLLFALCEVKYFHGAYALIRRMIRKGVTPNKQTYSVLVNGWCAAGKMKEA-QDFLEEM 238

Query: 245 ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 304
            R  +NP  V   +  +  L+    ++ A + +R M  E C P ++  ++ L+ + K  +
Sbjct: 239 SRKGFNPP-VRGRDLLVDGLLNAGYLEAAKEMVRKMTKEGCAPDVETLNSMLEAICKAGE 297

Query: 305 STHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTY 364
           +   + +++ +  +G +  PN+  Y  +I   C    +D  FR   + +  G  P    Y
Sbjct: 298 AEFCIDIYNDVCRLGVS--PNVGTYKIMIPAACKEGRIDEAFRILHRSIEDGHRPFPSLY 355

Query: 365 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 424
             I + L +N +  +   FF +M      P        ITM          ++  NY++E
Sbjct: 356 APIIKALCRNGQFDDAFCFFSDMKVKGHPPNRPVYTMLITMCGRGGR---FVDAANYLVE 412

Query: 425 N---GILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
                + P+    + +  GL+N G+  D+ R  E++
Sbjct: 413 MTELNLTPISRCFDMVTDGLKNCGK-HDLARKIEQL 447


>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
 gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
          Length = 688

 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 151/334 (45%), Gaps = 6/334 (1%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  F     S     +Y   V   + M + GV   V ++N L++ +CR  N    A+  
Sbjct: 92  SIVEFGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYSLNILINCLCRL-NHVDFAVSV 150

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
             ++ K+ + PD  +F  L+ G   EG ++ A + + EMV R    P+ V++Y T +  L
Sbjct: 151 WGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMV-RSGHEPD-VISYNTLINGL 208

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
                 + A+   + M+   C P +  ++  +D L K      A+     MVG G  + P
Sbjct: 209 CNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRG--IPP 266

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           + I YN+++  LC    ++   R F +M  +G  PD +TYN+I + L K++ V++   F 
Sbjct: 267 DAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFL 326

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
            EM+     P  +   T +  L    +   AI ++  + + G  P   + N ++  L   
Sbjct: 327 SEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKD 386

Query: 445 GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 478
             ++D   F  EM++R I    VT   +   F N
Sbjct: 387 RLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCN 420



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 95/397 (23%), Positives = 176/397 (44%), Gaps = 9/397 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F+R A    R S   +   +  + K  ++  +      M   GV  ++ +   + +  C 
Sbjct: 81  FYRMARMNPRPSIVEFGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYSLNILINCLCR 140

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGD 218
               D AV  +  M   G++ DV+   +L++ +C  E +   A+E  N  V+   +PD  
Sbjct: 141 LNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVC-NEGKIKVAVELYNEMVRSGHEPDVI 199

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           S+  L+ G    GN   A   F +M E+    P +V+ Y T + +L + + V++A+ FL 
Sbjct: 200 SYNTLINGLCNSGNTNMAVHVFKKM-EQNGCKP-NVVTYNTIIDSLCKDRLVNDAMDFLS 257

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            M G    P    +++ +  L  L     A +L+  M   G    P+++ YN +I  L  
Sbjct: 258 EMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCK--PDVVTYNIIIDSLYK 315

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
           +  V++   F  +MV  G  PD +TY  I   L    +++E  + F +M +   +P  + 
Sbjct: 316 DRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVA 375

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
             T I  L        A+E  + +++ GI P   + + +L G  NLG+L +  +  +EM+
Sbjct: 376 YNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMV 435

Query: 459 NRRILIYEVTMHKLKKAFYNES--RSMRDIFDSLERR 493
            R ++   +T   L      E      R +F+++  +
Sbjct: 436 GRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEK 472



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 154/326 (47%), Gaps = 9/326 (2%)

Query: 136 VRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
           VR   E  V+S   + ++ +  C +G  + AV  F  M  +G + +VV  N+++ ++C+ 
Sbjct: 190 VRSGHEPDVIS---YNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCK- 245

Query: 196 ENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV 254
           +   + A++FL+  V + + PD  ++  ++ G    G + EA + F  M E+    P+ V
Sbjct: 246 DRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRM-EQNGCKPD-V 303

Query: 255 LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314
           + Y   + +L + + V++A  FL  M  +   P +  ++  L  L  L     A++L+  
Sbjct: 304 VTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKK 363

Query: 315 MVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN 374
           M   G    P+++ YN +I  LC +  V++   F  +MV  G  P+++TY+ I       
Sbjct: 364 MEQKGCK--PDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNL 421

Query: 375 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 434
            ++ E  + F EM+     P  L  +  +  L        A  ++  + E G+ P   + 
Sbjct: 422 GQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTY 481

Query: 435 NELLVGLRNLGRLSDVRRFAEEMLNR 460
           N L+ G     ++++ R+  E M+ +
Sbjct: 482 NALMNGYCLRCKMNEARKVFEIMVGK 507



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 97/425 (22%), Positives = 187/425 (44%), Gaps = 50/425 (11%)

Query: 67  DIESALACTGIIPTP----DLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDV 122
           D  S +   GI P       +VH +  L   + ++ + F R    G +     +N+++D 
Sbjct: 254 DFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRL-FKRMEQNGCKPDVVTYNIIIDS 312

Query: 123 LGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD 181
           L K+       + +  M + G+   + T+ +I    C  G+ +EA+  F  M   G + D
Sbjct: 313 LYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPD 372

Query: 182 VVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTF 240
           VVA N+++ ++C+ +   + A+EFL+  V + + P+  +++ +L G+   G ++EA + F
Sbjct: 373 VVAYNTIIDSLCK-DRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLF 431

Query: 241 GEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS---NALD 297
            EMV R      + L +   +  L +   V EA      M  +   P +  ++   N   
Sbjct: 432 KEMVGRNVM--PNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYC 489

Query: 298 ILVKLNDSTHAVQLWDIMVGIG-------FNLM--------------------------P 324
           +  K+N+   A ++++IMVG G       +N++                          P
Sbjct: 490 LRCKMNE---ARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTP 546

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           N + YN ++  LC    + +    F +M   G  P  +TY+++   L K+  + E  K F
Sbjct: 547 NTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLF 606

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
             M + + +P  +     I  +    + E+A  +++ +  +GI P   + N ++ GL   
Sbjct: 607 KSMKEKKLEPDIILYTILIEGMFIGGKLEVAKGLFSKLSADGIQPPGRTYNVMIKGLLKE 666

Query: 445 GRLSD 449
           G LSD
Sbjct: 667 G-LSD 670



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 141/314 (44%), Gaps = 4/314 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF ++ +  C  GK   AV  ++ M   G E DV++ N+L++ +C   N       F   
Sbjct: 165 TFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKM 224

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
            +    P+  ++  +++   K+  V +A     EMV R    P   + Y + +  L    
Sbjct: 225 EQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGR--GIPPDAITYNSIVHGLCCLG 282

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           Q++EA +  + M+   C P +  ++  +D L K      A      MV  G  + P+++ 
Sbjct: 283 QLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQG--IPPDVVT 340

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           Y  ++  LC    ++   R F +M   G  PD + YN I + L K++ V++  +F  EM+
Sbjct: 341 YTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMV 400

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
                P  +  +T +    +  + + A +++  ++   ++P   + + L+ GL   G +S
Sbjct: 401 DRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVS 460

Query: 449 DVRRFAEEMLNRRI 462
           + R   E M  + +
Sbjct: 461 EARWVFETMTEKGV 474


>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 92/387 (23%), Positives = 176/387 (45%), Gaps = 8/387 (2%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEA 166
           G  L+ Y  N+MV+ L K+ +FE +   +  M+  GV + + T+ ++ ++YC  G  +EA
Sbjct: 252 GIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEA 311

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLE 225
               +  S  G+E  ++  N++L  +C+   +  RA + L  + ++ + P+  ++  LL 
Sbjct: 312 FQLLNSFSSRGMEPGLLTYNAILYGLCKI-GKYDRAKDVLIEMLQLGLTPNAATYNTLLV 370

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
              +  N+ EA + F EM  R    P+ V ++ + +  L R   + +AL   R M+    
Sbjct: 371 EICRRDNILEAQEIFDEMSRRGVL-PDLV-SFSSLIGVLARNGHLYQALMHFREMERSGI 428

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P    ++  +D   +    + A+++ D M+  G     +++ YN  +  LC      + 
Sbjct: 429 VPDNVIYTILIDGFCRNGALSDALKMRDEMLARG--CFMDVVTYNTFLNGLCKKKMFADA 486

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
              F++MV  G  PD  T+  +     K+  + +    F  M++   +P  +   T I  
Sbjct: 487 DMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDG 546

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 465
              A E   A E+W+ ++   I+P   S   +L G  + G L +     ++ML + I   
Sbjct: 547 FCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPN 606

Query: 466 EVTMHKLKKAFYNESRSMRDIFDSLER 492
            VT + L K  Y  S  M   ++ L +
Sbjct: 607 LVTCNTLIKG-YCRSGDMPKAYEYLSK 632



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/376 (23%), Positives = 163/376 (43%), Gaps = 5/376 (1%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
           G+G       +N +++   + G  E+ +  +      G+   L T+ +I    C  GKYD
Sbjct: 285 GKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYD 344

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
            A      M   G+  +    N+LL  ICR++N       F    ++ V PD  SF+ L+
Sbjct: 345 RAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLI 404

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
               + G++ +A   F EM ER    P++V+ Y   +    R   + +ALK    M    
Sbjct: 405 GVLARNGHLYQALMHFREM-ERSGIVPDNVI-YTILIDGFCRNGALSDALKMRDEMLARG 462

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
           CF  +  ++  L+ L K      A  L++ MV  G  ++P+   +  +I   C + ++D 
Sbjct: 463 CFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERG--MVPDFYTFTTLIRGYCKDGNMDK 520

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
               F+ MV     PD +TYN + +   K   +   ++ + +MI+ +  P  ++  T + 
Sbjct: 521 ALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLN 580

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 464
               +     A+ + + +LE GI P   + N L+ G    G +     +  +M++  I+ 
Sbjct: 581 GFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIP 640

Query: 465 YEVTMHKLKKAFYNES 480
              + + L   +  E+
Sbjct: 641 DSFSYNTLIDGYLKEA 656



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 86/379 (22%), Positives = 159/379 (41%), Gaps = 5/379 (1%)

Query: 104 WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGK 162
           ++ RG       +N ++  L K G++++  + +  M + G+  +  T+ ++    C    
Sbjct: 318 FSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDN 377

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
             EA   FD MS  GV  D+V+ +SL+  + R  +     + F    +  + PD   + I
Sbjct: 378 ILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTI 437

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L++G+ + G + +A K   EM+ R  +    V+ Y TFL  L + K   +A      M  
Sbjct: 438 LIDGFCRNGALSDALKMRDEMLARGCF--MDVVTYNTFLNGLCKKKMFADADMLFNEMVE 495

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
               P    F+  +    K  +   A+ L++ MV    NL P+ + YN +I   C   ++
Sbjct: 496 RGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRT--NLKPDKVTYNTLIDGFCKAGEM 553

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
                 +D M+     PD ++Y  +      +  + E      +M++   +P  + C T 
Sbjct: 554 GRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTL 613

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
           I     + +   A E  + ++ NGI+P   S N L+ G      L        EM  R +
Sbjct: 614 IKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGL 673

Query: 463 LIYEVTMHKLKKAFYNESR 481
               +T + +   F  E +
Sbjct: 674 QFNIITYNLILNGFCAEGK 692



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/404 (21%), Positives = 172/404 (42%), Gaps = 15/404 (3%)

Query: 68  IESALACTGIIPTPDLVHEVLQLSY------DSPSSAVDFFRWAGRGQRLSPYAWNLMVD 121
           +ES ++      +  L++++L  +Y         S A    R   +G  +S  A N ++ 
Sbjct: 173 VESLISTCFYFGSVGLIYDLLVRTYVQAKKLREGSEAFQILRR--KGVSVSINACNKLLG 230

Query: 122 VLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQ 180
            L + G  +  W     +   G+ L++ T   + ++ C   K++  +     M   GV  
Sbjct: 231 GLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFA 290

Query: 181 DVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKT 239
           D+V  N+L++A CR E     A + LN    + ++P   ++  +L G  K G  + A   
Sbjct: 291 DIVTYNTLINAYCR-EGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDV 349

Query: 240 FGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299
             EM++     P +   Y T L+ + R   + EA +    M      P L  FS+ + +L
Sbjct: 350 LIEMLQ-LGLTP-NAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVL 407

Query: 300 VKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFP 359
            +      A+  +  M   G  ++P+ ++Y  +I   C N  + +  +  D+M+  G F 
Sbjct: 408 ARNGHLYQALMHFREMERSG--IVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFM 465

Query: 360 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 419
           D +TYN     L K K   + +  F+EM++    P      T I         + A+ ++
Sbjct: 466 DVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLF 525

Query: 420 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
             ++   + P + + N L+ G    G +   +   ++M+ + I+
Sbjct: 526 EAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDII 569



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 85/412 (20%), Positives = 166/412 (40%), Gaps = 41/412 (9%)

Query: 56  ICEILAHASSDDIESALACTGIIPTPDLVHEVLQ--LSYDSPSSAVDFF-RWAGRGQRLS 112
           +C+I  +  + D+   +   G+ P     + +L      D+   A + F   + RG    
Sbjct: 337 LCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPD 396

Query: 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIF-DSYCGAGKYDEAVMSFD 171
             +++ ++ VL +NG   Q     R M+  G++      +I  D +C  G   +A+   D
Sbjct: 397 LVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRD 456

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
            M   G   DVV  N+ L+ +C+++      + F   V++ + PD  +F  L+ G+ K+G
Sbjct: 457 EMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDG 516

Query: 232 NVEEANKTFGEMV------ERFEWN----------------------------PEHVLAY 257
           N+++A   F  MV      ++  +N                            P+H+ +Y
Sbjct: 517 NMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHI-SY 575

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317
            T L        + EAL     M  +   P L   +  +    +  D   A +    M+ 
Sbjct: 576 GTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMIS 635

Query: 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
            G  ++P+   YN +I       +++  F   ++M   G   + +TYN+I        ++
Sbjct: 636 NG--IIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKM 693

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
            E E+   +MI+    P     ++ I   +  D  + A    + +L+ G++P
Sbjct: 694 QEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVP 745



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 115/251 (45%), Gaps = 48/251 (19%)

Query: 115 AWNLMVDVL---GKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
            +N ++D     G+ GR +++W+ +  +++D +    ++ ++ + +C +G   EA+   D
Sbjct: 539 TYNTLIDGFCKAGEMGRAKELWDDM--IRKDIIPDHISYGTVLNGFCSSGLLPEALNLCD 596

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKE 230
            M   G+  ++V  N+L+   CR  +   +A E+L++ +   + PD  S+  L++G+ KE
Sbjct: 597 QMLEKGIRPNLVTCNTLIKGYCRSGDM-PKAYEYLSKMISNGIIPDSFSYNTLIDGYLKE 655

Query: 231 GNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
            N+E+A     EM +R  ++N   ++ Y   L       ++ EA + LR M         
Sbjct: 656 ANLEKAFILINEMEKRGLQFN---IITYNLILNGFCAEGKMQEAEQVLRKM--------- 703

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
                                     + IG N  P+   Y+++I    + D++   FRF 
Sbjct: 704 --------------------------IEIGIN--PDGATYSSLINGHVSQDNMKEAFRFH 735

Query: 350 DQMVFHGAFPD 360
           D+M+  G  PD
Sbjct: 736 DEMLQRGLVPD 746


>gi|449436409|ref|XP_004135985.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Cucumis sativus]
          Length = 868

 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 109/496 (21%), Positives = 204/496 (41%), Gaps = 43/496 (8%)

Query: 19  SSSSTTTSPTSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGII 78
           S++ +T++P S +P+ P+    PT       + S R     ++       +S++      
Sbjct: 58  SATKSTSTPLSQSPNFPSLCSLPTSKSELASNFSGRRSTRFVSKFHFGRPKSSMTTRHSA 117

Query: 79  PTPDLVHEVLQLSYDSPS--------------------------------SAVDFFRWA- 105
              +++H+VLQ   D  S                                 A+  F +A 
Sbjct: 118 IAEEVLHQVLQFGKDDASLDNILLNFESKLCGSEDYTFLLRELGNRGECWKAIRCFDFAL 177

Query: 106 ---GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAG 161
              GR       A + M+  LG+ G+ E           +G   ++  F+++  +Y  +G
Sbjct: 178 VREGRKNERGKLA-SAMISTLGRLGKVELAKGVFETALSEGYGNTVFAFSALISAYGKSG 236

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSF 220
            +DEA+  F+ M + G++ ++V  N+++ A  +   +  R +E F   ++  V PD  ++
Sbjct: 237 YFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITY 296

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
             LL    + G  E A   F EM++R     + V  Y T L  + +G Q+D A + +  M
Sbjct: 297 NSLLAVCSRGGLWEAARNLFNEMIDR--GIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEM 354

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
            G+   P +  +S   D   K      A+ L++ M  +G  L  + + YN ++ +     
Sbjct: 355 PGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGL--DRVSYNTLLSIYAKLG 412

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
             ++  +   +M   G   D +TYN + +   K  + +EV + F EM K+   P  L  +
Sbjct: 413 RFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYS 472

Query: 401 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           T I +       E A+E++    + G+       +EL+  L   G +       +EM   
Sbjct: 473 TLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVDSAVLLLDEMTKE 532

Query: 461 RILIYEVTMHKLKKAF 476
            I    VT + +  AF
Sbjct: 533 GIRPNVVTYNSIIDAF 548



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 1/141 (0%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++D  GK G+F ++    + MK+D V  +L T++++ D Y     Y+EA+  F    
Sbjct: 436 YNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFK 495

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G++ DVV  + L++A+C+     S  L      K+ + P+  ++  +++ + +    E
Sbjct: 496 QAGLKADVVLYSELINALCKNGLVDSAVLLLDEMTKEGIRPNVVTYNSIIDAFGRSTTAE 555

Query: 235 EANKTFGEMVERFEWNPEHVL 255
                 G   ER   +P  +L
Sbjct: 556 FLVDGVGASNERQSESPSFML 576



 Score = 45.1 bits (105), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 81/196 (41%), Gaps = 9/196 (4%)

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
           K  S  +  L +L     A  +++  +  G+     +  ++A+I     +   D   + F
Sbjct: 188 KLASAMISTLGRLGKVELAKGVFETALSEGYG--NTVFAFSALISAYGKSGYFDEAIKVF 245

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKN----KRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
           + M   G  P+ +TYN + +   K     KRV E+   F EM++N  QP  +   + + +
Sbjct: 246 ESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEI---FEEMLRNGVQPDRITYNSLLAV 302

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 465
                  E A  ++N +++ GI     + N LL  +   G++        EM  ++IL  
Sbjct: 303 CSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPN 362

Query: 466 EVTMHKLKKAFYNESR 481
            VT   +   +    R
Sbjct: 363 VVTYSTMADGYAKAGR 378


>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
 gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
          Length = 649

 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 168/370 (45%), Gaps = 16/370 (4%)

Query: 98  AVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMK-----EDGVLSLPTFA 151
           A+ F++    RG      +++ ++ +    G+ +     +R MK      DGV+    + 
Sbjct: 281 AMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVI----YT 336

Query: 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK- 210
            +   +C AG   EA+   D M   G   DVV  N+LL+ +C+Q ++   A E LN +K 
Sbjct: 337 MVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQ-HRLLDAEELLNEMKE 395

Query: 211 KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270
           + V PD  +F  L+ G+ ++GN E+A + F  ++ +    P+ V+AY + +  + R   +
Sbjct: 396 RGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQ-RLRPD-VVAYNSLIDGMCRKGDL 453

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYN 330
            +A +    M     FP    +S  +D   +      A    D MV  G NL PN++ YN
Sbjct: 454 AKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKG-NL-PNIMTYN 511

Query: 331 AVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 390
           ++I   C + +V    +F  +M+     PD +T+N +    IK + +H     F+ M K 
Sbjct: 512 SIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKE 571

Query: 391 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 450
             QP  +     I    +    E A  ++  +  +GI P   +   L+ G    G   + 
Sbjct: 572 MVQPDAVTYNMIINGFSEQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTAGNSKEA 631

Query: 451 RRFAEEMLNR 460
            +  +EM++R
Sbjct: 632 FQLHDEMMHR 641



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/406 (21%), Positives = 174/406 (42%), Gaps = 42/406 (10%)

Query: 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMS 169
           ++ Y  N+MV    K+  F++    +  M++  V   + T   + D+   AG  D A+  
Sbjct: 155 VNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIAL 214

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWE 228
            D M+  G++  +V  NS+L  +C+   +  +A E    + +  V PD  SF IL+ G+ 
Sbjct: 215 VDSMANKGLKPGIVTFNSVLKGLCKHR-RFDKAKEVFRAMDQCSVAPDVRSFNILIGGFC 273

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           + G VEEA K + EM +R    P+ V+++   +       ++D A  +LR MKG    P 
Sbjct: 274 RVGEVEEAMKFYKEMQQR-GVTPD-VVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPD 331

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN---------- 338
              ++  +    +    + A+++ D MVG+G   +P+++ YN ++  LC           
Sbjct: 332 GVIYTMVIGGFCRAGSMSEALRVRDEMVGLG--CLPDVVTYNTLLNGLCKQHRLLDAEEL 389

Query: 339 -------------------------NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 373
                                    + + +   + FD ++     PD + YN + + + +
Sbjct: 390 LNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCR 449

Query: 374 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 433
              + +  + + +M   E  P  +  +  I    +  + E A    + ++  G LP   +
Sbjct: 450 KGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMT 509

Query: 434 ANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 479
            N ++ G    G +   ++F ++M+   IL   +T + L   +  E
Sbjct: 510 YNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKE 555



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 143/331 (43%), Gaps = 4/331 (1%)

Query: 138 VMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           V+  D  ++  T   +  SYC + ++D+A      M    V  DVV  N L+ A  R  +
Sbjct: 148 VLSSDSEVNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGD 207

Query: 198 QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
             +      +   K + P   +F  +L+G  K    ++A + F  M ++    P+ V ++
Sbjct: 208 VDAAIALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAM-DQCSVAPD-VRSF 265

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317
              +    R  +V+EA+KF + M+     P +  FS  + +        HA      M G
Sbjct: 266 NILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKG 325

Query: 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
           +G  L+P+ ++Y  VIG  C    +    R  D+MV  G  PD +TYN +   L K  R+
Sbjct: 326 LG--LVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRL 383

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 437
            + E+  +EM +    P      T I         E A+++++ +L   + P   + N L
Sbjct: 384 LDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSL 443

Query: 438 LVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 468
           + G+   G L+      ++M  R I    VT
Sbjct: 444 IDGMCRKGDLAKANELWDDMHAREIFPNHVT 474


>gi|449457341|ref|XP_004146407.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial-like [Cucumis sativus]
 gi|449523938|ref|XP_004168980.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial-like [Cucumis sativus]
          Length = 506

 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 113/468 (24%), Positives = 199/468 (42%), Gaps = 32/468 (6%)

Query: 50  SSSARIICEILAHASS--DDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR 107
           S  A ++ +IL H  +    +ES+L    I  +  L+ + L         A+ FF +A  
Sbjct: 35  SKDADLVSQILLHHHNPFHSMESSLQLHSISFSSHLLDQTLLRLTHHSKIALSFFDYANS 94

Query: 108 --GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDE 165
                +S  ++N+++D+L K  +F+  W+ +  M   G     TF  +      +G+  +
Sbjct: 95  LPSNPISTTSYNILLDILAKVRQFDAAWHLILQMDHKGT---DTFLLLIRRLISSGRTRQ 151

Query: 166 AVMSFDVMSMHGVEQDVVAVNS---LLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
           A+ +FD   + G+  + V ++    LL  +C+       A+E  N+ K+    D   + I
Sbjct: 152 AIRAFD--DIEGLTGNKVGIDDFCYLLDVLCKY-GYVKVAVEVFNKRKEEFGVDVKIYTI 208

Query: 223 LLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRG----------KQVD 271
           L+ GW K G  E A +   +MVER  E N   V+ Y   L  + R           K + 
Sbjct: 209 LIYGWCKIGRFEMAERFLKDMVERGIEPN---VVTYNVLLNGVCRRASLHPEGRFEKTIR 265

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA 331
            A K    M+     P +  FS  L +  + +    ++     M  +G +  P +  Y +
Sbjct: 266 HAEKVFDEMRKRGIEPDVTSFSIVLHVYSRAHKPELSLDKLKQMKELGIS--PTVATYTS 323

Query: 332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN- 390
           VI  LC+   +++     ++MV  G  P   TYN  F+     K      + + +M ++ 
Sbjct: 324 VIKCLCSCGRLEDGENLIEEMVRSGISPSPTTYNCFFKEYRGRKDGAGALRLYKKMREDC 383

Query: 391 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 450
              P+       + + L+ D+ E   E+WN + E+G+ P   S   ++ GL    R S+ 
Sbjct: 384 LCAPSLHTYNILLALFLNLDKKETLKELWNDMKESGVGPDLDSYTTIIHGLCEKQRWSEA 443

Query: 451 RRFAEEMLNRRILIYEVTMHKLKKAFYNES--RSMRDIFDSLERRCKT 496
            +F  EM+ R  L  +VT   L +        R+ R +   LE   KT
Sbjct: 444 CQFFVEMIERGFLPQKVTFEMLYRGLIQSDMLRTWRRLKKKLEEESKT 491


>gi|449444202|ref|XP_004139864.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15200-like [Cucumis sativus]
 gi|449502917|ref|XP_004161779.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15200-like [Cucumis sativus]
          Length = 532

 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 104/411 (25%), Positives = 189/411 (45%), Gaps = 17/411 (4%)

Query: 62  HASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA-GRG---QRLSPYA-- 115
           H   +DIE AL+   ++ T D V +VL+      + A  FF W   RG   ++ +P +  
Sbjct: 104 HKPVEDIERALSLCDLVLTDDFVLKVLRRHRSDWNPAFIFFNWVLKRGTNEEKFTPGSVI 163

Query: 116 WNLMVDVLGKNGRFEQMWNA-VRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++ +LGK  RFE++    V + K   +++  T++ + + Y  A K +EA+  F    
Sbjct: 164 YNEILVILGKFRRFEEVDKVLVEMSKRKELVNEETYSVLLNRYAAAHKVEEAISIFYRRQ 223

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G+E +++A  SLL  +CR ++  +    F ++  + V  D  +  I+L GW   GNV 
Sbjct: 224 EFGLEMNLIAFQSLLMWLCRYKHVEAAETLFHSKKHEFVT-DIKTSNIILNGWCVLGNVH 282

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           EA + + E++E  +  P+ +  Y T + +L +  ++  ALK  R M        +   + 
Sbjct: 283 EAKRFWREIIES-KCEPD-IYTYGTLINSLTKKGKLGTALKLFRAMWERGLTTDVVICNC 340

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
            +D L        A++++  M   G     N+  YN +I  LC    ++ V    ++M  
Sbjct: 341 IIDALCFKKRIPEALEIFKEMNERG--CAANVATYNTLIKHLCKIRRMEKVNELLNEMEE 398

Query: 355 H--GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
                +P+S+T+  +   +   +   EV   F  M ++  + T       + + +D D  
Sbjct: 399 RKGSCWPNSVTFIYLLGSV---RGPEEVPVLFQRMERSGCKMTSDIYNLILRLYMDWDIQ 455

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
           E     WN + E G+ P   S   ++ GL   GR  D  R+  EM  + I+
Sbjct: 456 ERVKSTWNEMKEMGLGPDRRSYTIMIHGLYEKGRTKDGLRYFNEMTLKGIM 506


>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 1219

 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 91/371 (24%), Positives = 167/371 (45%), Gaps = 9/371 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG   +   ++ ++  L K    ++    +  M ++GV+ +  T+ SI   YC +G+  E
Sbjct: 228 RGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKE 287

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A+     M   GVE DVV  NSL+  +C+    T     F +  K+ + P+  ++  LL+
Sbjct: 288 AIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQ 347

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+  +G + E +     MV R   +P H + +   +    +  +VD+A+     M+ +  
Sbjct: 348 GYATKGALVEMHGLLDLMV-RNGIHPNHYV-FSILICAYAKQGKVDQAMLVFSKMRQQGL 405

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P    +   + IL K      A++ ++ M  I   L P  I+YN++I  LC  D  D  
Sbjct: 406 NPDTVTYGTVIGILCKSGRVEDAMRYFEQM--IDERLSPGNIVYNSLIHSLCIFDKWDKA 463

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
                +M+  G   D++ +N I +   K  RV E EK F  M++   +P  +  +T I  
Sbjct: 464 KELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDG 523

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNRR 461
              A + + A ++   ++  G+ P   + N L+ G   + R+ D      EM    ++  
Sbjct: 524 YCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPD 583

Query: 462 ILIYEVTMHKL 472
           I+ Y + +  L
Sbjct: 584 IITYNIILQGL 594



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 89/397 (22%), Positives = 173/397 (43%), Gaps = 10/397 (2%)

Query: 50  SSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQ--LSYDSPSSAVDFFR-WAG 106
           SS    +C+  A   + ++ +++   G++P     + ++    S   P  A+ F +    
Sbjct: 238 SSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHS 297

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
            G       +N ++D L KNGR  +       M + G+   + T+ ++   Y   G   E
Sbjct: 298 DGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVE 357

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
                D+M  +G+  +    + L+ A  +Q       L F    ++ ++PD  ++  ++ 
Sbjct: 358 MHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIG 417

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF-LRVMKGEN 284
              K G VE+A + F +M++    +P +++ Y + + +L    + D+A +  L ++    
Sbjct: 418 ILCKSGRVEDAMRYFEQMIDE-RLSPGNIV-YNSLIHSLCIFDKWDKAKELILEMLDRGI 475

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
           C  T+ FF++ +D   K      + +L+D+MV IG    P++I Y+ +I   C    +D 
Sbjct: 476 CLDTI-FFNSIIDSHCKEGRVIESEKLFDLMVRIGVK--PDIITYSTLIDGYCLAGKMDE 532

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
             +    MV  G  PD +TYN +     K  R+ +    F EM  +   P  +     + 
Sbjct: 533 ATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQ 592

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 441
            L        A E++  I E+G     ++ N +L GL
Sbjct: 593 GLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGL 629



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 94/413 (22%), Positives = 171/413 (41%), Gaps = 53/413 (12%)

Query: 107 RGQRLSPYAWNLMVDVLGKNG------RFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGA 160
           RG+  S Y  N  +  + ++       R+ +M    R   ++   +L T+  +  S C A
Sbjct: 48  RGRGASIYGLNCALADVARHSPAAAVSRYNRM---ARAGADEVTPNLCTYGILIGSCCCA 104

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF-LNRVKKI-VDPDGD 218
           G+ D    +   +   G   D +A   LL  +C  + +TS A++  L R+ ++   P+  
Sbjct: 105 GRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLC-ADKRTSDAMDIVLRRMTQLGCIPNVF 163

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           S+ ILL+G   E   +EA +    M +     P  V++Y T +    +   +D+A     
Sbjct: 164 SYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYH 223

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            M      P +  +S+ +  L K      A+++   MV  G  +MPN   YN+++   C+
Sbjct: 224 EMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNG--VMPNCRTYNSIVHGYCS 281

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
           +        F  +M   G  PD +TYN + + L KN R  E  K F  M K   +P    
Sbjct: 282 SGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITT 341

Query: 399 CATAIT------------MLLD---------------------ADEPEI--AIEIWNYIL 423
             T +              LLD                     A + ++  A+ +++ + 
Sbjct: 342 YGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMR 401

Query: 424 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVTMHKL 472
           + G+ P   +   ++  L   GR+ D  R+ E+M++ R+    ++Y   +H L
Sbjct: 402 QQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSL 454



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 144/322 (44%), Gaps = 17/322 (5%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSF 170
           +++N+++  L    R ++    +++M +DG    P   ++ ++ + +   G  D+A  ++
Sbjct: 163 FSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTY 222

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEK 229
             M   G+  +VV  +S+++A+C+ +    +A+E L   VK  V P+  ++  ++ G+  
Sbjct: 223 HEMLDRGILPNVVTYSSIIAALCKAQ-AMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCS 281

Query: 230 EGNVEEA----NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
            G  +EA     K   + VE     P+ V+ Y + +  L +  +  EA K    M     
Sbjct: 282 SGQPKEAIGFLKKMHSDGVE-----PD-VVTYNSLMDYLCKNGRCTEARKMFDSMTKRGL 335

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P +  +   L              L D+MV  G +  PN  +++ +I        VD  
Sbjct: 336 KPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIH--PNHYVFSILICAYAKQGKVDQA 393

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
              F +M   G  PD++TY  +   L K+ RV +  ++F +MI     P  +   + I  
Sbjct: 394 MLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHS 453

Query: 406 LLDADEPEIAIEIWNYILENGI 427
           L   D+ + A E+   +L+ GI
Sbjct: 454 LCIFDKWDKAKELILEMLDRGI 475



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 141/316 (44%), Gaps = 18/316 (5%)

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI----VDPDGDS 219
           ++A   FD +   G    +  +N  L+ + R  +  + A+   NR+ +     V P+  +
Sbjct: 36  EDARHVFDELLRRGRGASIYGLNCALADVAR--HSPAAAVSRYNRMARAGADEVTPNLCT 93

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKF-L 277
           + IL+      G ++      G ++++ F  +    +A+   L  L   K+  +A+   L
Sbjct: 94  YGILIGSCCCAGRLDLGFAALGNVIKKGFRVD---AIAFTPLLKGLCADKRTSDAMDIVL 150

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337
           R M    C P +  ++  L  L   N S  A++L  +M   G +  P+++ Y  VI    
Sbjct: 151 RRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFF 210

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
              D+D  +  + +M+  G  P+ +TY+ I   L K + + +  +    M+KN   P   
Sbjct: 211 KEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMP--- 267

Query: 398 NCATAITML---LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 454
           NC T  +++     + +P+ AI     +  +G+ P   + N L+  L   GR ++ R+  
Sbjct: 268 NCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMF 327

Query: 455 EEMLNRRILIYEVTMH 470
           + M  +R L  E+T +
Sbjct: 328 DSM-TKRGLKPEITTY 342



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 134/296 (45%), Gaps = 17/296 (5%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKE--DGVLSLP--TFASIFDSYCGA 160
           R Q L+P    +  ++ +L K+GR E   +A+R  ++  D  LS     + S+  S C  
Sbjct: 401 RQQGLNPDTVTYGTVIGILCKSGRVE---DAMRYFEQMIDERLSPGNIVYNSLIHSLCIF 457

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN--QTSRALEFLNRVKKIVDPDGD 218
            K+D+A      M   G+  D +  NS++ + C++    ++ +  + + R+   V PD  
Sbjct: 458 DKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIG--VKPDII 515

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           +++ L++G+   G ++EA K    MV      P+ V  Y T +    +  ++++AL   R
Sbjct: 516 TYSTLIDGYCLAGKMDEATKLLASMVS-VGMKPDCV-TYNTLINGYCKISRMEDALVLFR 573

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            M+     P +  ++  L  L +   +  A +L+  +   G  L   L  YN ++  LC 
Sbjct: 574 EMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQL--ELSTYNIILHGLCK 631

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
           N+  D   R F  +       ++ T+N++   L+K  R  E +  F  +  N   P
Sbjct: 632 NNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVP 687


>gi|242041853|ref|XP_002468321.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
 gi|241922175|gb|EER95319.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
          Length = 794

 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 98/418 (23%), Positives = 181/418 (43%), Gaps = 21/418 (5%)

Query: 94  SPSSAVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTF 150
           SP +++D FR +    RL P  Y +NL+V      G      + +  M+  G+   + T+
Sbjct: 190 SPQASLDVFR-SLIALRLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDVVTY 248

Query: 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE--NQTSRALEFLNR 208
            ++  ++C  G   EA      M   G+       N+L+SA  R     Q +  +E +  
Sbjct: 249 NTLLKAHCRKGMLGEARTLLARMKKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTA 308

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
                +PD  ++ +L  G  + G V+EA K   EM      +P+ V+ Y T +    + +
Sbjct: 309 FG--FEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEHLSIVSPD-VVTYNTLVDACFKYQ 365

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           +  +AL  L  M+ +    +L   +  +  L +      A+    +M   G  L P++I 
Sbjct: 366 RSSDALNLLEEMRDKGVKSSLVTHNIVVKGLCREGQLEEALGRLKMMTEEG--LAPDVIT 423

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           YN +I   C   +V   F   D+MV  G   D+ T N +   L K KR  E E+      
Sbjct: 424 YNTLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRSPP 483

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
           +  + P  ++  T +      ++PE A+ +W+ + +  + P   + N L+ GL  +G+L+
Sbjct: 484 QRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNTLIKGLCTIGKLT 543

Query: 449 DVRRFAEEMLNRRIL----IYEVTMHK------LKKAFYNESRSMRDIFDSLERRCKT 496
           +      E++ + ++     Y + +H       L+KAF   ++ + + F      C T
Sbjct: 544 EAIDKLNELMKKGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMLENYFKPDVVTCNT 601



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 103/425 (24%), Positives = 167/425 (39%), Gaps = 49/425 (11%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N +V    + G  +Q  N V  M   G    L T+  +    C AGK DEA    D M 
Sbjct: 283 YNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEME 342

Query: 175 -MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
            +  V  DVV  N+L+ A C +  ++S AL  L  ++ K V     +  I+++G  +EG 
Sbjct: 343 HLSIVSPDVVTYNTLVDA-CFKYQRSSDALNLLEEMRDKGVKSSLVTHNIVVKGLCREGQ 401

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETF-------------------------------- 260
           +EEA      M E  E     V+ Y T                                 
Sbjct: 402 LEEALGRLKMMTE--EGLAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTL 459

Query: 261 ---LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317
              L  L + K+ +EA + LR        P    +   +    K N    A+ LWD M  
Sbjct: 460 NTLLYNLCKEKRYEEAEELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSK 519

Query: 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
               L P++  YN +I  LC    +       ++++  G  PD  TYN+I     K   +
Sbjct: 520 --RKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEGDL 577

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 437
            +  +F ++M++N ++P  + C T +  L    + E AI+++    E G      + N L
Sbjct: 578 EKAFQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKAIKLFESWAEKGKKVDVITYNTL 637

Query: 438 LVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVTMHKLKKAFYNESRSMRDIFDSLERR 493
           +  L   G +     F  +M  R +      Y V +  L +A    S   +++   L+  
Sbjct: 638 IQALCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEA--GRSEEAQNMLHKLDES 695

Query: 494 CKTSQ 498
            K S+
Sbjct: 696 GKLSE 700



 Score = 42.4 bits (98), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 44/206 (21%), Positives = 78/206 (37%), Gaps = 2/206 (0%)

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346
           P+L+  +  L  L +   ++    L      I   L PN   +N ++   C+   + +  
Sbjct: 171 PSLQAANAVLSALARSPSTSPQASLDVFRSLIALRLHPNHYTFNLLVHTHCSKGTLADAL 230

Query: 347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406
                M   G  PD +TYN + +   +   + E       M K    PT     T ++  
Sbjct: 231 STLSTMQGFGLSPDVVTYNTLLKAHCRKGMLGEARTLLARMKKEGIAPTRATYNTLVSAY 290

Query: 407 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYE 466
                 + A  +   +   G  P   + N L  GL   G++ +  +  +EM +  I+  +
Sbjct: 291 ARLGWIKQATNVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEHLSIVSPD 350

Query: 467 -VTMHKLKKAFYNESRSMRDIFDSLE 491
            VT + L  A +   RS  D  + LE
Sbjct: 351 VVTYNTLVDACFKYQRS-SDALNLLE 375


>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
 gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
          Length = 375

 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 137/320 (42%), Gaps = 14/320 (4%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+  + +  C  G+ DEA+   + M  +G + +V+  N +L ++C               
Sbjct: 53  TYNVLVNGMCKEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEM 112

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH-----VLAYETFLIT 263
           V+K   P   +F IL+    ++G         G  ++  E  P H      L+Y   L  
Sbjct: 113 VRKGCSPSVVTFNILINFLCRKG-------LLGRAIDILEKMPTHGCTPNSLSYNPLLHG 165

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLM 323
             + K++D A+++L +M    C+P +  ++  L  L K      AV+L + +   G +  
Sbjct: 166 FCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCS-- 223

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           P LI YN VI  L      D       +M   G  PD +TY+ +   L +  +V E  KF
Sbjct: 224 PVLITYNTVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKF 283

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
           FH++     +P      + +  L  A + + AI+   Y++  G  P E S   L+ G+ N
Sbjct: 284 FHDVEGFGVKPNAFTYNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIAN 343

Query: 444 LGRLSDVRRFAEEMLNRRIL 463
            G   +      E+ +R ++
Sbjct: 344 EGLAKEALELLNELCSRGVV 363



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 142/333 (42%), Gaps = 6/333 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+  + ++ C      +A+   D M   G + DVV  N L++ +C+ E +   A++FLN 
Sbjct: 18  TYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCK-EGRLDEAIKFLNS 76

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           +      P+  +  I+L      G   +A K   EMV R   +P  V+ +   +  L R 
Sbjct: 77  MPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMV-RKGCSPS-VVTFNILINFLCRK 134

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
             +  A+  L  M    C P    ++  L    K      A+Q  +IMV  G    P+++
Sbjct: 135 GLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRG--CYPDIV 192

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            YN ++  LC +  VD      +Q+   G  P  +TYN + + L K  +  +  +  HEM
Sbjct: 193 TYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEM 252

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
                +P  +  ++ I  L    + E AI+ ++ +   G+ P   + N ++ GL    + 
Sbjct: 253 RGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLCKAQQT 312

Query: 448 SDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 480
                F   M+++     EV+   L +   NE 
Sbjct: 313 DRAIDFLAYMISKGCKPTEVSYTILIEGIANEG 345



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 121/280 (43%), Gaps = 5/280 (1%)

Query: 203 LEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFL 261
           +E L+R ++K   PD  ++ IL+E    E  V +A K   EM  R    P+ V+ Y   +
Sbjct: 1   MEVLDRQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSR-GCKPD-VVTYNVLV 58

Query: 262 ITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFN 321
             + +  ++DEA+KFL  M      P +   +  L  +        A +L   MV  G +
Sbjct: 59  NGMCKEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCS 118

Query: 322 LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 381
             P+++ +N +I  LC    +       ++M  HG  P+SL+YN +     K K++    
Sbjct: 119 --PSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAI 176

Query: 382 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 441
           ++   M+     P  +   T +T L    + + A+E+ N +   G  P+  + N ++ GL
Sbjct: 177 QYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGL 236

Query: 442 RNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
             +G+         EM  + +    +T   L      E +
Sbjct: 237 SKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGK 276



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 138/327 (42%), Gaps = 43/327 (13%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
           N+++  +   GR+      +  M   G   S+ TF  + +  C  G    A+   + M  
Sbjct: 90  NIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPT 149

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEKEGNVE 234
           HG   + ++ N LL   C+ E +  RA+++L   V +   PD  ++  +L    K+G   
Sbjct: 150 HGCTPNSLSYNPLLHGFCK-EKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDG--- 205

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
                                             +VD A++ L  +  + C P L  ++ 
Sbjct: 206 ----------------------------------KVDAAVELLNQLSSKGCSPVLITYNT 231

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
            +D L K+  +  AV+L   M G G  L P++I Y+++I  L     V+   +FF  +  
Sbjct: 232 VIDGLSKVGKTDQAVELLHEMRGKG--LKPDVITYSSLIAGLSREGKVEEAIKFFHDVEG 289

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 414
            G  P++ TYN I   L K ++      F   MI    +PT ++    I  + +    + 
Sbjct: 290 FGVKPNAFTYNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIANEGLAKE 349

Query: 415 AIEIWNYILENGILPLEASANELLVGL 441
           A+E+ N +   G++  ++SA +++V L
Sbjct: 350 ALELLNELCSRGVVK-KSSAEQVVVRL 375



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 72/183 (39%), Gaps = 38/183 (20%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDE 165
           RG       +N M+  L K+G+ +     +  +   G    L T+ ++ D     GK D+
Sbjct: 185 RGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQ 244

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           AV     M   G++ DV+  +SL++                                   
Sbjct: 245 AVELLHEMRGKGLKPDVITYSSLIA----------------------------------- 269

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G  +EG VEEA K F + VE F   P +   Y + +  L + +Q D A+ FL  M  + C
Sbjct: 270 GLSREGKVEEAIKFFHD-VEGFGVKP-NAFTYNSIMFGLCKAQQTDRAIDFLAYMISKGC 327

Query: 286 FPT 288
            PT
Sbjct: 328 KPT 330


>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900 [Vitis vinifera]
          Length = 900

 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 96/394 (24%), Positives = 175/394 (44%), Gaps = 18/394 (4%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRV---MKEDGVLS-LPTFASIFDSYC 158
           R    G  LS   +N+ +  L KN R   +W AV +   +   G+ + + T+ ++    C
Sbjct: 240 RMESSGCDLSVATYNVFIRGLCKNQR---VWEAVEIKNLLSYKGLRADVGTYCTLVLGLC 296

Query: 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDG 217
              +++      + M   G      AV++L+  + R++     A + +N+VKK  V P  
Sbjct: 297 KVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGL-RKKGNIGSAFDLVNKVKKFGVAPSL 355

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
             +  L+    K+G ++EA   F  M  +  + P  V  Y   + +  +  ++D AL FL
Sbjct: 356 FVYNALINSMCKDGKLDEAESLFNNMGHKGLF-PNDV-TYSILIDSFCKRGKLDVALHFL 413

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337
             M       T+  +S+ +    KL     A  L+D M+  G  L PN+++Y ++I   C
Sbjct: 414 GKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANG--LKPNVVIYTSLISGYC 471

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
              ++ N FR + +M   G  P++ T+  +   L    R+ E  K F EM+  EW   P 
Sbjct: 472 KEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMV--EWNVIPN 529

Query: 398 NCATAITMLLDADEPEI--AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 455
                + +     E     A E+ + ++E G++P   +   L+ GL + GR+S+ R F  
Sbjct: 530 EVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMN 589

Query: 456 EMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDS 489
           ++   +  + E+    L   +  E R + D  D+
Sbjct: 590 DLQGEQQKLNEMCFSALLHGYCKEGR-LDDALDA 622



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 74/347 (21%), Positives = 145/347 (41%), Gaps = 9/347 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +++++D   K G+ +   + +  M E G+  ++  ++S+   +C  GK   A   FD M
Sbjct: 392 TYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEM 451

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
             +G++ +VV   SL+S  C++    +    +     K + P+  +F  L+ G      +
Sbjct: 452 IANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRM 511

Query: 234 EEANKTFGEMVERFEWN--PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            EANK FGEMVE   WN  P  V  Y   +    +      A + L  M  +   P    
Sbjct: 512 AEANKLFGEMVE---WNVIPNEV-TYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYT 567

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           +   +  L      + A +  + + G    L  N + ++A++   C    +D+      +
Sbjct: 568 YRPLISGLCSTGRVSEAREFMNDLQGEQQKL--NEMCFSALLHGYCKEGRLDDALDACRE 625

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M+  G   D + Y+++   +++ +    +     +M     +P  +   T I     A  
Sbjct: 626 MLGRGVAMDLVCYSVLIYGILRQQDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGN 685

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
            ++A  +W+ ++  G LP   +   L+ GL  +G +        EML
Sbjct: 686 LKMAFGLWDIMVSEGCLPNVVTYTALINGLCKIGLMDKAELLCREML 732



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 142/332 (42%), Gaps = 14/332 (4%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMK-EDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +  ++  L   GR  +    +  ++ E   L+   F+++   YC  G+ D+A+ +   
Sbjct: 566 YTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEMCFSALLHGYCKEGRLDDALDACRE 625

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD----PDGDSFAILLEGWE 228
           M   GV  D+V  + L+  I RQ+++ S     ++ +K++ D    PD   +  +++   
Sbjct: 626 MLGRGVAMDLVCYSVLIYGILRQQDRRS----IIDLLKQMHDQGLRPDNVLYTTMIDANA 681

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           K GN++ A   +  MV   E    +V+ Y   +  L +   +D+A    R M   N  P 
Sbjct: 682 KAGNLKMAFGLWDIMVS--EGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPN 739

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
              ++  LD L    +   A+QL D+++  GF  + N + YN +I   C    +      
Sbjct: 740 QNTYACFLDYLTSEGNIEKAIQLHDVLLE-GF--LANTVTYNILIRGFCKLGRIQEAAEV 796

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
              M+  G  PD ++Y+ I     +   + E  K +  M+     P  +     I     
Sbjct: 797 LVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCV 856

Query: 409 ADEPEIAIEIWNYILENGILPLEASANELLVG 440
             E   A E+ + ++  G+ P  A+ N L+ G
Sbjct: 857 TGELTKAFELRDDMMRRGVKPNRATYNSLIHG 888



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 87/396 (21%), Positives = 159/396 (40%), Gaps = 18/396 (4%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           +    G+G   + Y +  ++  L    R  +       M E  V+ +  T+  + + +C 
Sbjct: 483 YHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCK 542

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD- 218
            G    A    D M   G+  D      L+S +C    + S A EF+N ++       + 
Sbjct: 543 EGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLC-STGRVSEAREFMNDLQGEQQKLNEM 601

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
            F+ LL G+ KEG +++A     EM+ R       ++ Y   +  ++R +     +  L+
Sbjct: 602 CFSALLHGYCKEGRLDDALDACREMLGR--GVAMDLVCYSVLIYGILRQQDRRSIIDLLK 659

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            M  +   P    ++  +D   K  +   A  LWDIMV  G   +PN++ Y A+I  LC 
Sbjct: 660 QMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEG--CLPNVVTYTALINGLCK 717

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
              +D       +M+   + P+  TY    + L     + +  +  H+++   +    + 
Sbjct: 718 IGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQL-HDVLLEGFLANTVT 776

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
               I         + A E+   ++++GI P   S + ++      G L +  +  E ML
Sbjct: 777 YNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESML 836

Query: 459 NRRI---------LIYEVTM-HKLKKAFYNESRSMR 484
           NR +         LIY   +  +L KAF      MR
Sbjct: 837 NRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMR 872



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 80/407 (19%), Positives = 168/407 (41%), Gaps = 42/407 (10%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            ++L++    +N R       VR+M + G+L  + T + + +      ++  A+  FD +
Sbjct: 147 GFDLLIQTYVQNRRELDGLVVVRLMMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEI 206

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGN 232
              G+  DV    +++ ++C  ++   RA E + R++    D    ++ + + G  K   
Sbjct: 207 VSSGLRPDVYVYTAVVRSLCELKDFI-RAREVIGRMESSGCDLSVATYNVFIRGLCKNQR 265

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           V EA +   + +  ++     V  Y T ++ L + ++ +   + +  M      P+    
Sbjct: 266 VWEAVEI--KNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAV 323

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           SN +D L K  +   A  L + +    F + P+L +YNA+I  +C +  +D     F+ M
Sbjct: 324 SNLVDGLRKKGNIGSAFDLVNKVKK--FGVAPSLFVYNALINSMCKDGKLDEAESLFNNM 381

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRV----------------------------------- 377
              G FP+ +TY+++ +   K  ++                                   
Sbjct: 382 GHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKL 441

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 437
              +  F EMI N  +P  +   + I+      E   A  +++ +   GI P   +   L
Sbjct: 442 RAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTAL 501

Query: 438 LVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMR 484
           + GL +  R+++  +   EM+   ++  EVT + L +    E  ++R
Sbjct: 502 ISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVR 548



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 103/238 (43%), Gaps = 11/238 (4%)

Query: 139 MKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198
           ++ D VL    + ++ D+   AG    A   +D+M   G   +VV   +L++ +C+    
Sbjct: 666 LRPDNVL----YTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALINGLCKIGLM 721

Query: 199 TSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYE 258
               L     +     P+ +++A  L+    EGN+E+A +    ++E F  N    + Y 
Sbjct: 722 DKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLEGFLAN---TVTYN 778

Query: 259 TFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI 318
             +    +  ++ EA + L  M      P    +S  +    +  D   A++LW+ M+  
Sbjct: 779 ILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNR 838

Query: 319 GFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFE--CLIKN 374
           G N  P+ + YN +I   C   ++   F   D M+  G  P+  TYN +    CL+ +
Sbjct: 839 GVN--PDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHGTCLMSS 894



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 91/201 (45%), Gaps = 2/201 (0%)

Query: 248 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 307
           + N    L ++  + T ++ ++  + L  +R+M      P ++  S  L+ L+++     
Sbjct: 139 KCNFSTTLGFDLLIQTYVQNRRELDGLVVVRLMMDCGILPQIRTLSGVLNGLIRIRQFRM 198

Query: 308 AVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMI 367
           A+ L+D +V  G  L P++ +Y AV+  LC   D         +M   G      TYN+ 
Sbjct: 199 ALHLFDEIVSSG--LRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVF 256

Query: 368 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 427
              L KN+RV E  +  + +     +       T +  L   +E E   E+ N ++E G 
Sbjct: 257 IRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGF 316

Query: 428 LPLEASANELLVGLRNLGRLS 448
           +P EA+ + L+ GLR  G + 
Sbjct: 317 VPSEAAVSNLVDGLRKKGNIG 337


>gi|449518511|ref|XP_004166285.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Cucumis sativus]
          Length = 868

 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 109/496 (21%), Positives = 204/496 (41%), Gaps = 43/496 (8%)

Query: 19  SSSSTTTSPTSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGII 78
           S++ +T++P S +P+ P+    PT       + S R     ++       +S++      
Sbjct: 58  SATKSTSTPLSQSPNFPSLCSLPTSKSELASNFSGRRSTRFVSKFHFGRPKSSMTTRHSA 117

Query: 79  PTPDLVHEVLQLSYDSPS--------------------------------SAVDFFRWA- 105
              +++H+VLQ   D  S                                 A+  F +A 
Sbjct: 118 IAEEVLHQVLQFGKDDASLDNILLNFESKLCGSEDYTFLLRELGNRGECWKAIRCFDFAL 177

Query: 106 ---GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAG 161
              GR       A + M+  LG+ G+ E           +G   ++  F+++  +Y  +G
Sbjct: 178 VREGRKNERGKLA-SAMISTLGRLGKVELAKGVFETALSEGYGNTVFAFSALISAYGKSG 236

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSF 220
            +DEA+  F+ M + G++ ++V  N+++ A  +   +  R +E F   ++  V PD  ++
Sbjct: 237 YFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITY 296

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
             LL    + G  E A   F EM++R     + V  Y T L  + +G Q+D A + +  M
Sbjct: 297 NSLLAVCSRGGLWEAARNLFNEMIDR--GIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEM 354

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
            G+   P +  +S   D   K      A+ L++ M  +G  L  + + YN ++ +     
Sbjct: 355 PGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGL--DRVSYNTLLSIYAKLG 412

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
             ++  +   +M   G   D +TYN + +   K  + +EV + F EM K+   P  L  +
Sbjct: 413 RFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYS 472

Query: 401 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           T I +       E A+E++    + G+       +EL+  L   G +       +EM   
Sbjct: 473 TLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVDSAVLLLDEMTKE 532

Query: 461 RILIYEVTMHKLKKAF 476
            I    VT + +  AF
Sbjct: 533 GIRPNVVTYNSIIDAF 548



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 1/141 (0%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++D  GK G+F ++    + MK+D V  +L T++++ D Y     Y+EA+  F    
Sbjct: 436 YNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFK 495

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G++ DVV  + L++A+C+     S  L      K+ + P+  ++  +++ + +    E
Sbjct: 496 QAGLKADVVLYSELINALCKNGLVDSAVLLLDEMTKEGIRPNVVTYNSIIDAFGRSTTAE 555

Query: 235 EANKTFGEMVERFEWNPEHVL 255
                 G   ER   +P  +L
Sbjct: 556 FLVDGVGASNERQSESPTFML 576



 Score = 45.1 bits (105), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 81/196 (41%), Gaps = 9/196 (4%)

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
           K  S  +  L +L     A  +++  +  G+     +  ++A+I     +   D   + F
Sbjct: 188 KLASAMISTLGRLGKVELAKGVFETALSEGYG--NTVFAFSALISAYGKSGYFDEAIKVF 245

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKN----KRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
           + M   G  P+ +TYN + +   K     KRV E+   F EM++N  QP  +   + + +
Sbjct: 246 ESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEI---FEEMLRNGVQPDRITYNSLLAV 302

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 465
                  E A  ++N +++ GI     + N LL  +   G++        EM  ++IL  
Sbjct: 303 CSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPN 362

Query: 466 EVTMHKLKKAFYNESR 481
            VT   +   +    R
Sbjct: 363 VVTYSTMADGYAKAGR 378


>gi|225436259|ref|XP_002275952.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Vitis vinifera]
          Length = 566

 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 106/420 (25%), Positives = 182/420 (43%), Gaps = 19/420 (4%)

Query: 54  RIICEILAHASSDD--IESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQ 109
           R I +IL    S    ++  L   G+  + +LV EVL    +   +A  FF WA +  G 
Sbjct: 84  RRIVDILQEPGSSMSLVKHKLESCGVAASSELVVEVLSRVRNHWEAAFTFFLWAAKQPGY 143

Query: 110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED----GVLSLPTFASIFDSYCGAGKYDE 165
             S  A++ M+ +LGK  +F+  W  +  M+       +++  T + +   YC      +
Sbjct: 144 AHSLRAYHSMISILGKMRKFDTAWALIDEMRGGRTGTSLVTPHTLSIMIRRYCAVHDVGK 203

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN-QTSRALEFLNRVKKIVDPDGDSFAILL 224
           A+ +F           +    +LLSA+CR +N Q +  L F NR   +   D  SF I+L
Sbjct: 204 AINTFYAHKQFKFGVGIEEFQNLLSALCRYKNVQDAEQLLFCNR--NVFPFDTKSFNIIL 261

Query: 225 EGW-EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
            GW    G++ EA + + EM  R       V++Y + +    +   +++ LK    MK  
Sbjct: 262 NGWCNVIGSMREAERFWREMSNR--GIQRDVVSYSSIISCYSKVTNLNKVLKLFNQMKEM 319

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
              P  K ++  +  L K +    A+ L   M G G  + P+ + YN++I  L     ++
Sbjct: 320 EIAPDRKVYNAVVHALAKASFVKEALNLMKAMEGKG--IAPDSVTYNSLIKPLSRARKIN 377

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
                FD+M+  G  P   TY+  F  L   K   EV     +M +    P        I
Sbjct: 378 EAKEVFDEMLQRGLSPTIRTYHAFFRIL---KSGEEVFMLLEKMKETGCHPDKDTYIMLI 434

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
                  + +   ++W+ + ENG+ P  +S   L+ GL   G+L +  ++  EM  ++ L
Sbjct: 435 RRFCRWRQLDNVFKLWSEMSENGVGPDRSSYIVLIHGLFLNGKLEEAYKYYIEMKEKQFL 494


>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 92/387 (23%), Positives = 176/387 (45%), Gaps = 8/387 (2%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEA 166
           G  L+ Y  N+MV+ L K+ +FE +   +  M+  GV + + T+ ++ ++YC  G  +EA
Sbjct: 252 GIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEA 311

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLE 225
               +  S  G+E  ++  N++L  +C+   +  RA + L  + ++ + P+  ++  LL 
Sbjct: 312 FQLLNSFSSRGMEPGLLTYNAILYGLCKI-GKYDRAKDVLIEMLQLGLTPNAATYNTLLV 370

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
              +  N+ EA + F EM  R    P+ V ++ + +  L R   + +AL   R M+    
Sbjct: 371 EICRRDNILEAQEIFDEMSRRGVL-PDLV-SFSSLIGVLARNGHLYQALMHFREMERSGI 428

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P    ++  +D   +    + A+++ D M+  G     +++ YN  +  LC      + 
Sbjct: 429 VPDNVIYTILIDGFCRNGALSDALKMRDEMLARG--CFMDVVTYNTFLNGLCKKKMFADA 486

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
              F++MV  G  PD  T+  +     K+  + +    F  M++   +P  +   T I  
Sbjct: 487 DMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDG 546

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 465
              A E   A E+W+ ++   I+P   S   +L G  + G L +     ++ML + I   
Sbjct: 547 FCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPN 606

Query: 466 EVTMHKLKKAFYNESRSMRDIFDSLER 492
            VT + L K  Y  S  M   ++ L +
Sbjct: 607 LVTCNTLIKG-YCRSGDMPKAYEYLSK 632



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/376 (23%), Positives = 163/376 (43%), Gaps = 5/376 (1%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
           G+G       +N +++   + G  E+ +  +      G+   L T+ +I    C  GKYD
Sbjct: 285 GKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYD 344

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
            A      M   G+  +    N+LL  ICR++N       F    ++ V PD  SF+ L+
Sbjct: 345 RAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLI 404

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
               + G++ +A   F EM ER    P++V+ Y   +    R   + +ALK    M    
Sbjct: 405 GVLARNGHLYQALMHFREM-ERSGIVPDNVI-YTILIDGFCRNGALSDALKMRDEMLARG 462

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
           CF  +  ++  L+ L K      A  L++ MV  G  ++P+   +  +I   C + ++D 
Sbjct: 463 CFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERG--MVPDFYTFTTLIRGYCKDGNMDK 520

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
               F+ MV     PD +TYN + +   K   +   ++ + +MI+ +  P  ++  T + 
Sbjct: 521 ALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLN 580

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 464
               +     A+ + + +LE GI P   + N L+ G    G +     +  +M++  I+ 
Sbjct: 581 GFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIP 640

Query: 465 YEVTMHKLKKAFYNES 480
              + + L   +  E+
Sbjct: 641 DSFSYNTLIDGYLKEA 656



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 86/379 (22%), Positives = 159/379 (41%), Gaps = 5/379 (1%)

Query: 104 WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGK 162
           ++ RG       +N ++  L K G++++  + +  M + G+  +  T+ ++    C    
Sbjct: 318 FSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDN 377

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
             EA   FD MS  GV  D+V+ +SL+  + R  +     + F    +  + PD   + I
Sbjct: 378 ILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTI 437

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L++G+ + G + +A K   EM+ R  +    V+ Y TFL  L + K   +A      M  
Sbjct: 438 LIDGFCRNGALSDALKMRDEMLARGCF--MDVVTYNTFLNGLCKKKMFADADMLFNEMVE 495

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
               P    F+  +    K  +   A+ L++ MV    NL P+ + YN +I   C   ++
Sbjct: 496 RGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRT--NLKPDKVTYNTLIDGFCKAGEM 553

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
                 +D M+     PD ++Y  +      +  + E      +M++   +P  + C T 
Sbjct: 554 GRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTL 613

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
           I     + +   A E  + ++ NGI+P   S N L+ G      L        EM  R +
Sbjct: 614 IKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGL 673

Query: 463 LIYEVTMHKLKKAFYNESR 481
               +T + +   F  E +
Sbjct: 674 QFNIITYNLILNGFCAEGK 692



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/404 (21%), Positives = 172/404 (42%), Gaps = 15/404 (3%)

Query: 68  IESALACTGIIPTPDLVHEVLQLSY------DSPSSAVDFFRWAGRGQRLSPYAWNLMVD 121
           +ES ++      +  L++++L  +Y         S A    R   +G  +S  A N ++ 
Sbjct: 173 VESLISTCFYFGSVGLIYDLLVRTYVQAKKLREGSEAFQILRR--KGVSVSINACNKLLG 230

Query: 122 VLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQ 180
            L + G  +  W     +   G+ L++ T   + ++ C   K++  +     M   GV  
Sbjct: 231 GLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFA 290

Query: 181 DVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKT 239
           D+V  N+L++A CR E     A + LN    + ++P   ++  +L G  K G  + A   
Sbjct: 291 DIVTYNTLINAYCR-EGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDV 349

Query: 240 FGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299
             EM++     P +   Y T L+ + R   + EA +    M      P L  FS+ + +L
Sbjct: 350 LIEMLQ-LGLTP-NAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVL 407

Query: 300 VKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFP 359
            +      A+  +  M   G  ++P+ ++Y  +I   C N  + +  +  D+M+  G F 
Sbjct: 408 ARNGHLYQALMHFREMERSG--IVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFM 465

Query: 360 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 419
           D +TYN     L K K   + +  F+EM++    P      T I         + A+ ++
Sbjct: 466 DVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLF 525

Query: 420 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
             ++   + P + + N L+ G    G +   +   ++M+ + I+
Sbjct: 526 EAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDII 569



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 85/412 (20%), Positives = 166/412 (40%), Gaps = 41/412 (9%)

Query: 56  ICEILAHASSDDIESALACTGIIPTPDLVHEVLQ--LSYDSPSSAVDFF-RWAGRGQRLS 112
           +C+I  +  + D+   +   G+ P     + +L      D+   A + F   + RG    
Sbjct: 337 LCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPD 396

Query: 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIF-DSYCGAGKYDEAVMSFD 171
             +++ ++ VL +NG   Q     R M+  G++      +I  D +C  G   +A+   D
Sbjct: 397 LVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRD 456

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
            M   G   DVV  N+ L+ +C+++      + F   V++ + PD  +F  L+ G+ K+G
Sbjct: 457 EMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDG 516

Query: 232 NVEEANKTFGEMV------ERFEWN----------------------------PEHVLAY 257
           N+++A   F  MV      ++  +N                            P+H+ +Y
Sbjct: 517 NMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHI-SY 575

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317
            T L        + EAL     M  +   P L   +  +    +  D   A +    M+ 
Sbjct: 576 GTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMIS 635

Query: 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
            G  ++P+   YN +I       +++  F   ++M   G   + +TYN+I        ++
Sbjct: 636 NG--IIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKM 693

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
            E E+   +MI+    P     ++ I   +  D  + A    + +L+ G++P
Sbjct: 694 QEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVP 745



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 115/251 (45%), Gaps = 48/251 (19%)

Query: 115 AWNLMVDVL---GKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
            +N ++D     G+ GR +++W+ +  +++D +    ++ ++ + +C +G   EA+   D
Sbjct: 539 TYNTLIDGFCKAGEMGRAKELWDDM--IRKDIIPDHISYGTVLNGFCSSGLLPEALNLCD 596

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKE 230
            M   G+  ++V  N+L+   CR  +   +A E+L++ +   + PD  S+  L++G+ KE
Sbjct: 597 QMLEKGIRPNLVTCNTLIKGYCRSGDM-PKAYEYLSKMISNGIIPDSFSYNTLIDGYLKE 655

Query: 231 GNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
            N+E+A     EM +R  ++N   ++ Y   L       ++ EA + LR M         
Sbjct: 656 ANLEKAFILINEMEKRGLQFN---IITYNLILNGFCAEGKMQEAEQVLRKM--------- 703

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
                                     + IG N  P+   Y+++I    + D++   FRF 
Sbjct: 704 --------------------------IEIGIN--PDGATYSSLINGHVSQDNMKEAFRFH 735

Query: 350 DQMVFHGAFPD 360
           D+M+  G  PD
Sbjct: 736 DEMLQRGLVPD 746


>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
 gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
          Length = 757

 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 107/455 (23%), Positives = 191/455 (41%), Gaps = 49/455 (10%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYA--WNLMVDVLGKNGRFEQMWNAVR 137
           TP  +   L+   DS S+ +  F WA +     P +  +  ++  LGK G F+ M + ++
Sbjct: 55  TPTQLLHSLRREEDS-SAVIHLFYWASKQPNFKPSSSIFKEVLHKLGKAGEFDAMKDILK 113

Query: 138 VMKED-GVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM--------------------- 175
            MK    V+   +     +SY   G Y+E +   D M +                     
Sbjct: 114 EMKISLSVIDNDSLLVFIESYASFGLYNEILQFVDAMEVEFGVVANTHFYNFLLNVLVDG 173

Query: 176 ---------------HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDS 219
                           G+  DV   N L+ A+CR  +Q   A+  +  ++   + PD  +
Sbjct: 174 NKLKLVEIAHSNMVSRGIRPDVSTFNILIKALCRA-HQIRPAILLMEEMEDFGLLPDEKT 232

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           F  +++G+ +EGN++ A +   +MVE         +     +    +  +++EAL+F+  
Sbjct: 233 FTTIMQGFIEEGNLDGAMRVKEQMVE--AGCVVTNVTVNVLVNGFCKEGRIEEALRFIEE 290

Query: 280 MK-GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
           M   E  FP    F+  ++ L K     HA+++ D+M+  GF+  P++  YN++I  LC 
Sbjct: 291 MSLREGFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFD--PDIYTYNSLISGLCK 348

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
             +VD   +  +QM+     P+++TYN I   L K  +V E  K    +      P    
Sbjct: 349 LGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCT 408

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
             + I  L  +    +A+E++  +   G  P E + N L+  L   G+L +     +EM 
Sbjct: 409 YNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEME 468

Query: 459 NRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLE 491
                   +T + L   F    R     +IFD +E
Sbjct: 469 VSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQME 503



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 156/362 (43%), Gaps = 38/362 (10%)

Query: 156 SYCGAGKYDEAVMSFDVMSMH-GVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIV 213
            +C  G+ +EA+   + MS+  G   D    N L++ + +       ALE ++  +++  
Sbjct: 274 GFCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGLSKT-GHVKHALEVMDMMLREGF 332

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
           DPD  ++  L+ G  K G V+EA K   +M+ER + +P  V  Y T + TL +  QV+EA
Sbjct: 333 DPDIYTYNSLISGLCKLGEVDEAVKVLNQMIER-DCSPNTV-TYNTIISTLCKENQVEEA 390

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG-------------- 319
            K   V+ G+   P +  +++ +  L    + T A++L+  M   G              
Sbjct: 391 TKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDS 450

Query: 320 ----------FNLMP---------NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPD 360
                      NL+          N+I YN +I   C N  +      FDQM   G   +
Sbjct: 451 LCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRN 510

Query: 361 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 420
           S+TYN + + L K++RV E  +   +MI    +P      + +T    A + + A +I  
Sbjct: 511 SVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQ 570

Query: 421 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 480
            +  +G  P   +   L+ GL   GR+    +    +  + I +     + + +A +   
Sbjct: 571 TMASDGCEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGINLTPHAYNPVIQALFRRK 630

Query: 481 RS 482
           RS
Sbjct: 631 RS 632



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 149/349 (42%), Gaps = 7/349 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N++V+ L K G  +     + +M  +G    + T+ S+    C  G+ DEAV   + 
Sbjct: 302 YTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQ 361

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEF-LNRVKKIVDPDGDSFAILLEGWEKEG 231
           M       + V  N+++S +C+ ENQ   A +  L    K + PD  ++  L++G     
Sbjct: 362 MIERDCSPNTVTYNTIISTLCK-ENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSR 420

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           N   A + + EM  +   +P+    Y   + +L    ++ EAL  L+ M+   C   +  
Sbjct: 421 NHTVAMELYKEMKTK-GCHPDE-FTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVIT 478

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           ++  +D   K      A +++D M   G +   N + YN +I  LC ++ V+   +  DQ
Sbjct: 479 YNTLIDGFCKNKRIAEAEEIFDQMELQGVS--RNSVTYNTLIDGLCKSERVEEASQLMDQ 536

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M+  G  PD  TYN +     K   + +       M  +  +P  +   T I  L  A  
Sbjct: 537 MIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGR 596

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
            E A ++   I   GI     + N ++  L    R  +  R   EM+ +
Sbjct: 597 VEAATKLLRTIQMKGINLTPHAYNPVIQALFRRKRSKEAVRLFREMIEK 645



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 141/350 (40%), Gaps = 8/350 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKE-DGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N ++  L K G  ++    +  M E D   +  T+ +I  + C   + +EA     V
Sbjct: 337 YTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALV 396

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEG 231
           ++  G+  DV   NSL+  +C   N T  A+E    +K K   PD  ++ +L++     G
Sbjct: 397 LTGKGILPDVCTYNSLIQGLCLSRNHTV-AMELYKEMKTKGCHPDEFTYNMLIDSLCFRG 455

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            ++EA     EM         +V+ Y T +    + K++ EA +    M+ +        
Sbjct: 456 KLQEALNLLKEM--EVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVT 513

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           ++  +D L K      A QL D M+  G  L P+   YN+++   C   D+         
Sbjct: 514 YNTLIDGLCKSERVEEASQLMDQMIMEG--LRPDKFTYNSLLTYFCKAGDIKKAADIVQT 571

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M   G  PD +TY  +   L K  RV    K    +       TP      I  L     
Sbjct: 572 MASDGCEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGINLTPHAYNPVIQALFRRKR 631

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGL-RNLGRLSDVRRFAEEMLNR 460
            + A+ ++  ++E    P   +   +  GL +  G + +   F  EML R
Sbjct: 632 SKEAVRLFREMIEKAEAPDAVTYKIVFRGLCQGGGPIGEAVDFVMEMLER 681


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 133/309 (43%), Gaps = 4/309 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T++SI  S     K +E+    + M   G   DV A N ++    R  N       + + 
Sbjct: 12  TYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHM 71

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           V+    PD  S+ IL+ G  K G ++E+ K   EMV R       + AY + +  L + +
Sbjct: 72  VESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMR--GQTPSMQAYSSLVRALAKAR 129

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           +VD A      M      P    F   +  L +      A + +  M   G    PN+ +
Sbjct: 130 RVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHG--CQPNVPV 187

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           YN ++  LC++  ++     F +M  H   PD +TYN + + + K +RV E  K F  M 
Sbjct: 188 YNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMR 247

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
              + P  +  +T I  L    E E A+E++  +LE G  P + +   L+ GL    ++ 
Sbjct: 248 AAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVI 307

Query: 449 DVRRFAEEM 457
             R   E+M
Sbjct: 308 QARELFEKM 316



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/356 (22%), Positives = 149/356 (41%), Gaps = 6/356 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++++++  L K G+ ++    +  M   G   S+  ++S+  +   A + D A   FD M
Sbjct: 82  SYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARRVDHASSLFDEM 141

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G   D +    L+  +C+       +  F    K    P+   + +LL G    G +
Sbjct: 142 IRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQL 201

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           E+AN  F EM +    +P+ V+ Y T L  + + ++V+E  K    M+     P +  FS
Sbjct: 202 EQANTLFAEM-KSHSCSPD-VVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFS 259

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +  L +  +   A++++  M+  G    PN   Y  +I  LC  + V      F++M 
Sbjct: 260 TLIHGLCRTGELEKALEVFGSMLEAGCK--PNKYTYTTLISGLCRAEKVIQARELFEKMT 317

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE-WQPTPLNCATAITMLLDADEP 412
                PD++ YN +     K   + E EK + EM      QPT +   T I       + 
Sbjct: 318 QACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKL 377

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 468
             A E+   +   G+     +   L+ GL    +L +     ++M  ++ L+  V+
Sbjct: 378 GRANELVAEMGTKGLAADSCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVS 433



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 79/338 (23%), Positives = 145/338 (42%), Gaps = 15/338 (4%)

Query: 128 RFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS 187
           RF+QM       K     ++P +  +    C +G+ ++A   F  M  H    DVV  N+
Sbjct: 172 RFKQMP------KHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNT 225

Query: 188 LLSAIC--RQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245
           LL A+C  R+  +  +  E +     +  P+  +F+ L+ G  + G +E+A + FG M+E
Sbjct: 226 LLDAVCKARRVEEGCKLFEAMRAAGYV--PNVITFSTLIHGLCRTGELEKALEVFGSMLE 283

Query: 246 RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDI-LVKLND 304
                  +   Y T +  L R ++V +A +    M  + C P      N+L     K   
Sbjct: 284 --AGCKPNKYTYTTLISGLCRAEKVIQARELFEKMT-QACIPPDAVAYNSLIAGYCKRGS 340

Query: 305 STHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTY 364
              A +L+  M G G  L P ++ +N +I   C    +        +M   G   DS TY
Sbjct: 341 MDEAEKLYREMSG-GAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTY 399

Query: 365 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 424
            ++   L +  ++ E  + + +M + ++   P++C + +  L      + A  ++    +
Sbjct: 400 RILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRK 459

Query: 425 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
           +G +P   +   L   L  LGR+ D ++  E    R I
Sbjct: 460 SGAVPNPETFRILSESLIKLGRVEDAQKLMEPAKARDI 497



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 126/275 (45%), Gaps = 14/275 (5%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++D + K  R E+       M+  G V ++ TF+++    C  G+ ++A+  F  M 
Sbjct: 223 YNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSML 282

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G + +     +L+S +CR E        F    +  + PD  ++  L+ G+ K G+++
Sbjct: 283 EAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMD 342

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM--KG---ENCFPTL 289
           EA K + EM       P  ++ + T +    +  ++  A + +  M  KG   ++C  T 
Sbjct: 343 EAEKLYREMSGGAGLQPT-IVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSC--TY 399

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
           +     L    KL++   A++++  M    F L P  +   + +G LC   ++D  +  F
Sbjct: 400 RILIAGLSRATKLDE---ALEVYKQMREKKFLLDP--VSCVSFVGGLCKTGNIDQAYAVF 454

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           +     GA P+  T+ ++ E LIK  RV + +K  
Sbjct: 455 EATRKSGAVPNPETFRILSESLIKLGRVEDAQKLM 489


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 89/389 (22%), Positives = 170/389 (43%), Gaps = 10/389 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F +   +G +     + +++D L K    ++     + M + GV  +  T+  +   Y  
Sbjct: 353 FQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLS 412

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
            G+++E V     MS H +E DV     LL  +C+          F + ++K + P    
Sbjct: 413 TGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTI 472

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           + I+L G+ K+G + E +     MV     +P H + + T +    +   +DE +     
Sbjct: 473 YGIMLHGYGKKGALSEMHDLLNLMVAN-GISPNHRI-FNTVICAYAKRAMIDEVMHIFIK 530

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
           MK +   P +  +   +D L KL     AV  ++ M+  G  + PN +++N+++  LC  
Sbjct: 531 MKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEG--VTPNNVVFNSLVYGLCTV 588

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
           D  + V   F +M+  G  PD + +N +   L K  RV E  +    M+    +P  ++ 
Sbjct: 589 DKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISY 648

Query: 400 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
            T I     A   + A+++ + ++  G+ P   S N LL G    GR+ +      EML 
Sbjct: 649 NTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLR 708

Query: 460 RRIL----IYEVTMHKL-KKAFYNESRSM 483
           + +      Y   ++ L +   ++E+R +
Sbjct: 709 KGVTPGVETYNTILNGLFRSGRFSEAREL 737



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 152/325 (46%), Gaps = 18/325 (5%)

Query: 177 GVEQDVVAVNSLLSAIC-RQENQTSRAL--EFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
           G    VV+ N+LL  +C R+  + +R L    ++       PD  S+ I++ G+  EG V
Sbjct: 150 GCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVINGFFNEGQV 209

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           ++A   F EM      +P+ V+ Y T +  L + ++VD A    + M  +   P    ++
Sbjct: 210 DKAYSLFLEM----GVSPD-VVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYN 264

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +D L K  +   A  ++  MV  G  + P+ + YN +I  LC    VD     F QM+
Sbjct: 265 TIIDGLCKAQEVDMAEGVFQKMVDKG--VKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMI 322

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G  PD +TYN I + L K + + + E  F +MI    +P  L     I  L  A   +
Sbjct: 323 DRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVD 382

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNRRILIYEVTM 469
            A  ++  +++ G+ P   + N L+ G  + G+  +V +  +EM    L   +  Y + +
Sbjct: 383 RAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLL 442

Query: 470 HKL-KKAFYNESRSMRDIFDSLERR 493
             L K    NE+RS+   FDS+ R+
Sbjct: 443 DYLCKNGKCNEARSL---FDSMIRK 464



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/393 (22%), Positives = 164/393 (41%), Gaps = 7/393 (1%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F +   +G + +   +N ++D L K    +      + M + GV  S  T+ +I D  C 
Sbjct: 248 FQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCK 307

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
           A   D A   F  M   GV+ D V  N+++  +C+ +        F   + K V PD  +
Sbjct: 308 AQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLT 367

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           + I+++G  K  +V+ A   F +M+++    P +   Y   +   +   Q +E ++ ++ 
Sbjct: 368 YTIIIDGLCKAQSVDRAEGVFQQMIDK-GVKPNNG-TYNCLIHGYLSTGQWEEVVQRIKE 425

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
           M   +  P +  +   LD L K      A  L+D M+  G  + P++ +Y  ++      
Sbjct: 426 MSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKG--IKPSVTIYGIMLHGYGKK 483

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
             +  +    + MV +G  P+   +N +     K   + EV   F +M +    P  +  
Sbjct: 484 GALSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTY 543

Query: 400 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
            T I  L      + A+  +N ++  G+ P     N L+ GL  + +   V     EMLN
Sbjct: 544 GTLIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLN 603

Query: 460 RRILIYEVTMHKLKKAFYNESRSM--RDIFDSL 490
           + I    V  + +      E R M  R + DS+
Sbjct: 604 QGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSM 636



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 150/337 (44%), Gaps = 17/337 (5%)

Query: 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRAL------E 204
           A+I  +  G     +A+  FD + +H     V A+N LLS + R +  +S  L       
Sbjct: 12  AAIGRARSGNLGLHDALKLFDELLLHARPASVRALNQLLSVVSRAKCSSSSKLAVSRFNR 71

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
            L      V PD  +++I++  + + G +E     FG ++ +  W  + ++  +  L  L
Sbjct: 72  MLRDCSNKVAPDCCTYSIVIGCFCRIGRLELGFAAFG-LILKTGWRVDDIVVNQ-LLKGL 129

Query: 265 IRGKQVDEALK-FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV-GIGFNL 322
              K+V EA+   LR M    C   +  ++  L  L     +  A +L  +MV G   + 
Sbjct: 130 CDTKRVGEAMHVLLRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSC 189

Query: 323 MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
            P+++ YN VI    N   VD  +  F +M   G  PD +TYN I + L K + V   E 
Sbjct: 190 SPDVVSYNIVINGFFNEGQVDKAYSLFLEM---GVSPDVVTYNTIIDGLCKAQEVDRAED 246

Query: 383 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 442
            F +M++   +P  +   T I  L  A E ++A  ++  +++ G+ P   + N ++ GL 
Sbjct: 247 VFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLC 306

Query: 443 NLGRLSDVRRFAEEMLNRRI----LIYEVTMHKLKKA 475
               +       ++M++R +    + Y   +  L KA
Sbjct: 307 KAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKA 343



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 148/331 (44%), Gaps = 18/331 (5%)

Query: 106 GRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGK 162
           G+    SP   ++N++++     G+ ++ ++   +  E GV   + T+ +I D  C A +
Sbjct: 184 GQDSSCSPDVVSYNIVINGFFNEGQVDKAYS---LFLEMGVSPDVVTYNTIIDGLCKAQE 240

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
            D A   F  M   GV+ + V  N+++  +C+ +        F   V K V P   ++  
Sbjct: 241 VDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNT 300

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           +++G  K   V+ A   F +M++R    P+HV  Y T +  L + + +D+A    + M  
Sbjct: 301 IIDGLCKAQAVDRAEGVFQQMIDR-GVKPDHV-TYNTIIDGLCKAQAIDKAEGVFQQMID 358

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
           +   P    ++  +D L K      A  ++  M+  G  + PN   YN +I    +    
Sbjct: 359 KGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKG--VKPNNGTYNCLIHGYLSTGQW 416

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
           + V +   +M  H   PD  TY ++ + L KN + +E    F  MI+   +P+     T 
Sbjct: 417 EEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPS----VTI 472

Query: 403 ITMLLDADEPEIAI----EIWNYILENGILP 429
             ++L     + A+    ++ N ++ NGI P
Sbjct: 473 YGIMLHGYGKKGALSEMHDLLNLMVANGISP 503



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/366 (19%), Positives = 149/366 (40%), Gaps = 36/366 (9%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++    K    +++ +    MK+ G+  ++ T+ ++ D+ C  G+ D+AV+ F+ M 
Sbjct: 508 FNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMI 567

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             GV  + V  NSL+  +C  +        FL  + + + PD   F  +L    KEG V 
Sbjct: 568 NEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVM 627

Query: 235 EANKTFGEMV------ERFEWN---------------------------PEHVLAYETFL 261
           EA +    MV      +   +N                             ++++Y T L
Sbjct: 628 EARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLL 687

Query: 262 ITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFN 321
               +  ++D A    R M  +   P ++ ++  L+ L +    + A +L+  M  I   
Sbjct: 688 HGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEARELYVNM--IKSR 745

Query: 322 LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 381
            + ++  Y+ ++   C N+  D  F+ F  +       D +T+N++ + L K  R  +  
Sbjct: 746 KLWSICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDGLFKGGRKEDAM 805

Query: 382 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 441
             F  +  N   P+ +        L++    E    +++ + ++G  P     N L+  L
Sbjct: 806 DLFAAIPANGLVPSVVTYRLIAENLIEEGSLEELDCLFSVMEKSGTAPNSHMLNALIRKL 865

Query: 442 RNLGRL 447
            + G +
Sbjct: 866 LDRGEI 871


>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 584

 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 139/309 (44%), Gaps = 9/309 (2%)

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN--QTSRALEFLNRVK 210
           + +  C AGKY+E++   + M   G   DV+    L+       N  + +R +E L R  
Sbjct: 75  LLNRSCRAGKYNESLYFLECMVDKGYTPDVILCTKLIKGFFNSRNIGKATRVMEILERYG 134

Query: 211 KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270
           K   PD  ++  L+ G+ K   +E AN+    M  R  + P+ V+ Y   + +     ++
Sbjct: 135 K---PDVFAYNALISGFIKANQLENANRVLDRMKSR-GFLPD-VVTYNIMIGSFCSRGKL 189

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYN 330
           D AL+    +  +NC PT+  ++  ++  +       A++L D M+  G  L P+ + YN
Sbjct: 190 DLALEIFEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKG--LEPDTLTYN 247

Query: 331 AVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 390
           A+I  +C    VD  F     +   G  PD +TYN++   L+   +  E EK   EMI  
Sbjct: 248 AIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISI 307

Query: 391 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 450
             +P  +  +  I  L    + E A+ +   + E G+ P     + L+ G    GRL   
Sbjct: 308 GCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLA 367

Query: 451 RRFAEEMLN 459
             F E M++
Sbjct: 368 TEFLEYMIS 376



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 148/346 (42%), Gaps = 9/346 (2%)

Query: 131 QMWNAVRVMK---EDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS 187
            +  A RVM+     G   +  + ++   +  A + + A    D M   G   DVV  N 
Sbjct: 119 NIGKATRVMEILERYGKPDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNI 178

Query: 188 LLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
           ++ + C +  +   ALE F   +K   +P   ++ IL+E    +G ++ A K   EM+ +
Sbjct: 179 MIGSFCSR-GKLDLALEIFEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSK 237

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
               P+  L Y   +  + +   VD+A + LR +    C P +  ++  L  L+     +
Sbjct: 238 -GLEPD-TLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWS 295

Query: 307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM 366
              +L   M+ IG    PN++ ++ +IG LC +  V+        M   G  PD+  Y+ 
Sbjct: 296 EGEKLISEMISIGCK--PNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDP 353

Query: 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 426
           +     +  R+    +F   MI +   P  +N  T +  L    + + A+E++  + E G
Sbjct: 354 LIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVG 413

Query: 427 ILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
             P  +S N L   L + G          ++LN+ I   E+T + L
Sbjct: 414 CPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSL 459



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 85/411 (20%), Positives = 161/411 (39%), Gaps = 43/411 (10%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVR-VMKEDGVLSLPTFASIFDSYCGAG 161
           R   RG       +N+M+      G+ +        ++K++   ++ T+  + ++    G
Sbjct: 163 RMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEELLKDNCEPTVITYTILIEATILDG 222

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSF 220
             D A+   D M   G+E D +  N+++  +C+ E    +A E L  +  +   PD  ++
Sbjct: 223 GIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCK-EMMVDKAFELLRSLSSRGCKPDIITY 281

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
            ILL      G   E  K   EM+      P +V+ +   + TL R  +V+EA+  LR M
Sbjct: 282 NILLRTLLSRGKWSEGEKLISEMIS-IGCKP-NVVTHSILIGTLCRDGKVEEAVNLLRSM 339

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
           K +   P    +   +    +      A +  + M+  G   +P+++ YN ++  LC   
Sbjct: 340 KEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDG--CLPDIVNYNTIMAGLCRTG 397

Query: 341 DVDNVFRFFDQM-----------------------------------VFHGAFPDSLTYN 365
             D     F+++                                   +  G  PD +TYN
Sbjct: 398 KADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYN 457

Query: 366 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 425
            +  CL ++  V E  +   +M    ++P  ++    +  L   +    AIE+   + E 
Sbjct: 458 SLISCLCRDGMVDEAIELLVDMQSGRYRPNVVSYNIILLGLCKVNRANDAIEVLAAMTEK 517

Query: 426 GILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
           G  P E +   L+ G+   G  ++    A   L+    I E + ++L K F
Sbjct: 518 GCQPNETTYILLIEGIGFSGLRAEAMELANS-LHGMNAISEDSFNRLNKTF 567


>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
 gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g31850, chloroplastic; AltName: Full=Protein PROTON
           GRADIENT REGULATION 3; Flags: Precursor
 gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
 gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
 gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
          Length = 1112

 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 156/348 (44%), Gaps = 43/348 (12%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL----------------------------- 145
            + ++VD L K G F + ++ + VM++ G+L                             
Sbjct: 365 TFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNM 424

Query: 146 -------SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198
                  +  T+    D Y  +G    A+ +F+ M   G+  ++VA N+ L ++ +   +
Sbjct: 425 ESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKA-GR 483

Query: 199 TSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
              A +    +K I + PD  ++ ++++ + K G ++EA K   EM+E     P+ V+  
Sbjct: 484 DREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMEN-GCEPD-VIVV 541

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317
            + + TL +  +VDEA K    MK     PT+  ++  L  L K      A++L++ MV 
Sbjct: 542 NSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQ 601

Query: 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
            G    PN I +N +   LC ND+V    +   +M+  G  PD  TYN I   L+KN +V
Sbjct: 602 KG--CPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQV 659

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 425
            E   FFH+M K  + P  +   T +  ++ A   E A +I    L N
Sbjct: 660 KEAMCFFHQMKKLVY-PDFVTLCTLLPGVVKASLIEDAYKIITNFLYN 706



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 161/355 (45%), Gaps = 7/355 (1%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G + + Y + + + VLG+ G+  + +  ++ M ++G    + T+  + D+ C A K D A
Sbjct: 253 GLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCA 312

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD-PDGDSFAILLE 225
              F+ M     + D V   +LL       +  S   +F + ++K    PD  +F IL++
Sbjct: 313 KEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDS-VKQFWSEMEKDGHVPDVVTFTILVD 371

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
              K GN  EA  T   M ++      H   Y T +  L+R  ++D+AL+    M+    
Sbjct: 372 ALCKAGNFGEAFDTLDVMRDQGILPNLH--TYNTLICGLLRVHRLDDALELFGNMESLGV 429

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            PT   +   +D   K  DS  A++ ++ M   G  + PN++  NA +  L         
Sbjct: 430 KPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKG--IAPNIVACNASLYSLAKAGRDREA 487

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
            + F  +   G  PDS+TYNM+ +C  K   + E  K   EM++N  +P  +   + I  
Sbjct: 488 KQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINT 547

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           L  AD  + A +++  + E  + P   + N LL GL   G++ +     E M+ +
Sbjct: 548 LYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQK 602



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 89/372 (23%), Positives = 166/372 (44%), Gaps = 18/372 (4%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMS---- 169
            +N ++  LGKNG+ ++       M + G   +  TF ++FD  C   K DE  ++    
Sbjct: 575 TYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLC---KNDEVTLALKML 631

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK 229
           F +M M G   DV   N+++  + +   Q   A+ F +++KK+V PD  +   LL G  K
Sbjct: 632 FKMMDM-GCVPDVFTYNTIIFGLVKN-GQVKEAMCFFHQMKKLVYPDFVTLCTLLPGVVK 689

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL-RVMKGENCFPT 288
              +E+A K     +      P + L +E  + +++    +D A+ F  R++    C   
Sbjct: 690 ASLIEDAYKIITNFLYNCADQPAN-LFWEDLIGSILAEAGIDNAVSFSERLVANGICRDG 748

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
                  +    K N+ + A  L++        + P L  YN +IG L   D ++     
Sbjct: 749 DSILVPIIRYSCKHNNVSGARTLFEKFTK-DLGVQPKLPTYNLLIGGLLEADMIEIAQDV 807

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
           F Q+   G  PD  TYN + +   K+ ++ E+ + + EM  +E +   +     I+ L+ 
Sbjct: 808 FLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVK 867

Query: 409 ADEPEIAIEI-WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR----RIL 463
           A   + A+++ ++ + +    P   +   L+ GL   GRL + ++  E ML+        
Sbjct: 868 AGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCA 927

Query: 464 IYEVTMHKLKKA 475
           IY + ++   KA
Sbjct: 928 IYNILINGFGKA 939



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 88/395 (22%), Positives = 164/395 (41%), Gaps = 17/395 (4%)

Query: 55   IICEILAHASSDDIES---ALACTGIIPTPD-LVHEVLQLS--YDSPSSAVDFFRWAGRG 108
            +I  ILA A  D+  S    L   GI    D ++  +++ S  +++ S A   F    + 
Sbjct: 719  LIGSILAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKD 778

Query: 109  QRLSPY--AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
              + P    +NL++  L +    E   +    +K  G +  + T+  + D+Y  +GK DE
Sbjct: 779  LGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDE 838

Query: 166  AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD--PDGDSFAIL 223
                +  MS H  E + +  N ++S + +  N    AL+    +    D  P   ++  L
Sbjct: 839  LFELYKEMSTHECEANTITHNIVISGLVKAGN-VDDALDLYYDLMSDRDFSPTACTYGPL 897

Query: 224  LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
            ++G  K G + EA + F  M++ +   P   + Y   +    +  + D A    + M  E
Sbjct: 898  IDGLSKSGRLYEAKQLFEGMLD-YGCRPNCAI-YNILINGFGKAGEADAACALFKRMVKE 955

Query: 284  NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
               P LK +S  +D L  +      +  +  +   G N  P+++ YN +I  L  +  ++
Sbjct: 956  GVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLN--PDVVCYNLIINGLGKSHRLE 1013

Query: 344  NVFRFFDQM-VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
                 F++M    G  PD  TYN +   L     V E  K ++E+ +   +P        
Sbjct: 1014 EALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNAL 1073

Query: 403  ITMLLDADEPEIAIEIWNYILENGILPLEASANEL 437
            I     + +PE A  ++  ++  G  P   +  +L
Sbjct: 1074 IRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1108



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 109/246 (44%), Gaps = 8/246 (3%)

Query: 215  PDGDSFAILLEGWEKEGNVEEANKTFGEM-VERFEWNPEHVLAYETFLITLIRGKQVDEA 273
            PD  ++  LL+ + K G ++E  + + EM     E N    + +   +  L++   VD+A
Sbjct: 818  PDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEAN---TITHNIVISGLVKAGNVDDA 874

Query: 274  LK-FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAV 332
            L  +  +M   +  PT   +   +D L K      A QL++ M+  G    PN  +YN +
Sbjct: 875  LDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCR--PNCAIYNIL 932

Query: 333  IGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 392
            I       + D     F +MV  G  PD  TY+++ +CL    RV E   +F E+ ++  
Sbjct: 933  INGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGL 992

Query: 393  QPTPLNCATAITMLLDADEPEIAIEIWNYI-LENGILPLEASANELLVGLRNLGRLSDVR 451
             P  +     I  L  +   E A+ ++N +    GI P   + N L++ L   G + +  
Sbjct: 993  NPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAG 1052

Query: 452  RFAEEM 457
            +   E+
Sbjct: 1053 KIYNEI 1058



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 80/357 (22%), Positives = 151/357 (42%), Gaps = 15/357 (4%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRF--EQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK--- 162
           G  L+ Y++N ++ +L K+ RF  E M    R++ E    SL T++S+     G GK   
Sbjct: 183 GFVLNAYSYNGLIHLLLKS-RFCTEAMEVYRRMILEGFRPSLQTYSSLM---VGLGKRRD 238

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFA 221
            D  +     M   G++ +V      +  + R   + + A E L R+  +   PD  ++ 
Sbjct: 239 IDSVMGLLKEMETLGLKPNVYTFTICIRVLGRA-GKINEAYEILKRMDDEGCGPDVVTYT 297

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           +L++       ++ A + F E ++     P+ V  Y T L      + +D   +F   M+
Sbjct: 298 VLIDALCTARKLDCAKEVF-EKMKTGRHKPDRV-TYITLLDRFSDNRDLDSVKQFWSEME 355

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
            +   P +  F+  +D L K  +   A    D+M   G  ++PNL  YN +I  L     
Sbjct: 356 KDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQG--ILPNLHTYNTLICGLLRVHR 413

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
           +D+    F  M   G  P + TY +  +   K+       + F +M      P  + C  
Sbjct: 414 LDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNA 473

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
           ++  L  A     A +I+  + + G++P   + N ++     +G + +  +   EM+
Sbjct: 474 SLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMM 530



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 84/429 (19%), Positives = 160/429 (37%), Gaps = 52/429 (12%)

Query: 91  SYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWNAV-----RVMKEDG 143
           S+    S+  +F+       L  +    N M++ L  +G+ E+M         R++K D 
Sbjct: 94  SFPDTDSSFSYFKSVAGNLNLVHTTETCNYMLEALRVDGKLEEMAYVFDLMQKRIIKRD- 152

Query: 144 VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRAL 203
                T+ +IF S    G   +A  +   M   G   +  + N L+  + +    T  A+
Sbjct: 153 ---TNTYLTIFKSLSVKGGLKQAPYALRKMREFGFVLNAYSYNGLIHLLLKSRFCT-EAM 208

Query: 204 EFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI 262
           E   R + +   P   +++ L+ G  K  +++       EM E     P +V  +   + 
Sbjct: 209 EVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEM-ETLGLKP-NVYTFTICIR 266

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV-------------KLNDSTH-- 307
            L R  +++EA + L+ M  E C P +  ++  +D L              K+    H  
Sbjct: 267 VLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKP 326

Query: 308 --------------------AVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFR 347
                                 Q W  M   G   +P+++ +  ++  LC   +    F 
Sbjct: 327 DRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGH--VPDVVTFTILVDALCKAGNFGEAFD 384

Query: 348 FFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 407
             D M   G  P+  TYN +   L++  R+ +  + F  M     +PT       I    
Sbjct: 385 TLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYG 444

Query: 408 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEV 467
            + +   A+E +  +   GI P   + N  L  L   GR  + ++    + +  ++   V
Sbjct: 445 KSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSV 504

Query: 468 TMHKLKKAF 476
           T + + K +
Sbjct: 505 TYNMMMKCY 513



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 64/304 (21%), Positives = 117/304 (38%), Gaps = 13/304 (4%)

Query: 164  DEAVMSFDVMSMHGVEQDVVAVNSLLSAICR---QENQTSRALEFLNRVKK--IVDPDGD 218
            D AV   + +  +G+ +D    +S+L  I R   + N  S A     +  K   V P   
Sbjct: 730  DNAVSFSERLVANGICRDG---DSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLP 786

Query: 219  SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
            ++ +L+ G  +   +E A   F + V+     P+ V  Y   L    +  ++DE  +  +
Sbjct: 787  TYNLLIGGLLEADMIEIAQDVFLQ-VKSTGCIPD-VATYNFLLDAYGKSGKIDELFELYK 844

Query: 279  VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW-DIMVGIGFNLMPNLIMYNAVIGLLC 337
             M    C       +  +  LVK  +   A+ L+ D+M    F+  P    Y  +I  L 
Sbjct: 845  EMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFS--PTACTYGPLIDGLS 902

Query: 338  NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
             +  +    + F+ M+ +G  P+   YN++     K          F  M+K   +P   
Sbjct: 903  KSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLK 962

Query: 398  NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
              +  +  L      +  +  +  + E+G+ P     N ++ GL    RL +      EM
Sbjct: 963  TYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEM 1022

Query: 458  LNRR 461
               R
Sbjct: 1023 KTSR 1026


>gi|326506436|dbj|BAJ86536.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 616

 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 93/398 (23%), Positives = 170/398 (42%), Gaps = 17/398 (4%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDE 165
           RG   +P   +++++   + G F     A++V+   G  L       +  + C  G  DE
Sbjct: 137 RGCAATPPMCHVILEAACRGGGFRSAVRALQVLHAKGCTLDSGNCNLVVSAICEQGCVDE 196

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN---------QTSRALEFLNRV-KKIVDP 215
            V     +   G E D+V+ N++L  +C  +          +  R  E L+++ +    P
Sbjct: 197 GVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVHEALSQMPEHGCTP 256

Query: 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK 275
           D   +A +++G  K+G+ E AN     M   +   P +V+ Y T L  L   ++ +EA  
Sbjct: 257 DLRMYATIIDGICKDGHHEVANDILSRM-PSYGLKP-NVVCYNTVLKGLCSAERWEEAED 314

Query: 276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGL 335
            L  M  E+C      F+  +D   +       ++L + M+  G   +P++I Y  VI  
Sbjct: 315 LLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHG--CIPDVITYTTVING 372

Query: 336 LCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 395
            C    VD        M   G  P++++Y ++ + L + +R  + ++    MI+    P 
Sbjct: 373 FCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPN 432

Query: 396 PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 455
           P+   T I  +      E AIE+   +L NG  P   S + ++ GL   G+  +      
Sbjct: 433 PVTFNTLINFMCKKGLAEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLN 492

Query: 456 EMLNRRILIYEVTMHKLKKAFYNESRSMRDI--FDSLE 491
            M+N+ I    +    +  A   E R+ + I  FDS++
Sbjct: 493 VMINKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQ 530



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 159/358 (44%), Gaps = 15/358 (4%)

Query: 39  RFPTHLDAPYISSSARII---CEILAHASSDDIESALACTGIIPTPDLVHEVLQ--LSYD 93
           + P H   P +   A II   C+   H  ++DI S +   G+ P     + VL+   S +
Sbjct: 248 QMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAE 307

Query: 94  SPSSAVDFFRWAGRGQRLSPY---AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPT 149
               A D    A   Q   P     +N++VD   +NG  +++   +  M E G +  + T
Sbjct: 308 RWEEAEDLL--AEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVIT 365

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           + ++ + +C  G  DEAVM    MS  G + + ++   +L  +CR E          + +
Sbjct: 366 YTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMI 425

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
           ++   P+  +F  L+    K+G  E+A +   +M+     +P+ +++Y T +  L +  +
Sbjct: 426 QQGCLPNPVTFNTLINFMCKKGLAEQAIELLKQMLVN-GCSPD-LISYSTVIDGLGKAGK 483

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY 329
            +EAL+ L VM  +   P    +S+    L +   +   +Q++D +      +  +  +Y
Sbjct: 484 TEEALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDA--TVRSDAALY 541

Query: 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
           NAVI  LC   + D    FF  MV +G  P+  TY ++   L     V E +    E+
Sbjct: 542 NAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTILIRGLASEGLVREAQDLLSEL 599



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 79/371 (21%), Positives = 155/371 (41%), Gaps = 44/371 (11%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSYCGAG 161
           R    G + +   +N ++  L    R+E+  + +  M +ED  L   TF  + D +C  G
Sbjct: 283 RMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNG 342

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSF 220
             D  +   + M  HG   DV+   ++++  C+ E     A+  L  +      P+  S+
Sbjct: 343 LVDRVIELLEQMLEHGCIPDVITYTTVINGFCK-EGLVDEAVMLLKNMSACGCKPNTISY 401

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEW-NPEHVLAYETFLITLIRGKQVDEALKFLRV 279
            I+L+G  +     +A +    M+++    NP   + + T +  + +    ++A++ L+ 
Sbjct: 402 TIVLKGLCRAERWVDAQELISHMIQQGCLPNP---VTFNTLINFMCKKGLAEQAIELLKQ 458

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
           M    C P L  +S  +D L K   +  A++L ++M+  G    PN I+Y+++   L   
Sbjct: 459 MLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGIT--PNTIIYSSMASALSRE 516

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
              D + + FD +       D+  YN +   L K                  W       
Sbjct: 517 GRTDKIIQMFDSIQDATVRSDAALYNAVISSLCK-----------------RW------- 552

Query: 400 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
                      E + AI+ + Y++ NG +P E++   L+ GL + G + + +    E+ +
Sbjct: 553 -----------ETDRAIDFFAYMVSNGCMPNESTYTILIRGLASEGLVREAQDLLSELCS 601

Query: 460 RRILIYEVTMH 470
           RR +   +  H
Sbjct: 602 RRAVRKHLVRH 612


>gi|413955492|gb|AFW88141.1| hypothetical protein ZEAMMB73_138069 [Zea mays]
          Length = 1091

 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 100/406 (24%), Positives = 183/406 (45%), Gaps = 22/406 (5%)

Query: 63  ASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRW-----AGRGQRLSPYAWN 117
           A + ++  A+   GI P+    + VL +++      VD   W       RG + + Y++ 
Sbjct: 188 AEAMEVYKAMVEDGISPSVR-TYSVLMVAFGKKRD-VDTVLWLLNEMEARGVKPNVYSYT 245

Query: 118 LMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176
           + + VLG+  RF++ ++ +  M++ G    + T   I    C AG+  +A   F  M   
Sbjct: 246 ICIRVLGQAARFDEAYHILGKMEDSGCKPDVVTHTVIIQVLCDAGRLSDAKAVFWKMKAS 305

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD---SFAILLEGWEKEGNV 233
             + D V   +LL   C     +   +E  N +  + D   D   S+  +++   + G V
Sbjct: 306 DQKPDRVTYITLLDK-CGDSGDSQSVVEVWNAM--VADGYNDNIVSYTAVVDALCQVGRV 362

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           +EA   F EM E+   +PE   +Y + +   ++    D AL+    M    C P+   ++
Sbjct: 363 DEALAVFDEMKEK-GMSPEQ-YSYNSLISGFLKADMFDRALELFNHMNA--CGPSPNGYT 418

Query: 294 NALDI--LVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           + L I    K   S  A+Q ++ M   G  ++P++   NAV+  L  +  +    R F +
Sbjct: 419 HVLFINYYGKSGQSLKAIQRYEHMKSKG--IVPDVAAANAVLYSLAGSGRLGMAKRVFYE 476

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           +   G  PD++TY M+ +C  K  +  E   FF +M+++   P  L   + I  L    +
Sbjct: 477 LKAMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVESGCVPDVLALNSLIDTLYKGGK 536

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
              A ++++ + E  I P   + N LL GL   G++ +V +  EEM
Sbjct: 537 GNEAWQLFHKLKEMKIEPTNGTYNTLLSGLGREGKVKEVMQLLEEM 582



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 161/344 (46%), Gaps = 5/344 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++  LG+ G+ +++   +  M       +L T+ ++ D     G+ + A+     M+
Sbjct: 559 YNTLLSGLGREGKVKEVMQLLEEMTRTIYPPNLITYNTVLDCLSKNGEVNCAIDMLYSMT 618

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G   D+ + N+++  + ++E +   A     ++KKI+ PD  +   +L  + K G ++
Sbjct: 619 EKGCAPDLSSYNTVMYGLIKEE-RLEEAFRMFCQMKKILAPDYATLCTILPSFVKNGLMK 677

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           EA  T  E + +   N +   ++ + +  +++   V+++++F   +          F   
Sbjct: 678 EALHTVKEYILKAGCNVDKS-SFHSLMEGILKKAGVEKSIEFAENIASRGILLNDFFLCP 736

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
            +  L K   +  A QL++   G+G +L      YN++I  L + + +D     F +M  
Sbjct: 737 LIRHLCKHKKALEAHQLFNKFKGLGVSLKTG--SYNSLIRGLVDENLIDIAEDLFTEMKR 794

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 414
            G  PD  TYN+I + + K+ RV E+ K   EM +  ++ T +   T I+ L+ +   E 
Sbjct: 795 LGCGPDEFTYNLILDAMGKSMRVEEMLKVQKEMHRKGYESTYVTYNTIISGLVKSKRLEQ 854

Query: 415 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
           AI+++  ++  G  P   +   LL GL   G++ D      EML
Sbjct: 855 AIDLYYNLMSEGFSPTPCTYGPLLDGLLKSGKMVDAENLFNEML 898



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 102/437 (23%), Positives = 178/437 (40%), Gaps = 19/437 (4%)

Query: 33  HRPTRPRFPTHLDAPYISSSARIICEI----LAHASSDDIESALACTGIIPTPDLVHEVL 88
            +P R  + T LD    S  ++ + E+    +A   +D+I S  A    +     V E L
Sbjct: 307 QKPDRVTYITLLDKCGDSGDSQSVVEVWNAMVADGYNDNIVSYTAVVDALCQVGRVDEAL 366

Query: 89  QLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP 148
            +          F     +G     Y++N ++    K   F++       M   G     
Sbjct: 367 AV----------FDEMKEKGMSPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSPNG 416

Query: 149 TFASIFDSYCG-AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN 207
               +F +Y G +G+  +A+  ++ M   G+  DV A N++L ++            F  
Sbjct: 417 YTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLYSLAGSGRLGMAKRVFYE 476

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
                V PD  ++ ++++   K    +EA   F +MVE     P+ VLA  + + TL +G
Sbjct: 477 LKAMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVES-GCVPD-VLALNSLIDTLYKG 534

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
            + +EA +    +K     PT   ++  L  L +       +QL + M    +   PNLI
Sbjct: 535 GKGNEAWQLFHKLKEMKIEPTNGTYNTLLSGLGREGKVKEVMQLLEEMTRTIYP--PNLI 592

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            YN V+  L  N +V+        M   G  PD  +YN +   LIK +R+ E  + F +M
Sbjct: 593 TYNTVLDCLSKNGEVNCAIDMLYSMTEKGCAPDLSSYNTVMYGLIKEERLEEAFRMFCQM 652

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
            K         C    + + +    E    +  YIL+ G    ++S + L+ G+     +
Sbjct: 653 KKILAPDYATLCTILPSFVKNGLMKEALHTVKEYILKAGCNVDKSSFHSLMEGILKKAGV 712

Query: 448 SDVRRFAEEMLNRRILI 464
                FAE + +R IL+
Sbjct: 713 EKSIEFAENIASRGILL 729



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 95/422 (22%), Positives = 172/422 (40%), Gaps = 50/422 (11%)

Query: 77  IIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWN 134
           ++ T  +VH  +  S   P+ A++ F  A R   +  +  + N M++++  +GR   M  
Sbjct: 65  VVGTDSVVH--MLRSAPDPAEALELFTAAARQPTKVHTTESCNYMLELMRAHGRVGDMAQ 122

Query: 135 AVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC 193
              +M++  V  ++ TFA+IF      G    A ++  VM   G+  +    N L+  + 
Sbjct: 123 VFDLMQKQVVKTNVGTFATIFGGVGVEGGLRSAPVALPVMREAGMSLNAYTYNGLIYFLV 182

Query: 194 RQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH 253
           +          +   V+  + P   ++++L+  + K+ +V+       EM  R      +
Sbjct: 183 KSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVAFGKKRDVDTVLWLLNEMEAR--GVKPN 240

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFP-------TLKFFSNA----------- 295
           V +Y   +  L +  + DEA   L  M+   C P        ++   +A           
Sbjct: 241 VYSYTICIRVLGQAARFDEAYHILGKMEDSGCKPDVVTHTVIIQVLCDAGRLSDAKAVFW 300

Query: 296 -----------------LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
                            LD      DS   V++W+ MV  G+N   N++ Y AV+  LC 
Sbjct: 301 KMKASDQKPDRVTYITLLDKCGDSGDSQSVVEVWNAMVADGYN--DNIVSYTAVVDALCQ 358

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
              VD     FD+M   G  P+  +YN +    +K        + F+ M  N   P+P N
Sbjct: 359 VGRVDEALAVFDEMKEKGMSPEQYSYNSLISGFLKADMFDRALELFNHM--NACGPSP-N 415

Query: 399 CATAITML---LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 455
             T +  +     + +   AI+ + ++   GI+P  A+AN +L  L   GRL   +R   
Sbjct: 416 GYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLYSLAGSGRLGMAKRVFY 475

Query: 456 EM 457
           E+
Sbjct: 476 EL 477



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 156/345 (45%), Gaps = 6/345 (1%)

Query: 117  NLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176
            +LM  +L K G  + +  A  +     +L+      +    C   K  EA   F+     
Sbjct: 701  SLMEGILKKAGVEKSIEFAENIASRGILLNDFFLCPLIRHLCKHKKALEAHQLFNKFKGL 760

Query: 177  GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEE 235
            GV     + NSL+  +   EN    A +    +K++   PD  ++ ++L+   K   VEE
Sbjct: 761  GVSLKTGSYNSLIRGLV-DENLIDIAEDLFTEMKRLGCGPDEFTYNLILDAMGKSMRVEE 819

Query: 236  ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
              K   EM  R  +   +V  Y T +  L++ K++++A+     +  E   PT   +   
Sbjct: 820  MLKVQKEM-HRKGYESTYV-TYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPL 877

Query: 296  LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
            LD L+K      A  L++ M+  G    PN  +YN ++       + +NV + F++MV  
Sbjct: 878  LDGLLKSGKMVDAENLFNEMLEYGCE--PNCTIYNILLNGHRIAGNTENVCQLFEKMVEQ 935

Query: 356  GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 415
            G  PD  +Y ++ + L    R+++   +F ++ +   +P  +     I  L  ++  E A
Sbjct: 936  GINPDIKSYTILIDTLCTAGRLNDGLCYFRQLHELGLEPDLIVYNLLIDGLGKSERIEEA 995

Query: 416  IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
            + ++N + + GI+P   + N L++ L   G+ ++  +  EE+L +
Sbjct: 996  VSLFNEMKKKGIIPNLYTYNSLILHLGKAGKAAEAAQMYEELLRK 1040



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 123/283 (43%), Gaps = 7/283 (2%)

Query: 114  YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAV-MSFD 171
            + +NL++D +GK+ R E+M    + M   G  S   T+ +I      + + ++A+ + ++
Sbjct: 802  FTYNLILDAMGKSMRVEEMLKVQKEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYN 861

Query: 172  VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
            +MS  G          LL  + +          F   ++   +P+   + ILL G    G
Sbjct: 862  LMS-EGFSPTPCTYGPLLDGLLKSGKMVDAENLFNEMLEYGCEPNCTIYNILLNGHRIAG 920

Query: 232  NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            N E   + F +MVE+   NP+ + +Y   + TL    ++++ L + R +      P L  
Sbjct: 921  NTENVCQLFEKMVEQ-GINPD-IKSYTILIDTLCTAGRLNDGLCYFRQLHELGLEPDLIV 978

Query: 292  FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
            ++  +D L K      AV L++ M   G  ++PNL  YN++I  L          + +++
Sbjct: 979  YNLLIDGLGKSERIEEAVSLFNEMKKKG--IIPNLYTYNSLILHLGKAGKAAEAAQMYEE 1036

Query: 352  MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
            ++  G  P   TYN +      +         + +MI    QP
Sbjct: 1037 LLRKGWKPSVFTYNALIRGYSVSGSTDNAYAAYGQMIVGGCQP 1079



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 119/259 (45%), Gaps = 5/259 (1%)

Query: 107  RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDE 165
            +G   +   +N ++  L K+ R EQ  +    +  +G    P T+  + D    +GK  +
Sbjct: 830  KGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKSGKMVD 889

Query: 166  AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
            A   F+ M  +G E +    N LL+      N  +    F   V++ ++PD  S+ IL++
Sbjct: 890  AENLFNEMLEYGCEPNCTIYNILLNGHRIAGNTENVCQLFEKMVEQGINPDIKSYTILID 949

Query: 226  GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
                 G + +    F ++ E     P+ ++ Y   +  L + ++++EA+     MK +  
Sbjct: 950  TLCTAGRLNDGLCYFRQLHE-LGLEPD-LIVYNLLIDGLGKSERIEEAVSLFNEMKKKGI 1007

Query: 286  FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
             P L  +++ +  L K   +  A Q+++ ++  G+   P++  YNA+I     +   DN 
Sbjct: 1008 IPNLYTYNSLILHLGKAGKAAEAAQMYEELLRKGWK--PSVFTYNALIRGYSVSGSTDNA 1065

Query: 346  FRFFDQMVFHGAFPDSLTY 364
            +  + QM+  G  P+S TY
Sbjct: 1066 YAAYGQMIVGGCQPNSSTY 1084



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/279 (20%), Positives = 114/279 (40%), Gaps = 9/279 (3%)

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
           K++V  +  +FA +  G   EG +  A      M  R      +   Y   +  L++   
Sbjct: 129 KQVVKTNVGTFATIFGGVGVEGGLRSAPVALPVM--REAGMSLNAYTYNGLIYFLVKSGF 186

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY 329
             EA++  + M  +   P+++ +S  +    K  D    + L + M   G    PN+  Y
Sbjct: 187 DAEAMEVYKAMVEDGISPSVRTYSVLMVAFGKKRDVDTVLWLLNEMEARGVK--PNVYSY 244

Query: 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389
              I +L      D  +    +M   G  PD +T+ +I + L    R+ + +  F +M  
Sbjct: 245 TICIRVLGQAARFDEAYHILGKMEDSGCKPDVVTHTVIIQVLCDAGRLSDAKAVFWKMKA 304

Query: 390 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 449
           ++ +P  +   T +    D+ + +  +E+WN ++ +G      S   ++  L  +GR+ +
Sbjct: 305 SDQKPDRVTYITLLDKCGDSGDSQSVVEVWNAMVADGYNDNIVSYTAVVDALCQVGRVDE 364

Query: 450 VRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFD 488
                +EM  + +   + + + L   F        D+FD
Sbjct: 365 ALAVFDEMKEKGMSPEQYSYNSLISGFLKA-----DMFD 398


>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 168/371 (45%), Gaps = 12/371 (3%)

Query: 92  YDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMK----EDGVLS 146
           ++  S AV    R   +G +     + ++V+ L K G  +  +  +  M+    E GVL 
Sbjct: 199 HNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVL- 257

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206
              + +I D  C     D+A+  F  M   G+  +VV  +SL+S +C     +  +    
Sbjct: 258 --IYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLS 315

Query: 207 NRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
           + +++ ++PD  +F+ L++ + KEG + EA K + EMV+R   +P  ++ Y + +     
Sbjct: 316 DMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKR-SIDPS-IVTYSSLINGFCM 373

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNL 326
             ++DEA +    M  ++CFP +  +S  +    K       ++L+  M   G  L+ N 
Sbjct: 374 HDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRG--LVGNT 431

Query: 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 386
           + Y  +I  L    D D     F +MV  G  P+ +TYN + + L KN ++ +    F  
Sbjct: 432 VTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEY 491

Query: 387 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 446
           + +++ +PT       I  +  A + E   +++  +   G+ P   + N ++ G    G 
Sbjct: 492 LQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGS 551

Query: 447 LSDVRRFAEEM 457
             +     +EM
Sbjct: 552 KEEADALFKEM 562



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 169/371 (45%), Gaps = 42/371 (11%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y ++++++   +  +       + ++MK     ++ T +S+ + YC + +  EAV   D 
Sbjct: 117 YTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQ 176

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEG 231
           M + G + + V  N+L+  +    N+ S A+  ++R V K   PD  ++ +++ G  K G
Sbjct: 177 MFVTGYQPNTVTFNTLIHGLFLH-NKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRG 235

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-------- 283
           + + A     +M E+ +  P  VL Y T +  L + K +D+AL   + M+ +        
Sbjct: 236 DTDLAFILLNKM-EQGKLEP-GVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVT 293

Query: 284 -----NCF----------------------PTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
                +C                       P +  FS  +D  VK      A +L+D MV
Sbjct: 294 YSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMV 353

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
               +  P+++ Y+++I   C +D +D   + F+ MV    FPD ++Y+ + +   K KR
Sbjct: 354 KRSID--PSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKR 411

Query: 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 436
           V E  + F EM +       +   T I  L  A + ++A EI+  ++ +G+ P   + N 
Sbjct: 412 VDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNT 471

Query: 437 LLVGLRNLGRL 447
           LL GL   G+L
Sbjct: 472 LLDGLCKNGKL 482



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/338 (21%), Positives = 146/338 (43%), Gaps = 8/338 (2%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  F+ +  +     K+D  +   + M   G+  +    + L++  CR+ +Q   AL  
Sbjct: 80  SIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGMPHNHYTYSILINCFCRR-SQLPLALAV 138

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEM-VERFEWNPEHVLAYETFLIT 263
           L ++ K+  +P+  + + LL G+     + EA     +M V  ++ N    + + T +  
Sbjct: 139 LGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPN---TVTFNTLIHG 195

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLM 323
           L    +  EA+  +  M  + C P L  +   ++ L K  D+  A  L + M      L 
Sbjct: 196 LFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQ--GKLE 253

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           P +++Y  +I  LC N  +D+    F +M   G  P+ +TY+ +  CL    R  +  + 
Sbjct: 254 PGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRL 313

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
             +MI+ +  P     +  I   +   +   A ++++ +++  I P   + + L+ G   
Sbjct: 314 LSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCM 373

Query: 444 LGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
             RL + ++  E M+++      V+   L K F    R
Sbjct: 374 HDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKR 411



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 64/130 (49%), Gaps = 1/130 (0%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N ++D L KNG+ E+       ++   +  ++ T+  + +  C AGK ++    F  +
Sbjct: 468 TYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNL 527

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
           S+ GV+ DVVA N+++S  CR+ ++      F    +    P+   +  L+    ++G+ 
Sbjct: 528 SLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDR 587

Query: 234 EEANKTFGEM 243
           E + +   EM
Sbjct: 588 EASAELIKEM 597



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 54/295 (18%), Positives = 101/295 (34%), Gaps = 70/295 (23%)

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG--------- 319
           ++D+A+     M     FP++  FS  L  + K+N     + L + M  +G         
Sbjct: 61  KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGMPHNHYTYS 120

Query: 320 ------------------------FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
                                       PN++  ++++   C++  +       DQM   
Sbjct: 121 ILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT 180

Query: 356 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 415
           G  P+++T+N +   L  + +  E       M+    QP  +     +  L    + ++A
Sbjct: 181 GYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLA 240

Query: 416 IEIWNYI----LENGIL-------------------------------PLEASANELLVG 440
             + N +    LE G+L                               P   + + L+  
Sbjct: 241 FILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISC 300

Query: 441 LRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLERR 493
           L N GR SD  R   +M+ R+I     T   L  AF  E +      ++D + +R
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKR 355


>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 89/363 (24%), Positives = 162/363 (44%), Gaps = 5/363 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++N++++ L + G+  +  + +  M+  G +  + ++ +I D YC  G+  + V     M
Sbjct: 112 SYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQKVVQLVKEM 171

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
            + G++ ++   +S++  +C+              +K+ V PD   +  L++G+ K GN 
Sbjct: 172 QLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGNT 231

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           + A K F EM  R E  P+ + A+   +  L    +V EA K    M  +   P    ++
Sbjct: 232 QAAYKLFSEMEAR-EIVPDSI-AFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYT 289

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +D   KL +   A  L + MV IG  L PN++ Y A+   LC + ++D       +M 
Sbjct: 290 ALIDGYCKLGEMKKAFFLHNQMVQIG--LTPNVVTYTALADGLCKSGELDTANELLHEMC 347

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G   +  TYN I   L K   + +  K   EM +    P  +   T +       E  
Sbjct: 348 RKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMV 407

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 473
            A E+   +L+ G+ P   + N L+ GL   G+L D  R  + ML + I+    T + + 
Sbjct: 408 KARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIM 467

Query: 474 KAF 476
           K +
Sbjct: 468 KQY 470



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 75/389 (19%), Positives = 167/389 (42%), Gaps = 7/389 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G + + Y ++ ++ +L K+G+  +    +R M + GV      + ++ D +C  G    
Sbjct: 174 KGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGNTQA 233

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A   F  M    +  D +A ++L+  +            F   +KK  +PD  ++  L++
Sbjct: 234 AYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALID 293

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+ K G +++A     +MV+     P +V+ Y      L +  ++D A + L  M  +  
Sbjct: 294 GYCKLGEMKKAFFLHNQMVQ-IGLTP-NVVTYTALADGLCKSGELDTANELLHEMCRKGL 351

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
              +  ++  ++ L K  +   AV+L + M   G  L P+ I Y  ++       ++   
Sbjct: 352 QLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAG--LHPDTITYTTLMDAYYKTGEMVKA 409

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
                +M+  G  P  +T+N++   L  + ++ + E+    M++    P      + +  
Sbjct: 410 RELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQ 469

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 465
               +   I+ EI+  +   G++P   + N L+ G      + +     +EM+ +R  + 
Sbjct: 470 YCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLT 529

Query: 466 EVTMHKLKKAFYNESRSM--RDIFDSLER 492
             + + L K F+   + +  R +F+ + R
Sbjct: 530 ASSYNALIKGFFKRKKLLEARQLFEEMRR 558



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 70/331 (21%), Positives = 143/331 (43%), Gaps = 9/331 (2%)

Query: 158 CGAGKYDEAVMSFDVMS---MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIV 213
           C + K D   M   V S     GV  +  + N L++++ R   +   A   L R++ K  
Sbjct: 83  CLSSKRDMLGMVLKVFSEFPQLGVCWNTESYNILMNSLFRL-GKIREAHHLLMRMEFKGC 141

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
            PD  S+  +++G+   G +++  +   EM  + +    ++  Y + ++ L +  +V E 
Sbjct: 142 IPDVVSYTTIIDGYCHVGELQKVVQLVKEM--QLKGLKPNLYTYSSIILLLCKSGKVVEG 199

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
            K LR M     FP    ++  +D   KL ++  A +L+  M      ++P+ I ++A+I
Sbjct: 200 EKVLREMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEA--REIVPDSIAFSALI 257

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
             L  +  V    + F++M+  G  PD +TY  + +   K   + +     ++M++    
Sbjct: 258 CGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLT 317

Query: 394 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 453
           P  +        L  + E + A E+ + +   G+    ++ N ++ GL   G +    + 
Sbjct: 318 PNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKL 377

Query: 454 AEEMLNRRILIYEVTMHKLKKAFYNESRSMR 484
            EEM    +    +T   L  A+Y     ++
Sbjct: 378 MEEMKEAGLHPDTITYTTLMDAYYKTGEMVK 408



 Score = 47.4 bits (111), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 42/201 (20%), Positives = 87/201 (43%), Gaps = 5/201 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +  ++D   K G   +    +R M + G+  ++ TF  + +  C +GK ++       M
Sbjct: 392 TYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWM 451

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G+  +    NS++   C + N       +     + V PD +++ IL++G  K  N+
Sbjct: 452 LEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGHCKARNM 511

Query: 234 EEANKTFGEMVE-RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +EA     EMVE RF        +Y   +    + K++ EA +    M+ E    + + +
Sbjct: 512 KEAWFLHKEMVEKRFNLTAS---SYNALIKGFFKRKKLLEARQLFEEMRREGLVASAEIY 568

Query: 293 SNALDILVKLNDSTHAVQLWD 313
           +  +D+  +  +    ++L D
Sbjct: 569 NLFVDMNYEEGNMETTLELCD 589


>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
          Length = 1144

 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 91/371 (24%), Positives = 167/371 (45%), Gaps = 9/371 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG   +   ++ ++  L K    ++    +  M ++GV+ +  T+ SI   YC +G+  E
Sbjct: 228 RGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKE 287

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A+     M   GVE DVV  NSL+  +C+    T     F +  K+ + P+  ++  LL+
Sbjct: 288 AIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQ 347

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+  +G + E +     MV R   +P H + +   +    +  +VD+A+     M+ +  
Sbjct: 348 GYATKGALVEMHGLLDLMV-RNGIHPNHYV-FSILICAYAKQGKVDQAMLVFSKMRQQGL 405

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P    +   + IL K      A++ ++ M  I   L P  I+YN++I  LC  D  D  
Sbjct: 406 NPDTVTYGTVIGILCKSGRVEDAMRYFEQM--IDERLSPGNIVYNSLIHSLCIFDKWDKA 463

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
                +M+  G   D++ +N I +   K  RV E EK F  M++   +P  +  +T I  
Sbjct: 464 KELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDG 523

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNRR 461
              A + + A ++   ++  G+ P   + N L+ G   + R+ D      EM    ++  
Sbjct: 524 YCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPD 583

Query: 462 ILIYEVTMHKL 472
           I+ Y + +  L
Sbjct: 584 IITYNIILQGL 594



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 94/413 (22%), Positives = 171/413 (41%), Gaps = 53/413 (12%)

Query: 107 RGQRLSPYAWNLMVDVLGKNG------RFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGA 160
           RG+  S Y  N  +  + ++       R+ +M    R   ++   +L T+  +  S C A
Sbjct: 48  RGRGASIYGLNCALADVARHSPAAAVSRYNRM---ARAGADEVTPNLCTYGILIGSCCCA 104

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF-LNRVKKI-VDPDGD 218
           G+ D    +   +   G   D +A   LL  +C  + +TS A++  L R+ ++   P+  
Sbjct: 105 GRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLC-ADKRTSDAMDIVLRRMTQLGCIPNVF 163

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           S+ ILL+G   E   +EA +    M +     P  V++Y T +    +   +D+A     
Sbjct: 164 SYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYH 223

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            M      P +  +S+ +  L K      A+++   MV  G  +MPN   YN+++   C+
Sbjct: 224 EMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNG--VMPNCRTYNSIVHGYCS 281

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
           +        F  +M   G  PD +TYN + + L KN R  E  K F  M K   +P    
Sbjct: 282 SGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITT 341

Query: 399 CATAIT------------MLLD---------------------ADEPEI--AIEIWNYIL 423
             T +              LLD                     A + ++  A+ +++ + 
Sbjct: 342 YGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMR 401

Query: 424 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVTMHKL 472
           + G+ P   +   ++  L   GR+ D  R+ E+M++ R+    ++Y   +H L
Sbjct: 402 QQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSL 454



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 89/397 (22%), Positives = 173/397 (43%), Gaps = 10/397 (2%)

Query: 50  SSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQ--LSYDSPSSAVDFFR-WAG 106
           SS    +C+  A   + ++ +++   G++P     + ++    S   P  A+ F +    
Sbjct: 238 SSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHS 297

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
            G       +N ++D L KNGR  +       M + G+   + T+ ++   Y   G   E
Sbjct: 298 DGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVE 357

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
                D+M  +G+  +    + L+ A  +Q       L F    ++ ++PD  ++  ++ 
Sbjct: 358 MHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIG 417

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF-LRVMKGEN 284
              K G VE+A + F +M++    +P +++ Y + + +L    + D+A +  L ++    
Sbjct: 418 ILCKSGRVEDAMRYFEQMIDE-RLSPGNIV-YNSLIHSLCIFDKWDKAKELILEMLDRGI 475

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
           C  T+ FF++ +D   K      + +L+D+MV IG    P++I Y+ +I   C    +D 
Sbjct: 476 CLDTI-FFNSIIDSHCKEGRVIESEKLFDLMVRIGVK--PDIITYSTLIDGYCLAGKMDE 532

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
             +    MV  G  PD +TYN +     K  R+ +    F EM  +   P  +     + 
Sbjct: 533 ATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQ 592

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 441
            L        A E++  I E+G     ++ N +L GL
Sbjct: 593 GLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGL 629



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 144/322 (44%), Gaps = 17/322 (5%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSF 170
           +++N+++  L    R ++    +++M +DG    P   ++ ++ + +   G  D+A  ++
Sbjct: 163 FSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTY 222

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEK 229
             M   G+  +VV  +S+++A+C+ +    +A+E L   VK  V P+  ++  ++ G+  
Sbjct: 223 HEMLDRGILPNVVTYSSIIAALCKAQ-AMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCS 281

Query: 230 EGNVEEA----NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
            G  +EA     K   + VE     P+ V+ Y + +  L +  +  EA K    M     
Sbjct: 282 SGQPKEAIGFLKKMHSDGVE-----PD-VVTYNSLMDYLCKNGRCTEARKMFDSMTKRGL 335

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P +  +   L              L D+MV  G +  PN  +++ +I        VD  
Sbjct: 336 KPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIH--PNHYVFSILICAYAKQGKVDQA 393

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
              F +M   G  PD++TY  +   L K+ RV +  ++F +MI     P  +   + I  
Sbjct: 394 MLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHS 453

Query: 406 LLDADEPEIAIEIWNYILENGI 427
           L   D+ + A E+   +L+ GI
Sbjct: 454 LCIFDKWDKAKELILEMLDRGI 475



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 141/316 (44%), Gaps = 18/316 (5%)

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI----VDPDGDS 219
           ++A   FD +   G    +  +N  L+ + R  +  + A+   NR+ +     V P+  +
Sbjct: 36  EDARHVFDELLRRGRGASIYGLNCALADVAR--HSPAAAVSRYNRMARAGADEVTPNLCT 93

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKF-L 277
           + IL+      G ++      G ++++ F  +    +A+   L  L   K+  +A+   L
Sbjct: 94  YGILIGSCCCAGRLDLGFAALGNVIKKGFRVD---AIAFTPLLKGLCADKRTSDAMDIVL 150

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337
           R M    C P +  ++  L  L   N S  A++L  +M   G +  P+++ Y  VI    
Sbjct: 151 RRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFF 210

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
              D+D  +  + +M+  G  P+ +TY+ I   L K + + +  +    M+KN   P   
Sbjct: 211 KEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMP--- 267

Query: 398 NCATAITML---LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 454
           NC T  +++     + +P+ AI     +  +G+ P   + N L+  L   GR ++ R+  
Sbjct: 268 NCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMF 327

Query: 455 EEMLNRRILIYEVTMH 470
           + M  +R L  E+T +
Sbjct: 328 DSM-TKRGLKPEITTY 342



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 134/296 (45%), Gaps = 17/296 (5%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKE--DGVLSLP--TFASIFDSYCGA 160
           R Q L+P    +  ++ +L K+GR E   +A+R  ++  D  LS     + S+  S C  
Sbjct: 401 RQQGLNPDTVTYGTVIGILCKSGRVE---DAMRYFEQMIDERLSPGNIVYNSLIHSLCIF 457

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN--QTSRALEFLNRVKKIVDPDGD 218
            K+D+A      M   G+  D +  NS++ + C++    ++ +  + + R+   V PD  
Sbjct: 458 DKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIG--VKPDII 515

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           +++ L++G+   G ++EA K    MV      P+ V  Y T +    +  ++++AL   R
Sbjct: 516 TYSTLIDGYCLAGKMDEATKLLASMVS-VGMKPDCV-TYNTLINGYCKISRMEDALVLFR 573

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            M+     P +  ++  L  L +   +  A +L+  +   G  L   L  YN ++  LC 
Sbjct: 574 EMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQL--ELSTYNIILHGLCK 631

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
           N+  D   R F  +       ++ T+N++   L+K  R  E +  F  +  N   P
Sbjct: 632 NNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVP 687


>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 91/371 (24%), Positives = 167/371 (45%), Gaps = 9/371 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG   +   ++ ++  L K    ++    +  M ++GV+ +  T+ SI   YC +G+  E
Sbjct: 228 RGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKE 287

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A+     M   GVE DVV  NSL+  +C+    T     F +  K+ + P+  ++  LL+
Sbjct: 288 AIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQ 347

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+  +G + E +     MV R   +P H + +   +    +  +VD+A+     M+ +  
Sbjct: 348 GYATKGALVEMHGLLDLMV-RNGIHPNHYV-FSILICAYAKQGKVDQAMLVFSKMRQQGL 405

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P    +   + IL K      A++ ++ M  I   L P  I+YN++I  LC  D  D  
Sbjct: 406 NPDTVTYGTVIGILCKSGRVEDAMRYFEQM--IDERLSPGNIVYNSLIHSLCIFDKWDKA 463

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
                +M+  G   D++ +N I +   K  RV E EK F  M++   +P  +  +T I  
Sbjct: 464 KELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDG 523

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNRR 461
              A + + A ++   ++  G+ P   + N L+ G   + R+ D      EM    ++  
Sbjct: 524 YCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPD 583

Query: 462 ILIYEVTMHKL 472
           I+ Y + +  L
Sbjct: 584 IITYNIILQGL 594



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 89/397 (22%), Positives = 173/397 (43%), Gaps = 10/397 (2%)

Query: 50  SSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQ--LSYDSPSSAVDFFR-WAG 106
           SS    +C+  A   + ++ +++   G++P     + ++    S   P  A+ F +    
Sbjct: 238 SSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHS 297

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
            G       +N ++D L KNGR  +       M + G+   + T+ ++   Y   G   E
Sbjct: 298 DGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVE 357

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
                D+M  +G+  +    + L+ A  +Q       L F    ++ ++PD  ++  ++ 
Sbjct: 358 MHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIG 417

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF-LRVMKGEN 284
              K G VE+A + F +M++    +P +++ Y + + +L    + D+A +  L ++    
Sbjct: 418 ILCKSGRVEDAMRYFEQMIDE-RLSPGNIV-YNSLIHSLCIFDKWDKAKELILEMLDRGI 475

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
           C  T+ FF++ +D   K      + +L+D+MV IG    P++I Y+ +I   C    +D 
Sbjct: 476 CLDTI-FFNSIIDSHCKEGRVIESEKLFDLMVRIGVK--PDIITYSTLIDGYCLAGKMDE 532

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
             +    MV  G  PD +TYN +     K  R+ +    F EM  +   P  +     + 
Sbjct: 533 ATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQ 592

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 441
            L        A E++  I E+G     ++ N +L GL
Sbjct: 593 GLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGL 629



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/415 (19%), Positives = 169/415 (40%), Gaps = 57/415 (13%)

Query: 107 RGQRLSPYAWNLMVDVLGKNG------RFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGA 160
           RG+  S Y  N  +  + ++       R+ +M    R   ++   +L T+  +  S C A
Sbjct: 48  RGRGASIYGLNCALADVARHSPAAAVSRYNRM---ARAGADEVTPNLCTYGILMGSCCCA 104

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR------------ 208
           G+ D    +   +   G   D +A   +L  +C  + +TS A++ + R            
Sbjct: 105 GRLDLGFAALGNVIKKGFIVDAIAFTPMLKGLC-ADKRTSDAMDIVLRRMTQLGCIPNVF 163

Query: 209 -----VKKIVD----------------------PDGDSFAILLEGWEKEGNVEEANKTFG 241
                +K + D                      PD  S+  ++ G+ KEG++++A  T+ 
Sbjct: 164 SYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYH 223

Query: 242 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
           EM++R      +V+ Y + +  L + + +D+A++ L  M      P  + +++ +     
Sbjct: 224 EMLDRGIL--PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCS 281

Query: 302 LNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS 361
                 A+     M   G    P+++ YN+++  LC N       + FD M   G  P+ 
Sbjct: 282 SGQPKEAIGFLKKMHSDGVE--PDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEI 339

Query: 362 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 421
            TY  + +       + E+      M++N   P     +  I       + + A+ +++ 
Sbjct: 340 TTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSK 399

Query: 422 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVTMHKL 472
           + + G+ P   +   ++  L   GR+ D  R+ E+M++ R+    ++Y   +H L
Sbjct: 400 MRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSL 454



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/318 (22%), Positives = 142/318 (44%), Gaps = 9/318 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSF 170
           +++N+++  L  + R ++    +++M +DG    P   ++ ++ + +   G  D+A  ++
Sbjct: 163 FSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTY 222

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEK 229
             M   G+  +VV  +S+++A+C+ +    +A+E L   VK  V P+  ++  ++ G+  
Sbjct: 223 HEMLDRGILPNVVTYSSIIAALCKAQ-AMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCS 281

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
            G  +EA     +M    +     V+ Y + +  L +  +  EA K    M      P +
Sbjct: 282 SGQPKEAIGFLKKM--HSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEI 339

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
             +   L              L D+MV  G +  PN  +++ +I        VD     F
Sbjct: 340 TTYGTLLQGYATKGALVEMHGLLDLMVRNGIH--PNHYVFSILICAYAKQGKVDQAMLVF 397

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 409
            +M   G  PD++TY  +   L K+ RV +  ++F +MI     P  +   + I  L   
Sbjct: 398 SKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIF 457

Query: 410 DEPEIAIEIWNYILENGI 427
           D+ + A E+   +L+ GI
Sbjct: 458 DKWDKAKELILEMLDRGI 475



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 71/315 (22%), Positives = 139/315 (44%), Gaps = 16/315 (5%)

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI----VDPDGDS 219
           ++A   FD +   G    +  +N  L+ + R  +  + A+   NR+ +     V P+  +
Sbjct: 36  EDARHVFDELLRRGRGASIYGLNCALADVAR--HSPAAAVSRYNRMARAGADEVTPNLCT 93

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF-LR 278
           + IL+      G ++      G ++++        +A+   L  L   K+  +A+   LR
Sbjct: 94  YGILMGSCCCAGRLDLGFAALGNVIKK--GFIVDAIAFTPMLKGLCADKRTSDAMDIVLR 151

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            M    C P +  ++  L  L   N S  A++L  +M   G +  P+++ Y  VI     
Sbjct: 152 RMTQLGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFK 211

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
             D+D  +  + +M+  G  P+ +TY+ I   L K + + +  +    M+KN   P   N
Sbjct: 212 EGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMP---N 268

Query: 399 CATAITML---LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 455
           C T  +++     + +P+ AI     +  +G+ P   + N L+  L   GR ++ R+  +
Sbjct: 269 CRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFD 328

Query: 456 EMLNRRILIYEVTMH 470
            M  +R L  E+T +
Sbjct: 329 SM-TKRGLKPEITTY 342



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 134/296 (45%), Gaps = 17/296 (5%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKE--DGVLSLP--TFASIFDSYCGA 160
           R Q L+P    +  ++ +L K+GR E   +A+R  ++  D  LS     + S+  S C  
Sbjct: 401 RQQGLNPDTVTYGTVIGILCKSGRVE---DAMRYFEQMIDERLSPGNIVYNSLIHSLCIF 457

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN--QTSRALEFLNRVKKIVDPDGD 218
            K+D+A      M   G+  D +  NS++ + C++    ++ +  + + R+   V PD  
Sbjct: 458 DKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIG--VKPDII 515

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           +++ L++G+   G ++EA K    MV      P+ V  Y T +    +  ++++AL   R
Sbjct: 516 TYSTLIDGYCLAGKMDEATKLLASMVS-VGMKPDCV-TYNTLINGYCKISRMEDALVLFR 573

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            M+     P +  ++  L  L +   +  A +L+  +   G  L   L  YN ++  LC 
Sbjct: 574 EMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQL--ELSTYNIILHGLCK 631

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
           N+  D   R F  +       ++ T+N++   L+K  R  E +  F  +  N   P
Sbjct: 632 NNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVP 687


>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 794

 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 91/371 (24%), Positives = 167/371 (45%), Gaps = 9/371 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG   +   ++ ++  L K    ++    +  M ++GV+ +  T+ SI   YC +G+  E
Sbjct: 228 RGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKE 287

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A+     M   GVE DVV  NSL+  +C+    T     F +  K+ + P+  ++  LL+
Sbjct: 288 AIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQ 347

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+  +G + E +     MV R   +P H + +   +    +  +VD+A+     M+ +  
Sbjct: 348 GYATKGALVEMHGLLDLMV-RNGIHPNHYV-FSILICAYAKQGKVDQAMLVFSKMRQQGL 405

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P    +   + IL K      A++ ++ M  I   L P  I+YN++I  LC  D  D  
Sbjct: 406 NPDTVTYGTVIGILCKSGRVEDAMRYFEQM--IDERLSPGNIVYNSLIHSLCIFDKWDKA 463

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
                +M+  G   D++ +N I +   K  RV E EK F  M++   +P  +  +T I  
Sbjct: 464 KELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDG 523

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNRR 461
              A + + A ++   ++  G+ P   + N L+ G   + R+ D      EM    ++  
Sbjct: 524 YCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPD 583

Query: 462 ILIYEVTMHKL 472
           I+ Y + +  L
Sbjct: 584 IITYNIILQGL 594



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 89/397 (22%), Positives = 173/397 (43%), Gaps = 10/397 (2%)

Query: 50  SSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQ--LSYDSPSSAVDFFR-WAG 106
           SS    +C+  A   + ++ +++   G++P     + ++    S   P  A+ F +    
Sbjct: 238 SSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHS 297

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
            G       +N ++D L KNGR  +       M + G+   + T+ ++   Y   G   E
Sbjct: 298 DGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVE 357

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
                D+M  +G+  +    + L+ A  +Q       L F    ++ ++PD  ++  ++ 
Sbjct: 358 MHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIG 417

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF-LRVMKGEN 284
              K G VE+A + F +M++    +P +++ Y + + +L    + D+A +  L ++    
Sbjct: 418 ILCKSGRVEDAMRYFEQMIDE-RLSPGNIV-YNSLIHSLCIFDKWDKAKELILEMLDRGI 475

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
           C  T+ FF++ +D   K      + +L+D+MV IG    P++I Y+ +I   C    +D 
Sbjct: 476 CLDTI-FFNSIIDSHCKEGRVIESEKLFDLMVRIGVK--PDIITYSTLIDGYCLAGKMDE 532

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
             +    MV  G  PD +TYN +     K  R+ +    F EM  +   P  +     + 
Sbjct: 533 ATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQ 592

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 441
            L        A E++  I E+G     ++ N +L GL
Sbjct: 593 GLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGL 629



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 94/413 (22%), Positives = 171/413 (41%), Gaps = 53/413 (12%)

Query: 107 RGQRLSPYAWNLMVDVLGKNG------RFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGA 160
           RG+  S Y  N  +  + ++       R+ +M    R   ++   +L T+  +  S C A
Sbjct: 48  RGRGASIYGLNCALADVARHSPAAAVSRYNRM---ARAGADEVTPNLCTYGILIGSCCCA 104

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF-LNRVKKI-VDPDGD 218
           G+ D    +   +   G   D +A   LL  +C  + +TS A++  L R+ ++   P+  
Sbjct: 105 GRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLC-ADKRTSDAMDIVLRRMTQLGCIPNVF 163

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           S+ ILL+G   E   +EA +    M +     P  V++Y T +    +   +D+A     
Sbjct: 164 SYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYH 223

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            M      P +  +S+ +  L K      A+++   MV  G  +MPN   YN+++   C+
Sbjct: 224 EMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNG--VMPNCRTYNSIVHGYCS 281

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
           +        F  +M   G  PD +TYN + + L KN R  E  K F  M K   +P    
Sbjct: 282 SGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITT 341

Query: 399 CATAIT------------MLLD---------------------ADEPEI--AIEIWNYIL 423
             T +              LLD                     A + ++  A+ +++ + 
Sbjct: 342 YGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMR 401

Query: 424 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVTMHKL 472
           + G+ P   +   ++  L   GR+ D  R+ E+M++ R+    ++Y   +H L
Sbjct: 402 QQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSL 454



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 71/318 (22%), Positives = 141/318 (44%), Gaps = 9/318 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSF 170
           +++N+++  L    R ++    +++M +DG    P   ++ ++ + +   G  D+A  ++
Sbjct: 163 FSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTY 222

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEK 229
             M   G+  +VV  +S+++A+C+ +    +A+E L   VK  V P+  ++  ++ G+  
Sbjct: 223 HEMLDRGILPNVVTYSSIIAALCKAQ-AMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCS 281

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
            G  +EA     +M    +     V+ Y + +  L +  +  EA K    M      P +
Sbjct: 282 SGQPKEAIGFLKKM--HSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEI 339

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
             +   L              L D+MV  G +  PN  +++ +I        VD     F
Sbjct: 340 TTYGTLLQGYATKGALVEMHGLLDLMVRNGIH--PNHYVFSILICAYAKQGKVDQAMLVF 397

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 409
            +M   G  PD++TY  +   L K+ RV +  ++F +MI     P  +   + I  L   
Sbjct: 398 SKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIF 457

Query: 410 DEPEIAIEIWNYILENGI 427
           D+ + A E+   +L+ GI
Sbjct: 458 DKWDKAKELILEMLDRGI 475



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 141/316 (44%), Gaps = 18/316 (5%)

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI----VDPDGDS 219
           ++A   FD +   G    +  +N  L+ + R  +  + A+   NR+ +     V P+  +
Sbjct: 36  EDARHVFDELLRRGRGASIYGLNCALADVAR--HSPAAAVSRYNRMARAGADEVTPNLCT 93

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKF-L 277
           + IL+      G ++      G ++++ F  +    +A+   L  L   K+  +A+   L
Sbjct: 94  YGILIGSCCCAGRLDLGFAALGNVIKKGFRVD---AIAFTPLLKGLCADKRTSDAMDIVL 150

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337
           R M    C P +  ++  L  L   N S  A++L  +M   G +  P+++ Y  VI    
Sbjct: 151 RRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFF 210

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
              D+D  +  + +M+  G  P+ +TY+ I   L K + + +  +    M+KN   P   
Sbjct: 211 KEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMP--- 267

Query: 398 NCATAITML---LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 454
           NC T  +++     + +P+ AI     +  +G+ P   + N L+  L   GR ++ R+  
Sbjct: 268 NCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMF 327

Query: 455 EEMLNRRILIYEVTMH 470
           + M  +R L  E+T +
Sbjct: 328 DSM-TKRGLKPEITTY 342



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 134/296 (45%), Gaps = 17/296 (5%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKE--DGVLSLP--TFASIFDSYCGA 160
           R Q L+P    +  ++ +L K+GR E   +A+R  ++  D  LS     + S+  S C  
Sbjct: 401 RQQGLNPDTVTYGTVIGILCKSGRVE---DAMRYFEQMIDERLSPGNIVYNSLIHSLCIF 457

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN--QTSRALEFLNRVKKIVDPDGD 218
            K+D+A      M   G+  D +  NS++ + C++    ++ +  + + R+   V PD  
Sbjct: 458 DKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIG--VKPDII 515

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           +++ L++G+   G ++EA K    MV      P+ V  Y T +    +  ++++AL   R
Sbjct: 516 TYSTLIDGYCLAGKMDEATKLLASMVS-VGMKPDCV-TYNTLINGYCKISRMEDALVLFR 573

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            M+     P +  ++  L  L +   +  A +L+  +   G  L   L  YN ++  LC 
Sbjct: 574 EMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQL--ELSTYNIILHGLCK 631

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
           N+  D   R F  +       ++ T+N++   L+K  R  E +  F  +  N   P
Sbjct: 632 NNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVP 687


>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Glycine max]
          Length = 905

 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 77/358 (21%), Positives = 158/358 (44%), Gaps = 4/358 (1%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK 162
           R   +G   S  A+N ++  LG+ G+ E+    +  MK D   +L ++  + D  C AG+
Sbjct: 367 RQKRKGCIPSVIAYNCILTCLGRKGKVEEALRILEAMKMDAAPNLTSYNILIDMLCKAGE 426

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
            + A+   D M   G+  +++ VN ++  +C+ +        FL    K+  PD  +F  
Sbjct: 427 LEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRLDEACSIFLGLDHKVCTPDSVTFCS 486

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L++G  + G V +A   + +M++  +  P  V+ Y + +    +  + ++  K  + M  
Sbjct: 487 LIDGLGRHGKVNDAYMLYEKMLDSGQ-TPNAVV-YTSLIRNFFKCGRKEDGHKIYKEMMH 544

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
             C P L   +N +D + K  +      L++ +   G  L P++  Y+ +I  L      
Sbjct: 545 RGCSPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQG--LTPDVRSYSILIHGLVKGGFS 602

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
            + ++ F +M   G   D+  YN++ +   K+ +V++  +   EM     QPT +   + 
Sbjct: 603 KDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSV 662

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           I  L   D  + A  ++       +       + L+ G   +GR+ +     EE++ +
Sbjct: 663 IDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQK 720



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 79/349 (22%), Positives = 136/349 (38%), Gaps = 59/349 (16%)

Query: 80  TPD------LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMW 133
           TPD      L+H +++  +   +  + F+    +G  L   A+N+++D   K+G+  + +
Sbjct: 583 TPDVRSYSILIHGLVKGGFSKDTYKL-FYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAY 641

Query: 134 NAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI 192
             +  MK  G+  ++ T+ S+ D      + DEA M F+      V+ +VV  +S     
Sbjct: 642 QLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSS----- 696

Query: 193 CRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER------ 246
                                         L++G+ K G ++EA     E++++      
Sbjct: 697 ------------------------------LIDGFGKVGRIDEAYLILEELMQKGLTPNT 726

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
           + WN          L  L++ +++DEAL   + MK   C P    +S  ++ L K+    
Sbjct: 727 YTWN--------CLLDALVKAEEIDEALVCFQNMKNLKCPPNEVTYSIMVNGLCKVRKFN 778

Query: 307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM 366
            A   W  M   G  L PN I Y  +I  L    +V      F++    G  PDS  YN 
Sbjct: 779 KAFVFWQEMQKQG--LKPNTITYTTMISGLARVGNVLEAKDLFERFKSSGGIPDSACYNA 836

Query: 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 415
           + E L    +  +    F E      +     C   +  L  AD  E A
Sbjct: 837 MIEGLSNANKAMDAYILFEETRLKGCRIYSKTCVVLLDALHKADCLEQA 885



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 83/369 (22%), Positives = 147/369 (39%), Gaps = 45/369 (12%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N+ +D  GK G+ +  W     +K  G++    TF S+    C A + DEAV  F+ + 
Sbjct: 275 YNVCIDCFGKVGKVDMAWKFFHELKSQGLVPDDVTFTSMIGVLCKAERVDEAVELFEELD 334

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
            +     V A N+++                                    G+   G   
Sbjct: 335 SNKSVPCVYAYNTMIM-----------------------------------GYGSVGKFN 359

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           EA     E  +R    P  V+AY   L  L R  +V+EAL+ L  MK  +  P L  ++ 
Sbjct: 360 EAYSLL-ERQKRKGCIPS-VIAYNCILTCLGRKGKVEEALRILEAMK-MDAAPNLTSYNI 416

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
            +D+L K  +   A+++ D M   G  L PN+I  N +I  LC    +D     F  +  
Sbjct: 417 LIDMLCKAGELEAALKVQDSMKEAG--LFPNIITVNIMIDRLCKAQRLDEACSIFLGLDH 474

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 414
               PDS+T+  + + L ++ +V++    + +M+ +   P  +   + I         E 
Sbjct: 475 KVCTPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKED 534

Query: 415 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNRRILIYEVTMH 470
             +I+  ++  G  P     N  +  +   G +   R   EE+    L   +  Y + +H
Sbjct: 535 GHKIYKEMMHRGCSPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSYSILIH 594

Query: 471 KLKKAFYNE 479
            L K  +++
Sbjct: 595 GLVKGGFSK 603



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 83/385 (21%), Positives = 159/385 (41%), Gaps = 38/385 (9%)

Query: 119 MVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           ++D LG++G+    +     M + G   +   + S+  ++   G+ ++    +  M   G
Sbjct: 487 LIDGLGRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRG 546

Query: 178 VEQDVVAVNSLLSAICRQ-ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA 236
              D++ +N+ +  + +  E +  RAL F     + + PD  S++IL+ G  K G  ++ 
Sbjct: 547 CSPDLMLLNNYMDCVFKAGEIEKGRAL-FEEIKAQGLTPDVRSYSILIHGLVKGGFSKDT 605

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
            K F EM E  +       AY   +    +  +V++A + L  MK +   PT+  + + +
Sbjct: 606 YKLFYEMKE--QGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVI 663

Query: 297 DILVKLNDSTHAVQLW--------DIMVGI------GFN-------------------LM 323
           D L K++    A  L+        D+ V +      GF                    L 
Sbjct: 664 DGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGLT 723

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           PN   +N ++  L   +++D     F  M      P+ +TY+++   L K ++ ++   F
Sbjct: 724 PNTYTWNCLLDALVKAEEIDEALVCFQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAFVF 783

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
           + EM K   +P  +   T I+ L        A +++     +G +P  A  N ++ GL N
Sbjct: 784 WQEMQKQGLKPNTITYTTMISGLARVGNVLEAKDLFERFKSSGGIPDSACYNAMIEGLSN 843

Query: 444 LGRLSDVRRFAEEMLNRRILIYEVT 468
             +  D     EE   +   IY  T
Sbjct: 844 ANKAMDAYILFEETRLKGCRIYSKT 868



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 58/307 (18%), Positives = 127/307 (41%), Gaps = 20/307 (6%)

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN----R 208
           + D+Y      ++A+ +FD M              L+  + R+      AL +      +
Sbjct: 76  VLDTYPWGAALEDALNTFDEMPQP----------ELVVGVIRRLKDVRVALHYFRWVERK 125

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
            K++  P+  ++  LL    +  N+E   +   EM     + P +    E  + + ++ +
Sbjct: 126 TKQLHSPE--AYNALLMLMARTRNLEYLEQILEEM-SMAGFGPSNNTCIE-MVASFVKSR 181

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           ++ EA   +  M+     P    ++  +  L   +++   + L   M  IG+ +  +L  
Sbjct: 182 KLREAFGVIETMRKFKFRPAYSAYTTLIGALSAAHEADPMLTLLRQMQEIGYEVTVHL-- 239

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           +  +I +      VD      D+M  +    D + YN+  +C  K  +V    KFFHE+ 
Sbjct: 240 FTTLICVFAREGRVDAALSLLDEMKSNSFNADLVLYNVCIDCFGKVGKVDMAWKFFHELK 299

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
                P  +   + I +L  A+  + A+E++  +  N  +P   + N +++G  ++G+ +
Sbjct: 300 SQGLVPDDVTFTSMIGVLCKAERVDEAVELFEELDSNKSVPCVYAYNTMIMGYGSVGKFN 359

Query: 449 DVRRFAE 455
           +     E
Sbjct: 360 EAYSLLE 366


>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 624

 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 80/383 (20%), Positives = 174/383 (45%), Gaps = 38/383 (9%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N+M+++L + G++++  + +  M+  GV  ++ T+ ++ + YC  GK++ A   F  M
Sbjct: 219 TFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGKFEAASKIFKTM 278

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
               ++ D    NS +S +C++      +      ++  + P+  ++  L++G   +G++
Sbjct: 279 KDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCNKGDL 338

Query: 234 EEANKTFGEMVER------FEWN----------------------------PEHVLAYET 259
           ++A     EM+ R      F +N                            P+ V+ Y  
Sbjct: 339 DKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPD-VVTYNI 397

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG 319
            +    R     +AL     M  +N  PT++ +++ +D+  K N  + A + +   +  G
Sbjct: 398 QINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEG 457

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
             ++P++IM+NA+I   C N ++D  F+   +M      PD +T+N + +   + ++V E
Sbjct: 458 --MLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEE 515

Query: 380 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 439
            +K   EM +   +P  ++  T I+      + + A+E+++ +L  G  P   + N L+ 
Sbjct: 516 AKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQ 575

Query: 440 GLRNLGRLSDVRRFAEEMLNRRI 462
           G   +G          EM ++ I
Sbjct: 576 GYSKIGEADHAEELLREMQSKGI 598



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 122/269 (45%), Gaps = 5/269 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDE 165
           RG   S + +NL++  L    R E+  + ++ M+E GV   + T+    + YC  G   +
Sbjct: 351 RGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKK 410

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A+  FD M    +   V    SL+    ++   +    +F   +K+ + PD   F  L++
Sbjct: 411 ALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALID 470

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G    GN++ A +   EM +  +  P+ V  + T +    R ++V+EA K L  MK    
Sbjct: 471 GHCVNGNIDRAFQLLKEM-DNAKVVPDEV-TFNTLMQGYCRERKVEEAKKLLDEMKERGI 528

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P    ++  +    K  D   A++++D M+ +GF+  P L+ YNA+I       + D+ 
Sbjct: 529 KPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFD--PTLLTYNALIQGYSKIGEADHA 586

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKN 374
                +M   G  PD  TY  + E +  N
Sbjct: 587 EELLREMQSKGITPDDSTYLYVIEAMKTN 615



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 142/329 (43%), Gaps = 13/329 (3%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           + + L P  Y +N  +  L K  R E+    +  + E G++ +  T+ ++ D  C  G  
Sbjct: 279 KDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCNKGDL 338

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAI 222
           D+A    D M   G+   V   N L+ A+   E +   A + +  ++ K V+PD  ++ I
Sbjct: 339 DKAFAYRDEMMNRGIVASVFTYNLLIHALF-LEKRIEEAEDMIKEMREKGVEPDVVTYNI 397

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI--RGKQVDEALKFLRVM 280
            + G+ + GN ++A   F EMVE+   N    +   T LI +   R +  +   KF + +
Sbjct: 398 QINGYCRCGNAKKALSLFDEMVEK---NIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSI 454

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
           K E   P +  F+  +D      +   A QL   M      ++P+ + +N ++   C   
Sbjct: 455 K-EGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNA--KVVPDEVTFNTLMQGYCRER 511

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
            V+   +  D+M   G  PD ++YN +     K   + +  + F EM+   + PT L   
Sbjct: 512 KVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYN 571

Query: 401 TAITMLLDADEPEIAIEIWNYILENGILP 429
             I       E + A E+   +   GI P
Sbjct: 572 ALIQGYSKIGEADHAEELLREMQSKGITP 600



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 81/390 (20%), Positives = 161/390 (41%), Gaps = 49/390 (12%)

Query: 78  IPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL---SPYAWNLMVDVLGKNGRFEQMWN 134
           +P+P     +LQ    + +  V F   +    RL   +   ++L++    +  + ++   
Sbjct: 109 LPSPKPSFHILQPILHTTTPTVIFNELSLARNRLNVKTTLVFDLLLSAYCQFRKPDEALE 168

Query: 135 AVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC 193
            + +MKE+ ++    T  S+        K   A   ++ M    ++  +V  N +++ +C
Sbjct: 169 CLNLMKENEIIPKTETCNSLLSLLLKLNKIKMAWFVYEEMVKMNIKSSIVTFNIMINILC 228

Query: 194 RQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
           R E +  +A +F+  ++   V P+  ++  ++ G+   G  E A+K F  M ++    P+
Sbjct: 229 R-EGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGKFEAASKIFKTMKDK-NLKPD 286

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
               Y +F+  L + ++++EA                        +L KL +S       
Sbjct: 287 -CYTYNSFISRLCKERRIEEAS----------------------GVLCKLLES------- 316

Query: 313 DIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 372
                    L+PN + YNA+I   CN  D+D  F + D+M+  G      TYN++   L 
Sbjct: 317 --------GLVPNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALF 368

Query: 373 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 432
             KR+ E E    EM +   +P  +     I         + A+ +++ ++E  I P   
Sbjct: 369 LEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVE 428

Query: 433 SANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
           +   L+       R+S+    AEE   + I
Sbjct: 429 TYTSLIDVFGKRNRMSE----AEEKFKKSI 454



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 109/243 (44%), Gaps = 3/243 (1%)

Query: 240 FGEM-VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDI 298
           F E+ + R   N +  L ++  L    + ++ DEAL+ L +MK     P  +  ++ L +
Sbjct: 132 FNELSLARNRLNVKTTLVFDLLLSAYCQFRKPDEALECLNLMKENEIIPKTETCNSLLSL 191

Query: 299 LVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAF 358
           L+KLN    A  +++ MV +  N+  +++ +N +I +LC          F   M  +G  
Sbjct: 192 LLKLNKIKMAWFVYEEMVKM--NIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVK 249

Query: 359 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 418
           P+ +TYN +        +     K F  M     +P      + I+ L      E A  +
Sbjct: 250 PNVVTYNTVINGYCLRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGV 309

Query: 419 WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 478
              +LE+G++P   + N L+ G  N G L     + +EM+NR I+    T + L  A + 
Sbjct: 310 LCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFL 369

Query: 479 ESR 481
           E R
Sbjct: 370 EKR 372


>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 618

 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 141/294 (47%), Gaps = 7/294 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +++++D L K G+  +    + VM + G++ +L T+ S+ D +C  G  + A   F  M
Sbjct: 309 TFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSM 368

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGN 232
              G+E D ++  +L++  C+   +   A+   N + ++   P+  ++  LL+G  ++G 
Sbjct: 369 PSKGLEPDEISYTTLINGYCKTW-KVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGK 427

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           V +A K FG M          +  Y  FL  L +   + EA++    +K  N    ++ +
Sbjct: 428 VGDAKKLFGVMKTYGVSANSQI--YGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENY 485

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           S  +D L K      A +L++ +   G  L P+++ YN +I   C    VDN    F++M
Sbjct: 486 SCLIDGLCKAGKLETAWELFEKLSQEG--LQPDVVTYNIMIHGFCKVGQVDNANILFEKM 543

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406
             +G  PD + YN +     +  ++ EV K  H+M++ +  P   +C   + ML
Sbjct: 544 EENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKDVSPNAASCTIVVDML 597



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/363 (21%), Positives = 159/363 (43%), Gaps = 10/363 (2%)

Query: 98  AVDFFRWAGRGQRLSPYA-WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFD 155
           A  FF    R   + P + +N ++  L K   + Q+++    M+  G+   L T + + +
Sbjct: 75  AFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFTLSILAN 134

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VD 214
             C   +  EA+ +   +   G   +VV   +L+  +C  E++ S A     R++K+   
Sbjct: 135 CLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLC-MEHRISEATRLFLRMQKLGCT 193

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMV---ERFEWNPE-HVLAYETFLITLIRGKQV 270
           P+  ++  L++G  + GNV  A K   EM+    ++  N +  V+ Y   +  L +  + 
Sbjct: 194 PNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGRE 253

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYN 330
           DEA +    MK +   P +  +S  +           +  L+D MV  G  + P+++ ++
Sbjct: 254 DEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQG--VQPDMVTFS 311

Query: 331 AVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 390
            +I  LC    V    +  + M+  G  P+ +TYN + +       ++   + F  M   
Sbjct: 312 VLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSK 371

Query: 391 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 450
             +P  ++  T I       + + A+ ++N +L+ G  P   +   LL GL   G++ D 
Sbjct: 372 GLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDA 431

Query: 451 RRF 453
           ++ 
Sbjct: 432 KKL 434



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/340 (20%), Positives = 136/340 (40%), Gaps = 35/340 (10%)

Query: 138 VMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           +M+   +  + +F  +         Y +    ++ M + G+  D+  ++ L + +C   N
Sbjct: 82  MMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFTLSILANCLCNV-N 140

Query: 198 QTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
           + S AL  +  + ++   P+  ++  L++G   E  + EA + F  M ++    P  V  
Sbjct: 141 RVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRM-QKLGCTPNAV-T 198

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
           Y T +  L +   V+ ALK  + M                     LND++          
Sbjct: 199 YGTLIKGLCQTGNVNIALKLHKEM---------------------LNDASQ--------- 228

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
             G N  P +I Y+ +I  LC     D     F++M   G  PD ++Y+ +        +
Sbjct: 229 -YGVNCKPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGK 287

Query: 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 436
             + +  F EM+    QP  +  +  I  L    +   A ++   +++ GI+P   + N 
Sbjct: 288 WDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNS 347

Query: 437 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
           L+ G   +G L+  R     M ++ +   E++   L   +
Sbjct: 348 LIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGY 387



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 67/317 (21%), Positives = 134/317 (42%), Gaps = 14/317 (4%)

Query: 187 SLLSAICRQENQTS-RALEFLN-RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244
           SL    C+  N T+ +A  F +  ++    P   SF  LL G  K  +  +    + EM 
Sbjct: 59  SLFLRNCKTGNITAIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNEM- 117

Query: 245 ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 304
            R       +         L    +V EAL  +  +      P +  ++  +  L   + 
Sbjct: 118 -RLAGLSPDLFTLSILANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHR 176

Query: 305 STHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGA------F 358
            + A +L+  M  +G    PN + Y  +I  LC   +V+   +   +M+   +       
Sbjct: 177 ISEATRLFLRMQKLG--CTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCK 234

Query: 359 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 418
           P  +TY++I + L K  R  E ++ F EM      P  ++ +T I     A + + +  +
Sbjct: 235 PGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHL 294

Query: 419 WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF-- 476
           ++ +++ G+ P   + + L+  L   G++++ ++  E M+ R I+   +T + L   F  
Sbjct: 295 FDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCM 354

Query: 477 YNESRSMRDIFDSLERR 493
             +  S R++F S+  +
Sbjct: 355 VGDLNSARELFLSMPSK 371


>gi|224113307|ref|XP_002316451.1| predicted protein [Populus trichocarpa]
 gi|222865491|gb|EEF02622.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 93/430 (21%), Positives = 191/430 (44%), Gaps = 53/430 (12%)

Query: 72  LACTGIIP---TPDLVHEVLQLSYDSPSSAVDFFRWA-GRGQRLSPYAWNLMVDVLGKNG 127
           + C G +P   T  ++ + L  S D   +A+D +R A G+G ++  Y  +++++ L K G
Sbjct: 197 IKCNGFVPDGFTYSIIFDGLLKSDDGAGAALDLYREAIGKGVKIDNYTCSILLNGLCKEG 256

Query: 128 RFEQMWNAVRVMKEDGVLSLPT-FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN 186
           + E+    ++ + E G++     + +I + YC  G  D A+++ + M   G+  + +A N
Sbjct: 257 KVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRAILTIEQMESRGLRPNCIAFN 316

Query: 187 SLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245
           S++   C  +    +A E++ + V K + P  +++ IL++G+   G +   ++ F +++E
Sbjct: 317 SVIDKFCEMQ-MIDKAEEWVKKMVGKGIAPSVETYNILIDGY---GRLCVFSRCF-QILE 371

Query: 246 RFEWNPE--HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303
             E N E  +V++Y + +  L +  ++ EA   LR M G    P    ++  +D    + 
Sbjct: 372 EMEENGEKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVG 431

Query: 304 DSTHAVQLWDIMV--GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS 361
               A++ +D M   GIG      ++ YN++I  LC    +      F  +   G  PD 
Sbjct: 432 KLREALRFFDEMSKNGIG----ATIVTYNSLIKGLCKMGKLKEAEEMFFLITSTGHCPDV 487

Query: 362 LTYNMIF----------ECL------------------------IKNKRVHEVEKFFHEM 387
           +TYN +           +CL                           + +   E  F+EM
Sbjct: 488 ITYNSLISGYSNAGNSQKCLELYETMKKLGLKPTINTFHPLISGCSKEGIKLKETLFNEM 547

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
           ++    P  +     I    +    + A  +   +++ G+ P   + N L++G    G+L
Sbjct: 548 LQMNLSPDRVVYNAMIHCYQETGHVQKAFSLQKEMVDMGVRPDNKTYNSLILGHLKEGKL 607

Query: 448 SDVRRFAEEM 457
           S+ +   ++M
Sbjct: 608 SETKDLVDDM 617



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 101/410 (24%), Positives = 173/410 (42%), Gaps = 70/410 (17%)

Query: 98  AVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP----TFA 151
           A++ F    R +++ P  + +N+++  L K  R     +A ++  E  V +L     TF 
Sbjct: 85  AMELFETMKR-RKVVPNVFVYNVLIGGLCKEKRIR---DAEKLFGEMSVRNLVPNRVTFN 140

Query: 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK- 210
           ++ D YC AG+ D A+   + M    VE  ++  NSLLS +C+   +   A   LN +K 
Sbjct: 141 TLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSGLCKAR-RIEEARCMLNEIKC 199

Query: 211 ------------------------------------KIVDPDGDSFAILLEGWEKEGNVE 234
                                               K V  D  + +ILL G  KEG VE
Sbjct: 200 NGFVPDGFTYSIIFDGLLKSDDGAGAALDLYREAIGKGVKIDNYTCSILLNGLCKEGKVE 259

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           +A +    +VE     P  V+ Y T +    +   +D A+  +  M+     P    F++
Sbjct: 260 KAEEVLKSLVEH-GLVPGEVI-YNTIVNGYCQIGDMDRAILTIEQMESRGLRPNCIAFNS 317

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI---GLLCNNDDVDNVFRFFDQ 351
            +D   ++     A +    MVG G  + P++  YN +I   G LC        F+  ++
Sbjct: 318 VIDKFCEMQMIDKAEEWVKKMVGKG--IAPSVETYNILIDGYGRLCV---FSRCFQILEE 372

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD- 410
           M  +G  P+ ++Y  +  CL K+ ++ E E    +M+     P     A    ML+D   
Sbjct: 373 MEENGEKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPN----ANIYNMLIDGSC 428

Query: 411 ---EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
              +   A+  ++ + +NGI     + N L+ GL  +G+L +    AEEM
Sbjct: 429 TVGKLREALRFFDEMSKNGIGATIVTYNSLIKGLCKMGKLKE----AEEM 474



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 151/360 (41%), Gaps = 12/360 (3%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAG 161
           +  G+G   S   +N+++D  G+   F + +  +  M+E+G   ++ ++ S+ +  C  G
Sbjct: 337 KMVGKGIAPSVETYNILIDGYGRLCVFSRCFQILEEMEENGEKPNVISYGSLINCLCKDG 396

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSF 220
           K  EA M    M   GV  +    N L+   C    +   AL F + + K  +     ++
Sbjct: 397 KILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTV-GKLREALRFFDEMSKNGIGATIVTY 455

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
             L++G  K G ++EA + F  ++      P+ V+ Y + +          + L+    M
Sbjct: 456 NSLIKGLCKMGKLKEAEEMF-FLITSTGHCPD-VITYNSLISGYSNAGNSQKCLELYETM 513

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG--IGFNLMPNLIMYNAVIGLLCN 338
           K     PT+  F   +        S   ++L + +    +  NL P+ ++YNA+I     
Sbjct: 514 KKLGLKPTINTFHPLIS-----GCSKEGIKLKETLFNEMLQMNLSPDRVVYNAMIHCYQE 568

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
              V   F    +MV  G  PD+ TYN +    +K  ++ E +    +M      P    
Sbjct: 569 TGHVQKAFSLQKEMVDMGVRPDNKTYNSLILGHLKEGKLSETKDLVDDMKAKGLIPEADT 628

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
            +  I    D  +   A   +  +LENG LP     NEL  GLR  GRL + +    EM+
Sbjct: 629 YSLLIQGHCDLKDFNGAYVWYREMLENGFLPNVCICNELSTGLRKDGRLQEAQSICSEMI 688



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 80/189 (42%), Gaps = 5/189 (2%)

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           QV E   F+R    E   P+  +    ++ LV+     + + L+  MVG+GF   P+ ++
Sbjct: 14  QVSELYDFMRQ---EGRLPSFGYVRMIVESLVESKKFDNVLDLFKEMVGLGFR--PDKLV 68

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           Y   +       D+      F+ M      P+   YN++   L K KR+ + EK F EM 
Sbjct: 69  YGRAMLAAVKLGDLKLAMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIRDAEKLFGEMS 128

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
                P  +   T I     A E ++AI +   + +  + P   + N LL GL    R+ 
Sbjct: 129 VRNLVPNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSGLCKARRIE 188

Query: 449 DVRRFAEEM 457
           + R    E+
Sbjct: 189 EARCMLNEI 197



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 2/167 (1%)

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL 322
           +L+  K+ D  L   + M G    P    +  A+   VKL D   A++L++ M      +
Sbjct: 40  SLVESKKFDNVLDLFKEMVGLGFRPDKLVYGRAMLAAVKLGDLKLAMELFETMKR--RKV 97

Query: 323 MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
           +PN+ +YN +IG LC    + +  + F +M      P+ +T+N + +   K   V     
Sbjct: 98  VPNVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNRVTFNTLIDGYCKAGEVDVAIG 157

Query: 383 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
               M K + +P+ +   + ++ L  A   E A  + N I  NG +P
Sbjct: 158 LRERMKKEKVEPSIITFNSLLSGLCKARRIEEARCMLNEIKCNGFVP 204



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 55/293 (18%), Positives = 121/293 (41%), Gaps = 10/293 (3%)

Query: 188 LLSAIC---RQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244
           +L ++C   +  +Q S   +F+ +  ++  P      +++E   +    +     F EMV
Sbjct: 1   MLLSVCSESKMHSQVSELYDFMRQEGRL--PSFGYVRMIVESLVESKKFDNVLDLFKEMV 58

Query: 245 ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 304
               + P+  L Y   ++  ++   +  A++    MK     P +  ++  +  L K   
Sbjct: 59  -GLGFRPDK-LVYGRAMLAAVKLGDLKLAMELFETMKRRKVVPNVFVYNVLIGGLCKEKR 116

Query: 305 STHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTY 364
              A +L+  M     NL+PN + +N +I   C   +VD      ++M      P  +T+
Sbjct: 117 IRDAEKLFGEMSV--RNLVPNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITF 174

Query: 365 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE-PEIAIEIWNYIL 423
           N +   L K +R+ E     +E+  N + P     +     LL +D+    A++++   +
Sbjct: 175 NSLLSGLCKARRIEEARCMLNEIKCNGFVPDGFTYSIIFDGLLKSDDGAGAALDLYREAI 234

Query: 424 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
             G+     + + LL GL   G++       + ++   ++  EV  + +   +
Sbjct: 235 GKGVKIDNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGY 287


>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
 gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
          Length = 659

 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 150/329 (45%), Gaps = 15/329 (4%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKE-DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++D L K G+ E+    + VM E D    + T++ + +  C  GK D+A +  ++M 
Sbjct: 340 YNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMML 399

Query: 175 MHGVEQDVVAVNSLLSAICR--QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
             G + ++V  N+++   C+  + ++  + LE +  V     PD  +++ L++G+ K   
Sbjct: 400 ERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVS--CTPDVVTYSTLIDGYCKANR 457

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +++A    G        +P+   +Y + L  L    +V+EA + + +M  + C PT   +
Sbjct: 458 MQDAFAILG-------ISPDKA-SYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHY 509

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  +  L  +     A+++  +M   G    PNL  Y+ +I  LC    V++     D M
Sbjct: 510 ALIIGGLCDVERGDEALKMLQVMSERGCE--PNLYTYSILINGLCKTKRVEDAINVLDVM 567

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
           +  G  PD  TY  + +   K  ++    + F  M  +  +P  L     I+    +   
Sbjct: 568 LEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNV 627

Query: 413 EIAIEIWNYILENGILPLEASANELLVGL 441
           E AIE+   +LE G  P  A+   L+  L
Sbjct: 628 EKAIEVMQLMLEKGCNPDAATYFSLMRSL 656



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 85/378 (22%), Positives = 162/378 (42%), Gaps = 8/378 (2%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSF 170
           + + + +++  L +  R ++ +  +  ++++D       +  +    C  GK D A    
Sbjct: 91  TAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMGKIDAARNVL 150

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEK 229
            +M       DV+   SL+   C Q N    A + + ++K+  + PD  ++  LL G  K
Sbjct: 151 KMMLERSCVPDVITYTSLIVGCC-QTNALDEARKLMEKMKESGLTPDTVAYNALLNGLCK 209

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
           +  +EE +K   EMVE          +Y T +  L    + +EA K L  M  + C P +
Sbjct: 210 QNQLEEVSKLLEEMVE--AGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDV 267

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
             +++ +D   K++    A +L + MVG      P +I Y  +IG     D + + +R  
Sbjct: 268 VTYNSLMDGFCKVSKMDEAERLLEDMVG--RRCAPTVITYTTLIGGFSRADRLADAYRVM 325

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 409
           + M   G  PD +TYN + + L K  ++ E  +    M++ +  P  +  +  +  L   
Sbjct: 326 EDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKL 385

Query: 410 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTM 469
            + + A  +   +LE G  P   + N ++ G    G++ +  +  E M         VT 
Sbjct: 386 GKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTY 445

Query: 470 HKLKKAFYNESRSMRDIF 487
             L   +   +R M+D F
Sbjct: 446 STLIDGYCKANR-MQDAF 462



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 150/353 (42%), Gaps = 15/353 (4%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T  +I  +YC  G  D A+  F                 L+  +C Q  +   A + L+ 
Sbjct: 61  THNTILKAYCQIGDLDRALSHF--RGKMWCSPTAFTYCILIHGLC-QCQRIDEAYQLLDE 117

Query: 209 -VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            ++K   PD   +  L+ G  K G ++ A      M+ER    P+ V+ Y + ++   + 
Sbjct: 118 MIQKDCHPDAAVYNCLIAGLCKMGKIDAARNVLKMMLER-SCVPD-VITYTSLIVGCCQT 175

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
             +DEA K +  MK     P    ++  L+ L K N      +L + MV  G    P+  
Sbjct: 176 NALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGRE--PDTF 233

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            YN V+  LC +   +   +  ++M+     PD +TYN + +   K  ++ E E+   +M
Sbjct: 234 SYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDM 293

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
           +     PT +   T I     AD    A  +   + + GI P   + N LL GL   G+L
Sbjct: 294 VGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKL 353

Query: 448 SDVRRFAEEMLNR----RILIYEVTMHKLKK-AFYNESRSMRDIFDSLERRCK 495
            +     E M+ +     ++ Y + ++ L K    +++R + ++   LER C+
Sbjct: 354 EEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMM--LERGCQ 404



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/331 (22%), Positives = 146/331 (44%), Gaps = 10/331 (3%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ ++   +  AG     +   + M       DV+  N++L A C Q     RAL    R
Sbjct: 26  TYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAYC-QIGDLDRALSHF-R 83

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
            K    P   ++ IL+ G  +   ++EA +   EM+++ + +P+  + Y   +  L +  
Sbjct: 84  GKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQK-DCHPDAAV-YNCLIAGLCKMG 141

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           ++D A   L++M   +C P +  +++ +    + N    A +L + M   G  L P+ + 
Sbjct: 142 KIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESG--LTPDTVA 199

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           YNA++  LC  + ++ V +  ++MV  G  PD+ +YN +  CL ++ +  E  K   +MI
Sbjct: 200 YNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMI 259

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
           + +  P  +   + +       + + A  +   ++     P   +   L+ G     RL+
Sbjct: 260 EKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLA 319

Query: 449 DVRRFAEEMLNRRI----LIYEVTMHKLKKA 475
           D  R  E+M    I    + Y   +  L KA
Sbjct: 320 DAYRVMEDMFKAGISPDLVTYNCLLDGLCKA 350



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 141/312 (45%), Gaps = 16/312 (5%)

Query: 186 NSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTF-GEM 243
            +L++   R  N +   LE  N  + +   PD  +   +L+ + + G+++ A   F G+M
Sbjct: 28  GALITGFSRAGN-SKMVLEIANEMLARRFSPDVITHNTILKAYCQIGDLDRALSHFRGKM 86

Query: 244 VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303
                W       Y   +  L + +++DEA + L  M  ++C P    ++  +  L K+ 
Sbjct: 87  -----WCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMG 141

Query: 304 DSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLT 363
               A  +  +M  +  + +P++I Y ++I   C  + +D   +  ++M   G  PD++ 
Sbjct: 142 KIDAARNVLKMM--LERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVA 199

Query: 364 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 423
           YN +   L K  ++ EV K   EM++   +P   +  T +  L ++ + E A +I   ++
Sbjct: 200 YNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMI 259

Query: 424 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR----ILIYEVTMHKLKKA--FY 477
           E    P   + N L+ G   + ++ +  R  E+M+ RR    ++ Y   +    +A    
Sbjct: 260 EKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLA 319

Query: 478 NESRSMRDIFDS 489
           +  R M D+F +
Sbjct: 320 DAYRVMEDMFKA 331



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 118/262 (45%), Gaps = 17/262 (6%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKY 163
           RG + +   +N M+D   K G+ ++    + +MKE  V   P   T++++ D YC A + 
Sbjct: 401 RGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKE--VSCTPDVVTYSTLIDGYCKANRM 458

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAI 222
                  D  ++ G+  D  + +S+L  +C    +   A E ++   K+   P    +A+
Sbjct: 459 Q------DAFAILGISPDKASYSSMLEGLC-STGKVEEAQEVMDLMTKQGCPPTSSHYAL 511

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           ++ G       +EA K    M ER      ++  Y   +  L + K+V++A+  L VM  
Sbjct: 512 IIGGLCDVERGDEALKMLQVMSER--GCEPNLYTYSILINGLCKTKRVEDAINVLDVMLE 569

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
           + C P +  +++ +D   K+N    A Q +  M   G    P+ + YN +I   C + +V
Sbjct: 570 KGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCE--PDKLAYNILISGFCQSGNV 627

Query: 343 DNVFRFFDQMVFHGAFPDSLTY 364
           +        M+  G  PD+ TY
Sbjct: 628 EKAIEVMQLMLEKGCNPDAATY 649


>gi|357134597|ref|XP_003568903.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15200-like [Brachypodium distachyon]
          Length = 537

 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 115/480 (23%), Positives = 205/480 (42%), Gaps = 45/480 (9%)

Query: 38  PRF-PTHLDAPYI-----------SSSARIIC-----EILAHASSD-DIESALACTGIIP 79
           PRF PT +   Y+           S  +R +C      IL  +  D D+  AL       
Sbjct: 51  PRFCPTVVPRGYVLGAPRLCHTSASEDSRDVCIDQVLRILKSSDGDTDLGKALHRFAGEM 110

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFE---QMWN 134
             D+V  VLQ    +   A+ FF WA         P  +  M+D+LG+  + +   Q+++
Sbjct: 111 DEDVVLRVLQKQRSNWQVALLFFNWAAGLPAYAHGPRTYTEMLDILGRMKKVKLMTQLFD 170

Query: 135 AVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194
            +   +   V++  TFA + + Y GA K  EA+  F     +G E D+V    LL ++CR
Sbjct: 171 EIPEERRGLVVTNRTFAVLLNRYAGAHKVQEAIEMFYKRKDYGFEVDLVGFQILLMSLCR 230

Query: 195 QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV 254
            ++       FL + K    P   S+ I+L GW  +G++ +A + + +++   +  P+ +
Sbjct: 231 YKHVEEAEALFLQK-KDEFPPVIKSWNIILNGWCVKGSLPDAKRIWNQIIAS-KLKPD-L 287

Query: 255 LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314
             Y TF+ +L +  ++  A+K    M  +   P +   +  +D L        A+ ++  
Sbjct: 288 FTYGTFINSLTKAGKLSTAVKLFTSMWEKGINPDVAICNCIIDQLCFKKKIPEALDIFRE 347

Query: 315 MVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN 374
           M   G     ++  YN +I   C     + V+   D M   G  P+++TY+ I +   K 
Sbjct: 348 MTDRG--CQADVATYNTLIKYFCKIRRTEKVYELLDDMENKGCSPNNMTYSYILKTTEKP 405

Query: 375 KRVHEVEKFFHEMIKNEWQPTPLNCAT---AITMLLDADEPEIAIEIWNYILENGILPLE 431
           K V       H + + E     L+  T    + + +         ++W+ +  NG  P +
Sbjct: 406 KDV------IHLLQRMEKSGCRLDSDTYNLILNLYVSMKYENGVQQVWDEMERNGSGPDQ 459

Query: 432 ASANELLVGLRNLGRLSDVRRFAEEMLNR--------RILIYEVTMHKLKKAFYNESRSM 483
            S   ++ GL + GRL    ++   M +R        RIL+  + M K   A  ++S SM
Sbjct: 460 RSFTIMVHGLHSQGRLDQALQYYTTMKSRGMTPEPRTRILVKAIHMKKDGPAVEDQSPSM 519


>gi|115482066|ref|NP_001064626.1| Os10g0421800 [Oryza sativa Japonica Group]
 gi|113639235|dbj|BAF26540.1| Os10g0421800, partial [Oryza sativa Japonica Group]
          Length = 973

 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 123/520 (23%), Positives = 210/520 (40%), Gaps = 72/520 (13%)

Query: 18  PSSSSTTTSPTSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGI 77
           PSS +   S    +P RP++ R             AR+  +  A    D+  +A      
Sbjct: 51  PSSRTAGVSSPGLSPSRPSKRRI----------GRARV--QPRAPPPCDERRAA------ 92

Query: 78  IPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWNA 135
               D++H +   S D P+ A++ FR A R  R+  +  + N M++++  +GR   M   
Sbjct: 93  ---EDVIHALR--SADGPAEALERFRSAARKPRVAHTTASCNYMLELMRGHGRVGDMAEV 147

Query: 136 VRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194
             VM+   V  ++ TFA+IF      G    A ++  VM   G+  +    N L+  + +
Sbjct: 148 FDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVK 207

Query: 195 QENQTSRALEFLNRVKKI--VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
                  ALE + RV  +  V P   ++++L+  + K  +VE       EM E     P 
Sbjct: 208 S-GFDREALE-VYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREM-EAHGVKP- 263

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL-------------KFFSNALDIL 299
           +V +Y   +  L + K+ DEA + L  M+ E C P +                S+A D+ 
Sbjct: 264 NVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVF 323

Query: 300 VKL----------------------NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337
            K+                       DS   +++W+ M   G+N   N++ Y AVI  LC
Sbjct: 324 WKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYN--DNVVAYTAVIDALC 381

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
               V      FD+M   G  P+  +YN +    +K  R  +  + F  M  +  +P   
Sbjct: 382 QVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGY 441

Query: 398 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
                I     + E   AI+ +  +   GI+P   + N +L GL   GRL   +R   E+
Sbjct: 442 THVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHEL 501

Query: 458 LNRRILIYEVTMHKLKKAFYNESR---SMRDIFDSLERRC 494
               +    +T   + K     S+   +++  +D +E  C
Sbjct: 502 KAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNC 541



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 161/354 (45%), Gaps = 11/354 (3%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G + + Y++ + + VLG+  RF++ +  +  M+ +G    + T   +    C AG+  +A
Sbjct: 260 GVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDA 319

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD---SFAIL 223
              F  M     + D V   +LL       +  S  +E  N +K   D   D   ++  +
Sbjct: 320 KDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQS-VMEIWNAMK--ADGYNDNVVAYTAV 376

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           ++   + G V EA + F EM ++    PE   +Y + +   ++  +  +AL+  + M   
Sbjct: 377 IDALCQVGRVFEALEMFDEMKQK-GIVPEQ-YSYNSLISGFLKADRFGDALELFKHMDIH 434

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
              P        ++   K  +S  A+Q +++M   G  ++P+++  NAV+  L  +  + 
Sbjct: 435 GPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKG--IVPDVVAGNAVLFGLAKSGRLG 492

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
              R F ++   G  PD++TY M+ +C  K  +  E  K F++MI+N   P  L   + I
Sbjct: 493 MAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLI 552

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
             L  A   + A  I+  + E  + P + + N LL GL   G++ +V    EEM
Sbjct: 553 DTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEM 606



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 83/381 (21%), Positives = 170/381 (44%), Gaps = 25/381 (6%)

Query: 96  SSAVDFFRWAGRGQR------------LSPY--AWNLMVDVLGKNGRFEQMWNAVRVMKE 141
           +S +D    AGRG              L P    +N ++  LG+ G+ +++ + +  M  
Sbjct: 549 NSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYH 608

Query: 142 DGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS 200
                +L T+ +I D  C  G  ++A+     M+  G   D+ + N+++  + ++E + +
Sbjct: 609 SNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEE-RYN 667

Query: 201 RALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL---AY 257
            A     ++KK++ PD  +   +L  + K G ++EA      +++ +   P       + 
Sbjct: 668 EAFSIFCQMKKVLIPDYATLCTILPSFVKIGLMKEAL----HIIKDYFLQPGSKTDRSSC 723

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317
            + +  +++   ++++++F  ++          F    +  L K   +  A +L      
Sbjct: 724 HSLMEGILKKAGIEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKS 783

Query: 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
            G +L   L  YN++I  L + + +D     F +M   G  PD  TYN++ + + K+ R+
Sbjct: 784 FGVSLKTGL--YNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRI 841

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 437
            E+ K   EM +  ++ T +   T I+ L+ +   E AI+++  ++  G  P   +   L
Sbjct: 842 EEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPL 901

Query: 438 LVGLRNLGRLSDVRRFAEEML 458
           L GL   GR+ D      EML
Sbjct: 902 LDGLLKAGRIEDAENLFNEML 922



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 91/385 (23%), Positives = 159/385 (41%), Gaps = 55/385 (14%)

Query: 81  PDLV-HEVL-QLSYDSP--SSAVD-FFRWAGRGQRLSPYAWNLMVDVLGKNGRFE---QM 132
           PD++ H VL Q+  D+   S A D F++     Q+     +  ++D  G NG  +   ++
Sbjct: 298 PDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEI 357

Query: 133 WNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
           WNA   MK DG   ++  + ++ D+ C  G+  EA+  FD M   G+  +  + NSL+S 
Sbjct: 358 WNA---MKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISG 414

Query: 192 ICRQE-------------------------------NQTSRALEFLNRVK----KIVDPD 216
             + +                                ++  +++ + R +    K + PD
Sbjct: 415 FLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPD 474

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
             +   +L G  K G +  A + F E+ +    +P+  + Y   +    +  + DEA+K 
Sbjct: 475 VVAGNAVLFGLAKSGRLGMAKRVFHEL-KAMGVSPD-TITYTMMIKCCSKASKFDEAVKI 532

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG-FNLMPNLIMYNAVIGL 335
              M   NC P +   ++ +D L K      A   W I   +   NL P    YN ++  
Sbjct: 533 FYDMIENNCVPDVLAVNSLIDTLYKAGRGDEA---WRIFYQLKEMNLEPTDGTYNTLLAG 589

Query: 336 LCNNDDVDNVFRFFDQMVFHGAFPDSL-TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
           L     V  V    ++M +H  +P +L TYN I +CL KN  V++     + M      P
Sbjct: 590 LGREGKVKEVMHLLEEM-YHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIP 648

Query: 395 TPLNCATAITMLLDADEPEIAIEIW 419
              +  T I  L+  +    A  I+
Sbjct: 649 DLSSYNTVIYGLVKEERYNEAFSIF 673


>gi|357137687|ref|XP_003570431.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Brachypodium distachyon]
          Length = 938

 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 165/359 (45%), Gaps = 7/359 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIF-DSYCGAGKYDE 165
           RG  L    +  ++D L K G     +   + + E  +L      ++F +  C  GK  E
Sbjct: 518 RGVLLDHVNYTTLIDGLFKTGNLPAAFKVGQELTEKNLLPDAVVYNVFINCLCMLGKSKE 577

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILL 224
           A    + M   G++ D V  N++++A  R E +T++AL+ LN +K+  + P+  +++ L+
Sbjct: 578 AESFLEEMQSTGLKPDQVTYNTMIAAQSR-EGKTAKALKLLNGMKRSSIKPNLITYSTLI 636

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G  + G VE+A     EM     ++P   L +   L    +G++ D  L+    M    
Sbjct: 637 VGLFEAGAVEKAKYLLNEMSSS-GFSPTS-LTHRRVLQACSQGRRSDLILEIHEWMMNAG 694

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
               +  ++  + +L     +  A+ + + M G G  + P+ I +NA+I     +  +DN
Sbjct: 695 LCADITVYNTLVRVLCYNGMTRKAMVVLEEMSGRG--IAPDTITFNALILGHFKSGHLDN 752

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
            F  +DQM++HG  P+  T+N +   L    R+ E +   +EM K   +P+ L     +T
Sbjct: 753 AFSTYDQMLYHGISPNVATFNTLLGGLESAGRIGESDMVLNEMKKRGIEPSNLTYDILVT 812

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
                     A+ ++  ++  G LP  ++ N L+     +G +S  +    EM NR +L
Sbjct: 813 GYGKQSNKVEAVRLYCEMVGKGFLPKVSTYNALISDFSKVGMMSQAKELFNEMQNRGVL 871



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 94/376 (25%), Positives = 154/376 (40%), Gaps = 6/376 (1%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAG 161
           R  G G  L    WN +VD   K G  E  +     MK  GV + +  + S+    C AG
Sbjct: 165 RGGGIGG-LDVVGWNSLVDGYCKVGDMETAFAVAERMKAQGVGVDVVGYNSLVAGLCRAG 223

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221
           + D A    D M   GVE +VV     +   CR+         +   V+K V PD  + +
Sbjct: 224 EVDAARDMVDTMKRDGVEPNVVTYTMFIVEYCRRNAVDDAFSLYEEMVRKGVLPDVVTLS 283

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L+ G  K+G   EA   F EM E+    P HV  Y   + TL + ++ +E+L  L  + 
Sbjct: 284 ALVGGLCKDGRFSEAYALFREM-EKIGAAPNHV-TYCMLIDTLAKAQRGNESLSLLGEVV 341

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
                  L  ++  +D L K      A  ++     +  N  PN + Y  +I  LC   +
Sbjct: 342 SRGVVMDLIMYTALMDWLCKEGKIDEAKDMFRH--ALSDNHTPNGVTYTVLIDALCKAGN 399

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
           VD   +   +M      P+ +T++ I   L+K   V +   +  EM +    P  +   T
Sbjct: 400 VDGAEQVLSEMEEKSISPNVVTFSSIINGLVKRGWVGKATDYMREMKERGIDPNVVTYGT 459

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461
            I         E A+++++ +L  G+   +   + L+ GL+  G++        EM  R 
Sbjct: 460 VIDGSFKCLGQEAALDVYHEMLCEGVEVNKFIVDSLVNGLKKNGKIEKAEALFREMNERG 519

Query: 462 ILIYEVTMHKLKKAFY 477
           +L+  V    L    +
Sbjct: 520 VLLDHVNYTTLIDGLF 535



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 78/398 (19%), Positives = 162/398 (40%), Gaps = 36/398 (9%)

Query: 119 MVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           +V  L K+GRF + +   R M++ G   +  T+  + D+   A + +E++     +   G
Sbjct: 285 LVGGLCKDGRFSEAYALFREMEKIGAAPNHVTYCMLIDTLAKAQRGNESLSLLGEVVSRG 344

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
           V  D++   +L+  +C++         F + +     P+G ++ +L++   K GNV+ A 
Sbjct: 345 VVMDLIMYTALMDWLCKEGKIDEAKDMFRHALSDNHTPNGVTYTVLIDALCKAGNVDGAE 404

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297
           +   EM E+   +P +V+ + + +  L++   V +A  ++R MK     P +  +   +D
Sbjct: 405 QVLSEMEEK-SISP-NVVTFSSIINGLVKRGWVGKATDYMREMKERGIDPNVVTYGTVID 462

Query: 298 ILVKLNDSTHAVQLWDIMV--GIGFN-------------------------------LMP 324
              K      A+ ++  M+  G+  N                               ++ 
Sbjct: 463 GSFKCLGQEAALDVYHEMLCEGVEVNKFIVDSLVNGLKKNGKIEKAEALFREMNERGVLL 522

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           + + Y  +I  L    ++   F+   ++      PD++ YN+   CL    +  E E F 
Sbjct: 523 DHVNYTTLIDGLFKTGNLPAAFKVGQELTEKNLLPDAVVYNVFINCLCMLGKSKEAESFL 582

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
            EM     +P  +   T I       +   A+++ N +  + I P   + + L+VGL   
Sbjct: 583 EEMQSTGLKPDQVTYNTMIAAQSREGKTAKALKLLNGMKRSSIKPNLITYSTLIVGLFEA 642

Query: 445 GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 482
           G +   +    EM +       +T  ++ +A     RS
Sbjct: 643 GAVEKAKYLLNEMSSSGFSPTSLTHRRVLQACSQGRRS 680



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 72/347 (20%), Positives = 150/347 (43%), Gaps = 10/347 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVR-VMKEDGVLSLPTFASIFDSYCGAGKYDE 165
           RG  +    +  ++D L K G+ ++  +  R  + ++   +  T+  + D+ C AG  D 
Sbjct: 343 RGVVMDLIMYTALMDWLCKEGKIDEAKDMFRHALSDNHTPNGVTYTVLIDALCKAGNVDG 402

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILL 224
           A      M    +  +VV  +S+++ + ++     +A +++  +K + +DP+  ++  ++
Sbjct: 403 AEQVLSEMEEKSISPNVVTFSSIINGLVKR-GWVGKATDYMREMKERGIDPNVVTYGTVI 461

Query: 225 EGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           +G  K    E A   + EM+ E  E N       ++ +  L +  ++++A    R M   
Sbjct: 462 DGSFKCLGQEAALDVYHEMLCEGVEVNK---FIVDSLVNGLKKNGKIEKAEALFREMNER 518

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
                   ++  +D L K  +   A ++   +     NL+P+ ++YN  I  LC      
Sbjct: 519 GVLLDHVNYTTLIDGLFKTGNLPAAFKVGQELTEK--NLLPDAVVYNVFINCLCMLGKSK 576

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
               F ++M   G  PD +TYN +     +  +  +  K  + M ++  +P  +  +T I
Sbjct: 577 EAESFLEEMQSTGLKPDQVTYNTMIAAQSREGKTAKALKLLNGMKRSSIKPNLITYSTLI 636

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 450
             L +A   E A  + N +  +G  P   +   +L      GR SD+
Sbjct: 637 VGLFEAGAVEKAKYLLNEMSSSGFSPTSLTHRRVLQACSQ-GRRSDL 682



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 103/219 (47%), Gaps = 8/219 (3%)

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRA---LEFLNRVKKIVDPDGDSFAILLEGWEK 229
           M   GV  D V VN++L  +CR + +  RA    E + R   I   D   +  L++G+ K
Sbjct: 128 MCKRGVPFDAVTVNTVLVGLCR-DGRVDRAAALAEVMVRGGGIGGLDVVGWNSLVDGYCK 186

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
            G++E A      M  + +     V+ Y + +  L R  +VD A   +  MK +   P +
Sbjct: 187 VGDMETAFAVAERM--KAQGVGVDVVGYNSLVAGLCRAGEVDAARDMVDTMKRDGVEPNV 244

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
             ++  +    + N    A  L++ MV  G  ++P+++  +A++G LC +      +  F
Sbjct: 245 VTYTMFIVEYCRRNAVDDAFSLYEEMVRKG--VLPDVVTLSALVGGLCKDGRFSEAYALF 302

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
            +M   GA P+ +TY M+ + L K +R +E      E++
Sbjct: 303 REMEKIGAAPNHVTYCMLIDTLAKAQRGNESLSLLGEVV 341



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 111/244 (45%), Gaps = 15/244 (6%)

Query: 158 CGAGKYDEAVMSFDVMSMH-GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDP 215
           C  G+  + ++      M+ G+  D+   N+L+  +C     T +A+  L  +  + + P
Sbjct: 674 CSQGRRSDLILEIHEWMMNAGLCADITVYNTLVRVLC-YNGMTRKAMVVLEEMSGRGIAP 732

Query: 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK 275
           D  +F  L+ G  K G+++ A  T+ +M+  +     +V  + T L  L    ++ E+  
Sbjct: 733 DTITFNALILGHFKSGHLDNAFSTYDQML--YHGISPNVATFNTLLGGLESAGRIGESDM 790

Query: 276 FLRVMKGENCFPTLKFFSNALDILV----KLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA 331
            L  MK     P+   +    DILV    K ++   AV+L+  MVG GF  +P +  YNA
Sbjct: 791 VLNEMKKRGIEPSNLTY----DILVTGYGKQSNKVEAVRLYCEMVGKGF--LPKVSTYNA 844

Query: 332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
           +I        +      F++M   G  P S TY+++     K +   EV KF  +M +  
Sbjct: 845 LISDFSKVGMMSQAKELFNEMQNRGVLPTSCTYDILVSGWSKLRNGTEVRKFLKDMKEKG 904

Query: 392 WQPT 395
           + P+
Sbjct: 905 FSPS 908



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 85/421 (20%), Positives = 158/421 (37%), Gaps = 59/421 (14%)

Query: 68  IESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNG 127
           I+ +  C G     D+ HE+L                   G  ++ +  + +V+ L KNG
Sbjct: 461 IDGSFKCLGQEAALDVYHEMLC-----------------EGVEVNKFIVDSLVNGLKKNG 503

Query: 128 RFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN 186
           + E+     R M E GVL     + ++ D     G    A      ++   +  D V  N
Sbjct: 504 KIEKAEALFREMNERGVLLDHVNYTTLIDGLFKTGNLPAAFKVGQELTEKNLLPDAVVYN 563

Query: 187 SLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245
             ++ +C    ++  A  FL  ++   + PD  ++  ++    +EG   +A K    M +
Sbjct: 564 VFINCLC-MLGKSKEAESFLEEMQSTGLKPDQVTYNTMIAAQSREGKTAKALKLLNGM-K 621

Query: 246 RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS 305
           R    P +++ Y T ++ L     V++A   L  M      PT       L    +   S
Sbjct: 622 RSSIKP-NLITYSTLIVGLFEAGAVEKAKYLLNEMSSSGFSPTSLTHRRVLQACSQGRRS 680

Query: 306 THAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYN 365
              +++ + M+  G  L  ++ +YN ++ +LC N          ++M   G  PD++T+N
Sbjct: 681 DLILEIHEWMMNAG--LCADITVYNTLVRVLCYNGMTRKAMVVLEEMSGRGIAPDTITFN 738

Query: 366 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 425
            +     K+  +                                     A   ++ +L +
Sbjct: 739 ALILGHFKSGHLDN-----------------------------------AFSTYDQMLYH 763

Query: 426 GILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRD 485
           GI P  A+ N LL GL + GR+ +      EM  R I    +T   L   +  +S  +  
Sbjct: 764 GISPNVATFNTLLGGLESAGRIGESDMVLNEMKKRGIEPSNLTYDILVTGYGKQSNKVEA 823

Query: 486 I 486
           +
Sbjct: 824 V 824


>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
 gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 747

 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 94/443 (21%), Positives = 192/443 (43%), Gaps = 69/443 (15%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++N++++ L + GR +++   +  M   G  L   T+ ++   YC  G + +A++    M
Sbjct: 277 SYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEM 336

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
             HG+   V+   SL+ ++C+  N  +RA+EFL++++ + + P+  ++  L++G+ ++G 
Sbjct: 337 LRHGLTPSVITYTSLIHSMCKAGNM-NRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGY 395

Query: 233 VEEANKTFGEM----------------------------------VERFEWNPEHVLAYE 258
           + EA +   EM                                  ++    +P+ V++Y 
Sbjct: 396 MNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPD-VVSYS 454

Query: 259 TFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI 318
           T L    R   VDEAL+  R M  +   P    +S+ +    +   +  A  L++ M+ +
Sbjct: 455 TVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRV 514

Query: 319 GFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVH 378
           G  L P+   Y A+I   C   D++   +  ++MV  G  PD +TY+++   L K  R  
Sbjct: 515 G--LPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTR 572

Query: 379 EVEKFFHEMIKNEWQPTPLNCATAI---------------------TMLLDADEPEIAIE 417
           E ++   ++   E  P+ +   T I                      M+ +AD      +
Sbjct: 573 EAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEAD------Q 626

Query: 418 IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFY 477
           ++  +L     P   + N ++ G    G +       +EM+    L++ VT+  L KA +
Sbjct: 627 VFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALH 686

Query: 478 NESR--SMRDIFDSLERRCKTSQ 498
            E +   +  +   + R C+ S+
Sbjct: 687 KEGKVNELNSVIVHVLRSCELSE 709



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/403 (21%), Positives = 179/403 (44%), Gaps = 46/403 (11%)

Query: 110 RLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           ++SP  + +N+++      G  +        M+  G L ++ T+ ++ D YC   K D+ 
Sbjct: 200 QVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDG 259

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQE--NQTSRALEFLNRVKKIVDPDGDSFAILL 224
                 M++ G+E ++++ N +++ +CR+    + S  L  +NR  +    D  ++  L+
Sbjct: 260 FKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNR--RGYSLDEVTYNTLI 317

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           +G+ KEGN  +A     EM+ R    P  V+ Y + + ++ +   ++ A++FL  M+   
Sbjct: 318 KGYCKEGNFHQALVMHAEML-RHGLTPS-VITYTSLIHSMCKAGNMNRAMEFLDQMRVRG 375

Query: 285 CFPTLKFFSNALD-------------ILVKLNDSTH----------------------AV 309
             P  + ++  +D             +L ++ND+                        A+
Sbjct: 376 LCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAI 435

Query: 310 QLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFE 369
            + + M   G  L P+++ Y+ V+   C + DVD   R   +MV  G  PD++TY+ + +
Sbjct: 436 AVLEDMKEKG--LSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQ 493

Query: 370 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
              + +R  E    + EM++    P        I       + E A+++ N ++E G+LP
Sbjct: 494 GFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLP 553

Query: 430 LEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
              + + L+ GL    R  + +R   ++     +  +VT H L
Sbjct: 554 DVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTL 596



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 98/470 (20%), Positives = 187/470 (39%), Gaps = 60/470 (12%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQ-----------------RLSPYAWNLMVDV 122
           TP+    +L  S +  +  + F  WA   Q                 +L   A  L  DV
Sbjct: 47  TPEAASNLLLKSQNDQALILKFLNWANPHQFFTLRCKCITLHILTKFKLYKTAQILAEDV 106

Query: 123 LGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFD----SYCGAGKYDEAVMSFDVMSMHGV 178
             K    E      + ++E   L   T +S+FD    SY      D+A+    +   HG 
Sbjct: 107 AAKTLDDEYASLVFKSLQETYDLCYST-SSVFDLVVKSYSRLSLIDKALSIVHLAQAHGF 165

Query: 179 EQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
              V++ N++L A  R +   S A   F   ++  V P+  ++ IL+ G+   GN++ A 
Sbjct: 166 MPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVAL 225

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297
             F +M E     P +V+ Y T +    + +++D+  K LR M  +   P L  ++  ++
Sbjct: 226 TLFDKM-ETKGCLP-NVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVIN 283

Query: 298 -------------ILVKLNDSTHAVQ--LWDIMVG------------------IGFNLMP 324
                        +L ++N   +++    ++ ++                   +   L P
Sbjct: 284 GLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTP 343

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           ++I Y ++I  +C   +++    F DQM   G  P+  TY  + +   +   ++E  +  
Sbjct: 344 SVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVL 403

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
            EM  N + P+ +     I       + E AI +   + E G+ P   S + +L G    
Sbjct: 404 REMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRS 463

Query: 445 GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMR--DIFDSLER 492
             + +  R   EM+ + I    +T   L + F  + R+    D+++ + R
Sbjct: 464 YDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLR 513


>gi|357115347|ref|XP_003559450.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Brachypodium distachyon]
          Length = 1102

 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 95/400 (23%), Positives = 183/400 (45%), Gaps = 19/400 (4%)

Query: 67  DIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR-----GQRLSPYAWNLMVD 121
           ++   +A  GI+P+    + VL L++      V+   W  R     G + + Y++ + + 
Sbjct: 203 EVYKVMATDGIVPSVR-TYSVLMLAFGKRD--VETVVWLLREMEDHGVKPNVYSYTICIR 259

Query: 122 VLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQ 180
           VLG+ GRFE+ +  ++ M+++G    + T   +    C AG+  +A   F  M     + 
Sbjct: 260 VLGQAGRFEEAYKILQKMEDEGCKPDVVTNTVLIQILCDAGRVSDAKDVFWKMKASDQKP 319

Query: 181 DVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD---SFAILLEGWEKEGNVEEAN 237
           D V   +LL   C     +   +E  N +K   D   D   ++  +++   + G V+EA+
Sbjct: 320 DRVTYITLLDK-CGDNGDSRSVIEIWNAMK--ADGYNDNVVAYTAVVDALCQVGRVDEAS 376

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297
             F +M ++    P+   +Y + +   ++  +++ AL+    M      P    +   ++
Sbjct: 377 DVFDQMKQK-GIEPQQY-SYNSLISGFLKADRLNHALELFNHMNIHGPTPNGYTYVLFIN 434

Query: 298 ILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGA 357
              K  +S  A++ +++M   G  ++P+++  NAV+  L  +  +    R F ++   G 
Sbjct: 435 YYGKSGESLKAIKRYELMKSKG--IVPDVVAGNAVLYSLAKSGRLGMAKRVFHELKSIGV 492

Query: 358 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 417
            PD++TY M+ +C  K     E  K F EMI+    P  L   + I  L  A     A +
Sbjct: 493 CPDNITYTMMIKCCSKASNADEAMKVFSEMIETRCVPDVLAVNSLIDTLYKAGRGNEAWK 552

Query: 418 IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           I++ + E  + P + + N LL GL   G++ +V    EEM
Sbjct: 553 IFHELKEMNLDPTDCTYNTLLAGLGREGKVKEVMHLLEEM 592



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 116/475 (24%), Positives = 202/475 (42%), Gaps = 24/475 (5%)

Query: 33  HRPTRPRFPTHLDAPYISSSARIICEILAHASSDDI-ESALACTGIIPTPDLVHEVLQLS 91
            +P R  + T LD    +  +R + EI     +D   ++ +A T ++   D + +V ++ 
Sbjct: 317 QKPDRVTYITLLDKCGDNGDSRSVIEIWNAMKADGYNDNVVAYTAVV---DALCQVGRV- 372

Query: 92  YDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTF 150
            D  S   D  +   +G     Y++N ++    K  R          M   G   +  T+
Sbjct: 373 -DEASDVFDQMKQ--KGIEPQQYSYNSLISGFLKADRLNHALELFNHMNIHGPTPNGYTY 429

Query: 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK 210
               + Y  +G+  +A+  +++M   G+  DVVA N++L ++ +   +   A    + +K
Sbjct: 430 VLFINYYGKSGESLKAIKRYELMKSKGIVPDVVAGNAVLYSLAKS-GRLGMAKRVFHELK 488

Query: 211 KI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
            I V PD  ++ ++++   K  N +EA K F EM+E     P+ VLA  + + TL +  +
Sbjct: 489 SIGVCPDNITYTMMIKCCSKASNADEAMKVFSEMIET-RCVPD-VLAVNSLIDTLYKAGR 546

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY 329
            +EA K    +K  N  PT   ++  L  L +       + L + M    +   PNLI Y
Sbjct: 547 GNEAWKIFHELKEMNLDPTDCTYNTLLAGLGREGKVKEVMHLLEEMNSNSYP--PNLITY 604

Query: 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389
           N V+  LC N +V+        M   G  PD  +YN     L+K  R+ E  + F +M K
Sbjct: 605 NTVLDCLCKNGEVNYALGMLYNMTMKGCMPDLSSYNTALHGLVKEDRLTEAFRIFCQMKK 664

Query: 390 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 449
                    C    + + +    E    +  YIL+ G     +S + L+ G+     +  
Sbjct: 665 VLAPDYTTLCTILPSFVKNGLMNEALHTLKEYILQPGSKADRSSFHSLMEGILKRAGMEK 724

Query: 450 VRRFAEEMLNRRILIYEVTMHKL-------KKAFYNESRSMRDIFDSLERRCKTS 497
              FAE +   RIL+ +  +  L       KKA   E+  +   F+SL    KT 
Sbjct: 725 SIEFAENIALSRILLDDFFLSPLIRHLCKSKKAL--EAHELVKKFESLGVSLKTG 777



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 83/379 (21%), Positives = 171/379 (45%), Gaps = 19/379 (5%)

Query: 96  SSAVDFFRWAGRGQR------------LSPY--AWNLMVDVLGKNGRFEQMWNAVRVMKE 141
           +S +D    AGRG              L P    +N ++  LG+ G+ +++ + +  M  
Sbjct: 535 NSLIDTLYKAGRGNEAWKIFHELKEMNLDPTDCTYNTLLAGLGREGKVKEVMHLLEEMNS 594

Query: 142 DGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS 200
           +    +L T+ ++ D  C  G+ + A+     M+M G   D+ + N+ L  + + E++ +
Sbjct: 595 NSYPPNLITYNTVLDCLCKNGEVNYALGMLYNMTMKGCMPDLSSYNTALHGLVK-EDRLT 653

Query: 201 RALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF 260
            A     ++KK++ PD  +   +L  + K G + EA  T  E + +     +   ++ + 
Sbjct: 654 EAFRIFCQMKKVLAPDYTTLCTILPSFVKNGLMNEALHTLKEYILQPGSKADRS-SFHSL 712

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF 320
           +  +++   ++++++F   +          F S  +  L K   +  A +L      +G 
Sbjct: 713 MEGILKRAGMEKSIEFAENIALSRILLDDFFLSPLIRHLCKSKKALEAHELVKKFESLGV 772

Query: 321 NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEV 380
           +L      YNA+I  L + + +D     F +M   G  PD  TYN+I + + K+ R+ ++
Sbjct: 773 SLKTG--SYNALICGLVDENLIDVAEGLFSEMKRLGCDPDEFTYNLILDAMGKSMRIEDM 830

Query: 381 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 440
            K   EM    ++ T +   T I+ L+ +     A++++  ++  G  P   +   LL G
Sbjct: 831 LKVQKEMHCKGYESTYVTYNTIISGLVKSKMLYEAMDLYYKLMSEGFSPTPCTYGPLLDG 890

Query: 441 LRNLGRLSDVRRFAEEMLN 459
           L   G++ D     +EML+
Sbjct: 891 LLKDGKIEDAEDLFDEMLD 909



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 124/288 (43%), Gaps = 42/288 (14%)

Query: 114  YAWNLMVDVLGKNGRFEQM------------------WNAV------------------R 137
            + +NL++D +GK+ R E M                  +N +                  +
Sbjct: 812  FTYNLILDAMGKSMRIEDMLKVQKEMHCKGYESTYVTYNTIISGLVKSKMLYEAMDLYYK 871

Query: 138  VMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
            +M E    +  T+  + D     GK ++A   FD M  +G + +    N LL+   R   
Sbjct: 872  LMSEGFSPTPCTYGPLLDGLLKDGKIEDAEDLFDEMLDYGCKPNRAIYNILLNGY-RLAG 930

Query: 198  QTSRALE-FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
             T +  E F N V + ++PD  S+ +L+      G + ++   F ++ E     P+ ++ 
Sbjct: 931  NTEKVCELFQNMVDQGINPDIKSYTVLIGALCTAGRLNDSLSYFRQLTE-LGLEPD-LIT 988

Query: 257  YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
            Y   +  L R  +++EA+     M+     P L  +++ +  L K   +  A ++++ ++
Sbjct: 989  YNLLIHGLGRSGRLEEAVSLFNDMEKSGIAPNLYTYNSLILYLGKEGKAAEAGKMYEELL 1048

Query: 317  GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTY 364
              G+   PN+  YNA+IG    +   DN F  + QM+  G  P+S TY
Sbjct: 1049 KNGWK--PNVFTYNALIGGYSVSGSTDNAFASYGQMIVGGCPPNSSTY 1094



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 125/283 (44%), Gaps = 6/283 (2%)

Query: 177  GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEE 235
            GV     + N+L+  +   EN    A    + +K++  DPD  ++ ++L+   K   +E+
Sbjct: 771  GVSLKTGSYNALICGLV-DENLIDVAEGLFSEMKRLGCDPDEFTYNLILDAMGKSMRIED 829

Query: 236  ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
              K   EM    +      + Y T +  L++ K + EA+     +  E   PT   +   
Sbjct: 830  MLKVQKEM--HCKGYESTYVTYNTIISGLVKSKMLYEAMDLYYKLMSEGFSPTPCTYGPL 887

Query: 296  LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
            LD L+K      A  L+D M+  G    PN  +YN ++       + + V   F  MV  
Sbjct: 888  LDGLLKDGKIEDAEDLFDEMLDYGCK--PNRAIYNILLNGYRLAGNTEKVCELFQNMVDQ 945

Query: 356  GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 415
            G  PD  +Y ++   L    R+++   +F ++ +   +P  +     I  L  +   E A
Sbjct: 946  GINPDIKSYTVLIGALCTAGRLNDSLSYFRQLTELGLEPDLITYNLLIHGLGRSGRLEEA 1005

Query: 416  IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
            + ++N + ++GI P   + N L++ L   G+ ++  +  EE+L
Sbjct: 1006 VSLFNDMEKSGIAPNLYTYNSLILYLGKEGKAAEAGKMYEELL 1048



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/225 (20%), Positives = 91/225 (40%), Gaps = 3/225 (1%)

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
           Y   +  L++     EA++  +VM  +   P+++ +S  L +     D    V L   M 
Sbjct: 185 YNGLIYFLVKSGYDREAMEVYKVMATDGIVPSVRTYS-VLMLAFGKRDVETVVWLLREME 243

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
             G    PN+  Y   I +L      +  ++   +M   G  PD +T  ++ + L    R
Sbjct: 244 DHGVK--PNVYSYTICIRVLGQAGRFEEAYKILQKMEDEGCKPDVVTNTVLIQILCDAGR 301

Query: 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 436
           V + +  F +M  ++ +P  +   T +    D  +    IEIWN +  +G      +   
Sbjct: 302 VSDAKDVFWKMKASDQKPDRVTYITLLDKCGDNGDSRSVIEIWNAMKADGYNDNVVAYTA 361

Query: 437 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
           ++  L  +GR+ +     ++M  + I   + + + L   F    R
Sbjct: 362 VVDALCQVGRVDEASDVFDQMKQKGIEPQQYSYNSLISGFLKADR 406


>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Glycine max]
          Length = 623

 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 81/387 (20%), Positives = 167/387 (43%), Gaps = 36/387 (9%)

Query: 110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVM 168
           R S Y +N+M++VL K G+ ++    +  M+  GV  ++ T+ +I   +C  GK+  A +
Sbjct: 213 RSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRARV 272

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
            F  M   G+E D    NS +S +C++      +      ++  + P+  ++  L++G+ 
Sbjct: 273 IFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYC 332

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
            +G++++A     EM+ +       ++ Y  F+  L    ++ +A   ++ M+ +   P 
Sbjct: 333 NKGDLDKAYAYRDEMISKGIM--ASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPD 390

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFN--------------------------- 321
               +  ++   +  D+  A  L D MVG G                             
Sbjct: 391 AVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFS 450

Query: 322 ------LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 375
                 L+P++I++NA+I   C N ++D  F+   +M      PD +TYN + +   +  
Sbjct: 451 KIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREG 510

Query: 376 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 435
           +V E  +   EM +   +P  ++  T I+      + + A  + + ++  G  P   + N
Sbjct: 511 KVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYN 570

Query: 436 ELLVGLRNLGRLSDVRRFAEEMLNRRI 462
            L+ GL             +EM+++ I
Sbjct: 571 ALIQGLCKNQEGEHAEELLKEMVSKGI 597



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 142/335 (42%), Gaps = 7/335 (2%)

Query: 97  SAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFD 155
           + V F     +G     Y +N  +  L K GR E+    +  M E G++ +  T+ ++ D
Sbjct: 270 ARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALID 329

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVD 214
            YC  G  D+A    D M   G+   +V  N  + A+   E +   A   +  ++ K + 
Sbjct: 330 GYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALF-MEGRMGDADNMIKEMREKGMM 388

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           PD  +  IL+ G+ + G+ + A     EMV +    P  ++ Y + +  L +  ++ EA 
Sbjct: 389 PDAVTHNILINGYCRCGDAKRAFGLLDEMVGK-GIQPT-LVTYTSLIYVLGKRNRMKEAD 446

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
                ++ E   P +  F+  +D      +   A QL   M  +   ++P+ I YN ++ 
Sbjct: 447 ALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNM--KVLPDEITYNTLMQ 504

Query: 335 LLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
             C    V+   +  D+M   G  PD ++YN +     K   + +  +   EM+   + P
Sbjct: 505 GYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDP 564

Query: 395 TPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
           T L     I  L    E E A E+   ++  GI P
Sbjct: 565 TILTYNALIQGLCKNQEGEHAEELLKEMVSKGITP 599



 Score = 47.0 bits (110), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 50/242 (20%), Positives = 89/242 (36%), Gaps = 33/242 (13%)

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG-------F 320
           K+ +EAL+   ++K +   P ++  +  L + +KLN +  A  L+  M  +        F
Sbjct: 160 KKPNEALECFYLIKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYAEMFRMNIRSSLYTF 219

Query: 321 NLM--------------------------PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
           N+M                          PN++ YN +I   C           F  M  
Sbjct: 220 NIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKD 279

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 414
            G  PD  TYN     L K  R+ E      +M++    P  +     I    +  + + 
Sbjct: 280 KGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDK 339

Query: 415 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKK 474
           A    + ++  GI+    + N  +  L   GR+ D     +EM  + ++   VT + L  
Sbjct: 340 AYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILIN 399

Query: 475 AF 476
            +
Sbjct: 400 GY 401


>gi|357436823|ref|XP_003588687.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477735|gb|AES58938.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 587

 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 105/430 (24%), Positives = 188/430 (43%), Gaps = 30/430 (6%)

Query: 72  LACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYA--WNLMVDVLGKNGRF 129
           L  TGI PTP L+H V      SP      + WA       P +  ++ +++ L K   F
Sbjct: 95  LTQTGIKPTPPLLHAVFDHFASSPKLLHSLYLWALNQPGFKPDSSLFDSVINALAKMKEF 154

Query: 130 EQMWNAV------RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV 183
           +  W+ V          ++ ++S+ TFA I   Y  AG +  A+ +F+         D V
Sbjct: 155 DDAWSLVLDRIRRDDDDDEKLVSVGTFAIIIRRYARAGMHKAAIRTFEFAKDKKSIVDSV 214

Query: 184 AVNSL----LSAICRQENQTSRALEFLNRVKKIVD----PDGDSFAILLEGWEKEGNVEE 235
           +  SL    + ++C+ E     A E+L R +K  D    P    + I+L GW +   ++ 
Sbjct: 215 SEMSLFEILIDSLCK-EGSAREASEYLLR-RKETDLGWVPSIRVYNIMLNGWFRARKLKH 272

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
           A + + EM  + E     V+ Y T +    R ++V++AL+ +  M  E   P    ++  
Sbjct: 273 AERLWEEM--KNENVRPSVVTYGTLVEGYCRMRRVEKALEMVGEMTKEGIKPNAIVYNPI 330

Query: 296 LDILVKLNDSTHAVQLWDI--MVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
           +D L +      A+ + +   ++ IG    P L  YN+++   C   D++   +   +M+
Sbjct: 331 IDALAEAGRFKEALGMMERFHVLQIG----PTLSTYNSLVKGFCKAGDIEGASKILKKMI 386

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G  P   TYN  F    +  +V E    + +MI++   P  L     + ML + ++ E
Sbjct: 387 SRGFLPIPTTYNYFFRYFSRCGKVDEGMNLYTKMIESGHNPDRLTYHLVLKMLCEEEKLE 446

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK-- 471
           +A+++   +   G     A++  L   L  + +L +     E+M+ R I+   +T  K  
Sbjct: 447 LAVQVSMEMRHKGYDMDLATSTMLTHLLCKMHKLEEAFAEFEDMIRRGIIPQYLTFQKLN 506

Query: 472 --LKKAFYNE 479
             LKK   NE
Sbjct: 507 VELKKQGMNE 516



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/260 (22%), Positives = 112/260 (43%), Gaps = 10/260 (3%)

Query: 130 EQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLL 189
           E++W  ++   E+   S+ T+ ++ + YC   + ++A+     M+  G++ + +  N ++
Sbjct: 274 ERLWEEMK--NENVRPSVVTYGTLVEGYCRMRRVEKALEMVGEMTKEGIKPNAIVYNPII 331

Query: 190 SAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER-F 247
            A+  +  +   AL  + R   + + P   ++  L++G+ K G++E A+K   +M+ R F
Sbjct: 332 DALA-EAGRFKEALGMMERFHVLQIGPTLSTYNSLVKGFCKAGDIEGASKILKKMISRGF 390

Query: 248 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 307
              P     Y  F     R  +VDE +     M      P    +   L +L +      
Sbjct: 391 LPIPT---TYNYFFRYFSRCGKVDEGMNLYTKMIESGHNPDRLTYHLVLKMLCEEEKLEL 447

Query: 308 AVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMI 367
           AVQ+   M   G+++  +L     +  LLC    ++  F  F+ M+  G  P  LT+  +
Sbjct: 448 AVQVSMEMRHKGYDM--DLATSTMLTHLLCKMHKLEEAFAEFEDMIRRGIIPQYLTFQKL 505

Query: 368 FECLIKNKRVHEVEKFFHEM 387
              L K        K  H M
Sbjct: 506 NVELKKQGMNEMARKLCHLM 525


>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
 gi|224030695|gb|ACN34423.1| unknown [Zea mays]
 gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
          Length = 756

 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 95/438 (21%), Positives = 181/438 (41%), Gaps = 45/438 (10%)

Query: 95  PSSAVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFA 151
           P +A+     A   +  +P    +  ++  LG  G F+ M   VR M+ +G         
Sbjct: 69  PEAALQMLNSALAREDFAPSRAVYEEIIQKLGTAGAFDLMEGLVREMRREGHEAGAGVVR 128

Query: 152 SIFDSYCGAGKYDEAV------------------------------------MSFDVMSM 175
           S  +SY    ++D+AV                                      ++ M+ 
Sbjct: 129 SFVESYARLRRFDDAVDLVRNQLNTFGVQADTAVYNHLLNVLAEGSRMKLLESVYNEMTD 188

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEE 235
            G++ DVV +N+L+ A+CR     +  L         V PD  +F  L++G+ +EG++E 
Sbjct: 189 RGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEA 248

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
           A +   +M+E    +P  V      +    +  +V++AL +++    +   P    ++  
Sbjct: 249 ALRVKTKMMET-GCSPTRV-TVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTF 306

Query: 296 LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
           +  L +    +HA+++ D+M+  G +  P++  YN VI  L  N ++D      +QMV  
Sbjct: 307 VHCLCQNGHVSHALKVMDLMLQEGHD--PDVFTYNTVINCLSKNGELDEAKGIVNQMVDR 364

Query: 356 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 415
           G  PD+ T+N +   L    R+ E      E+      P        I  L    +P + 
Sbjct: 365 GCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLG 424

Query: 416 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKA 475
           I ++  +  +G  P E + N L+  L ++G+L +     +EM +       VT + +  A
Sbjct: 425 IRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDA 484

Query: 476 FYNESR--SMRDIFDSLE 491
              + R     ++FD ++
Sbjct: 485 LCKQMRIEEAEEVFDQMD 502



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 79/335 (23%), Positives = 145/335 (43%), Gaps = 6/335 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN- 207
           T   + + YC  G+ ++A+         G E D V  N+ +  +C Q    S AL+ ++ 
Sbjct: 267 TVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLC-QNGHVSHALKVMDL 325

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            +++  DPD  ++  ++    K G ++EA     +MV+R    P+    + T ++ L   
Sbjct: 326 MLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDR-GCLPD-TTTFNTLIVALCSQ 383

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
            +++EAL   R +  +   P +  F+  ++ L K+ D    ++L++ M   G    P+ +
Sbjct: 384 NRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSG--CAPDEV 441

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            YN +I  LC+   + N      +M  +G    ++TYN I + L K  R+ E E+ F +M
Sbjct: 442 TYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQM 501

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
             +    + +   T I  L  A   + A E+   +++ G+ P   + N +L      G L
Sbjct: 502 DAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGDL 561

Query: 448 SDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 482
                  E M      I  VT   L        R+
Sbjct: 562 KKAADILETMTANGFEIDVVTYGTLINGLCKAGRT 596



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/344 (23%), Positives = 143/344 (41%), Gaps = 7/344 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N  V  L +NG        + +M ++G    + T+ ++ +     G+ DEA    + M 
Sbjct: 303 YNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMV 362

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNV 233
             G   D    N+L+ A+C Q N+   AL+    +  K + PD  +F IL+    K G+ 
Sbjct: 363 DRGCLPDTTTFNTLIVALCSQ-NRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDP 421

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
               + F EM +     P+ V  Y   +  L    ++  AL  L+ M+   C  +   ++
Sbjct: 422 HLGIRLFEEM-KSSGCAPDEV-TYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYN 479

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +D L K      A +++D M   G +   + + +N +I  LC    +D+     +QMV
Sbjct: 480 TIIDALCKQMRIEEAEEVFDQMDAHGIS--RSAVTFNTLIDGLCKAKRIDDATELIEQMV 537

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G  P ++TYN I     K   + +       M  N ++   +   T I  L  A   +
Sbjct: 538 KEGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQ 597

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           +A+++   +   GI P   + N ++  L     L D      EM
Sbjct: 598 VALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALSLFREM 641



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/351 (23%), Positives = 143/351 (40%), Gaps = 10/351 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +N +++ L KNG  ++    V  M + G L    TF ++  + C   + +EA+     
Sbjct: 336 FTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARE 395

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           +++ G+  DV   N L++A+C+  +       F         PD  ++ IL++     G 
Sbjct: 396 LTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGK 455

Query: 233 VEEANKTFGEMVERFEWN--PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           +  A     EM    E N  P   + Y T +  L +  +++EA +    M       +  
Sbjct: 456 LVNALDLLKEM----ESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAV 511

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
            F+  +D L K      A +L + MV  G  L P+ I YN+++   C   D+       +
Sbjct: 512 TFNTLIDGLCKAKRIDDATELIEQMVKEG--LQPSNITYNSILTHYCKQGDLKKAADILE 569

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
            M  +G   D +TY  +   L K  R     K    M     +PTP      I  L   +
Sbjct: 570 TMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRN 629

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGL-RNLGRLSDVRRFAEEMLNR 460
               A+ ++  + E G  P   +   +  GL R  G + +   F  EM+N+
Sbjct: 630 NLRDALSLFREMTEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFLVEMVNK 680



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 96/433 (22%), Positives = 174/433 (40%), Gaps = 44/433 (10%)

Query: 98  AVDFFR--WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           AVD  R      G +     +N +++VL +  R + + +    M + G+   + T  ++ 
Sbjct: 143 AVDLVRNQLNTFGVQADTAVYNHLLNVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNTLI 202

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-V 213
            + C A +   AV+  + MS H V  D     +L+     +E     AL    ++ +   
Sbjct: 203 KALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFI-EEGSIEAALRVKTKMMETGC 261

Query: 214 DPDGDSFAILLEGWEKEGNVEEA-NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
            P   +  +L+ G+ K G VE+A      E+ + FE  P+ V  Y TF+  L +   V  
Sbjct: 262 SPTRVTVNVLINGYCKMGRVEDALGYIQKEIADGFE--PDQV-TYNTFVHCLCQNGHVSH 318

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG-------FN---- 321
           ALK + +M  E   P +  ++  ++ L K  +   A  + + MV  G       FN    
Sbjct: 319 ALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIV 378

Query: 322 ----------------------LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFP 359
                                 L P++  +N +I  LC   D     R F++M   G  P
Sbjct: 379 ALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAP 438

Query: 360 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 419
           D +TYN++ + L    ++        EM  N    + +   T I  L      E A E++
Sbjct: 439 DEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVF 498

Query: 420 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 479
           + +  +GI     + N L+ GL    R+ D     E+M+   +    +T + +   +  +
Sbjct: 499 DQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQ 558

Query: 480 S--RSMRDIFDSL 490
              +   DI +++
Sbjct: 559 GDLKKAADILETM 571



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 44/234 (18%), Positives = 91/234 (38%), Gaps = 2/234 (0%)

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           LL    ++ + E A +     + R ++ P   + YE  +  L      D     +R M+ 
Sbjct: 59  LLTALREQADPEAALQMLNSALAREDFAPSRAV-YEEIIQKLGTAGAFDLMEGLVREMRR 117

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
           E          + ++   +L     AV L    +   F +  +  +YN ++ +L     +
Sbjct: 118 EGHEAGAGVVRSFVESYARLRRFDDAVDLVRNQLNT-FGVQADTAVYNHLLNVLAEGSRM 176

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
             +   +++M   G  PD +T N + + L +  +V        EM  +   P      T 
Sbjct: 177 KLLESVYNEMTDRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTL 236

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 456
           +   ++    E A+ +   ++E G  P   + N L+ G   +GR+ D   + ++
Sbjct: 237 MQGFIEEGSIEAALRVKTKMMETGCSPTRVTVNVLINGYCKMGRVEDALGYIQK 290


>gi|297802850|ref|XP_002869309.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315145|gb|EFH45568.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1114

 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 141/312 (45%), Gaps = 42/312 (13%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL----------------------------- 145
            + ++VD L K G F + +  + VM++ G+L                             
Sbjct: 367 TFTILVDALCKAGNFGEAFAKLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALEIFDNM 426

Query: 146 -------SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198
                  +  T+    D Y  +G    A+ +F+ M   G+  ++VA N+ L ++ +   +
Sbjct: 427 ESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKA-GR 485

Query: 199 TSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
              A +    +K I + PD  ++ ++++ + K G ++EA K   EMVE     P+ V+  
Sbjct: 486 DREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMVENC-CEPD-VIVV 543

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317
            + + TL +  +VDEA K    MK     PT+  ++  L  L K      A++L++ MV 
Sbjct: 544 NSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQ 603

Query: 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
            G    PN I +N +   LC ND+V    +   +M+  G  PD  TYN I   L+KN +V
Sbjct: 604 KG--CPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQV 661

Query: 378 HEVEKFFHEMIK 389
            E   FFH+M K
Sbjct: 662 KEAMCFFHQMKK 673



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 91/360 (25%), Positives = 164/360 (45%), Gaps = 17/360 (4%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G + + Y + + + VLG+ G+  + +  ++ M ++G    + T+  + D+ C A K D A
Sbjct: 255 GLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCA 314

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD-----SFA 221
              F  M     + D V   +LL          +R L+ +N+    ++ DG      +F 
Sbjct: 315 KEVFAKMKTGRHKPDRVTYITLLDRF-----SDNRDLDSVNQFWSEMEKDGHVPDVVTFT 369

Query: 222 ILLEGWEKEGNVEEANKTFGEM-VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
           IL++   K GN  EA   F ++ V R +    ++  Y T +  L+R  ++D+AL+    M
Sbjct: 370 ILVDALCKAGNFGEA---FAKLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALEIFDNM 426

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
           +     PT   +   +D   K  DS  A++ ++ M   G  + PN++  NA +  L    
Sbjct: 427 ESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKG--IAPNIVACNASLYSLAKAG 484

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
                 + F  +   G  PDS+TYNM+ +C  K   + E  K   EM++N  +P  +   
Sbjct: 485 RDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMVENCCEPDVIVVN 544

Query: 401 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           + I  L  AD  + A +++  + E  + P   + N LL GL   G++ +     E M+ +
Sbjct: 545 SLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQK 604



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 168/372 (45%), Gaps = 18/372 (4%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMS---- 169
            +N ++  LGKNG+ ++       M + G   +  TF ++FD  C   K DE  ++    
Sbjct: 577 TYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLC---KNDEVTLALKML 633

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK 229
           F +M M G   DV   N+++  + +   Q   A+ F +++KK+V PD  +   LL G  K
Sbjct: 634 FKMMDM-GCVPDVFTYNTIIFGLVKN-GQVKEAMCFFHQMKKLVYPDFVTLCTLLPGVVK 691

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL-RVMKGENCFPT 288
            G +E+A K     +      P + L +E  + +++    +D A+ F  R++    C   
Sbjct: 692 AGLIEDAYKIIANFLYSCADQPAN-LFWEDLMGSILAEAGIDNAVSFSERLVANGICRDG 750

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
                  +    K N+++ A  L++        + P L  YN +IG L   D ++     
Sbjct: 751 DSILVPIIRYSFKHNNASGARMLFEKFTK-DLGVQPKLPTYNLLIGGLLEADMIEIAQDV 809

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
           F Q+   G  PD  TYN + +   K+ ++ E+ + + EM  +E +P  +     I+ L+ 
Sbjct: 810 FLQVKNTGCIPDVATYNFLLDAYGKSGKIDELFEIYKEMSAHECEPNTITHNIVISGLVK 869

Query: 409 ADEPEIAIEI-WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR----RIL 463
           A   + A+++ ++ + +    P   +   L+ GL   GRL + ++  E M +        
Sbjct: 870 AGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPNCA 929

Query: 464 IYEVTMHKLKKA 475
           IY + ++   KA
Sbjct: 930 IYNILINGFGKA 941



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 87/391 (22%), Positives = 160/391 (40%), Gaps = 17/391 (4%)

Query: 59   ILAHASSDDIES---ALACTGIIPTPD-LVHEVLQLSY--DSPSSAVDFFRWAGRGQRLS 112
            ILA A  D+  S    L   GI    D ++  +++ S+  ++ S A   F    +   + 
Sbjct: 725  ILAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSFKHNNASGARMLFEKFTKDLGVQ 784

Query: 113  PY--AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMS 169
            P    +NL++  L +    E   +    +K  G +  + T+  + D+Y  +GK DE    
Sbjct: 785  PKLPTYNLLIGGLLEADMIEIAQDVFLQVKNTGCIPDVATYNFLLDAYGKSGKIDELFEI 844

Query: 170  FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD--PDGDSFAILLEGW 227
            +  MS H  E + +  N ++S + +  N    AL+    +    D  P   ++  L++G 
Sbjct: 845  YKEMSAHECEPNTITHNIVISGLVKAGN-VDDALDLYYDLMSDRDFSPTACTYGPLIDGL 903

Query: 228  EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
             K G + EA + F E +  +   P   + Y   +    +  + D A    + M  E   P
Sbjct: 904  SKSGRLYEAKQLF-EGMSDYGCRPNCAI-YNILINGFGKAGEADAACALFKRMVKEGVRP 961

Query: 288  TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFR 347
             LK +S  +D L  +      +  +  +   G N  P+++ YN +I  L     ++    
Sbjct: 962  DLKTYSVLVDCLCMVGRVDEGLHYFRELKESGLN--PDVVCYNLIINGLGKFHRLEEALV 1019

Query: 348  FFDQMV-FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406
             F++M    G  PD  TYN +   L     V E  K ++E+ +   +P        I   
Sbjct: 1020 LFNEMKKSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGY 1079

Query: 407  LDADEPEIAIEIWNYILENGILPLEASANEL 437
              + +PE A  ++  ++  G  P   +  +L
Sbjct: 1080 SLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1110



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 110/245 (44%), Gaps = 6/245 (2%)

Query: 215  PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
            PD  ++  LL+ + K G ++E  + + EM    E  P + + +   +  L++   VD+AL
Sbjct: 820  PDVATYNFLLDAYGKSGKIDELFEIYKEMSAH-ECEP-NTITHNIVISGLVKAGNVDDAL 877

Query: 275  K-FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
              +  +M   +  PT   +   +D L K      A QL++ M   G    PN  +YN +I
Sbjct: 878  DLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCR--PNCAIYNILI 935

Query: 334  GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
                   + D     F +MV  G  PD  TY+++ +CL    RV E   +F E+ ++   
Sbjct: 936  NGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFRELKESGLN 995

Query: 394  PTPLNCATAITMLLDADEPEIAIEIWNYILEN-GILPLEASANELLVGLRNLGRLSDVRR 452
            P  +     I  L      E A+ ++N + ++ GI P   + N L++ L   G + +  +
Sbjct: 996  PDVVCYNLIINGLGKFHRLEEALVLFNEMKKSRGITPDLYTYNSLILNLGIAGMVEEAGK 1055

Query: 453  FAEEM 457
               E+
Sbjct: 1056 IYNEI 1060



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 151/356 (42%), Gaps = 13/356 (3%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD-- 164
           G  L+ Y++N ++ +L K+    +     R M  DG   SL T++S+     G GK    
Sbjct: 185 GFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILDGFRPSLQTYSSLM---VGLGKRRDI 241

Query: 165 EAVMSF-DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAI 222
           E+VM     M   G++ +V      +  + R   + + A E L R+  +   PD  ++ +
Sbjct: 242 ESVMGLLKEMETLGLKPNVYTFTICIRVLGRA-GKINEAYEILKRMDDEGCGPDVVTYTV 300

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L++       ++ A + F +M +     P+ V  Y T L      + +D   +F   M+ 
Sbjct: 301 LIDALCTARKLDCAKEVFAKM-KTGRHKPDRV-TYITLLDRFSDNRDLDSVNQFWSEMEK 358

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
           +   P +  F+  +D L K  +   A    D+M   G  ++PNL  YN +I  L     +
Sbjct: 359 DGHVPDVVTFTILVDALCKAGNFGEAFAKLDVMRDQG--ILPNLHTYNTLICGLLRVHRL 416

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
           D+    FD M   G  P + TY +  +   K+       + F +M      P  + C  +
Sbjct: 417 DDALEIFDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNAS 476

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
           +  L  A     A +I+  + + G++P   + N ++     +G + +  +   EM+
Sbjct: 477 LYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMV 532



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 65/304 (21%), Positives = 117/304 (38%), Gaps = 13/304 (4%)

Query: 164  DEAVMSFDVMSMHGVEQDVVAVNSLLSAICR---QENQTSRALEFLNRVKK--IVDPDGD 218
            D AV   + +  +G+ +D    +S+L  I R   + N  S A     +  K   V P   
Sbjct: 732  DNAVSFSERLVANGICRDG---DSILVPIIRYSFKHNNASGARMLFEKFTKDLGVQPKLP 788

Query: 219  SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
            ++ +L+ G  +   +E A   F + V+     P+ V  Y   L    +  ++DE  +  +
Sbjct: 789  TYNLLIGGLLEADMIEIAQDVFLQ-VKNTGCIPD-VATYNFLLDAYGKSGKIDELFEIYK 846

Query: 279  VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW-DIMVGIGFNLMPNLIMYNAVIGLLC 337
             M    C P     +  +  LVK  +   A+ L+ D+M    F+  P    Y  +I  L 
Sbjct: 847  EMSAHECEPNTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFS--PTACTYGPLIDGLS 904

Query: 338  NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
             +  +    + F+ M  +G  P+   YN++     K          F  M+K   +P   
Sbjct: 905  KSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLK 964

Query: 398  NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
              +  +  L      +  +  +  + E+G+ P     N ++ GL    RL +      EM
Sbjct: 965  TYSVLVDCLCMVGRVDEGLHYFRELKESGLNPDVVCYNLIINGLGKFHRLEEALVLFNEM 1024

Query: 458  LNRR 461
               R
Sbjct: 1025 KKSR 1028


>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04760, chloroplastic; Flags: Precursor
 gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
 gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
 gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
 gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 602

 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 90/409 (22%), Positives = 168/409 (41%), Gaps = 45/409 (11%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           R +  SP    +N+M+  L   G+ +     +  +  D    ++ T+  + ++    G  
Sbjct: 185 RSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGV 244

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAI 222
           DEA+   D M   G++ D+   N+++  +C+ E    RA E +  ++ K  +PD  S+ I
Sbjct: 245 DEALKLMDEMLSRGLKPDMFTYNTIIRGMCK-EGMVDRAFEMVRNLELKGCEPDVISYNI 303

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           LL     +G  EE  K   +M    E    +V+ Y   + TL R  +++EA+  L++MK 
Sbjct: 304 LLRALLNQGKWEEGEKLMTKMFS--EKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKE 361

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
           +   P    +   +    +      A++  + M+  G   +P+++ YN V+  LC N   
Sbjct: 362 KGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDG--CLPDIVNYNTVLATLCKNGKA 419

Query: 343 DNVFRFFD-----------------------------------QMVFHGAFPDSLTYNMI 367
           D     F                                    +M+ +G  PD +TYN +
Sbjct: 420 DQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSM 479

Query: 368 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 427
             CL +   V E  +   +M   E+ P+ +     +     A   E AI +   ++ NG 
Sbjct: 480 ISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGC 539

Query: 428 LPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
            P E +   L+ G+   G  ++    A +++ R   I E +  +L + F
Sbjct: 540 RPNETTYTVLIEGIGFAGYRAEAMELANDLV-RIDAISEYSFKRLHRTF 587



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 138/307 (44%), Gaps = 5/307 (1%)

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI 212
           IF   C +G Y E++   + M   G   DV+    L+       N   +A+  +  ++K 
Sbjct: 95  IFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRN-IPKAVRVMEILEKF 153

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
             PD  ++  L+ G+ K   +++A +    M  + +++P+ V  Y   + +L    ++D 
Sbjct: 154 GQPDVFAYNALINGFCKMNRIDDATRVLDRMRSK-DFSPDTV-TYNIMIGSLCSRGKLDL 211

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAV 332
           ALK L  +  +NC PT+  ++  ++  +       A++L D M+  G  L P++  YN +
Sbjct: 212 ALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRG--LKPDMFTYNTI 269

Query: 333 IGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 392
           I  +C    VD  F     +   G  PD ++YN++   L+   +  E EK   +M   + 
Sbjct: 270 IRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKC 329

Query: 393 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 452
            P  +  +  IT L    + E A+ +   + E G+ P   S + L+      GRL     
Sbjct: 330 DPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIE 389

Query: 453 FAEEMLN 459
           F E M++
Sbjct: 390 FLETMIS 396



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 150/350 (42%), Gaps = 9/350 (2%)

Query: 135 AVRVMK---EDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
           AVRVM+   + G   +  + ++ + +C   + D+A    D M       D V  N ++ +
Sbjct: 143 AVRVMEILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGS 202

Query: 192 ICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
           +C +  +   AL+ LN+ +     P   ++ IL+E    EG V+EA K   EM+ R    
Sbjct: 203 LCSR-GKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSR-GLK 260

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P+ +  Y T +  + +   VD A + +R ++ + C P +  ++  L  L+         +
Sbjct: 261 PD-MFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEK 319

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
           L   M     +  PN++ Y+ +I  LC +  ++        M   G  PD+ +Y+ +   
Sbjct: 320 LMTKMFSEKCD--PNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAA 377

Query: 371 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 430
             +  R+    +F   MI +   P  +N  T +  L    + + A+EI+  + E G  P 
Sbjct: 378 FCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPN 437

Query: 431 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 480
            +S N +   L + G          EM++  I   E+T + +      E 
Sbjct: 438 SSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREG 487



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 105/239 (43%), Gaps = 17/239 (7%)

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG----KQVDEALKFLRVMK--G 282
           + GN  E+      MV R  +NP+ +L  +     LI+G    + + +A++ + +++  G
Sbjct: 101 RSGNYIESLHLLETMV-RKGYNPDVILCTK-----LIKGFFTLRNIPKAVRVMEILEKFG 154

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
           +   P +  ++  ++   K+N    A ++ D M    F+  P+ + YN +IG LC+   +
Sbjct: 155 Q---PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFS--PDTVTYNIMIGSLCSRGKL 209

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
           D   +  +Q++     P  +TY ++ E  +    V E  K   EM+    +P      T 
Sbjct: 210 DLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTI 269

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461
           I  +      + A E+   +   G  P   S N LL  L N G+  +  +   +M + +
Sbjct: 270 IRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEK 328


>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
 gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
          Length = 1115

 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 87/384 (22%), Positives = 169/384 (44%), Gaps = 39/384 (10%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N+++  LGK G+ ++       M   G   +  TF ++ D  C   + D A+  F  M
Sbjct: 581 TYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKM 640

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
           +      DV+  N+++    +Q NQ   A+   +++KK++ PD  +   LL G  K G +
Sbjct: 641 TTMNCRPDVLTFNTIIHGFIKQ-NQIKNAIWLFHQMKKLLRPDHVTLCTLLPGVIKSGQI 699

Query: 234 EEANK-------TFGEMVERFEW-----------NPEHVLAYETFLI------------- 262
           E+A +         G  ++R  W             E  + +   L+             
Sbjct: 700 EDAFRITEDFFYQVGSNIDRSFWEDVMGGILTEAGTEKAILFGERLVCRAICKDDSVLIP 759

Query: 263 ---TLIRGKQVDEALK-FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI 318
               L + K+   A   F++  K     PTLK ++  +D  +++++   A  L++ M   
Sbjct: 760 IIKVLCKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSA 819

Query: 319 GFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVH 378
           G    P+   YN++I     +  ++ +F  +D+M+  G  P+++TYNM+   L+K+ R+ 
Sbjct: 820 G--CAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLD 877

Query: 379 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 438
           +    ++ ++  ++ PTP      I  LL +   + A E+++ ++  G  P  A  N L+
Sbjct: 878 KAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILV 937

Query: 439 VGLRNLGRLSDVRRFAEEMLNRRI 462
            G   LG +     F + M+   I
Sbjct: 938 NGYGKLGHVDTACEFFKRMVKEGI 961



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 159/359 (44%), Gaps = 21/359 (5%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G R + Y + + + VLG++G+ ++ +  ++ M +DG    + T+  + D+ C A K D+A
Sbjct: 259 GLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDA 318

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI--------VDPDGD 218
           +  F  M     + D V   +LL       +        L++V+KI          PD  
Sbjct: 319 MCLFTKMKSSSHKPDKVTYVTLLDKFSDCGH--------LDKVEKIWTEMEADGYAPDVV 370

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           +F IL+    K G + EA      M  R +    ++  Y T +  L+R  ++D+AL    
Sbjct: 371 TFTILVNALCKAGRINEAFDLLDTM--RKQGVLPNLHTYNTLISGLLRANRLDDALDLFS 428

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            M+     PT   +   +D   K      A++ ++ M   G  + PN++  NA +  L  
Sbjct: 429 NMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARG--IAPNIVACNASLYSLAE 486

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
              +      F+++   G  PDS+TYNM+ +C  K  +V E  K   EM K + +P  + 
Sbjct: 487 MGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIV 546

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
             + I  L  A   E A +++  + E  + P   + N LL GL   G++    +  E M
Sbjct: 547 INSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESM 605



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 157/344 (45%), Gaps = 8/344 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            + ++V+ L K GR  + ++ +  M++ GVL +L T+ ++      A + D+A+  F  M
Sbjct: 371 TFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNM 430

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
              GVE        LL     +     +ALE   ++K + + P+  +    L    + G 
Sbjct: 431 ESLGVEPTAYTY-ILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGR 489

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           + EA   F E+ +     P+ V  Y   +    +  QVDEA+K L  M    C P +   
Sbjct: 490 LGEAKAMFNEL-KSSGLAPDSV-TYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVI 547

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           ++ +D L K      A Q++  M  +  NL P ++ YN ++  L     +    + F+ M
Sbjct: 548 NSLIDTLYKAGRVEEAWQMFCRMEEM--NLAPTVVTYNILLAGLGKEGQIQKAVQLFESM 605

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
             HG  P+++T+N + +CL KN  V    K F++M     +P  L   T I   +  ++ 
Sbjct: 606 NGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTMNCRPDVLTFNTIIHGFIKQNQI 665

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 456
           + AI +++  ++  + P   +   LL G+   G++ D  R  E+
Sbjct: 666 KNAIWLFHQ-MKKLLRPDHVTLCTLLPGVIKSGQIEDAFRITED 708



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 91/444 (20%), Positives = 184/444 (41%), Gaps = 23/444 (5%)

Query: 47  PYISSSARIICEILAHASSDDIESALACTGIIPTPDLVH---------EVLQLSYDSPSS 97
           P   SS+  +  +L H+ SD I +      +   P++VH         E+L++       
Sbjct: 85  PRKGSSSDEVLGVL-HSISDPIHALFYFKSVGELPNVVHTTETCNHMLEILRVHRRVEDM 143

Query: 98  AVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDS 156
           A  F     +  R +   + ++   L   G   Q  +A+  M+E G VL+  ++  +   
Sbjct: 144 AFVFDLMQRQIIRRNVDTYLIIFKSLFIRGGLRQAPSALEKMREAGFVLNAYSYNGLIHF 203

Query: 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDP 215
              +G   EA+  +  M   G++  +   ++L+ A  ++ N  +  +  L  ++ + + P
Sbjct: 204 LLQSGFCKEALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKT-VMGLLEEMESMGLRP 262

Query: 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK 275
           +  ++ I +    ++G ++EA +    M +     P+ V+ Y   +  L   +++D+A+ 
Sbjct: 263 NIYTYTICIRVLGRDGKIDEAYRIMKRMDDD-GCGPD-VVTYTVLIDALCTARKLDDAMC 320

Query: 276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTH---AVQLWDIMVGIGFNLMPNLIMYNAV 332
               MK  +  P    +   LD   K +D  H     ++W  M   G+   P+++ +  +
Sbjct: 321 LFTKMKSSSHKPDKVTYVTLLD---KFSDCGHLDKVEKIWTEMEADGY--APDVVTFTIL 375

Query: 333 IGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 392
           +  LC    ++  F   D M   G  P+  TYN +   L++  R+ +    F  M     
Sbjct: 376 VNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGV 435

Query: 393 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 452
           +PT       I     +  P  A+E +  +   GI P   + N  L  L  +GRL + + 
Sbjct: 436 EPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKA 495

Query: 453 FAEEMLNRRILIYEVTMHKLKKAF 476
              E+ +  +    VT + + K +
Sbjct: 496 MFNELKSSGLAPDSVTYNMMMKCY 519



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 108/243 (44%), Gaps = 4/243 (1%)

Query: 215  PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
            PD  ++  L++   K G + E    + EM+ R      + + Y   +  L++  ++D+A+
Sbjct: 823  PDTFTYNSLIDAHGKSGKINELFDLYDEMLTR--GCKPNTITYNMVISNLVKSNRLDKAM 880

Query: 275  KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
                 +   +  PT   F   +D L+K      A +++D MV  G    PN  +YN ++ 
Sbjct: 881  DLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCR--PNSAIYNILVN 938

Query: 335  LLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
                   VD    FF +MV  G  PD  +Y ++ + L    RV +   +F ++ +    P
Sbjct: 939  GYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDP 998

Query: 395  TPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 454
              +     I  L  +   E A+ +++ +   GI+P   + N L++ L  +G + +  +  
Sbjct: 999  DLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIY 1058

Query: 455  EEM 457
            EE+
Sbjct: 1059 EEL 1061



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/317 (21%), Positives = 127/317 (40%), Gaps = 40/317 (12%)

Query: 114  YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            + +N ++D  GK+G+  ++++                            YDE       M
Sbjct: 826  FTYNSLIDAHGKSGKINELFDL---------------------------YDE-------M 851

Query: 174  SMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAILLEGWEKEGN 232
               G + + +  N ++S + +  N+  +A++ + N V     P   +F  L++G  K G 
Sbjct: 852  LTRGCKPNTITYNMVISNLVKS-NRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGR 910

Query: 233  VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
            +++A++ F  MV  +   P   + Y   +    +   VD A +F + M  E   P LK +
Sbjct: 911  LDDAHEMFDGMVH-YGCRPNSAI-YNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSY 968

Query: 293  SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
            +  +DIL        A+  ++ +   G +  P+L+ YN +I  L  +   +     F +M
Sbjct: 969  TILVDILCIAGRVDDALHYFEKLKQAGLD--PDLVAYNLMINGLGRSQRTEEALSLFHEM 1026

Query: 353  VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
               G  PD  TYN +   L     + E  K + E+     +P        I     +   
Sbjct: 1027 QNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNALIRGYTLSGNS 1086

Query: 413  EIAIEIWNYILENGILP 429
            E+A  I+  ++  G  P
Sbjct: 1087 ELAYGIYKKMMVGGCDP 1103



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 122/260 (46%), Gaps = 7/260 (2%)

Query: 107  RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDE 165
            RG + +   +N+++  L K+ R ++  +    +        P TF  + D    +G+ D+
Sbjct: 854  RGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDD 913

Query: 166  AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILL 224
            A   FD M  +G   +    N L++   +       A EF  R VK+ + PD  S+ IL+
Sbjct: 914  AHEMFDGMVHYGCRPNSAIYNILVNGYGKL-GHVDTACEFFKRMVKEGIRPDLKSYTILV 972

Query: 225  EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            +     G V++A   F E +++   +P+ ++AY   +  L R ++ +EAL     M+   
Sbjct: 973  DILCIAGRVDDALHYF-EKLKQAGLDPD-LVAYNLMINGLGRSQRTEEALSLFHEMQNRG 1030

Query: 285  CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
              P L  +++ +  L  +     A ++++ +  IG  L PN+  YNA+I     + + + 
Sbjct: 1031 IVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIG--LKPNVFTYNALIRGYTLSGNSEL 1088

Query: 345  VFRFFDQMVFHGAFPDSLTY 364
             +  + +M+  G  P++ T+
Sbjct: 1089 AYGIYKKMMVGGCDPNTGTF 1108



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/301 (20%), Positives = 127/301 (42%), Gaps = 5/301 (1%)

Query: 164  DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAI 222
            ++A++  + +    + +D   +  ++  +C+ +  +     F+   K++ V P    + +
Sbjct: 736  EKAILFGERLVCRAICKDDSVLIPIIKVLCKHKKTSVARNVFVKFTKELGVKPTLKVYNL 795

Query: 223  LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
            L++G+ +  NVE A   F EM  +          Y + +    +  +++E       M  
Sbjct: 796  LIDGFLEVHNVEVAWNLFEEM--KSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLT 853

Query: 283  ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
              C P    ++  +  LVK N    A+ L+  +V   F+  P    +  +I  L  +  +
Sbjct: 854  RGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFS--PTPCTFGPLIDGLLKSGRL 911

Query: 343  DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
            D+    FD MV +G  P+S  YN++     K   V    +FF  M+K   +P   +    
Sbjct: 912  DDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTIL 971

Query: 403  ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
            + +L  A   + A+  +  + + G+ P   + N ++ GL    R  +      EM NR I
Sbjct: 972  VDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGI 1031

Query: 463  L 463
            +
Sbjct: 1032 V 1032


>gi|255565812|ref|XP_002523895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536825|gb|EEF38464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 784

 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 92/355 (25%), Positives = 158/355 (44%), Gaps = 12/355 (3%)

Query: 81  PDLV--HEVLQLSYDSPSSAVDFF---RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNA 135
           PD+V  + ++   +D  SS   F    +  G+G + +   +N++V    K G+ +   N 
Sbjct: 350 PDVVTYNTLINGCFDCSSSLKGFELIDKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNE 409

Query: 136 VRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194
           +R M+E G      TF ++ + YC AG+  EA    D MS  G++ + V +N++L  +C 
Sbjct: 410 LRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLC- 468

Query: 195 QENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH 253
            E +   A + L+   K+    D  S+  L+ G+ K+G   EA K + EM E+ E  P  
Sbjct: 469 GERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEK-EIIPS- 526

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
           ++ Y T +  L    + D+++  L  +      P    ++  +    +      A Q  +
Sbjct: 527 IITYNTMIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNTIILGYCREGQVEKAFQFHN 586

Query: 314 IMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 373
            MV   F   P+L   N ++  LC    +D   + F+  +  G   D++TYN I   L K
Sbjct: 587 KMVKKSFK--PDLFTCNILLRGLCTEGMLDKALKLFNTWISKGKAIDAVTYNTIISGLCK 644

Query: 374 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 428
             R  E      EM + +  P        ++ L DA   + A E  + I+E G L
Sbjct: 645 EDRFEEAFDLLAEMEEKKLGPDCYTYNAILSALADAGRMKEAEEFMSRIVEQGKL 699



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 78/350 (22%), Positives = 162/350 (46%), Gaps = 11/350 (3%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++N ++DVL K G+  +  + +  MK +G+L +  TF  +   YC  G   EA    D+M
Sbjct: 249 SYNTILDVLCKKGKLNEARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLM 308

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGN 232
           + + V  DV   N L+  +C+ + +   A    + ++ + + PD  ++  L+ G     +
Sbjct: 309 AQNNVLPDVWTYNMLIGGLCK-DGKIDEAFRLKDEMENLKLLPDVVTYNTLINGC---FD 364

Query: 233 VEEANKTFGEMVERFEWN--PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
              + K F E++++ E      + + Y   +   ++  ++D A   LR M+     P   
Sbjct: 365 CSSSLKGF-ELIDKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCV 423

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
            F+  ++   K    + A ++ D M   G  +  N +  N ++  LC    +D+ ++   
Sbjct: 424 TFNTLINGYCKAGRLSEAFRMMDEMSRKGLKM--NSVTLNTILHTLCGERKLDDAYKLLS 481

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
                G F D ++Y  +     K+ +  E  K + EM + E  P+ +   T I  L  + 
Sbjct: 482 SASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLCHSG 541

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           + + +I+  N +LE+G++P E + N +++G    G++    +F  +M+ +
Sbjct: 542 KTDQSIDKLNELLESGLVPDETTYNTIILGYCREGQVEKAFQFHNKMVKK 591



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/383 (21%), Positives = 163/383 (42%), Gaps = 38/383 (9%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N++V    K G  ++    + +M ++ VL  + T+  +    C  GK DEA    D M
Sbjct: 284 TFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNMLIGGLCKDGKIDEAFRLKDEM 343

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
               +  DVV  N+L++  C   + + +  E +++++ K V P+  ++ ++++ + KEG 
Sbjct: 344 ENLKLLPDVVTYNTLING-CFDCSSSLKGFELIDKMEGKGVKPNAVTYNVVVKWYVKEGK 402

Query: 233 VEEANK---------------TF----------GEMVERFEWNPE--------HVLAYET 259
           ++ A                 TF          G + E F    E        + +   T
Sbjct: 403 MDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNT 462

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG 319
            L TL   +++D+A K L        F     +   +    K   S  A++LWD M    
Sbjct: 463 ILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEK- 521

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
             ++P++I YN +IG LC++   D      ++++  G  PD  TYN I     +  +V +
Sbjct: 522 -EIIPSIITYNTMIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNTIILGYCREGQVEK 580

Query: 380 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 439
             +F ++M+K  ++P    C   +  L      + A++++N  +  G      + N ++ 
Sbjct: 581 AFQFHNKMVKKSFKPDLFTCNILLRGLCTEGMLDKALKLFNTWISKGKAIDAVTYNTIIS 640

Query: 440 GLRNLGRLSDVRRFAEEMLNRRI 462
           GL    R  +      EM  +++
Sbjct: 641 GLCKEDRFEEAFDLLAEMEEKKL 663



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 79/366 (21%), Positives = 152/366 (41%), Gaps = 42/366 (11%)

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE---FLNRVKKI 212
           +Y    +   A   F+ M    ++ +++  N+L++A+ R  ++ S  L    F + +K  
Sbjct: 148 AYVACNRPHHAAQIFNRMKRLHLKPNLLTCNTLINALVRYPSKPSVYLSKAIFSDVIKLG 207

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
           V  + ++F IL+ G   E  + EA    G+M + F   P++V +Y T L  L +  +++E
Sbjct: 208 VKVNTNTFNILIYGCCIENKLSEAIGLIGKMKD-FSCFPDNV-SYNTILDVLCKKGKLNE 265

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAV 332
           A   L  MK     P    F+  +    KL     A Q+ D+M     N++P++  YN +
Sbjct: 266 ARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQ--NNVLPDVWTYNML 323

Query: 333 IGLLCNNDDVDNVFRFFDQM--------------VFHGAF-------------------- 358
           IG LC +  +D  FR  D+M              + +G F                    
Sbjct: 324 IGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKMEGKGV 383

Query: 359 -PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 417
            P+++TYN++ +  +K  ++        +M ++ + P  +   T I     A     A  
Sbjct: 384 KPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFR 443

Query: 418 IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFY 477
           + + +   G+     + N +L  L    +L D  +       R   + EV+   L   ++
Sbjct: 444 MMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYF 503

Query: 478 NESRSM 483
            + +S+
Sbjct: 504 KDGKSV 509



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 70/338 (20%), Positives = 138/338 (40%), Gaps = 4/338 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF  +    C   K  EA+     M       D V+ N++L  +C++          L+ 
Sbjct: 214 TFNILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTILDVLCKKGKLNEARDLLLDM 273

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
               + P+ ++F IL+ G+ K G ++EA +    M +     P+ V  Y   +  L +  
Sbjct: 274 KNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVL-PD-VWTYNMLIGGLCKDG 331

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           ++DEA +    M+     P +  ++  ++     + S    +L D M G G  + PN + 
Sbjct: 332 KIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKMEGKG--VKPNAVT 389

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           YN V+        +DN      +M   G  PD +T+N +     K  R+ E  +   EM 
Sbjct: 390 YNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMS 449

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
           +   +   +   T +  L    + + A ++ +   + G    E S   L++G    G+  
Sbjct: 450 RKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKDGKSV 509

Query: 449 DVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDI 486
           +  +  +EM  + I+   +T + +     +  ++ + I
Sbjct: 510 EAMKLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSI 547



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 79/178 (44%), Gaps = 2/178 (1%)

Query: 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
           I   +  N   +N +I   C  + +        +M     FPD+++YN I + L K  ++
Sbjct: 204 IKLGVKVNTNTFNILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTILDVLCKKGKL 263

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 437
           +E      +M  N   P        ++        + A ++ + + +N +LP   + N L
Sbjct: 264 NEARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNML 323

Query: 438 LVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMR--DIFDSLERR 493
           + GL   G++ +  R  +EM N ++L   VT + L    ++ S S++  ++ D +E +
Sbjct: 324 IGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKMEGK 381


>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Vitis vinifera]
          Length = 778

 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 150/338 (44%), Gaps = 10/338 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G + +    N+MV    K G+ +   N +  M+E G      T+ ++ + YC AG   E
Sbjct: 377 KGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGE 436

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILL 224
           A  + D M    ++ D V +N++L  +CR E +   A + L+  +K     D  S+  L+
Sbjct: 437 AFRTMDEMGRKNMKMDSVTLNTILRTLCR-EKKLEEAYKLLSSARKRGYFIDEVSYGTLI 495

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G+ K+GNV+ A K + EM E+ E  P  V  Y   +  L +  + ++A+  L  +    
Sbjct: 496 VGYFKDGNVDRALKLWDEMKEK-EIIPSTV-TYNCIIGGLCQCGKTEQAISKLNELLESG 553

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
             P    ++  L    +  D   A Q  + MV   F   P++   N ++  LC    ++ 
Sbjct: 554 LLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFK--PDVFTCNILLRGLCMEGVLEK 611

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
             + F+  V  G   D++TYN +   L K  R+ +      EM + E  P        IT
Sbjct: 612 ALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIIT 671

Query: 405 MLLDADEPEIAIEIWNYILENGILP---LEASANELLV 439
            L D+     A E  + +LE G LP   L+   NE +V
Sbjct: 672 ALTDSGRIREAEEFMSKMLEKGNLPDQVLQLDKNETVV 709



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 150/345 (43%), Gaps = 5/345 (1%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +N++++ L   GR E+ +     M+   +L  + ++ ++ +      K  EA    + 
Sbjct: 314 WTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEE 373

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           MS  GV+ + V  N ++   C++      +       +    PD  ++  L+ G+ K GN
Sbjct: 374 MSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGN 433

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           + EA +T  EM  R     + V    T L TL R K+++EA K L   +    F     +
Sbjct: 434 MGEAFRTMDEM-GRKNMKMDSV-TLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSY 491

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
              +    K  +   A++LWD M      ++P+ + YN +IG LC     +      +++
Sbjct: 492 GTLIVGYFKDGNVDRALKLWDEMKEK--EIIPSTVTYNCIIGGLCQCGKTEQAISKLNEL 549

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
           +  G  PD  TYN I     +   V +  +F ++M++N ++P    C   +  L      
Sbjct: 550 LESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGVL 609

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           E A++++N  +  G      + N L+  L   GRL D      EM
Sbjct: 610 EKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEM 654



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 92/395 (23%), Positives = 160/395 (40%), Gaps = 61/395 (15%)

Query: 98  AVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           AV+F    G+    SP    +N ++D L K GR     + +  MK  G+L +  T+  + 
Sbjct: 227 AVEFLNVMGK-YNCSPDNVTYNTILDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILV 285

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD 214
             YC  G   EA    ++M+ + +  DV   N L++ +C                     
Sbjct: 286 YGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCN-------------------- 325

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
                          EG +EEA K   EM E  +  P+ V++Y T +   +   ++ EA 
Sbjct: 326 ---------------EGRIEEAFKLRDEM-ENLKLLPD-VVSYNTLINGCLEWSKISEAF 368

Query: 275 KFLRVMKGENCFPTLKFFSNAL--DILVK-------LNDSTHAVQLWDIMVGIGFNLMPN 325
           K L  M  +   P      NA+  +I+VK       ++D+++ +     M   GF+  P+
Sbjct: 369 KLLEEMSEKGVKP------NAVTHNIMVKWYCKEGKMDDASNTITK---MEESGFS--PD 417

Query: 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 385
            + YN +I   C   ++   FR  D+M       DS+T N I   L + K++ E  K   
Sbjct: 418 CVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLS 477

Query: 386 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
              K  +    ++  T I         + A+++W+ + E  I+P   + N ++ GL   G
Sbjct: 478 SARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCG 537

Query: 446 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 480
           +         E+L   +L  E T + +   +  E 
Sbjct: 538 KTEQAISKLNELLESGLLPDETTYNTILHGYCREG 572



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 86/386 (22%), Positives = 171/386 (44%), Gaps = 8/386 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG   +   +N++V    K G  ++  N + +M ++ +L  + T+  + +  C  G+ +E
Sbjct: 272 RGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEE 331

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILL 224
           A    D M    +  DVV+ N+L++  C + ++ S A + L  + +K V P+  +  I++
Sbjct: 332 AFKLRDEMENLKLLPDVVSYNTLING-CLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMV 390

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           + + KEG +++A+ T  +M E   ++P+ V  Y T +    +   + EA + +  M  +N
Sbjct: 391 KWYCKEGKMDDASNTITKM-EESGFSPDCV-TYNTLINGYCKAGNMGEAFRTMDEMGRKN 448

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
                   +  L  L +      A +L       G+ +  + + Y  +I     + +VD 
Sbjct: 449 MKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFI--DEVSYGTLIVGYFKDGNVDR 506

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
             + +D+M      P ++TYN I   L +  +  +     +E++++   P      T + 
Sbjct: 507 ALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILH 566

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 464
                 + E A +  N ++EN   P   + N LL GL   G L    +     +++   I
Sbjct: 567 GYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGVLEKALKLFNTWVSKGKAI 626

Query: 465 YEVTMHKLKKAFYNESRSMRDIFDSL 490
             VT + L  +   E R + D F+ L
Sbjct: 627 DTVTYNTLITSLCKEGR-LDDAFNLL 651



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 110/267 (41%), Gaps = 19/267 (7%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSF 170
           S   +N ++  L + G+ EQ  + +  + E G+L    T+ +I   YC  G  ++A    
Sbjct: 522 STVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFH 581

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEK 229
           + M  +  + DV   N LL  +C  E    +AL+  N  V K    D  ++  L+    K
Sbjct: 582 NKMVENSFKPDVFTCNILLRGLC-MEGVLEKALKLFNTWVSKGKAIDTVTYNTLITSLCK 640

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
           EG +++A     EM E+ E  P+H   Y   +  L    ++ EA +F+  M  +   P  
Sbjct: 641 EGRLDDAFNLLSEMEEK-ELGPDHY-TYNAIITALTDSGRIREAEEFMSKMLEKGNLP-- 696

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
                  D +++L+ +   V               + + Y+  I  LC      +  R F
Sbjct: 697 -------DQVLQLDKNETVVTSETSEE-----SDSSSVAYSEWIKELCTEGKYKDAMRIF 744

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKR 376
            +    G   D  TY  + + LIK ++
Sbjct: 745 GESKQKGITVDKSTYINLMDGLIKRRK 771



 Score = 44.7 bits (104), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 76/190 (40%), Gaps = 3/190 (1%)

Query: 303 NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSL 362
           N    AV+  ++M    +N  P+ + YN ++  LC    + +       M   G  P+  
Sbjct: 222 NKFKDAVEFLNVMGK--YNCSPDNVTYNTILDTLCKKGRLGDARDLLMDMKSRGLLPNRN 279

Query: 363 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 422
           TYN++     K   + E       M +N   P        I  L +    E A ++ + +
Sbjct: 280 TYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEM 339

Query: 423 LENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 482
               +LP   S N L+ G     ++S+  +  EEM  + +    VT H +   +Y +   
Sbjct: 340 ENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVT-HNIMVKWYCKEGK 398

Query: 483 MRDIFDSLER 492
           M D  +++ +
Sbjct: 399 MDDASNTITK 408


>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
          Length = 1512

 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 163/369 (44%), Gaps = 7/369 (1%)

Query: 114  YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
            + + +++D L K+G   +  +    M   G+L  +  ++S+ D  C  G+  EA+  F  
Sbjct: 1086 FTYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKE 1145

Query: 173  MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEKEG 231
            M   G+  DV   NSL+  + R          FLN  V +   PD  +F IL++G  KEG
Sbjct: 1146 MEGRGISADVYTYNSLIHGLSRA-GLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEG 1204

Query: 232  NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
             V EA +    M  R +     +L Y T +  L    Q+++A K    +        +  
Sbjct: 1205 KVGEAQQILELM--RHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFS 1262

Query: 292  FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
            ++  ++   K      A + ++ M   G  L P+ + YN +IG LC +  V    + F +
Sbjct: 1263 YNILINGYCKDQKIDEAFRFFEEMRPKG--LKPSTVTYNTLIGALCQSGRVRTAQKLFVE 1320

Query: 352  MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
            M   G F    TY ++ + L KN  + E    F  + K E +P     +  +  +  A +
Sbjct: 1321 MQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGK 1380

Query: 412  PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK 471
             E A + ++ I +NG+ P   + N L+ GL N G LS+  +   +M  +  L   +T + 
Sbjct: 1381 LEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNV 1440

Query: 472  LKKAFYNES 480
            + +    E+
Sbjct: 1441 IIQNLLKEN 1449



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/309 (23%), Positives = 143/309 (46%), Gaps = 9/309 (2%)

Query: 107  RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
            RG     + + +++D L K G+  +    + +M+  G    + T+ ++ +  C  G+ ++
Sbjct: 1184 RGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLED 1243

Query: 166  AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILL 224
            A   F+ ++  G++ +V + N L++  C+ + +   A  F   ++ K + P   ++  L+
Sbjct: 1244 ATKLFESLADRGIKLNVFSYNILINGYCK-DQKIDEAFRFFEEMRPKGLKPSTVTYNTLI 1302

Query: 225  EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
                + G V  A K F EM    ++    +  Y   L  L +   ++EA+   + +K   
Sbjct: 1303 GALCQSGRVRTAQKLFVEMQTCGQF--LKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTE 1360

Query: 285  CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
              P ++ FS  LD + +      A + +D +   G  L P+ I YN +I  LCN   +  
Sbjct: 1361 HKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNG--LEPDTIAYNILINGLCNKGMLSE 1418

Query: 345  VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
              +   QM   G  PDS+T+N+I + L+K   +HE  +   EM    + P      T++ 
Sbjct: 1419 AVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPD--EAVTSML 1476

Query: 405  MLLDADEPE 413
            + L + +P+
Sbjct: 1477 LCLASFDPQ 1485



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 85/376 (22%), Positives = 163/376 (43%), Gaps = 8/376 (2%)

Query: 67   DIESALACTGIIPTPDLVHEVLQ--LSYDSPSSAVDFFR-WAGRGQRLSPYAWNLMVDVL 123
            D+ S +   GI+P   +   ++     +     A++FF+   GRG     Y +N ++  L
Sbjct: 1106 DMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGL 1165

Query: 124  GKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDV 182
             + G ++++   + +M + G      TF  + D  C  GK  EA    ++M   G E D+
Sbjct: 1166 SRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDI 1225

Query: 183  VAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
            +  N+L++ +C           F +   + +  +  S+ IL+ G+ K+  ++EA + F E
Sbjct: 1226 LTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEE 1285

Query: 243  MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
            M  R +      + Y T +  L +  +V  A K    M+    F  L  +   LD L K 
Sbjct: 1286 M--RPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKN 1343

Query: 303  NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSL 362
                 A+ L+  +        PN+ +++ ++  +C    ++  ++ FD++  +G  PD++
Sbjct: 1344 GHLEEAMDLFQSIKKTEHK--PNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTI 1401

Query: 363  TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 422
             YN++   L     + E  K   +M +    P  +     I  LL  +E   AI++   +
Sbjct: 1402 AYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEM 1461

Query: 423  LENGILPLEASANELL 438
                  P EA  + LL
Sbjct: 1462 RNRNFSPDEAVTSMLL 1477



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 132/314 (42%), Gaps = 5/314 (1%)

Query: 149  TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
            TF  +  S    G Y      +  ++  G++ D+  +N L+   C           F   
Sbjct: 948  TFNHLLASVAKLGYYSTVFPMYRKINDVGIQPDLYTLNILIHCCCSLRAVGCGFGVFGGF 1007

Query: 209  VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
            +K+  +PD  +   L++G   E  + +A + F EM ++          Y   +  L + +
Sbjct: 1008 LKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTKKGLLGDAK--TYGILINGLCKAR 1065

Query: 269  QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
            +   A+K    MKG NC   +  +   +D L K   +T A+ ++  M+G G  ++P++++
Sbjct: 1066 KTGLAIKLHEKMKG-NCKGDVFTYGMIIDALCKDGMTTEALDMFSEMIGAG--ILPDVVV 1122

Query: 329  YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
            Y++++  LC    +     FF +M   G   D  TYN +   L +     EV  F + M+
Sbjct: 1123 YSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMV 1182

Query: 389  KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
               + P        I  L    +   A +I   +   G  P   + N L+ GL  +G+L 
Sbjct: 1183 DRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLE 1242

Query: 449  DVRRFAEEMLNRRI 462
            D  +  E + +R I
Sbjct: 1243 DATKLFESLADRGI 1256


>gi|302757245|ref|XP_002962046.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
 gi|300170705|gb|EFJ37306.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
          Length = 465

 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 149/347 (42%), Gaps = 8/347 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSFD 171
           ++N +++ L K  R+ +    VR M   G  S P   T++++   YC AGK +E+     
Sbjct: 47  SYNGLLEGLCKLERWHEAEELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLK 106

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
            +   G+  D +    +++++C+              ++    P   +F  L+ G  +E 
Sbjct: 107 EVISRGLRPDALMYTKVVASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREK 166

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           N+E A+    +M          V+ Y T +  L +  ++ EA + L  MK   C P +  
Sbjct: 167 NLEMADSLLQKMAA--SGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVA 224

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           +S+ +  L K      A Q+ + M     +  PN++ YN ++  LC +  +D      +Q
Sbjct: 225 YSSFVYGLCKSGKVLDAHQVLEQMRDSHHD--PNVVTYNTILDGLCKSGKIDTALEMMEQ 282

Query: 352 MVFH-GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
           M    G   + + Y+ + + L K  R  E       M +   +P  +  ++ +  L  A 
Sbjct: 283 MASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAG 342

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           + E A+E    +   G  P   +   L+ GL + GRL++  R  EEM
Sbjct: 343 KIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEM 389



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 137/294 (46%), Gaps = 15/294 (5%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAG 161
           + A  G +     +N ++D L K GR ++    +  MK  G    +  ++S     C +G
Sbjct: 177 KMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSG 236

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS-- 219
           K  +A    + M     + +VV  N++L  +C+   +   ALE +   +++   DG    
Sbjct: 237 KVLDAHQVLEQMRDSHHDPNVVTYNTILDGLCKS-GKIDTALEMM---EQMASSDGCGLN 292

Query: 220 ---FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
              ++ +++G  K G  +EA     E + R    P+ V+ Y + +  L +  +++EA++ 
Sbjct: 293 VVGYSTVVDGLCKLGRTQEARSVM-EAMARAGCRPD-VVTYSSLVNGLCKAGKIEEAVEA 350

Query: 277 LRVMKGENCFPTLKFFSNALDILV---KLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
           +R M  E C P    + + +  L    +L ++   V+      G G +  P++  YNA+I
Sbjct: 351 VREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGHHCPPSVSTYNALI 410

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
           G LC    +D+  +FF +M   G  PD ++Y+ I E L ++ R  + E    E+
Sbjct: 411 GGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRALQAEMILSEV 464



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 82/375 (21%), Positives = 144/375 (38%), Gaps = 53/375 (14%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFR-----WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWN 134
           TPD+V     LS    +  V+  R        RG R     +  +V  L K+ R  +   
Sbjct: 79  TPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVVASLCKSARLGEALE 138

Query: 135 AVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC 193
            +  M   G   +L TF ++    C     + A      M+  GV+ DVV  N+L+  +C
Sbjct: 139 LLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLC 198

Query: 194 RQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
           +   +   A + L R+K     PD  +++  + G  K G V +A++   +M  R   +  
Sbjct: 199 KA-GRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQM--RDSHHDP 255

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVM-KGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           +V+ Y T L  L +  ++D AL+ +  M   + C   +  +S  +D L KL  +  A  +
Sbjct: 256 NVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSV 315

Query: 312 WDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPD----------- 360
            + M   G    P+++ Y++++  LC    ++       +M   G  P+           
Sbjct: 316 MEAMARAGCR--PDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGL 373

Query: 361 -----------------------------SLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
                                          TYN +   L K  R+ +  KFF  M    
Sbjct: 374 CSCGRLAEAERMVEEMSSGGGGGHHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQG 433

Query: 392 WQPTPLNCATAITML 406
             P  ++ +T +  L
Sbjct: 434 CDPDGVSYSTIVEGL 448



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 78/183 (42%)

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
           + L  M   +  P +  ++  L+ L KL     A +L   M+  G    P+++ Y+ ++ 
Sbjct: 31  RLLETMAARDIQPNVVSYNGLLEGLCKLERWHEAEELVRDMISRGGRSTPDMVTYSTLLS 90

Query: 335 LLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
             C    V+       +++  G  PD+L Y  +   L K+ R+ E  +   EMI+    P
Sbjct: 91  GYCKAGKVEESRELLKEVISRGLRPDALMYTKVVASLCKSARLGEALELLEEMIRAGCCP 150

Query: 395 TPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 454
           T +   T I+        E+A  +   +  +G+     + N L+ GL   GRL +  +  
Sbjct: 151 TLITFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLL 210

Query: 455 EEM 457
           E M
Sbjct: 211 ERM 213



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/245 (20%), Positives = 104/245 (42%), Gaps = 6/245 (2%)

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           P+  +F  L+ G+ K+G   +  +    M  R +  P +V++Y   L  L + ++  EA 
Sbjct: 8   PNSVTFNALVNGFSKQGRPGDCERLLETMAAR-DIQP-NVVSYNGLLEGLCKLERWHEAE 65

Query: 275 KFLRVM--KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAV 332
           + +R M  +G    P +  +S  L    K      + +L   ++  G  L P+ +MY  V
Sbjct: 66  ELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRG--LRPDALMYTKV 123

Query: 333 IGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 392
           +  LC +  +       ++M+  G  P  +T+N +     + K +   +    +M  +  
Sbjct: 124 VASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAASGV 183

Query: 393 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 452
           +   +   T +  L  A   + A ++   +  +G  P   + +  + GL   G++ D  +
Sbjct: 184 KADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQ 243

Query: 453 FAEEM 457
             E+M
Sbjct: 244 VLEQM 248


>gi|115446773|ref|NP_001047166.1| Os02g0565400 [Oryza sativa Japonica Group]
 gi|113536697|dbj|BAF09080.1| Os02g0565400, partial [Oryza sativa Japonica Group]
          Length = 353

 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 158/341 (46%), Gaps = 7/341 (2%)

Query: 125 KNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV 183
           K   ++Q    +  M++ G    + T+  + +  C  G+ D+A+     +  +G E + V
Sbjct: 4   KRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTV 63

Query: 184 AVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
           + N +L  +C  E +   A E +  + +K   P+  +F +L+    ++G VE A +   E
Sbjct: 64  SYNIVLKGLCTAE-RWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVL-E 121

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
            + ++   P + L+Y   L    + K++D+A+ FL +M    C+P +  ++  L  L + 
Sbjct: 122 QIPKYGCTP-NSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRS 180

Query: 303 NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSL 362
            +   AV+L   +   G    P LI YN VI  L             ++MV  G  PD +
Sbjct: 181 GEVDVAVELLHQLKDKG--CAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDII 238

Query: 363 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 422
           TY+ I   L +  R+ +  + F ++     +P  +     I  L    E   AI+++ Y+
Sbjct: 239 TYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYM 298

Query: 423 LENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
           + NG +P E++   L+ GL   G + + R   +E+ +R ++
Sbjct: 299 IGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRGVV 339



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 143/339 (42%), Gaps = 8/339 (2%)

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPD 216
           C    Y +A+   D M   G   D+V  N +++ IC QE +   A+EFL  +     +P+
Sbjct: 3   CKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGIC-QEGRVDDAIEFLKNLPSYGCEPN 61

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
             S+ I+L+G       E+A +  GEM ++    P +V+ +   +  L R   V+ AL+ 
Sbjct: 62  TVSYNIVLKGLCTAERWEDAEELMGEMGQK--GCPPNVVTFNMLISFLCRKGLVEPALEV 119

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLL 336
           L  +    C P    ++  L    K      A+   D+MV  G    P+++ YN ++  L
Sbjct: 120 LEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRG--CYPDIVSYNTLLTAL 177

Query: 337 CNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 396
           C + +VD       Q+   G  P  ++YN + + L K  +  E  +  +EM+    QP  
Sbjct: 178 CRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDI 237

Query: 397 LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 456
           +  +T    L   D  E AI  +  + + GI P     N +++GL               
Sbjct: 238 ITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAY 297

Query: 457 MLNRRILIYEVTMHKLKKAFYNES--RSMRDIFDSLERR 493
           M+    +  E T   L +    E   +  RD+ D L  R
Sbjct: 298 MIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSR 336


>gi|222612845|gb|EEE50977.1| hypothetical protein OsJ_31558 [Oryza sativa Japonica Group]
          Length = 1263

 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 122/520 (23%), Positives = 208/520 (40%), Gaps = 72/520 (13%)

Query: 18  PSSSSTTTSPTSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGI 77
           PSS +   S    +P RP++ R              R   +  A    D+  +A      
Sbjct: 141 PSSRTAGVSSPGLSPSRPSKRRI------------GRARVQPRAPPPCDERRAA------ 182

Query: 78  IPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWNA 135
               D++H +   S D P+ A++ FR A R  R+  +  + N M++++  +GR   M   
Sbjct: 183 ---EDVIHALR--SADGPAEALERFRSAARKPRVAQTTASCNYMLELMRGHGRVGDMAEV 237

Query: 136 VRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194
             VM+   V + + TFA+IF      G    A ++  VM   G+  +    N L+  + +
Sbjct: 238 FDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVK 297

Query: 195 QENQTSRALEFLNRVKKI--VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
                  ALE + RV  +  V P   ++++L+  + K  +VE       EM E     P 
Sbjct: 298 S-GFDREALE-VYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREM-EAHGVKP- 353

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL-------------KFFSNALDIL 299
           +V +Y   +  L + K+ DEA + L  M+ E C P +                S+A D+ 
Sbjct: 354 NVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVF 413

Query: 300 VKL----------------------NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337
            K+                       DS   +++W+ M   G+N   N++ Y AVI  LC
Sbjct: 414 WKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYN--DNVVAYTAVIDALC 471

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
               V      FD+M   G  P+  +YN +    +K  R  +  + F  M  +  +P   
Sbjct: 472 QVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGY 531

Query: 398 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
                I     + E   AI+ +  +   GI+P   + N +L GL   GRL   +R   E+
Sbjct: 532 THVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHEL 591

Query: 458 LNRRILIYEVTMHKLKKAFYNESR---SMRDIFDSLERRC 494
               +    +T   + K     S+   +++  +D +E  C
Sbjct: 592 KAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNC 631



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 161/354 (45%), Gaps = 11/354 (3%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G + + Y++ + + VLG+  RF++ +  +  M+ +G    + T   +    C AG+  +A
Sbjct: 350 GVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDA 409

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD---SFAIL 223
              F  M     + D V   +LL       +  S  +E  N +K   D   D   ++  +
Sbjct: 410 KDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQS-VMEIWNAMK--ADGYNDNVVAYTAV 466

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           ++   + G V EA + F EM ++    PE   +Y + +   ++  +  +AL+  + M   
Sbjct: 467 IDALCQVGRVFEALEMFDEMKQK-GIVPEQ-YSYNSLISGFLKADRFGDALELFKHMDIH 524

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
              P        ++   K  +S  A+Q +++M   G  ++P+++  NAV+  L  +  + 
Sbjct: 525 GPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKG--IVPDVVAGNAVLFGLAKSGRLG 582

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
              R F ++   G  PD++TY M+ +C  K  +  E  K F++MI+N   P  L   + I
Sbjct: 583 MAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLI 642

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
             L  A   + A  I+  + E  + P + + N LL GL   G++ +V    EEM
Sbjct: 643 DTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEM 696



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 83/381 (21%), Positives = 170/381 (44%), Gaps = 25/381 (6%)

Query: 96   SSAVDFFRWAGRGQR------------LSPY--AWNLMVDVLGKNGRFEQMWNAVRVMKE 141
            +S +D    AGRG              L P    +N ++  LG+ G+ +++ + +  M  
Sbjct: 639  NSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYH 698

Query: 142  DGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS 200
                 +L T+ +I D  C  G  ++A+     M+  G   D+ + N+++  + ++E + +
Sbjct: 699  SNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEE-RYN 757

Query: 201  RALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL---AY 257
             A     ++KK++ PD  +   +L  + K G ++EA      +++ +   P       + 
Sbjct: 758  EAFSIFCQMKKVLIPDYATLCTILPSFVKIGLMKEAL----HIIKDYFLQPGSKTDRSSC 813

Query: 258  ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317
             + +  +++   ++++++F  ++          F    +  L K   +  A +L      
Sbjct: 814  HSLMEGILKKAGIEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKS 873

Query: 318  IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
             G +L   L  YN++I  L + + +D     F +M   G  PD  TYN++ + + K+ R+
Sbjct: 874  FGVSLKTGL--YNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRI 931

Query: 378  HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 437
             E+ K   EM +  ++ T +   T I+ L+ +   E AI+++  ++  G  P   +   L
Sbjct: 932  EEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPL 991

Query: 438  LVGLRNLGRLSDVRRFAEEML 458
            L GL   GR+ D      EML
Sbjct: 992  LDGLLKAGRIEDAENLFNEML 1012



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 91/385 (23%), Positives = 159/385 (41%), Gaps = 55/385 (14%)

Query: 81  PDLV-HEVL-QLSYDSP--SSAVD-FFRWAGRGQRLSPYAWNLMVDVLGKNGRFE---QM 132
           PD++ H VL Q+  D+   S A D F++     Q+     +  ++D  G NG  +   ++
Sbjct: 388 PDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEI 447

Query: 133 WNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
           WNA   MK DG   ++  + ++ D+ C  G+  EA+  FD M   G+  +  + NSL+S 
Sbjct: 448 WNA---MKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISG 504

Query: 192 ICRQE-------------------------------NQTSRALEFLNRVK----KIVDPD 216
             + +                                ++  +++ + R +    K + PD
Sbjct: 505 FLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPD 564

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
             +   +L G  K G +  A + F E+ +    +P+  + Y   +    +  + DEA+K 
Sbjct: 565 VVAGNAVLFGLAKSGRLGMAKRVFHEL-KAMGVSPD-TITYTMMIKCCSKASKFDEAVKI 622

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG-FNLMPNLIMYNAVIGL 335
              M   NC P +   ++ +D L K      A   W I   +   NL P    YN ++  
Sbjct: 623 FYDMIENNCVPDVLAVNSLIDTLYKAGRGDEA---WRIFYQLKEMNLEPTDGTYNTLLAG 679

Query: 336 LCNNDDVDNVFRFFDQMVFHGAFPDSL-TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
           L     V  V    ++M +H  +P +L TYN I +CL KN  V++     + M      P
Sbjct: 680 LGREGKVKEVMHLLEEM-YHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIP 738

Query: 395 TPLNCATAITMLLDADEPEIAIEIW 419
              +  T I  L+  +    A  I+
Sbjct: 739 DLSSYNTVIYGLVKEERYNEAFSIF 763



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 72/324 (22%), Positives = 129/324 (39%), Gaps = 54/324 (16%)

Query: 114  YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            + +NL++D +GK+ R E+M   ++V +E                               M
Sbjct: 916  FTYNLLLDAMGKSMRIEEM---LKVQEE-------------------------------M 941

Query: 174  SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
               G E   V  N+++S + +          + N + +   P   ++  LL+G  K G +
Sbjct: 942  HRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRI 1001

Query: 234  EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV----DEALKFLRVMKGENCFPTL 289
            E+A   F EM+E          A  T    L+ G ++    ++     + M  +   P +
Sbjct: 1002 EDAENLFNEMLEY------GCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDI 1055

Query: 290  KFFSNALDILVK---LNDS-THAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            K ++  +D L K   LND  T+  QL ++       L P+LI YN +I  L  +  ++  
Sbjct: 1056 KSYTIIIDTLCKAGQLNDGLTYFRQLLEM------GLEPDLITYNLLIDGLGKSKRLEEA 1109

Query: 346  FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
               F++M   G  P+  TYN +   L K  +  E  K + E++   W+P        I  
Sbjct: 1110 VSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRG 1169

Query: 406  LLDADEPEIAIEIWNYILENGILP 429
               +   + A   +  ++  G LP
Sbjct: 1170 YSVSGSTDSAYAAYGRMIVGGCLP 1193



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 129/285 (45%), Gaps = 6/285 (2%)

Query: 177  GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEE 235
            GV       NSL+  +   EN    A      +K++   PD  ++ +LL+   K   +EE
Sbjct: 875  GVSLKTGLYNSLICGLV-DENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEE 933

Query: 236  ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
              K   EM  R  +   +V  Y T +  L++ +++++A+     +  +   PT   +   
Sbjct: 934  MLKVQEEM-HRKGYESTYV-TYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPL 991

Query: 296  LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
            LD L+K      A  L++ M+  G     N  +YN ++       + + V   F  MV  
Sbjct: 992  LDGLLKAGRIEDAENLFNEMLEYGCK--ANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQ 1049

Query: 356  GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 415
            G  PD  +Y +I + L K  ++++   +F ++++   +P  +     I  L  +   E A
Sbjct: 1050 GINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEA 1109

Query: 416  IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
            + ++N + + GI+P   + N L++ L   G+ ++  +  EE+L +
Sbjct: 1110 VSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTK 1154



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/255 (21%), Positives = 117/255 (45%), Gaps = 5/255 (1%)

Query: 107  RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDE 165
            +G   +   +N ++  L K+ R EQ  +    +   G    P T+  + D    AG+ ++
Sbjct: 944  KGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIED 1003

Query: 166  AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
            A   F+ M  +G + +    N LL+      N       F + V + ++PD  S+ I+++
Sbjct: 1004 AENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIID 1063

Query: 226  GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
               K G + +    F +++E     P+ ++ Y   +  L + K+++EA+     M+ +  
Sbjct: 1064 TLCKAGQLNDGLTYFRQLLE-MGLEPD-LITYNLLIDGLGKSKRLEEAVSLFNEMQKKGI 1121

Query: 286  FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
             P L  +++ +  L K   +  A ++++ ++  G+   PN+  YNA+I     +   D+ 
Sbjct: 1122 VPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWK--PNVFTYNALIRGYSVSGSTDSA 1179

Query: 346  FRFFDQMVFHGAFPD 360
            +  + +M+  G  P+
Sbjct: 1180 YAAYGRMIVGGCLPN 1194


>gi|357120446|ref|XP_003561938.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Brachypodium distachyon]
          Length = 787

 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 93/392 (23%), Positives = 169/392 (43%), Gaps = 11/392 (2%)

Query: 94  SPSSAVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTF 150
           SP +++D FR +    RL P  Y +NL+V      G      + +  M+  G+     T+
Sbjct: 184 SPQASLDAFR-SIVALRLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDAVTY 242

Query: 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE--NQTSRALEFLNR 208
            ++ +++C  G   EA      M   GV       N+L+SA  R     Q ++ +E +  
Sbjct: 243 NTLLNAHCRKGMLGEARALLARMKKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAM-- 300

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
                +PD  ++ +L  G  + G V+EA +   EM ER       V+ Y T      + +
Sbjct: 301 TANGFEPDLWTYNVLAAGLCQAGKVDEAFRLKDEM-ERLGTLLPDVVTYNTLADACFKCR 359

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
              +AL+ L  M+ +    TL   +  +  L K  +   A+   + M   G  L P++I 
Sbjct: 360 CSSDALRLLEEMREKGVKATLVTHNIVIKGLCKDGELEGALGCLNKMADDG--LAPDVIT 417

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           YN +I   C   ++   +   D+MV  G   D+ T N +   L K KR  E +       
Sbjct: 418 YNTLIHAHCKAGNIAKAYTLMDEMVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPP 477

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
           +  + P  ++  T +         E A+ +W+ ++E  + P  ++ N L+ GL  +GRL 
Sbjct: 478 QRGFMPDEVSYGTVMAAYFKEYNSEPALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLK 537

Query: 449 DVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 480
           +      E++ + ++  + T + +  A+  E 
Sbjct: 538 EAIDKLNELMEKGLVPDDTTYNIIIHAYCKEG 569



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 78/380 (20%), Positives = 158/380 (41%), Gaps = 40/380 (10%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G + +    N+++  L K+G  E     +  M +DG+   + T+ ++  ++C AG   +
Sbjct: 374 KGVKATLVTHNIVIKGLCKDGELEGALGCLNKMADDGLAPDVITYNTLIHAHCKAGNIAK 433

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A    D M   G++ D   +N++L  +C+++          +  ++   PD  S+  ++ 
Sbjct: 434 AYTLMDEMVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPDEVSYGTVMA 493

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
            + KE N E A + + EM+E+ +  P  +  Y T +  L R  ++ EA+           
Sbjct: 494 AYFKEYNSEPALRLWDEMIEK-KLTPS-ISTYNTLIKGLSRMGRLKEAID---------- 541

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
                          KLN+                 L+P+   YN +I   C   D++N 
Sbjct: 542 ---------------KLNELMEK------------GLVPDDTTYNIIIHAYCKEGDLENA 574

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
           F+F ++MV +   PD +T N +   L  N ++ +  K F   ++   +   +   T I  
Sbjct: 575 FQFHNKMVENSFKPDVVTCNTLMNGLCLNGKLDKALKLFESWVEKGKKVDVITYNTLIQT 634

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 465
           +    + + A+  +  +   G+ P   + N +L  L   GR  + +    ++     L  
Sbjct: 635 MCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRTEEAQNMLHKLAESGTLSQ 694

Query: 466 EVTMHKLKKAFYNESRSMRD 485
             +   LK +  +E+ S +D
Sbjct: 695 SFSSPLLKPSSVDEAESGKD 714



 Score = 47.0 bits (110), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 37/184 (20%), Positives = 70/184 (38%)

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346
           P+L+  +  L  L +   ++    L      +   L PN   +N ++   C+   + +  
Sbjct: 165 PSLQAANAVLSALARSPSTSPQASLDAFRSIVALRLHPNHYTFNLLVHTHCSKGTLADAL 224

Query: 347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406
                M   G  PD++TYN +     +   + E       M K+   PT     T ++  
Sbjct: 225 STLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKKDGVAPTRPTYNTLVSAY 284

Query: 407 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYE 466
                 + A ++   +  NG  P   + N L  GL   G++ +  R  +EM     L+ +
Sbjct: 285 ARLGWIKQATKVVEAMTANGFEPDLWTYNVLAAGLCQAGKVDEAFRLKDEMERLGTLLPD 344

Query: 467 VTMH 470
           V  +
Sbjct: 345 VVTY 348


>gi|242078797|ref|XP_002444167.1| hypothetical protein SORBIDRAFT_07g011860 [Sorghum bicolor]
 gi|241940517|gb|EES13662.1| hypothetical protein SORBIDRAFT_07g011860 [Sorghum bicolor]
          Length = 520

 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 98/378 (25%), Positives = 164/378 (43%), Gaps = 24/378 (6%)

Query: 87  VLQLSYDSPSSAVDFFRWAGRGQRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDGV 144
            L L Y    SAVD       G  L P A  W+L V   GK  RF+  W  VR M+  GV
Sbjct: 112 ALALRYGDECSAVD----GADGAGLPPPADAWHLAVWAAGKARRFDLAWAVVRRMRNRGV 167

Query: 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204
           L+      + + Y  A + ++AV +FDVM    VE D     SLL A+C+ +N    A E
Sbjct: 168 LTGRAMVILMERYAAANEVNKAVKTFDVMEKFKVESDQSVFYSLLRALCKSKN-IEDAEE 226

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKE-GNVEEANKTFGEMVERFEWNPEHVLAYETFLIT 263
            L   KK      + F I+L+GW     ++ EA + + EM       P+  ++Y   +  
Sbjct: 227 LLLLRKKFFPLSAEGFNIILDGWCNVITDLAEAKRVWREMSNHC-ITPDG-MSYTLMISC 284

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLM 323
             +   + + L+    MK     P +  +++ + +L + N    A  ++  +   G  L 
Sbjct: 285 FSKVGSLFDTLRVYDEMKKRGWIPGIGVYNSLVYVLTRENCVKDAHNIFSKLTDEG--LQ 342

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           P++  YN++I  LC +  +D      + M+  G  P   TY+      +K + + E  K 
Sbjct: 343 PDVETYNSMIVPLCESCKLDEARVVMESMILKGIVPTISTYH----AFLKQEGIDESLKL 398

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDA----DEPEIAIEIWNYILENGILPLEASANELLV 439
             +M ++   P     +    ML D     +E   A+ +WN + +  I P+ +    ++ 
Sbjct: 399 LQKMKEDGCGPK----SDTFLMLFDKFFLLNESGNALRVWNEMRKYKISPVRSHYMTVVE 454

Query: 440 GLRNLGRLSDVRRFAEEM 457
           GL   G +     + +EM
Sbjct: 455 GLVKHGCIPRALEYYDEM 472


>gi|78708657|gb|ABB47632.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1080

 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 123/520 (23%), Positives = 210/520 (40%), Gaps = 72/520 (13%)

Query: 18  PSSSSTTTSPTSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGI 77
           PSS +   S    +P RP++ R             AR+  +  A    D+  +A      
Sbjct: 16  PSSRTAGVSSPGLSPSRPSKRRI----------GRARV--QPRAPPPCDERRAA------ 57

Query: 78  IPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWNA 135
               D++H +   S D P+ A++ FR A R  R+  +  + N M++++  +GR   M   
Sbjct: 58  ---EDVIHALR--SADGPAEALERFRSAARKPRVAHTTASCNYMLELMRGHGRVGDMAEV 112

Query: 136 VRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194
             VM+   V  ++ TFA+IF      G    A ++  VM   G+  +    N L+  + +
Sbjct: 113 FDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVK 172

Query: 195 QENQTSRALEFLNRVKKI--VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
                  ALE + RV  +  V P   ++++L+  + K  +VE       EM E     P 
Sbjct: 173 S-GFDREALE-VYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREM-EAHGVKP- 228

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL-------------KFFSNALDIL 299
           +V +Y   +  L + K+ DEA + L  M+ E C P +                S+A D+ 
Sbjct: 229 NVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVF 288

Query: 300 VKL----------------------NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337
            K+                       DS   +++W+ M   G+N   N++ Y AVI  LC
Sbjct: 289 WKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYN--DNVVAYTAVIDALC 346

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
               V      FD+M   G  P+  +YN +    +K  R  +  + F  M  +  +P   
Sbjct: 347 QVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGY 406

Query: 398 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
                I     + E   AI+ +  +   GI+P   + N +L GL   GRL   +R   E+
Sbjct: 407 THVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHEL 466

Query: 458 LNRRILIYEVTMHKLKKAFYNESR---SMRDIFDSLERRC 494
               +    +T   + K     S+   +++  +D +E  C
Sbjct: 467 KAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNC 506



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 161/354 (45%), Gaps = 11/354 (3%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G + + Y++ + + VLG+  RF++ +  +  M+ +G    + T   +    C AG+  +A
Sbjct: 225 GVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDA 284

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD---SFAIL 223
              F  M     + D V   +LL       +  S  +E  N +K   D   D   ++  +
Sbjct: 285 KDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQS-VMEIWNAMK--ADGYNDNVVAYTAV 341

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           ++   + G V EA + F EM ++    PE   +Y + +   ++  +  +AL+  + M   
Sbjct: 342 IDALCQVGRVFEALEMFDEMKQK-GIVPEQ-YSYNSLISGFLKADRFGDALELFKHMDIH 399

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
              P        ++   K  +S  A+Q +++M   G  ++P+++  NAV+  L  +  + 
Sbjct: 400 GPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKG--IVPDVVAGNAVLFGLAKSGRLG 457

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
              R F ++   G  PD++TY M+ +C  K  +  E  K F++MI+N   P  L   + I
Sbjct: 458 MAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLI 517

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
             L  A   + A  I+  + E  + P + + N LL GL   G++ +V    EEM
Sbjct: 518 DTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEM 571



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/381 (21%), Positives = 170/381 (44%), Gaps = 25/381 (6%)

Query: 96  SSAVDFFRWAGRGQR------------LSPY--AWNLMVDVLGKNGRFEQMWNAVRVMKE 141
           +S +D    AGRG              L P    +N ++  LG+ G+ +++ + +  M  
Sbjct: 514 NSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYH 573

Query: 142 DGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS 200
                +L T+ +I D  C  G  ++A+     M+  G   D+ + N+++  + ++E + +
Sbjct: 574 SNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEE-RYN 632

Query: 201 RALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL---AY 257
            A     ++KK++ PD  +   +L  + K G ++EA      +++ +   P       + 
Sbjct: 633 EAFSIFCQMKKVLIPDYATLCTILPSFVKIGLMKEAL----HIIKDYFLQPGSKTDRSSC 688

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317
            + +  +++   ++++++F  ++          F    +  L K   +  A +L      
Sbjct: 689 HSLMEGILKKAGIEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKS 748

Query: 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
            G +L   L  YN++I  L + + +D     F +M   G  PD  TYN++ + + K+ R+
Sbjct: 749 FGVSLKTGL--YNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRI 806

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 437
            E+ K   EM +  ++ T +   T I+ L+ +   E AI+++  ++  G  P   +   L
Sbjct: 807 EEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPL 866

Query: 438 LVGLRNLGRLSDVRRFAEEML 458
           L GL   GR+ D      EML
Sbjct: 867 LDGLLKAGRIEDAENLFNEML 887



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 91/385 (23%), Positives = 159/385 (41%), Gaps = 55/385 (14%)

Query: 81  PDLV-HEVL-QLSYDSP--SSAVD-FFRWAGRGQRLSPYAWNLMVDVLGKNGRFE---QM 132
           PD++ H VL Q+  D+   S A D F++     Q+     +  ++D  G NG  +   ++
Sbjct: 263 PDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEI 322

Query: 133 WNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
           WNA   MK DG   ++  + ++ D+ C  G+  EA+  FD M   G+  +  + NSL+S 
Sbjct: 323 WNA---MKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISG 379

Query: 192 ICRQE-------------------------------NQTSRALEFLNRVK----KIVDPD 216
             + +                                ++  +++ + R +    K + PD
Sbjct: 380 FLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPD 439

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
             +   +L G  K G +  A + F E+ +    +P+  + Y   +    +  + DEA+K 
Sbjct: 440 VVAGNAVLFGLAKSGRLGMAKRVFHEL-KAMGVSPD-TITYTMMIKCCSKASKFDEAVKI 497

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG-FNLMPNLIMYNAVIGL 335
              M   NC P +   ++ +D L K      A   W I   +   NL P    YN ++  
Sbjct: 498 FYDMIENNCVPDVLAVNSLIDTLYKAGRGDEA---WRIFYQLKEMNLEPTDGTYNTLLAG 554

Query: 336 LCNNDDVDNVFRFFDQMVFHGAFPDSL-TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
           L     V  V    ++M +H  +P +L TYN I +CL KN  V++     + M      P
Sbjct: 555 LGREGKVKEVMHLLEEM-YHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIP 613

Query: 395 TPLNCATAITMLLDADEPEIAIEIW 419
              +  T I  L+  +    A  I+
Sbjct: 614 DLSSYNTVIYGLVKEERYNEAFSIF 638



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 133/332 (40%), Gaps = 54/332 (16%)

Query: 114  YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            + +NL++D +GK+ R E+M   ++V +E                               M
Sbjct: 791  FTYNLLLDAMGKSMRIEEM---LKVQEE-------------------------------M 816

Query: 174  SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
               G E   V  N+++S + +          + N + +   P   ++  LL+G  K G +
Sbjct: 817  HRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRI 876

Query: 234  EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV----DEALKFLRVMKGENCFPTL 289
            E+A   F EM+E          A  T    L+ G ++    ++     + M  +   P +
Sbjct: 877  EDAENLFNEMLEY------GCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDI 930

Query: 290  KFFSNALDILVK---LNDS-THAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            K ++  +D L K   LND  T+  QL ++       L P+LI YN +I  L  +  ++  
Sbjct: 931  KSYTIIIDTLCKAGQLNDGLTYFRQLLEM------GLEPDLITYNLLIDGLGKSKRLEEA 984

Query: 346  FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
               F++M   G  P+  TYN +   L K  +  E  K + E++   W+P        I  
Sbjct: 985  VSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRG 1044

Query: 406  LLDADEPEIAIEIWNYILENGILPLEASANEL 437
               +   + A   +  ++  G LP  ++  +L
Sbjct: 1045 YSVSGSTDSAYAAYGRMIVGGCLPNSSTYMQL 1076



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 129/285 (45%), Gaps = 6/285 (2%)

Query: 177  GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEE 235
            GV       NSL+  +   EN    A      +K++   PD  ++ +LL+   K   +EE
Sbjct: 750  GVSLKTGLYNSLICGLV-DENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEE 808

Query: 236  ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
              K   EM  R  +   +V  Y T +  L++ +++++A+     +  +   PT   +   
Sbjct: 809  MLKVQEEM-HRKGYESTYV-TYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPL 866

Query: 296  LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
            LD L+K      A  L++ M+  G     N  +YN ++       + + V   F  MV  
Sbjct: 867  LDGLLKAGRIEDAENLFNEMLEYGCK--ANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQ 924

Query: 356  GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 415
            G  PD  +Y +I + L K  ++++   +F ++++   +P  +     I  L  +   E A
Sbjct: 925  GINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEA 984

Query: 416  IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
            + ++N + + GI+P   + N L++ L   G+ ++  +  EE+L +
Sbjct: 985  VSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTK 1029


>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 135/279 (48%), Gaps = 5/279 (1%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N+++D L K G  ++  + + VM + GV  ++ T+ S+ D Y    + ++A   F+ 
Sbjct: 265 YTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNT 324

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           +S+ GV  +V + + +++ +C+ +        F     K + P+  +++ L++G  K G 
Sbjct: 325 ISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGR 384

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           + +      E+  R +  P +++ Y + L  L +  QVD+A+  L  MK E   P +  +
Sbjct: 385 ISDVWDLIDEINNRGQ--PANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTY 442

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  +D L K      A +++  ++  G+ L  N+ MY  +I  LC     D       QM
Sbjct: 443 TTLVDGLCKNGRLKDAQRIYQDLLCKGYPL--NIRMYTVMINGLCKEGFFDEALSLLSQM 500

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
             +G  PD++TY  +   L KN +  +  K   EMI  E
Sbjct: 501 EDNGCMPDAVTYETLISALFKNNKNGKAVKLLREMIARE 539



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 146/317 (46%), Gaps = 14/317 (4%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN- 207
           TF S+   +C  G+  EAV   + MS++ V  +V   N L+  +C+ E +  +A   L+ 
Sbjct: 231 TFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCK-EGEVKKATSVLSV 289

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            +K+ V+P+  ++  L++G+     V +A   F  +  R      +V +Y   +  L + 
Sbjct: 290 MIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLR--GVTPNVHSYSVMINGLCKN 347

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP-NL 326
           K VDEA+K  + M  +N  P    +S+ +D L K   S     +WD++  I     P N+
Sbjct: 348 KMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCK---SGRISDVWDLIDEINNRGQPANI 404

Query: 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 386
           I YN+++  LC N  VD       +M   G  PD  TY  + + L KN R+ + ++ + +
Sbjct: 405 ITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLCKNGRLKDAQRIYQD 464

Query: 387 MIKNEWQPTPLNCATAITM---LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
           ++   +   PLN      M   L      + A+ + + + +NG +P   +   L+  L  
Sbjct: 465 LLCKGY---PLNIRMYTVMINGLCKEGFFDEALSLLSQMEDNGCMPDAVTYETLISALFK 521

Query: 444 LGRLSDVRRFAEEMLNR 460
             +     +   EM+ R
Sbjct: 522 NNKNGKAVKLLREMIAR 538



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/315 (22%), Positives = 133/315 (42%), Gaps = 44/315 (13%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T  ++    C  GK  EA+   D +       D V+  +L++ +C+   +T  AL+ L +
Sbjct: 125 TVNTLLRGLCLNGKVKEALNFHDHVIRKRFHLDQVSYGTLINGLCK-SGETRAALQLLRK 183

Query: 209 VKKI--VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
           ++ +  V PD   +  +++ + K+  V +A   + EM+ +  +   +V+ + + +     
Sbjct: 184 IEGLLLVRPDVIMYTAIIDSFCKDKLVIDAYDLYSEMIVKKIY--PNVVTFNSLIYGFCI 241

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNL 326
             Q+ EA+  L  M   N  P +  F+  +D L K  +   A  +  +M+  G    PN+
Sbjct: 242 VGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVE--PNV 299

Query: 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 386
           + Y +++       +V+     F+ +   G  P+  +Y+++   L KNK V E  K F E
Sbjct: 300 VTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKE 359

Query: 387 M-IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
           M +KN                                    + P   + + L+ GL   G
Sbjct: 360 MHLKN------------------------------------MTPNTVTYSSLIDGLCKSG 383

Query: 446 RLSDVRRFAEEMLNR 460
           R+SDV    +E+ NR
Sbjct: 384 RISDVWDLIDEINNR 398



 Score = 41.6 bits (96), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 30/142 (21%), Positives = 66/142 (46%), Gaps = 3/142 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RGQ  +   +N +++ L KN + ++    +  MK++G+   + T+ ++ D  C  G+  +
Sbjct: 398 RGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLCKNGRLKD 457

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILL 224
           A   +  +   G   ++     +++ +C+ E     AL  L++++     PD  ++  L+
Sbjct: 458 AQRIYQDLLCKGYPLNIRMYTVMINGLCK-EGFFDEALSLLSQMEDNGCMPDAVTYETLI 516

Query: 225 EGWEKEGNVEEANKTFGEMVER 246
               K     +A K   EM+ R
Sbjct: 517 SALFKNNKNGKAVKLLREMIAR 538


>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
 gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 143/297 (48%), Gaps = 13/297 (4%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSFD 171
            +N+++D L K G+ E+  + +++M + G    P   T+ ++ D +C  G+ D+A   F 
Sbjct: 310 TFNVLIDALCKAGKMEEANHLLKLMIQRG--ESPDTFTYNTLIDGFCLEGRIDDARDLFV 367

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
            M   G+E D V+ N L++  C+          +   + K + P   ++  LL G  +EG
Sbjct: 368 SMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREG 427

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            V +A   FGEM +  +  PE    Y   L  L +   + EA++    ++  +  P+++ 
Sbjct: 428 KVRDAWNLFGEM-KVHDLTPESC-TYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQI 485

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           F+  +D L K      A +L++ +   G  L PN+I Y  +I  LC +  ++N    F  
Sbjct: 486 FNCLIDGLCKARKIEIARELFNRLSHEG--LEPNVITYTVMIHGLCKSGQLENAKDLFLG 543

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
           M   G  P+ +T+N +     +N  + +V +   EM + ++ P     A+ I++++D
Sbjct: 544 MEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPD----ASTISIVVD 596



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 150/333 (45%), Gaps = 8/333 (2%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           +L  + +I DS C  G  D+    F  M   G+  DVVA +S++  +C           F
Sbjct: 237 NLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLF 296

Query: 206 LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
              V + V P+  +F +L++   K G +EEAN     M++R E +P+    Y T +    
Sbjct: 297 NEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGE-SPD-TFTYNTLIDGFC 354

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN 325
              ++D+A      M+ +        ++  ++   K      A +L+  M  +   +MP 
Sbjct: 355 LEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREM--MCKEIMPT 412

Query: 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 385
           +I YN ++  L     V + +  F +M  H   P+S TYN++ + L KN  + E  + FH
Sbjct: 413 VITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFH 472

Query: 386 EMIKNEWQPT--PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
            +  +++QP+    NC   I  L  A + EIA E++N +   G+ P   +   ++ GL  
Sbjct: 473 YLENHDFQPSIQIFNC--LIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCK 530

Query: 444 LGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
            G+L + +     M  +      VT + L + F
Sbjct: 531 SGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGF 563



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 153/342 (44%), Gaps = 6/342 (1%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F    GRG      A++ ++  +   GR+E        M ++GV  ++ TF  + D+ C 
Sbjct: 261 FLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCK 320

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
           AGK +EA     +M   G   D    N+L+   C +         F++   K ++ D  S
Sbjct: 321 AGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVS 380

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           + +L+ G+ K G + EA K + EM+ + E  P  V+ Y T L  L R  +V +A      
Sbjct: 381 YNVLINGYCKSGRMVEAKKLYREMMCK-EIMPT-VITYNTLLTGLFREGKVRDAWNLFGE 438

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
           MK  +  P    ++  LD L K N  + A++L+  +    F   P++ ++N +I  LC  
Sbjct: 439 MKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQ--PSIQIFNCLIDGLCKA 496

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
             ++     F+++   G  P+ +TY ++   L K+ ++   +  F  M +    P  +  
Sbjct: 497 RKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTF 556

Query: 400 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 441
            T +      DE +  +E+   + E    P +AS   ++V L
Sbjct: 557 NTLMRGFCQNDEMQKVVELLQEMAEKDFSP-DASTISIVVDL 597



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/349 (21%), Positives = 152/349 (43%), Gaps = 13/349 (3%)

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206
           + +F ++  +     +Y + +  +  MS+ G+  D + +N L++  C   N+    L  L
Sbjct: 92  ISSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAPDFITLNILINCYCNL-NKVDFGLAVL 150

Query: 207 NR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
              +++   P+  +F  L++G      + EA     +MV R  + P +V+ Y T L  L 
Sbjct: 151 GEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMV-RMGYRP-NVVTYGTLLNGLC 208

Query: 266 RGKQVDEALKFLR-VMKGENCF-----PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG 319
                  A+K    ++ G   F     P L  +   +D L K        +L+  M G G
Sbjct: 209 MTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRG 268

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
            +  P+++ Y+++I  +C+    +     F++MV  G  P+ +T+N++ + L K  ++ E
Sbjct: 269 IS--PDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEE 326

Query: 380 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 439
                  MI+    P      T I         + A +++  +   GI     S N L+ 
Sbjct: 327 ANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLIN 386

Query: 440 GLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFD 488
           G    GR+ + ++   EM+ + I+   +T + L    + E + +RD ++
Sbjct: 387 GYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGK-VRDAWN 434



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/340 (22%), Positives = 139/340 (40%), Gaps = 16/340 (4%)

Query: 152 SIFDSYCGAG--KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           +   S C +G  K  EA   F+ +        + + N+LL A+ +      R  + ++  
Sbjct: 60  NFLKSNCKSGHIKRSEAFSVFNHLIDMQPTPPISSFNTLLGAVAK----IKRYFDVISLY 115

Query: 210 KKI----VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
           K++    + PD  +  IL+  +     V+      GEM+ R   +  + + + + +  L 
Sbjct: 116 KRMSLIGLAPDFITLNILINCYCNLNKVDFGLAVLGEMLRR--GHSPNTVTFTSLVKGLC 173

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV----GIGFN 321
            G ++ EA   LR M      P +  +   L+ L    ++  AV+L + M+    G G  
Sbjct: 174 LGSRISEATGLLRKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVT 233

Query: 322 LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 381
           + PNL+ Y  +I  LC +  +D     F +M   G  PD + Y+ I   +    R    +
Sbjct: 234 IKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAK 293

Query: 382 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 441
             F+EM+     P  +     I  L  A + E A  +   +++ G  P   + N L+ G 
Sbjct: 294 GLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGF 353

Query: 442 RNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
              GR+ D R     M ++ I    V+ + L   +    R
Sbjct: 354 CLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGR 393


>gi|224107981|ref|XP_002314676.1| predicted protein [Populus trichocarpa]
 gi|222863716|gb|EEF00847.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 111/437 (25%), Positives = 198/437 (45%), Gaps = 22/437 (5%)

Query: 51  SSARIICEILA--HASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR- 107
           S A  + EIL   + S D +  AL  +GI  T DLV ++L+   +    A+  F WA   
Sbjct: 105 SDAHKVGEILKKHYLSEDAVVEALNESGISATHDLVSQLLKRFSNQWLIALGVFIWAKNQ 164

Query: 108 -GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE-DGVLSLPTFASIFDSYCGAGKYDE 165
            G    P  +N M+D+LGK+ +F  MW+ V+ M   +G +SL T   +       GKY+E
Sbjct: 165 TGYVHKPEIYNSMIDILGKSRKFSLMWDLVQEMSGLNGYVSLVTMGKVMKRLVRDGKYNE 224

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQ---ENQTSRALEFLNRVKKIVDPDGDSFAI 222
           A+ +F  +   G+ +   A+N L+  + R    E+  + ALEF    +  +  D  S+ I
Sbjct: 225 AIDAFRGLEKFGLSKSTEAMNVLMDILARNGRVEDARAVALEF----EGCLTLDYRSYNI 280

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L  G+ K     +A KT  EM ER  ++P +V++Y  F+      K        L  M+ 
Sbjct: 281 LSSGYCKARMFGDARKTMEEMEER-GFHP-NVVSYTAFIEAYGEQKDFRNVEIILNEMQE 338

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
           + C P L  ++  +  L K      A+++ + +   GF L      Y ++I  LC +  +
Sbjct: 339 KGCPPDLITYTVYIRALGKARQINKALEICEEIKRNGFVLGTQF--YCSLIHSLCLSGRL 396

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
            + +  F+ +   G   D   Y  +        +     K  H+M ++  +P     A  
Sbjct: 397 KDAWNIFEDVEKQGVGRDLGMYKAMISAACALSQDESALKLLHKMEEDSCKPDVQTYAPL 456

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLV-GLRNLGRLSDVRRFAEEMLNRR 461
           + M       ++   + N++ EN +  ++    +LLV GLR  G+L     F +E + + 
Sbjct: 457 LKMCCRKKSMKMLKFLLNHMFENDV-SIDIVTYDLLVHGLRKQGKLKYACFFFQEAVLKG 515

Query: 462 IL----IYEVTMHKLKK 474
           ++     Y++ + +L++
Sbjct: 516 MVPCDKTYKILLEELER 532


>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
          Length = 1393

 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 90/400 (22%), Positives = 175/400 (43%), Gaps = 12/400 (3%)

Query: 55  IICEILAHASSDDIES---ALACTGIIPTPDLVHEVLQL---SYDSPSSAVDFFRWAGRG 108
           ++C + AH  + D       +  T + P     ++VL       D   + +   +   RG
Sbjct: 157 VVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRG 216

Query: 109 QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVM 168
             ++ + +N+ +  L + GR  +    V  M+   V  + T+ ++    C      EA+ 
Sbjct: 217 MSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMH 276

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL-NRVKKIVDPDGDSFAILLEGW 227
               M   G   D    N+++   C+  +    A E L + V K   PD  ++  L+ G 
Sbjct: 277 YLRRMMNQGCLPDDFTYNTIIDGYCKI-SMVQEATELLKDAVFKGFVPDQVTYCSLINGL 335

Query: 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
             EG+VE A + F E   +    P+ ++ Y + +  L     +  AL+ +  M  E C P
Sbjct: 336 CAEGDVERALELFNEAQAK-GIKPD-IVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHP 393

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFR 347
            ++ ++  ++ L K+ + + A  + +  +  G+  +P++  +N +I   C    +D+  +
Sbjct: 394 DIQTYNIVINGLCKMGNISDATVVMNDAIMKGY--LPDVFTFNTLIDGYCKRLKLDSALQ 451

Query: 348 FFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 407
             ++M  +G  PD++TYN +   L K  +V+EV + F EMI     P P+     I    
Sbjct: 452 LVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFC 511

Query: 408 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
            +++ E A ++   + + G+ P   S N L+ G    G L
Sbjct: 512 RSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDL 551



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 146/349 (41%), Gaps = 11/349 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++  L K    ++  + +R M   G L    T+ +I D YC      EA        
Sbjct: 258 YNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAV 317

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNV 233
             G   D V   SL++ +C  E    RALE  N  + K + PD   +  L++G   +G +
Sbjct: 318 FKGFVPDQVTYCSLINGLC-AEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLI 376

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR--VMKGENCFPTLKF 291
             A +   EM E  E     +  Y   +  L +   + +A   +   +MKG    P +  
Sbjct: 377 LHALQVMNEMAE--EGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGY--LPDVFT 432

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           F+  +D   K      A+QL + M   G  + P+ I YN+V+  LC    V+ V   F +
Sbjct: 433 FNTLIDGYCKRLKLDSALQLVERMWEYG--IAPDTITYNSVLNGLCKAGKVNEVNETFQE 490

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M+  G  P+ +TYN++ E   ++ ++ E  K   +M +    P  ++  T I       +
Sbjct: 491 MILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGD 550

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
            E A  ++  + E G      + N L+        +    +  +EML++
Sbjct: 551 LEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSK 599



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 141/336 (41%), Gaps = 10/336 (2%)

Query: 98  AVDFFRWA-GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFD 155
           A++ F  A  +G +     +N +V  L   G        +  M E+G    + T+  + +
Sbjct: 344 ALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVIN 403

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VD 214
             C  G   +A +  +   M G   DV   N+L+   C++    S AL+ + R+ +  + 
Sbjct: 404 GLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDS-ALQLVERMWEYGIA 462

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEA 273
           PD  ++  +L G  K G V E N+TF EM+ +    NP   + Y   +    R  +++EA
Sbjct: 463 PDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNP---ITYNILIENFCRSNKMEEA 519

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
            K +  M  E   P    F+  +    +  D   A  L+  +   G++   +   +N +I
Sbjct: 520 SKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATAD--TFNTLI 577

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
           G      ++    + FD+M+  G   DS TY ++ +   K   V        EMIK  + 
Sbjct: 578 GAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFI 637

Query: 394 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
           P+       I  L        A+ I + +++ G++P
Sbjct: 638 PSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVP 673



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 39/337 (11%)

Query: 158 CG---AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD 214
           CG    G   +A   FD M    V  ++ A N +L A+C++ +     L     +++ + 
Sbjct: 159 CGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMS 218

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
            +  ++ I + G  + G + EA +    M  R    P+ V+ Y T +  L +     EA+
Sbjct: 219 INLFTYNIWIRGLCEAGRLPEAVRLVDGM--RAYAVPD-VVTYNTLIRGLCKKSMPQEAM 275

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF-------------- 320
            +LR M  + C P    ++  +D   K++    A +L    V  GF              
Sbjct: 276 HYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGL 335

Query: 321 -------------------NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS 361
                               + P++++YN+++  LC    + +  +  ++M   G  PD 
Sbjct: 336 CAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDI 395

Query: 362 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 421
            TYN++   L K   + +     ++ I   + P      T I       + + A+++   
Sbjct: 396 QTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVER 455

Query: 422 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
           + E GI P   + N +L GL   G++++V    +EM+
Sbjct: 456 MWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMI 492



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 78/363 (21%), Positives = 129/363 (35%), Gaps = 42/363 (11%)

Query: 148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN 207
           P + +   +Y  AG+  +AV +F+ M +        A N+++ A+            ++ 
Sbjct: 51  PLYVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVR 110

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            +   V PD  +  I L  +        A +    +  R        +AY T +  L   
Sbjct: 111 MLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHR------GAVAYCTVVCGLYAH 164

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD--IMVGIGFNL--- 322
               +A +    M   + FP L  F+  L  L K  D   A  L    I  G+  NL   
Sbjct: 165 GHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTY 224

Query: 323 ---------------------------MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
                                      +P+++ YN +I  LC          +  +M+  
Sbjct: 225 NIWIRGLCEAGRLPEAVRLVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQ 284

Query: 356 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 415
           G  PD  TYN I +   K   V E  +   + +   + P  +   + I  L    + E A
Sbjct: 285 GCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERA 344

Query: 416 IEIWNYILENGILPLEASANELLVGLRNLG----RLSDVRRFAEEMLNRRILIYEVTMHK 471
           +E++N     GI P     N L+ GL   G     L  +   AEE  +  I  Y + ++ 
Sbjct: 345 LELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVING 404

Query: 472 LKK 474
           L K
Sbjct: 405 LCK 407


>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
 gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
          Length = 768

 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 159/366 (43%), Gaps = 8/366 (2%)

Query: 98  AVDFFRWA-GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFD 155
           A+ F + A   G R   + +N +V+ L K G  +     V  M   G+   + T+ S+  
Sbjct: 292 ALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLIS 351

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVD 214
             C  G+ +EAV   D M       + V  N+++S++C+ EN+   A E    +  K + 
Sbjct: 352 GLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCK-ENRVDEATEIARLLTSKGIL 410

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           PD  +F  L++G     N + A   F EM  +    P+    Y   + +L   ++++EAL
Sbjct: 411 PDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGK-GCRPDE-FTYNMLIDSLCSSRKLEEAL 468

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
             L+ M+   C   +  ++  +D   K      A +++D M   G +   + + YN +I 
Sbjct: 469 NLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVS--RDSVTYNTLID 526

Query: 335 LLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
            LC +  V++  +  DQM+  G  PD  TYN +     K   + +       M  +   P
Sbjct: 527 GLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNP 586

Query: 395 TPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 454
             +  AT I+ L  A   ++A  +   I   G++    + N ++  L    R  +  R  
Sbjct: 587 DIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHAYNPVIQALFKRNRTHEAMRLF 646

Query: 455 EEMLNR 460
            EML++
Sbjct: 647 REMLDK 652



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/368 (22%), Positives = 158/368 (42%), Gaps = 37/368 (10%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T   + + +C  G+ D+A+         G   D    N+L++ +C+       A+E ++ 
Sbjct: 275 TVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKI-GHAKHAMEVVDA 333

Query: 209 -VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            +   +DPD  ++  L+ G  K G +EEA K   +MV R + +P  V  Y   + +L + 
Sbjct: 334 MLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSR-DCSPNAV-TYNAIISSLCKE 391

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG-------- 319
            +VDEA +  R++  +   P +  F++ +  L   ++   A+ L++ M G G        
Sbjct: 392 NRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTY 451

Query: 320 ----------------FNLMP---------NLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
                            NL+          N+++YN +I   C N  ++     FD+M  
Sbjct: 452 NMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMEL 511

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 414
            G   DS+TYN + + L K+KRV +  +   +MI    +P      + +T      + + 
Sbjct: 512 QGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKK 571

Query: 415 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKK 474
           A +I   +  +G  P   +   L+ GL   GR+    R    +  + +++     + + +
Sbjct: 572 AADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHAYNPVIQ 631

Query: 475 AFYNESRS 482
           A +  +R+
Sbjct: 632 ALFKRNRT 639



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 108/458 (23%), Positives = 189/458 (41%), Gaps = 56/458 (12%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYA--WNLMVDVLGKNGRFEQMWNAVR 137
           TP  + E L+   D   +A+  F WA +     P +  +  ++  LGK G FE M   + 
Sbjct: 63  TPKQLIETLRRQTDE-VAALRVFNWASKQPNFVPSSSVYEEILRKLGKAGSFEYMRRVLE 121

Query: 138 VMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVM----------------------- 173
            MK  G       F    +SY     YDE V    VM                       
Sbjct: 122 EMKLSGCEFDRGIFLIFVESYGKFELYDEVVGIVKVMEDEYRIKPDTRFYNVLLNVLVDA 181

Query: 174 -------SMHG------VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDS 219
                  S H       +  DV   N L+ A+C+  +Q   A+  +  +    + PD  +
Sbjct: 182 NKLKLVESAHSSMVRRRIRHDVSTFNILIKALCKA-HQVRPAILMMEEMPSYGLSPDETT 240

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           F  +++G+ + GN++ A +   +MVE     P   +     +    +  ++D+AL F++ 
Sbjct: 241 FTTIMQGYIEGGNLDGALRIKEQMVEY--GCPCTDVTVNVLINGFCKQGRIDQALSFIQE 298

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
              E   P    ++  ++ L K+  + HA+++ D M+  G +  P++  YN++I  LC  
Sbjct: 299 AVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLD--PDIYTYNSLISGLCKL 356

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
            +++   +  DQMV     P+++TYN I   L K  RV E  +    +      P     
Sbjct: 357 GEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTF 416

Query: 400 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM-L 458
            + I  L  +   + A++++  +   G  P E + N L+  L +  +L +     +EM L
Sbjct: 417 NSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMEL 476

Query: 459 N---RRILIYEVTMHKLKKAFYNESR--SMRDIFDSLE 491
           N   R ++IY    + L   F    R     +IFD +E
Sbjct: 477 NGCARNVVIY----NTLIDGFCKNKRIEEAEEIFDEME 510



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 142/342 (41%), Gaps = 18/342 (5%)

Query: 112 SPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVM 168
           SP A  +N ++  L K  R ++     R++   G+L  + TF S+    C +  +  A+ 
Sbjct: 375 SPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMD 434

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS-----FAIL 223
            F+ M   G   D    N L+ ++C     +SR LE    + K ++ +G +     +  L
Sbjct: 435 LFEEMKGKGCRPDEFTYNMLIDSLC-----SSRKLEEALNLLKEMELNGCARNVVIYNTL 489

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           ++G+ K   +EEA + F EM    +      + Y T +  L + K+V++A + +  M  E
Sbjct: 490 IDGFCKNKRIEEAEEIFDEM--ELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIME 547

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
              P    +++ L    K  D   A  +   M   G N  P+++ Y  +I  LC    V 
Sbjct: 548 GLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCN--PDIVTYATLISGLCKAGRVQ 605

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
              R    +   G       YN + + L K  R HE  + F EM+     P  +      
Sbjct: 606 VASRLLRSIQMKGMVLTPHAYNPVIQALFKRNRTHEAMRLFREMLDKSEPPDAITYKIVY 665

Query: 404 TMLLDADEP-EIAIEIWNYILENGILPLEASANELLVGLRNL 444
             L +   P   A++    ++E G +P  +S   L  GL  L
Sbjct: 666 RGLCNGGGPIGEAVDFTVEMIERGNIPEFSSFVMLAEGLCTL 707



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 146/312 (46%), Gaps = 9/312 (2%)

Query: 65  SDDIESALACTGIIPTPDLVHEVLQ---LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVD 121
           + +I   L   GI+P     + ++Q   LS +  S+   F    G+G R   + +N+++D
Sbjct: 397 ATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLID 456

Query: 122 VLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQ 180
            L  + + E+  N ++ M+ +G   ++  + ++ D +C   + +EA   FD M + GV +
Sbjct: 457 SLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSR 516

Query: 181 DVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTF 240
           D V  N+L+  +C+ +     A      + + + PD  ++  LL  + K G++++A    
Sbjct: 517 DSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIV 576

Query: 241 GEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV 300
             M      NP+ ++ Y T +  L +  +V  A + LR ++ +    T   ++  +  L 
Sbjct: 577 QTMTSS-GCNPD-IVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHAYNPVIQALF 634

Query: 301 KLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD-VDNVFRFFDQMVFHGAFP 359
           K N +  A++L+  M  +  +  P+ I Y  V   LCN    +     F  +M+  G  P
Sbjct: 635 KRNRTHEAMRLFREM--LDKSEPPDAITYKIVYRGLCNGGGPIGEAVDFTVEMIERGNIP 692

Query: 360 DSLTYNMIFECL 371
           +  ++ M+ E L
Sbjct: 693 EFSSFVMLAEGL 704



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 144/353 (40%), Gaps = 14/353 (3%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKE----DGVLSLPTFASIFDSYCGAGKYDEAVMS 169
           Y +N ++  L K G  E+   AV+++ +    D   +  T+ +I  S C   + DEA   
Sbjct: 344 YTYNSLISGLCKLGEIEE---AVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEI 400

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWE 228
             +++  G+  DV   NSL+  +C   N  S A++    +K K   PD  ++ +L++   
Sbjct: 401 ARLLTSKGILPDVCTFNSLIQGLCLSSNHKS-AMDLFEEMKGKGCRPDEFTYNMLIDSLC 459

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
               +EEA     EM         +V+ Y T +    + K+++EA +    M+ +     
Sbjct: 460 SSRKLEEALNLLKEM--ELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRD 517

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
              ++  +D L K      A QL D M+  G  L P+   YN+++   C   D+      
Sbjct: 518 SVTYNTLIDGLCKSKRVEDAAQLMDQMIMEG--LRPDKFTYNSLLTHFCKTGDIKKAADI 575

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
              M   G  PD +TY  +   L K  RV    +    +       TP      I  L  
Sbjct: 576 VQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHAYNPVIQALFK 635

Query: 409 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR-LSDVRRFAEEMLNR 460
            +    A+ ++  +L+    P   +   +  GL N G  + +   F  EM+ R
Sbjct: 636 RNRTHEAMRLFREMLDKSEPPDAITYKIVYRGLCNGGGPIGEAVDFTVEMIER 688


>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
          Length = 602

 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 90/409 (22%), Positives = 170/409 (41%), Gaps = 45/409 (11%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           R +  SP    +N+M+  L   G+ +     +  +  D    ++ T+  + ++    G  
Sbjct: 185 RSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGV 244

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAI 222
           DEA+   D M   G++ D+   N+++  +C+ E    RA E +  ++ K  +PD  S+ I
Sbjct: 245 DEALKLMDEMLSRGLKPDMFTYNTIIRGMCK-EGMVDRAFEMVRNLELKGSEPDVISYNI 303

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           LL     +G  EE  K   +M    + +P +V+ Y   + TL R  +++EA+  L++MK 
Sbjct: 304 LLRALLNQGKWEEGEKLMTKMFSE-KCDP-NVVTYSILITTLCRDGKIEEAMNLLKLMKE 361

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
           +   P    +   +    +      A++  + M+  G   +P+++ YN V+  LC N   
Sbjct: 362 KGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDG--CLPDIVNYNTVLATLCKNGKA 419

Query: 343 DNVFRFFD-----------------------------------QMVFHGAFPDSLTYNMI 367
           D     F                                    +M+ +G  PD +TYN +
Sbjct: 420 DQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSM 479

Query: 368 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 427
             CL +   V E  +   +M   E+ P+ +     +     A   E AI +   ++ NG 
Sbjct: 480 ISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGC 539

Query: 428 LPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
            P E +   L+ G+   G  ++    A +++ R   I E +  +L + F
Sbjct: 540 RPNETTYTVLIEGIGFAGYRAEAMELANDLV-RIDAISEYSFKRLHRTF 587



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 139/307 (45%), Gaps = 5/307 (1%)

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI 212
           IF   C +G Y E++   + M   G   DV+    L+       N   +A+  +  ++K 
Sbjct: 95  IFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRN-IPKAVRVMEILEKF 153

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
             PD  ++  L+ G+ K   +++A +    M  + +++P+ V  Y   + +L    ++D 
Sbjct: 154 GQPDVFAYNALINGFCKMNRIDDATRVLDRMRSK-DFSPDTV-TYNIMIGSLCSRGKLDL 211

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAV 332
           ALK L  +  +NC PT+  ++  ++  +       A++L D M+  G  L P++  YN +
Sbjct: 212 ALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRG--LKPDMFTYNTI 269

Query: 333 IGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 392
           I  +C    VD  F     +   G+ PD ++YN++   L+   +  E EK   +M   + 
Sbjct: 270 IRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKC 329

Query: 393 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 452
            P  +  +  IT L    + E A+ +   + E G+ P   S + L+      GRL     
Sbjct: 330 DPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIE 389

Query: 453 FAEEMLN 459
           F E M++
Sbjct: 390 FLETMIS 396



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 140/344 (40%), Gaps = 40/344 (11%)

Query: 135 AVRVMK---EDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
           AVRVM+   + G   +  + ++ + +C   + D+A    D M       D V  N ++ +
Sbjct: 143 AVRVMEILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGS 202

Query: 192 ICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER---- 246
           +C +  +   AL+ LN+ +     P   ++ IL+E    EG V+EA K   EM+ R    
Sbjct: 203 LCSR-GKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKP 261

Query: 247 --FEWNP---------------------------EHVLAYETFLITLIRGKQVDEALKFL 277
             F +N                              V++Y   L  L+   + +E  K +
Sbjct: 262 DMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLM 321

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337
             M  E C P +  +S  +  L +      A+ L  +M   G  L P+   Y+ +I   C
Sbjct: 322 TKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKG--LTPDAYSYDPLIAAFC 379

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
               +D    F + M+  G  PD + YN +   L KN +  +  + F ++ +    P   
Sbjct: 380 REGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSS 439

Query: 398 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 441
           +  T  + L  + +   A+ +   ++ NGI P E + N ++  L
Sbjct: 440 SYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCL 483



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 105/239 (43%), Gaps = 17/239 (7%)

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG----KQVDEALKFLRVMK--G 282
           + GN  E+      MV R  +NP+ +L  +     LI+G    + + +A++ + +++  G
Sbjct: 101 RSGNYIESLHLLETMV-RKGYNPDVILCTK-----LIKGFFTLRNIPKAVRVMEILEKFG 154

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
           +   P +  ++  ++   K+N    A ++ D M    F+  P+ + YN +IG LC+   +
Sbjct: 155 Q---PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFS--PDTVTYNIMIGSLCSRGKL 209

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
           D   +  +Q++     P  +TY ++ E  +    V E  K   EM+    +P      T 
Sbjct: 210 DLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTI 269

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461
           I  +      + A E+   +   G  P   S N LL  L N G+  +  +   +M + +
Sbjct: 270 IRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEK 328


>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
          Length = 1380

 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/400 (22%), Positives = 175/400 (43%), Gaps = 12/400 (3%)

Query: 55  IICEILAHASSDDIES---ALACTGIIPTPDLVHEVLQL---SYDSPSSAVDFFRWAGRG 108
           ++C + AH  + D       +  T + P     ++VL       D   + +   +   RG
Sbjct: 158 VVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRG 217

Query: 109 QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVM 168
             ++ + +N+ +  L + GR  +    V  M+   V  + T+ ++    C      EA+ 
Sbjct: 218 MSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMH 277

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL-NRVKKIVDPDGDSFAILLEGW 227
               M   G   D    N+++   C+  +    A E L + V K   PD  ++  L+ G 
Sbjct: 278 YLRRMMNQGCLPDDFTYNTIIDGYCKI-SMVQEATELLKDAVFKGFVPDQVTYCSLINGL 336

Query: 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
             EG+VE A + F E   +    P+ ++ Y + +  L     +  AL+ +  M  E C P
Sbjct: 337 CAEGDVERALELFNEAQAK-GIKPD-IVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHP 394

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFR 347
            ++ ++  ++ L K+ + + A  + +  +  G+  +P++  +N +I   C    +D+  +
Sbjct: 395 DIQTYNIVINGLCKMGNISDATVVMNDAIMKGY--LPDVFTFNTLIDGYCKRLKLDSALQ 452

Query: 348 FFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 407
             ++M  +G  PD++TYN +   L K  +V+EV + F EMI     P P+     I    
Sbjct: 453 LVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFC 512

Query: 408 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
            +++ E A ++   + + G+ P   S N L+ G    G L
Sbjct: 513 RSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDL 552



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 146/349 (41%), Gaps = 11/349 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++  L K    ++  + +R M   G L    T+ +I D YC      EA        
Sbjct: 259 YNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAV 318

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNV 233
             G   D V   SL++ +C  E    RALE  N  + K + PD   +  L++G   +G +
Sbjct: 319 FKGFVPDQVTYCSLINGLC-AEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLI 377

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR--VMKGENCFPTLKF 291
             A +   EM E  E     +  Y   +  L +   + +A   +   +MKG    P +  
Sbjct: 378 LHALQVMNEMAE--EGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGY--LPDVFT 433

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           F+  +D   K      A+QL + M   G  + P+ I YN+V+  LC    V+ V   F +
Sbjct: 434 FNTLIDGYCKRLKLDSALQLVERMWEYG--IAPDTITYNSVLNGLCKAGKVNEVNETFQE 491

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M+  G  P+ +TYN++ E   ++ ++ E  K   +M +    P  ++  T I       +
Sbjct: 492 MILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGD 551

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
            E A  ++  + E G      + N L+        +    +  +EML++
Sbjct: 552 LEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSK 600



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 141/336 (41%), Gaps = 10/336 (2%)

Query: 98  AVDFFRWA-GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFD 155
           A++ F  A  +G +     +N +V  L   G        +  M E+G    + T+  + +
Sbjct: 345 ALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVIN 404

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VD 214
             C  G   +A +  +   M G   DV   N+L+   C++    S AL+ + R+ +  + 
Sbjct: 405 GLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDS-ALQLVERMWEYGIA 463

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEA 273
           PD  ++  +L G  K G V E N+TF EM+ +    NP   + Y   +    R  +++EA
Sbjct: 464 PDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNP---ITYNILIENFCRSNKMEEA 520

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
            K +  M  E   P    F+  +    +  D   A  L+  +   G++   +   +N +I
Sbjct: 521 SKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATAD--TFNTLI 578

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
           G      ++    + FD+M+  G   DS TY ++ +   K   V        EMIK  + 
Sbjct: 579 GAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFI 638

Query: 394 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
           P+       I  L        A+ I + +++ G++P
Sbjct: 639 PSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVP 674



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 39/337 (11%)

Query: 158 CG---AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD 214
           CG    G   +A   FD M    V  ++ A N +L A+C++ +     L     +++ + 
Sbjct: 160 CGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMS 219

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
            +  ++ I + G  + G + EA +    M  R    P+ V+ Y T +  L +     EA+
Sbjct: 220 INLFTYNIWIRGLCEAGRLPEAVRLVDGM--RAYAVPD-VVTYNTLIRGLCKKSMPQEAM 276

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF-------------- 320
            +LR M  + C P    ++  +D   K++    A +L    V  GF              
Sbjct: 277 HYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGL 336

Query: 321 -------------------NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS 361
                               + P++++YN+++  LC    + +  +  ++M   G  PD 
Sbjct: 337 CAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDI 396

Query: 362 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 421
            TYN++   L K   + +     ++ I   + P      T I       + + A+++   
Sbjct: 397 QTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVER 456

Query: 422 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
           + E GI P   + N +L GL   G++++V    +EM+
Sbjct: 457 MWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMI 493



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 78/363 (21%), Positives = 129/363 (35%), Gaps = 42/363 (11%)

Query: 148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN 207
           P + +   +Y  AG+  +AV +F+ M +        A N+++ A+            ++ 
Sbjct: 52  PLYVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVR 111

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            +   V PD  +  I L  +        A +    +  R        +AY T +  L   
Sbjct: 112 MLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHR------GAVAYCTVVCGLYAH 165

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD--IMVGIGFNL--- 322
               +A +    M   + FP L  F+  L  L K  D   A  L    I  G+  NL   
Sbjct: 166 GHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTY 225

Query: 323 ---------------------------MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
                                      +P+++ YN +I  LC          +  +M+  
Sbjct: 226 NIWIRGLCEAGRLPEAVRLVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQ 285

Query: 356 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 415
           G  PD  TYN I +   K   V E  +   + +   + P  +   + I  L    + E A
Sbjct: 286 GCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERA 345

Query: 416 IEIWNYILENGILPLEASANELLVGLRNLG----RLSDVRRFAEEMLNRRILIYEVTMHK 471
           +E++N     GI P     N L+ GL   G     L  +   AEE  +  I  Y + ++ 
Sbjct: 346 LELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVING 405

Query: 472 LKK 474
           L K
Sbjct: 406 LCK 408


>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
 gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
          Length = 528

 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 146/315 (46%), Gaps = 17/315 (5%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T++++ D  C AG+  +AV  F+ MS        +  NSL+   CR  +      E +  
Sbjct: 216 TYSTVIDGLCKAGRLRDAVDIFEEMS---CAPTAITYNSLIGGYCRAGDMD----EAIRL 268

Query: 209 VKKIVD----PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           + K+VD    PD  ++  L+  + K G +++A + F +MV   + +P+ V+ + + +  L
Sbjct: 269 LGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVAN-KLSPD-VVTFTSLVDGL 326

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
               ++++AL+ L  +    C PT+  ++  +D   K N    A +L       GF  +P
Sbjct: 327 CGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGF--VP 384

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGA-FPDSLT-YNMIFECLIKNKRVHEVEK 382
           N + YN ++   C     D   ++ DQ+   G   P S+  Y +I + L ++ R  +  +
Sbjct: 385 NTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQ 444

Query: 383 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 442
           F+ EMI+  + P     AT +  L  A +P+ A E+   +++ G  P   + + ++    
Sbjct: 445 FYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYC 504

Query: 443 NLGRLSDVRRFAEEM 457
             G +      A E+
Sbjct: 505 RAGMIQKADELASEL 519



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 68/310 (21%), Positives = 136/310 (43%), Gaps = 9/310 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T++++ D  C   + DEAV   + M+  G    VV  NS+++  CR   +   A  F+ +
Sbjct: 111 TYSALVDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRA-RRVDEAHGFMEQ 169

Query: 209 -VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            V +   PD  ++  L+ G+ K  +V    +  GE V R  + P+ ++ Y T +  L + 
Sbjct: 170 MVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGE-VTRRGFTPD-IVTYSTVIDGLCKA 227

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
            ++ +A+     M   +C PT   +++ +    +  D   A++L   MV       P+++
Sbjct: 228 GRLRDAVDIFEEM---SCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVD--DKCAPDVV 282

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            Y  ++   C    +D+ +  F QMV +   PD +T+  + + L    R+ +  +   E+
Sbjct: 283 TYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEI 342

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
            +    PT       +     A++   A E+       G +P   + N L+ G    GR 
Sbjct: 343 TRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRT 402

Query: 448 SDVRRFAEEM 457
               ++ +++
Sbjct: 403 DQALQYLDQL 412



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 131/312 (41%), Gaps = 12/312 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           ++ ++D L K GR   + +AV + +E     +  T+ S+   YC AG  DEA+     M 
Sbjct: 217 YSTVIDGLCKAGR---LRDAVDIFEEMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMV 273

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
                 DVV   +L+SA C+          F   V   + PD  +F  L++G   EG +E
Sbjct: 274 DDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRME 333

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           +A +   E+  R    P  +  Y   +    +  QV +A + +   +     P    ++ 
Sbjct: 334 DALELLEEITRR--GCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNI 391

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
            +    +   +  A+Q  D +   G     ++ MY  ++  LC +   D+  +F+++M+ 
Sbjct: 392 LVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQ 451

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT------MLLD 408
            G  P + T+  +   L K  +  +  +   EMIK    P P  C   ++      M+  
Sbjct: 452 RGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQK 511

Query: 409 ADEPEIAIEIWN 420
           ADE    + ++ 
Sbjct: 512 ADELASELRLYT 523



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 71/359 (19%), Positives = 142/359 (39%), Gaps = 11/359 (3%)

Query: 128 RFEQMWNAVRVMKE----DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV 183
           +  ++ +AV+V++E      V    T   +  S C   + D+A    + M   G+  + +
Sbjct: 51  KARRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAI 110

Query: 184 AVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
             ++L+  +C+ E             ++   P   ++  ++ G+ +   V+EA+    +M
Sbjct: 111 TYSALVDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQM 170

Query: 244 VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303
           V   E     ++ Y   +    + + V   L+ L  +      P +  +S  +D L K  
Sbjct: 171 VA--EGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAG 228

Query: 304 DSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLT 363
               AV +++ M     +  P  I YN++IG  C   D+D   R   +MV     PD +T
Sbjct: 229 RLRDAVDIFEEM-----SCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVT 283

Query: 364 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 423
           Y  +     K  R+ +  + F +M+ N+  P  +   + +  L      E A+E+   I 
Sbjct: 284 YTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEIT 343

Query: 424 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 482
             G  P   + N ++ G     ++        +  +R  +   VT + L        R+
Sbjct: 344 RRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRT 402



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 61/158 (38%), Gaps = 1/158 (0%)

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           P  +++N VIG LC    + +    + QM      PD LTY  +   L K +R+ +  + 
Sbjct: 3   PGTLLHNVVIGGLCRAGRLRHALGVYRQM-NDAHPPDFLTYTKLVHGLSKARRLRDAVQV 61

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
             EM+     P        +  L   D  + A E+   +L  G+     + + L+ GL  
Sbjct: 62  LQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCK 121

Query: 444 LGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
             RL +     E M  R      VT + +   F    R
Sbjct: 122 CERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARR 159



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 98/249 (39%), Gaps = 16/249 (6%)

Query: 249 WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHA 308
            NP  +L +   +  L R  ++  AL   R M   +  P    ++  +  L K      A
Sbjct: 1   MNPGTLL-HNVVIGGLCRAGRLRHALGVYRQMNDAH-PPDFLTYTKLVHGLSKARRLRDA 58

Query: 309 VQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIF 368
           VQ+   MV      +P+      V+  LC  D VD+     ++M+  G   +++TY+ + 
Sbjct: 59  VQVLQEMVSA--RHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALV 116

Query: 369 ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 428
           + L K +R+ E       M +    PT +   + IT    A   + A      ++  G  
Sbjct: 117 DGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCH 176

Query: 429 PLEASANELLVGL---RNLGR----LSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
           P   +   L+ G    R++GR    L +V R         I+ Y   +  L KA     R
Sbjct: 177 PDIITYTALIGGFCKSRDVGRGLELLGEVTRRG---FTPDIVTYSTVIDGLCKA--GRLR 231

Query: 482 SMRDIFDSL 490
              DIF+ +
Sbjct: 232 DAVDIFEEM 240


>gi|302756535|ref|XP_002961691.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
 gi|300170350|gb|EFJ36951.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
          Length = 545

 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 104/442 (23%), Positives = 194/442 (43%), Gaps = 55/442 (12%)

Query: 64  SSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLS--PYAWNLMVD 121
           + + IE +L   G I  PDLV +V+    D P++A + F+WAG+  + +   +  N ++ 
Sbjct: 52  AGEGIEKSLGLYGDILVPDLVGKVIHRIPD-PNTAWEVFQWAGKQSKFTHNRFTCNNLLS 110

Query: 122 VLGKNGRFEQMW-----NAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176
           V  K  R E        +   V + D V    ++ ++ + +  AG   +A+  F  M   
Sbjct: 111 VYVKARRVEDAHLFFQSHMKNVFEPDEV----SYNTLMNGFFKAGDVKKALALFGEMKDS 166

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA 236
           G+   + + N +L  +C    + S A E    +  I  P+  S+ I+++G  K   V++A
Sbjct: 167 GIAV-LRSHNIVLRGLC-SGGKISMAWEVFKDMSGIFSPNLISYTIMIDGLCKSRKVDKA 224

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
              F +MV++  + P+ V+ Y   +  L + ++V EA       + + C PT+  ++  +
Sbjct: 225 ITLFKQMVDKAIY-PD-VVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMI 282

Query: 297 DILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG 356
           D L K     +A+ L+D MV    +L P++  Y+A+I  L  ++  +  +  +++M+  G
Sbjct: 283 DGLCKCGRIENALTLYDDMVREP-HLKPDMFTYSALINGLNLSNRGEKAYELYEEMLDTG 341

Query: 357 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEM-IKNEWQPTPLNCATAITMLLDADEPEIA 415
             PD +TYN + + L K+    +  + F +M + N   P  +     I      D     
Sbjct: 342 CSPDVVTYNTLLDGLCKSGCEDKAMEIFRKMGVGNVCDPNVITYTVLIDRFCKVD----- 396

Query: 416 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKA 475
                                         RL D  + A+EM  R +L   VT   + + 
Sbjct: 397 ------------------------------RLGDAVKLAKEMEGRSLLPDAVTFTTVIQK 426

Query: 476 FYNESR--SMRDIFDSLERRCK 495
              ESR     ++F+S+ + CK
Sbjct: 427 LCKESRIDEAHELFESIGKTCK 448



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 144/344 (41%), Gaps = 7/344 (2%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVLS--LPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           N+++  L   G+    W   + M   G+ S  L ++  + D  C + K D+A+  F  M 
Sbjct: 175 NIVLRGLCSGGKISMAWEVFKDMS--GIFSPNLISYTIMIDGLCKSRKVDKAITLFKQMV 232

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
              +  DVV   +L+  + +Q         F     K   P   ++  +++G  K G +E
Sbjct: 233 DKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIE 292

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
            A   + +MV      P+ +  Y   +  L    + ++A +    M    C P +  ++ 
Sbjct: 293 NALTLYDDMVREPHLKPD-MFTYSALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNT 351

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
            LD L K      A++++  M G+G    PN+I Y  +I   C  D + +  +   +M  
Sbjct: 352 LLDGLCKSGCEDKAMEIFRKM-GVGNVCDPNVITYTVLIDRFCKVDRLGDAVKLAKEMEG 410

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 414
               PD++T+  + + L K  R+ E  + F E I    +P  +   T +         + 
Sbjct: 411 RSLLPDAVTFTTVIQKLCKESRIDEAHELF-ESIGKTCKPDSVLFNTMLAGYCKITRIDD 469

Query: 415 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
           A ++ + +L++G  P  A+   L+ G    GR SD      EM+
Sbjct: 470 AKKLHDRMLDSGCAPTLATYTALVTGFCRTGRYSDALIMYHEMI 513



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/283 (20%), Positives = 129/283 (45%), Gaps = 8/283 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +  ++D LGK  R ++ ++     +  G   ++ T+ ++ D  C  G+ + A+  +D M
Sbjct: 242 TYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDM 301

Query: 174 SMH-GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEG 231
                ++ D+   ++L++ +    N+  +A E    +      PD  ++  LL+G  K G
Sbjct: 302 VREPHLKPDMFTYSALINGL-NLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSG 360

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
             ++A + F +M      +P +V+ Y   +    +  ++ +A+K  + M+G +  P    
Sbjct: 361 CEDKAMEIFRKMGVGNVCDP-NVITYTVLIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVT 419

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           F+  +  L K +    A +L++    IG    P+ +++N ++   C    +D+  +  D+
Sbjct: 420 FTTVIQKLCKESRIDEAHELFE---SIGKTCKPDSVLFNTMLAGYCKITRIDDAKKLHDR 476

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
           M+  G  P   TY  +     +  R  +    +HEMI+  + P
Sbjct: 477 MLDSGCAPTLATYTALVTGFCRTGRYSDALIMYHEMIEMGFPP 519



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/319 (21%), Positives = 141/319 (44%), Gaps = 10/319 (3%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++ +M+D L K+ + ++     + M +  +   + T+ ++ D      +  EA   F+  
Sbjct: 207 SYTIMIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEA 266

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK--IVDPDGDSFAILLEGWEKEG 231
              G    VV  N+++  +C+   +   AL   + + +   + PD  +++ L+ G     
Sbjct: 267 RAKGCHPTVVTYNTMIDGLCKC-GRIENALTLYDDMVREPHLKPDMFTYSALINGLNLSN 325

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK-GENCFPTLK 290
             E+A + + EM++    +P+ V+ Y T L  L +    D+A++  R M  G  C P + 
Sbjct: 326 RGEKAYELYEEMLDT-GCSPD-VVTYNTLLDGLCKSGCEDKAMEIFRKMGVGNVCDPNVI 383

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
            ++  +D   K++    AV+L   M G   +L+P+ + +  VI  LC    +D     F+
Sbjct: 384 TYTVLIDRFCKVDRLGDAVKLAKEMEG--RSLLPDAVTFTTVIQKLCKESRIDEAHELFE 441

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
             +     PDS+ +N +     K  R+ + +K    M+ +   PT       +T      
Sbjct: 442 S-IGKTCKPDSVLFNTMLAGYCKITRIDDAKKLHDRMLDSGCAPTLATYTALVTGFCRTG 500

Query: 411 EPEIAIEIWNYILENGILP 429
               A+ +++ ++E G  P
Sbjct: 501 RYSDALIMYHEMIEMGFPP 519


>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
 gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
          Length = 738

 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/400 (22%), Positives = 175/400 (43%), Gaps = 12/400 (3%)

Query: 55  IICEILAHASSDDIES---ALACTGIIPTPDLVHEVLQL---SYDSPSSAVDFFRWAGRG 108
           ++C + AH  + D       +  T + P     ++VL       D   + +   +   RG
Sbjct: 160 VVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRG 219

Query: 109 QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVM 168
             ++ + +N+ +  L + GR  +    V  M+   V  + T+ ++    C      EA+ 
Sbjct: 220 MSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMH 279

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL-NRVKKIVDPDGDSFAILLEGW 227
               M   G   D    N+++   C+  +    A E L + V K   PD  ++  L+ G 
Sbjct: 280 YLRRMMNQGCLPDDFTYNTIIDGYCKI-SMVQEATELLKDAVFKGFVPDQVTYCSLINGL 338

Query: 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
             EG+VE A + F E   +    P+ ++ Y + +  L     +  AL+ +  M  E C P
Sbjct: 339 CAEGDVERALELFNEAQAK-GIKPD-IVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHP 396

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFR 347
            ++ ++  ++ L K+ + + A  + +  +  G+  +P++  +N +I   C    +D+  +
Sbjct: 397 DIQTYNIVINGLCKMGNISDATVVMNDAIMKGY--LPDVFTFNTLIDGYCKRLKLDSALQ 454

Query: 348 FFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 407
             ++M  +G  PD++TYN +   L K  +V+EV + F EMI     P P+     I    
Sbjct: 455 LVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFC 514

Query: 408 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
            +++ E A ++   + + G+ P   S N L+ G    G L
Sbjct: 515 RSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDL 554



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 147/351 (41%), Gaps = 15/351 (4%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSFDV 172
           +N ++  L K    ++  + +R M   G   LP   T+ +I D YC      EA      
Sbjct: 261 YNTLIRGLCKKSMPQEAMHYLRRMMNQG--CLPDDFTYNTIIDGYCKISMVQEATELLKD 318

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEG 231
               G   D V   SL++ +C  E    RALE  N  + K + PD   +  L++G   +G
Sbjct: 319 AVFKGFVPDQVTYCSLINGLC-AEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQG 377

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR--VMKGENCFPTL 289
            +  A +   EM E  E     +  Y   +  L +   + +A   +   +MKG    P +
Sbjct: 378 LILHALQVMNEMAE--EGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGY--LPDV 433

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
             F+  +D   K      A+QL + M   G  + P+ I YN+V+  LC    V+ V   F
Sbjct: 434 FTFNTLIDGYCKRLKLDSALQLVERMWEYG--IAPDTITYNSVLNGLCKAGKVNEVNETF 491

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 409
            +M+  G  P+ +TYN++ E   ++ ++ E  K   +M +    P  ++  T I      
Sbjct: 492 QEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRN 551

Query: 410 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
            + E A  ++  + E G      + N L+        +    +  +EML++
Sbjct: 552 GDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSK 602



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 141/336 (41%), Gaps = 10/336 (2%)

Query: 98  AVDFFRWA-GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFD 155
           A++ F  A  +G +     +N +V  L   G        +  M E+G    + T+  + +
Sbjct: 347 ALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVIN 406

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVD 214
             C  G   +A +  +   M G   DV   N+L+   C++    S AL+ + R+ +  + 
Sbjct: 407 GLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDS-ALQLVERMWEYGIA 465

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEA 273
           PD  ++  +L G  K G V E N+TF EM+ +    NP   + Y   +    R  +++EA
Sbjct: 466 PDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNP---ITYNILIENFCRSNKMEEA 522

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
            K +  M  E   P    F+  +    +  D   A  L+  +   G++   +   +N +I
Sbjct: 523 SKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATAD--TFNTLI 580

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
           G      ++    + FD+M+  G   DS TY ++ +   K   V        EMIK  + 
Sbjct: 581 GAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFI 640

Query: 394 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
           P+       I  L        A+ I + +++ G++P
Sbjct: 641 PSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVP 676



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 39/337 (11%)

Query: 158 CGA---GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD 214
           CG    G   +A   FD M    V  ++ A N +L A+C++ +     L     +++ + 
Sbjct: 162 CGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMS 221

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
            +  ++ I + G  + G + EA +    M  R    P+ V+ Y T +  L +     EA+
Sbjct: 222 INLFTYNIWIRGLCEAGRLPEAVRLVDGM--RAYAVPD-VVTYNTLIRGLCKKSMPQEAM 278

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF-------------- 320
            +LR M  + C P    ++  +D   K++    A +L    V  GF              
Sbjct: 279 HYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGL 338

Query: 321 -------------------NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS 361
                               + P++++YN+++  LC    + +  +  ++M   G  PD 
Sbjct: 339 CAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDI 398

Query: 362 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 421
            TYN++   L K   + +     ++ I   + P      T I       + + A+++   
Sbjct: 399 QTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVER 458

Query: 422 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
           + E GI P   + N +L GL   G++++V    +EM+
Sbjct: 459 MWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMI 495



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 78/363 (21%), Positives = 129/363 (35%), Gaps = 42/363 (11%)

Query: 148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN 207
           P + +   +Y  AG+  +AV +F+ M +        A N+++ A+            ++ 
Sbjct: 54  PLYVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVR 113

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            +   V PD  +  I L  +        A +    +  R        +AY T +  L   
Sbjct: 114 MLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHR------GAVAYCTVVCGLYAH 167

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD--IMVGIGFNL--- 322
               +A +    M   + FP L  F+  L  L K  D   A  L    I  G+  NL   
Sbjct: 168 GHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTY 227

Query: 323 ---------------------------MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
                                      +P+++ YN +I  LC          +  +M+  
Sbjct: 228 NIWIRGLCEAGRLPEAVRLVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQ 287

Query: 356 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 415
           G  PD  TYN I +   K   V E  +   + +   + P  +   + I  L    + E A
Sbjct: 288 GCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERA 347

Query: 416 IEIWNYILENGILPLEASANELLVGLRNLG----RLSDVRRFAEEMLNRRILIYEVTMHK 471
           +E++N     GI P     N L+ GL   G     L  +   AEE  +  I  Y + ++ 
Sbjct: 348 LELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVING 407

Query: 472 LKK 474
           L K
Sbjct: 408 LCK 410


>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
 gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
          Length = 797

 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 164/383 (42%), Gaps = 21/383 (5%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGK-------NGRFEQMWNAVRVMKEDGVLSLPTFASI 153
           F     RG + +   +  ++D L K        G F+QM +  + +K D      T+  +
Sbjct: 226 FLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMID--KGVKPDN----DTYNCL 279

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV 213
              Y   GK+ E V   + MS HG++ D     SLL+ +C           F + ++K +
Sbjct: 280 IHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFFFDSMIRKGI 339

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
            P+   + IL+ G+  +G + E +     MVE    +P+H + +        +   +DEA
Sbjct: 340 KPNVAIYGILIHGYATKGALSEMHDLLNLMVEN-GLSPDHHI-FNIIFTAYAKKAMIDEA 397

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
           +     MK +   P +  F   +D L KL     AV  ++ M+  G  + PN+ ++N+++
Sbjct: 398 MHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQMMNEG--VAPNIFVFNSLV 455

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
             LC  D  +    F+ +M+  G  PD + +N I   L    +V + ++    M +   +
Sbjct: 456 YGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTR 515

Query: 394 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 453
           P  ++  T I         + A +  + +L  G+ P E + N LL G    GR+ D    
Sbjct: 516 PDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGV 575

Query: 454 AEEMLNRRI----LIYEVTMHKL 472
             EML   I    + Y   +H L
Sbjct: 576 FREMLRNGITPGVVTYSTILHGL 598



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 87/389 (22%), Positives = 156/389 (40%), Gaps = 46/389 (11%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAV-MSFDV 172
            +++++    + GR E  +    ++ + G  ++      +    C A +  EA+ +    
Sbjct: 96  TYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLREAMDILIKR 155

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK----KIVDPDGDSFAILLEGWE 228
           M   G   DVV+ N+LL   C  E +   ALE L+ +     +   P+  S+A ++ G+ 
Sbjct: 156 MPELGCTPDVVSYNTLLKGFC-NEKRAEEALELLHMMADSQGRSCPPNVVSYATVINGFF 214

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
            EG V++A   F EM++R    P +V+ Y T +  L + + VD A    + M  +   P 
Sbjct: 215 TEGQVDKAYNLFLEMMDR-GIQP-NVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPD 272

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
              ++  +   + +      V++ + M   G  L P+   Y +++  LCNN        F
Sbjct: 273 NDTYNCLIHGYLSIGKWKEVVRMLEEMSAHG--LKPDCYTYGSLLNYLCNNGRCREARFF 330

Query: 349 FDQM-----------------------------------VFHGAFPDSLTYNMIFECLIK 373
           FD M                                   V +G  PD   +N+IF    K
Sbjct: 331 FDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAK 390

Query: 374 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 433
              + E    F++M +    P  +N    I  L      + A+  +N ++  G+ P    
Sbjct: 391 KAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFV 450

Query: 434 ANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
            N L+ GL  + +    + F  EMLN+ I
Sbjct: 451 FNSLVYGLCTVDKWEKAKEFYFEMLNQGI 479



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 142/328 (43%), Gaps = 18/328 (5%)

Query: 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE------FLNRVKK- 211
           G+   D+A+  FD +  H     ++A N LL+A+ R   + S   E        NR+ + 
Sbjct: 26  GSLGLDDALKLFDGLLTHARPASIIAFNHLLTAVSRVSGRRSSTTESELVVSLFNRMIRE 85

Query: 212 ---IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
               V PD  +++IL+  + + G +E    TFG ++ +  W   +++  +  L  L   K
Sbjct: 86  CTIKVTPDLCTYSILIGCFCRMGRLEHGFATFG-LILKSGWRVNNIVINQ-LLKGLCDAK 143

Query: 269 QVDEALKFL-RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV-GIGFNLMPNL 326
           ++ EA+  L + M    C P +  ++  L        +  A++L  +M    G +  PN+
Sbjct: 144 RLREAMDILIKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNV 203

Query: 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 386
           + Y  VI        VD  +  F +M+  G  P+ +TY  + + L K + V   E  F +
Sbjct: 204 VSYATVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQ 263

Query: 387 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 446
           MI    +P        I   L   + +  + +   +  +G+ P   +   LL  L N GR
Sbjct: 264 MIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGR 323

Query: 447 LSDVRRFAEEMLNRRI----LIYEVTMH 470
             + R F + M+ + I     IY + +H
Sbjct: 324 CREARFFFDSMIRKGIKPNVAIYGILIH 351



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 116/285 (40%), Gaps = 4/285 (1%)

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206
           L T++ +   +C  G+ +    +F ++   G   + + +N LL  +C  +         +
Sbjct: 94  LCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLREAMDILI 153

Query: 207 NRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE-RFEWNPEHVLAYETFLITL 264
            R+ ++   PD  S+  LL+G+  E   EEA +    M + +    P +V++Y T +   
Sbjct: 154 KRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYATVINGF 213

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
               QVD+A      M      P +  ++  +D L K      A  ++  M+  G  + P
Sbjct: 214 FTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKG--VKP 271

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           +   YN +I    +      V R  ++M  HG  PD  TY  +   L  N R  E   FF
Sbjct: 272 DNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFFF 331

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
             MI+   +P        I             ++ N ++ENG+ P
Sbjct: 332 DSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSP 376



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/324 (21%), Positives = 137/324 (42%), Gaps = 7/324 (2%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           +  G +   Y +  +++ L  NGR  +       M   G+  ++  +  +   Y   G  
Sbjct: 300 SAHGLKPDCYTYGSLLNYLCNNGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGAL 359

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAI 222
            E     ++M  +G+  D    N + +A  ++      A+   N++K+  + PD  +F  
Sbjct: 360 SEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKA-MIDEAMHIFNKMKQQGLSPDVVNFGA 418

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L++   K G V++A   F +M+   E    ++  + + +  L    + ++A +F   M  
Sbjct: 419 LIDALCKLGRVDDAVLKFNQMMN--EGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLN 476

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
           +   P + FF+  L  L        A +L D+M  +G    P++I Y  +IG  C    +
Sbjct: 477 QGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTR--PDVISYTTLIGGHCLVGRI 534

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
           D   +  D M+  G  PD  TYN +     +  R+ +    F EM++N   P  +  +T 
Sbjct: 535 DEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTI 594

Query: 403 ITMLLDADEPEIAIEIWNYILENG 426
           +  L        A E++  ++ +G
Sbjct: 595 LHGLFTTRRFSEAKELYLNMITSG 618



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 90/375 (24%), Positives = 145/375 (38%), Gaps = 47/375 (12%)

Query: 107 RGQRLSPYAWNL--MVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           + Q LSP   N   ++D L K GR +        M  +GV  ++  F S+    C   K+
Sbjct: 405 KQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKW 464

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICR--QENQTSRALEFLNRVKKIVDPDGDSFA 221
           ++A   +  M   G+  DVV  N++L  +C   Q  +  R ++ + RV     PD  S+ 
Sbjct: 465 EKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVG--TRPDVISYT 522

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L+ G    G ++EA K+   M+      P+    Y T L    R  ++D+A    R M 
Sbjct: 523 TLIGGHCLVGRIDEAAKSLDVMLS-VGLKPDE-WTYNTLLHGYCRAGRIDDAYGVFREML 580

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
                P +  +S  L  L      + A +L+  M+  G     N+ +YN ++  L  N+ 
Sbjct: 581 RNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQW--NIWIYNIILNGLSKNNC 638

Query: 342 VDNVFRFFDQMVF-----------------------------------HGAFPDSLTYNM 366
           VD  F+ F  +                                     +G  PD  TY +
Sbjct: 639 VDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCL 698

Query: 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 426
           I E LI+   + E +  F  M K+   P        +  LL   +   A    + + E  
Sbjct: 699 IAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLNALVRRLLHRGDITRAGAYLSKLDEKN 758

Query: 427 ILPLEASANELLVGL 441
              LEAS   +L+ L
Sbjct: 759 -FSLEASTTAMLISL 772


>gi|224144668|ref|XP_002325369.1| predicted protein [Populus trichocarpa]
 gi|222862244|gb|EEE99750.1| predicted protein [Populus trichocarpa]
          Length = 422

 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/385 (23%), Positives = 170/385 (44%), Gaps = 17/385 (4%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM 139
           T +LV  VL+   +SPS ++ FF WA      +   +  ++  L +N ++  MW  +  +
Sbjct: 39  TSELVFRVLRACSNSPSESLRFFNWARSYYSPTTIEYEELIITLVRNKKYASMWKLIAQV 98

Query: 140 KED----GVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH-GVEQDVVAVNSLLSAICR 194
           K++      +S  T  SI + Y   G  D+AV  F+  S     + +V   NSLL A+C 
Sbjct: 99  KDNLGDKFSVSSDTVCSIIEEYGKHGLIDQAVEVFNKCSRSLNCQHNVCVYNSLLFALC- 157

Query: 195 QENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH 253
           +      A   + R ++K + PD  ++ +L+ GW   G + EA K F E + +  +NP  
Sbjct: 158 EVKMFHGAYALVRRMIRKGIVPDKRTYGVLVNGWCSSGKLREA-KGFLEEMSKKGFNPP- 215

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
           V   +  +  L+    ++ A   +R M  E   P +  F++ ++ +    +    V ++ 
Sbjct: 216 VRGRDLLIEGLLNAGYLESAKDMVRRMMKEGLVPDVNTFNSMVEAICNAGEVDFCVDMYH 275

Query: 314 IMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 373
            +  +GF   P++  Y  +I  +     +D  FR    ++  G  P    Y  I + + +
Sbjct: 276 SVCKLGF--CPDINSYKILIPAVSKVGRIDEAFRLLHNLIEDGHKPFPSLYAPIIKGMFR 333

Query: 374 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN---GILPL 430
             +  +   FF EM   + +  P N      M+         +E  NY++E    G++P+
Sbjct: 334 RGQFDDAFCFFSEM---KVKGHPPNRPVYTMMITMCGRGGKHVEAANYLVEMTEIGLVPI 390

Query: 431 EASANELLVGLRNLGRLSDVRRFAE 455
               + +  GL+N G+    +R  +
Sbjct: 391 SRCFDMVTDGLKNCGKHDLAKRIEQ 415


>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 586

 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 147/325 (45%), Gaps = 8/325 (2%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F  +  S     +Y       + M   G+  DV  +N L+++ C   N+   A   L ++
Sbjct: 72  FNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSFCHL-NRLGFAFSVLAKI 130

Query: 210 KKIV-DPDGDSFAILLEGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLITLIRG 267
            K+   PD  +F  L+ G   EG + +A   F +M+ E F+ N   V+ Y T +  L + 
Sbjct: 131 LKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPN---VVTYGTLINGLCKV 187

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
              + A++ LR M+  NC P +  +++ +D L K    T A  L+  MVG G +  P++ 
Sbjct: 188 GNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGIS--PDIF 245

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            Y ++I  LCN  +  +V    +QM+     PD + ++ + + L K  ++ E       M
Sbjct: 246 TYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMM 305

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
           I    +P  +     +       E + A+++++ ++ NG  P   S N L+ G   + R+
Sbjct: 306 IIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRM 365

Query: 448 SDVRRFAEEMLNRRILIYEVTMHKL 472
                  EEM  + ++   VT + L
Sbjct: 366 DKATYLFEEMCQKELIPNTVTYNTL 390



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 138/294 (46%), Gaps = 6/294 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           ++ +VD L K G+  +  + V +M   GV  ++ T+ ++ D +C   + DEAV  FD M 
Sbjct: 282 FSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMV 341

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
            +G   +V++ N+L++  C+ +        F    +K + P+  ++  L+      G ++
Sbjct: 342 HNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHXCHV-GRLQ 400

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           +A   F EMV   +  P+ +  Y   L  L +   +DEA+  L+ ++G N  P ++ ++ 
Sbjct: 401 DAIALFHEMVAHGQI-PD-LATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTI 458

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
            +D + +  +   A  ++  +   G  L PN+  Y  +I  LC    +D   + F +M  
Sbjct: 459 VIDGMCRAGELEAARDIFSNLSSKG--LRPNVRTYTIMINGLCRRGLLDEANKLFMEMDG 516

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
           +G  PD  TYN I + L++NK      +   EM+   +          + ML D
Sbjct: 517 NGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEMLCD 570



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 140/335 (41%), Gaps = 9/335 (2%)

Query: 108 GQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
           GQ +SP  + +  ++  L     ++ +   +  M    ++  +  F+++ D+ C  GK  
Sbjct: 237 GQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKIT 296

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
           EA    D+M + GVE +VV  N+L+   C Q         F   V     P+  S+  L+
Sbjct: 297 EAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLI 356

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G+ K   +++A   F EM ++ E  P  V  Y T +     G+ + +A+     M    
Sbjct: 357 NGYCKIQRMDKATYLFEEMCQK-ELIPNTV-TYNTLMHXCHVGR-LQDAIALFHEMVAHG 413

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
             P L  +   LD L K +    A+ L   + G   N+ P++ +Y  VI  +C   +++ 
Sbjct: 414 QIPDLATYRILLDYLCKKSHLDEAMALLKTIEG--SNMDPDIQIYTIVIDGMCRAGELEA 471

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
               F  +   G  P+  TY ++   L +   + E  K F EM  N   P      T   
Sbjct: 472 ARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQ 531

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLV 439
            LL   E   AI++   +L  G    + S   LLV
Sbjct: 532 GLLQNKEALRAIQLLQEMLARG-FSADVSTTTLLV 565



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 81/360 (22%), Positives = 148/360 (41%), Gaps = 10/360 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F +  G G + +   +  +++ L K G        +R M++      +  + SI DS C 
Sbjct: 162 FDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCK 221

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGD 218
             +  EA   F  M   G+  D+    SL+ ++C    +       LN+ +   + PD  
Sbjct: 222 DRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNL-CEWKHVTTLLNQMINSKIMPDVV 280

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            F+ +++   KEG + EA+     M+ R  E N   V+ Y   +       ++DEA+K  
Sbjct: 281 IFSTVVDALCKEGKITEAHDVVDMMIIRGVEPN---VVTYNALMDGHCLQSEMDEAVKVF 337

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337
             M      P +  ++  ++   K+     A  L++ M      L+PN + YN ++   C
Sbjct: 338 DTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQK--ELIPNTVTYNTLMHX-C 394

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
           +   + +    F +MV HG  PD  TY ++ + L K   + E       +  +   P   
Sbjct: 395 HVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQ 454

Query: 398 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
                I  +  A E E A +I++ +   G+ P   +   ++ GL   G L +  +   EM
Sbjct: 455 IYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEM 514



 Score = 46.6 bits (109), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 46/249 (18%), Positives = 93/249 (37%), Gaps = 4/249 (1%)

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +++A  +F  M+      P   + +   L ++ + KQ          M      P +   
Sbjct: 50  LDDALSSFNRMLHMHP--PPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTL 107

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  ++    LN    A  +   ++ +G    P+   +  +I  LC    + +    FD+M
Sbjct: 108 NILINSFCHLNRLGFAFSVLAKILKLGHQ--PDTATFTTLIRGLCVEGKIGDALHLFDKM 165

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
           +  G  P+ +TY  +   L K    +   +    M +   QP  +   + I  L    + 
Sbjct: 166 IGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQV 225

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
             A  +++ ++  GI P   +   L+  L NL     V     +M+N +I+   V    +
Sbjct: 226 TEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTV 285

Query: 473 KKAFYNESR 481
             A   E +
Sbjct: 286 VDALCKEGK 294


>gi|218196467|gb|EEC78894.1| hypothetical protein OsI_19266 [Oryza sativa Indica Group]
 gi|222630938|gb|EEE63070.1| hypothetical protein OsJ_17878 [Oryza sativa Japonica Group]
          Length = 939

 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 101/408 (24%), Positives = 186/408 (45%), Gaps = 26/408 (6%)

Query: 96  SSAVDFFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASI 153
           SSA++ F   G+ G R S  + N +++ L ++G           M+  GVL    T A +
Sbjct: 165 SSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFTVAIM 224

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ--ENQTSRALEFLNRVKK 211
             +YC  G+  +AV   + M   G+E ++VA ++++   C         R LE L R  K
Sbjct: 225 AKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQR--K 282

Query: 212 IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD 271
            + P+  ++ +L++G+ K+G +EEA +   EM E  +   + V AY   +    +  ++D
Sbjct: 283 GLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEV-AYGMMINGYCQRGRMD 341

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA 331
           +A +    M+       L  ++  ++ L KL       ++   M  +G  + P+   YN 
Sbjct: 342 DATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVG--MRPDKYSYNT 399

Query: 332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
           +I   C    +   F     MV +G    +LTYN + +       + +  + +  M+K  
Sbjct: 400 LIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRG 459

Query: 392 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 451
             P  ++C+T +  L  A + E A+ +W   L  G+     + N ++ GL  +GR+++  
Sbjct: 460 VAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAE-- 517

Query: 452 RFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQM 499
             AEE+L+R        M +L+     +S + R +FD     CK  Q+
Sbjct: 518 --AEELLDR--------MKELRCP--PDSLTYRTLFDGY---CKLGQL 550



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 87/420 (20%), Positives = 166/420 (39%), Gaps = 68/420 (16%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP----TFASIFDSYCGAGK 162
           RG   +   +N +++ L K GR  +    +  MKE   L  P    T+ ++FD YC  G+
Sbjct: 493 RGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKE---LRCPPDSLTYRTLFDGYCKLGQ 549

Query: 163 YDEAV--------MSF------------------------DV---MSMHGVEQDVVAVNS 187
              A         + F                        D+   MS  G+  ++V   +
Sbjct: 550 LGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGA 609

Query: 188 LLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER- 246
           L++  C++ N       +   V   ++P+    + L+  + KEG V+EAN    ++V   
Sbjct: 610 LIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNID 669

Query: 247 ----------------------FEWNPEHV-LAYETFLITLIRGKQVDEALKFLRVMKGE 283
                                  + NP    + +   +  L +  ++ +A      ++ +
Sbjct: 670 MIPGCSISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNK 729

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
              P    +S+ +           A  L D+M+  G  L PN+I YN++I  LC +  + 
Sbjct: 730 RFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAG--LTPNIITYNSLIYGLCKSGKLS 787

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
                F+++   G  P+ +TYN + +   K  +  E  K   +M++   QPT +  +  I
Sbjct: 788 RAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQPTVITYSILI 847

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
             L      E AI++ + ++EN + P   +   L+ G    G + ++ +  +EM  R +L
Sbjct: 848 YGLCTQGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEEISKLYDEMHIRGLL 907



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 87/419 (20%), Positives = 164/419 (39%), Gaps = 23/419 (5%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRF---------- 129
           TP L+   L+     P +A+  FR A     L  +A   ++ +L +  RF          
Sbjct: 69  TPALLQAALRRVRLDPDAALHLFRLAPSRPSLVSHAQ--LLHILARARRFHDARALLSSL 126

Query: 130 ----EQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAV 185
               E ++  +  +  D   S  +F  +  ++  AG+   A+  FD M   G    + + 
Sbjct: 127 PPHAEPLFPHLAEVYRDFTFSAVSFDLLLRAHADAGQLSSALNVFDGMGKVGCRPSLRSC 186

Query: 186 NSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245
           N LL+ + +  +    A+ +       V PD  + AI+ + + ++G V +A     E VE
Sbjct: 187 NRLLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFTVAIMAKAYCRDGRVAQAV----EFVE 242

Query: 246 RFEWNPEHV--LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303
             E     V  +AY   +         ++A + L  ++ +   P +  ++  +    K  
Sbjct: 243 EMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDG 302

Query: 304 DSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLT 363
               A ++   M   G +++ + + Y  +I   C    +D+  R  ++M   G   +   
Sbjct: 303 RMEEAERVVKEMKETG-DIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFV 361

Query: 364 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 423
           YN +   L K  R+ EV+K   EM     +P   +  T I           A E+   ++
Sbjct: 362 YNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMV 421

Query: 424 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 482
            NG+     + N LL G  +L  + D  R    ML R +   E++   L    +   ++
Sbjct: 422 RNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKT 480



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 80/438 (18%), Positives = 168/438 (38%), Gaps = 68/438 (15%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCG------- 159
           G R   Y++N ++D   + G   + +   R+M  +G+ +   T+ ++   +C        
Sbjct: 389 GMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDA 448

Query: 160 ----------------------------AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
                                       AGK ++A+  +      G+ ++V+  N++++ 
Sbjct: 449 LRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVING 508

Query: 192 ICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
           +C+   + + A E L+R+K++   PD  ++  L +G+ K G +  A     +M E   + 
Sbjct: 509 LCKI-GRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKM-EHLGFA 566

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P  V  + +F+      KQ  +       M      P L  +   +    K  +   A  
Sbjct: 567 PS-VEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACN 625

Query: 311 LWDIMVGIGFNLMPNLIMYNA----------------VIGLLCNND----------DVDN 344
           L+  MV  G N  PN+ + +A                V+  L N D          ++D 
Sbjct: 626 LYFEMVNNGMN--PNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSISTIEIDK 683

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
           +    D +        ++ +N+I   L K+ R+ + +  F  +    + P     ++ I 
Sbjct: 684 ISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIH 743

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 464
               +   + A  + + +L  G+ P   + N L+ GL   G+LS       ++ ++ I  
Sbjct: 744 GCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISP 803

Query: 465 YEVTMHKLKKAFYNESRS 482
             +T + L   +  E ++
Sbjct: 804 NGITYNTLIDEYCKEGKT 821


>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 925

 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 93/400 (23%), Positives = 177/400 (44%), Gaps = 18/400 (4%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F R +  G   +   +N +++VL +N   +       +M + G L +  ++  +   YC 
Sbjct: 388 FHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCT 447

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGD 218
            G  ++A+     M        +V  N ++   C     T  A+  L  +K     PD  
Sbjct: 448 IGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYC-DSGDTDVAIRVLELMKANGCQPDEW 506

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           S+  L+ G+ K   +E A+  F EM++R    P  V  Y   +    + +++D A + L 
Sbjct: 507 SYTELISGFCKISKMELASGMFNEMMDR-GLCPNEV-TYTALISGYCKDEKLDCAARMLE 564

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            MK   C P ++ ++  +  L K N+ + A +L  +M  +   + P+++ Y+ VI  LCN
Sbjct: 565 RMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVM--LEEKISPDVVTYSTVINGLCN 622

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
           N  +      F++MV HG  P+  TY+ + + L +  RV E E+ F E+ K    P  + 
Sbjct: 623 NGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDEVT 682

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN---------LGRLSD 449
               I + + + + + A +    ++  G  P   + + L+ GL+N         L   + 
Sbjct: 683 YVKMIEVCVMSGKVDRAFDFLGEMINAGCQPTLQTYDVLIKGLQNEMVYHKLVALPNAAS 742

Query: 450 VRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDS 489
              F ++++N+ ++   V   KL +  +  SR + D   S
Sbjct: 743 TSTFDDQIINKDVI--SVLSSKLAELDFELSRQLYDALLS 780



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 88/378 (23%), Positives = 161/378 (42%), Gaps = 11/378 (2%)

Query: 98  AVDFFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFD 155
           A+DF     R G   + + +   +  L   GR E  W     MK+ G   ++ T+ S+  
Sbjct: 317 ALDFISEMTRHGVLPTVHTFTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLIS 376

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDP 215
              G      A+  F  MS  GV  + V  N+L++ +       S  + F    K    P
Sbjct: 377 ---GQRVSRMAIGLFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLP 433

Query: 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL-AYETFLITLIRGKQVDEAL 274
           +  S+  L+ G+   G+ E+A      M++     P   L  Y   +         D A+
Sbjct: 434 NTSSYNELIRGYCTIGDTEKAMSMLTNMLK---GRPTPTLVTYNIIIKGYCDSGDTDVAI 490

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
           + L +MK   C P    ++  +    K++    A  +++ M+  G  L PN + Y A+I 
Sbjct: 491 RVLELMKANGCQPDEWSYTELISGFCKISKMELASGMFNEMMDRG--LCPNEVTYTALIS 548

Query: 335 LLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
             C ++ +D   R  ++M   G  P+  TYN++   L K       E+    M++ +  P
Sbjct: 549 GYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISP 608

Query: 395 TPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 454
             +  +T I  L +     +A+E++N ++++G LP   + + L+  L   GR+ +     
Sbjct: 609 DVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMF 668

Query: 455 EEMLNRRILIYEVTMHKL 472
            E+  + ++  EVT  K+
Sbjct: 669 SELKKQGLIPDEVTYVKM 686



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/339 (22%), Positives = 140/339 (41%), Gaps = 40/339 (11%)

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEE 235
           G++ +++  NS+++A+C+  N    A   +N+V K  + PD  ++  ++ G+ +  +++ 
Sbjct: 223 GLQPNLLIYNSVINALCKDGN-VRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDS 281

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
           A + F  M E  E    +   Y T +  L    +V+EAL F+  M      PT+  F+  
Sbjct: 282 AFEIFNRMDE--EGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAP 339

Query: 296 LDILVKLNDSTHAVQLWDIMV--------------------------GIGF-------NL 322
              +V L D       W I +                           IG         +
Sbjct: 340 ---IVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLISGQRVSRMAIGLFHRMSRDGV 396

Query: 323 MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
           +PN + YNA++ +L  N ++D+    F+ M  HG  P++ +YN +           +   
Sbjct: 397 VPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMS 456

Query: 383 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 442
               M+K    PT +     I    D+ + ++AI +   +  NG  P E S  EL+ G  
Sbjct: 457 MLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFC 516

Query: 443 NLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
            + ++        EM++R +   EVT   L   +  + +
Sbjct: 517 KISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEK 555



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/356 (19%), Positives = 136/356 (38%), Gaps = 8/356 (2%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEA 166
           G +   + +  M+    +N   +  +     M E+G   +  T++++ +  C +G+ +EA
Sbjct: 258 GMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEA 317

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
           +     M+ HGV   V    + + A+C           F++  KK   P+  ++  L+ G
Sbjct: 318 LDFISEMTRHGVLPTVHTFTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLISG 377

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
                 V          + R    P  V  Y   +  L+   ++D AL    +M    C 
Sbjct: 378 QR----VSRMAIGLFHRMSRDGVVPNTV-TYNALMNVLMENMEIDSALIVFNMMGKHGCL 432

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346
           P    ++  +     + D+  A+ +   M  +     P L+ YN +I   C++ D D   
Sbjct: 433 PNTSSYNELIRGYCTIGDTEKAMSMLTNM--LKGRPTPTLVTYNIIIKGYCDSGDTDVAI 490

Query: 347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406
           R  + M  +G  PD  +Y  +     K  ++      F+EM+     P  +     I+  
Sbjct: 491 RVLELMKANGCQPDEWSYTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGY 550

Query: 407 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
              ++ + A  +   +  +G  P   + N L+ GL      S      + ML  +I
Sbjct: 551 CKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKI 606



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 87/182 (47%), Gaps = 2/182 (1%)

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           ++ +AL +L +         L  ++  L  L KLN ++  +  +  ++  G  L PNL++
Sbjct: 173 EMTQALNYLDMFSQRGPKMGLFTYTTLLIQLNKLNMTSTVMDRYHQILREG--LQPNLLI 230

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           YN+VI  LC + +V +     +++   G  PD+ TY  +     +N+ +    + F+ M 
Sbjct: 231 YNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMD 290

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
           +   +P     +T I  L ++     A++  + +  +G+LP   +    +V L ++GR+ 
Sbjct: 291 EEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAPIVALCDMGRIE 350

Query: 449 DV 450
           D 
Sbjct: 351 DA 352



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 81/189 (42%), Gaps = 2/189 (1%)

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
           +  Y T LI L +       +     +  E   P L  +++ ++ L K  +   A  + +
Sbjct: 193 LFTYTTLLIQLNKLNMTSTVMDRYHQILREGLQPNLLIYNSVINALCKDGNVRDAESIIN 252

Query: 314 IMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 373
            +   G  + P+   Y ++I   C N D+D+ F  F++M   G  P++ TY+ +   L  
Sbjct: 253 KVFKSG--MKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLINGLCN 310

Query: 374 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 433
           + RV+E   F  EM ++   PT       I  L D    E A +I+  + + G  P   +
Sbjct: 311 SGRVNEALDFISEMTRHGVLPTVHTFTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNVYT 370

Query: 434 ANELLVGLR 442
              L+ G R
Sbjct: 371 YTSLISGQR 379



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 2/158 (1%)

Query: 306 THAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYN 365
           T A+   D+    G  +   L  Y  ++  L   +    V   + Q++  G  P+ L YN
Sbjct: 175 TQALNYLDMFSQRGPKM--GLFTYTTLLIQLNKLNMTSTVMDRYHQILREGLQPNLLIYN 232

Query: 366 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 425
            +   L K+  V + E   +++ K+  +P      + I       + + A EI+N + E 
Sbjct: 233 SVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEE 292

Query: 426 GILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
           G  P  A+ + L+ GL N GR+++   F  EM    +L
Sbjct: 293 GCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVL 330


>gi|50878351|gb|AAT85126.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 920

 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 101/408 (24%), Positives = 186/408 (45%), Gaps = 26/408 (6%)

Query: 96  SSAVDFFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASI 153
           SSA++ F   G+ G R S  + N +++ L ++G           M+  GVL    T A +
Sbjct: 165 SSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFTVAIM 224

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ--ENQTSRALEFLNRVKK 211
             +YC  G+  +AV   + M   G+E ++VA ++++   C         R LE L R  K
Sbjct: 225 AKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQR--K 282

Query: 212 IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD 271
            + P+  ++ +L++G+ K+G +EEA +   EM E  +   + V AY   +    +  ++D
Sbjct: 283 GLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEV-AYGMMINGYCQRGRMD 341

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA 331
           +A +    M+       L  ++  ++ L KL       ++   M  +G  + P+   YN 
Sbjct: 342 DATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVG--MRPDKYSYNT 399

Query: 332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
           +I   C    +   F     MV +G    +LTYN + +       + +  + +  M+K  
Sbjct: 400 LIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRG 459

Query: 392 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 451
             P  ++C+T +  L  A + E A+ +W   L  G+     + N ++ GL  +GR+++  
Sbjct: 460 VAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAE-- 517

Query: 452 RFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQM 499
             AEE+L+R        M +L+     +S + R +FD     CK  Q+
Sbjct: 518 --AEELLDR--------MKELRCP--PDSLTYRTLFDGY---CKLGQL 550



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 87/419 (20%), Positives = 164/419 (39%), Gaps = 23/419 (5%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRF---------- 129
           TP L+   L+     P +A+  FR A     L  +A   ++ +L +  RF          
Sbjct: 69  TPALLQAALRRVRLDPDAALHLFRLAPSRPSLVSHAQ--LLHILARARRFHDARALLSSL 126

Query: 130 ----EQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAV 185
               E ++  +  +  D   S  +F  +  ++  AG+   A+  FD M   G    + + 
Sbjct: 127 PPHAEPLFPHLAEVYRDFTFSAVSFDLLLRAHADAGQLSSALNVFDGMGKVGCRPSLRSC 186

Query: 186 NSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245
           N LL+ + +  +    A+ +       V PD  + AI+ + + ++G V +A     E VE
Sbjct: 187 NRLLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFTVAIMAKAYCRDGRVAQAV----EFVE 242

Query: 246 RFEWNPEHV--LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303
             E     V  +AY   +         ++A + L  ++ +   P +  ++  +    K  
Sbjct: 243 EMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDG 302

Query: 304 DSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLT 363
               A ++   M   G +++ + + Y  +I   C    +D+  R  ++M   G   +   
Sbjct: 303 RMEEAERVVKEMKETG-DIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFV 361

Query: 364 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 423
           YN +   L K  R+ EV+K   EM     +P   +  T I           A E+   ++
Sbjct: 362 YNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMV 421

Query: 424 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 482
            NG+     + N LL G  +L  + D  R    ML R +   E++   L    +   ++
Sbjct: 422 RNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKT 480



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 85/406 (20%), Positives = 166/406 (40%), Gaps = 59/406 (14%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP----TFASIFDSYCGAGK 162
           RG   +   +N +++ L K GR  +    +  MKE   L  P    T+ ++FD YC  G+
Sbjct: 493 RGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKE---LRCPPDSLTYRTLFDGYCKLGQ 549

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSA--ICRQENQTSRALEFLNRVKKIVDPDGDSF 220
              A    + M   G    V   NS ++   I +Q ++ +     ++   + + P+  ++
Sbjct: 550 LGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMS--ARGLSPNLVTY 607

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
             L+ GW KEGN+ EA   + EMV     NP +V      +    +  +VDEA   L+ +
Sbjct: 608 GALIAGWCKEGNLHEACNLYFEMVNN-GMNP-NVFICSALMSCFYKEGKVDEANLVLQKL 665

Query: 281 KGENCFPTLKFFSNALDILVKLNDST-----HAVQ-LWDIMVGIGFNL------------ 322
              +  P     +  +D +  + D+      H+   +W++++   F L            
Sbjct: 666 VNIDMIPGCSISTIEIDKISHVVDTIADGNPHSANVMWNVII---FGLCKSGRIADAKSL 722

Query: 323 ---------MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 373
                    +P+   Y+++I     +  +D  F   D M+  G  P+ +TYN +   L K
Sbjct: 723 FESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCK 782

Query: 374 NKRVHEVEKFFHEMIKNEWQPTPLNCATAI----------------TMLLDADEPEIAIE 417
           + ++      F+++      P  +   T I                  +++    E AI+
Sbjct: 783 SGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGYMEEAIK 842

Query: 418 IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
           + + ++EN + P   +   L+ G    G + ++ +  +EM  R +L
Sbjct: 843 LLDQMIENNVDPNYITYCTLIHGYIKSGNMEEISKLYDEMHIRGLL 888



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 80/438 (18%), Positives = 168/438 (38%), Gaps = 68/438 (15%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCG------- 159
           G R   Y++N ++D   + G   + +   R+M  +G+ +   T+ ++   +C        
Sbjct: 389 GMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDA 448

Query: 160 ----------------------------AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
                                       AGK ++A+  +      G+ ++V+  N++++ 
Sbjct: 449 LRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVING 508

Query: 192 ICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
           +C+   + + A E L+R+K++   PD  ++  L +G+ K G +  A     +M E   + 
Sbjct: 509 LCKI-GRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKM-EHLGFA 566

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P  V  + +F+      KQ  +       M      P L  +   +    K  +   A  
Sbjct: 567 PS-VEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACN 625

Query: 311 LWDIMVGIGFNLMPNLIMYNA----------------VIGLLCNND----------DVDN 344
           L+  MV  G N  PN+ + +A                V+  L N D          ++D 
Sbjct: 626 LYFEMVNNGMN--PNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSISTIEIDK 683

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
           +    D +        ++ +N+I   L K+ R+ + +  F  +    + P     ++ I 
Sbjct: 684 ISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIH 743

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 464
               +   + A  + + +L  G+ P   + N L+ GL   G+LS       ++ ++ I  
Sbjct: 744 GCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISP 803

Query: 465 YEVTMHKLKKAFYNESRS 482
             +T + L   +  E ++
Sbjct: 804 NGITYNTLIDEYCKEGKT 821



 Score = 41.6 bits (96), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 34/188 (18%), Positives = 78/188 (41%), Gaps = 16/188 (8%)

Query: 186 NSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245
           N ++  +C+          F +   K   PD  +++ L+ G    G+++EA  +  +++ 
Sbjct: 704 NVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEA-FSLRDVML 762

Query: 246 RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS 305
                P +++ Y + +  L +  ++  A+     ++ +   P    ++  +D   K   +
Sbjct: 763 SAGLTP-NIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKT 821

Query: 306 THAVQLWDIMVGIGF--------------NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           T A +L   MV  G+              N+ PN I Y  +I     + +++ + + +D+
Sbjct: 822 TEAFKLKQKMVEEGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEEISKLYDE 881

Query: 352 MVFHGAFP 359
           M   G  P
Sbjct: 882 MHIRGLLP 889


>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
          Length = 649

 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 108/441 (24%), Positives = 186/441 (42%), Gaps = 9/441 (2%)

Query: 63  ASSDDIESALACTGIIPTPDLVHEVLQLSYDS--PSSAVDFFRWAGRGQRLSPY-AWNLM 119
           AS  +I S+L  +   P P +   +++    S  P  A + FR     +   P  A N +
Sbjct: 69  ASRREIVSSLLASSPTPQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPVPASASNAL 128

Query: 120 VDVLGKNGRFEQMWNAVR-VMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGV 178
           + VL + G       A R V+  D  ++  T   +  SYC   ++D A      M    V
Sbjct: 129 LAVLSRAGWPHLAQEAYRLVLSSDSEVNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCV 188

Query: 179 EQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANK 238
             DVV  N L+ A  R  +  +      +   + + P   ++  +L+G  K    ++A +
Sbjct: 189 FPDVVTHNVLIDARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKE 248

Query: 239 TFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDI 298
            F  M ++    P+ V ++   +    R  +V EA+KF + M+     P +  FS  + +
Sbjct: 249 VFRTM-DQCSVAPD-VRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGL 306

Query: 299 LVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAF 358
             +  +  HA      M G+G  L+P+ ++Y  VIG  C    +    R  D+MV  G  
Sbjct: 307 FSRRGEMDHAGAYLREMKGLG--LVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCL 364

Query: 359 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 418
           PD +TYN +   L K  R+ + EK  +EM +    P      T I         E A+++
Sbjct: 365 PDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQL 424

Query: 419 WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 478
           ++ +L   + P   + N L+ G+   G L+      ++M  R IL   +T   L  + + 
Sbjct: 425 FDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDS-HC 483

Query: 479 ESRSMRDIFDSLERRCKTSQM 499
           E   + D F  L+   K   +
Sbjct: 484 EKGQVEDAFGFLDEMVKKGNL 504



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 86/405 (21%), Positives = 168/405 (41%), Gaps = 40/405 (9%)

Query: 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMS 169
           ++ Y  N+MV    K   F+     +  M++  V   + T   + D+   AG  D A+  
Sbjct: 155 VNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIAL 214

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK 229
            D M+  G++  +V  NS+L  +C+          F    +  V PD  SF IL+ G+ +
Sbjct: 215 VDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCR 274

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
            G V+EA K + EM  R+   P+ V+++   +    R  ++D A  +LR MKG    P  
Sbjct: 275 VGEVKEAVKFYKEMQHRY-VTPD-VVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDG 332

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN---------- 339
             ++  +    +    + A+++ D MVG  F  +P+++ YN ++  LC            
Sbjct: 333 VIYTMVIGGFCRAGSMSEALRVRDEMVG--FGCLPDVVTYNTLLNGLCKQHRLLDAEKLL 390

Query: 340 -------------------------DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN 374
                                     + +N  + FD ++     PD +TYN + + + + 
Sbjct: 391 NEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRK 450

Query: 375 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 434
             + +  + + +M   E  P  +  +  I    +  + E A    + +++ G LP   + 
Sbjct: 451 GDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTY 510

Query: 435 NELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 479
           N ++ G    G +   ++F ++M    +    +T + L   +  E
Sbjct: 511 NSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIHGYIKE 555



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 157/352 (44%), Gaps = 15/352 (4%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMK-----EDGVLSLPTFASIFDSYCGAGKYDEAVMS 169
           +++ ++ +  + G  +     +R MK      DGV+    +  +   +C AG   EA+  
Sbjct: 299 SFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVI----YTMVIGGFCRAGSMSEALRV 354

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWE 228
            D M   G   DVV  N+LL+ +C+Q ++   A + LN ++ + V PD  +F  L+ G+ 
Sbjct: 355 RDEMVGFGCLPDVVTYNTLLNGLCKQ-HRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYC 413

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           ++GN E A + F  ++ R    P+ V+ Y + +  + R   + +A +    M      P 
Sbjct: 414 RQGNFENALQLFDTLL-RQRLRPD-VVTYNSLIDGMCRKGDLAKANELWDDMHAREILPN 471

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
              +S  +D   +      A    D MV  G NL PN+  YN++I   C + +V    +F
Sbjct: 472 HITYSILIDSHCEKGQVEDAFGFLDEMVKKG-NL-PNIRTYNSIIKGYCRSGNVKKGQQF 529

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
             +M     FPD +T+N +    IK + +H     F+ M K   +P  +     I    +
Sbjct: 530 LQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGFSE 589

Query: 409 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
               + A  ++  + ++GI P   +   L+ G    G      +  +EM++R
Sbjct: 590 QGNMQDAGRVFKGMGDSGIEPDRYTYMSLINGHVTAGNSKQAFQLHDEMIHR 641


>gi|359491272|ref|XP_003634254.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Vitis vinifera]
          Length = 450

 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 155/353 (43%), Gaps = 49/353 (13%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLS--PYAWNLMVDVLGKNGRFEQMWNAVR 137
           TP+LV  VL+L ++    A+ FF+        +    +++  +D+ G+   ++ +W  V 
Sbjct: 66  TPNLVDRVLKLLWNHGPKALQFFKSLDYHPTYAHVSSSFDHAIDIAGRLRDYKTLWTLVD 125

Query: 138 VMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
            M+   +   P TFA I + Y  AGK D A+  F  M  HG  QD+ + N++L  +C+  
Sbjct: 126 RMRTRRLGPNPKTFAIITERYVSAGKPDRAIKIFFSMHEHGCVQDLNSFNTILDVLCK-- 183

Query: 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
              S+ +E  +   K+       F ILL+G+ + G                         
Sbjct: 184 ---SKRVEMAD--NKLFKVFRGRFRILLKGFFRAG------------------------- 213

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
                       Q+ EA +F   MK   C   +  ++  +       +   A ++++ M+
Sbjct: 214 ------------QLKEAWEFFLQMKKRKCEIDVVTYTTVVHGFGVAGEVRKAQRVFNEMI 261

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
           G G  ++P++  YNA I +LC  D+V+N    F++M+  G  P+S TYN++   L    R
Sbjct: 262 GEG--VLPSVATYNAFIQVLCKKDNVENAISVFEEMLRKGYMPNSTTYNVVIRGLCHVGR 319

Query: 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
           + +  +F   M  +E +P        I    DA+E E  + ++  + +   LP
Sbjct: 320 MEKAMEFMARMKDDECEPNVQIYNVVIRYFCDAEEIEKGLNVFEKMGDADCLP 372


>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 580

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 140/338 (41%), Gaps = 50/338 (14%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-----------SLPTFASIFDSYCGAGKY 163
            +N++VD L K GR ++       MK  G++            + TF  + D+ C  GK 
Sbjct: 217 TYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKV 276

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
            EA     VM   G+  D+V  NSL+   C   +  S    F++   K  +PD  S+ +L
Sbjct: 277 IEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVL 336

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           + G+ K   VEEA K + EM+        +V+ Y++ L  +    +VD+A K   VMK  
Sbjct: 337 INGYSKTLKVEEAMKLYNEML--LVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAH 394

Query: 284 -------------------NC-FPTLKFFSNA---------------LDILVKLNDSTHA 308
                              +C F  +K F+                 +D L K      A
Sbjct: 395 GIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETA 454

Query: 309 VQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIF 368
            +L++ +   G    PN++ Y  +I   C    VD       +M  +G  PD +TYN + 
Sbjct: 455 WELFEKLSNEGHE--PNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLM 512

Query: 369 ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406
               ++ ++ EV +  H M + +  P  + C+  + ML
Sbjct: 513 RGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDML 550



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 80/371 (21%), Positives = 153/371 (41%), Gaps = 35/371 (9%)

Query: 94  SPSSAVDFFRWAGRGQRL-SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFA 151
           + + A+ FF    R     S  ++N ++  L K   + Q+++    M+  G+ S   T  
Sbjct: 49  TATHALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLN 108

Query: 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK 211
            + +  C   +  E   +F  +   G   ++V  N+L+  +C  E++ S A     R++K
Sbjct: 109 ILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLC-MEHRISEATRLFLRMQK 167

Query: 212 I-VDPDGDSFAILLEGWEKEGNVEEANKTFGEM---VERFEWNPE-HVLAYETFLITLIR 266
           +   PD  ++  L++G    GN+  A K   EM   + R+E N + +V+ Y   +  L +
Sbjct: 168 LGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCK 227

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNL 326
             + DEA +    MK +   P                      ++ D        L P++
Sbjct: 228 VGREDEAKQLFEEMKTQGMIPN---------------------EMLDQ------GLQPDM 260

Query: 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 386
           + +N +I  LC    V    +    M+  G  PD +TYN + E       ++   + F  
Sbjct: 261 VTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVS 320

Query: 387 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 446
           M     +P  ++    I       + E A++++N +L  G  P   + + LL G+   G+
Sbjct: 321 MPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGK 380

Query: 447 LSDVRRFAEEM 457
           + D ++    M
Sbjct: 381 VDDAKKLFSVM 391



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 88/412 (21%), Positives = 174/412 (42%), Gaps = 25/412 (6%)

Query: 101 FFRWAG---RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDS 156
           F  +AG   RG   +   +N ++  L    R  +       M++ G    + T+ ++   
Sbjct: 124 FAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKG 183

Query: 157 YCGAGKYDEAV-----MSFDVMSMH-GVEQDVVAVNSLLSAICR--QENQTSRALEFLNR 208
            CG G  + A+     M  D+       + +V+  N ++  +C+  +E++  +  E +  
Sbjct: 184 LCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKT 243

Query: 209 VKKI--------VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF 260
              I        + PD  +F +L++   KEG V EA K  G M+E     P+ ++ Y + 
Sbjct: 244 QGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIES-GIVPD-LVTYNSL 301

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF 320
           +        ++ A +    M  + C P +  ++  ++   K      A++L++ M+ +G 
Sbjct: 302 IEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGK 361

Query: 321 NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEV 380
              PN+I Y++++  +     VD+  + F  M  HG   +S TY +  + L KN  + E 
Sbjct: 362 R--PNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEA 419

Query: 381 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 440
            K F E+  + ++    N    I  L  A + E A E++  +   G  P   +   ++ G
Sbjct: 420 MKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHG 479

Query: 441 LRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLER 492
               G++       ++M         +T + L + FY ES  + ++   L R
Sbjct: 480 FCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFY-ESNKLEEVVQLLHR 530



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 65/155 (41%), Gaps = 2/155 (1%)

Query: 305 STHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTY 364
           +THA+  + +M  +     P+L  +N ++  L        VF  ++QM   G   D  T 
Sbjct: 50  ATHALHFFHLM--MRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTL 107

Query: 365 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 424
           N++  CL    R+ E    F  +++  + P  +   T I  L        A  ++  + +
Sbjct: 108 NILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQK 167

Query: 425 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
            G  P   +   L+ GL   G ++   +  +EMLN
Sbjct: 168 LGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLN 202


>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 520

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 151/325 (46%), Gaps = 7/325 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           R  R     ++ ++D L K+   ++ ++    M   G+   + T+ ++   +C AG+  E
Sbjct: 144 RSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLME 203

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A    + M +  +  ++   N+L+  +C++              KK V PD   ++IL++
Sbjct: 204 AFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMD 263

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+   G V++A + F  MV+    NP+ V +Y   +  L +GK+VDEA+  LR M  +N 
Sbjct: 264 GYCLVGEVQKAKQIFLVMVQT-GVNPD-VYSYNIIINGLCKGKRVDEAMNLLREMLHKNM 321

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP-NLIMYNAVIGLLCNNDDVDN 344
            P    +S+ +D L KL   T  + L   M   G    P NL+ YN+++  LC N ++D 
Sbjct: 322 IPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRG---QPANLVTYNSLLDGLCKNQNLDK 378

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
               F +M   G  P+  TY  + + L K  R+ + +  F  ++   +          I+
Sbjct: 379 AIALFMKMKERGIQPNKYTYTALIDGLCKGGRLKKGQALFQHLLVKGYCIDVWTYTVMIS 438

Query: 405 MLLDADEPEIAIEIWNYILENGILP 429
            L      + A+ + + + +NG +P
Sbjct: 439 GLCKEGMFDEALAMKSKMEDNGCIP 463



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 142/331 (42%), Gaps = 17/331 (5%)

Query: 137 RVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSM---HGVEQDVVAVNSLLSAI 192
           + M+  G++  L T + + + +C  G   +   SF V+      G + + + +N+L+  +
Sbjct: 34  KQMEAKGIVPDLVTLSILINCFCHLG---QMAFSFSVLGKILKLGYQPNTIILNTLMKGL 90

Query: 193 CRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           C +  +  ++L F ++V  +    D  S+ ILL G  K G    A K     +E     P
Sbjct: 91  CLK-GEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLCKIGETRCAIKLL-RTIEDRSTRP 148

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           + V+ Y T +  L + K VDEA      M     FP +  ++  +           A  L
Sbjct: 149 D-VVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAFGL 207

Query: 312 WDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFE-- 369
            + M  I  N+ PN+  YN +I  LC    V         M   G  PD + Y+++ +  
Sbjct: 208 LNEM--ILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGY 265

Query: 370 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
           CL+    V + ++ F  M++    P   +    I  L      + A+ +   +L   ++P
Sbjct: 266 CLV--GEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIP 323

Query: 430 LEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
              + + L+ GL  LGR++ +    +EM +R
Sbjct: 324 DTVTYSSLIDGLCKLGRITTILDLTKEMHHR 354



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 92/208 (44%), Gaps = 3/208 (1%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y++N++++ L K  R ++  N +R M    ++    T++S+ D  C  G+    +     
Sbjct: 291 YSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTKE 350

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M   G   ++V  NSLL  +C+ +N       F+   ++ + P+  ++  L++G  K G 
Sbjct: 351 MHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGGR 410

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +++    F  ++   +     V  Y   +  L +    DEAL     M+   C P    F
Sbjct: 411 LKKGQALFQHLL--VKGYCIDVWTYTVMISGLCKEGMFDEALAMKSKMEDNGCIPNAVTF 468

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGF 320
              +  L++ +++  A +L   M+  G 
Sbjct: 469 EIIIRSLLEKDENDKAEKLLHEMIAKGL 496



 Score = 46.2 bits (108), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 40/209 (19%), Positives = 84/209 (40%), Gaps = 2/209 (0%)

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
           ++ +   L +L++ K     +   + M+ +   P L   S  ++    L     +  +  
Sbjct: 10  IIEFGKILGSLVKMKHYPTVISLSKQMEAKGIVPDLVTLSILINCFCHLGQMAFSFSVLG 69

Query: 314 IMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 373
            ++ +G+   PN I+ N ++  LC   +V     F D++V  G   D ++Y ++   L K
Sbjct: 70  KILKLGYQ--PNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLCK 127

Query: 374 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 433
                   K    +     +P  +  +T I  L      + A ++++ +   GI P   +
Sbjct: 128 IGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVIT 187

Query: 434 ANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
              L+ G    G+L +      EM+ + I
Sbjct: 188 YTTLICGFCLAGQLMEAFGLLNEMILKNI 216


>gi|302825350|ref|XP_002994298.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
 gi|300137829|gb|EFJ04642.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
          Length = 577

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/349 (22%), Positives = 161/349 (46%), Gaps = 43/349 (12%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           + ++ + +C AG+ D+A    D M   GV+ DV+  ++L+  +CR+  +   ALE    +
Sbjct: 2   YTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRK-GRIDEALEQFKSM 60

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFE----WNPEHVLAYETFLITLI 265
            +   P+  ++  ++ G  K   ++E  + F +M +R+E      P+ V++Y T +  L 
Sbjct: 61  GEECSPNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPD-VISYSTVIDALC 119

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN 325
           + ++VD+A ++ + M+   C P +  +S+ +D L K++    A  L  +M   G +++P 
Sbjct: 120 KAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSL--LMQLKGEDMVPR 177

Query: 326 LIMYNAVIG-----------------------------------LLCNNDDVDNVFRFFD 350
            + YNAV+                                     L  ND+ +   +FF+
Sbjct: 178 AMYYNAVVNGFKRQGKPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFE 237

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
           +++  G  P+ +TYN+    L K  +V E  +   EM++++  P  +  ++ I     A 
Sbjct: 238 RLLKSGKKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAG 297

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
             + A +++  ++ +  +P   +   LL G     +  +  R  E+M+N
Sbjct: 298 RMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVN 346



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 76/338 (22%), Positives = 156/338 (46%), Gaps = 11/338 (3%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           RG ++     + ++  L + GR ++     + M E+   ++ T+ ++ +  C A + DE 
Sbjct: 28  RGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMGEECSPNVITYNTVVNGLCKANRIDEG 87

Query: 167 VMSFDVM-----SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSF 220
           +  FD M     + HG E DV++ ++++ A+C+ + +  +A E+  R++ +   P+  ++
Sbjct: 88  LELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQ-RVDKAYEYFKRMRAVGCAPNVVTY 146

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
           + L++G  K   V+EA     ++  + E      + Y   +    R  +  E L+ L  M
Sbjct: 147 SSLIDGLCKVDRVDEAYSLLMQL--KGEDMVPRAMYYNAVVNGFKRQGKPSECLELLLHM 204

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
           K +     +  F+  L  L K ++   A Q ++ ++  G    PN++ YN  +  LC   
Sbjct: 205 KEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKK--PNVVTYNVAVHGLCKAG 262

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
            VD  +R   +MV     PD +TY+ I +   K  R+ + +  F  M+ +E  P P+   
Sbjct: 263 KVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFM 322

Query: 401 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 438
           T +    +  +   A  +   ++  G +P   + N L+
Sbjct: 323 TLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLM 360



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 91/381 (23%), Positives = 168/381 (44%), Gaps = 26/381 (6%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMK-EDGVLSLPTFASIFDSYCG 159
           F R    G   +   ++ ++D L K  R ++ ++ +  +K ED V     + ++ + +  
Sbjct: 131 FKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAMYYNAVVNGFKR 190

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGD 218
            GK  E +     M   G   +++  N++L A+ + + Q  +A +F  R+ K    P+  
Sbjct: 191 QGKPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQ-EKACQFFERLLKSGKKPNVV 249

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++ + + G  K G V+EA +   EMVE  +  P+ V+ Y + +    +  ++D+A     
Sbjct: 250 TYNVAVHGLCKAGKVDEAYRILLEMVES-KVTPD-VITYSSIIDGFCKAGRMDKADDVFT 307

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            M    C P    F   L    +   S  A ++ + MV  GF  +P L  YN ++  +C 
Sbjct: 308 RMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGF--IPGLQTYNVLMDCVCG 365

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
            D V++    + +M      PD+ TY  + +CL + +RV E ++F   M  +   P    
Sbjct: 366 ADSVESALEIYHKMKRKKRQPDANTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAI 425

Query: 399 CATAITML------------LD-------ADEPEIAIEIWNYILENGILPLEASANELLV 439
           C   + +L            LD       A EP+ A+E+   ++  G+ P EA+   +L 
Sbjct: 426 CHALVEVLCKQGEVDEACSVLDNVVEICKAGEPDEAVEVIEQMVLKGVRPDEATYVAVLR 485

Query: 440 GLRNLGRLSDVRRFAEEMLNR 460
            L  L R+       E+M +R
Sbjct: 486 SLCGLDRVDSAIAEFEKMASR 506



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 146/359 (40%), Gaps = 30/359 (8%)

Query: 93  DSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTF 150
           D    A  FF R    G++ +   +N+ V  L K G+ ++ +  +  M E  V   + T+
Sbjct: 227 DEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITY 286

Query: 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK 210
           +SI D +C AG+ D+A   F  M +H      V   +LL      E++ SR  E     +
Sbjct: 287 SSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGF--SEHKKSR--EAFRVHE 342

Query: 211 KIVD----PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
            +V+    P   ++ +L++      +VE A + + +M +R +  P+    Y   +  L R
Sbjct: 343 DMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKM-KRKKRQPD-ANTYAPLIQCLCR 400

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNL 326
            ++VDEA +FL VM+ +N  P        +++L K  +   A  + D +V I        
Sbjct: 401 ARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEI-------- 452

Query: 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 386
                     C   + D      +QMV  G  PD  TY  +   L    RV      F +
Sbjct: 453 ----------CKAGEPDEAVEVIEQMVLKGVRPDEATYVAVLRSLCGLDRVDSAIAEFEK 502

Query: 387 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
           M      P  +     I     AD  + A  I+  ++  G  P   +   L   LR+ G
Sbjct: 503 MASRGCAPGLVTYTLLIGEACSADMADDAFRIFEAMVAAGFTPQAQTMRTLSSCLRDAG 561



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 1/93 (1%)

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
           MY  VI   C    VD  F   D+M   G   D L ++ + + L +  R+ E  + F  M
Sbjct: 1   MYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSM 60

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 420
              E  P  +   T +  L  A+  +  +E+++
Sbjct: 61  -GEECSPNVITYNTVVNGLCKANRIDEGLELFD 92


>gi|125526118|gb|EAY74232.1| hypothetical protein OsI_02112 [Oryza sativa Indica Group]
          Length = 556

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 102/443 (23%), Positives = 179/443 (40%), Gaps = 42/443 (9%)

Query: 51  SSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFF-RWAGRGQ 109
           S+A     +L+    +D  ++L   GI P P +  ++       P SA+    RWAG   
Sbjct: 17  SAAAAASTVLSILRGED-PASLPAAGIDPCPAVFQQLRPSLPTVPDSALPALARWAGEAT 75

Query: 110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS 169
                     V +L   G F   W  + +        L  FA +   Y   G+   A+ +
Sbjct: 76  ---------AVSLLASRGLFAAAWRLL-LAPSPTPPPLAAFAPLVRRYARLGRAPAALRA 125

Query: 170 FDVMSMHG----VEQDVVAVNSLLS----AICRQENQTSRALEFLNRVKKI---VDPDGD 218
           F  +  H        D+ A  SLL+    A+C+ E     A+E   R ++      PD  
Sbjct: 126 FQFLRRHPDRYMAGGDIPAAASLLNMAVDALCK-EGHPRAAVELFERWRREEPDSPPDER 184

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++ ILL GW + G +++  K + EM  R       V+ Y T +  L   ++ D+A+  L 
Sbjct: 185 AYNILLHGWSRAGRLDKVGKLWAEM--RLAGVRPTVVTYGTLIEGLCVKRRPDQAIALLD 242

Query: 279 VMKGEN-------CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA 331
            M+ E        C P +   + A     +  D+   ++ + +     + + PN+  +N+
Sbjct: 243 EMREEGIEANLLTCNPIVYALAQA----GRFQDAHKVLEKFPL-----YGVAPNISTFNS 293

Query: 332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
           ++   C + D+         M   G  P + TYN  F    KN  V     F+ +MI N 
Sbjct: 294 LVMGYCKHGDLAGASSVLKVMTERGISPTTRTYNYFFMTFAKNSDVESGMNFYSKMIGNG 353

Query: 392 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 451
           + P  L     + ML  A+  E+ +++   +  +G  P  A++  L+  L    +  +  
Sbjct: 354 YSPDQLTYVLLVKMLSRANRLELVVQMIQEMRTHGFEPDLATSTMLIHLLCRRHQFEEAC 413

Query: 452 RFAEEMLNRRILIYEVTMHKLKK 474
              E+M  R I+   +T  KL +
Sbjct: 414 AEFEDMFKRGIVPQYITYQKLMR 436


>gi|356525427|ref|XP_003531326.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Glycine max]
          Length = 521

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 148/322 (45%), Gaps = 14/322 (4%)

Query: 123 LGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD 181
           L   GR +  +  V  + + GV ++   + ++ D +C  G+ D+A+     MS  G   D
Sbjct: 199 LCSGGRVDLAYELVVGVIKGGVKVNSLVYNALIDGFCRMGRVDKAMKIKAFMSRTGCVPD 258

Query: 182 VVAVNSLLSAICRQE--NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKT 239
           +V  N LL+  C +   ++  R +E + R    V+PD  S+  LL+G+ K   V+ A+  
Sbjct: 259 LVTYNILLNYCCEEGMVDEAVRLVETMERSG--VEPDLYSYNELLKGFCKANMVDRAHLM 316

Query: 240 FGEMVERFEWNPE-HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDI 298
              MVER +      V++Y T +    + ++  +  +    M G+   P +  F+  +D 
Sbjct: 317 ---MVERMQTKGMCDVVSYNTVITAFCKARRTRKGYELFEEMCGKGIRPDMVTFNILIDA 373

Query: 299 LVKLNDSTHAVQ-LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGA 357
            ++   STH V+ L D M  +   ++P+ I Y AV+  LC N  VD     F  MV +G 
Sbjct: 374 FLR-EGSTHVVKKLLDEMTKM--RVLPDCIFYTAVVDHLCKNGKVDVAHSVFRDMVENGV 430

Query: 358 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 417
            PD ++YN +     K  RV +    F EM      P  +     +  L+   +  +A  
Sbjct: 431 NPDVISYNALLNGFCKTSRVMDAMHLFDEMQSKGLYPDEVTYKLIVGGLIRGKKISLACR 490

Query: 418 IWNYILENGILPLEASANELLV 439
           +W+ ++E G   L    +E LV
Sbjct: 491 VWDQMMERG-FTLNRHLSETLV 511



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 156/359 (43%), Gaps = 11/359 (3%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           +A+N  +++L +  R E        M   G    + ++  I D+ C A ++DEA   +  
Sbjct: 120 WAFNTYLNLLCRQNRLETALELFHSMPSKGRDPDVVSYTIIIDALCNAKRFDEAAKVWRR 179

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL-NRVKKIVDPDGDSFAILLEGWEKEG 231
           +   G+  D  A  +L+  +C    +   A E +   +K  V  +   +  L++G+ + G
Sbjct: 180 LIDKGLSPDYKACVALVVGLC-SGGRVDLAYELVVGVIKGGVKVNSLVYNALIDGFCRMG 238

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            V++A K    M  R    P+ ++ Y   L        VDEA++ +  M+     P L  
Sbjct: 239 RVDKAMKIKAFM-SRTGCVPD-LVTYNILLNYCCEEGMVDEAVRLVETMERSGVEPDLYS 296

Query: 292 FSNALDILVKLN--DSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
           ++  L    K N  D  H + + + M   G   M +++ YN VI   C        +  F
Sbjct: 297 YNELLKGFCKANMVDRAH-LMMVERMQTKG---MCDVVSYNTVITAFCKARRTRKGYELF 352

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 409
           ++M   G  PD +T+N++ +  ++    H V+K   EM K    P  +     +  L   
Sbjct: 353 EEMCGKGIRPDMVTFNILIDAFLREGSTHVVKKLLDEMTKMRVLPDCIFYTAVVDHLCKN 412

Query: 410 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 468
            + ++A  ++  ++ENG+ P   S N LL G     R+ D     +EM ++ +   EVT
Sbjct: 413 GKVDVAHSVFRDMVENGVNPDVISYNALLNGFCKTSRVMDAMHLFDEMQSKGLYPDEVT 471



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/364 (20%), Positives = 154/364 (42%), Gaps = 11/364 (3%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F     +G+     ++ +++D L    RF++     R + + G+        ++    C 
Sbjct: 142 FHSMPSKGRDPDVVSYTIIIDALCNAKRFDEAAKVWRRLIDKGLSPDYKACVALVVGLCS 201

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR--QENQTSRALEFLNRVKKIVDPDG 217
            G+ D A      +   GV+ + +  N+L+   CR  + ++  +   F++R   +  PD 
Sbjct: 202 GGRVDLAYELVVGVIKGGVKVNSLVYNALIDGFCRMGRVDKAMKIKAFMSRTGCV--PDL 259

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA-LKF 276
            ++ ILL    +EG V+EA +   E +ER    P+ + +Y   L    +   VD A L  
Sbjct: 260 VTYNILLNYCCEEGMVDEAVRLV-ETMERSGVEPD-LYSYNELLKGFCKANMVDRAHLMM 317

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLL 336
           +  M+ +     + + +  +    K   +    +L++ M G G  + P+++ +N +I   
Sbjct: 318 VERMQTKGMCDVVSY-NTVITAFCKARRTRKGYELFEEMCGKG--IRPDMVTFNILIDAF 374

Query: 337 CNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 396
                   V +  D+M      PD + Y  + + L KN +V      F +M++N   P  
Sbjct: 375 LREGSTHVVKKLLDEMTKMRVLPDCIFYTAVVDHLCKNGKVDVAHSVFRDMVENGVNPDV 434

Query: 397 LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 456
           ++    +           A+ +++ +   G+ P E +   ++ GL    ++S   R  ++
Sbjct: 435 ISYNALLNGFCKTSRVMDAMHLFDEMQSKGLYPDEVTYKLIVGGLIRGKKISLACRVWDQ 494

Query: 457 MLNR 460
           M+ R
Sbjct: 495 MMER 498



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/221 (20%), Positives = 90/221 (40%), Gaps = 4/221 (1%)

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           K G + +A   F +M E         + Y  F+  L+R  ++  A  + R       F  
Sbjct: 22  KAGLINQAIYLFDQMTE--SNCRVFSVDYNRFIGVLLRHSRLHLAHHYYRRHVIPRGFSL 79

Query: 289 LKF-FSNALDILVKLNDSTHAVQLWDIMVGI-GFNLMPNLIMYNAVIGLLCNNDDVDNVF 346
           L F +S  +  L    ++ +   +  +++ +     +P++  +N  + LLC  + ++   
Sbjct: 80  LPFTYSRFISALCSAPNNINLPLIHSLLLDMDSLGFVPDIWAFNTYLNLLCRQNRLETAL 139

Query: 347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406
             F  M   G  PD ++Y +I + L   KR  E  K +  +I     P    C   +  L
Sbjct: 140 ELFHSMPSKGRDPDVVSYTIIIDALCNAKRFDEAAKVWRRLIDKGLSPDYKACVALVVGL 199

Query: 407 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
                 ++A E+   +++ G+       N L+ G   +GR+
Sbjct: 200 CSGGRVDLAYELVVGVIKGGVKVNSLVYNALIDGFCRMGRV 240



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 89/201 (44%), Gaps = 10/201 (4%)

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV---KLNDSTHAV 309
           H LAY + +  L++   +++A+     M   NC      ++  + +L+   +L+ + H  
Sbjct: 9   HRLAYRSQISKLVKAGLINQAIYLFDQMTESNCRVFSVDYNRFIGVLLRHSRLHLAHHYY 68

Query: 310 QLWDIMVGIGFNLMPNLIMYNAVIGLLC---NNDDVDNVFRFFDQMVFHGAFPDSLTYNM 366
           +    ++  GF+L+P    Y+  I  LC   NN ++  +      M   G  PD   +N 
Sbjct: 69  RRH--VIPRGFSLLP--FTYSRFISALCSAPNNINLPLIHSLLLDMDSLGFVPDIWAFNT 124

Query: 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 426
               L +  R+    + FH M      P  ++    I  L +A   + A ++W  +++ G
Sbjct: 125 YLNLLCRQNRLETALELFHSMPSKGRDPDVVSYTIIIDALCNAKRFDEAAKVWRRLIDKG 184

Query: 427 ILPLEASANELLVGLRNLGRL 447
           + P   +   L+VGL + GR+
Sbjct: 185 LSPDYKACVALVVGLCSGGRV 205


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 98/405 (24%), Positives = 182/405 (44%), Gaps = 10/405 (2%)

Query: 91  SYDSPSSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLP 148
           S+D   +A   FR ++  G   +  ++N+++ +L + G+ ++  + +  M+  G V  + 
Sbjct: 229 SFDGIRTAFRVFREYSEVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVV 288

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           +++ I D YC   +  + +   + +   G++ +    NS++S +C+   +   A + L  
Sbjct: 289 SYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKT-GRVVEAEQVLRV 347

Query: 209 VK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           +K + + PD   +  L+ G+ K GNV    K F EM +R +  P+ V  Y + +  L + 
Sbjct: 348 MKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEM-KRKKIVPDFV-TYTSMIHGLCQA 405

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
            +V EA K    M  +   P    ++  +D   K  +   A  L + MV  G  L PN++
Sbjct: 406 GKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKG--LTPNVV 463

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            Y A++  LC   +VD       +M   G  P+  TYN +   L K   + +  K   EM
Sbjct: 464 TYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEM 523

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
               + P  +   T +       E   A E+   +L+ G+ P   + N L+ G    G L
Sbjct: 524 DLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGML 583

Query: 448 SDVRRFAEEMLNRRILIYEVTMHKLKKAF--YNESRSMRDIFDSL 490
            D  R  + ML++ I+    T + L K +   N  R+  +I+  +
Sbjct: 584 EDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGM 628



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 78/387 (20%), Positives = 160/387 (41%), Gaps = 7/387 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G + + Y +N ++  L K GR  +    +RVMK   +      + ++   +  +G    
Sbjct: 316 KGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSV 375

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
               FD M    +  D V   S++  +C+          F   + K + PD  ++  L++
Sbjct: 376 EYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALID 435

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+ K G ++EA     +MVE+    P +V+ Y   +  L +  +VD A + L  M  +  
Sbjct: 436 GYCKAGEMKEAFSLHNQMVEK-GLTP-NVVTYTALVDGLCKCGEVDIANELLHEMSEKGL 493

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P +  ++  ++ L K+ +   AV+L + M   GF   P+ I Y  ++   C   ++   
Sbjct: 494 QPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGF--FPDTITYTTIMDAYCKMGEMAKA 551

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
                 M+  G  P  +T+N++      +  + + E+    M+     P      + +  
Sbjct: 552 HELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQ 611

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 465
               +     IEI+  +   G++P   + N L+ G      + +     +EM+ +   + 
Sbjct: 612 YCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLT 671

Query: 466 EVTMHKLKKAFYNESR--SMRDIFDSL 490
             + + L K FY   +    R +F+ +
Sbjct: 672 AASYNSLIKGFYKRKKFEEARKLFEEM 698



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 76/169 (44%), Gaps = 5/169 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +  ++D   K G   +    +R+M + G+  ++ TF  + + +C +G  ++       M
Sbjct: 534 TYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWM 593

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G+  +    NSL+   C + N  +    +     + V PD +++ IL++G  K  N+
Sbjct: 594 LDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNM 653

Query: 234 EEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           +EA     EMVE+ F        +Y + +    + K+ +EA K    M+
Sbjct: 654 KEAWFLHKEMVEKGFSLTAA---SYNSLIKGFYKRKKFEEARKLFEEMR 699


>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 724

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 95/413 (23%), Positives = 187/413 (45%), Gaps = 21/413 (5%)

Query: 76  GIIPTPDLVHEVLQ--LSYDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQM 132
           G +P  +  ++V+     +D  + A     R   RG       +  +++ L K GR +  
Sbjct: 276 GCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGRVDAA 335

Query: 133 WNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEA--VMSFDVMSMHGVEQDVVAVNSLL 189
            +   R+ K   V+    F ++   +   G+ D+A  V+S D+++ +G+  DV   NSL+
Sbjct: 336 KDLFYRIPKPTSVI----FNTLIHGFVTHGRLDDAKAVLS-DMVTSYGIVPDVCTYNSLI 390

Query: 190 SAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFE 248
               ++      ALE L  ++ K   P+  S+ IL++G+ K G ++EA     EM    +
Sbjct: 391 YGYWKK-GLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSA--D 447

Query: 249 WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHA 308
               + + +   +    +  ++ EA++  R M  + C P +  F++ +  L ++++  HA
Sbjct: 448 GLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHA 507

Query: 309 VQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIF 368
           + L   M+  G  ++ N + YN +I       ++    +  ++MVF G+  D +TYN + 
Sbjct: 508 LWLLRDMISEG--VVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLI 565

Query: 369 ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 428
           + L +   V +    F +M+++   P+ ++C   I  L  +   E A+E    ++  G  
Sbjct: 566 KGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGST 625

Query: 429 PLEASANELLVGLRNLGRLSD----VRRFAEEMLNRRILIYEVTMHKLKKAFY 477
           P   + N L+ GL   GR+ D     R+   E +    + Y   M  L K  +
Sbjct: 626 PDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSWLCKGGF 678



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 138/290 (47%), Gaps = 7/290 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G + + Y++ ++VD   K G+ ++ +N +  M  DG+  +   F  +  ++C   +  E
Sbjct: 412 KGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPE 471

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL-NRVKKIVDPDGDSFAILL 224
           AV  F  M   G + DV   NSL+S +C + ++   AL  L + + + V  +  ++  L+
Sbjct: 472 AVEIFREMPRKGCKPDVYTFNSLISGLC-EVDEIKHALWLLRDMISEGVVANTVTYNTLI 530

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
             + + G ++EA K   EMV  F+ +    + Y + +  L R  +VD+A      M  + 
Sbjct: 531 NAFLRRGEIKEARKLVNEMV--FQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDG 588

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
             P+    +  ++ L +      AV+    MV  G    P+++ +N++I  LC    +++
Sbjct: 589 LVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGST--PDIVTFNSLINGLCRAGRIED 646

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
               F ++   G  PD++TYN +   L K   V++      E I++ + P
Sbjct: 647 GLTMFRKLQAEGIPPDTVTYNTLMSWLCKGGFVYDACLLLDEGIEDGFVP 696



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 68/346 (19%), Positives = 134/346 (38%), Gaps = 44/346 (12%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF  +    C   + +EA    + M + G   D +    L++ +C+   +   A +   R
Sbjct: 283 TFNDVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLCKI-GRVDAAKDLFYR 341

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           + K   P    F  L+ G+   G +++A     +MV  +   P+ V  Y + +    +  
Sbjct: 342 IPK---PTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPD-VCTYNSLIYGYWKKG 397

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
            V  AL+ LR M+ + C                                      PN+  
Sbjct: 398 LVGLALEVLRDMRNKGC-------------------------------------KPNVYS 420

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           Y  ++   C    +D  +   ++M   G  P+++ +N +     K  R+ E  + F EM 
Sbjct: 421 YTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMP 480

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
           +   +P      + I+ L + DE + A+ +   ++  G++    + N L+      G + 
Sbjct: 481 RKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIK 540

Query: 449 DVRRFAEEMLNRRILIYEVTMHKLKKAF--YNESRSMRDIFDSLER 492
           + R+   EM+ +  L+ E+T + L K      E    R +F+ + R
Sbjct: 541 EARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLR 586



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 91/385 (23%), Positives = 154/385 (40%), Gaps = 47/385 (12%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAG--RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVR 137
           TP  + ++L+L  D  S++++ F W G  +G R S   + +++  LG NG F+ +   + 
Sbjct: 71  TPFQLCKLLELPLDV-STSMELFSWTGSQKGYRHSFDVYQVLIGKLGSNGEFKTIDRLLM 129

Query: 138 VMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
            MK++G V     F SI   Y  AG                                   
Sbjct: 130 QMKDEGIVFKESLFISIMRDYDKAG---------------------------------FP 156

Query: 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
            QT+R +  +  V    +P   S+ ++LE        + A   F +M+ R    P  +  
Sbjct: 157 GQTTRLMLEMRNVYS-CEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSR--KIPPTLFT 213

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
           +   +  L    +VD AL  LR M    C P    +   +  L K N    A+QL + M 
Sbjct: 214 FGVVMKALCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMF 273

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
            +G   +P+   +N VI  LC  D ++   +  ++M+  G  PD +TY  +   L K  R
Sbjct: 274 LMG--CVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGR 331

Query: 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW-NYILENGILPLEASAN 435
           V   +  F+ + K    PT +   T I   +     + A  +  + +   GI+P   + N
Sbjct: 332 VDAAKDLFYRIPK----PTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYN 387

Query: 436 ELLVGLRNLGRLSDVRRFAEEMLNR 460
            L+ G    G +        +M N+
Sbjct: 388 SLIYGYWKKGLVGLALEVLRDMRNK 412



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 71/333 (21%), Positives = 136/333 (40%), Gaps = 11/333 (3%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           +L TF  +  + C   + D A+     M+ HG   + V   +L+ ++ +  N+ + AL+ 
Sbjct: 210 TLFTFGVVMKALCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKC-NRVNEALQL 268

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L  +  +   PD ++F  ++ G  K   + EA K    M+ R  + P+ +  Y   +  L
Sbjct: 269 LEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIR-GFTPDDI-TYGYLMNGL 326

Query: 265 IRGKQVDEALK-FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLM 323
            +  +VD A   F R+ K     PT   F+  +   V       A  +   MV   + ++
Sbjct: 327 CKIGRVDAAKDLFYRIPK-----PTSVIFNTLIHGFVTHGRLDDAKAVLSDMV-TSYGIV 380

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           P++  YN++I        V         M   G  P+  +Y ++ +   K  ++ E    
Sbjct: 381 PDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNL 440

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
            +EM  +  +P  +     I+          A+EI+  +   G  P   + N L+ GL  
Sbjct: 441 LNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCE 500

Query: 444 LGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
           +  +        +M++  ++   VT + L  AF
Sbjct: 501 VDEIKHALWLLRDMISEGVVANTVTYNTLINAF 533



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 57/258 (22%), Positives = 103/258 (39%), Gaps = 13/258 (5%)

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR-----GKQVDE 272
           D + +L+      G  +  ++   +M +      E ++  E+  I+++R     G     
Sbjct: 106 DVYQVLIGKLGSNGEFKTIDRLLMQMKD------EGIVFKESLFISIMRDYDKAGFPGQT 159

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAV 332
               L +    +C PT K ++  L+ILV  N    A  ++  M  +   + P L  +  V
Sbjct: 160 TRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDM--LSRKIPPTLFTFGVV 217

Query: 333 IGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 392
           +  LC  ++VD+       M  HG  P+S+ Y  +   L K  RV+E  +   EM     
Sbjct: 218 MKALCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGC 277

Query: 393 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 452
            P        I  L   D    A ++ N +L  G  P + +   L+ GL  +GR+   + 
Sbjct: 278 VPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGRVDAAKD 337

Query: 453 FAEEMLNRRILIYEVTMH 470
               +     +I+   +H
Sbjct: 338 LFYRIPKPTSVIFNTLIH 355


>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 935

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 148/352 (42%), Gaps = 36/352 (10%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           ++++   Y   G+ +EA    D MS  GV  D+   N+++S + +       +   L   
Sbjct: 387 YSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQ 446

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER--FEWNPEH-------------- 253
            + + PD  +F   + G+ K G + EA K F EM++      NP +              
Sbjct: 447 GRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLM 506

Query: 254 -----------------VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
                            V     F+  L++  +V EALK    +K +   P +  +S+ +
Sbjct: 507 EALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLI 566

Query: 297 DILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG 356
               K  +   A +L D M   G  + PN+ +YNA++  LC + D+    + FD M   G
Sbjct: 567 SGFCKQGEVEKAFELHDEMCLKG--IAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKG 624

Query: 357 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 416
             PDS+TY+ + +   K++ V E    FHEM     QP        +       + E A+
Sbjct: 625 LEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAM 684

Query: 417 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 468
            ++  +L+ G      S N L+ G     ++ +  +  +EM+ ++I+   VT
Sbjct: 685 NLFREMLQKG-FATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVT 735



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 95/421 (22%), Positives = 183/421 (43%), Gaps = 17/421 (4%)

Query: 59  ILAHASSDDIESA------LACTGIIPTPDLVHEVLQ-LSYDSPSSAVDFFRWAGRGQRL 111
           I+ +AS   IE A      ++C+G+ P     + ++  LS          +    +G+ L
Sbjct: 391 IMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGL 450

Query: 112 SPYAWNLMVDVLG--KNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVM 168
            P A      +LG  K G+  +       M + G++ + P +  + + +  AG   EA+ 
Sbjct: 451 KPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALS 510

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGW 227
            F  +   GV  DV   ++ +  + +   +   AL+  + +K K + PD  +++ L+ G+
Sbjct: 511 IFRHLHALGVLPDVQTCSAFIHGLLKN-GRVQEALKVFSELKEKGLVPDVFTYSSLISGF 569

Query: 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
            K+G VE+A +   EM    +    ++  Y   +  L +   +  A K    M  +   P
Sbjct: 570 CKQGEVEKAFELHDEMC--LKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEP 627

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFR 347
               +S  +D   K  +   A  L+  M   G  + P+  +YNA++   C   D++    
Sbjct: 628 DSVTYSTMIDGYCKSENVAEAFSLFHEMPSKG--VQPHSFVYNALVHGCCKEGDMEKAMN 685

Query: 348 FFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 407
            F +M+  G F  +L++N + +   K+ ++ E  + F EMI  +  P  +   T I    
Sbjct: 686 LFREMLQKG-FATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHC 744

Query: 408 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEV 467
            A + E A  ++  + E  ++    +   L+ G   LG+ S+V    E+M+ + +   EV
Sbjct: 745 KAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEV 804

Query: 468 T 468
           T
Sbjct: 805 T 805



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 146/335 (43%), Gaps = 8/335 (2%)

Query: 125 KNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV 183
           KNGR ++       +KE G++  + T++S+   +C  G+ ++A    D M + G+  ++ 
Sbjct: 536 KNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIF 595

Query: 184 AVNSLLSAICRQEN-QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
             N+L+  +C+  + Q +R L F    +K ++PD  +++ +++G+ K  NV EA   F E
Sbjct: 596 IYNALVDGLCKSGDIQRARKL-FDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHE 654

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
           M  +      H   Y   +    +   +++A+   R M  +  F T   F+  +D   K 
Sbjct: 655 MPSK--GVQPHSFVYNALVHGCCKEGDMEKAMNLFREML-QKGFATTLSFNTLIDGYCKS 711

Query: 303 NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSL 362
                A QL+  M  I   +MP+ + Y  VI   C    ++     F +M       D++
Sbjct: 712 CKIQEASQLFQEM--IAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTV 769

Query: 363 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 422
           TY  +     K  +  EV   F +M+    +P  +     I      D    A ++ + +
Sbjct: 770 TYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEV 829

Query: 423 LENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           +  G+L      + L+  L     L++  +  +EM
Sbjct: 830 VGKGMLTKGTIHDLLITALCKREDLTEASKLLDEM 864



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 95/426 (22%), Positives = 178/426 (41%), Gaps = 51/426 (11%)

Query: 81  PDLVHEVL-QLSYDSPSSAVDFFRWA----GRGQRLSPYAWNLMVDVLGK------NGRF 129
           PD++  VL Q     P   +DFF W+    G  Q L  ++  L V +         NG  
Sbjct: 69  PDVIRAVLHQNQVGDPKRLLDFFYWSQSQMGVPQFLDSFSI-LAVQLCNSELFGLANGVL 127

Query: 130 EQM----WNAVRVM-------KEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGV 178
            QM    +++  ++       +  G  S   F  + DSY   G  DEA   F V     +
Sbjct: 128 TQMIRTPYSSSSILDSVLFWFRNYGGSSPVVFDILIDSYKRMGMLDEAANVFFVAKNDSI 187

Query: 179 EQDVVAVNSLLS------------------AICRQENQTSRALEFLNRVKKIVDPDGDSF 220
              ++  NSL S                   +CR +      L F    K  + PD ++ 
Sbjct: 188 LISLIRCNSLRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNAC 247

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
           + L++G+ +EG+++E  +    MV      P +++ Y   +  L +  ++++A + L+ M
Sbjct: 248 SALIDGFMREGDIDEVLRIKDVMVSC--GIPINLITYNVLIHGLCKFGKMEKAAEILKGM 305

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
               C P  + F   ++   + ++   A++L D M     NL+P+ + Y A+I  LC+  
Sbjct: 306 ITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEK--RNLVPSAVSYGAMINGLCHCK 363

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
           D+    +  ++M F G  P+ + Y+ +        R+ E  +    M  +   P      
Sbjct: 364 DLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYN 423

Query: 401 TAITMLLDADEPEIAIEIWNYILE---NGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
             I+ L  A + E   E   Y+LE    G+ P   +    ++G    G++++  ++ +EM
Sbjct: 424 AIISCLSKAGKME---EASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEM 480

Query: 458 LNRRIL 463
           L+  ++
Sbjct: 481 LDHGLM 486



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 80/378 (21%), Positives = 156/378 (41%), Gaps = 11/378 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTF---ASIFDSYCGAGKY 163
           +G   + Y + ++   L +  R  +       M++ G+   P +   +++ D +   G  
Sbjct: 203 KGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLK--PDYNACSALIDGFMREGDI 260

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAI 222
           DE +   DVM   G+  +++  N L+  +C+   +  +A E L  +  +   P+  +F +
Sbjct: 261 DEVLRIKDVMVSCGIPINLITYNVLIHGLCKF-GKMEKAAEILKGMITLGCKPNSRTFCL 319

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+EG+ +E N+  A +   EM E+    P  V +Y   +  L   K +  A K L  M  
Sbjct: 320 LIEGYCREHNMGRALELLDEM-EKRNLVPSAV-SYGAMINGLCHCKDLSLANKLLEKMTF 377

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
               P +  +S  +           A +L D M   G  + P++  YNA+I  L     +
Sbjct: 378 SGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSG--VAPDIFCYNAIISCLSKAGKM 435

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
           +    +  ++   G  PD++T+        K  ++ E  K+F EM+ +   P        
Sbjct: 436 EEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVL 495

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
           I     A     A+ I+ ++   G+LP   + +  + GL   GR+ +  +   E+  + +
Sbjct: 496 INGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGL 555

Query: 463 LIYEVTMHKLKKAFYNES 480
           +    T   L   F  + 
Sbjct: 556 VPDVFTYSSLISGFCKQG 573



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/358 (20%), Positives = 134/358 (37%), Gaps = 74/358 (20%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGA 160
           F     +G +   + +N +V    K G  E+  N  R M + G  +  +F ++ D YC +
Sbjct: 652 FHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKS 711

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSF 220
            K  EA   F  M                                   + K + PD  ++
Sbjct: 712 CKIQEASQLFQEM-----------------------------------IAKQIMPDHVTY 736

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
             +++   K G +EEAN  F EM ER                       + + + +  +M
Sbjct: 737 TTVIDWHCKAGKMEEANLLFKEMQER---------------------NLIVDTVTYTSLM 775

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
            G N                KL  S+    L++ MV  G  + P+ + Y  VI   C  D
Sbjct: 776 YGYN----------------KLGQSSEVFALFEKMVAKG--VKPDEVTYGLVIYAHCKED 817

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
           ++   F+  D++V  G       ++++   L K + + E  K   EM +   +P+   C+
Sbjct: 818 NLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACS 877

Query: 401 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
           T +    +A + + A  ++  +   G++P   +  +L+ G  N     D R   ++++
Sbjct: 878 TLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLVNGNLNDTDSEDARNLIKQLV 935



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 60/305 (19%), Positives = 122/305 (40%), Gaps = 37/305 (12%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +N +VD L K+G  ++       M E G+     T++++ D YC +    EA   F  
Sbjct: 595 FIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHE 654

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M   GV+      N+L+   C+ E    +A+     + +       SF  L++G+ K   
Sbjct: 655 MPSKGVQPHSFVYNALVHGCCK-EGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCK 713

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           ++EA++ F EM+ + +  P+HV  Y T +    +  +++EA    + M+  N       +
Sbjct: 714 IQEASQLFQEMIAK-QIMPDHV-TYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTY 771

Query: 293 SNALDILVKLNDSTHAVQLWDIMVG---------------------------------IG 319
           ++ +    KL  S+    L++ MV                                  +G
Sbjct: 772 TSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVG 831

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
             ++    +++ +I  LC  +D+    +  D+M   G  P     + +     +  ++ E
Sbjct: 832 KGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDE 891

Query: 380 VEKFF 384
             + F
Sbjct: 892 ATRVF 896


>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
 gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
          Length = 797

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 95/385 (24%), Positives = 167/385 (43%), Gaps = 25/385 (6%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGK-------NGRFEQMWNAVRVMKEDGVLSLPTFASI 153
           F     RG + +   +  ++D L K        G F+QM +  + +K D      T+  +
Sbjct: 226 FLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMID--KGVKPDN----DTYNCL 279

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL--NRVKK 211
              Y   GK+ E V   + MS HG++ D     SLL+ +C   N   R   FL  + ++K
Sbjct: 280 IHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLC--NNGRCREARFLFDSMIRK 337

Query: 212 IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD 271
            + P+   + IL+ G+  +G + E +     MVE    +P+H + +        +   +D
Sbjct: 338 GIKPNVAIYGILIHGYATKGALSEMHDLLNLMVEN-GLSPDHHI-FNIIFTAYAKKAMID 395

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA 331
           EA+     MK +   P +  +   +D L KL     AV  ++ M+  G  + PN+ ++N+
Sbjct: 396 EAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEG--VAPNIFVFNS 453

Query: 332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
           ++  LC  D  +    F+ +M+  G  PD + +N I   L    +V + ++    M +  
Sbjct: 454 LVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVG 513

Query: 392 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 451
            +P  ++  T I         + A +  + +L  G+ P E + N LL G    GR+ D  
Sbjct: 514 TRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAY 573

Query: 452 RFAEEMLNRRI----LIYEVTMHKL 472
               EML   I    + Y   +H L
Sbjct: 574 GVFREMLRNGITPGVVTYSTILHGL 598



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 88/391 (22%), Positives = 157/391 (40%), Gaps = 46/391 (11%)

Query: 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAV-MSF 170
           P  +++++    + GR E  +    ++ + G  ++      +    C A +  EA+ +  
Sbjct: 94  PCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLCEAMDILV 153

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK----KIVDPDGDSFAILLEG 226
             M   G   DVV+ N+LL   C  E +   ALE L+ +     +   P+  S+AI++ G
Sbjct: 154 KRMPELGCTPDVVSYNTLLKGFC-NEKRAEEALELLHMMADSQGRSCPPNVVSYAIVING 212

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD--------------- 271
           +  EG V++A   F EM++R    P +V+ Y T +  L + + VD               
Sbjct: 213 FFTEGQVDKAYNLFLEMMDR-GIQP-NVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVK 270

Query: 272 --------------------EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
                               E ++ L  M      P    + + L+ L        A  L
Sbjct: 271 PDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFL 330

Query: 312 WDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECL 371
           +D M+  G  + PN+ +Y  +I        +  +    + MV +G  PD   +N+IF   
Sbjct: 331 FDSMIRKG--IKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAY 388

Query: 372 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 431
            K   + E    F++M +    P  +N    I  L      + A+  +N ++  G+ P  
Sbjct: 389 AKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAPNI 448

Query: 432 ASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
              N L+ GL  + +    + F  EMLN+ I
Sbjct: 449 FVFNSLVYGLCTVDKWEKAKEFYFEMLNQGI 479



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 141/328 (42%), Gaps = 18/328 (5%)

Query: 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE------FLNRVKK- 211
           G+   D+A+  FD +  H     V+A N LL+A+ R   + S   E        NR+ + 
Sbjct: 26  GSLGLDDALKLFDGLLTHARPASVIAFNHLLTAVSRVSGRRSSTTESELVVSLFNRMIRE 85

Query: 212 ---IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
               V PD  +++IL+  + + G +E    TFG ++ +  W   +++  +  L  L   K
Sbjct: 86  CTIKVTPDPCTYSILIGCFCRMGRLEHGFATFG-LILKSGWRVNNIVINQ-LLKGLCDAK 143

Query: 269 QVDEALKFL-RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV-GIGFNLMPNL 326
           ++ EA+  L + M    C P +  ++  L        +  A++L  +M    G +  PN+
Sbjct: 144 RLCEAMDILVKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNV 203

Query: 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 386
           + Y  VI        VD  +  F +M+  G  P+ +TY  + + L K + V   E  F +
Sbjct: 204 VSYAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQ 263

Query: 387 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 446
           MI    +P        I   L   + +  + +   +  +G+ P   +   LL  L N GR
Sbjct: 264 MIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGR 323

Query: 447 LSDVRRFAEEMLNRRI----LIYEVTMH 470
             + R   + M+ + I     IY + +H
Sbjct: 324 CREARFLFDSMIRKGIKPNVAIYGILIH 351



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 69/324 (21%), Positives = 136/324 (41%), Gaps = 7/324 (2%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           +  G +   Y +  +++ L  NGR  +       M   G+  ++  +  +   Y   G  
Sbjct: 300 SAHGLKPDCYTYGSLLNYLCNNGRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKGAL 359

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAI 222
            E     ++M  +G+  D    N + +A  ++      A+   N++K+  + PD  ++  
Sbjct: 360 SEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKA-MIDEAMHIFNKMKQQGLSPDVVNYGA 418

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L++   K G V++A   F +M+   E    ++  + + +  L    + ++A +F   M  
Sbjct: 419 LIDALCKLGRVDDAVLKFNQMMN--EGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLN 476

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
           +   P + FF+  L  L        A +L D+M  +G    P +I Y  +IG  C    +
Sbjct: 477 QGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTR--PGVISYTTLIGGHCLVGRI 534

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
           D   +  D M+  G  PD  TYN +     +  R+ +    F EM++N   P  +  +T 
Sbjct: 535 DEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTI 594

Query: 403 ITMLLDADEPEIAIEIWNYILENG 426
           +  L        A E++  ++ +G
Sbjct: 595 LHGLFTTRRFSEAKELYLNMITSG 618



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 69/301 (22%), Positives = 123/301 (40%), Gaps = 13/301 (4%)

Query: 137 RVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC 193
           R+++E  +   P   T++ +   +C  G+ +    +F ++   G   + + +N LL  +C
Sbjct: 81  RMIRECTIKVTPDPCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLC 140

Query: 194 RQENQTSRALEFLNRVKKI----VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE-RFE 248
               +   A++ L  VK++      PD  S+  LL+G+  E   EEA +    M + +  
Sbjct: 141 -DAKRLCEAMDIL--VKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGR 197

Query: 249 WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHA 308
             P +V++Y   +       QVD+A      M      P +  ++  +D L K      A
Sbjct: 198 SCPPNVVSYAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRA 257

Query: 309 VQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIF 368
             ++  M+  G  + P+   YN +I    +      V R  ++M  HG  PD  TY  + 
Sbjct: 258 EGVFQQMIDKG--VKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLL 315

Query: 369 ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 428
             L  N R  E    F  MI+   +P        I             ++ N ++ENG+ 
Sbjct: 316 NYLCNNGRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLS 375

Query: 429 P 429
           P
Sbjct: 376 P 376



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 88/375 (23%), Positives = 144/375 (38%), Gaps = 47/375 (12%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           + Q LSP    +  ++D L K GR +        M  +GV  ++  F S+    C   K+
Sbjct: 405 KQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKW 464

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICR--QENQTSRALEFLNRVKKIVDPDGDSFA 221
           ++A   +  M   G+  DVV  N++L  +C   Q  +  R ++ + RV     P   S+ 
Sbjct: 465 EKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVG--TRPGVISYT 522

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L+ G    G ++EA K+   M+      P+    Y T L    R  ++D+A    R M 
Sbjct: 523 TLIGGHCLVGRIDEAAKSLDVMLS-VGLKPDE-WTYNTLLHGYCRAGRIDDAYGVFREML 580

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
                P +  +S  L  L      + A +L+  M+  G     N+ +YN ++  L  N+ 
Sbjct: 581 RNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQW--NIWIYNIILNGLSKNNC 638

Query: 342 VDNVFRFFDQMVF-----------------------------------HGAFPDSLTYNM 366
           VD  F+ F  +                                     +G  PD  TY +
Sbjct: 639 VDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCL 698

Query: 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 426
           I E LI+   + E +  F  M K+   P        +  LL   +   A   +   L+  
Sbjct: 699 IAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLNALVRRLLHRGDITRA-GAYLCKLDEK 757

Query: 427 ILPLEASANELLVGL 441
              LEAS   +L+ L
Sbjct: 758 NFSLEASTTAMLISL 772


>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05670, mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 93/425 (21%), Positives = 188/425 (44%), Gaps = 10/425 (2%)

Query: 54  RIICEILAHASSDDIESALACTGIIPTPDLVHEVL-QLSYDSPSSAVDFFRWAGRGQRLS 112
           +++ EI   + +  +   L   G++ T D  +  L +++ +S    +    +   G   +
Sbjct: 198 QVLVEIGHLSEARKLLDKLLSYGLVVTVDSCNAFLSRIANNSEGIEMAIKVFCEYGISWN 257

Query: 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMS 169
             ++N+++  L + G+ ++    +  M+ D   S P   +++++ D YC  G+  +A+  
Sbjct: 258 TTSYNIIIYSLCRLGKVKEAHRLL--MQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKL 315

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK 229
            D M + G++ +    NS++  +C+              + + + PD   +  L+ G+ K
Sbjct: 316 MDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFK 375

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
            G+V  ANK F EM+ + + +P+++  Y T +    +G +V E       M      P  
Sbjct: 376 LGHVRTANKWFDEMLSK-KISPDYI-TYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDE 433

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
             ++  +D+  K  +  +A  L + MV +G  + PN++ Y A+I  LC + ++D      
Sbjct: 434 VTYTTLIDVYCKAGEMVNAFSLHNEMVQMG--MTPNIVTYGALIDGLCKHGELDTANELL 491

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 409
           D+M   G   +   YN +   + K   + +  K   EM      P  +   T I      
Sbjct: 492 DEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRL 551

Query: 410 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTM 469
            + + A ++   +L+ G+ P   + N L+ G   LG L D  R    ML + I+   +T 
Sbjct: 552 GDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITY 611

Query: 470 HKLKK 474
           + L K
Sbjct: 612 NTLMK 616



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 73/330 (22%), Positives = 140/330 (42%), Gaps = 10/330 (3%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F   F      G   EA    D +  +G+   V + N+ LS I         A++     
Sbjct: 193 FDIFFQVLVEIGHLSEARKLLDKLLSYGLVVTVDSCNAFLSRIANNSEGIEMAIKVFCEY 252

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
              +  +  S+ I++    + G V+EA++   +M   F  +   V++Y T +       +
Sbjct: 253 G--ISWNTTSYNIIIYSLCRLGKVKEAHRLLMQM--DFRSSTPDVVSYSTVIDGYCHLGE 308

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY 329
           + +ALK +  M+ +   P    +++ + +L K+  S  A ++   M+     ++P+ ++Y
Sbjct: 309 LKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQ--KIIPDNVVY 366

Query: 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389
             +I        V    ++FD+M+     PD +TY  + +   +  +V E +  FHEMI 
Sbjct: 367 TTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMIS 426

Query: 390 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 449
              +P  +   T I +   A E   A  + N +++ G+ P   +   L+ GL   G L  
Sbjct: 427 RGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDT 486

Query: 450 VRRFAEEM----LNRRILIYEVTMHKLKKA 475
                +EM    L   + IY   ++ + KA
Sbjct: 487 ANELLDEMRKKGLQLNVCIYNSMVNGICKA 516



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/304 (20%), Positives = 123/304 (40%), Gaps = 46/304 (15%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F     RG +     +  ++DV  K G     ++    M + G+  ++ T+ ++ D  C 
Sbjct: 421 FHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCK 480

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGD 218
            G+ D A    D M   G++ +V   NS+++ IC+  N   +A++ +  ++   +DPD  
Sbjct: 481 HGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGN-IEQAIKLMKEMEVAGIDPDAI 539

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVER----------------------------FEWN 250
           ++  +++ + + G++++A+K   EM++R                              W 
Sbjct: 540 TYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWM 599

Query: 251 PEH-----VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS 305
            E       + Y T +        ++   K  + M+ +   P     SN  +IL+K +  
Sbjct: 600 LEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPD----SNTYNILIKGHCK 655

Query: 306 THAVQ----LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS 361
              ++    L+  M+  G+  +P +  YNA+I               F++M  HG   D 
Sbjct: 656 ARNLKEAWFLYKEMIEKGY--VPTVTSYNALIKRFYKKRKFXEARELFEEMRGHGLVADG 713

Query: 362 LTYN 365
             YN
Sbjct: 714 EIYN 717



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 70/391 (17%), Positives = 160/391 (40%), Gaps = 15/391 (3%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G + + Y +N ++ +L K G+  +    +R M    ++     + ++   +   G    
Sbjct: 322 KGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRT 381

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE----FLNRVKKIVDPDGDSFA 221
           A   FD M    +  D +   +L+        Q  + +E    F   + + + PD  ++ 
Sbjct: 382 ANKWFDEMLSKKISPDYITYTTLIQGF----GQGGKVIEPQNLFHEMISRGLKPDEVTYT 437

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L++ + K G +  A     EMV+     P +++ Y   +  L +  ++D A + L  M+
Sbjct: 438 TLIDVYCKAGEMVNAFSLHNEMVQ-MGMTP-NIVTYGALIDGLCKHGELDTANELLDEMR 495

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
            +     +  +++ ++ + K  +   A++L   M   G +  P+ I Y  VI   C   D
Sbjct: 496 KKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGID--PDAITYTTVIDAYCRLGD 553

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
           +D   +   +M+  G  P  +T+N++         + + ++    M++    P  +   T
Sbjct: 554 IDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNT 613

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461
            +      +      +I+  +   G+ P   + N L+ G      L +     +EM+ + 
Sbjct: 614 LMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKG 673

Query: 462 ILIYEVTMHKLKKAFYNESR--SMRDIFDSL 490
            +    + + L K FY + +    R++F+ +
Sbjct: 674 YVPTVTSYNALIKRFYKKRKFXEARELFEEM 704


>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
 gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
          Length = 758

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 111/506 (21%), Positives = 200/506 (39%), Gaps = 73/506 (14%)

Query: 27  PTSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHE 86
           P +  P    R   P  L    IS   R++    A     D E+AL          +++ 
Sbjct: 31  PPALRPQPRRRGHRPAPLRVYAISDQDRLLA---ALREQSDPEAALR---------MLNS 78

Query: 87  VLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VL 145
            L     +PSSAV                +  +V  LG  G F+ M   VR M+ +G  +
Sbjct: 79  ALAREDFAPSSAV----------------YEEIVQKLGTAGAFDLMEGLVREMRREGHQV 122

Query: 146 SLPTFASIFDSYCGAGKYDEAV-------------------------------------- 167
                 S  +SY    ++D+AV                                      
Sbjct: 123 RAVVVRSFVESYARLRRFDDAVDLVLNQLDNDTFGVQADTVVFNHLLNVLVEGSKLKLLE 182

Query: 168 MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW 227
             ++ M+  G++ DVV +N+L+ A+CR     +  L         V PD  +F  L++G+
Sbjct: 183 SVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGF 242

Query: 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
            +EG++E A +   +M+E    +P  V      +    +  +V++AL +++    +   P
Sbjct: 243 IEEGSIEAALRVKAKMMEA-GCSPTGV-TVNVLINGYCKMGRVEDALGYIQQEIADGFEP 300

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFR 347
               ++  +  L +    +HA+++ D+M+  G +  P++  YN VI  L  N ++D    
Sbjct: 301 DQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHD--PDVFTYNTVINCLSKNGELDEAKG 358

Query: 348 FFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 407
             +QMV  G  PD+ T+N +   L    R+ E      E+      P        I  L 
Sbjct: 359 IVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALC 418

Query: 408 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEV 467
              +P + I ++  +  +G  P E + N L+  L ++G+L +      EM +       V
Sbjct: 419 KVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTV 478

Query: 468 TMHKLKKAFYNESR--SMRDIFDSLE 491
           T + +  A   + R     ++FD ++
Sbjct: 479 TYNTIIDALCKKMRIEEAEEVFDQMD 504



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/335 (23%), Positives = 145/335 (43%), Gaps = 6/335 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN- 207
           T   + + YC  G+ ++A+         G E D V  N+ +  +C Q    S AL+ ++ 
Sbjct: 269 TVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLC-QNGHVSHALKVMDL 327

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            +++  DPD  ++  ++    K G ++EA     +MV+R    P+    + T ++ L   
Sbjct: 328 MLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCL-PD-TTTFNTLIVALSSQ 385

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
            +++EAL   R +  +   P +  F+  ++ L K+ D    ++L++ M   G    P+ +
Sbjct: 386 NRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCT--PDEV 443

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            YN +I  LC+   + N     ++M  +G    ++TYN I + L K  R+ E E+ F +M
Sbjct: 444 TYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQM 503

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
                  + +   T I  L  A   + A E+   +++ G+ P   + N +L      G +
Sbjct: 504 DAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNI 563

Query: 448 SDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 482
                  E M      I  VT   L        R+
Sbjct: 564 KKAADILETMTANGFEIDVVTYGTLINGLCKAGRT 598



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 89/394 (22%), Positives = 161/394 (40%), Gaps = 15/394 (3%)

Query: 104 WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE---DGVL-SLPTFASIFDSYCG 159
             GRG +      N ++  L    R  Q+  AV +++E    GV     TF ++   +  
Sbjct: 188 MTGRGIQPDVVTLNTLIKALC---RAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIE 244

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGD 218
            G  + A+     M   G     V VN L++  C+   +   AL ++ + +    +PD  
Sbjct: 245 EGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKM-GRVEDALGYIQQEIADGFEPDQV 303

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++   + G  + G+V  A K    M++  E +   V  Y T +  L +  ++DEA   + 
Sbjct: 304 TYNTFVHGLCQNGHVSHALKVMDLMLQ--EGHDPDVFTYNTVINCLSKNGELDEAKGIVN 361

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            M    C P    F+  +  L   N    A+ L   +   G  L P++  +N +I  LC 
Sbjct: 362 QMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKG--LSPDVYTFNILINALCK 419

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
             D     R F++M   G  PD +TYN++ + L    ++       +EM  N    + + 
Sbjct: 420 VGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVT 479

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
             T I  L      E A E+++ +   GI     + N L+ GL    R+ D     E+M+
Sbjct: 480 YNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMV 539

Query: 459 NRRILIYEVTMHKLKKAFYNES--RSMRDIFDSL 490
              +    +T + +   +  +   +   DI +++
Sbjct: 540 KEGLQPNNITYNSILTHYCKQGNIKKAADILETM 573



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/344 (23%), Positives = 142/344 (41%), Gaps = 7/344 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N  V  L +NG        + +M ++G    + T+ ++ +     G+ DEA    + M 
Sbjct: 305 YNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMV 364

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNV 233
             G   D    N+L+ A+  Q N+   AL+    +  K + PD  +F IL+    K G+ 
Sbjct: 365 DRGCLPDTTTFNTLIVALSSQ-NRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDP 423

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
               + F EM +     P+ V  Y   +  L    ++  AL  L  M+   C  +   ++
Sbjct: 424 HLGIRLFEEM-KSSGCTPDEV-TYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYN 481

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +D L K      A +++D M   G +   + + +N +I  LC    +D+     +QMV
Sbjct: 482 TIIDALCKKMRIEEAEEVFDQMDAQGIS--RSAVTFNTLIDGLCKAKRIDDATELIEQMV 539

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G  P+++TYN I     K   + +       M  N ++   +   T I  L  A   +
Sbjct: 540 KEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQ 599

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           +A+++   +   GI P   + N ++  L     L D      EM
Sbjct: 600 VALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLFREM 643



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 80/351 (22%), Positives = 142/351 (40%), Gaps = 10/351 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +N +++ L KNG  ++    V  M + G L    TF ++  +     + +EA+     
Sbjct: 338 FTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARE 397

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           +++ G+  DV   N L++A+C+  +       F         PD  ++ IL++     G 
Sbjct: 398 LTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGK 457

Query: 233 VEEANKTFGEMVERFEWN--PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           +  A     EM    E N  P   + Y T +  L +  +++EA +    M  +    +  
Sbjct: 458 LGNALDLLNEM----ESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAV 513

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
            F+  +D L K      A +L + MV  G  L PN I YN+++   C   ++       +
Sbjct: 514 TFNTLIDGLCKAKRIDDATELIEQMVKEG--LQPNNITYNSILTHYCKQGNIKKAADILE 571

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
            M  +G   D +TY  +   L K  R     K    M     +PTP      I  L   +
Sbjct: 572 TMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRN 631

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGL-RNLGRLSDVRRFAEEMLNR 460
               A+ ++  + E G  P   +   +   L R  G + +   F  EM+N+
Sbjct: 632 NLRDALNLFREMTEVGEPPDALTYKIVFRSLCRGGGPIKEAFDFLVEMVNK 682


>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
 gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats [Arabidopsis thaliana]
 gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 632

 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/352 (22%), Positives = 159/352 (45%), Gaps = 5/352 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDE 165
           RG +     +  +V+ L K G  +   + ++ M++  +   +  + +I D  C     D+
Sbjct: 217 RGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDD 276

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A+  F  M   G+  DV   +SL+S +C     +  +    + +++ ++P+  +F+ L++
Sbjct: 277 ALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALID 336

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
            + KEG + EA K + EM++R   +P+ +  Y + +       ++DEA     +M  ++C
Sbjct: 337 AFVKEGKLVEAEKLYDEMIKR-SIDPD-IFTYSSLINGFCMHDRLDEAKHMFELMISKDC 394

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
           FP +  +S  +    K       ++L+  M   G  L+ N + Y  +I       D DN 
Sbjct: 395 FPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRG--LVGNTVTYTTLIHGFFQARDCDNA 452

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
              F QMV  G  P+ LTYN++ + L KN ++ +    F  + ++  +P        I  
Sbjct: 453 QMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEG 512

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           +  A + E   E++  +   G+ P   + N ++ G    G   +     ++M
Sbjct: 513 MCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKM 564



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 137/301 (45%), Gaps = 6/301 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF ++        K  EAV   D M   G + D+V   ++++ +C++      AL  L +
Sbjct: 190 TFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKR-GDIDLALSLLKK 248

Query: 209 VKK-IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           ++K  ++ D   +  +++G  K  ++++A   F EM  +    P+ V  Y + +  L   
Sbjct: 249 MEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNK-GIRPD-VFTYSSLISCLCNY 306

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
            +  +A + L  M      P +  FS  +D  VK      A +L+D M+    +  P++ 
Sbjct: 307 GRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSID--PDIF 364

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            Y+++I   C +D +D     F+ M+    FP+ +TY+ + +   K KRV E  + F EM
Sbjct: 365 TYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREM 424

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
            +       +   T I     A + + A  ++  ++  G+ P   + N LL GL   G+L
Sbjct: 425 SQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKL 484

Query: 448 S 448
           +
Sbjct: 485 A 485



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 73/337 (21%), Positives = 143/337 (42%), Gaps = 6/337 (1%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  F  +  +     K++  +   + M   G+  D+   +  ++  CR+ +Q S AL  
Sbjct: 82  SIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRR-SQLSLALAV 140

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L ++ K+  +PD  + + LL G+     + +A     +MVE   + P+    + T +  L
Sbjct: 141 LAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVE-MGYKPD-TFTFTTLIHGL 198

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
               +  EA+  +  M    C P L  +   ++ L K  D   A+ L   M      +  
Sbjct: 199 FLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEK--GKIEA 256

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           ++++YN +I  LC    +D+    F +M   G  PD  TY+ +  CL    R  +  +  
Sbjct: 257 DVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLL 316

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
            +MI+ +  P  +  +  I   +   +   A ++++ +++  I P   + + L+ G    
Sbjct: 317 SDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMH 376

Query: 445 GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
            RL + +   E M+++      VT   L K F    R
Sbjct: 377 DRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKR 413



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 71/348 (20%), Positives = 144/348 (41%), Gaps = 6/348 (1%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCG 159
           F     +G R   + ++ ++  L   GR+      +  M E  +  ++ TF+++ D++  
Sbjct: 281 FTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVK 340

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
            GK  EA   +D M    ++ D+   +SL++  C  +        F   + K   P+  +
Sbjct: 341 EGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVT 400

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           ++ L++G+ K   VEE  + F EM +R      + + Y T +    + +  D A    + 
Sbjct: 401 YSTLIKGFCKAKRVEEGMELFREMSQRGLVG--NTVTYTTLIHGFFQARDCDNAQMVFKQ 458

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
           M      P +  ++  LD L K      A+ +++ +      + P++  YN +I  +C  
Sbjct: 459 MVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRS--TMEPDIYTYNIMIEGMCKA 516

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
             V++ +  F  +   G  P+ + YN +     +     E +    +M ++   P     
Sbjct: 517 GKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTY 576

Query: 400 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
            T I   L   + E + E+   +   G    +AS   L+  + + GRL
Sbjct: 577 NTLIRARLRDGDREASAELIKEMRSCGFAG-DASTIGLVTNMLHDGRL 623



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/295 (19%), Positives = 109/295 (36%), Gaps = 70/295 (23%)

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM--VGIGFNLM--- 323
           +VD+A+     M     FP++  F+  L  + K+N     + L + M  +GI  +L    
Sbjct: 63  KVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYS 122

Query: 324 ----------------------------PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
                                       P+++  ++++   C++  + +     DQMV  
Sbjct: 123 IFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEM 182

Query: 356 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 415
           G  PD+ T+  +   L  + +  E      +M++   QP  +   T +  L    + ++A
Sbjct: 183 GYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLA 242

Query: 416 IE---------------IWNYILEN--------------------GILPLEASANELLVG 440
           +                I+N I++                     GI P   + + L+  
Sbjct: 243 LSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISC 302

Query: 441 LRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLERR 493
           L N GR SD  R   +M+ R+I    VT   L  AF  E +      ++D + +R
Sbjct: 303 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR 357


>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
 gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
          Length = 460

 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/355 (23%), Positives = 157/355 (44%), Gaps = 5/355 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G + +  A+N ++D L K+    +  +    M ++G+   + T++SI   +C  G+ +E
Sbjct: 74  KGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGRVNE 133

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A   F  M    V  + V    L+  +C++   +   L F    +K ++PD  ++  L++
Sbjct: 134 ATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVD 193

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+     ++EA K F  +++R    P +V +Y   +    +  ++DEA   L  M  ++ 
Sbjct: 194 GYCSRSQMDEAQKLF-NIMDRKGCAP-NVRSYNILINGHCKSGRIDEAKGLLAEMSHKSL 251

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P +  +S  +    ++     A +L   M   G  L+PNLI Y+ V+  LC +  +D  
Sbjct: 252 TPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYG--LLPNLITYSIVLDGLCKHGHLDEA 309

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
           F     M      P+   Y ++ E +    ++    + F  +     QPT +     I+ 
Sbjct: 310 FELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISG 369

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           LL       A E++  +  NG LP   + N ++ G    G   +  R  EEM+ +
Sbjct: 370 LLKGGLSNEACELFREMAVNGCLPNSCTYNVIIQGFLRNGDTPNAVRLIEEMVGK 424



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/350 (24%), Positives = 158/350 (45%), Gaps = 12/350 (3%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           +L TF ++    C   K  +AV  FD M   G E DV+  +++++ +C+  N T+ AL+ 
Sbjct: 9   TLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGN-TTMALQL 67

Query: 206 LNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L +++ K   P+  ++  +++   K+  V EA   F EMV+  E  P  V  Y + L   
Sbjct: 68  LKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVK--EGIPPDVFTYSSILHGF 125

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
               +V+EA    + M   N  P    F+  +D L K    + A  +++ M   G  L P
Sbjct: 126 CNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKG--LEP 183

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           ++  YNA++   C+   +D   + F+ M   G  P+  +YN++     K+ R+ E +   
Sbjct: 184 DVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLL 243

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
            EM      P     +T +        P+ A E+   +   G+LP   + + +L GL   
Sbjct: 244 AEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKH 303

Query: 445 GRLSD----VRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSL 490
           G L +    ++   E  +   I IY + +  +    + +  + R++F +L
Sbjct: 304 GHLDEAFELLKAMQESKIEPNIFIYTILIEGM--CTFGKLEAARELFSNL 351



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 120/290 (41%), Gaps = 42/290 (14%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            + +++D L K     + W     M E G+   + T+ ++ D YC   + DEA   F++M
Sbjct: 152 TFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIM 211

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
              G   +V + N L++  C+   +   A   L  +  K + PD  +++ L+ G+ + G 
Sbjct: 212 DRKGCAPNVRSYNILINGHCKS-GRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGR 270

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE----NCF-- 286
            +EA +   EM   +   P +++ Y   L  L +   +DEA + L+ M+      N F  
Sbjct: 271 PQEAQELLKEMCS-YGLLP-NLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIY 328

Query: 287 -----------------------------PTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317
                                        PT+  ++  +  L+K   S  A +L+  M  
Sbjct: 329 TILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACELFREMAV 388

Query: 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMI 367
            G   +PN   YN +I     N D  N  R  ++MV  G   DS T+ M+
Sbjct: 389 NG--CLPNSCTYNVIIQGFLRNGDTPNAVRLIEEMVGKGFSADSSTFRML 436



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 93/209 (44%), Gaps = 4/209 (1%)

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346
           PTL  F+  L  L        AV+L+D MV +G    P++I Y+ +I  LC   +     
Sbjct: 8   PTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHE--PDVITYSTIINGLCKMGNTTMAL 65

Query: 347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406
           +   +M   G  P+ + YN I + L K++ V E   FF EM+K    P     ++ +   
Sbjct: 66  QLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGF 125

Query: 407 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYE 466
            +      A  ++  ++E  ++P + +   L+ GL     +S+     E M  + +    
Sbjct: 126 CNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDV 185

Query: 467 VTMHKLKKAFYNESR--SMRDIFDSLERR 493
            T + L   + + S+    + +F+ ++R+
Sbjct: 186 YTYNALVDGYCSRSQMDEAQKLFNIMDRK 214



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 72/149 (48%)

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
             L P L+ +N ++  LC+   + +  + FD+MV  G  PD +TY+ I   L K      
Sbjct: 4   LGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTM 63

Query: 380 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 439
             +   +M +   +P  +   T I  L        A++ ++ +++ GI P   + + +L 
Sbjct: 64  ALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILH 123

Query: 440 GLRNLGRLSDVRRFAEEMLNRRILIYEVT 468
           G  NLGR+++     ++M+ R ++  +VT
Sbjct: 124 GFCNLGRVNEATSLFKQMVERNVIPNKVT 152


>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
 gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
          Length = 543

 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 163/381 (42%), Gaps = 13/381 (3%)

Query: 67  DIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSP----YAWNLMVDV 122
           + E+ALA       P+ V  VLQ+  D   S   FFRW  R  R       +  N ++  
Sbjct: 20  EAEAALAKYSRNLVPNTVGRVLQVIKDVDVSLF-FFRWVTRSHRGESIHNNFTCNCLLRT 78

Query: 123 LGKNGRFEQMWNAVR--VMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQ 180
           L K  R  Q +   R  ++ +    +  T+ ++   +C AG  + A      M   G   
Sbjct: 79  LVKARRHHQAYQIFRDELLGQHCDTNHITYNTLIGGFCKAGDMERAFQLLAEMKERGHSP 138

Query: 181 DVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTF 240
           DVV  +S++ A+C   N  SRA+++  R      PD   F IL+ G  K   + EA +  
Sbjct: 139 DVVTHSSIVQALCNTGN-LSRAMQYF-RESVECAPDSVLFNILVHGLCKANQLSEARQMI 196

Query: 241 GEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV 300
            EM ER    P+ V+ Y + +  L +  +++EA + L  M      P L  ++  +    
Sbjct: 197 EEMSER-GIVPD-VVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYC 254

Query: 301 KLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPD 360
           K   +  A QL + M+  G +  P+++ +N++I   C    +D        M      P+
Sbjct: 255 KTGCTGLAHQLIERMIQSGTH--PDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPN 312

Query: 361 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 420
            +TYN++   L    R +E  +   EM      P  +   + I +     + E A +I N
Sbjct: 313 LVTYNVLISGLCDAGRANEACELLSEMDGRGILPDIITYNSLIGIFCRNFQIEQAFQIQN 372

Query: 421 YILENGILPLEASANELLVGL 441
            ++E G++P   S   L V L
Sbjct: 373 LMVERGVIPDGISYCTLAVAL 393



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 135/334 (40%), Gaps = 43/334 (12%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F  +    C A +  EA    + MS  G+  DVV  NSL+  +C+              V
Sbjct: 176 FNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMV 235

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH--VLAYETFLITLIRG 267
           K+ V P+  ++  L+ G+ K G    A+    +++ER   +  H  V+ + + +    + 
Sbjct: 236 KRKVRPNLVTYNTLIYGYCKTGCTGLAH----QLIERMIQSGTHPDVVTFNSLISGFCQK 291

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
            ++D+A + L +MK   C P L  ++  +  L     +  A +L   M G G  ++P++I
Sbjct: 292 SKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRG--ILPDII 349

Query: 328 MYNAVIGLLCNNDDV-----------------------------------DNVFRFFDQM 352
            YN++IG+ C N  +                                   D  F   D M
Sbjct: 350 TYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYCTLAVALLKSERFDEAFALLDNM 409

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
              GA P+  T+N + E L  ++R+ E       M +    P        +T L  A   
Sbjct: 410 FDAGAIPNLFTFNSLMEGLCCSRRLDEARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRV 469

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGR 446
           + A E+   ++  GI PL +S+  ++  L   G+
Sbjct: 470 DDAKEVLVMMVSEGIQPLVSSSGTIVHTLAREGK 503



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 137/310 (44%), Gaps = 7/310 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++D L K+ R E+    +  M +  V  +L T+ ++   YC  G    A    + M 
Sbjct: 211 YNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMI 270

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNV 233
             G   DVV  NSL+S  C Q+++  +A E L+ +KK +  P+  ++ +L+ G    G  
Sbjct: 271 QSGTHPDVVTFNSLISGFC-QKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRA 329

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            EA +   EM  R    P+ ++ Y + +    R  Q+++A +   +M      P    + 
Sbjct: 330 NEACELLSEMDGRGIL-PD-IITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYC 387

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
                L+K      A  L D M   G   +PNL  +N+++  LC +  +D        M 
Sbjct: 388 TLAVALLKSERFDEAFALLDNMFDAG--AIPNLFTFNSLMEGLCCSRRLDEARHLLAVMR 445

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G  P + TY ++   L K  RV + ++    M+    QP   +  T +  L    + +
Sbjct: 446 RVGCDPAASTYEVLVTGLCKAGRVDDAKEVLVMMVSEGIQPLVSSSGTIVHTLAREGKQD 505

Query: 414 IAIEIWNYIL 423
           +A+  ++ ++
Sbjct: 506 LALHYFDQVV 515



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 94/210 (44%), Gaps = 10/210 (4%)

Query: 268 KQVDEALKFLR----VMKGENCFPTLKFFSNAL-DILVKLNDSTHAVQLWDIMVGIGFNL 322
           K VD +L F R      +GE+      F  N L   LVK      A Q++   + +G + 
Sbjct: 45  KDVDVSLFFFRWVTRSHRGESIHNN--FTCNCLLRTLVKARRHHQAYQIFRDEL-LGQHC 101

Query: 323 MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
             N I YN +IG  C   D++  F+   +M   G  PD +T++ I + L     +    +
Sbjct: 102 DTNHITYNTLIGGFCKAGDMERAFQLLAEMKERGHSPDVVTHSSIVQALCNTGNLSRAMQ 161

Query: 383 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 442
           +F E +  E  P  +     +  L  A++   A ++   + E GI+P   + N L+ GL 
Sbjct: 162 YFRESV--ECAPDSVLFNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLC 219

Query: 443 NLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
              R+ + R+  E M+ R++    VT + L
Sbjct: 220 KSYRMEEARQLLETMVKRKVRPNLVTYNTL 249


>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/340 (22%), Positives = 160/340 (47%), Gaps = 6/340 (1%)

Query: 92  YDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPT 149
           ++  S AV    R   RG +   + +  +V+ L K G  +   + ++ M++  +  ++  
Sbjct: 199 HNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVI 258

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           + +I D  C     D+A   F+ M   G++ DV   NSL+S +C     +  +    + +
Sbjct: 259 YNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMI 318

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
           ++ ++P+  +F  L++ + KEG + EA K F EM++R   +P +++ Y + +       +
Sbjct: 319 ERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQR-SIDP-NIVTYNSLINGFCMHDR 376

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY 329
           +DEA +   +M  ++C P +  ++  +    K       ++L+  M   G  L+ N + Y
Sbjct: 377 LDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRG--LVGNTVTY 434

Query: 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389
           N +I  L    D D   + F +MV  G  PD +TY+++ + L K  ++ +    F  + K
Sbjct: 435 NTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQK 494

Query: 390 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
           ++ +P        I  +  A + E   +++  +   G+ P
Sbjct: 495 SKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKP 534



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 147/337 (43%), Gaps = 6/337 (1%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  F+ +  +     K+D  +   + M   G+  +    + LL+  CR+ +Q   AL  
Sbjct: 80  SIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILLNCFCRR-SQLPLALAV 138

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L ++ K+  +PD  + + LL G+     + EA     +MVE   + P+ V  + T +  L
Sbjct: 139 LGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVE-MGYKPDTV-TFNTLIHGL 196

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
               +  EA+  +  M    C P L  +   ++ L K  D   A+ L   M      +  
Sbjct: 197 FLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEK--GKIEA 254

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           N+++YN +I  LC    +D+ F  F++M   G  PD  TYN +  CL    R  +  +  
Sbjct: 255 NVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLL 314

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
            +MI+ +  P  +   + I       +   A ++++ +++  I P   + N L+ G    
Sbjct: 315 SDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMH 374

Query: 445 GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
            RL + ++    M+++  L   VT + L K F    R
Sbjct: 375 DRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKR 411



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 157/350 (44%), Gaps = 14/350 (4%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T +S+ + YC   +  EAV   D M   G + D V  N+L+  +    N+ S A+  ++R
Sbjct: 153 TLSSLLNGYCHGKRISEAVALVDQMVEMGYKPDTVTFNTLIHGLFLH-NKASEAVALIDR 211

Query: 209 -VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE-RFEWNPEHVLAYETFLITLIR 266
            V +   PD  ++  ++ G  K G+++ A     +M + + E N   V+ Y T +  L +
Sbjct: 212 MVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEAN---VVIYNTIIDGLCK 268

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNL 326
            K +D+A      M+ +   P +  +++ +  L      + A +L   M+    N  PN+
Sbjct: 269 YKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKIN--PNV 326

Query: 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 386
           + +N++I        +    + FD+M+     P+ +TYN +      + R+ E ++ F  
Sbjct: 327 VTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTL 386

Query: 387 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 446
           M+  +  P  +   T I     A   E  +E++  + + G++    + N L+ GL   G 
Sbjct: 387 MVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGD 446

Query: 447 LSDVRRFAEEMLNRR----ILIYEVTMHKLKKAFYNESRSMRDIFDSLER 492
               ++  ++M++      I+ Y + +  L K  Y +      +F+ L++
Sbjct: 447 CDMAQKIFKKMVSDGVPPDIITYSILLDGLCK--YGKLEKALVVFEYLQK 494



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 142/331 (42%), Gaps = 6/331 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T++ + + +C   +   A+     M   G E D+V ++SLL+  C  + + S A+  +++
Sbjct: 118 TYSILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGK-RISEAVALVDQ 176

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           + ++   PD  +F  L+ G        EA      MV R    P+ +  Y T +  L + 
Sbjct: 177 MVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVAR-GCQPD-LFTYGTVVNGLCKR 234

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
             +D AL  L+ M+       +  ++  +D L K      A  L++ M   G    P++ 
Sbjct: 235 GDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIK--PDVF 292

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            YN++I  LCN     +  R    M+     P+ +T+N + +   K  ++ E EK F EM
Sbjct: 293 TYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEM 352

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
           I+    P  +   + I      D  + A +I+  ++    LP   + N L+ G     R+
Sbjct: 353 IQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRV 412

Query: 448 SDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 478
            +      EM  R ++   VT + L +  + 
Sbjct: 413 EEGMELFREMSQRGLVGNTVTYNTLIQGLFQ 443



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 132/353 (37%), Gaps = 37/353 (10%)

Query: 92  YDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPT 149
           Y     A D F +   +G +   + +N ++  L   GR+      +  M E  +  ++ T
Sbjct: 269 YKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVT 328

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F S+ D++   GK  EA   FD M    ++ ++V  NSL++  C  +        F   V
Sbjct: 329 FNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMV 388

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
            K   PD  ++  L++G+ K   VEE  + F EM +R      + + Y T +  L +   
Sbjct: 389 SKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVG--NTVTYNTLIQGLFQAGD 446

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL------------------ 311
            D A K  + M  +   P +  +S  LD L K      A+ +                  
Sbjct: 447 CDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNI 506

Query: 312 --------------WDIMVGIGF-NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG 356
                         WD+   +    + PN+I+Y  +I   C     +     F +M   G
Sbjct: 507 MIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDG 566

Query: 357 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 409
             PDS  YN +    +++       +   EM    +       +  I ML D 
Sbjct: 567 TLPDSGCYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVINMLHDG 619



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/295 (20%), Positives = 105/295 (35%), Gaps = 70/295 (23%)

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG--------- 319
           ++D+A+     M     FP++  FS  L  + K+N     + L + M  +G         
Sbjct: 61  KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYS 120

Query: 320 ------------------------FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
                                       P+++  ++++   C+   +       DQMV  
Sbjct: 121 ILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEM 180

Query: 356 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 415
           G  PD++T+N +   L  + +  E       M+    QP      T +  L    + ++A
Sbjct: 181 GYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLA 240

Query: 416 IE---------------IWNYILEN--------------------GILPLEASANELLVG 440
           +                I+N I++                     GI P   + N L+  
Sbjct: 241 LSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISC 300

Query: 441 LRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSM--RDIFDSLERR 493
           L N GR SD  R   +M+ R+I    VT + L  AF  E + +    +FD + +R
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQR 355


>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
 gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
          Length = 1056

 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 166/374 (44%), Gaps = 12/374 (3%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G R +   ++ +VD L K GR E     +R M++ G L    T+ ++ D +    +  EA
Sbjct: 573 GCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREA 632

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLE 225
           V     M   G    VV   +L   +CR   +   A+E L+ +  +   P+  +++ +++
Sbjct: 633 VGLLREMLEAGFHPSVVTYTTLCHGLCRS-GRFDEAVEILDYMAARGCAPNAITYSSIVD 691

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G  K G V EA   F +M  R E    HV+AY   +  L +  ++DEA +FL  M     
Sbjct: 692 GLCKAGRVTEALGYFEKMA-RDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGR 750

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P +  FS  ++ L         ++L+  M   G     ++  YNA+I   C   +    
Sbjct: 751 IPDVVTFSILINGLCDAGRIDTGLELFCGMAERGCK--ADIYAYNAMINAYCLKGEFSAA 808

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
           +   ++M  HG   +++T+ ++ + L  N R+ E   +FH + ++       N  T IT 
Sbjct: 809 YALLEEMKTHGIAKNTVTHGIVIKALCGNDRIDEAVSYFHSIPEDCRDEISYN--TLITS 866

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR---- 461
           L+ +   E A+E+   ++ +G  P   +   ++ GL   G      +  +EM +R     
Sbjct: 867 LVASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPD 926

Query: 462 ILIYEVTMHKLKKA 475
           +  Y + +  L KA
Sbjct: 927 LRTYTIMISGLSKA 940



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 101/478 (21%), Positives = 186/478 (38%), Gaps = 97/478 (20%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           +A++ ++  L +  R E+    ++ M    V ++  F S+ +  C A + DEA   FDVM
Sbjct: 279 FAFSSLLHGLCQAHRLEEAIQLLKAMP--CVPNVVCFNSLMNGLCQARRVDEAFELFDVM 336

Query: 174 SMHGVEQDVVAVNSLLSAIC--RQENQTSRALEFLNRVKKI------------------- 212
              G   DV+  N LL  +C  R+  +  R +E + R +                     
Sbjct: 337 KESGCSADVITYNILLKGLCKLRRIPEAYRHVELMRRTEGCSPNVVTFSTLIQGLCNAGR 396

Query: 213 ----------------VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN-----P 251
                           + P+  ++A LLEG  K G+     + F +M+ER EW      P
Sbjct: 397 VNQAWEVYERMVAVEGISPNRFTYAFLLEGLCKAGDSRRLEQCFEQMLER-EWRSSSSWP 455

Query: 252 EH---------------VLAYETFLITLIRGKQVDEALKFL------------------- 277
            H               ++ Y T +  L +   V +AL  L                   
Sbjct: 456 IHSPEVDFLMVQVCRPTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVL 515

Query: 278 -------RVMKGEN---------CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFN 321
                  R++   N         C P +  +S  +D L K+     A+QL   MV +G  
Sbjct: 516 DGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCR 575

Query: 322 LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 381
              N + Y+ V+  L     +++      QM   G  PD++TYN + +   K +R+ E  
Sbjct: 576 --ANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAV 633

Query: 382 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 441
               EM++  + P+ +   T    L  +   + A+EI +Y+   G  P   + + ++ GL
Sbjct: 634 GLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGL 693

Query: 442 RNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQM 499
              GR+++   + E+M    ++   V  +        ++  + + ++ LER  +  ++
Sbjct: 694 CKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRI 751



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 154/361 (42%), Gaps = 13/361 (3%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAG 161
           R A  G       + L++  L K G  E  +  V  M + G V  +     +  + C  G
Sbjct: 96  RMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELG 155

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221
           + DEA   F  + + G   D V  N+++  + +     +  +      +    P   +F 
Sbjct: 156 RVDEAWFFFQQVLLIGFTPDAVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFT 215

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           I ++G  K GN+  A + F  M +    +P  V  Y+  +  L +  ++D AL  LR   
Sbjct: 216 IAVDGLSKAGNLTGAYEFFDSMPQT-GVSPNTV-TYDALIDGLCKAGKLDIALGLLR--- 270

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
            +N    +  FS+ L  L + +    A+QL   M       +PN++ +N+++  LC    
Sbjct: 271 DKNSQAGMFAFSSLLHGLCQAHRLEEAIQLLKAM-----PCVPNVVCFNSLMNGLCQARR 325

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE-WQPTPLNCA 400
           VD  F  FD M   G   D +TYN++ + L K +R+ E  +    M + E   P  +  +
Sbjct: 326 VDEAFELFDVMKESGCSADVITYNILLKGLCKLRRIPEAYRHVELMRRTEGCSPNVVTFS 385

Query: 401 TAITMLLDADEPEIAIEIWNYILE-NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
           T I  L +A     A E++  ++   GI P   +   LL GL   G    + +  E+ML 
Sbjct: 386 TLIQGLCNAGRVNQAWEVYERMVAVEGISPNRFTYAFLLEGLCKAGDSRRLEQCFEQMLE 445

Query: 460 R 460
           R
Sbjct: 446 R 446



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 104/239 (43%), Gaps = 4/239 (1%)

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++ +L+ G  K G V +A   F + ++ F + P  V+ Y T +  L R  +VD+  K L 
Sbjct: 3   TYNVLINGLCKAGRVCDAFTAFRKAIQ-FGFRPT-VVTYSTVIDGLCRDNEVDKGCKLLE 60

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            M G  C P    ++  ++ L+    +  A  L + M   G    P LI +  +I  LC 
Sbjct: 61  EMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCP--PELITFGLIIKGLCK 118

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
             +++  FR  D+MV  G  PD   + ++   L +  RV E   FF +++   + P  + 
Sbjct: 119 EGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVT 178

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
             T +  L  A   E A  +   + E+   P   +    + GL   G L+    F + M
Sbjct: 179 YNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSM 237



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 116/266 (43%), Gaps = 4/266 (1%)

Query: 182 VVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFG 241
           +V  N L++ +C+          F   ++    P   +++ +++G  ++  V++  K   
Sbjct: 1   MVTYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLE 60

Query: 242 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
           EM  R      + + Y T +  L+   +  EA   L  M    C P L  F   +  L K
Sbjct: 61  EMAGR--GCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCK 118

Query: 302 LNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS 361
             +   A ++ D MV  GF  +P++ ++  ++  LC    VD  + FF Q++  G  PD+
Sbjct: 119 EGEIEAAFRVVDEMVDRGF--VPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDA 176

Query: 362 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 421
           +TYN + + L K  R+         + ++   PT      A+  L  A     A E ++ 
Sbjct: 177 VTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDS 236

Query: 422 ILENGILPLEASANELLVGLRNLGRL 447
           + + G+ P   + + L+ GL   G+L
Sbjct: 237 MPQTGVSPNTVTYDALIDGLCKAGKL 262



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 121/292 (41%), Gaps = 18/292 (6%)

Query: 101  FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
            F   A RG +   YA+N M++     G F   +  +  MK  G+  +  T   +  + CG
Sbjct: 777  FCGMAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCG 836

Query: 160  AGKYDEAVMSFDVMSMHGVEQDV---VAVNSLLSAICRQENQTSRALEFLNR-VKKIVDP 215
              + DEAV  F     H + +D    ++ N+L++++     ++ +ALE L   V     P
Sbjct: 837  NDRIDEAVSYF-----HSIPEDCRDEISYNTLITSLV-ASRRSEQALELLRAMVADGGSP 890

Query: 216  DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK 275
            D  ++  +++G  K G+ E A K   EM  R   +   +  Y   +  L + KQ+  A  
Sbjct: 891  DACNYMTVMDGLFKAGSPEVAAKLLQEM--RSRGHSPDLRTYTIMISGLSKAKQLPLACD 948

Query: 276  FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGL 335
            +   M  +N  P    +S+ +D   K +    A   W ++   G    P + MY+ ++  
Sbjct: 949  YFEEMLRKNLKPDAIVYSSLIDAFCKADKVDDA---WKLLRSSGIE--PTITMYSTMVDS 1003

Query: 336  LCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            LC N   D       +M      P    +  +    +   RV E  K  +++
Sbjct: 1004 LCKNRGTDKALEVIREMKSKNCEPGIHIWTSLATAYVAEGRVDEAVKLVNDL 1055



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/341 (20%), Positives = 144/341 (42%), Gaps = 55/341 (16%)

Query: 96  SSAVDFFRWAGRGQRLSPY--AWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFAS 152
           + A+ +F    R + ++P+  A++ ++D L K GR ++ +  + R+++   +  + TF+ 
Sbjct: 700 TEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSI 759

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK- 211
           + +  C AG+ D  +  F  M+  G + D+ A N++++A C +  + S A   L  +K  
Sbjct: 760 LINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINAYCLK-GEFSAAYALLEEMKTH 818

Query: 212 IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV---LAYETFLITLIRGK 268
            +  +  +  I+++       ++EA       V  F   PE     ++Y T + +L+  +
Sbjct: 819 GIAKNTVTHGIVIKALCGNDRIDEA-------VSYFHSIPEDCRDEISYNTLITSLVASR 871

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           + ++AL+ LR M  +   P    +   +D L K      A +L                 
Sbjct: 872 RSEQALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKL----------------- 914

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
                                 +M   G  PD  TY ++   L K K++     +F EM+
Sbjct: 915 --------------------LQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEML 954

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
           +   +P  +  ++ I     AD+ + A   W  +  +GI P
Sbjct: 955 RKNLKPDAIVYSSLIDAFCKADKVDDA---WKLLRSSGIEP 992



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 69/164 (42%)

Query: 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
           I F   P ++ Y+ VI  LC +++VD   +  ++M   G  P+++TYN +   L+   R 
Sbjct: 28  IQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRA 87

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 437
            E       M  N   P  +     I  L    E E A  + + +++ G +P       L
Sbjct: 88  KEAFSLLERMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVL 147

Query: 438 LVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
           L  L  LGR+ +   F +++L        VT + +    Y   R
Sbjct: 148 LHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTMVDGLYKAGR 191



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 4/151 (2%)

Query: 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 385
           ++ YN +I  LC    V + F  F + +  G  P  +TY+ + + L ++  V +  K   
Sbjct: 1   MVTYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLE 60

Query: 386 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
           EM      P  +   T +  LL     + A  +   +  NG  P   +   ++ GL   G
Sbjct: 61  EMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEG 120

Query: 446 RLSDVRRFAEEMLNRRIL----IYEVTMHKL 472
            +    R  +EM++R  +    I+ V +H L
Sbjct: 121 EIEAAFRVVDEMVDRGFVPDVEIHTVLLHAL 151


>gi|297807171|ref|XP_002871469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317306|gb|EFH47728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 602

 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 106/420 (25%), Positives = 184/420 (43%), Gaps = 26/420 (6%)

Query: 26  SPTSHN--PHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDL 83
           SP +H+  PH+ T   F +  D   IS+    + E         +ESAL  TGI P+  L
Sbjct: 49  SPAAHDSTPHQITVLDF-SKTDLSTISN----LLENTNVVPGSSLESALDETGIEPSLQL 103

Query: 84  VHEVLQLSYDSPSSAVDFFRWA--GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAV--RVM 139
           V  +      SP      F+WA    G  LSP  ++ +++ L K   FE  W+ V  RV 
Sbjct: 104 VQALFDRLSSSPMLLHSVFKWAEMKPGFTLSPSLFDSVINSLCKAREFEIAWSLVFDRVR 163

Query: 140 KEDG--VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH----GVEQDVVAVNSLLSAIC 193
            ++G  ++S  TF  +   Y  AG   +A+ +F+    +        ++  +  LL A+C
Sbjct: 164 SDEGSNLVSADTFIVLIRRYARAGMVQQAIRAFEFARSYEPVCKSASELKLLEVLLDALC 223

Query: 194 RQENQTSRALEFLNRVKKIVD----PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW 249
           + E     A  +L R + ++D    P    F ILL GW +   +++A K + EM +    
Sbjct: 224 K-EGYVREASVYLERRRGMMDSNWVPSVRIFNILLNGWFRSRKLKQAEKLWEEM-KAMNV 281

Query: 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV 309
            P  V+ Y T +    R ++V+ A++ L  MK      T   F+  +D L +    + A+
Sbjct: 282 KPT-VVTYGTLIEGYCRMRRVEIAMEILEEMKMAEMELTFMVFNPIIDGLGEAGRLSEAL 340

Query: 310 QLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFE 369
            + +          P ++ YN+++   C   D+    +    M+  G  P + TYN  F+
Sbjct: 341 GMMERFFVCESG--PTIVTYNSLVKNFCKAGDLPGASKILKMMMTRGVEPTTSTYNHFFK 398

Query: 370 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
              K+ +  E    + ++I+    P  L     + ML +  +  +AI++   +   GI P
Sbjct: 399 YFSKHNKTEEGMNLYFKLIEAGHSPDRLTYHLILKMLCEDGKLSLAIQVNKEMKNRGIDP 458


>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 93/425 (21%), Positives = 188/425 (44%), Gaps = 10/425 (2%)

Query: 54  RIICEILAHASSDDIESALACTGIIPTPDLVHEVL-QLSYDSPSSAVDFFRWAGRGQRLS 112
           +++ EI   + +  +   L   G++ T D  +  L +++ +S    +    +   G   +
Sbjct: 198 QVLVEIGHLSEARKLLDKLLSYGLVVTVDSCNAFLSRIANNSEGIEMAIKVFCEYGISWN 257

Query: 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMS 169
             ++N+++  L + G+ ++    +  M+ D   S P   +++++ D YC  G+  +A+  
Sbjct: 258 TTSYNIIIYSLCRLGKVKEAHRLL--MQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKL 315

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK 229
            D M + G++ +    NS++  +C+              + + + PD   +  L+ G+ K
Sbjct: 316 MDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFK 375

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
            G+V  ANK F EM+ + + +P+++  Y T +    +G +V E       M      P  
Sbjct: 376 LGHVRTANKWFDEMLSK-KISPDYI-TYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDE 433

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
             ++  +D+  K  +  +A  L + MV +G  + PN++ Y A+I  LC + ++D      
Sbjct: 434 VTYTTLIDVYCKAGEMVNAFSLHNEMVQMG--MTPNIVTYGALIDGLCKHGELDTANELL 491

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 409
           D+M   G   +   YN +   + K   + +  K   EM      P  +   T I      
Sbjct: 492 DEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRL 551

Query: 410 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTM 469
            + + A ++   +L+ G+ P   + N L+ G   LG L D  R    ML + I+   +T 
Sbjct: 552 GDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITY 611

Query: 470 HKLKK 474
           + L K
Sbjct: 612 NTLMK 616



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 73/330 (22%), Positives = 140/330 (42%), Gaps = 10/330 (3%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F   F      G   EA    D +  +G+   V + N+ LS I         A++     
Sbjct: 193 FDIFFQVLVEIGHLSEARKLLDKLLSYGLVVTVDSCNAFLSRIANNSEGIEMAIKVFCEY 252

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
              +  +  S+ I++    + G V+EA++   +M   F  +   V++Y T +       +
Sbjct: 253 G--ISWNTTSYNIIIYSLCRLGKVKEAHRLLMQM--DFRSSTPDVVSYSTVIDGYCHLGE 308

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY 329
           + +ALK +  M+ +   P    +++ + +L K+  S  A ++   M  +   ++P+ ++Y
Sbjct: 309 LKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREM--MSQKIIPDNVVY 366

Query: 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389
             +I        V    ++FD+M+     PD +TY  + +   +  +V E +  FHEMI 
Sbjct: 367 TTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMIS 426

Query: 390 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 449
              +P  +   T I +   A E   A  + N +++ G+ P   +   L+ GL   G L  
Sbjct: 427 RGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDT 486

Query: 450 VRRFAEEM----LNRRILIYEVTMHKLKKA 475
                +EM    L   + IY   ++ + KA
Sbjct: 487 ANELLDEMRKKGLQLNVCIYNSMVNGICKA 516



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/304 (20%), Positives = 124/304 (40%), Gaps = 46/304 (15%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F     RG +     +  ++DV  K G     ++    M + G+  ++ T+ ++ D  C 
Sbjct: 421 FHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCK 480

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGD 218
            G+ D A    D M   G++ +V   NS+++ IC+  N   +A++ +  ++   +DPD  
Sbjct: 481 HGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGN-IEQAIKLMKEMEVAGIDPDAI 539

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVER----------------------------FEWN 250
           ++  +++ + + G++++A+K   EM++R                              W 
Sbjct: 540 TYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWM 599

Query: 251 PEH-----VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS 305
            E       + Y T +        ++   K  + M+ +   P     SN  +IL+K +  
Sbjct: 600 LEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPD----SNTYNILIKGHCK 655

Query: 306 THAVQ----LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS 361
              ++    L+  M+  G+  +P +  YNA+I        +      F++M  HG   D 
Sbjct: 656 ARNLKEAWFLYKEMIEKGY--VPTVTSYNALIKRFYKKKKILEARELFEEMRGHGLVADG 713

Query: 362 LTYN 365
             YN
Sbjct: 714 EIYN 717



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/391 (17%), Positives = 161/391 (41%), Gaps = 15/391 (3%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G + + Y +N ++ +L K G+  +    +R M    ++     + ++   +   G    
Sbjct: 322 KGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRT 381

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE----FLNRVKKIVDPDGDSFA 221
           A   FD M    +  D +   +L+        Q  + +E    F   + + + PD  ++ 
Sbjct: 382 ANKWFDEMLSKKISPDYITYTTLIQGF----GQGGKVIEPQNLFHEMISRGLKPDEVTYT 437

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L++ + K G +  A     EMV+     P +++ Y   +  L +  ++D A + L  M+
Sbjct: 438 TLIDVYCKAGEMVNAFSLHNEMVQ-MGMTP-NIVTYGALIDGLCKHGELDTANELLDEMR 495

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
            +     +  +++ ++ + K  +   A++L   M   G +  P+ I Y  VI   C   D
Sbjct: 496 KKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGID--PDAITYTTVIDAYCRLGD 553

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
           +D   +   +M+  G  P  +T+N++         + + ++    M++    P  +   T
Sbjct: 554 IDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNT 613

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461
            +      +      +I+  +   G+ P   + N L+ G      L +     +EM+ + 
Sbjct: 614 LMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKG 673

Query: 462 ILIYEVTMHKLKKAFYNESRSM--RDIFDSL 490
            +    + + L K FY + + +  R++F+ +
Sbjct: 674 YVPTVTSYNALIKRFYKKKKILEARELFEEM 704


>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 93/359 (25%), Positives = 162/359 (45%), Gaps = 7/359 (1%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + + +++D L K+G   +  +    M   G+L  +  ++S+ D  C  G+  EA+  F  
Sbjct: 147 FTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKE 206

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEKEG 231
           M   G+  DV   NSL+  + R          FLN  V +   PD  +F IL++G  KEG
Sbjct: 207 MEGRGISADVYTYNSLIHGLSRA-GLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEG 265

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            V EA +   E++      P+ +L Y T +  L    Q+++A K    +        +  
Sbjct: 266 KVGEAQQIL-ELMHHKGKEPD-ILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFS 323

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           ++  ++   K      A +L++ M   G  L P+ + YN +IG LC +  V    + F +
Sbjct: 324 YNILINGYCKDQKIDEAFRLFEEMRPKG--LKPSTVTYNTLIGALCQSGRVRTAQKLFVE 381

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M   G F    TY ++ + L KN  + E    F  + K E +P     +  +  +  A +
Sbjct: 382 MQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRAGK 441

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 470
            E A + ++ I +NG+ P   + N L+ GL N G LS+  +   +M  +  L   +T +
Sbjct: 442 LEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFN 500



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 141/309 (45%), Gaps = 9/309 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG     + + +++D L K G+  +    + +M   G    + T+ ++ +  C  G+ ++
Sbjct: 245 RGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLED 304

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILL 224
           A   F+ ++  G++ +V + N L++  C+ + +   A      ++ K + P   ++  L+
Sbjct: 305 ATKLFESLADRGIKLNVFSYNILINGYCK-DQKIDEAFRLFEEMRPKGLKPSTVTYNTLI 363

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
               + G V  A K F EM    ++    +  Y   L  L +   ++EA+   + +K   
Sbjct: 364 GALCQSGRVRTAQKLFVEMQTCGQF--LKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTE 421

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
             P ++ FS  LD + +      A + +D +   G  L P+ I YN +I  LCN   +  
Sbjct: 422 HKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNG--LEPDTIAYNILINGLCNKGMLSE 479

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
             +   QM   G  PDS+T+N+I + L+K   +HE  +   EM    + P      T++ 
Sbjct: 480 AVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPD--EAVTSML 537

Query: 405 MLLDADEPE 413
           + L + +P+
Sbjct: 538 LCLASFDPQ 546



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 85/376 (22%), Positives = 163/376 (43%), Gaps = 8/376 (2%)

Query: 67  DIESALACTGIIPTPDLVHEVLQ--LSYDSPSSAVDFFR-WAGRGQRLSPYAWNLMVDVL 123
           D+ S +   GI+P   +   ++     +     A++FF+   GRG     Y +N ++  L
Sbjct: 167 DMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGL 226

Query: 124 GKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDV 182
            + G ++++   + +M + G      TF  + D  C  GK  EA    ++M   G E D+
Sbjct: 227 SRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDI 286

Query: 183 VAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
           +  N+L++ +C           F +   + +  +  S+ IL+ G+ K+  ++EA + F E
Sbjct: 287 LTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEE 346

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
           M  R +      + Y T +  L +  +V  A K    M+    F  L  +   LD L K 
Sbjct: 347 M--RPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKN 404

Query: 303 NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSL 362
                A+ L+  +        PN+ +++ ++  +C    ++  ++ FD++  +G  PD++
Sbjct: 405 GHLEEAIDLFQSIKKTEHK--PNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTI 462

Query: 363 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 422
            YN++   L     + E  K   +M +    P  +     I  LL  +E   AI++   +
Sbjct: 463 AYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEM 522

Query: 423 LENGILPLEASANELL 438
                 P EA  + LL
Sbjct: 523 RNRNFSPDEAVTSMLL 538



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 129/308 (41%), Gaps = 9/308 (2%)

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVE 234
            G E D V V +L+  +   EN    A++  + + +K +  D  ++ IL+ G  K     
Sbjct: 71  RGFEPDAVTVTTLVKGV-WMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKTG 129

Query: 235 EANKTFGEMVERFEWNPEH-VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            A K    + E+ + N +  V  Y   + +L +     EAL     M G    P +  +S
Sbjct: 130 LAIK----LHEKMKGNCKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYS 185

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
           + +D L +      A++ +  M G G +   ++  YN++I  L        V  F + MV
Sbjct: 186 SLMDGLCRFGRLKEALEFFKEMEGRGIS--ADVYTYNSLIHGLSRAGLWKEVTWFLNLMV 243

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G  PD+ T+ ++ + L K  +V E ++    M     +P  L   T +  L    + E
Sbjct: 244 DRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLE 303

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 473
            A +++  + + GI     S N L+ G     ++ +  R  EEM  + +    VT + L 
Sbjct: 304 DATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLI 363

Query: 474 KAFYNESR 481
            A     R
Sbjct: 364 GALCQSGR 371


>gi|242035429|ref|XP_002465109.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
 gi|241918963|gb|EER92107.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
          Length = 1153

 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 99/406 (24%), Positives = 180/406 (44%), Gaps = 22/406 (5%)

Query: 63  ASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRW-----AGRGQRLSPYAWN 117
           A + ++  A+   GI P+    + VL +S+      VD   W       RG + + Y++ 
Sbjct: 195 AEAMEVYKAMVEDGISPSVR-TYSVLMVSFGKKRD-VDTVLWLLNEMEARGVKPNVYSYT 252

Query: 118 LMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176
           + + VLG+  RF++ +  +  M++ G    + T   +    C AG+  +A   F  M   
Sbjct: 253 ICIRVLGQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQVLCDAGRLSDAKDVFWKMKAS 312

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD---SFAILLEGWEKEGNV 233
             + D V   +LL   C     +   +E  N +  + D   D   S+  +++   + G +
Sbjct: 313 DQKPDRVTYITLLDK-CGDSGDSQSVMEIWNAM--VADGYNDNIVSYTAVVDALCQVGRL 369

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           +EA   F EM E+   +PE   +Y + +   ++    D AL+    M    C P+   ++
Sbjct: 370 DEALAVFDEMKEK-GISPEQ-YSYNSLISGFLKADMFDRALELFNHMNA--CGPSPNGYT 425

Query: 294 NALDI--LVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           + L I    K   S  A+Q ++ M   G  ++P++   NAV+  L  +  +    R F +
Sbjct: 426 HVLFINYYGKSGQSLKAIQRYEHMKSKG--IVPDVAAANAVLSSLARSGRLGMAKRVFYE 483

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           +   G  PD++TY M+ +C  K  +  E   FF +M++    P  L   + I  L    +
Sbjct: 484 LKDMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVETGCVPDVLALNSLIDTLYKGGK 543

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
              A ++++ + E  I P   + N LL GL   G++ +V    EEM
Sbjct: 544 GNEAWKLFHQLKEMKIEPTNGTYNTLLSGLGREGKVKEVMHLLEEM 589



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 77/344 (22%), Positives = 162/344 (47%), Gaps = 5/344 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKED-GVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++  LG+ G+ +++ + +  M       +L T+ ++ D     G+ + A+     M+
Sbjct: 566 YNTLLSGLGREGKVKEVMHLLEEMTHSIHPPNLITYNTVLDCLSKNGEVNCAIGMLYSMT 625

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G   D+ + N+++  + ++E +   A     ++KKI+ PD  +   +L  + K G ++
Sbjct: 626 EKGCTPDLSSYNTVMYGLIKEE-RFEEAFRMFCQMKKILAPDYATLCTILPSFVKNGLMK 684

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           EA  T  E + + + N +   ++ + +  ++    V+++++F   +          F   
Sbjct: 685 EALHTVKEYILKADCNTDKS-SFHSLMEGILNKAGVEKSIEFAENIASRGILLNDFFLCP 743

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
            +  L K   +  A QL++   G+G +L      YN++I  L + + +D     F +M  
Sbjct: 744 LIRHLCKHKKALEAHQLFNKFKGLGVSLKTG--SYNSLIRGLVDENLIDIAEDLFTEMKR 801

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 414
            G  PD  TYN+I + + K+ R+ E+ +   EM +  ++ T +   T I+ L+ +   E 
Sbjct: 802 LGCGPDEFTYNLILDAMGKSMRIEEMLRVQAEMHRKGYESTYVTYNTIISGLVKSKRLEQ 861

Query: 415 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
           AI+++  ++  G  P   +   LL GL   G++ D      EML
Sbjct: 862 AIDLYYNLMSEGFSPTPCTYGPLLDGLLKAGKMVDAENLFNEML 905



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 108/439 (24%), Positives = 183/439 (41%), Gaps = 23/439 (5%)

Query: 33  HRPTRPRFPTHLDAPYISSSARIICEI----LAHASSDDIESALACTGIIPTPDLVHEVL 88
            +P R  + T LD    S  ++ + EI    +A   +D+I S  A        D + +V 
Sbjct: 314 QKPDRVTYITLLDKCGDSGDSQSVMEIWNAMVADGYNDNIVSYTAVV------DALCQVG 367

Query: 89  QLSYDSPSSAVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS 146
           +L  D   +  D  +  G    +SP  Y++N ++    K   F++       M   G   
Sbjct: 368 RL--DEALAVFDEMKEKG----ISPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSP 421

Query: 147 LPTFASIFDSYCG-AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
                 +F +Y G +G+  +A+  ++ M   G+  DV A N++LS++ R          F
Sbjct: 422 NGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLSSLARSGRLGMAKRVF 481

Query: 206 LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
                  V PD  ++ ++++   K    +EA   F +MVE     P+ VLA  + + TL 
Sbjct: 482 YELKDMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVET-GCVPD-VLALNSLIDTLY 539

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN 325
           +G + +EA K    +K     PT   ++  L  L +       + L + M        PN
Sbjct: 540 KGGKGNEAWKLFHQLKEMKIEPTNGTYNTLLSGLGREGKVKEVMHLLEEMTHSIHP--PN 597

Query: 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 385
           LI YN V+  L  N +V+        M   G  PD  +YN +   LIK +R  E  + F 
Sbjct: 598 LITYNTVLDCLSKNGEVNCAIGMLYSMTEKGCTPDLSSYNTVMYGLIKEERFEEAFRMFC 657

Query: 386 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
           +M K         C    + + +    E    +  YIL+      ++S + L+ G+ N  
Sbjct: 658 QMKKILAPDYATLCTILPSFVKNGLMKEALHTVKEYILKADCNTDKSSFHSLMEGILNKA 717

Query: 446 RLSDVRRFAEEMLNRRILI 464
            +     FAE + +R IL+
Sbjct: 718 GVEKSIEFAENIASRGILL 736



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 156/343 (45%), Gaps = 6/343 (1%)

Query: 117  NLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176
            +LM  +L K G  + +  A  +     +L+      +    C   K  EA   F+     
Sbjct: 708  SLMEGILNKAGVEKSIEFAENIASRGILLNDFFLCPLIRHLCKHKKALEAHQLFNKFKGL 767

Query: 177  GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEE 235
            GV     + NSL+  +   EN    A +    +K++   PD  ++ ++L+   K   +EE
Sbjct: 768  GVSLKTGSYNSLIRGLV-DENLIDIAEDLFTEMKRLGCGPDEFTYNLILDAMGKSMRIEE 826

Query: 236  ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
              +   EM  R  +   +V  Y T +  L++ K++++A+     +  E   PT   +   
Sbjct: 827  MLRVQAEM-HRKGYESTYV-TYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPL 884

Query: 296  LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
            LD L+K      A  L++ M+  G    PN  +YN ++       + +NV + F++MV  
Sbjct: 885  LDGLLKAGKMVDAENLFNEMLEYGCK--PNCTIYNILLNGHRIAGNTENVCQIFEKMVEQ 942

Query: 356  GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 415
            G  PD  +Y ++ + L    R+++   +F ++++   +P  +     I  L  ++  E A
Sbjct: 943  GINPDIKSYTVLIDTLCTAGRLNDGLSYFRQLLELGLEPDLIIYNLLIDGLGKSERIEEA 1002

Query: 416  IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
            + ++N + + GI+P   + N L++ L   G+ S+  +  EE+L
Sbjct: 1003 VCLFNEMKKKGIVPNLYTYNSLILHLGKAGKASEAAQMYEELL 1045



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/320 (21%), Positives = 138/320 (43%), Gaps = 35/320 (10%)

Query: 107  RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDE 165
            +G   +   +N ++  L K+ R EQ  +    +  +G    P T+  + D    AGK  +
Sbjct: 837  KGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKAGKMVD 896

Query: 166  AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
            A   F+ M  +G + +    N LL+      N  +    F   V++ ++PD  S+ +L++
Sbjct: 897  AENLFNEMLEYGCKPNCTIYNILLNGHRIAGNTENVCQIFEKMVEQGINPDIKSYTVLID 956

Query: 226  GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
                 G + +    F +++E     P+ ++ Y   +  L + ++++EA+     MK +  
Sbjct: 957  TLCTAGRLNDGLSYFRQLLE-LGLEPDLII-YNLLIDGLGKSERIEEAVCLFNEMKKKGI 1014

Query: 286  FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
             P L  +++ +  L K   ++ A Q+++ ++  G+   PN+  YNA+I     +   DN 
Sbjct: 1015 VPNLYTYNSLILHLGKAGKASEAAQMYEELLIKGWK--PNVFTYNALIRGYSVSGSTDNA 1072

Query: 346  FRFFD------------------------------QMVFHGAFPDSLTYNMIFECLIKNK 375
            +  +D                              +M   G  PD  TYN+I + + K+ 
Sbjct: 1073 YAAYDCVAVGVSLKTALISGLVDENLINIAEGLFAEMKRRGCGPDQFTYNLILDAIGKSM 1132

Query: 376  RVHEVEKFFHEMIKNEWQPT 395
            R+ E+ K   E+ ++  Q T
Sbjct: 1133 RIEEMLKVQEEIAEDLNQLT 1152



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/279 (20%), Positives = 115/279 (41%), Gaps = 9/279 (3%)

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
           K+IV  +  +FA +  G   +G +  A      M  R      +   Y   +  L++   
Sbjct: 136 KQIVKANVGTFATVFSGVGVQGGLRSAPVALPVM--REAGMSLNGYTYNGLIYFLVKSGF 193

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY 329
             EA++  + M  +   P+++ +S  +    K  D    + L + M   G    PN+  Y
Sbjct: 194 DAEAMEVYKAMVEDGISPSVRTYSVLMVSFGKKRDVDTVLWLLNEMEARGVK--PNVYSY 251

Query: 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389
              I +L      D  ++   +M   G  PD +T+ ++ + L    R+ + +  F +M  
Sbjct: 252 TICIRVLGQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQVLCDAGRLSDAKDVFWKMKA 311

Query: 390 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 449
           ++ +P  +   T +    D+ + +  +EIWN ++ +G      S   ++  L  +GRL +
Sbjct: 312 SDQKPDRVTYITLLDKCGDSGDSQSVMEIWNAMVADGYNDNIVSYTAVVDALCQVGRLDE 371

Query: 450 VRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFD 488
                +EM  + I   + + + L   F        D+FD
Sbjct: 372 ALAVFDEMKEKGISPEQYSYNSLISGFLKA-----DMFD 405


>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
 gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
          Length = 500

 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 90/413 (21%), Positives = 166/413 (40%), Gaps = 39/413 (9%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
            + +++D L K GR ++    +  M++  V +  T+ S+    C A +  EA    + M 
Sbjct: 83  TYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAERASEAYDLLEEMV 142

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G   D+    +L++  C+ +        F   V +   PD  +++ L++G  KEG ++
Sbjct: 143 YSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLK 202

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           EA   FG M++     P  V  Y + +    R  ++DEA+  L  M      P +  ++ 
Sbjct: 203 EAIDLFGRMIKSGSCMPNTV-TYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTT 261

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
            ++   KL     A  L + M   G  L P+++ + +++  LC  + + +      +M  
Sbjct: 262 LMNGFCKLARLDDAYDLLNQMTRKG--LTPDVVTFTSLMDGLCRENRLSDAVHILGEMRR 319

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKF-------------FHEMIKN----------- 390
               P   TYN I +   +  ++ E  KF             F+ MI+            
Sbjct: 320 KSCSPTVYTYNTILDGYCRANQLEEARKFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAM 379

Query: 391 ---------EWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN-GILPLEASANELLVG 440
                       P  +   T I  L    + + A  ++  +LE  G LP   + + L+ G
Sbjct: 380 ELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLITG 439

Query: 441 LRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERR 493
           L N G L   R + E+     I  Y + +   +KA  N     R++ D + +R
Sbjct: 440 LCNAGMLDRARGYIEKGCVPNIGTYNLLIDAFRKA--NRDEDARELLDDMVQR 490



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 140/312 (44%), Gaps = 8/312 (2%)

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKE 230
           +++ +    D V   SL+  +C+ + +  +AL FL + V K   PD  ++  ++     E
Sbjct: 1   MVATNSCSADFVTYTSLIQGLCKVK-RLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVE 59

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
             + EA K   EM  R    P +V+ Y   +  L +G +VDEA+  L  M+ + C PT  
Sbjct: 60  NRLHEARKFLEEMANR-NLTP-NVVTYTVLIDGLCKGGRVDEAVALLSKMR-KKCVPTAV 116

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
            +++ +  L K   ++ A  L + MV  G   +P++  Y  +I   C +   D+  R F+
Sbjct: 117 TYNSLISGLCKAERASEAYDLLEEMVYSG--CIPDIFTYTTLITGFCKSKKSDDALRVFE 174

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN-EWQPTPLNCATAITMLLDA 409
           Q+V  G  PD +TY+ + + L K  R+ E    F  MIK+    P  +   + I+     
Sbjct: 175 QLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRM 234

Query: 410 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTM 469
            + + A+ +   + E G  P   +   L+ G   L RL D      +M  + +    VT 
Sbjct: 235 GKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTF 294

Query: 470 HKLKKAFYNESR 481
             L      E+R
Sbjct: 295 TSLMDGLCRENR 306



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 79/383 (20%), Positives = 156/383 (40%), Gaps = 8/383 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +  ++  L K  R EQ    +  M   G    + T+ ++  + C   +  EA    + M
Sbjct: 13  TYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEM 72

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
           +   +  +VV    L+  +C+   +   A+  L++++K   P   ++  L+ G  K    
Sbjct: 73  ANRNLTPNVVTYTVLIDGLCKG-GRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAERA 131

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            EA     EMV  +      +  Y T +    + K+ D+AL+    +      P +  +S
Sbjct: 132 SEAYDLLEEMV--YSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYS 189

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +D L K      A+ L+  M+  G + MPN + YN++I   C    +D      ++M 
Sbjct: 190 CLIDGLCKEGRLKEAIDLFGRMIKSG-SCMPNTVTYNSLISGFCRMGKMDEAMNLLERMA 248

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G+ PD +TY  +     K  R+ +     ++M +    P  +   + +  L   +   
Sbjct: 249 ETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLS 308

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR--RILIYEVTMHK 471
            A+ I   +      P   + N +L G     +L + R+F  E ++    ++ + + +  
Sbjct: 309 DAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEMDCPPNVVSFNIMIRG 368

Query: 472 LKKAFYNESRSMRDIFDSLERRC 494
           L K     S +M  + ++  RRC
Sbjct: 369 LCKV-NRSSEAMELVEEARRRRC 390



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 115/294 (39%), Gaps = 74/294 (25%)

Query: 98  AVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFAS 152
           A+D F    +     P    +N ++    + G+ ++  N +  M E G  S P   T+ +
Sbjct: 204 AIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETG--SSPDVVTYTT 261

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-K 211
           + + +C   + D+A    + M+  G+  DVV   SL+  +CR EN+ S A+  L  ++ K
Sbjct: 262 LMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCR-ENRLSDAVHILGEMRRK 320

Query: 212 IVDPDGDSFAILLEGWEKEGNVEEANK-------------TFG----------------E 242
              P   ++  +L+G+ +   +EEA K             +F                 E
Sbjct: 321 SCSPTVYTYNTILDGYCRANQLEEARKFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAME 380

Query: 243 MVE---RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE---------------- 283
           +VE   R   NP+ V+ Y T +  L R K+VDEA +  R M  E                
Sbjct: 381 LVEEARRRRCNPD-VVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLITG 439

Query: 284 ----------------NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFN 321
                            C P +  ++  +D   K N    A +L D MV  GF 
Sbjct: 440 LCNAGMLDRARGYIEKGCVPNIGTYNLLIDAFRKANRDEDARELLDDMVQRGFG 493


>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
 gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
           Group]
 gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
          Length = 742

 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 95/426 (22%), Positives = 172/426 (40%), Gaps = 56/426 (13%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAV--- 167
            P  +  ++  LG  G  + M   V  M+ +G  + L    S  DSY G   +D+AV   
Sbjct: 73  GPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLGVVHSFLDSYEGQQLFDDAVDLI 132

Query: 168 ----------------------------------MSFDVMSMHGVEQDVVAVNSLLSAIC 193
                                               +  M   G++ DVV  N+L+ A+C
Sbjct: 133 LNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALC 192

Query: 194 RQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH 253
           R     +  L       + V PD  +F  L++G+ +EG++E A +    M+E        
Sbjct: 193 RAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEM------G 246

Query: 254 VLAYETFLITLIRG----KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV 309
             A +  +  LI G     +V++AL +++    +   P    ++  ++ L + +   HA+
Sbjct: 247 CSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHAL 306

Query: 310 QLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFE 369
           ++ D+MV  G +  P++  YN V+  LC N  ++      +QMV  G  PD  T+N +  
Sbjct: 307 KVMDVMVQEGHD--PDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIA 364

Query: 370 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
            L    R+ E      ++      P        I  L    +P +A+ ++  +  +G  P
Sbjct: 365 ALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTP 424

Query: 430 LEASANELLVGLRNLGRLSDVRRFAEEMLN----RRILIYEVTMHKLKKAFYNESRSMRD 485
            E + N L+  L +LG+L       ++M +    R  + Y   +  L K    E     +
Sbjct: 425 DEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIE--EAEE 482

Query: 486 IFDSLE 491
           +FD ++
Sbjct: 483 VFDQMD 488



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 151/344 (43%), Gaps = 7/344 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N  V+ L +N         + VM ++G    + T+  + +  C  G+ +EA    + M 
Sbjct: 289 YNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMV 348

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNV 233
             G   D+   N+L++A+C   N+   AL+   +V  K V PD  +F IL+    K G+ 
Sbjct: 349 DRGCLPDITTFNTLIAALC-TGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDP 407

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
             A + F EM +     P+ V  Y T +  L    ++ +AL  L+ M+   C  +   ++
Sbjct: 408 HLALRLFEEM-KNSGCTPDEV-TYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYN 465

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +D L K      A +++D M   G +   N I +N +I  LC +  +D+ F   +QM+
Sbjct: 466 TIIDGLCKKMRIEEAEEVFDQMDLQGIS--RNAITFNTLIDGLCKDKKIDDAFELINQMI 523

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G  P+++TYN I     K   + +       M  N ++   +   T I  L  A   +
Sbjct: 524 SEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQ 583

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           +A+++   +   G+ P   + N +L  L     + D      EM
Sbjct: 584 VALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREM 627



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 146/350 (41%), Gaps = 8/350 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +N++V+ L KNG+ E+    +  M + G L  + TF ++  + C   + +EA+     
Sbjct: 322 FTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQ 381

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEG 231
           +++ GV  DV   N L++A+C+       AL     +K     PD  ++  L++     G
Sbjct: 382 VTVKGVSPDVYTFNILINALCKV-GDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLG 440

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            + +A     +M       P   + Y T +  L +  +++EA +    M  +        
Sbjct: 441 KLGKALDLLKDM--ESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAIT 498

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           F+  +D L K      A +L + M+  G  L PN I YN+++   C   D+       + 
Sbjct: 499 FNTLIDGLCKDKKIDDAFELINQMISEG--LQPNNITYNSILTHYCKQGDIKKAADILET 556

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M  +G   D +TY  +   L K  R     K    M     +PTP      +  L   + 
Sbjct: 557 MTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNN 616

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGL-RNLGRLSDVRRFAEEMLNR 460
              A+ ++  + E G  P   +   +  GL R  G + +   F  EM+++
Sbjct: 617 IRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDK 666



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 81/397 (20%), Positives = 158/397 (39%), Gaps = 15/397 (3%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP----TFASIFDS 156
           +     RG +     +N ++  L    R  Q+  AV +++E     +     TF ++   
Sbjct: 169 YSEMGARGIKPDVVTFNTLMKALC---RAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQG 225

Query: 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDP 215
           +   G  + A+     M   G     V VN L++  C+   +   AL ++ + +    +P
Sbjct: 226 FVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKL-GRVEDALGYIQQEIADGFEP 284

Query: 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK 275
           D  ++   + G  +  +V  A K    MV+  E +   V  Y   +  L +  Q++EA  
Sbjct: 285 DQITYNTFVNGLCQNDHVGHALKVMDVMVQ--EGHDPDVFTYNIVVNCLCKNGQLEEAKG 342

Query: 276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGL 335
            L  M    C P +  F+  +  L   N    A+ L   +   G +  P++  +N +I  
Sbjct: 343 ILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVS--PDVYTFNILINA 400

Query: 336 LCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 395
           LC   D     R F++M   G  PD +TYN + + L    ++ +      +M       +
Sbjct: 401 LCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRS 460

Query: 396 PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 455
            +   T I  L      E A E+++ +   GI     + N L+ GL    ++ D      
Sbjct: 461 TITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELIN 520

Query: 456 EMLNRRILIYEVTMHKLKKAFYNES--RSMRDIFDSL 490
           +M++  +    +T + +   +  +   +   DI +++
Sbjct: 521 QMISEGLQPNNITYNSILTHYCKQGDIKKAADILETM 557


>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
 gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
 gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
 gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
          Length = 683

 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 89/371 (23%), Positives = 169/371 (45%), Gaps = 11/371 (2%)

Query: 109 QRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           QR+SP    +N ++  L K    ++    +  M + GV+    T+ SI   +C +G+  E
Sbjct: 117 QRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKE 176

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A++    M   GVE DVV  NSL+  +C+    T     F +  K+ + P+  ++  LL+
Sbjct: 177 AIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQ 236

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+  +G + E +     MV R   +P H + +   +    + ++V+EA+     M+ +  
Sbjct: 237 GYATKGALVEMHGLLDLMV-RNGIHPNHYV-FSILVCAYAKQEKVEEAMLVFSKMRQQGL 294

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P    +   + IL K      A+  ++ M+  G  L P  I+YN++I  LC  +  +  
Sbjct: 295 NPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEG--LSPGNIVYNSLIHGLCTCNKWERA 352

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
                +M+  G   +++ +N I +   K  RV E EK F  M++   +P  +  +T I  
Sbjct: 353 EELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDG 412

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNRR 461
              A + + A ++   ++  G+ P   + + L+ G   + R+ D      EM    ++  
Sbjct: 413 YCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPD 472

Query: 462 ILIYEVTMHKL 472
           I+ Y + +  L
Sbjct: 473 IITYNIILQGL 483



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 66/293 (22%), Positives = 128/293 (43%), Gaps = 11/293 (3%)

Query: 107 RGQRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           R Q L+P A  +  ++ +L K+GR E        M ++G+      + S+    C   K+
Sbjct: 290 RQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKW 349

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN--QTSRALEFLNRVKKIVDPDGDSFA 221
           + A      M   G+  + +  NS++ + C++    ++ +  + + R+   V PD  +++
Sbjct: 350 ERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIG--VKPDIITYS 407

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L++G+   G ++EA K    MV      P+ V  Y T +    +  ++ +AL   R M+
Sbjct: 408 TLIDGYCLAGKMDEATKLLASMVS-VGMKPDCV-TYSTLINGYCKISRMKDALVLFREME 465

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
                P +  ++  L  L +   +  A +L+  +   G  L   L  YN ++  LC N  
Sbjct: 466 SSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITKSGRQL--ELSTYNIILHGLCKNKL 523

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
            D+  R F  +       ++ T+N++ + L+K  R  E +  F     N   P
Sbjct: 524 TDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVP 576



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 79/180 (43%), Gaps = 2/180 (1%)

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           PD  S+ ILL G   E   +EA +    M +     P  V++Y T +    +   +D+  
Sbjct: 49  PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDKTY 108

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
                M  +   P +  +++ +  L K      A+++   MV  G  +MP+ + YN+++ 
Sbjct: 109 STYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSG--VMPDCMTYNSIVH 166

Query: 335 LLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
             C++        F  +M   G  PD +TYN + + L KN R  E  K F  M K   +P
Sbjct: 167 GFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKP 226



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 95/231 (41%), Gaps = 7/231 (3%)

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK--GENCFPTLKF 291
           E+A   F E++ R       V +Y   L  L    +  EAL+ L +M   G +C P +  
Sbjct: 34  EDARHVFDELLRR---GIPDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVS 90

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           +S  ++   K  D       ++ M  +   + PN++ YN++I  LC    VD        
Sbjct: 91  YSTVINGFFKEGDLDKTYSTYNEM--LDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTT 148

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           MV  G  PD +TYN I      + +  E   F  +M  +  +P  +   + +  L     
Sbjct: 149 MVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGR 208

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
              A +I++ + + G+ P   +   LL G    G L ++    + M+   I
Sbjct: 209 CTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGI 259


>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
 gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
          Length = 500

 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 90/413 (21%), Positives = 166/413 (40%), Gaps = 39/413 (9%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
            + +++D L K GR ++    +  M++  V +  T+ S+    C A +  EA    + M 
Sbjct: 83  TYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAERASEAYDLLEEMV 142

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G   D+    +L++  C+ +        F   V +   PD  +++ L++G  KEG ++
Sbjct: 143 YSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLK 202

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           EA   FG M++     P  V  Y + +    R  ++DEA+  L  M      P +  ++ 
Sbjct: 203 EAIDLFGRMIKSGSCMPNTV-TYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTT 261

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
            ++   KL     A  L + M   G  L P+++ + +++  LC  + + +      +M  
Sbjct: 262 LMNGFCKLARLDDAYDLLNQMTRKG--LTPDVVTFTSLMDGLCRENRLSDAVHILGEMRR 319

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKF-------------FHEMIKN----------- 390
               P   TYN I +   +  ++ E  KF             F+ MI+            
Sbjct: 320 KSCSPTVYTYNTILDGYCRANQLEEARKFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAM 379

Query: 391 ---------EWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN-GILPLEASANELLVG 440
                       P  +   T I  L    + + A  ++  +LE  G LP   + + L+ G
Sbjct: 380 ELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLVTG 439

Query: 441 LRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERR 493
           L N G L   R + E+     I  Y + +   +KA  N     R++ D + +R
Sbjct: 440 LCNAGMLDRARGYIEKGCVPNIGTYNLLIDAFRKA--NRDEDARELLDDMVQR 490



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 140/312 (44%), Gaps = 8/312 (2%)

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKE 230
           +++ +    D V   SL+  +C+ + +  +AL FL + V K   PD  ++  ++     E
Sbjct: 1   MVATNSCSADFVTYTSLIQGLCKVK-RLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVE 59

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
             + EA K   EM  R    P +V+ Y   +  L +G +VDEA+  L  M+ + C PT  
Sbjct: 60  NRLHEARKFLEEMANR-NLTP-NVVTYTVLIDGLCKGGRVDEAVALLSKMR-KKCVPTAV 116

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
            +++ +  L K   ++ A  L + MV  G   +P++  Y  +I   C +   D+  R F+
Sbjct: 117 TYNSLISGLCKAERASEAYDLLEEMVYSG--CIPDIFTYTTLITGFCKSKKSDDALRVFE 174

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN-EWQPTPLNCATAITMLLDA 409
           Q+V  G  PD +TY+ + + L K  R+ E    F  MIK+    P  +   + I+     
Sbjct: 175 QLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRM 234

Query: 410 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTM 469
            + + A+ +   + E G  P   +   L+ G   L RL D      +M  + +    VT 
Sbjct: 235 GKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTF 294

Query: 470 HKLKKAFYNESR 481
             L      E+R
Sbjct: 295 TSLMDGLCRENR 306



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/383 (20%), Positives = 156/383 (40%), Gaps = 8/383 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +  ++  L K  R EQ    +  M   G    + T+ ++  + C   +  EA    + M
Sbjct: 13  TYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEM 72

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
           +   +  +VV    L+  +C+   +   A+  L++++K   P   ++  L+ G  K    
Sbjct: 73  ANRNLTPNVVTYTVLIDGLCKG-GRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAERA 131

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            EA     EMV  +      +  Y T +    + K+ D+AL+    +      P +  +S
Sbjct: 132 SEAYDLLEEMV--YSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYS 189

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +D L K      A+ L+  M+  G + MPN + YN++I   C    +D      ++M 
Sbjct: 190 CLIDGLCKEGRLKEAIDLFGRMIKSG-SCMPNTVTYNSLISGFCRMGKMDEAMNLLERMA 248

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G+ PD +TY  +     K  R+ +     ++M +    P  +   + +  L   +   
Sbjct: 249 ETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLS 308

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR--RILIYEVTMHK 471
            A+ I   +      P   + N +L G     +L + R+F  E ++    ++ + + +  
Sbjct: 309 DAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEMDCPPNVVSFNIMIRG 368

Query: 472 LKKAFYNESRSMRDIFDSLERRC 494
           L K     S +M  + ++  RRC
Sbjct: 369 LCKV-NRSSEAMELVEEARRRRC 390



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 117/296 (39%), Gaps = 74/296 (25%)

Query: 98  AVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFAS 152
           A+D F    +     P    +N ++    + G+ ++  N +  M E G  S P   T+ +
Sbjct: 204 AIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETG--SSPDVVTYTT 261

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-K 211
           + + +C   + D+A    + M+  G+  DVV   SL+  +CR EN+ S A+  L  ++ K
Sbjct: 262 LMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCR-ENRLSDAVHILGEMRRK 320

Query: 212 IVDPDGDSFAILLEGWEKEGNVEEANK-------------TFG----------------E 242
              P   ++  +L+G+ +   +EEA K             +F                 E
Sbjct: 321 SCSPTVYTYNTILDGYCRANQLEEARKFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAME 380

Query: 243 MVE---RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE---------------- 283
           +VE   R   NP+ V+ Y T +  L R K+VDEA +  R M  E                
Sbjct: 381 LVEEARRRRCNPD-VVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLVTG 439

Query: 284 ----------------NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLM 323
                            C P +  ++  +D   K N    A +L D MV  GF ++
Sbjct: 440 LCNAGMLDRARGYIEKGCVPNIGTYNLLIDAFRKANRDEDARELLDDMVQRGFGVV 495


>gi|242051246|ref|XP_002463367.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
 gi|241926744|gb|EER99888.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
          Length = 543

 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 90/382 (23%), Positives = 163/382 (42%), Gaps = 21/382 (5%)

Query: 94  SPSSAVDFFRWAGR--------------GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM 139
           + S  VD F  +GR              G RL+   +N ++D   +     ++   + +M
Sbjct: 134 AASVVVDGFCKSGRVDDARALLDEMPRHGVRLNALCYNSLLDCYVRRKDDARVQELLEIM 193

Query: 140 KEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198
           +  G+  ++ T+  + DS   AG   +     D M    V  DV    ++++A CR  N 
Sbjct: 194 ENGGIEATVGTYTILVDSLSTAGDISKVEAVVDEMKAKNVAGDVYLYTAVINAYCRAGN- 252

Query: 199 TSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
             RA E  +  V   ++P+  ++ +L+ G+ K G +E A     +M  R   + +  + +
Sbjct: 253 VRRASEVFDECVGNGIEPNERTYGVLINGFCKIGQMEAAEMLLADMQGRGVGHNQ--IIF 310

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317
            T +    R   VD ALK    M+       +  ++     L ++N    A  L  IM+ 
Sbjct: 311 NTMIDGYCRQGMVDNALKVKAAMEKMGIELDVYTYNTLACGLCRVNRMAEAKTLLHIMIE 370

Query: 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
            G  + PN + Y  +I + C   D+    R F +M   GA P  +TYN++ +  IK   +
Sbjct: 371 KG--VPPNYVTYTTLISIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKKGSI 428

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 437
            E E+F  EM K    P     A+ +       + ++A++++  +   G  P   +   L
Sbjct: 429 REAERFRKEMEKKGLVPDVYTYASLVHGHCVNGKVDVALKLFEEMKHRGTEPNVVAYTAL 488

Query: 438 LVGLRNLGRLSDVRRFAEEMLN 459
           + GL   GR  +  +  ++ML 
Sbjct: 489 ISGLAKEGRSEEAFQLYDDMLK 510



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/315 (22%), Positives = 131/315 (41%), Gaps = 5/315 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           + ++VD L   G   ++   V  MK   V   +  + ++ ++YC AG    A   FD   
Sbjct: 205 YTILVDSLSTAGDISKVEAVVDEMKAKNVAGDVYLYTAVINAYCRAGNVRRASEVFDECV 264

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
            +G+E +      L++  C+     +  +   +   + V  +   F  +++G+ ++G V+
Sbjct: 265 GNGIEPNERTYGVLINGFCKIGQMEAAEMLLADMQGRGVGHNQIIFNTMIDGYCRQGMVD 324

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
            A K    M E+     + V  Y T    L R  ++ EA   L +M  +   P    ++ 
Sbjct: 325 NALKVKAAM-EKMGIELD-VYTYNTLACGLCRVNRMAEAKTLLHIMIEKGVPPNYVTYTT 382

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
            + I  K  D   A +L+  M G G   MP+++ YN ++        +    RF  +M  
Sbjct: 383 LISIHCKEGDMVEARRLFREMAGKG--AMPSVVTYNVMMDGYIKKGSIREAERFRKEMEK 440

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 414
            G  PD  TY  +      N +V    K F EM     +P  +     I+ L      E 
Sbjct: 441 KGLVPDVYTYASLVHGHCVNGKVDVALKLFEEMKHRGTEPNVVAYTALISGLAKEGRSEE 500

Query: 415 AIEIWNYILENGILP 429
           A ++++ +L+ G+ P
Sbjct: 501 AFQLYDDMLKAGLTP 515



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 65/126 (51%), Gaps = 3/126 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F   AG+G   S   +N+M+D   K G   +     + M++ G++  + T+AS+   +C 
Sbjct: 400 FREMAGKGAMPSVVTYNVMMDGYIKKGSIREAERFRKEMEKKGLVPDVYTYASLVHGHCV 459

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL-NRVKKIVDPDGD 218
            GK D A+  F+ M   G E +VVA  +L+S + + E ++  A +   + +K  + PD  
Sbjct: 460 NGKVDVALKLFEEMKHRGTEPNVVAYTALISGLAK-EGRSEEAFQLYDDMLKAGLTPDDS 518

Query: 219 SFAILL 224
            ++ L+
Sbjct: 519 LYSALV 524


>gi|225460540|ref|XP_002272860.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61360
           [Vitis vinifera]
 gi|296081020|emb|CBI18524.3| unnamed protein product [Vitis vinifera]
          Length = 513

 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/370 (21%), Positives = 171/370 (46%), Gaps = 12/370 (3%)

Query: 98  AVDFFRWAGRGQRLSPY--AWNLMVDVLGKNGRFEQMWNAVRVMKED--GVLSLPTFASI 153
           A +FF+++ +     P   A+   + +L +   F++ W  +  +++    +L+L + + +
Sbjct: 95  AFEFFKFSLQHSEFCPSSDAFEKTLHILTRMRYFDKAWELMEEIQQTHPSLLTLKSMSIM 154

Query: 154 FDSYCGAGKYDEAVMSFDVMSMH---GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK 210
                    Y++ + +F  M  +   G E      N LL A C Q  Q   A    +++ 
Sbjct: 155 LSRIAKFQSYEDTLEAFGRMEKNVFFGREFGANEFNVLLRAFCTQR-QMKEARSVFHKMH 213

Query: 211 KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270
               P+  +  ILL G+++ G+V      + EM+ R  + P  V  Y   +    +    
Sbjct: 214 SRFSPNTKTMNILLLGFKESGDVTAVELFYHEMIRR-GFKPNSV-TYNIRIDAYCKKGCF 271

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYN 330
            + L+ L  M+  NC PTL+  +  +       + + A +L++  + I  NL P++ +YN
Sbjct: 272 GDGLRLLEEMEKANCPPTLETITTLIHGAGVAQNISRARELFN-EISIR-NLQPDIGVYN 329

Query: 331 AVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 390
           A +  L  + +V +     D+M   G   DS+TY+ +F  L+++  +  V + +H+MI+ 
Sbjct: 330 AFMSSLIRSREVQSALMLMDEMEEEGIGHDSMTYHTMFRGLMRSNGIEGVSELYHKMIRR 389

Query: 391 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 450
            + P        +       + ++++++W Y+++ G  P   + + L+ GL + G++ + 
Sbjct: 390 NFVPKTRTIVMLMKWFCQNQQLDLSLDLWGYLIDRGYCPHGHALDLLVTGLCSHGKVKEA 449

Query: 451 RRFAEEMLNR 460
              A++ L R
Sbjct: 450 VECAKQTLER 459


>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
 gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
          Length = 729

 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/371 (21%), Positives = 165/371 (44%), Gaps = 23/371 (6%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N++++ +   G  ++  N +  +   G      T+  +  S CG+ ++ E    F  M+
Sbjct: 235 YNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMA 294

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD--------PDGDSFAILLEG 226
            +    D V  N++++++C+Q          ++R  K+VD        PD  +++ +L+G
Sbjct: 295 SNKCAPDEVTFNTIVTSLCQQG--------LVDRAIKVVDHMSEHGCIPDIVTYSSILDG 346

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
               G V++A +    + + +   P+  +AY T L  L   +Q + A + +  M   +C 
Sbjct: 347 LCDVGRVDDAVELLSRL-KSYGCKPD-TIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCP 404

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346
           P    F+  +  L +      A+++ + M   G N  P+++ YN++I  LCN   +D+  
Sbjct: 405 PDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCN--PDIVTYNSIIDGLCNERCIDDAM 462

Query: 347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406
                +  +G  PD +T+N + + L    R  + E+    M+ ++  P      T IT L
Sbjct: 463 ELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSL 522

Query: 407 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR--ILI 464
                   AIE    + ENG +P +++ N ++  L   G+  +  +    M N    ++ 
Sbjct: 523 CQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGMTNGTPDLIT 582

Query: 465 YEVTMHKLKKA 475
           Y   +  + KA
Sbjct: 583 YNTVISNITKA 593



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 131/284 (46%), Gaps = 24/284 (8%)

Query: 182 VVAVNSLLSAICR--QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKT 239
           VV  N L+  +C   +     R    L     +V     ++  ++ G+ + G +E+A + 
Sbjct: 98  VVPCNILIKRLCSGGRVADAERVFATLGASATVV-----TYNTMVNGYCRAGRIEDARRL 152

Query: 240 FGEMV---ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
              M    + F +NP             +RG+ V +AL     M    C P++  +S  L
Sbjct: 153 ISGMPFPPDTFTFNP-------LIRALCVRGR-VPDALAVFDDMLHRGCSPSVVTYSILL 204

Query: 297 DILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG 356
           D   K +    A+ L D M   G    P+++ YN +I  +CN  DVD        +  HG
Sbjct: 205 DATCKASGYRQAMVLLDEMRAKGCE--PDIVTYNVLINAMCNEGDVDEALNILSDLPSHG 262

Query: 357 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 416
             PD++TY  + + L  ++R  EVE+ F EM  N+  P  +   T +T L      + AI
Sbjct: 263 CKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAI 322

Query: 417 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           ++ +++ E+G +P   + + +L GL ++GR+ D    A E+L+R
Sbjct: 323 KVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDD----AVELLSR 362



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 150/348 (43%), Gaps = 7/348 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +N ++  L   GR          M   G   S+ T++ + D+ C A  Y +A++  D 
Sbjct: 163 FTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQAMVLLDE 222

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEG 231
           M   G E D+V  N L++A+C  E     AL  L+ +      PD  ++  +L+      
Sbjct: 223 MRAKGCEPDIVTYNVLINAMC-NEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSE 281

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
             +E  + F EM    +  P+ V  + T + +L +   VD A+K +  M    C P +  
Sbjct: 282 RWKEVEELFAEMASN-KCAPDEV-TFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVT 339

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           +S+ LD L  +     AV+L   +   G    P+ I Y  V+  LC+ +  ++      +
Sbjct: 340 YSSILDGLCDVGRVDDAVELLSRLKSYGCK--PDTIAYTTVLKGLCSIEQWEHAEELMAE 397

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           MV     PD +T+N +   L +   V    K   +M +N   P  +   + I  L +   
Sbjct: 398 MVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERC 457

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
            + A+E+ + +   G  P   + N LL GL ++ R  D  +    M++
Sbjct: 458 IDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMH 505



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 84/389 (21%), Positives = 158/389 (40%), Gaps = 17/389 (4%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKY 163
           +G+   L     N+++  L   GR   + +A RV    G   ++ T+ ++ + YC AG+ 
Sbjct: 90  SGKCLPLPVVPCNILIKRLCSGGR---VADAERVFATLGASATVVTYNTMVNGYCRAGRI 146

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
           ++A     ++S      D    N L+ A+C +         F + + +   P   +++IL
Sbjct: 147 EDA---RRLISGMPFPPDTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSIL 203

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           L+   K     +A     EM  R +     ++ Y   +  +     VDEAL  L  +   
Sbjct: 204 LDATCKASGYRQAMVLLDEM--RAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSH 261

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFN-LMPNLIMYNAVIGLLCNNDDV 342
            C P    ++    +L  L  S    ++ ++   +  N   P+ + +N ++  LC    V
Sbjct: 262 GCKPDAVTYT---PVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLV 318

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
           D   +  D M  HG  PD +TY+ I + L    RV +  +    +     +P  +   T 
Sbjct: 319 DRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTV 378

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
           +  L   ++ E A E+   ++ +   P E + N ++  L   G +    +  E+M     
Sbjct: 379 LKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGC 438

Query: 463 LIYEVTMHKLKKAFYNESRSMRDIFDSLE 491
               VT + +     NE    R I D++E
Sbjct: 439 NPDIVTYNSIIDGLCNE----RCIDDAME 463



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/280 (23%), Positives = 115/280 (41%), Gaps = 7/280 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++  L + G  ++    V  M E+G    + T+ SI D  C     D+A+     + 
Sbjct: 410 FNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQ 469

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
            +G + D+V  N+LL  +C  +         +N +     PD  +F  ++    ++G + 
Sbjct: 470 SYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLL 529

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           +A +T   M E      +    Y   +  L++  +  EALK L  M   N  P L  ++ 
Sbjct: 530 QAIETLKIMAENGCIPNQST--YNIVVDALLKAGKTQEALKLLSGMT--NGTPDLITYNT 585

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
            +  + K      A+ L  +MV  G  L P+ I Y ++   +C  D  D   R   ++  
Sbjct: 586 VISNITKAGKMEEALDLLRVMVSNG--LSPDTITYRSLAYGICREDGTDRAIRMLCRLQD 643

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
            G  PD+  YN I     +N R       F  M+ +   P
Sbjct: 644 MGLSPDATFYNDILLGFCQNWRTDIAIDCFAHMVSSGCMP 683


>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
          Length = 742

 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 95/426 (22%), Positives = 172/426 (40%), Gaps = 56/426 (13%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAV--- 167
            P  +  ++  LG  G  + M   V  M+ +G  + L    S  DSY G   +D+AV   
Sbjct: 73  GPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLGVVHSFLDSYEGQQLFDDAVDLI 132

Query: 168 ----------------------------------MSFDVMSMHGVEQDVVAVNSLLSAIC 193
                                               +  M   G++ DVV  N+L+ A+C
Sbjct: 133 LNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALC 192

Query: 194 RQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH 253
           R     +  L       + V PD  +F  L++G+ +EG++E A +    M+E        
Sbjct: 193 RAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEM------G 246

Query: 254 VLAYETFLITLIRG----KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV 309
             A +  +  LI G     +V++AL +++    +   P    ++  ++ L + +   HA+
Sbjct: 247 CSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHAL 306

Query: 310 QLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFE 369
           ++ D+MV  G +  P++  YN V+  LC N  ++      +QMV  G  PD  T+N +  
Sbjct: 307 KVMDVMVQEGHD--PDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIA 364

Query: 370 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
            L    R+ E      ++      P        I  L    +P +A+ ++  +  +G  P
Sbjct: 365 ALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTP 424

Query: 430 LEASANELLVGLRNLGRLSDVRRFAEEMLN----RRILIYEVTMHKLKKAFYNESRSMRD 485
            E + N L+  L +LG+L       ++M +    R  + Y   +  L K    E     +
Sbjct: 425 DEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIE--EAEE 482

Query: 486 IFDSLE 491
           +FD ++
Sbjct: 483 VFDQMD 488



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 151/344 (43%), Gaps = 7/344 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N  V+ L +N         + VM ++G    + T+  + +  C  G+ +EA    + M 
Sbjct: 289 YNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMV 348

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNV 233
             G   D+   N+L++A+C   N+   AL+   +V  K V PD  +F IL+    K G+ 
Sbjct: 349 DRGCLPDITTFNTLIAALC-TGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDP 407

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
             A + F EM +     P+ V  Y T +  L    ++ +AL  L+ M+   C  +   ++
Sbjct: 408 HLALRLFEEM-KNSGCTPDEV-TYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYN 465

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +D L K      A +++D M   G +   N I +N +I  LC +  +D+ F   +QM+
Sbjct: 466 TIIDGLCKKMRIEEAEEVFDQMDLQGIS--RNAITFNTLIDGLCKDKKIDDAFGLINQMI 523

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G  P+++TYN I     K   + +       M  N ++   +   T I  L  A   +
Sbjct: 524 SEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQ 583

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           +A+++   +   G+ P   + N +L  L     + D      EM
Sbjct: 584 VALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREM 627



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 145/350 (41%), Gaps = 8/350 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +N++V+ L KNG+ E+    +  M + G L  + TF ++  + C   + +EA+     
Sbjct: 322 FTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQ 381

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEG 231
           +++ GV  DV   N L++A+C+       AL     +K     PD  ++  L++     G
Sbjct: 382 VTVKGVSPDVYTFNILINALCKV-GDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLG 440

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            + +A     +M       P   + Y T +  L +  +++EA +    M  +        
Sbjct: 441 KLGKALDLLKDM--ESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAIT 498

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           F+  +D L K      A  L + M+  G  L PN I YN+++   C   D+       + 
Sbjct: 499 FNTLIDGLCKDKKIDDAFGLINQMISEG--LQPNNITYNSILTHYCKQGDIKKAADILET 556

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M  +G   D +TY  +   L K  R     K    M     +PTP      +  L   + 
Sbjct: 557 MTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNN 616

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGL-RNLGRLSDVRRFAEEMLNR 460
              A+ ++  + E G  P   +   +  GL R  G + +   F  EM+++
Sbjct: 617 IRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDK 666



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 81/397 (20%), Positives = 158/397 (39%), Gaps = 15/397 (3%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP----TFASIFDS 156
           +     RG +     +N ++  L    R  Q+  AV +++E     +     TF ++   
Sbjct: 169 YSEMGARGIKPDVVTFNTLMKALC---RAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQG 225

Query: 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDP 215
           +   G  + A+     M   G     V VN L++  C+   +   AL ++ + +    +P
Sbjct: 226 FVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKL-GRVEDALGYIQQEIADGFEP 284

Query: 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK 275
           D  ++   + G  +  +V  A K    MV+  E +   V  Y   +  L +  Q++EA  
Sbjct: 285 DQITYNTFVNGLCQNDHVGHALKVMDVMVQ--EGHDPDVFTYNIVVNCLCKNGQLEEAKG 342

Query: 276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGL 335
            L  M    C P +  F+  +  L   N    A+ L   +   G +  P++  +N +I  
Sbjct: 343 ILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVS--PDVYTFNILINA 400

Query: 336 LCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 395
           LC   D     R F++M   G  PD +TYN + + L    ++ +      +M       +
Sbjct: 401 LCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRS 460

Query: 396 PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 455
            +   T I  L      E A E+++ +   GI     + N L+ GL    ++ D      
Sbjct: 461 TITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLIN 520

Query: 456 EMLNRRILIYEVTMHKLKKAFYNES--RSMRDIFDSL 490
           +M++  +    +T + +   +  +   +   DI +++
Sbjct: 521 QMISEGLQPNNITYNSILTHYCKQGDIKKAADILETM 557


>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 906

 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/358 (21%), Positives = 158/358 (44%), Gaps = 4/358 (1%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK 162
           R   +G   S  A+N ++  LG+ G+ E+       M++D   +L T+  + D  C AG+
Sbjct: 368 RQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMRQDAAPNLTTYNILIDMLCKAGE 427

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
            + A+   D M   G+  +++ VN ++  +C+ +        FL    K+  PD  +F  
Sbjct: 428 LEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEACSIFLGLDHKVCSPDSRTFCS 487

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L++G  + G V++A   + +M++  +    +V+ Y + +    +  + ++  K  + M  
Sbjct: 488 LIDGLGRRGRVDDAYSLYEKMLDSDQI--PNVVVYTSLIQNFFKCGRKEDGHKIYKEMVH 545

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
             C P L   ++ +D + K  +      L++ +   G  L+P++  Y+ +I  L      
Sbjct: 546 RGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQG--LVPDVRSYSILIHGLVKAGFS 603

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
              ++ F +M   G   D L YN + +   K+ +V +  +   EM     QPT +   + 
Sbjct: 604 RETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSV 663

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           +  L   D  + A  ++      G+       + L+ G   +GR+ +     EE++ +
Sbjct: 664 VDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQK 721



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/335 (23%), Positives = 159/335 (47%), Gaps = 7/335 (2%)

Query: 119 MVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           ++D LG+ GR +  ++   +++  D + ++  + S+  ++   G+ ++    +  M   G
Sbjct: 488 LIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRG 547

Query: 178 VEQDVVAVNSLLSAICRQ-ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA 236
              D++ +NS +  + +  E +  RAL    + + +V PD  S++IL+ G  K G   E 
Sbjct: 548 CSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLV-PDVRSYSILIHGLVKAGFSRET 606

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
            K F EM E  +     VLAY T +    +  +VD+A + L  MK +   PT+  + + +
Sbjct: 607 YKLFYEMKE--QGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVV 664

Query: 297 DILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG 356
           D L K++    A  L++    IG +L  N+++Y+++I        +D  +   ++++  G
Sbjct: 665 DGLAKIDRLDEAYMLFEEAKSIGVDL--NVVIYSSLIDGFGKVGRIDEAYLILEELMQKG 722

Query: 357 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 416
             P+S T+N + + L+K + + E +  F  M   +  P  +  +  I  L    +   A 
Sbjct: 723 LTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKNLKCSPNAMTYSIMINGLCMIRKFNKAF 782

Query: 417 EIWNYILENGILPLEASANELLVGLRNLGRLSDVR 451
             W  + + G+ P   +   ++ GL   G + + R
Sbjct: 783 VFWQEMQKQGLKPNNITYTTMIAGLAKAGNVMEAR 817



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 134/319 (42%), Gaps = 21/319 (6%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKY 163
           + Q L P   ++++++  L K G   + +     MKE G+ L +  + ++ D +C +GK 
Sbjct: 579 KAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKV 638

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAI 222
           D+A    + M   G++  VV   S++  + + + +   A       K I VD +   ++ 
Sbjct: 639 DKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKID-RLDEAYMLFEEAKSIGVDLNVVIYSS 697

Query: 223 LLEGWEKEGNVEEANKTFGEMVER------FEWNPEHVLAYETFLITLIRGKQVDEALKF 276
           L++G+ K G ++EA     E++++      + WN          L  L++ +++DEA   
Sbjct: 698 LIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWN--------CLLDALVKAEEIDEAQVC 749

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLL 336
            + MK   C P    +S  ++ L  +     A   W  M   G  L PN I Y  +I  L
Sbjct: 750 FQNMKNLKCSPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQG--LKPNNITYTTMIAGL 807

Query: 337 CNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 396
               +V      FD+    G  PDS  YN + E L    +  +    F E      +   
Sbjct: 808 AKAGNVMEARGLFDRFKASGGVPDSACYNAMIEGLSSANKAMDAYIVFEETRLKGCRVNS 867

Query: 397 LNCATAITMLLDADEPEIA 415
             C   +  L  AD  E A
Sbjct: 868 KTCVVLLDALHKADCLEQA 886



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 83/380 (21%), Positives = 158/380 (41%), Gaps = 14/380 (3%)

Query: 56  ICEILAHAS-SDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRG--QRLS 112
           +C +L +     D+E AL     +  P+++  V++   D  + A  +FRW  R   Q   
Sbjct: 74  LCGVLENGLWGPDVEEALNVFDEMSQPEVIVGVMKRLKDV-NVAFQYFRWVERKTQQAHC 132

Query: 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFD 171
           P  +N  + V+ +    + +   +  M   G  LS      +  S+  + K  EA    +
Sbjct: 133 PEVYNAFLMVMARTRNLDYLEQILEEMSVAGFGLSNHVSVELVASFVKSHKLKEAFGVIE 192

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKE 230
           +M          A  +L+ A+    N+    L   +++++I  + +   F  L+  + +E
Sbjct: 193 MMRKFKFRPAFSAYTTLIGAL-SAANRPDPMLTLFHQMQEIGYEANVHLFTTLVRVFARE 251

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           G ++ A     EM     +  + VL Y   +    +  +VD A KF   MK +   P   
Sbjct: 252 GRIDAALSLLDEMKSN-SFTADLVL-YNVCIDCFGKVGKVDMAWKFFHEMKAQGLVPDDV 309

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNL-MPNLIMYNAVIGLLCNNDDVDNVFRFF 349
            ++  + +L K      AV+L++    +  N  +P +  YN +I    +    D  +   
Sbjct: 310 TYTTLIGVLCKARRLDEAVELFE---ELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSLL 366

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 409
           ++    G  P  + YN I  CL +  +V E  +  H+ ++ +  P        I ML  A
Sbjct: 367 ERQKRKGCIPSVIAYNCILTCLGRKGKVEEALR-IHDEMRQDAAPNLTTYNILIDMLCKA 425

Query: 410 DEPEIAIEIWNYILENGILP 429
            E E A+++ + + E G+ P
Sbjct: 426 GELEAALKVQDTMKEAGLFP 445



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/196 (19%), Positives = 82/196 (41%), Gaps = 2/196 (1%)

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG 319
            + + ++  ++ EA   + +M+     P    ++  +  L   N     + L+  M  IG
Sbjct: 174 LVASFVKSHKLKEAFGVIEMMRKFKFRPAFSAYTTLIGALSAANRPDPMLTLFHQMQEIG 233

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
           +    N+ ++  ++ +      +D      D+M  +    D + YN+  +C  K  +V  
Sbjct: 234 YE--ANVHLFTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDM 291

Query: 380 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 439
             KFFHEM      P  +   T I +L  A   + A+E++  +  N  +P   + N +++
Sbjct: 292 AWKFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIM 351

Query: 440 GLRNLGRLSDVRRFAE 455
           G  + G+  +     E
Sbjct: 352 GYGSAGKFDEAYSLLE 367


>gi|147801213|emb|CAN73209.1| hypothetical protein VITISV_002838 [Vitis vinifera]
          Length = 1024

 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 109/410 (26%), Positives = 179/410 (43%), Gaps = 39/410 (9%)

Query: 65  SDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA-GRGQRLSPYAWNLMVDVL 123
           S +++S+LA      +   V + LQL   +P+ A+ FFRW   +G   +  ++ LM+++L
Sbjct: 172 SHELQSSLAELAPSLSKTTVLQTLQL-IRTPAKALHFFRWVEAKGFTHNEQSYFLMIEIL 230

Query: 124 GKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDV 182
           G++       N V  + K+ G               GA    E++  F  M   GV   V
Sbjct: 231 GRSRNLNAARNFVFSIEKKSG---------------GA----ESIKVFKTMKEIGVSPSV 271

Query: 183 VAVNSLLSAICRQENQTSRALEFLNRVKKI--VDPDGDSFAILLEGWEKEGNVEEANKTF 240
           V  NSLLS + ++  +TS A +  + +     V PD  +F IL+ G+     V+E    F
Sbjct: 272 VTFNSLLSIVLKR-GRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFF 330

Query: 241 GEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM--KGENCFPTLKFFSNALDI 298
            EM  RF+ +P+ V+ Y T +  L R  +V  A   ++ M  K  N  P +  ++  +  
Sbjct: 331 KEM-SRFKCDPD-VVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRG 388

Query: 299 LVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAF 358
                D   A+ L   MV  G  L PN I YN +I  LC    +D +    + MV  G F
Sbjct: 389 YCMKQDMAEALSLLAEMVSRG--LKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGF 446

Query: 359 -PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 417
            PD+ T N + +      ++ E    F +M +   QP     +  +  L    +   A E
Sbjct: 447 IPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEE 506

Query: 418 IWNYILENGIL-------PLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
            ++ + E  IL       PL A+ N +   L + G+     R   +++ R
Sbjct: 507 FFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKR 556



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 69/380 (18%), Positives = 165/380 (43%), Gaps = 36/380 (9%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG--VLSLPTFASIFDSYCGAGKYD 164
           RG + +   +N ++  L +  + +++   +  M  DG  +    T  ++  ++C  GK +
Sbjct: 408 RGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLE 467

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV--KKIV------DPD 216
           EA   F+ MS   V+ D    + L+ ++C Q     RA EF + +  K+I+       P 
Sbjct: 468 EAFSVFEKMSELRVQPDSATYSVLVRSLC-QRGDFRRAEEFFDELAEKEILLHDVGCKPL 526

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
             ++  + E     G  ++A + F ++++R   +P    +Y+T ++   R    +     
Sbjct: 527 VAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDPP---SYKTLILGHCREGTPEAGFDL 583

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLL 336
           L +M   +  P  + +   +D L+K  D   A +  + M  +  + +P   ++++++  L
Sbjct: 584 LVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKM--LKSSHLPTTAIFHSILAAL 641

Query: 337 CNND-----DVDNVFRFFDQMVFHGAFPDS--LTYNMIFE------------CLIKNKRV 377
              +     ++D +     ++++     D   +T  +++E             L +++++
Sbjct: 642 VEKERRIRQNID-LSTHTVRLLYKSGLQDKAFMTIGLLYENGYLVKMEELVSFLCQSRKL 700

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 437
            E +K     ++         C+T I+ L  A +   A  ++  ++E G+        +L
Sbjct: 701 LEAQKMLLFSLEKRQSVDIDMCSTVISGLCKAHKVSEAFALYYELVEKGMQHRLTCQEDL 760

Query: 438 LVGLRNLGRLSDVRRFAEEM 457
            + L   GRL++ +  +++M
Sbjct: 761 RISLEAEGRLNEAKFVSKKM 780


>gi|147789025|emb|CAN75780.1| hypothetical protein VITISV_012424 [Vitis vinifera]
          Length = 515

 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/370 (21%), Positives = 171/370 (46%), Gaps = 12/370 (3%)

Query: 98  AVDFFRWAGRGQRLSPY--AWNLMVDVLGKNGRFEQMWNAVRVMKED--GVLSLPTFASI 153
           A +FF+++ +     P   A+   + +L +   F++ W  +  +++    +L+L + + +
Sbjct: 95  AFEFFKFSLQHSEFCPSSDAFEKTLHILTRMRYFDKAWELMEEIQQTHPSLLTLKSMSIM 154

Query: 154 FDSYCGAGKYDEAVMSFDVMSMH---GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK 210
                    Y++ + +F  M  +   G E      N LL A C Q  Q   A    +++ 
Sbjct: 155 LSRIAKFQSYEDTLEAFGRMEKNVFFGREFGANEFNVLLRAFCTQR-QMKEARSVFHKMH 213

Query: 211 KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270
               P+  +  ILL G+++ G+V      + EM+ R  + P  V  Y   +    +    
Sbjct: 214 SRFSPNTKTMNILLLGFKESGDVTAVELFYHEMIRR-GFKPNSV-TYNIRIDAYCKKGCF 271

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYN 330
            + L+ L  M+  NC PTL+  +  +       + + A +L++  + I  NL P++ +YN
Sbjct: 272 GDGLRLLEEMEKANCPPTLETITTLIHGAGVAQNISRARELFN-EISIR-NLQPDIGVYN 329

Query: 331 AVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 390
           A +  L  + +V +     D+M   G   DS+TY+ +F  L+++  +  V + +H+MI+ 
Sbjct: 330 AFMSSLIRSREVQSALMLMDEMEEEGIGHDSMTYHTMFRGLMRSNGIEGVSELYHKMIRR 389

Query: 391 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 450
            + P        +       + ++++++W Y+++ G  P   + + L+ GL + G++ + 
Sbjct: 390 NFVPKTRTIVMLMKWFCQNQQLDLSLDLWGYLIDRGYCPHGHALDLLVTGLCSHGKVKEA 449

Query: 451 RRFAEEMLNR 460
              A++ L R
Sbjct: 450 VECAKQTLER 459


>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Vitis vinifera]
          Length = 898

 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/358 (22%), Positives = 154/358 (43%), Gaps = 4/358 (1%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK 162
           R   +G   S  A+N ++  LGK  R E+       MK D V ++PT+  + D  C  GK
Sbjct: 360 RQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDAVPNVPTYNILIDMLCREGK 419

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
            + A+   D M   G+  +V+ VN ++  +C+ +        F     K+  P+  +F+ 
Sbjct: 420 LNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSS 479

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L++G  K G V++A   + +M++    +    + Y + + +  +  + ++  K  + M  
Sbjct: 480 LIDGLGKCGRVDDAYSLYEKMLDC--GHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVH 537

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
             C P L   +  +D + K  ++     L+  +   GF  +P+   Y+ +I  L      
Sbjct: 538 TGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGF--IPDARSYSILIHGLVKAGLA 595

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
           +  +  F  M   G   D+  YN + +   K+ +V++  +   EM      PT +   + 
Sbjct: 596 NETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSV 655

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           I  L   D  + A  ++     NGI       + L+ G   +GR+ +     EE++ +
Sbjct: 656 IDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQK 713



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 82/373 (21%), Positives = 154/373 (41%), Gaps = 38/373 (10%)

Query: 119 MVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           ++D LGK GR +  ++    M + G V     + S+  S+   G+ ++    +  M   G
Sbjct: 480 LIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTG 539

Query: 178 VEQDVVAVNSLLSAICRQ-ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA 236
              D+  +N+ +  + +  E +  RAL F         PD  S++IL+ G  K G   E 
Sbjct: 540 CSPDLTLINTYMDCVFKAGETEKGRAL-FREINAHGFIPDARSYSILIHGLVKAGLANET 598

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
            + F  M E+      H  AY   +    +  +V++A + L  MK +   PT+  + + +
Sbjct: 599 YELFYAMKEQGCVLDTH--AYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVI 656

Query: 297 DILVKLNDSTHAVQLWD----------------IMVGIGF-----------------NLM 323
           D L K++    A  L++                ++ G G                   L 
Sbjct: 657 DGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLT 716

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           PN+  +N ++  L   ++++     F  M      P+ +TY+++   L + ++ ++   F
Sbjct: 717 PNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVF 776

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
           + EM K   +P  +   T I+ L  A     A  +++    NG +P  AS N ++ GL +
Sbjct: 777 WQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGLSS 836

Query: 444 LGRLSDVRRFAEE 456
             +  D     EE
Sbjct: 837 ANKAMDAYALFEE 849



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 120/287 (41%), Gaps = 40/287 (13%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCG 159
           F+    +G  L  +A+N ++D   K+G+  + +  +  MK  G   ++ T+ S+ D    
Sbjct: 602 FYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAK 661

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
             + DEA M F+    +G++ +VV  +S                                
Sbjct: 662 IDRLDEAYMLFEEAKSNGIKLNVVVYSS-------------------------------- 689

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
              L++G+ K G ++EA     E++++    P +V  +   L  L++ ++++EAL   + 
Sbjct: 690 ---LIDGFGKVGRIDEAYLIMEELMQK-GLTP-NVYTWNCLLDALVKAEEINEALICFQS 744

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
           MK   C P    +S  ++ L ++     A   W  M  +G  L PN I Y  +I  L   
Sbjct: 745 MKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLG--LKPNTITYTTMISGLAKA 802

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 386
            ++      F +   +G  PDS +YN + E L    +  +    F E
Sbjct: 803 GNILEASGLFSRFKANGGIPDSASYNAMIEGLSSANKAMDAYALFEE 849



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 96/425 (22%), Positives = 170/425 (40%), Gaps = 18/425 (4%)

Query: 56  ICEILAHAS-SDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL--S 112
           +C IL        +E++L+  G  P P+LV  VL+   D+ ++AV++F+WA +       
Sbjct: 66  VCCILESGPWGPTLENSLSALGEKPLPELVIGVLKRLKDA-NTAVNYFQWAEKQTEKVHC 124

Query: 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-----LSLPTFASIFDSYCGAGKYDEAV 167
           P A+N ++ V+ +N  F+ +   +  M   G      +S+   A+   S     K  EA 
Sbjct: 125 PEAYNSLLMVMARNTEFDHLERILEEMSLSGFGPSSNISIELVANCVKSR----KLREAF 180

Query: 168 MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW 227
                M          A   L+ A+          + F    +   + +   F  L+  +
Sbjct: 181 DIIQTMRKFKFRPAFSAYTILIGALSEVREPDPMLILFHQMQELGYEVNVHLFTTLIRVF 240

Query: 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
            +EG V+ A     EM  +       ++ Y   +    +  +VD + KF   MK     P
Sbjct: 241 AREGRVDAALSLLDEM--KSNSLDADIVLYNVCIDCFGKAGKVDMSWKFFHEMKSHGLMP 298

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFR 347
               +++ + +L K N    AV+L++ +       +P    YN +I    +    D  + 
Sbjct: 299 DDVTYTSMIGVLCKANRLDEAVELFEQLEQ--NRKVPCAYAYNTMIMGYGSAGKFDEAYG 356

Query: 348 FFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 407
             ++    G+ P  + YN I  CL K +RV E  + F EM K +  P        I ML 
Sbjct: 357 LLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEM-KRDAVPNVPTYNILIDMLC 415

Query: 408 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEV 467
              +   A+EI + +   G+ P   + N ++  L    +L +     E M ++      V
Sbjct: 416 REGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAV 475

Query: 468 TMHKL 472
           T   L
Sbjct: 476 TFSSL 480


>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
 gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
          Length = 724

 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 147/311 (47%), Gaps = 9/311 (2%)

Query: 150 FASIFDSYCGAGKYDEAV-MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           F ++ + +   G+ +EA    +D M  +G   DV   ++L++ +C++      ALE +N 
Sbjct: 349 FNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKK-GLFGSALELVND 407

Query: 209 V-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIR 266
           +  K   P+ +++ IL++G+ K+G +EEA     EM+ + F  N    + Y   +  L +
Sbjct: 408 MDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLN---TVGYNALISALCK 464

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNL 326
             ++ EAL     M  + C P +  F++ +  L ++++   A+ L+  MV  G  ++ N 
Sbjct: 465 HGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEG--VIANS 522

Query: 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 386
           + +N +I       ++    +  + M+F G   D +TYN + + L K   V +    F E
Sbjct: 523 VTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEE 582

Query: 387 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 446
           MI+    P+ + C   I     A +   A+E    ++  G  P   + N L+ GL   GR
Sbjct: 583 MIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGR 642

Query: 447 LSDVRRFAEEM 457
           + +     E++
Sbjct: 643 IQEALNLFEKL 653



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 97/424 (22%), Positives = 182/424 (42%), Gaps = 17/424 (4%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAG--RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVR 137
           TP  + ++L+L  D  +S ++ F+WAG  +G   S   + L++D LG    F+ +   + 
Sbjct: 70  TPFQLCKLLELPLDVETS-MEIFKWAGAQKGYCHSFSVYYLLIDKLGAAAGFKVIDRLLL 128

Query: 138 VMKEDGVLSLPT-FASIFDSYCGAGKYDEAV-MSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
            MKE+G++   + F  I   Y  AG   +A  +  D+  ++  E    + N +L  +   
Sbjct: 129 QMKEEGIVFRESLFILIMKYYGRAGLPGQATRLLLDMKGVYCCEPSFRSYNVVLDVLVVG 188

Query: 196 ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
              +  +  F + + K V P+  +F ++++       V+ A     +M +       + +
Sbjct: 189 NCPSVASNVFYDMLSKGVSPNDYTFGLVMKALCMVNEVDNACLLLRDMTK--HGCVPNSM 246

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
            Y+T +  L +  +VDEALK L  M    C P +  F+  +    +LN      +L D M
Sbjct: 247 IYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFCRLNRVLEGAKLVDRM 306

Query: 316 VGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 375
           +  GF   PN + Y  ++  LC    +D       ++      P+ + +N +    ++N 
Sbjct: 307 ILKGFT--PNDMTYGYLMHGLCKTCRIDEAQALLSKV----PGPNVVHFNTLVNGFVRNG 360

Query: 376 RVHEVEKF-FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 434
           R++E   F + +MI N + P     +T +  L        A+E+ N +   G  P   + 
Sbjct: 361 RLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTY 420

Query: 435 NELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLER 492
             L+ G    G+L +      EML +   +  V  + L  A     +     D+F  +  
Sbjct: 421 TILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSS 480

Query: 493 R-CK 495
           + CK
Sbjct: 481 KGCK 484



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 88/414 (21%), Positives = 177/414 (42%), Gaps = 14/414 (3%)

Query: 67  DIESALACTGIIPTPDLVHEVLQLSYDSPSSAVD-FFRWAGRGQRLSPYAWNLMVDVLGK 125
           D++    C     + ++V +VL +  + PS A + F+    +G   + Y + L++  L  
Sbjct: 164 DMKGVYCCEPSFRSYNVVLDVLVVG-NCPSVASNVFYDMLSKGVSPNDYTFGLVMKALCM 222

Query: 126 NGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVA 184
               +     +R M + G + +   + ++ D+     + DEA+   + M + G   DV  
Sbjct: 223 VNEVDNACLLLRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNT 282

Query: 185 VNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
            N+++   CR  N+     + ++R + K   P+  ++  L+ G  K   ++EA     ++
Sbjct: 283 FNTVIYGFCRL-NRVLEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQALLSKV 341

Query: 244 VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR-VMKGENCFPTLKFFSNALDILVKL 302
                    +V+ + T +   +R  +++EA  F+   M      P +  FS  ++ L K 
Sbjct: 342 ------PGPNVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKK 395

Query: 303 NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSL 362
                A++L + M   G    PNL  Y  +I   C    ++       +M+  G   +++
Sbjct: 396 GLFGSALELVNDMDAKGCK--PNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTV 453

Query: 363 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 422
            YN +   L K+ ++HE    F EM     +P      + I  L   DE E A+ ++  +
Sbjct: 454 GYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDM 513

Query: 423 LENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
           +  G++    + N L+      G + +  +   +ML R   + E+T + L KA 
Sbjct: 514 VLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKAL 567


>gi|115446945|ref|NP_001047252.1| Os02g0582300 [Oryza sativa Japonica Group]
 gi|50253069|dbj|BAD29317.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536783|dbj|BAF09166.1| Os02g0582300 [Oryza sativa Japonica Group]
          Length = 845

 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/352 (22%), Positives = 152/352 (43%), Gaps = 42/352 (11%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G R S  A+  +VD   +  + ++    ++ M E G+   + T  ++ ++YC  G+  +A
Sbjct: 284 GWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDA 343

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLE 225
           +   ++M + G + +V   N+L+   C  E +  +A+  LN+++   V+PD  ++ +L+ 
Sbjct: 344 LRVLELMKLRGCKPNVWTYNALVQGFC-NEGKVHKAMTLLNKMRACGVNPDAVTYNLLIR 402

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G   +G++E                                      A + LR+M+G+  
Sbjct: 403 GQCIDGHIES-------------------------------------AFRLLRLMEGDGL 425

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
                 ++  ++ L K   +  A  L+D +   G    PN + +N++I  LC +   D  
Sbjct: 426 IADQYTYNALINALCKDGRTDQACSLFDSLETRGIK--PNAVTFNSLINGLCKSGKADIA 483

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
           ++F ++MV  G  PD+ TY+   E L K K   E   F  EM++ + +P+ +N    I  
Sbjct: 484 WKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHK 543

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           LL      +    W  ++ +G  P   +    +      GRL++      EM
Sbjct: 544 LLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEM 595



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 128/311 (41%), Gaps = 8/311 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF S+   YC   + D A   FD M + G  QDVV+  +L+  +C +  +   A+E    
Sbjct: 190 TFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLC-EAGRIDEAVELFGE 248

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           + +   PD   +A L++G       EE       M E   W P    AY   +    R +
Sbjct: 249 MDQ---PDMHMYAALVKGLCNAERGEEGLLMLRRMKE-LGWRPS-TRAYAAVVDFRCRER 303

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           +  EA + L+ M  +   P +   +  ++   K    + A+++ ++M   G    PN+  
Sbjct: 304 KAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCK--PNVWT 361

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           YNA++   CN   V       ++M   G  PD++TYN++      +  +    +    M 
Sbjct: 362 YNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLME 421

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
            +            I  L      + A  +++ +   GI P   + N L+ GL   G+  
Sbjct: 422 GDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKAD 481

Query: 449 DVRRFAEEMLN 459
              +F E+M++
Sbjct: 482 IAWKFLEKMVS 492



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/336 (21%), Positives = 131/336 (38%), Gaps = 10/336 (2%)

Query: 148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN 207
           PT+ ++  S C       A+    +M   G   D    NSL+   CR  NQ   A +  +
Sbjct: 154 PTYNAVIRSLCRRADLARALRYLSLMVRSGWRPDAYTFNSLIVGYCRT-NQVDVARDLFD 212

Query: 208 RVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
           ++  +    D  S+A L+EG  + G ++EA + FGEM      +   +  Y   +  L  
Sbjct: 213 KMPLRGFAQDVVSYATLIEGLCEAGRIDEAVELFGEM------DQPDMHMYAALVKGLCN 266

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNL 326
            ++ +E L  LR MK     P+ + ++  +D   +   +  A ++   M   G  L P +
Sbjct: 267 AERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKG--LAPCV 324

Query: 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 386
           +   AVI   C    + +  R  + M   G  P+  TYN + +      +VH+     ++
Sbjct: 325 VTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNK 384

Query: 387 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 446
           M      P  +     I         E A  +   +  +G++  + + N L+  L   GR
Sbjct: 385 MRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGR 444

Query: 447 LSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 482
                   + +  R I    VT + L        ++
Sbjct: 445 TDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKA 480



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 79/353 (22%), Positives = 144/353 (40%), Gaps = 20/353 (5%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
           G G     Y +N +++ L K+GR +Q  +    ++  G+  +  TF S+ +  C +GK D
Sbjct: 422 GDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKAD 481

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAIL 223
            A    + M   G   D    +S +  +C+ +  +   L F+   ++K V P   ++ I+
Sbjct: 482 IAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKG-SQEGLSFIGEMLQKDVKPSTVNYTIV 540

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           +    KE N     +T+GEMV     NP+ V+ Y T +       +++EA   L  M   
Sbjct: 541 IHKLLKERNYGLVARTWGEMVSS-GCNPD-VVTYTTSMRAYCIEGRLNEAENVLMEMSKN 598

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG--------FNLMPNLIMYNAVIGL 335
                   ++  +D    +  + HAV +   M  +         F L+ +L+    V  +
Sbjct: 599 GVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDV 658

Query: 336 L-------CNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           L           ++ +VF  FD M  +   P+S TY+ I E   ++ R  E       M 
Sbjct: 659 LPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMK 718

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 441
           ++            +T    +     A  +   ++++G +P   S   LL GL
Sbjct: 719 EDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGL 771



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 74/141 (52%), Gaps = 6/141 (4%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           ++ +++   ++GR E+  + V +MKED + L+   + ++   +C + +Y +A +    M 
Sbjct: 694 YSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMI 753

Query: 175 MHGVEQDVVAVNSLLSA-ICRQENQTSRALE-FLNRVKKIVDPDGDSFAILLEGWEKEGN 232
            HG    +++   LLS  IC  E QT +A E F+N   K   PD   + ++++G  K+G+
Sbjct: 754 QHGFIPQLMSYQHLLSGLIC--EGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGH 811

Query: 233 VEEANKTFGEMVERFEWNPEH 253
             + ++    M+ER    P H
Sbjct: 812 -SDISREMIIMLERMNCRPSH 831



 Score = 46.2 bits (108), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 53/271 (19%), Positives = 103/271 (38%), Gaps = 24/271 (8%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ +   +YC  G+ +EA      MS +GV  D +A N+L+        QT  A+  L +
Sbjct: 571 TYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHA-SIGQTDHAVSILKQ 629

Query: 209 VKKIVD-PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           +  +   P+  ++ ILL    +   VE+               P  V           + 
Sbjct: 630 MTSVASVPNQFTYFILLRHLVRMRLVEDV----------LPLTPAGVW----------KA 669

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
            ++ +      VMK     P    +S+ L+   +   +  A  L  +M     +L  N  
Sbjct: 670 IELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISL--NED 727

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
           +Y A++   C +    + +     M+ HG  P  ++Y  +   LI   +  + ++ F   
Sbjct: 728 IYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIFMNS 787

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEI 418
              ++ P  +     I  L+     +I+ E+
Sbjct: 788 RWKDYSPDEIVWKVIIDGLIKKGHSDISREM 818



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 43/97 (44%)

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           P    YNAVI  LC   D+    R+   MV  G  PD+ T+N +     +  +V      
Sbjct: 151 PTAPTYNAVIRSLCRRADLARALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDL 210

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 420
           F +M    +    ++ AT I  L +A   + A+E++ 
Sbjct: 211 FDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVELFG 247


>gi|255572834|ref|XP_002527349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533268|gb|EEF35021.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 443

 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 148/347 (42%), Gaps = 15/347 (4%)

Query: 123 LGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD 181
           L +NG  E+ +  +  M   G +  +    S+   +C  GK  +A    +++   G   D
Sbjct: 94  LVRNGELEEGFRFLESMVYRGDIPDIIPCTSLIRGFCKIGKTRKATRIMEIIEDSGAVPD 153

Query: 182 VVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFG 241
           V+  N L+S +C             + V++   P   +F IL+    ++G         G
Sbjct: 154 VITYNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKG-------LLG 206

Query: 242 EMVERFEWNPEH-----VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
             ++  E  P+H      L+Y   L    + K+++ A+++L  M    C+P +  ++  L
Sbjct: 207 RAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLL 266

Query: 297 DILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG 356
             L K      AV+L + +   G +  P LI YN VI  L      D   +  D+M   G
Sbjct: 267 TALCKDGKVDAAVELLNQLSSKGCS--PVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKG 324

Query: 357 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 416
             PD +TY+ +   L +  +V E  KFFH++     +P  +     +  L  A + + AI
Sbjct: 325 LKPDIITYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNAITYNAIMLGLCKARKTDRAI 384

Query: 417 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
           +   Y+++ G  P EAS   L+ GL   G   +      E+  R ++
Sbjct: 385 DFLAYMVQRGCKPTEASYTILIEGLAYEGLAKEALELLNELCLRGVV 431



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/230 (19%), Positives = 93/230 (40%), Gaps = 33/230 (14%)

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG- 319
           L  L+R  +++E  +FL  M      P +   ++ +    K+  +  A ++ +I+   G 
Sbjct: 91  LSKLVRNGELEEGFRFLESMVYRGDIPDIIPCTSLIRGFCKIGKTRKATRIMEIIEDSGA 150

Query: 320 ------FNLM--------------------------PNLIMYNAVIGLLCNNDDVDNVFR 347
                 +N++                          P+++ +N +I  LC    +     
Sbjct: 151 VPDVITYNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAID 210

Query: 348 FFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 407
             ++M  HG  P+SL+YN +     K K++    ++  +M      P  +   T +T L 
Sbjct: 211 VLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALC 270

Query: 408 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
              + + A+E+ N +   G  P+  + N ++ GL  +G+     +  +EM
Sbjct: 271 KDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEM 320


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 87/378 (23%), Positives = 166/378 (43%), Gaps = 8/378 (2%)

Query: 109 QRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +RL P A  +   +D   K G  E        M   GVL ++  + ++ + +C  G   E
Sbjct: 515 RRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTE 574

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A   F  +    V QDV   + L+  + R          F    +K + P+  ++  L+ 
Sbjct: 575 AFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLIS 634

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G  K+GNV++A++   EM  +   NP+ ++ Y   +  L +  +++ A      ++G   
Sbjct: 635 GSCKQGNVDKASQLLEEMCIK-GINPD-IVTYNILIDGLCKAGEIERAKNLFDDIEGRGL 692

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P    ++  +D   K  + T A QL + M+  G  + P+  +YN ++   C  +  +  
Sbjct: 693 TPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRG--VPPDAFIYNVILNFCCKEEKFEKA 750

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
              F +M+  G F  ++++N + E   K+ ++ E      EMI+ ++ P  +   + I  
Sbjct: 751 LDLFQEMLEKG-FASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDH 809

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 465
              A     A  +W  + E  ++P   +   LL G  N+G +S+V    EEM+ + I   
Sbjct: 810 NCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPD 869

Query: 466 EVTMHKLKKAFYNESRSM 483
           ++T + +  A+  E   M
Sbjct: 870 KMTYYVMIDAYCREGNVM 887



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 82/423 (19%), Positives = 167/423 (39%), Gaps = 54/423 (12%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           + ++L+P    ++++++ L + G  +     +R M  +G+  +   + ++  ++   G+ 
Sbjct: 408 KKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRV 467

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
           +E+ M  + M   G+  DV   NSL+   C+ +         +  +++ + P+  ++   
Sbjct: 468 EESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAF 527

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK----QVDEALKFLRV 279
           ++G+ K G +E A++ F EM+         VL        LI G      V EA    R 
Sbjct: 528 IDGYSKAGEMEIADRYFNEMLSC------GVLPNVGIYTALIEGHCKEGNVTEAFSVFRF 581

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
           +        ++ +S  +  L +      A  ++  +   G  L+PN   YN++I   C  
Sbjct: 582 ILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKG--LLPNAFTYNSLISGSCKQ 639

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
            +VD   +  ++M   G  PD +TYN++ + L K   +   +  F ++      P  +  
Sbjct: 640 GNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTY 699

Query: 400 ATAITMLLDADEPEIAIEIWNYILENGILP----------------------------LE 431
           A  +     +  P  A ++   +L  G+ P                            LE
Sbjct: 700 AAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLE 759

Query: 432 ------ASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTM-----HKLKKAFYNES 480
                  S N L+ G    G+L +     EEM+ ++ +   VT      H  K     E+
Sbjct: 760 KGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEA 819

Query: 481 RSM 483
           + +
Sbjct: 820 KRL 822



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 138/333 (41%), Gaps = 49/333 (14%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ ++ D +   G  ++A    D M   G+E +++  N+LL+ +C+   +  +ALE +  
Sbjct: 313 TYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKA-GKMEKALEIMQE 371

Query: 209 V-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           + +K V+PD  ++++L+EG                                       RG
Sbjct: 372 MMEKGVEPDSQTYSLLIEGH-------------------------------------CRG 394

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND--STHAVQLWDIMVGIGFNLMPN 325
           + +  A + L  MK     PT+  +S  ++ L +  +   T+A+    +M G    L PN
Sbjct: 395 QNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNG----LKPN 450

Query: 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 385
            ++Y  ++        V+      ++M   G  PD   YN +     K KR+ E   +  
Sbjct: 451 AVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLM 510

Query: 386 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
           EM++   +P        I     A E EIA   +N +L  G+LP       L+ G    G
Sbjct: 511 EMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEG 570

Query: 446 RLSDVRRFAEEMLNRRIL----IYEVTMHKLKK 474
            +++       +L+RR+L     Y V +H L +
Sbjct: 571 NVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSR 603



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 128/314 (40%), Gaps = 29/314 (9%)

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQEN------------QTSRAL-EFLNRVKKIVD-- 214
           FD M  H V  DV    +++SA C+  N            + +R L E +   + +VD  
Sbjct: 212 FDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVDKG 271

Query: 215 --PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
             PD  ++ IL+ G+  E    EA     EM++     PE +  Y   +   +R   +++
Sbjct: 272 LVPDLYTYDILINGFCMEKRSREAKLMLLEMID-VGLKPEPI-TYNALIDGFMRQGDIEQ 329

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAV 332
           A +    M        L  ++  L+ + K      A+++   M+  G    P+   Y+ +
Sbjct: 330 AFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVE--PDSQTYSLL 387

Query: 333 IGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 392
           I   C   ++   F   D+M      P  LTY++I   L +   +        EM+ N  
Sbjct: 388 IEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGL 447

Query: 393 QPTPLNCATAITMLLDADEPEIAIEIWNYILE----NGILPLEASANELLVGLRNLGRLS 448
           +P     A   T L+ A   E  +E    ILE     GILP     N L++G     R+ 
Sbjct: 448 KPN----AVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRME 503

Query: 449 DVRRFAEEMLNRRI 462
           + R +  EML RR+
Sbjct: 504 EARTYLMEMLERRL 517



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 118/275 (42%), Gaps = 41/275 (14%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N+++D L K G  E+  N    ++  G+  +  T+A++ D YC +     A    + M
Sbjct: 663 TYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEM 722

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
            + GV  D    N +L+  C++E +  +AL+    + +       SF  L+EG+ K G +
Sbjct: 723 LLRGVPPDAFIYNVILNFCCKEE-KFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSGKL 781

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           +EAN    EM+E+ ++ P HV  Y + +    +   + EA +    M+  N  PT K ++
Sbjct: 782 QEANHLLEEMIEK-QFIPNHV-TYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYT 839

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
           + L                      G++                N  ++  V   F++MV
Sbjct: 840 SLLH---------------------GYH----------------NIGNMSEVSALFEEMV 862

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
             G  PD +TY ++ +   +   V E  K   E++
Sbjct: 863 AKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEIL 897



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 73/170 (42%), Gaps = 2/170 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           RG     + +N++++   K  +FE+  +  + M E G  S  +F ++ + YC +GK  EA
Sbjct: 725 RGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSGKLQEA 784

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
               + M       + V   SL+   C+          +L   ++ V P   ++  LL G
Sbjct: 785 NHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHG 844

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
           +   GN+ E +  F EMV +    P+  + Y   +    R   V EA K 
Sbjct: 845 YHNIGNMSEVSALFEEMVAK-GIEPDK-MTYYVMIDAYCREGNVMEACKL 892



 Score = 46.6 bits (109), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 84/189 (44%), Gaps = 7/189 (3%)

Query: 98  AVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDS 156
           A+D F+        S  ++N +++   K+G+ ++  + +  M E   + +  T+ S+ D 
Sbjct: 750 ALDLFQEMLEKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDH 809

Query: 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPD 216
            C AG   EA   +  M    V        SLL       N +  +  F   V K ++PD
Sbjct: 810 NCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPD 869

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGE-MVERFEWNPEHVLAYETFLITLIRGKQV----D 271
             ++ ++++ + +EGNV EA K   E +V+         L   T  + + RG Q+    D
Sbjct: 870 KMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMKSGFRLGLPTCSV-IARGFQIAGNMD 928

Query: 272 EALKFLRVM 280
           EA + LR M
Sbjct: 929 EAAEVLRSM 937


>gi|242056423|ref|XP_002457357.1| hypothetical protein SORBIDRAFT_03g005950 [Sorghum bicolor]
 gi|241929332|gb|EES02477.1| hypothetical protein SORBIDRAFT_03g005950 [Sorghum bicolor]
          Length = 543

 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 113/473 (23%), Positives = 206/473 (43%), Gaps = 37/473 (7%)

Query: 43  HLDAPYISSSARIICEILAHASSD--DIESALACTGIIPTPDLVHEVLQLSYDSPSSAVD 100
           HL   Y S     + ++L   S+D  D+  AL    +    D++  VLQ    +   A+ 
Sbjct: 82  HLTDVYASE----VLKVLKSTSADNADLSDALRRFAVHMDEDIILTVLQKQRSNWQVALA 137

Query: 101 FFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG---VLSLPTFASIFD 155
           FF WA    G      A+  M+D+LG+  +   M      + E+    V++   FA + +
Sbjct: 138 FFNWAATLPGYAHGSRAYTEMLDILGRMKKVRHMRQLFDEIPEERRVVVVTNKMFAVLLN 197

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDP 215
            Y GA K  EA+  F +   +G E D+V    LL ++CR ++      E L R KK   P
Sbjct: 198 RYAGAHKVQEAIEVFYLRKDYGFELDLVGFQILLMSLCRYKH--VEEAEALFREKKDEFP 255

Query: 216 D-GDSFAILLEGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLITLIRGKQVDEA 273
               S+ I+L GW  +G++ +A + + +++  + E     +  Y TF+  L +  ++  A
Sbjct: 256 HVTKSWNIILNGWCVKGSLRDAQRIWNDIIASKVE---RDLFTYGTFINALAKNGRISAA 312

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
           +K  + M      P +   +  +D L   N    A++++  M         ++  YN +I
Sbjct: 313 VKLFKKMWETGINPDVAICNCIIDQLCFKNRIPEALEIFGEMN--DRLCQADVATYNTLI 370

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
             LC    ++ V+   D M   G  P++ TY+ + +   K K V  +      M + E  
Sbjct: 371 KYLCKKKRMEKVYELLDDMEAKGCSPNNRTYSYVLKTTEKPKDVIAL------MQRMEQT 424

Query: 394 PTPLNCAT---AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 450
              L+  T    + +  +    +   ++W+ +  NG  P + S   ++ GL + G+L + 
Sbjct: 425 GCELDSDTYNLILNLYTNWKYEKGVQQVWDEMERNGSGPDQRSFTIMVHGLHSQGKLDEA 484

Query: 451 RRFAEEMLNR--------RILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCK 495
            ++   M +R        +IL+  + M K   A  ++S SM      L+RR +
Sbjct: 485 LQYYTTMKSRGMIPEPRTKILVKAMHMKKDGAATEDDSTSMAGKHLKLDRRSR 537


>gi|356524676|ref|XP_003530954.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g12700, mitochondrial-like
           [Glycine max]
          Length = 555

 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 155/328 (47%), Gaps = 12/328 (3%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
            +G  L  +++  +++ L KNG+       ++ M+ED V  +L T++++ D  C      
Sbjct: 153 AKGYPLDEFSYGSLINGLCKNGQTRDALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIA 212

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICR--QENQTSRALEFLNRVKKIVDPDGDSFAI 222
           +A+  F +++  G+  DVVA NSL+   C   Q  + +R L  +  V+  ++PD  +F I
Sbjct: 213 DALRLFSLVTSRGILVDVVAYNSLIHGCCSVGQWREATRLLTMM--VRGNINPDDYTFNI 270

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L++   KEG + EA   F  M++R E  P+ ++ Y   +        V EA +    M  
Sbjct: 271 LVDALCKEGRIVEAQGVFAVMMKRGE-KPD-IVTYNALMEGFCLSNNVSEARELFNRMVK 328

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLW-DIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
               P +  ++  ++   K++    A+ L+ +I      NL+PNL  YN++I  LC    
Sbjct: 329 RGLEPDVLNYNVLINGYCKIDMVDEAMVLFKEIRCK---NLVPNLATYNSLIDGLCKLGR 385

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
           +  V    D+M   G  PD +TYN+  +   K+K   +    F ++++  W P       
Sbjct: 386 MSCVQELVDEMCDRGQSPDIVTYNIFLDAFCKSKPYEKAISLFRQIVQGIW-PDFYMYDV 444

Query: 402 AITMLLDADEPEIAIEIWNYILENGILP 429
            +      ++ +IA E   ++L +G  P
Sbjct: 445 IVENFCKGEKLKIAEEALQHLLIHGCCP 472



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/349 (21%), Positives = 150/349 (42%), Gaps = 7/349 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + ++ ++  + + G +    +    +   G+  S+ T   + + YC       A      
Sbjct: 56  FVFDKLLGAIVRMGHYPTAISLFSQLHSKGITPSIATLTILINCYCHQAHLSFAFSLLGT 115

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEF-LNRVKKIVDPDGDSFAILLEGWEKEG 231
           +   G + ++V  N+L++  C      S+A+ F L+ + K    D  S+  L+ G  K G
Sbjct: 116 ILKMGFQPNMVTFNTLINGFC-INGMVSKAMAFRLDLMAKGYPLDEFSYGSLINGLCKNG 174

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
              +A +   +M E  +    +++ Y T +  L + + + +AL+   ++        +  
Sbjct: 175 QTRDALQLLQKMEE--DLVRPNLITYSTVIDGLCKDRLIADALRLFSLVTSRGILVDVVA 232

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           +++ +     +     A +L  +MV    N  P+   +N ++  LC    +      F  
Sbjct: 233 YNSLIHGCCSVGQWREATRLLTMMVRGNIN--PDDYTFNILVDALCKEGRIVEAQGVFAV 290

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M+  G  PD +TYN + E    +  V E  + F+ M+K   +P  LN    I      D 
Sbjct: 291 MMKRGEKPDIVTYNALMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVLINGYCKIDM 350

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
            + A+ ++  I    ++P  A+ N L+ GL  LGR+S V+   +EM +R
Sbjct: 351 VDEAMVLFKEIRCKNLVPNLATYNSLIDGLCKLGRMSCVQELVDEMCDR 399



 Score = 42.4 bits (98), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 32/153 (20%), Positives = 68/153 (44%), Gaps = 2/153 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           RGQ      +N+ +D   K+  +E+  +  R + +        +  I +++C   K   A
Sbjct: 399 RGQSPDIVTYNIFLDAFCKSKPYEKAISLFRQIVQGIWPDFYMYDVIVENFCKGEKLKIA 458

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLE 225
             +   + +HG   +V     +++A+C+ +     A+  L+++      PD  +F  ++ 
Sbjct: 459 EEALQHLLIHGCCPNVRTYTIMINALCK-DCSFDEAMTLLSKMDDNDCPPDAVTFETIIG 517

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYE 258
             ++    ++A K   EM+ER   N E  L +E
Sbjct: 518 ALQERNETDKAEKLRLEMIERGLVNDEARLVHE 550


>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
          Length = 826

 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 88/378 (23%), Positives = 163/378 (43%), Gaps = 7/378 (1%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCG 159
           FF     G   +   +N ++  L K+G  ++ +     M +DGV  +L T++ + +    
Sbjct: 269 FFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMK 328

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
             K++EA          G   + V  N+L+   C+  N         + V K ++P+  +
Sbjct: 329 LEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVT 388

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
              +++G+ K G +E+A     EM+ R F  NP    A+ T +  L    + + AL+FLR
Sbjct: 389 LNSIIQGFCKIGQMEQAECILEEMLSRGFSINPG---AFTTIIHWLCMNSRFESALRFLR 445

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            M   N  P     +  +  L K    + AV+LW  ++  GF    NL+  NA+I  LC 
Sbjct: 446 EMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFG--ANLVTTNALIHGLCK 503

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
             ++    R   +M+  G   D +TYN +     K  +V E  K   EM+K   +P    
Sbjct: 504 TGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFT 563

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
               I  +    + + A+ +WN      ++P   +   ++ G     ++ +  +   E+L
Sbjct: 564 YNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELL 623

Query: 459 NRRILIYEVTMHKLKKAF 476
            + + +  V  + L +A+
Sbjct: 624 TQNLELNSVVYNTLIRAY 641



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 148/348 (42%), Gaps = 11/348 (3%)

Query: 96  SSAVDF-FRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASI 153
           S AV+  FR   +G   +    N ++  L K G  ++    ++ M E G VL   T+ ++
Sbjct: 473 SDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTL 532

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KI 212
               C  GK +E       M   G+E D    N L+  +CR   +   A+   N  K + 
Sbjct: 533 ISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRI-GKLDEAVNLWNECKSRD 591

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLITLIRGKQVD 271
           + P+  ++ ++++G+ K   +EE  K F E++ +  E N    + Y T +    R     
Sbjct: 592 LVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNS---VVYNTLIRAYCRNGNTV 648

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA 331
           EA K    M+ +   PT   +S+ +  +  +     A  L D M   G  L+PN++ Y A
Sbjct: 649 EAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEG--LLPNVVCYTA 706

Query: 332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
           +IG  C    +D V     +M  +   P+ +TY ++ +   K+  +    K  HEM+   
Sbjct: 707 LIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKG 766

Query: 392 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 439
             P  +             + E   +I +Y+ + G LPL+      LV
Sbjct: 767 IVPDTVTYNVLTNGFCKEGKIEEGFKICDYMSQEG-LPLDEITYTTLV 813



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 81/387 (20%), Positives = 155/387 (40%), Gaps = 42/387 (10%)

Query: 97  SAVDFFRW-AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFD 155
           +A+  FR+ A +G   +      ++  L K    E+ +     M++     +  F++  +
Sbjct: 195 NAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMRQGVSPDVYLFSTAIN 254

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVD 214
           ++C  GK ++A+  F  M   GV  +VV  N+L+  +C+  N    A  F  + VK  V+
Sbjct: 255 AFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGN-LDEAFRFKEKMVKDGVN 313

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
               ++++L+ G  K     EAN    E +E+  + P  V+                   
Sbjct: 314 ATLITYSVLINGLMKLEKFNEANSVLKETLEK-GFTPNEVV------------------- 353

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
                            ++  +D   K+ +   A+++   MV  G N  PN +  N++I 
Sbjct: 354 -----------------YNTLIDGYCKMGNLGDALRIRGDMVSKGIN--PNSVTLNSIIQ 394

Query: 335 LLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
             C    ++      ++M+  G   +   +  I   L  N R     +F  EM+    +P
Sbjct: 395 GFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRP 454

Query: 395 TPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 454
                 T +  L    +   A+E+W  +LE G      + N L+ GL   G + +  R  
Sbjct: 455 NDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLL 514

Query: 455 EEMLNRRILIYEVTMHKLKKAFYNESR 481
           ++ML R  ++ ++T + L      E +
Sbjct: 515 KKMLERGFVLDKITYNTLISGCCKEGK 541



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 88/411 (21%), Positives = 167/411 (40%), Gaps = 58/411 (14%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM------KEDGVLSLPTFASIFDSYCGA 160
           RG  ++P A+  ++  L  N RFE     +R M        DG+L+     ++    C  
Sbjct: 415 RGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLT-----TLVGGLCKE 469

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDP----D 216
           GK+ +AV  +  +   G   ++V  N+L+  +C+  N      E +  +KK+++     D
Sbjct: 470 GKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQ----EAVRLLKKMLERGFVLD 525

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
             ++  L+ G  KEG VEE  K  GEMV++    P+    Y   +  + R  ++DEA+  
Sbjct: 526 KITYNTLISGCCKEGKVEEGFKLRGEMVKQ-GIEPD-TFTYNLLIHGMCRIGKLDEAVNL 583

Query: 277 LRVMKGENCFPTL--------------------KFFSNALDILVKLN------------- 303
               K  +  P +                    K F+  L   ++LN             
Sbjct: 584 WNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCR 643

Query: 304 --DSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS 361
             ++  A +L D M   G  + P    Y+++I  +CN   +++     D+M   G  P+ 
Sbjct: 644 NGNTVEAFKLHDDMRSKG--IPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNV 701

Query: 362 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 421
           + Y  +     K  ++ +V     EM   +  P  +     I     + + + A ++ + 
Sbjct: 702 VCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHE 761

Query: 422 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
           ++  GI+P   + N L  G    G++ +  +  + M    + + E+T   L
Sbjct: 762 MVGKGIVPDTVTYNVLTNGFCKEGKIEEGFKICDYMSQEGLPLDEITYTTL 812



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 96/214 (44%), Gaps = 3/214 (1%)

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL 322
           T  R      A+   R +  +  FPT+K  +  L  LVK N+   +  +++ M      +
Sbjct: 186 TQFRNVGFRNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMRQ---GV 242

Query: 323 MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
            P++ +++  I   C    V++  + F  M   G  P+ +TYN +   L K+  + E  +
Sbjct: 243 SPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFR 302

Query: 383 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 442
           F  +M+K+    T +  +  I  L+  ++   A  +    LE G  P E   N L+ G  
Sbjct: 303 FKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYC 362

Query: 443 NLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
            +G L D  R   +M+++ I    VT++ + + F
Sbjct: 363 KMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGF 396


>gi|15239018|ref|NP_196692.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174149|sp|Q9LFM6.1|PP375_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g11310, mitochondrial; Flags: Precursor
 gi|8953393|emb|CAB96666.1| putative protein [Arabidopsis thaliana]
 gi|110738090|dbj|BAF00978.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004275|gb|AED91658.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 602

 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 95/376 (25%), Positives = 166/376 (44%), Gaps = 19/376 (5%)

Query: 68  IESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA--GRGQRLSPYAWNLMVDVLGK 125
           +ESAL  TGI P+ +LVH +      SP      F+WA    G  LSP  ++ +V+ L K
Sbjct: 88  LESALDETGIEPSVELVHALFDRLSSSPMLLHSVFKWAEMKPGFTLSPSLFDSVVNSLCK 147

Query: 126 NGRFEQMWNAV--RVMKEDG--VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH----G 177
              FE  W+ V  RV  ++G  ++S  TF  +   Y  AG   +A+ +F+    +     
Sbjct: 148 AREFEIAWSLVFDRVRSDEGSNLVSADTFIVLIRRYARAGMVQQAIRAFEFARSYEPVCK 207

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD----PDGDSFAILLEGWEKEGNV 233
              ++  +  LL A+C+ E     A  +L R+   +D    P    F ILL GW +   +
Sbjct: 208 SATELRLLEVLLDALCK-EGHVREASMYLERIGGTMDSNWVPSVRIFNILLNGWFRSRKL 266

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           ++A K + EM +     P  V+ Y T +    R ++V  A++ L  MK          F+
Sbjct: 267 KQAEKLWEEM-KAMNVKPT-VVTYGTLIEGYCRMRRVQIAMEVLEEMKMAEMEINFMVFN 324

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +D L +    + A+ + +          P ++ YN+++   C   D+    +    M+
Sbjct: 325 PIIDGLGEAGRLSEALGMMERFFVCESG--PTIVTYNSLVKNFCKAGDLPGASKILKMMM 382

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G  P + TYN  F+   K+ +  E    + ++I+    P  L     + ML +  +  
Sbjct: 383 TRGVDPTTTTYNHFFKYFSKHNKTEEGMNLYFKLIEAGHSPDRLTYHLILKMLCEDGKLS 442

Query: 414 IAIEIWNYILENGILP 429
           +A+++   +   GI P
Sbjct: 443 LAMQVNKEMKNRGIDP 458


>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic [Vitis vinifera]
          Length = 1022

 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 88/378 (23%), Positives = 163/378 (43%), Gaps = 7/378 (1%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCG 159
           FF     G   +   +N ++  L K+G  ++ +     M +DGV  +L T++ + +    
Sbjct: 336 FFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMK 395

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
             K++EA          G   + V  N+L+   C+  N         + V K ++P+  +
Sbjct: 396 LEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVT 455

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
              +++G+ K G +E+A     EM+ R F  NP    A+ T +  L    + + AL+FLR
Sbjct: 456 LNSIIQGFCKIGQMEQAECILEEMLSRGFSINPG---AFTTIIHWLCMNSRFESALRFLR 512

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            M   N  P     +  +  L K    + AV+LW  ++  GF    NL+  NA+I  LC 
Sbjct: 513 EMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFG--ANLVTTNALIHGLCK 570

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
             ++    R   +M+  G   D +TYN +     K  +V E  K   EM+K   +P    
Sbjct: 571 TGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFT 630

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
               I  +    + + A+ +WN      ++P   +   ++ G     ++ +  +   E+L
Sbjct: 631 YNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELL 690

Query: 459 NRRILIYEVTMHKLKKAF 476
            + + +  V  + L +A+
Sbjct: 691 TQNLELNSVVYNTLIRAY 708



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 133/303 (43%), Gaps = 10/303 (3%)

Query: 96  SSAVD-FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASI 153
           S AV+ +FR   +G   +    N ++  L K G  ++    ++ M E G VL   T+ ++
Sbjct: 540 SDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTL 599

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KI 212
               C  GK +E       M   G+E D    N L+  +CR   +   A+   N  K + 
Sbjct: 600 ISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRI-GKLDEAVNLWNECKSRD 658

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLITLIRGKQVD 271
           + P+  ++ ++++G+ K   +EE  K F E++ +  E N    + Y T +    R     
Sbjct: 659 LVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNS---VVYNTLIRAYCRNGNTV 715

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA 331
           EA K    M+ +   PT   +S+ +  +  +     A  L D M   G  L+PN++ Y A
Sbjct: 716 EAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEG--LLPNVVCYTA 773

Query: 332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
           +IG  C    +D V     +M  +   P+ +TY ++ +   K+  +    K  HEM+   
Sbjct: 774 LIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKG 833

Query: 392 WQP 394
             P
Sbjct: 834 IVP 836



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 81/387 (20%), Positives = 155/387 (40%), Gaps = 42/387 (10%)

Query: 97  SAVDFFRW-AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFD 155
           +A+  FR+ A +G   +      ++  L K    E+ +     M++     +  F++  +
Sbjct: 262 NAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMRQGVSPDVYLFSTAIN 321

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVD 214
           ++C  GK ++A+  F  M   GV  +VV  N+L+  +C+  N    A  F  + VK  V+
Sbjct: 322 AFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGN-LDEAFRFKEKMVKDGVN 380

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
               ++++L+ G  K     EAN    E +E+  + P  V+                   
Sbjct: 381 ATLITYSVLINGLMKLEKFNEANSVLKETLEK-GFTPNEVV------------------- 420

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
                            ++  +D   K+ +   A+++   MV  G N  PN +  N++I 
Sbjct: 421 -----------------YNTLIDGYCKMGNLGDALRIRGDMVSKGIN--PNSVTLNSIIQ 461

Query: 335 LLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
             C    ++      ++M+  G   +   +  I   L  N R     +F  EM+    +P
Sbjct: 462 GFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRP 521

Query: 395 TPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 454
                 T +  L    +   A+E+W  +LE G      + N L+ GL   G + +  R  
Sbjct: 522 NDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLL 581

Query: 455 EEMLNRRILIYEVTMHKLKKAFYNESR 481
           ++ML R  ++ ++T + L      E +
Sbjct: 582 KKMLERGFVLDKITYNTLISGCCKEGK 608



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 87/398 (21%), Positives = 166/398 (41%), Gaps = 64/398 (16%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE---------DGVLSLPTFASIFDSY 157
           RG  ++P A+  ++  L  N RFE   +A+R ++E         DG+L+     ++    
Sbjct: 482 RGFSINPGAFTTIIHWLCMNSRFE---SALRFLREMLLRNMRPNDGLLT-----TLVGGL 533

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDP-- 215
           C  GK+ +AV  +  +   G   ++V  N+L+  +C+  N      E +  +KK+++   
Sbjct: 534 CKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQ----EAVRLLKKMLERGF 589

Query: 216 --DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
             D  ++  L+ G  KEG VEE  K  GEMV++    P+    Y   +  + R  ++DEA
Sbjct: 590 VLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQ-GIEPD-TFTYNLLIHGMCRIGKLDEA 647

Query: 274 LKFLRVMKGENCFPTL--------------------KFFSNALDILVKLN---------- 303
           +      K  +  P +                    K F+  L   ++LN          
Sbjct: 648 VNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRA 707

Query: 304 -----DSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAF 358
                ++  A +L D M   G  + P    Y+++I  +CN   +++     D+M   G  
Sbjct: 708 YCRNGNTVEAFKLHDDMRSKG--IPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLL 765

Query: 359 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 418
           P+ + Y  +     K  ++ +V     EM   +  P  +     I     + + + A ++
Sbjct: 766 PNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKL 825

Query: 419 WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 456
            + ++  GI+P   + N L  G    G++ + +  AE+
Sbjct: 826 LHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGKLLAED 863



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 96/214 (44%), Gaps = 3/214 (1%)

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL 322
           T  R      A+   R +  +  FPT+K  +  L  LVK N+   +  +++ M      +
Sbjct: 253 TQFRNVGFRNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMRQ---GV 309

Query: 323 MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
            P++ +++  I   C    V++  + F  M   G  P+ +TYN +   L K+  + E  +
Sbjct: 310 SPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFR 369

Query: 383 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 442
           F  +M+K+    T +  +  I  L+  ++   A  +    LE G  P E   N L+ G  
Sbjct: 370 FKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYC 429

Query: 443 NLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
            +G L D  R   +M+++ I    VT++ + + F
Sbjct: 430 KMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGF 463


>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 148/352 (42%), Gaps = 36/352 (10%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           ++++   Y   G+ +EA    D MS  GV  D+   N+++S + +       +   L   
Sbjct: 188 YSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQ 247

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER--FEWNPEH-------------- 253
            + + PD  +F   + G+ K G + EA K F EM++      NP +              
Sbjct: 248 GRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLM 307

Query: 254 -----------------VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
                            V     F+  L++  +V EALK    +K +   P +  +S+ +
Sbjct: 308 EALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLI 367

Query: 297 DILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG 356
               K  +   A +L D M   G  + PN+ +YNA++  LC + D+    + FD M   G
Sbjct: 368 SGFCKQGEVEKAFELHDEMCLKG--IAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKG 425

Query: 357 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 416
             PDS+TY+ + +   K++ V E    FHEM     QP        +       + E A+
Sbjct: 426 LEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAM 485

Query: 417 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 468
            ++  +L+ G      S N L+ G     ++ +  +  +EM+ ++I+   VT
Sbjct: 486 NLFREMLQKG-FATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVT 536



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 153/350 (43%), Gaps = 25/350 (7%)

Query: 125 KNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV 183
           KNGR ++       +KE G++  + T++S+   +C  G+ ++A    D M + G+  ++ 
Sbjct: 337 KNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIF 396

Query: 184 AVNSLLSAICRQEN-QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
             N+L+  +C+  + Q +R L F    +K ++PD  +++ +++G+ K  NV EA   F E
Sbjct: 397 IYNALVDGLCKSGDIQRARKL-FDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHE 455

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
           M  +    P H   Y   +    +   +++A+   R M  +  F T   F+  +D   K 
Sbjct: 456 MPSK-GVQP-HSFVYNALVHGCCKEGDMEKAMNLFREML-QKGFATTLSFNTLIDGYCKS 512

Query: 303 NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN-----------------NDDVDNV 345
                A QL+  M  I   +MP+ + Y  VI   C                  N  VD V
Sbjct: 513 CKIQEASQLFQEM--IAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTV 570

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
           F  F++MV  G  PD +TY ++     K   + E  K   E++              IT 
Sbjct: 571 FALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITA 630

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 455
           L   ++   A ++ + + E G+ P  A+ + L+      G++ +  R  E
Sbjct: 631 LCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFE 680



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 87/391 (22%), Positives = 160/391 (40%), Gaps = 31/391 (7%)

Query: 88  LQLSYDSPSSAVDFFRWAGR--------------GQRLSPYAWNLMVDVLGKNGRFEQMW 133
           L+  Y++ S+ +D F   G               G  ++   +N+++  L K G+ E+  
Sbjct: 41  LKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEK-- 98

Query: 134 NAVRVMKEDGVLSLP------TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS 187
            A  ++K  G+++L       TF  + + YC       A+   D M    +    V+  +
Sbjct: 99  -AAEILK--GMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGA 155

Query: 188 LLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
           +++ +C  ++  S A + L ++    + P+   ++ L+ G+  EG +EEA +    M   
Sbjct: 156 MINGLCHCKD-LSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGM--S 212

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
                  +  Y   +  L +  +++EA  +L  ++G    P    F   +    K    T
Sbjct: 213 CSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMT 272

Query: 307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM 366
            A + +D M+  G  LMPN  +Y  +I       ++      F  +   G  PD  T + 
Sbjct: 273 EAAKYFDEMLDHG--LMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSA 330

Query: 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 426
               L+KN RV E  K F E+ +    P     ++ I+      E E A E+ + +   G
Sbjct: 331 FIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKG 390

Query: 427 ILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           I P     N L+ GL   G +   R+  + M
Sbjct: 391 IAPNIFIYNALVDGLCKSGDIQRARKLFDGM 421



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 62/294 (21%), Positives = 132/294 (44%), Gaps = 10/294 (3%)

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M   G+  +      + + +CR +      L F    K  + PD ++ + L++G+ +EG+
Sbjct: 1   MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 60

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           ++E  +    MV      P +++ Y   +  L +  ++++A + L+ M    C P  + F
Sbjct: 61  IDEVLRIKDVMVSC--GIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTF 118

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
              ++   + ++   A++L D M     NL+P+ + Y A+I  LC+  D+    +  ++M
Sbjct: 119 CLLIEGYCREHNMGRALELLDEMEK--RNLVPSAVSYGAMINGLCHCKDLSLANKLLEKM 176

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
            F G  P+ + Y+ +        R+ E  +    M  +   P        I+ L  A + 
Sbjct: 177 TFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKM 236

Query: 413 EIAIEIWNYILE---NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
           E   E   Y+LE    G+ P   +    ++G    G++++  ++ +EML+  ++
Sbjct: 237 E---EASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLM 287



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/361 (21%), Positives = 152/361 (42%), Gaps = 11/361 (3%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTF---ASIFDSYCGAGKY 163
           +G   + Y + ++   L +  R  +       M++ G+   P +   +++ D +   G  
Sbjct: 4   KGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLK--PDYNACSALIDGFMREGDI 61

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAI 222
           DE +   DVM   G+  +++  N L+  +C+   +  +A E L  +  +   P+  +F +
Sbjct: 62  DEVLRIKDVMVSCGIPINLITYNVLIHGLCKF-GKMEKAAEILKGMITLGCKPNSRTFCL 120

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+EG+ +E N+  A +   EM E+    P  V +Y   +  L   K +  A K L  M  
Sbjct: 121 LIEGYCREHNMGRALELLDEM-EKRNLVPSAV-SYGAMINGLCHCKDLSLANKLLEKMTF 178

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
               P +  +S  +           A +L D M   G  + P++  YNA+I  L     +
Sbjct: 179 SGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSG--VAPDIFCYNAIISCLSKAGKM 236

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
           +    +  ++   G  PD++T+        K  ++ E  K+F EM+ +   P        
Sbjct: 237 EEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVL 296

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
           I     A     A+ I+ ++   G+LP   + +  + GL   GR+ +  +   E+  + +
Sbjct: 297 INGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGL 356

Query: 463 L 463
           +
Sbjct: 357 V 357



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 62/279 (22%), Positives = 99/279 (35%), Gaps = 54/279 (19%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGA 160
           F     +G +   + +N +V    K G  E+  N  R M + G  +  +F ++ D YC +
Sbjct: 453 FHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKS 512

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSF 220
            K  EA   F  M                                   + K + PD  ++
Sbjct: 513 CKIQEASQLFQEM-----------------------------------IAKQIMPDHVTY 537

Query: 221 AILLEGWEKEGNVEEANKTFGEMVER----------FE------WNPEHVLAYETFLITL 264
             +++   K G +EEAN  F EM ER          FE        P+ V  Y   +   
Sbjct: 538 TTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVFALFEKMVAKGVKPDEV-TYGLVIYAH 596

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
            +   + EA K    + G+            +  L K  D T A +L D M  +G  L P
Sbjct: 597 CKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELG--LKP 654

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLT 363
           +L   + ++        +D   R F+ +   G  PD+ T
Sbjct: 655 SLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTT 693


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 87/378 (23%), Positives = 166/378 (43%), Gaps = 8/378 (2%)

Query: 109 QRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +RL P A  +   +D   K G  E        M   GVL ++  + ++ + +C  G   E
Sbjct: 524 RRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTE 583

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A   F  +    V QDV   + L+  + R          F    +K + P+  ++  L+ 
Sbjct: 584 AFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLIS 643

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G  K+GNV++A++   EM  +   NP+ ++ Y   +  L +  +++ A      ++G   
Sbjct: 644 GSCKQGNVDKASQLLEEMCIK-GINPD-IVTYNILIDGLCKAGEIERAKNLFDDIEGRGL 701

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P    ++  +D   K  + T A QL + M+  G  + P+  +YN ++   C  +  +  
Sbjct: 702 TPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRG--VPPDAFIYNVILNFCCKEEKFEKA 759

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
              F +M+  G F  ++++N + E   K+ ++ E      EMI+ ++ P  +   + I  
Sbjct: 760 LDLFQEMLEKG-FASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDH 818

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 465
              A     A  +W  + E  ++P   +   LL G  N+G +S+V    EEM+ + I   
Sbjct: 819 NCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPD 878

Query: 466 EVTMHKLKKAFYNESRSM 483
           ++T + +  A+  E   M
Sbjct: 879 KMTYYVMIDAYCREGNVM 896



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 93/441 (21%), Positives = 178/441 (40%), Gaps = 60/441 (13%)

Query: 42  THLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDF 101
            H     +  + R++ E+     S ++ +     G +    L+ E ++L      S VD 
Sbjct: 224 AHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELK----RSMVD- 278

Query: 102 FRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGA 160
                +G     Y ++++++      R  +    +  M + G+   P T+ ++ D +   
Sbjct: 279 -----KGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQ 333

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDS 219
           G  ++A    D M   G+E +++  N+LL+ +C+   +  +ALE +  + +K V+PD  +
Sbjct: 334 GDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKA-GKMEKALEIMQEMMEKGVEPDSQT 392

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           +++L+EG                                       RG+ +  A + L  
Sbjct: 393 YSLLIEGH-------------------------------------CRGQNMARAFELLDE 415

Query: 280 MKGENCFPTLKFFSNALDILVKLND--STHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337
           MK     PT+  +S  ++ L +  +   T+A+    +M G    L PN ++Y  ++    
Sbjct: 416 MKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNG----LKPNAVVYTTLMTAHA 471

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
               V+      ++M   G  PD   YN +     K KR+ E   +  EM++   +P   
Sbjct: 472 KEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAH 531

Query: 398 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
                I     A E EIA   +N +L  G+LP       L+ G    G +++       +
Sbjct: 532 TYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFI 591

Query: 458 LNRRIL----IYEVTMHKLKK 474
           L+RR+L     Y V +H L +
Sbjct: 592 LSRRVLQDVQTYSVLIHGLSR 612



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 82/423 (19%), Positives = 167/423 (39%), Gaps = 54/423 (12%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           + ++L+P    ++++++ L + G  +     +R M  +G+  +   + ++  ++   G+ 
Sbjct: 417 KKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRV 476

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
           +E+ M  + M   G+  DV   NSL+   C+ +         +  +++ + P+  ++   
Sbjct: 477 EESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAF 536

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK----QVDEALKFLRV 279
           ++G+ K G +E A++ F EM+         VL        LI G      V EA    R 
Sbjct: 537 IDGYSKAGEMEIADRYFNEMLSC------GVLPNVGIYTALIEGHCKEGNVTEAFSVFRF 590

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
           +        ++ +S  +  L +      A  ++  +   G  L+PN   YN++I   C  
Sbjct: 591 ILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKG--LLPNAFTYNSLISGSCKQ 648

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
            +VD   +  ++M   G  PD +TYN++ + L K   +   +  F ++      P  +  
Sbjct: 649 GNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTY 708

Query: 400 ATAITMLLDADEPEIAIEIWNYILENGILP----------------------------LE 431
           A  +     +  P  A ++   +L  G+ P                            LE
Sbjct: 709 AAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLE 768

Query: 432 ------ASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTM-----HKLKKAFYNES 480
                  S N L+ G    G+L +     EEM+ ++ +   VT      H  K     E+
Sbjct: 769 KGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEA 828

Query: 481 RSM 483
           + +
Sbjct: 829 KRL 831



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 146/359 (40%), Gaps = 15/359 (4%)

Query: 110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVM 168
           R S  + N ++  L K  + E  W     M    VL  + T+ ++  ++C  G   +A  
Sbjct: 177 RPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKR 236

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF-LNRVKKIVDPDGDSFAILLEGW 227
               M   G   ++V  N ++  +CR       A+E   + V K + PD  ++ IL+ G+
Sbjct: 237 VLLEMGEKGCSPNLVTYNVIIGGLCRAR-LLDEAIELKRSMVDKGLVPDLYTYDILINGF 295

Query: 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
             E    EA     EM++     PE +  Y   +   +R   +++A +    M       
Sbjct: 296 CMEKRSREAKLMLLEMID-VGLKPEPI-TYNALIDGFMRQGDIEQAFRIKDEMVACGIEA 353

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFR 347
            L  ++  L+ + K      A+++   M+  G    P+   Y+ +I   C   ++   F 
Sbjct: 354 NLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVE--PDSQTYSLLIEGHCRGQNMARAFE 411

Query: 348 FFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 407
             D+M      P  LTY++I   L +   +        EM+ N  +P     A   T L+
Sbjct: 412 LLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPN----AVVYTTLM 467

Query: 408 DADEPEIAIEIWNYILE----NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
            A   E  +E    ILE     GILP     N L++G     R+ + R +  EML RR+
Sbjct: 468 TAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRL 526



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/315 (23%), Positives = 135/315 (42%), Gaps = 47/315 (14%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N+++D L K G  E+  N    ++  G+  +  T+A++ D YC +     A    + M 
Sbjct: 673 YNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEML 732

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
           + GV  D    N +L+  C++E +  +AL+    + +       SF  L+EG+ K G ++
Sbjct: 733 LRGVPPDAFIYNVILNFCCKEE-KFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSGKLQ 791

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           EAN    EM+E+ ++ P HV  Y + +    +   + EA +    M+  N  PT K +++
Sbjct: 792 EANHLLEEMIEK-QFIPNHV-TYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTS 849

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
            L                      G++                N  ++  V   F++MV 
Sbjct: 850 LLH---------------------GYH----------------NIGNMSEVSALFEEMVA 872

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA---TAITMLLDADE 411
            G  PD +TY ++ +   +   V E  K   E++    +  P++ A     I  L   +E
Sbjct: 873 KGIEPDKMTYYVMIDAYCREGNVMEACKLKDEIL---VKGMPMSVAAYDALIQALCKKEE 929

Query: 412 PEIAIEIWNYILENG 426
               +++ N I E+G
Sbjct: 930 FFEVLKLLNEIGESG 944



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 98/218 (44%), Gaps = 8/218 (3%)

Query: 98  AVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDS 156
           A+D F+        S  ++N +++   K+G+ ++  + +  M E   + +  T+ S+ D 
Sbjct: 759 ALDLFQEMLEKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDH 818

Query: 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPD 216
            C AG   EA   +  M    V        SLL       N +  +  F   V K ++PD
Sbjct: 819 NCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPD 878

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
             ++ ++++ + +EGNV EA K   E++   +  P  V AY+  +  L + ++  E LK 
Sbjct: 879 KMTYYVMIDAYCREGNVMEACKLKDEIL--VKGMPMSVAAYDALIQALCKKEEFFEVLKL 936

Query: 277 LRVMKGENCF----PTLKFFSNALDILVKLNDSTHAVQ 310
           L  + GE+ F    PT    +    I   ++++   ++
Sbjct: 937 LNEI-GESGFRLGLPTCSVIARGFQIAGNMDEAAEVLR 973



 Score = 45.8 bits (107), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 50/110 (45%)

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
           F   P+L+  N+++G L   + V+  ++ FD M  H   PD  TY  +     K   V +
Sbjct: 174 FEFRPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKD 233

Query: 380 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
            ++   EM +    P  +     I  L  A   + AIE+   +++ G++P
Sbjct: 234 AKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVP 283



 Score = 43.5 bits (101), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 8/122 (6%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+  + D+YC  G   EA    D + + G+   V A ++L+ A+C++E +    L+ LN 
Sbjct: 881 TYYVMIDAYCREGNVMEACKLKDEILVKGMPMSVAAYDALIQALCKKE-EFFEVLKLLNE 939

Query: 209 VKKIVDPDG-DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           + +     G  + +++  G++  GN++EA +    MV +F W     ++  T L  L+ G
Sbjct: 940 IGESGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSMV-KFGW-----VSNTTSLGDLVDG 993

Query: 268 KQ 269
            Q
Sbjct: 994 NQ 995


>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/381 (21%), Positives = 157/381 (41%), Gaps = 8/381 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGA 160
           F   + +G       +  MV  L K G+ +         K     S+P + ++ D  C  
Sbjct: 202 FVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFKP----SVPVYNALIDGMCKE 257

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSF 220
           G+ + A+     M  +GV+ +VV+ + +++++C   N       F     +  D +  +F
Sbjct: 258 GRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTF 317

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
             L++G    G + EA   +  M++  +    +V+AY T +  L     ++EAL+    M
Sbjct: 318 TPLIKGCFMRGKLYEALDLWKLMIQ--DGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQM 375

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
           +   C P +  +S  +D   K  D   A + W+ M+  G    PN++ Y  ++ +LC N 
Sbjct: 376 QRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCR--PNVVTYTCMVDVLCKNS 433

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
             D      ++M   G  P+++T+N   + L  N RV    K    M  +   P      
Sbjct: 434 MFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYN 493

Query: 401 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
             +  L   ++ E A  ++  I    + P   + N +L G    G + +  +   + L R
Sbjct: 494 ELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVR 553

Query: 461 RILIYEVTMHKLKKAFYNESR 481
                 +T + +  A+  + +
Sbjct: 554 GTAPDSITYNTMIHAYCKQGK 574



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 91/396 (22%), Positives = 170/396 (42%), Gaps = 12/396 (3%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F+R    G + +   +N ++D L    +F+ +      MK+DG++ ++ T+  +  + C 
Sbjct: 132 FYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCK 191

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
             + D A   F  MS  G   D V   +++S++C+   +   A E   R K    P    
Sbjct: 192 NDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCK-AGKIDDARELAGRFK----PSVPV 246

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           +  L++G  KEG +E A K  GEM++    +P +V++Y   + +L     V+ A      
Sbjct: 247 YNALIDGMCKEGRIEVAIKLLGEMMDN-GVDP-NVVSYSCIINSLCVSGNVELAFALFAQ 304

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
           M    C   +  F+  +           A+ LW +M+  G    PN++ YN +I  LC+N
Sbjct: 305 MFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCE--PNVVAYNTLIHGLCSN 362

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
             ++   +  DQM   G  P+  TY+++ +   K+  +    + ++ MI +  +P  +  
Sbjct: 363 GSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTY 422

Query: 400 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
              + +L      + A  +   +   G  P   + N  + GL   GR+    +  E M  
Sbjct: 423 TCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQG 482

Query: 460 RRILIYEVTMHKLKKAFY--NESRSMRDIFDSLERR 493
              L    T ++L  A +  N+      +F  +E R
Sbjct: 483 HGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEAR 518



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/301 (21%), Positives = 122/301 (40%), Gaps = 41/301 (13%)

Query: 73  ACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQM 132
            C   + T  ++ +    S D   ++  + R    G R +   +  MVDVL KN  F+Q 
Sbjct: 379 GCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQA 438

Query: 133 WNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
            + V  M  +G   +  TF +     CG G+ + A+   + M  HG   ++   N LL A
Sbjct: 439 NSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDA 498

Query: 192 ICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
           + R  N+   A      ++ + + P+  ++  +L G+ + G + EA + FG+ + R    
Sbjct: 499 LFRM-NKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGT-A 556

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P+ +  Y T +    +  +V                           I  +L +   +++
Sbjct: 557 PDSI-TYNTMIHAYCKQGKV--------------------------KIAAQLVERVSSMK 589

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
            W           P++I Y ++I   CN  +++    F D+ +  G  P+  T+N +  C
Sbjct: 590 EWH----------PDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALVRC 639

Query: 371 L 371
            
Sbjct: 640 F 640



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 87/210 (41%), Gaps = 13/210 (6%)

Query: 256 AYETFLITLIRGKQVDEALKFLRVMK--GENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
            Y   +  L R  ++D     L+ MK  G NC   L  F   ++   ++  +  A++++ 
Sbjct: 76  TYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDL--FICIINGYKRVGSAEQALKMF- 132

Query: 314 IMVGIG-FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 372
               IG F   P + +YN ++  L + +    +   +  M   G  P+  TYN++ + L 
Sbjct: 133 --YRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALC 190

Query: 373 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 432
           KN RV    K F EM      P  +   T ++ L  A + + A E     L     P   
Sbjct: 191 KNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARE-----LAGRFKPSVP 245

Query: 433 SANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
             N L+ G+   GR+    +   EM++  +
Sbjct: 246 VYNALIDGMCKEGRIEVAIKLLGEMMDNGV 275


>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/381 (21%), Positives = 157/381 (41%), Gaps = 8/381 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGA 160
           F   + +G       +  MV  L K G+ +         K     S+P + ++ D  C  
Sbjct: 202 FVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFKP----SVPVYNALIDGMCKE 257

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSF 220
           G+ + A+     M  +GV+ +VV+ + +++++C   N       F     +  D +  +F
Sbjct: 258 GRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTF 317

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
             L++G    G + EA   +  M++  +    +V+AY T +  L     ++EAL+    M
Sbjct: 318 TPLIKGCFMRGKLYEALDLWKLMIQ--DGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQM 375

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
           +   C P +  +S  +D   K  D   A + W+ M+  G    PN++ Y  ++ +LC N 
Sbjct: 376 QRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCR--PNVVTYTCMVDVLCKNS 433

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
             D      ++M   G  P+++T+N   + L  N RV    K    M  +   P      
Sbjct: 434 MFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYN 493

Query: 401 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
             +  L   ++ E A  ++  I    + P   + N +L G    G + +  +   + L R
Sbjct: 494 ELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVR 553

Query: 461 RILIYEVTMHKLKKAFYNESR 481
                 +T + +  A+  + +
Sbjct: 554 GTAPDSITYNTMIHAYCKQGK 574



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 91/396 (22%), Positives = 170/396 (42%), Gaps = 12/396 (3%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F+R    G + +   +N ++D L    +F+ +      MK+DG++ ++ T+  +  + C 
Sbjct: 132 FYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCK 191

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
             + D A   F  MS  G   D V   +++S++C+   +   A E   R K    P    
Sbjct: 192 NDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCK-AGKIDDARELAGRFK----PSVPV 246

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           +  L++G  KEG +E A K  GEM++    +P +V++Y   + +L     V+ A      
Sbjct: 247 YNALIDGMCKEGRIEVAIKLLGEMMDN-GVDP-NVVSYSCIINSLCVSGNVELAFALFAQ 304

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
           M    C   +  F+  +           A+ LW +M+  G    PN++ YN +I  LC+N
Sbjct: 305 MFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCE--PNVVAYNTLIHGLCSN 362

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
             ++   +  DQM   G  P+  TY+++ +   K+  +    + ++ MI +  +P  +  
Sbjct: 363 GSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTY 422

Query: 400 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
              + +L      + A  +   +   G  P   + N  + GL   GR+    +  E M  
Sbjct: 423 TCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQG 482

Query: 460 RRILIYEVTMHKLKKAFY--NESRSMRDIFDSLERR 493
              L    T ++L  A +  N+      +F  +E R
Sbjct: 483 HGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEAR 518



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/301 (21%), Positives = 122/301 (40%), Gaps = 41/301 (13%)

Query: 73  ACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQM 132
            C   + T  ++ +    S D   ++  + R    G R +   +  MVDVL KN  F+Q 
Sbjct: 379 GCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQA 438

Query: 133 WNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
            + V  M  +G   +  TF +     CG G+ + A+   + M  HG   ++   N LL A
Sbjct: 439 NSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDA 498

Query: 192 ICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
           + R  N+   A      ++ + + P+  ++  +L G+ + G + EA + FG+ + R    
Sbjct: 499 LFRM-NKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGT-A 556

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P+ +  Y T +    +  +V                           I  +L +   +++
Sbjct: 557 PDSI-TYNTMIHAYCKQGKV--------------------------KIAAQLVERVSSMK 589

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
            W           P++I Y ++I   CN  +++    F D+ +  G  P+  T+N +  C
Sbjct: 590 EWH----------PDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALVRC 639

Query: 371 L 371
            
Sbjct: 640 F 640



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 87/210 (41%), Gaps = 13/210 (6%)

Query: 256 AYETFLITLIRGKQVDEALKFLRVMK--GENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
            Y   +  L R  ++D     L+ MK  G NC   L  F   ++   ++  +  A++++ 
Sbjct: 76  TYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDL--FICIINGYKRVGSAEQALKMF- 132

Query: 314 IMVGIG-FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 372
               IG F   P + +YN ++  L + +    +   +  M   G  P+  TYN++ + L 
Sbjct: 133 --YRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALC 190

Query: 373 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 432
           KN RV    K F EM      P  +   T ++ L  A + + A E     L     P   
Sbjct: 191 KNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARE-----LAGRFKPSVP 245

Query: 433 SANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
             N L+ G+   GR+    +   EM++  +
Sbjct: 246 VYNALIDGMCKEGRIEVAIKLLGEMMDNGV 275


>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 85/358 (23%), Positives = 156/358 (43%), Gaps = 6/358 (1%)

Query: 98  AVDFFRWAGRGQRL-SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFD 155
            + FF+   R   L +   +N M+D   K  R ++ +  +R M   G+  +L TF  I +
Sbjct: 2   GLRFFKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIIN 61

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDP 215
             C  G+  E       MS  G   D V  N+L++  C++ N     +     V+  + P
Sbjct: 62  GLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSP 121

Query: 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK 275
           +  ++  L+    K GN+  A + F +M  R     E    Y T +    +   +DEA +
Sbjct: 122 NVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNER--TYTTIINGFAQQGLLDEAYR 179

Query: 276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGL 335
            L  M      P++  ++  ++    L     A+ L   MVG G  ++P+++ Y+ +I  
Sbjct: 180 VLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKG--VLPDVVSYSTIISG 237

Query: 336 LCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 395
              N ++D  F+   +M+     PD++TY+ + + L + +R+ E    F EM+  +  P 
Sbjct: 238 FARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPD 297

Query: 396 PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 453
                T I       +   A+ + + +++ G LP   + N L+ GL    R  + RR 
Sbjct: 298 EFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQARSKEARRL 355



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 76/185 (41%), Gaps = 2/185 (1%)

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAV 332
            L+F + M+   C P +  ++  +D   KL  +  A      M   G  L PNLI +N +
Sbjct: 2   GLRFFKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKG--LEPNLITFNMI 59

Query: 333 IGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 392
           I  LC +  +        +M   G  PD +TYN +     K    H+      EM++N  
Sbjct: 60  INGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGL 119

Query: 393 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 452
            P  +   + I  +  A     A+E ++ +   G+ P E +   ++ G    G L +  R
Sbjct: 120 SPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYR 179

Query: 453 FAEEM 457
              EM
Sbjct: 180 VLNEM 184



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 65/158 (41%)

Query: 323 MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
           +PN++ YN +I   C     D  F F   M   G  P+ +T+NMI   L ++ R+ E  +
Sbjct: 15  LPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGLCRDGRLKETSE 74

Query: 383 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 442
              EM +  + P  +   T +           A+ +   ++ NG+ P   +   L+  + 
Sbjct: 75  VLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPNVVTYTSLINSMC 134

Query: 443 NLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 480
             G L+    F ++M  R +   E T   +   F  + 
Sbjct: 135 KAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQG 172



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 75/387 (19%), Positives = 163/387 (42%), Gaps = 62/387 (16%)

Query: 98  AVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFD 155
           A++FF +   RG   +   +  +++   + G  ++ +  +  M   G + S+ T+ ++ +
Sbjct: 142 AMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALIN 201

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF-LNRVKKIVD 214
            +C  G+ +EA+     M   GV  DVV+ ++++S   R + +  RA +  +  + K V 
Sbjct: 202 GHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQ-ELDRAFQMKVEMIGKSVL 260

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           PD  +++ L++G  ++  + EA   F EM+   +  P+    Y T +    +   +++AL
Sbjct: 261 PDAVTYSSLIQGLCEQRRLTEACDMFQEMLT-IKLPPDE-FTYTTLINAYCKEGDLNKAL 318

Query: 275 KFLRVMKGENCFP---TLKFFSNALD----------ILVKL--NDSTHAVQLWDIMVG-- 317
                M  +   P   T     N L+          +L+KL  +DS  +   ++ ++   
Sbjct: 319 HLHDEMIQKGFLPDAVTYNVLINGLNKQARSKEARRLLLKLFYDDSIPSAVTYNTLIENC 378

Query: 318 -------------------------------IGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346
                                          I  N  PN  +YN +I   C   +V   +
Sbjct: 379 CNIEFKSAVALVKGFCMKGLMDEADQVFESMINKNHKPNEAIYNVIIHGHCRIGNVLKAY 438

Query: 347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406
           + + +MV     P ++T       L+K      ++   +E+I +  +   L  A    +L
Sbjct: 439 KLYKEMVHVDFVPHTVT----VLALVKALFTEGMDGELNEVIGDILRSCKLTDAELSKVL 494

Query: 407 LDADEPEIAIE-IWNYILE---NGILP 429
           ++ ++ E  ++ ++N + E   +G++P
Sbjct: 495 VEINQKEGNMDMVFNLLTEMAKDGLIP 521



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 62/152 (40%), Gaps = 6/152 (3%)

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
            RFF +M  +G  P+ +TYN + +   K KR  E   F   M     +P  +     I  
Sbjct: 3   LRFFKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIING 62

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNRR 461
           L      +   E+   +   G +P E + N L+ G    G          EM    L+  
Sbjct: 63  LCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPN 122

Query: 462 ILIYEVTMHKLKKAFYNESRSMRDIFDSLERR 493
           ++ Y   ++ + KA  N +R+M + FD +  R
Sbjct: 123 VVTYTSLINSMCKAG-NLNRAM-EFFDQMHVR 152


>gi|224089100|ref|XP_002308636.1| predicted protein [Populus trichocarpa]
 gi|222854612|gb|EEE92159.1| predicted protein [Populus trichocarpa]
          Length = 607

 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 114/481 (23%), Positives = 201/481 (41%), Gaps = 40/481 (8%)

Query: 18  PSSSSTTTSPTSH-NPHRPTRPRFPTHLDAPYISSSARIICEILAHAS---SDDIESALA 73
           PS+    +SPTS+ NP+              Y  +    +C IL          + +AL 
Sbjct: 60  PSADQQNSSPTSNSNPN--------------YHQNDFFTLCNILKDPKIQLGPSLRTALD 105

Query: 74  CTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQ 131
            TGI P   L+  V      SP      F WA +  G + S   +N MV+ LGK   F  
Sbjct: 106 RTGIEPELGLIQSVFDHFDSSPKLLHSVFLWAEKKPGFQSSAALFNSMVNFLGKAREFGS 165

Query: 132 MWNAV--RVMKEDG--VLSLPTFASIFDSYCGAGKYDEAVMSFDVMS----MHGVEQDVV 183
            W  +  R+   +G  ++S  TFA +   Y  AG  + A+ +F+  S    +H  E    
Sbjct: 166 AWCLLLDRIGGNEGGDLVSSDTFAILIRRYTRAGMSEAAIRTFEYASSLDLIHNSEAGTS 225

Query: 184 AVNSLLSAICRQENQTSRALEFLNR-VKK--IVDPDGDSFAILLEGWEKEGNVEEANKTF 240
               LL ++C+ E     A ++ +R V+K     P    + ILL GW +   ++ A + +
Sbjct: 226 LFEILLDSLCK-EGHVRVATDYFDRKVEKDPCWVPSVRIYNILLNGWFRSRKLKHAERLW 284

Query: 241 GEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV 300
            EM ++    P  V+ Y T +    R ++V+ A++ +  MK E        ++  +D L 
Sbjct: 285 LEMKKK-NVKPS-VVTYGTLVEGYSRMRRVERAIELVDEMKREGIKSNAIVYNPIIDALA 342

Query: 301 KLNDSTHAVQLWD--IMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAF 358
           +       + + +   +   G    P +  YN+++   C   D+    +    M+    F
Sbjct: 343 EAGRFKEVLGMMEHFFLCEEG----PTISTYNSLVKGYCKAGDLVGASKILKMMISREVF 398

Query: 359 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 418
           P   TYN  F    K +++ E    + +MI++ + P  L     + ML + +  ++A++I
Sbjct: 399 PTPTTYNYFFRHFSKCRKIEEGMNLYTKMIESGYTPDRLTYHLLLKMLCEEERLDLAVQI 458

Query: 419 WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 478
              +   G     A++      L  + R  +     E+ML R I+   +T H+L   F  
Sbjct: 459 SKEMRARGCDMDLATSTMFTHLLCKMQRFEEAFAEFEDMLRRGIVPQYLTFHRLNDEFRK 518

Query: 479 E 479
           +
Sbjct: 519 Q 519


>gi|302758166|ref|XP_002962506.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
 gi|300169367|gb|EFJ35969.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
          Length = 807

 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 153/340 (45%), Gaps = 8/340 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           + + ++++ L K G+  +   A RV++E  V +L  + S+   +C AG   +A    + M
Sbjct: 227 WTYTVVINGLVKAGKVAE---AERVLQEMPVPTLANYTSVIGGHCKAGDMGKAYHLLEDM 283

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGN 232
              G + D +  N+L+   CR + +  RA E L  +K     PD  ++ IL+ G  +   
Sbjct: 284 KRKGYQGDNLTYNTLIHGHCRLQ-EIDRAYELLEEMKSNDFVPDIFTYDILIAGLCRAKR 342

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           + EA    G +    +  P +V++Y T +    +  +V++A +    M      P +  +
Sbjct: 343 LSEARDLLGTLRNEDDCTP-NVVSYNTLIDGFSKAARVNDAYQLFLEMVTAGQHPDVVTY 401

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           S  +  L     ++ A    + MVG    ++P + +Y++VI  LC   ++D     FD M
Sbjct: 402 STLIRGLCNAGRASEAHSYLEEMVGK--KILPKVPVYSSVISGLCRAGELDAASTVFDSM 459

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
           V +G  P+   YN +   L K  R+ + +    EM +    P  +   T I  L      
Sbjct: 460 VANGCQPNLAVYNSLIYGLCKTGRLCDAKLRVKEMTERGCSPDGVTYGTLIVGLCRWSRT 519

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 452
           + A +++   LE GI   E S N ++  LR L +   V R
Sbjct: 520 DEACDLYVRSLEQGIEISETSCNVVIASLRCLEQAQRVLR 559



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 107/420 (25%), Positives = 188/420 (44%), Gaps = 31/420 (7%)

Query: 83  LVHEVLQLSYDSPSSAVDFFRWAGRGQ--RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMK 140
           LV  +L +  +  S+ V FF WAG  Q  R + + +N   + L + G+ E+   A R+ K
Sbjct: 59  LVGVILHMVKNGESAMV-FFGWAGTRQDFRHTVHTYNCFYEALIRTGQCEE---AYRLFK 114

Query: 141 EDGVLSLP----TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
           E     L     T+  +    C  GK   A   ++ M   G+   V+    LL+A+C+  
Sbjct: 115 EKWPQELIPDSITYGILIRGLCNFGKLKLACSLYEEMVDRGLRPVVLTCKFLLNALCKSG 174

Query: 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
           N    AL +  ++  I  P   ++ IL++G  +   V+EA   F EM  +    P +   
Sbjct: 175 N-LELALRYFEKMSSI--PCAATWTILIDGLFRAIRVDEACYYFEEM--KHTAIPNN-WT 228

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
           Y   +  L++  +V EA + L+ M      PTL  +++ +    K  D   A  L + M 
Sbjct: 229 YTVVINGLVKAGKVAEAERVLQEMP----VPTLANYTSVIGGHCKAGDMGKAYHLLEDMK 284

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
             G+    + + YN +I   C   ++D  +   ++M  +   PD  TY+++   L + KR
Sbjct: 285 RKGYQ--GDNLTYNTLIHGHCRLQEIDRAYELLEEMKSNDFVPDIFTYDILIAGLCRAKR 342

Query: 377 VHEVEKFFHEMIKNEWQPTP--LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 434
           + E       + +NE   TP  ++  T I     A     A +++  ++  G  P   + 
Sbjct: 343 LSEARDLLGTL-RNEDDCTPNVVSYNTLIDGFSKAARVNDAYQLFLEMVTAGQHPDVVTY 401

Query: 435 NELLVGLRNLGRLSDVRRFAEEMLNRRIL----IYEVTMHKLKKAFYNESRSMRDIFDSL 490
           + L+ GL N GR S+   + EEM+ ++IL    +Y   +  L +A   E  +   +FDS+
Sbjct: 402 STLIRGLCNAGRASEAHSYLEEMVGKKILPKVPVYSSVISGLCRA--GELDAASTVFDSM 459



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 78/378 (20%), Positives = 155/378 (41%), Gaps = 10/378 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++N ++D   K  R    +     M   G    + T++++    C AG+  EA    + M
Sbjct: 365 SYNTLIDGFSKAARVNDAYQLFLEMVTAGQHPDVVTYSTLIRGLCNAGRASEAHSYLEEM 424

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
               +   V   +S++S +CR     + +  F + V     P+   +  L+ G  K G +
Sbjct: 425 VGKKILPKVPVYSSVISGLCRAGELDAASTVFDSMVANGCQPNLAVYNSLIYGLCKTGRL 484

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            +A     EM ER   +P+ V  Y T ++ L R  + DEA   L V   E      +   
Sbjct: 485 CDAKLRVKEMTER-GCSPDGV-TYGTLIVGLCRWSRTDEACD-LYVRSLEQGIEISETSC 541

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
           N   ++  L     A ++  +++  G +  P    Y  VI  LC  +++    +  + M+
Sbjct: 542 NV--VIASLRCLEQAQRVLRVVLATGNS--PTAFFYATVIESLCKENNLAEARQLLEDMI 597

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP- 412
             G  PD  T + +   + +  +      F  EM++   +P+    +T +  L  A +P 
Sbjct: 598 GAGIKPDGSTVDALVGAMCRQDKAVVAMAFLEEMVRLGSKPSVGTYSTLLNALFKAGKPS 657

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
           E  + +   I      P E     L+    N  ++ + R   +E+ ++  +   V  + L
Sbjct: 658 EAHVVLRRLISHTSCFPDELWYVGLIAAYSNQDQVEEARNVLQELKSKWGIQSIVAYNTL 717

Query: 473 KKAFYNESRSMRDIFDSL 490
            K  +  +R+++ +++ L
Sbjct: 718 LKGLF-RTRNLQMVYELL 734



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 67/310 (21%), Positives = 125/310 (40%), Gaps = 27/310 (8%)

Query: 93  DSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE-----DGVLSL 147
           D+ S+  D     G    L+ Y  N ++  L K GR       V+ M E     DGV   
Sbjct: 450 DAASTVFDSMVANGCQPNLAVY--NSLIYGLCKTGRLCDAKLRVKEMTERGCSPDGV--- 504

Query: 148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN 207
            T+ ++    C   + DEA   +      G+E    + N +++++        R LE   
Sbjct: 505 -TYGTLIVGLCRWSRTDEACDLYVRSLEQGIEISETSCNVVIASL--------RCLEQAQ 555

Query: 208 RVKKIVDPDGDS-----FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI 262
           RV ++V   G+S     +A ++E   KE N+ EA +   +M+      P+     +  + 
Sbjct: 556 RVLRVVLATGNSPTAFFYATVIESLCKENNLAEARQLLEDMIGA-GIKPDGS-TVDALVG 613

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL 322
            + R  +   A+ FL  M      P++  +S  L+ L K    + A  +   ++    + 
Sbjct: 614 AMCRQDKAVVAMAFLEEMVRLGSKPSVGTYSTLLNALFKAGKPSEAHVVLRRLIS-HTSC 672

Query: 323 MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
            P+ + Y  +I    N D V+       ++         + YN + + L + + +  V +
Sbjct: 673 FPDELWYVGLIAAYSNQDQVEEARNVLQELKSKWGIQSIVAYNTLLKGLFRTRNLQMVYE 732

Query: 383 FFHEMIKNEW 392
              EM +NE+
Sbjct: 733 LLREMKRNEF 742


>gi|242062936|ref|XP_002452757.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
 gi|241932588|gb|EES05733.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
          Length = 502

 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 104/414 (25%), Positives = 185/414 (44%), Gaps = 54/414 (13%)

Query: 78  IPTPDLVHEVLQLSYDSPSSAVDFF----RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMW 133
           IP P + + V++L +     A+ FF    R   R + LSP   +L +D+  +     Q+ 
Sbjct: 65  IPAP-VANAVIKLLWHHAPRALLFFHALLRLPERSRDLSPCTVDLALDLAARLRHPRQLT 123

Query: 134 NAVRVM-KEDGVLSLP-TFASIFDSYCGAGKY-DEAVMSF-DVMSMHGVEQDVVAVNSLL 189
           +++  +    G+   P TF  +F+ +  + +  D AV  F  +   HGV QD+   NSLL
Sbjct: 124 SSILALFPRHGLAFTPRTFPIMFERFAVSHRRPDHAVRFFLSLHRSHGVAQDLPLFNSLL 183

Query: 190 SAI----------------------------------CRQENQTSRALEFLNR-VKKIVD 214
            A+                                  CR ++ TSRAL+ L + V+  + 
Sbjct: 184 DALVKSRHAGKAASLVRALERRFPPDAVTYNTLADGWCRVKD-TSRALDILRQMVESGIA 242

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERF---EWNPEHVLAYETFLITLIRGKQVD 271
           P   ++ I+L+G+ + G ++ A   F +M +R    E     V++Y T L  L    Q+D
Sbjct: 243 PTKTTYNIILKGFFRSGQLQHAWDFFLQMKKRGSNDENCKPDVVSYTTVLHGLGVAGQLD 302

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA 331
           +A K    M  E C P++  ++  + +  K  +   AV ++D M+  G+  +PN++ Y  
Sbjct: 303 KARKVFDEMSREGCTPSIATYNALIQVTCKKGNVEDAVAVFDDMIRKGY--IPNVVTYTV 360

Query: 332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
           +I  LC+   +D   +  D+M   G  P+  TYN++   L +   + +    F  M K E
Sbjct: 361 LIRGLCHAGKIDRAMKLLDKMKREGCEPNVQTYNVLIGYLFEEGDIEKALHLFETMSKGE 420

Query: 392 W----QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 441
                Q T     +A+ +   A++  +A  +   +++ G LP     N +L GL
Sbjct: 421 ECLPNQDTYNIIISAMFVRKRAEDMAVAARMVVEMVDRGYLPRRFMFNRVLNGL 474



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 111/258 (43%), Gaps = 16/258 (6%)

Query: 96  SSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV------LSLP 148
           S A+D  R     G   +   +N+++    ++G+ +  W+    MK+ G         + 
Sbjct: 227 SRALDILRQMVESGIAPTKTTYNIILKGFFRSGQLQHAWDFFLQMKKRGSNDENCKPDVV 286

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           ++ ++      AG+ D+A   FD MS  G    +   N+L+   C++ N       F + 
Sbjct: 287 SYTTVLHGLGVAGQLDKARKVFDEMSREGCTPSIATYNALIQVTCKKGNVEDAVAVFDDM 346

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           ++K   P+  ++ +L+ G    G ++ A K   +M  + E    +V  Y   +  L    
Sbjct: 347 IRKGYIPNVVTYTVLIRGLCHAGKIDRAMKLLDKM--KREGCEPNVQTYNVLIGYLFEEG 404

Query: 269 QVDEALKFLRVM-KGENCFP---TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
            +++AL     M KGE C P   T     +A+ +  +  D   A ++   MV  G+  +P
Sbjct: 405 DIEKALHLFETMSKGEECLPNQDTYNIIISAMFVRKRAEDMAVAARMVVEMVDRGY--LP 462

Query: 325 NLIMYNAVI-GLLCNNDD 341
              M+N V+ GL+   + 
Sbjct: 463 RRFMFNRVLNGLMLTGNQ 480


>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
 gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
          Length = 1059

 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 91/385 (23%), Positives = 167/385 (43%), Gaps = 46/385 (11%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y++ +++    +  RF      +  M + G   S+ T  S+ + +C   ++ EAV   D 
Sbjct: 651 YSFTILIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDS 710

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M+  G+E +VV  N++++ +C+  +  + ALE                  +  G EK+G 
Sbjct: 711 MAELGLEPNVVIYNTVINGLCKNRD-LNNALE------------------IFYGMEKKGI 751

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           V +A                  + Y T +  L    +  +A + LR M      P + FF
Sbjct: 752 VADA------------------VTYNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFF 793

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  +D  VK  +   A  L+  M  I  ++ PN++ YN++I   C    + +    FD M
Sbjct: 794 TALIDTFVKEGNLLEAKNLYKEM--IRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLM 851

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
           V  G FPD +TYN +     K+KRV +  K F EM             T I     A + 
Sbjct: 852 VSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKL 911

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNRRILIYEVT 468
            +A +++N +++ G+ P   + N LL  L N G++       E++    ++  I+ Y + 
Sbjct: 912 NVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMDVDIITYNII 971

Query: 469 MHKLKKAFYNESRSMRDIFDSLERR 493
           +  + +   ++ +    +F SL R+
Sbjct: 972 IQGMCRN--DKVKEAWCLFRSLTRK 994



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/338 (23%), Positives = 156/338 (46%), Gaps = 11/338 (3%)

Query: 125  KNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV 183
            +  RF++  + V  M E G+  ++  + ++ +  C     + A+  F  M   G+  D V
Sbjct: 697  QGNRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAV 756

Query: 184  AVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
              N+L+S +C     T  A    + VK+ +DP+   F  L++ + KEGN+ EA   + EM
Sbjct: 757  TYNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEM 816

Query: 244  VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303
            + R   +P ++L Y + +       ++ +A     +M  + CFP +  ++  +    K  
Sbjct: 817  IRR-SVHP-NILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSK 874

Query: 304  DSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLT 363
                 ++L+  M   G  L+ +   YN +I   C    ++   + F++MV  G  PD +T
Sbjct: 875  RVEDGMKLFCEMTHQG--LVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVT 932

Query: 364  YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 423
            YN++ +CL  N ++ +      ++ KN+     +     I  +   D+ + A  ++  + 
Sbjct: 933  YNILLDCLCNNGKIEKALVMVEDLQKNQMDVDIITYNIIIQGMCRNDKVKEAWCLFRSLT 992

Query: 424  ENGILPLEASAN-ELLVGLRNLGRLSDVRRFAEEMLNR 460
              G+  L+A A   ++ GL   G    +RR A+++  R
Sbjct: 993  RKGV-KLDAIAYITMISGLCRNG----LRREADKLCTR 1025



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 145/336 (43%), Gaps = 13/336 (3%)

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206
           L +F  +   +C   +   A+     M   G +  +V   SLL   C + N+   A   +
Sbjct: 100 LYSFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLR-NRIHDAFSLV 158

Query: 207 -NRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
            + VK   +P+   +  L++   K G+V  A +   EM ++     + ++ Y T L  L 
Sbjct: 159 ASMVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAAD-LVTYNTLLTGLC 217

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN 325
              +  +A + LR M      P +  F+  +D  VK  +   A +L+  M  +  ++ PN
Sbjct: 218 YSGEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQM--LQSSIGPN 275

Query: 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 385
            + YN++I  LC +  + +  + FD M   G FP+ +TYN +     K++RV +  K F 
Sbjct: 276 TVTYNSLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQ 335

Query: 386 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
            M +           T I       +  +A +I+++++  G+ P   +   LL GL   G
Sbjct: 336 RMYREGLVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDIITHCILLHGLCVNG 395

Query: 446 RLSDV------RRFAEEMLNRRILIYEVTMHKLKKA 475
            +          R  E+ L   I+ Y + +H L KA
Sbjct: 396 EIGSAMVKFNDMRSGEKYLG--IVAYNIMIHGLCKA 429



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 68/308 (22%), Positives = 127/308 (41%), Gaps = 37/308 (12%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS--LPTFASIFDSYCGAGKYDEAVMSFDV 172
            +N ++D L KNG        +  M++ G L+  L T+ ++    C +G++ +A      
Sbjct: 172 VYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAARILRD 231

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M+   +  DV    +L+ A  +Q N       +   ++  + P+  ++  L+ G    G 
Sbjct: 232 MTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGR 291

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN------CF 286
           +  A KTF  M  +  +   +V+ Y T +    + ++V++ +K  + M  E        +
Sbjct: 292 LYHAKKTFDLMASKGCF--PNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTY 349

Query: 287 PTL--------------KFFSNALDILVKLNDSTHAVQLWDIMVG-------IGFNLMPN 325
            TL                FS  +   V  +  TH + L  + V        + FN M +
Sbjct: 350 NTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDIITHCILLHGLCVNGEIGSAMVKFNDMRS 409

Query: 326 ------LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
                 ++ YN +I  LC  D V+  +  F ++   G  PD+ TY ++   L KN    E
Sbjct: 410 GEKYLGIVAYNIMIHGLCKADKVEEAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRRE 469

Query: 380 VEKFFHEM 387
            ++ F  M
Sbjct: 470 ADELFRRM 477



 Score = 46.6 bits (109), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 58/144 (40%), Gaps = 1/144 (0%)

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
           F +  +L  +  +I   C    +        +M+  G  P  +T+  +        R+H+
Sbjct: 94  FGISHDLYSFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHD 153

Query: 380 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE-ASANELL 438
                  M+K+ ++P  +   T I  L    +  IA+E+ N + + G L  +  + N LL
Sbjct: 154 AFSLVASMVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLL 213

Query: 439 VGLRNLGRLSDVRRFAEEMLNRRI 462
            GL   G      R   +M  RRI
Sbjct: 214 TGLCYSGEWRQAARILRDMTKRRI 237



 Score = 41.6 bits (96), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 26/134 (19%), Positives = 59/134 (44%), Gaps = 1/134 (0%)

Query: 113  PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFD 171
             + +N ++    + G+          M + GV   + T+  + D  C  GK ++A++  +
Sbjct: 895  AFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVE 954

Query: 172  VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
             +  + ++ D++  N ++  +CR +        F +  +K V  D  ++  ++ G  + G
Sbjct: 955  DLQKNQMDVDIITYNIIIQGMCRNDKVKEAWCLFRSLTRKGVKLDAIAYITMISGLCRNG 1014

Query: 232  NVEEANKTFGEMVE 245
               EA+K    M E
Sbjct: 1015 LRREADKLCTRMKE 1028


>gi|224157081|ref|XP_002337799.1| predicted protein [Populus trichocarpa]
 gi|222869732|gb|EEF06863.1| predicted protein [Populus trichocarpa]
          Length = 367

 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 150/336 (44%), Gaps = 7/336 (2%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           A +G + S + +N +++ L K GR+ +    +  M   G+     T+ ++    C    +
Sbjct: 28  ADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNF 87

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAI 222
            EA   F  M   GV  D+V+ +SL++   R      +AL +   +KK  + PD   + +
Sbjct: 88  SEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNR-HLDQALVYFRDMKKFGLVPDNVIYTV 146

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+ G+ + GN+ EA K   EM+E  +     V+AY T L  L + K + +A K    M  
Sbjct: 147 LMHGYCRNGNMLEALKIRDEMLE--QGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVE 204

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
               P    F+  +    +  + T A+ L+  M     N+ P+++ YN +I   C   ++
Sbjct: 205 RGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQ--RNIKPDIVAYNTLIDGFCKVGEM 262

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
           +     +D M+    FP+ +TY ++         V E  + +  MI+   +PT + C T 
Sbjct: 263 EKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTV 322

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELL 438
           I     + +   A E    ++  G+ P   S N L+
Sbjct: 323 IKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLI 358



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 157/339 (46%), Gaps = 6/339 (1%)

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206
           + T+ ++  +YC  G  +EA    + M+  G++  +   N++++ +C++  + +RA   L
Sbjct: 1   MVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKK-GRYARAKGIL 59

Query: 207 NRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
             +  I + PD  ++  LL    +  N  EA + FGEM+ R    P+ ++++ + +    
Sbjct: 60  IEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEML-RQGVVPD-LVSFSSLMAVFS 117

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN 325
           R + +D+AL + R MK     P    ++  +    +  +   A+++ D M+  G  L  +
Sbjct: 118 RNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVL--D 175

Query: 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 385
           +I YN ++  LC    + +  + FD+MV  GA PD  T+  +     ++  + +    F 
Sbjct: 176 VIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFG 235

Query: 386 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
            M +   +P  +   T I       E E A E+W+ ++   I P   +   L+    ++G
Sbjct: 236 TMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVG 295

Query: 446 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMR 484
            +S+  R  + M+ + I    VT + + K +     S +
Sbjct: 296 HVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSK 334



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 79/349 (22%), Positives = 149/349 (42%), Gaps = 5/349 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N ++    + G  E+ +  +  M + G+  SL T+ +I +  C  G+Y  A      M
Sbjct: 3   TYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEM 62

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G+  D    N+LL   CR++N +     F   +++ V PD  SF+ L+  + +  ++
Sbjct: 63  LNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNRHL 122

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           ++A   F +M ++F   P++V+ Y   +    R   + EALK    M  + C   +  ++
Sbjct: 123 DQALVYFRDM-KKFGLVPDNVI-YTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYN 180

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             L+ L K    T A +L+D MV  G   +P+   +  +I   C + ++      F  M 
Sbjct: 181 TILNGLCKEKMLTDADKLFDEMVERG--ALPDFYTFTTLIHGHCQDGNMTKALSLFGTMT 238

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
                PD + YN + +   K   + +  + +  MI  +  P  +     I          
Sbjct: 239 QRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVS 298

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
            A  +W+ ++E GI P   + N ++ G    G  S    F   M+ + +
Sbjct: 299 EAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGV 347



 Score = 46.6 bits (109), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 71/177 (40%), Gaps = 13/177 (7%)

Query: 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 385
           ++ YN +IG  C    ++  F   + M   G  P   TYN I   L K  R    +    
Sbjct: 1   MVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILI 60

Query: 386 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL-VGLRN- 443
           EM+     P      T +      D    A EI+  +L  G++P   S + L+ V  RN 
Sbjct: 61  EMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNR 120

Query: 444 -----LGRLSDVRRFAEEMLNRRILIYEVTMHK-LKKAFYNESRSMRDIFDSLERRC 494
                L    D+++F     N   +IY V MH   +     E+  +RD  + LE+ C
Sbjct: 121 HLDQALVYFRDMKKFGLVPDN---VIYTVLMHGYCRNGNMLEALKIRD--EMLEQGC 172


>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g64320, mitochondrial; Flags: Precursor
 gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 730

 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 90/381 (23%), Positives = 179/381 (46%), Gaps = 17/381 (4%)

Query: 76  GIIPTPDLVHEVLQ--LSYDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQM 132
           G +P  +  ++V+     +D  + A     R   RG       +  +++ L K GR +  
Sbjct: 282 GCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAA 341

Query: 133 WNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEA--VMSFDVMSMHGVEQDVVAVNSLL 189
            +   R+ K + V+    F ++   +   G+ D+A  V+S D+++ +G+  DV   NSL+
Sbjct: 342 KDLFYRIPKPEIVI----FNTLIHGFVTHGRLDDAKAVLS-DMVTSYGIVPDVCTYNSLI 396

Query: 190 SAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFE 248
               + E     ALE L+ ++ K   P+  S+ IL++G+ K G ++EA     EM    +
Sbjct: 397 YGYWK-EGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSA--D 453

Query: 249 WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHA 308
               + + +   +    +  ++ EA++  R M  + C P +  F++ +  L ++++  HA
Sbjct: 454 GLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHA 513

Query: 309 VQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIF 368
           + L   M+  G  ++ N + YN +I       ++    +  ++MVF G+  D +TYN + 
Sbjct: 514 LWLLRDMISEG--VVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLI 571

Query: 369 ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 428
           + L +   V +    F +M+++   P+ ++C   I  L  +   E A+E    ++  G  
Sbjct: 572 KGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGST 631

Query: 429 PLEASANELLVGLRNLGRLSD 449
           P   + N L+ GL   GR+ D
Sbjct: 632 PDIVTFNSLINGLCRAGRIED 652



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 139/290 (47%), Gaps = 7/290 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G + + Y++ ++VD   K G+ ++ +N +  M  DG+  +   F  +  ++C   +  E
Sbjct: 418 KGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPE 477

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL-NRVKKIVDPDGDSFAILL 224
           AV  F  M   G + DV   NSL+S +C + ++   AL  L + + + V  +  ++  L+
Sbjct: 478 AVEIFREMPRKGCKPDVYTFNSLISGLC-EVDEIKHALWLLRDMISEGVVANTVTYNTLI 536

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
             + + G ++EA K   EMV  F+ +P   + Y + +  L R  +VD+A      M  + 
Sbjct: 537 NAFLRRGEIKEARKLVNEMV--FQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDG 594

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
             P+    +  ++ L +      AV+    MV  G    P+++ +N++I  LC    +++
Sbjct: 595 HAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGST--PDIVTFNSLINGLCRAGRIED 652

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
               F ++   G  PD++T+N +   L K   V++      E I++ + P
Sbjct: 653 GLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVP 702



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 92/425 (21%), Positives = 185/425 (43%), Gaps = 19/425 (4%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAG--RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVR 137
           TP  ++++L+L  +  S++++ F W G   G R S   + +++  LG NG F+ +   + 
Sbjct: 77  TPFQLYKLLELPLNV-STSMELFSWTGSQNGYRHSFDVYQVLIGKLGANGEFKTIDRLLI 135

Query: 138 VMKEDG-VLSLPTFASIFDSYCGAGKYDEAV-MSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
            MK++G V     F SI   Y  AG   +   +  ++ +++  E    + N +L  +   
Sbjct: 136 QMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSG 195

Query: 196 ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
                 A  F + + + + P   +F ++++ +     ++ A     +M  +    P  V+
Sbjct: 196 NCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMT-KHGCVPNSVI 254

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
            Y+T + +L +  +V+EAL+ L  M    C P  + F++ +  L K +    A ++ + M
Sbjct: 255 -YQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRM 313

Query: 316 VGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 375
           +  GF   P+ I Y  ++  LC    VD     F ++      P+ + +N +    + + 
Sbjct: 314 LIRGF--APDDITYGYLMNGLCKIGRVDAAKDLFYRI----PKPEIVIFNTLIHGFVTHG 367

Query: 376 RVHEVEKFFHEMIKNEWQPTPLNCA--TAITMLLDADEPEIAIEIWNYILENGILPLEAS 433
           R+ + +    +M+ + +   P  C   + I          +A+E+ + +   G  P   S
Sbjct: 368 RLDDAKAVLSDMVTS-YGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYS 426

Query: 434 ANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLE 491
              L+ G   LG++ +      EM    +    V  + L  AF  E R     +IF  + 
Sbjct: 427 YTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMP 486

Query: 492 RR-CK 495
           R+ CK
Sbjct: 487 RKGCK 491



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 80/380 (21%), Positives = 159/380 (41%), Gaps = 36/380 (9%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           +L TF  +  ++C   + D A+     M+ HG   + V   +L+ ++ +  N+ + AL+ 
Sbjct: 216 TLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKC-NRVNEALQL 274

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L  +  +   PD ++F  ++ G  K   + EA K    M+ R  + P+ +  Y   +  L
Sbjct: 275 LEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIR-GFAPDDI-TYGYLMNGL 332

Query: 265 IRGKQVDEALK-FLRVMKGE--------NCFPTLKFFSNALDILVKLNDSTHAV------ 309
            +  +VD A   F R+ K E        + F T     +A  +L  +  S   V      
Sbjct: 333 CKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTY 392

Query: 310 -----QLW-DIMVGIGFNLM---------PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
                  W + +VG+   ++         PN+  Y  ++   C    +D  +   ++M  
Sbjct: 393 NSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSA 452

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 414
            G  P+++ +N +     K  R+ E  + F EM +   +P      + I+ L + DE + 
Sbjct: 453 DGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKH 512

Query: 415 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKK 474
           A+ +   ++  G++    + N L+      G + + R+   EM+ +   + E+T + L K
Sbjct: 513 ALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIK 572

Query: 475 AF--YNESRSMRDIFDSLER 492
                 E    R +F+ + R
Sbjct: 573 GLCRAGEVDKARSLFEKMLR 592


>gi|255541126|ref|XP_002511627.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548807|gb|EEF50296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1163

 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 115/444 (25%), Positives = 199/444 (44%), Gaps = 43/444 (9%)

Query: 84  VHEVLQLSYDSPSSAVDFFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE- 141
           V EVL+L   +PS A+ FF WA   G   +  ++ LM+++LG+        N +  +K  
Sbjct: 89  VFEVLRL-IKTPSKALQFFNWAPELGFTHNDQSYFLMLEILGRARNLNVARNFLFSIKRR 147

Query: 142 -DGVLSLPT--FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198
            +G + L    F S+  SY  AG + E+V  F+ M   GV   VV  NSLL  I  +  +
Sbjct: 148 SNGTVKLEDRFFNSLIRSYGKAGLFQESVQVFNSMKSVGVSPSVVTFNSLL-LILLKRGR 206

Query: 199 TSRALEFLNRVKKI--VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
           T+ A    + +     V PD  +F IL+ G+ K   V+E  + F EM  RF+ +P+ ++ 
Sbjct: 207 TNMAQSVFDEMLSTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEM-SRFKCDPD-LVT 264

Query: 257 YETFLITLIRGKQVDEALKFLRVM--KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314
           Y T +  L R  +V+ A   +  M  K  N  P +  ++  +      ++   A+ +++ 
Sbjct: 265 YNTLVDGLCRAGKVNIAHNVVNGMVKKSTNLNPDVVTYTTLVRGYCMKHEIDEALVVFEE 324

Query: 315 MVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAF-PDSLTYNMIFECLIK 373
           MV  G  L PN I YN +I  LC    +D + + F+  +  G F PD+ T N +      
Sbjct: 325 MVSKG--LKPNEITYNTLIKGLCEVQKIDKIKQIFEGALGGGGFIPDTCTLNTLMNAHCN 382

Query: 374 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL----- 428
              +++  + F +M+    +P     +  I  L      E A ++++ + E  IL     
Sbjct: 383 AGNLNDALEVFEKMMVLNVRPDSATYSVLIRNLCQRGNFERAEQLFDELSEKEILLRDDG 442

Query: 429 --PLEASANELLVGLRNLGRLSDVRRFAEEMLNR--------RILI------------YE 466
             PL A+   +   L   G+ +   R   +++ R        +ILI            YE
Sbjct: 443 CTPLVAAYKSMFEFLCRNGKTAKAERVFRQLMKRGTQDPLSFKILIKGHCREGTFEAGYE 502

Query: 467 VTMHKLKKAFYNESRSMRDIFDSL 490
           + +  L++ F  +  + + + D L
Sbjct: 503 LLVLMLRRDFVPDLETYQSLIDGL 526



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 148/354 (41%), Gaps = 33/354 (9%)

Query: 112 SPYAWNLMVDVLGKNGR-------FEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYD 164
           S   +N ++ +L K GR       F++M +   V  +       TF  +   +C     D
Sbjct: 190 SVVTFNSLLLILLKRGRTNMAQSVFDEMLSTYGVTPDT-----YTFNILIRGFCKNSMVD 244

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICR--QENQTSRALEFLNRVKKIVDPDGDSFAI 222
           E    F  MS    + D+V  N+L+  +CR  + N     +  + +    ++PD  ++  
Sbjct: 245 EGFRFFKEMSRFKCDPDLVTYNTLVDGLCRAGKVNIAHNVVNGMVKKSTNLNPDVVTYTT 304

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK-FLRVMK 281
           L+ G+  +  ++EA   F EMV +    P  +  Y T +  L   +++D+  + F   + 
Sbjct: 305 LVRGYCMKHEIDEALVVFEEMVSK-GLKPNEI-TYNTLIKGLCEVQKIDKIKQIFEGALG 362

Query: 282 GENCFP---TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
           G    P   TL    NA      LND   A+++++ M+ +  N+ P+   Y+ +I  LC 
Sbjct: 363 GGGFIPDTCTLNTLMNAHCNAGNLND---ALEVFEKMMVL--NVRPDSATYSVLIRNLCQ 417

Query: 339 NDDVDNVFRFFDQMVFH-------GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
             + +   + FD++          G  P    Y  +FE L +N +  + E+ F +++K  
Sbjct: 418 RGNFERAEQLFDELSEKEILLRDDGCTPLVAAYKSMFEFLCRNGKTAKAERVFRQLMKRG 477

Query: 392 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
            Q  PL+    I         E   E+   +L    +P   +   L+ GL   G
Sbjct: 478 TQ-DPLSFKILIKGHCREGTFEAGYELLVLMLRRDFVPDLETYQSLIDGLLQKG 530



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 80/404 (19%), Positives = 164/404 (40%), Gaps = 65/404 (16%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSFD 171
            +N +VD L + G+     N V  M +      P   T+ ++   YC   + DEA++ F+
Sbjct: 264 TYNTLVDGLCRAGKVNIAHNVVNGMVKKSTNLNPDVVTYTTLVRGYCMKHEIDEALVVFE 323

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQE----------------------------------- 196
            M   G++ + +  N+L+  +C  +                                   
Sbjct: 324 EMVSKGLKPNEITYNTLIKGLCEVQKIDKIKQIFEGALGGGGFIPDTCTLNTLMNAHCNA 383

Query: 197 NQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE-----RFEWN 250
              + ALE   ++  + V PD  ++++L+    + GN E A + F E+ E     R +  
Sbjct: 384 GNLNDALEVFEKMMVLNVRPDSATYSVLIRNLCQRGNFERAEQLFDELSEKEILLRDDGC 443

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK--LNDSTHA 308
              V AY++    L R  +  +A +  R +        L F      IL+K    + T  
Sbjct: 444 TPLVAAYKSMFEFLCRNGKTAKAERVFRQLMKRGTQDPLSF-----KILIKGHCREGTFE 498

Query: 309 VQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIF 368
                +++ +  + +P+L  Y ++I  L    +    ++  ++M+     P++ T++ I 
Sbjct: 499 AGYELLVLMLRRDFVPDLETYQSLIDGLLQKGEPLVAYQTLEKMIKSSHVPETSTFHSIL 558

Query: 369 ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT-AITMLLDADEPEIAIEIWNYILENGI 427
             L+     HE  +F   M++ + +   +N +T  + +L  +   + A +I   +  NG 
Sbjct: 559 ARLLAKGCAHESARFIMLMLEGKIRQN-INLSTHTVRLLFGSGLRDKAFKIVGLLYANGY 617

Query: 428 LPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK 471
           +       EL      +G LS  R+F   +L  ++L++ +  H+
Sbjct: 618 V---VDMEEL------IGFLSHNRKF---LLAHKLLLFCLEKHQ 649



 Score = 47.0 bits (110), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 69/321 (21%), Positives = 129/321 (40%), Gaps = 17/321 (5%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMH-------GVEQDVVAVNSLLSAICRQENQTSR 201
           T++ +  + C  G ++ A   FD +S         G    V A  S+   +CR   +T++
Sbjct: 407 TYSVLIRNLCQRGNFERAEQLFDELSEKEILLRDDGCTPLVAAYKSMFEFLCRN-GKTAK 465

Query: 202 ALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFL 261
           A     ++ K    D  SF IL++G  +EG  E   +    M+ R ++ P+ +  Y++ +
Sbjct: 466 AERVFRQLMKRGTQDPLSFKILIKGHCREGTFEAGYELLVLMLRR-DFVPD-LETYQSLI 523

Query: 262 ITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFN 321
             L++  +   A + L  M   +  P    F + L  L+    +  + +   IM+ +   
Sbjct: 524 DGLLQKGEPLVAYQTLEKMIKSSHVPETSTFHSILARLLAKGCAHESARF--IMLMLEGK 581

Query: 322 LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 381
           +  N+ +    + LL  +   D  F+    +  +G   D      +   L  N++     
Sbjct: 582 IRQNINLSTHTVRLLFGSGLRDKAFKIVGLLYANGYVVD---MEELIGFLSHNRKFLLAH 638

Query: 382 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI-LPLEASANELLVG 440
           K     ++         C T I  L        A  ++  ++E G   PL    N L V 
Sbjct: 639 KLLLFCLEKHQNVDIDMCDTVIEGLCKMKRHSEAFGLYYELVEKGNNQPLRCLEN-LRVA 697

Query: 441 LRNLGRLSDVRRFAEEMLNRR 461
           L   GRL +V+  ++ M N+R
Sbjct: 698 LEARGRLEEVKFLSKRMPNKR 718


>gi|358347568|ref|XP_003637828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503763|gb|AES84966.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 529

 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 160/355 (45%), Gaps = 25/355 (7%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF ++    C  G+  +A+   D +   G + + V+  +L++ +C+   QT  ALEFL R
Sbjct: 84  TFTTLIKGLCLKGEIHKALHFHDKVVAQGFKLNQVSYGTLINGLCKV-GQTRAALEFLRR 142

Query: 209 V-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           +  K+V PD   +  +++G  K+  V +A   + EMV +    P  V+ Y T +  L   
Sbjct: 143 IDGKLVQPDVVMYNTIIDGLCKDKLVNDAFNLYFEMVAK-RICPS-VVTYNTLICGLCIM 200

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
            Q+ +A+  L  M  E+  PT+  FS  +D   K      A  ++ +M  +  ++ PN++
Sbjct: 201 AQLKDAIGLLHKMILEDINPTVYTFSILIDAFCKEGKMKEAKNVFAVM--MKEDVKPNIV 258

Query: 328 MYNAVI-GLLCNN-------------DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 373
            YN+++ G    N               VD     F++M F   +PD + YN + + L K
Sbjct: 259 TYNSLMDGHHLVNVVKKAKSIFNTMIKMVDEAMNLFEEMHFKQIYPDMVIYNSLIDGLCK 318

Query: 374 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 433
           + R     KF  EM      P      + +  L      + AIE+   + + GI P   +
Sbjct: 319 SGRTPYALKFIGEMHYRGQPPDIFTYNSLLDALCKNYHVDKAIELLTKLKDQGIQPSVCT 378

Query: 434 ANELLVGLRNLGRLSDVRRFAEEML----NRRILIYEVTMHKL-KKAFYNESRSM 483
            N L+ GL   GRL D  +  E++L    N  +  Y   +    KK  ++E+ +M
Sbjct: 379 YNILINGLCKSGRLKDAEKVFEDLLVKGYNTDVYTYNAMIKGFCKKGLFDETLAM 433



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 115/267 (43%), Gaps = 21/267 (7%)

Query: 137 RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
           +++ ED   ++ TF+ + D++C  GK  EA   F VM    V+ ++V  NSL+       
Sbjct: 212 KMILEDINPTVYTFSILIDAFCKEGKMKEAKNVFAVMMKEDVKPNIVTYNSLMDGH-HLV 270

Query: 197 NQTSRALEFLNRVKKIVD---------------PDGDSFAILLEGWEKEGNVEEANKTFG 241
           N   +A    N + K+VD               PD   +  L++G  K G    A K  G
Sbjct: 271 NVVKKAKSIFNTMIKMVDEAMNLFEEMHFKQIYPDMVIYNSLIDGLCKSGRTPYALKFIG 330

Query: 242 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
           EM   +   P  +  Y + L  L +   VD+A++ L  +K +   P++  ++  ++ L K
Sbjct: 331 EM--HYRGQPPDIFTYNSLLDALCKNYHVDKAIELLTKLKDQGIQPSVCTYNILINGLCK 388

Query: 302 LNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS 361
                 A ++++ ++  G+N   ++  YNA+I   C     D       +M   G  PD+
Sbjct: 389 SGRLKDAEKVFEDLLVKGYN--TDVYTYNAMIKGFCKKGLFDETLAMVSKMKDSGCSPDA 446

Query: 362 LTYNMIFECLIKNKRVHEVEKFFHEMI 388
               +I   L       +  K F EMI
Sbjct: 447 KNCEIIIRSLFDKGENDKAGK-FREMI 472



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 74/333 (22%), Positives = 137/333 (41%), Gaps = 26/333 (7%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  F  I  S   A  Y   V     M  +G+  ++V ++ L++   +          F
Sbjct: 11  SIFEFGKILGSLVKANHYSIVVSLHRQMEFNGLASNLVTLSILINCYSQLGQNALSFSVF 70

Query: 206 LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITL 264
            N +KK    D  +F  L++G   +G + +A     ++V + F+ N    ++Y T +  L
Sbjct: 71  ANILKKGYGSDAITFTTLIKGLCLKGEIHKALHFHDKVVAQGFKLNQ---VSYGTLINGL 127

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
            +  Q   AL+FLR + G+   P +  ++  +D L K      A  L+  MV     + P
Sbjct: 128 CKVGQTRAALEFLRRIDGKLVQPDVVMYNTIIDGLCKDKLVNDAFNLYFEMVAK--RICP 185

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           +++ YN +I  LC    + +      +M+     P   T++++ +   K  ++ E +  F
Sbjct: 186 SVVTYNTLICGLCIMAQLKDAIGLLHKMILEDINPTVYTFSILIDAFCKEGKMKEAKNVF 245

Query: 385 HEMIKNEWQPTPLNCATAI-----------------TMLLDADEPEIAIEIWNYILENGI 427
             M+K + +P  +   + +                 TM+   DE   A+ ++  +    I
Sbjct: 246 AVMMKEDVKPNIVTYNSLMDGHHLVNVVKKAKSIFNTMIKMVDE---AMNLFEEMHFKQI 302

Query: 428 LPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
            P     N L+ GL   GR     +F  EM  R
Sbjct: 303 YPDMVIYNSLIDGLCKSGRTPYALKFIGEMHYR 335



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 59/300 (19%), Positives = 115/300 (38%), Gaps = 23/300 (7%)

Query: 194 RQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH 253
             +N T    EF   +  +V  +  S  + L    +   +     T   ++  +    ++
Sbjct: 4   HHKNPTPSIFEFGKILGSLVKANHYSIVVSLHRQMEFNGLASNLVTLSILINCYSQLGQN 63

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH-AVQLW 312
            L++  F   L +G   D A+ F  ++KG                 + L    H A+   
Sbjct: 64  ALSFSVFANILKKGYGSD-AITFTTLIKG-----------------LCLKGEIHKALHFH 105

Query: 313 DIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 372
           D +V  GF L  N + Y  +I  LC          F  ++      PD + YN I + L 
Sbjct: 106 DKVVAQGFKL--NQVSYGTLINGLCKVGQTRAALEFLRRIDGKLVQPDVVMYNTIIDGLC 163

Query: 373 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 432
           K+K V++    + EM+     P+ +   T I  L    + + AI + + ++   I P   
Sbjct: 164 KDKLVNDAFNLYFEMVAKRICPSVVTYNTLICGLCIMAQLKDAIGLLHKMILEDINPTVY 223

Query: 433 SANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFY--NESRSMRDIFDSL 490
           + + L+      G++ + +     M+   +    VT + L    +  N  +  + IF+++
Sbjct: 224 TFSILIDAFCKEGKMKEAKNVFAVMMKEDVKPNIVTYNSLMDGHHLVNVVKKAKSIFNTM 283


>gi|42408236|dbj|BAD09393.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|125601932|gb|EAZ41257.1| hypothetical protein OsJ_25765 [Oryza sativa Japonica Group]
          Length = 798

 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 86/374 (22%), Positives = 166/374 (44%), Gaps = 11/374 (2%)

Query: 109 QRLSP--YAWNLMVDVLGKNGRFEQMWNA-VRVMKEDGVLSLPTFASIFDSYCGAGKYDE 165
           Q LSP    +N ++  L K    ++     VR++K   + +  T  S+   YC +GK ++
Sbjct: 232 QGLSPDVVTYNSIISALSKARAMDKAAVVLVRMVKNGAMPNRITHNSLLHGYCSSGKPND 291

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A+  F  M   GVE DV   N+L+  +C+          F + VK+   P+  ++  LL 
Sbjct: 292 AIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLH 351

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+  EG++ + +     MV R    P+H + +   + T  +  +VD+A+     M+ +  
Sbjct: 352 GYATEGSLVKMHHLLDMMV-RNGIQPDHYI-FNILIGTYTKHGKVDDAMLLFSKMRRQGL 409

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P    +   +D L  +     A+  +  ++  G  L P+ +++  +I  LC  D  D  
Sbjct: 410 NPDTVTYGIVMDALCMVGKVDDAMAQFGRLISEG--LTPDAVVFRNLIHGLCARDKWDKA 467

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
                +M+  G  P+++ +N +   L K   V   +  F  M++ + Q   +   T I  
Sbjct: 468 EELAVEMIGRGICPNNIFFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDG 527

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV----RRFAEEMLNRR 461
                + + A ++   ++ +G+ P E + N ++ G    GR+ D     R+ A + +N  
Sbjct: 528 YCLHGKVDEAAKLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPG 587

Query: 462 ILIYEVTMHKLKKA 475
           I+ Y   +  L +A
Sbjct: 588 IVTYSTILQGLFQA 601



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 154/353 (43%), Gaps = 6/353 (1%)

Query: 91  SYDSPSSAVDFFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLP 148
           S   P+ A+  F+   R G     + +N ++  L KNGR  +       M + G   +  
Sbjct: 285 SSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSA 344

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ ++   Y   G   +     D+M  +G++ D    N L+    +        L F   
Sbjct: 345 TYGTLLHGYATEGSLVKMHHLLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKM 404

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
            ++ ++PD  ++ I+++     G V++A   FG ++      P+ V+ +   +  L    
Sbjct: 405 RRQGLNPDTVTYGIVMDALCMVGKVDDAMAQFGRLISE-GLTPDAVV-FRNLIHGLCARD 462

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           + D+A +    M G    P   FF+  L+ L K      A  ++D+MV +  ++  ++I 
Sbjct: 463 KWDKAEELAVEMIGRGICPNNIFFNTLLNHLCKEGMVARAKNIFDLMVRV--DVQRDVIT 520

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           YN +I   C +  VD   +  + MV  G  P+ +TYN +     KN R+ +    F +M 
Sbjct: 521 YNTLIDGYCLHGKVDEAAKLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMA 580

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 441
                P  +  +T +  L  A     A E++ +++++GI     + N +L+GL
Sbjct: 581 SKGVNPGIVTYSTILQGLFQARRTAAAKELYLWMIKSGIKFDIGTYNIILLGL 633



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 131/301 (43%), Gaps = 13/301 (4%)

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTS----RALEFLNRVKKIVDPDGDSFAILL 224
           +FD +        +V +N  LS   R     +    R +  + R K  V P+  ++++++
Sbjct: 41  AFDELLHRPTTSSIVDLNRALSDAARHSPAVAISLFRRMVMVARPK--VPPNLITYSVVI 98

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF-LRVMKGE 283
           +   + G+++ A    G ++ R  W  E  + +   L  L   K+  EA+   LR M   
Sbjct: 99  DCCSRVGHLDLAFAALGRVI-RSGWTAE-AITFSPLLKALCDKKRTSEAMDIALRRMPVL 156

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV---GIGFNLMPNLIMYNAVI-GLLCNN 339
            C P +  ++  L  L   N S  A+ L   M+          P+++ YN VI GLL   
Sbjct: 157 GCTPNVFSYTILLKGLCDENRSQQALHLLHTMMVADDTRGGYPPDVVSYNTVINGLLREG 216

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
             +D  +  FDQM+  G  PD +TYN I   L K + + +       M+KN   P  +  
Sbjct: 217 RQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLVRMVKNGAMPNRITH 276

Query: 400 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
            + +     + +P  AI ++  +  +G+ P   + N L+  L   GR  + R+  + M+ 
Sbjct: 277 NSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVK 336

Query: 460 R 460
           R
Sbjct: 337 R 337



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 65/319 (20%), Positives = 128/319 (40%), Gaps = 44/319 (13%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N+++    K+G+ +        M+  G+     T+  + D+ C  GK D+A+  F  
Sbjct: 379 YIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQFGR 438

Query: 173 MSMHGVEQDVVAVNSLLSAICR----------------------------------QENQ 198
           +   G+  D V   +L+  +C                                   +E  
Sbjct: 439 LISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRGICPNNIFFNTLLNHLCKEGM 498

Query: 199 TSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
            +RA    + + ++ V  D  ++  L++G+   G V+EA K    MV   +    + + Y
Sbjct: 499 VARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMV--LDGVKPNEVTY 556

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHA--VQLWDIM 315
            T +    +  ++++A    R M  +   P +  +S  L  L +   +  A  + LW I 
Sbjct: 557 NTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQARRTAAAKELYLWMIK 616

Query: 316 VGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 375
            GI F++      YN ++  LC N+  D+  R F  +       ++ T+N++ + L+K  
Sbjct: 617 SGIKFDIGT----YNIILLGLCQNNCTDDALRIFQNLYLIDFHLENRTFNIMIDALLKGG 672

Query: 376 RVHEVEKFFHEMIKNEWQP 394
           R  E +  F  ++     P
Sbjct: 673 RHDEAKDLFASLLARGLVP 691



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 110/277 (39%), Gaps = 4/277 (1%)

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221
           + D A   FD M   G+  DVV  NS++SA+ +       A+  +  VK    P+  +  
Sbjct: 218 QLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLVRMVKNGAMPNRITHN 277

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            LL G+   G   +A   F  M  R    P+ V  Y T +  L +  +  EA K    M 
Sbjct: 278 SLLHGYCSSGKPNDAIGVFKRMC-RDGVEPD-VFTYNTLMGYLCKNGRSMEARKIFDSMV 335

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
                P    +   L              L D+MV  G  + P+  ++N +IG    +  
Sbjct: 336 KRGHKPNSATYGTLLHGYATEGSLVKMHHLLDMMVRNG--IQPDHYIFNILIGTYTKHGK 393

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
           VD+    F +M   G  PD++TY ++ + L    +V +    F  +I     P  +    
Sbjct: 394 VDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQFGRLISEGLTPDAVVFRN 453

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELL 438
            I  L   D+ + A E+   ++  GI P     N LL
Sbjct: 454 LIHGLCARDKWDKAEELAVEMIGRGICPNNIFFNTLL 490


>gi|356542070|ref|XP_003539494.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Glycine max]
          Length = 729

 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 103/401 (25%), Positives = 179/401 (44%), Gaps = 23/401 (5%)

Query: 77  IIPTPDLVHEVLQLSYDSPSSAVDFFRWAG-RGQRLSPYAWNLMVDVLGKNGRFEQMWNA 135
           I  +   V   L+L  D PS A+ FF+W   +G   +P ++ +M+++LG+        N 
Sbjct: 74  ITISKTTVLRTLRLIKD-PSKALRFFKWTQQKGFSHTPESYFIMLEILGRERNLNVARNF 132

Query: 136 VRVMKE--DGVLSLPT--FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
           +  +++   G + L    F S+  SY  AG + E++  F  M    V   VV  NSL+S 
Sbjct: 133 LFSIEKHSKGTVKLEDRFFNSLIRSYAEAGLFKESMKLFQTMKSIAVSPSVVTFNSLMSI 192

Query: 192 ICRQENQTSRALEFLNRVKKI--VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW 249
           + ++  +T+ A E  + +     V PD  ++ +L+ G+ K   V+E  + F EM E F  
Sbjct: 193 LLKR-GRTNMAKEVYDEMLGTYGVSPDTCTYNVLIRGFCKNSMVDEGFRFFREM-ESFNC 250

Query: 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVM--KGENCFPTLKFFSNALDILVKLNDSTH 307
           + + V+ Y T +  L R  +V  A   +  M  K E   P +  ++  +       +   
Sbjct: 251 DAD-VVTYNTLVDGLCRAGKVRIARNLVNGMGKKCEGLNPNVVTYTTLIRGYCMKQEVEE 309

Query: 308 AVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAF-PDSLTYNM 366
           A+ + + M   G  L PN+I YN ++  LC    +D +    ++M   G F PD+ T+N 
Sbjct: 310 ALVVLEEMTSRG--LKPNMITYNTLVKGLCEAHKLDKMKDVLERMKSDGGFSPDTFTFNT 367

Query: 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 426
           I         + E  K F  M K        + +T I  L    + ++A ++++ + E  
Sbjct: 368 IIHLHCCAGNLDEALKVFESMKKFRIPADSASYSTLIRSLCQKGDYDMAEQLFDELFEKE 427

Query: 427 IL-------PLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           IL       PL AS N +   L   G+     R   +++ R
Sbjct: 428 ILLSKFGSKPLAASYNPIFESLCEHGKTKKAERVIRQLMKR 468



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/242 (19%), Positives = 108/242 (44%), Gaps = 16/242 (6%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFA--SIFDSYCGAGK 162
             RG + +   +N +V  L +  + ++M + +  MK DG  S  TF   +I   +C AG 
Sbjct: 318 TSRGLKPNMITYNTLVKGLCEAHKLDKMKDVLERMKSDGGFSPDTFTFNTIIHLHCCAGN 377

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV--KKIV------D 214
            DEA+  F+ M    +  D  + ++L+ ++C Q+     A +  + +  K+I+       
Sbjct: 378 LDEALKVFESMKKFRIPADSASYSTLIRSLC-QKGDYDMAEQLFDELFEKEILLSKFGSK 436

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           P   S+  + E   + G  ++A +   ++++R   +P+   +Y T ++   +    +   
Sbjct: 437 PLAASYNPIFESLCEHGKTKKAERVIRQLMKRGTQDPQ---SYTTVIMGHCKEGAYESGY 493

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
           + L  M   +  P ++ +   +D  ++ +    A +  + M+   +   P    +++V+ 
Sbjct: 494 ELLMWMLRRDFLPDIEIYDYLIDGFLQKDKPLLAKETLEKMLKSSYQ--PKTSTWHSVLA 551

Query: 335 LL 336
            L
Sbjct: 552 KL 553


>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
          Length = 742

 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 94/426 (22%), Positives = 172/426 (40%), Gaps = 56/426 (13%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAV--- 167
            P  +  ++  LG  G  + M   V  M+ +G  + L    S  DSY G   +D+AV   
Sbjct: 73  GPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLGVVHSFLDSYEGQQLFDDAVDLI 132

Query: 168 ----------------------------------MSFDVMSMHGVEQDVVAVNSLLSAIC 193
                                               +  M   G++ DVV  N+L+ A+C
Sbjct: 133 LNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALC 192

Query: 194 RQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH 253
           R     +  +       + V PD  +F  L++G+ +EG++E A +    M+E        
Sbjct: 193 RAHQVRTAVIMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEM------G 246

Query: 254 VLAYETFLITLIRG----KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV 309
             A +  +  LI G     +V++AL +++    +   P    ++  ++ L + +   HA+
Sbjct: 247 CSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHAL 306

Query: 310 QLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFE 369
           ++ D+MV  G +  P++  YN V+  LC N  ++      +QMV  G  PD  T+N +  
Sbjct: 307 KVMDVMVQEGHD--PDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIA 364

Query: 370 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
            L    R+ E      ++      P        I  L    +P +A+ ++  +  +G  P
Sbjct: 365 ALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTP 424

Query: 430 LEASANELLVGLRNLGRLSDVRRFAEEMLN----RRILIYEVTMHKLKKAFYNESRSMRD 485
            E + N L+  L +LG+L       ++M +    R  + Y   +  L K    E     +
Sbjct: 425 DEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIE--EAEE 482

Query: 486 IFDSLE 491
           +FD ++
Sbjct: 483 VFDQMD 488



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 151/344 (43%), Gaps = 7/344 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N  V+ L +N         + VM ++G    + T+  + +  C  G+ +EA    + M 
Sbjct: 289 YNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMV 348

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNV 233
             G   D+   N+L++A+C   N+   AL+   +V  K V PD  +F IL+    K G+ 
Sbjct: 349 DRGCLPDITTFNTLIAALC-TGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDP 407

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
             A + F EM +     P+ V  Y T +  L    ++ +AL  L+ M+   C  +   ++
Sbjct: 408 HLALRLFEEM-KNSGCTPDEV-TYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYN 465

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +D L K      A +++D M   G +   N I +N +I  LC +  +D+ F   +QM+
Sbjct: 466 TIIDGLCKKMRIEEAEEVFDQMDLQGIS--RNAITFNTLIDGLCKDKKIDDAFELINQMI 523

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G  P+++TYN I     K   + +       M  N ++   +   T I  L  A   +
Sbjct: 524 SEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQ 583

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           +A+++   +   G+ P   + N +L  L     + D      EM
Sbjct: 584 VALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREM 627



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 146/350 (41%), Gaps = 8/350 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +N++V+ L KNG+ E+    +  M + G L  + TF ++  + C   + +EA+     
Sbjct: 322 FTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQ 381

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEG 231
           +++ GV  DV   N L++A+C+       AL     +K     PD  ++  L++     G
Sbjct: 382 VTVKGVSPDVYTFNILINALCKV-GDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLG 440

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            + +A     +M       P   + Y T +  L +  +++EA +    M  +        
Sbjct: 441 KLGKALDLLKDM--ESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAIT 498

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           F+  +D L K      A +L + M+  G  L PN I YN+++   C   D+       + 
Sbjct: 499 FNTLIDGLCKDKKIDDAFELINQMISEG--LQPNNITYNSILTHYCKQGDIKKAADILET 556

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M  +G   D +TY  +   L K  R     K    M     +PTP      +  L   + 
Sbjct: 557 MTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNN 616

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGL-RNLGRLSDVRRFAEEMLNR 460
              A+ ++  + E G  P   +   +  GL R  G + +   F  EM+++
Sbjct: 617 IRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDK 666



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 81/397 (20%), Positives = 158/397 (39%), Gaps = 15/397 (3%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP----TFASIFDS 156
           +     RG +     +N ++  L    R  Q+  AV +++E     +     TF ++   
Sbjct: 169 YSEMGARGIKPDVVTFNTLMKALC---RAHQVRTAVIMLEEMSSRGVAPDETTFTTLMQG 225

Query: 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDP 215
           +   G  + A+     M   G     V VN L++  C+   +   AL ++ + +    +P
Sbjct: 226 FVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKL-GRVEDALGYIQQEIADGFEP 284

Query: 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK 275
           D  ++   + G  +  +V  A K    MV+  E +   V  Y   +  L +  Q++EA  
Sbjct: 285 DQITYNTFVNGLCQNDHVGHALKVMDVMVQ--EGHDPDVFTYNIVVNCLCKNGQLEEAKG 342

Query: 276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGL 335
            L  M    C P +  F+  +  L   N    A+ L   +   G +  P++  +N +I  
Sbjct: 343 ILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVS--PDVYTFNILINA 400

Query: 336 LCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 395
           LC   D     R F++M   G  PD +TYN + + L    ++ +      +M       +
Sbjct: 401 LCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRS 460

Query: 396 PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 455
            +   T I  L      E A E+++ +   GI     + N L+ GL    ++ D      
Sbjct: 461 TITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELIN 520

Query: 456 EMLNRRILIYEVTMHKLKKAFYNES--RSMRDIFDSL 490
           +M++  +    +T + +   +  +   +   DI +++
Sbjct: 521 QMISEGLQPNNITYNSILTHYCKQGDIKKAADILETM 557


>gi|148906470|gb|ABR16388.1| unknown [Picea sitchensis]
          Length = 700

 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 91/404 (22%), Positives = 184/404 (45%), Gaps = 14/404 (3%)

Query: 81  PDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRV 138
           PD V +VL L  D+  +A+ FF+WA +  G   +  A+  M+D+LG+   F ++ + ++ 
Sbjct: 183 PDAVVKVLNLQTDA-QNALRFFQWADKQEGYDHNTDAYFTMIDILGRAKMFTELQSLLQK 241

Query: 139 MKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV--AVNSLLSAICRQ 195
           M+  G  ++     S   SY  +G++ E++ +F++M   G E  ++  A NS+L ++ + 
Sbjct: 242 MQTQGREITRSMLHSFVMSYGRSGRFKESLEAFNLMKEMGYEPGLIDTAYNSVLVSLVKN 301

Query: 196 ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
           +        F   +   V  +  ++  +++ +  +  +E+A K   +M++   + P+ V+
Sbjct: 302 KKLDMAENLFAQMINNGVSCNNLTYTSMIQCFFLKEKMEDAMKLLDDMIQN-NYAPD-VV 359

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
            Y   +  L + K +++A   L+ M+   C P +  ++  +  L  +     A++L  +M
Sbjct: 360 TYTIVISALCKRKMIEQAYGVLQKMRENGCEPNIYTYNALIQGLCAVRRPEEALELVTLM 419

Query: 316 VGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 375
              G  + PN+  Y  +   LC    +D     F++ +  G  P+ +TYN +     +  
Sbjct: 420 EQGG--VPPNIYTYTILTHGLCKLRRLDRAKEMFNEALARGLKPNRVTYNTLLNGYCRGS 477

Query: 376 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 435
           R+ E      EM +N+  P  +   T I  L+  ++   A+ + + +   G      + N
Sbjct: 478 RLIEAMDILKEMHQNDCTPDHVTYTTLIQGLVQGNQLPDALRMHDEMENKGYDVNFDTLN 537

Query: 436 ELLVGLRNLGRLSDVRRFAEEMLNRRILI----YEVTMHKLKKA 475
            L  GL  +G   D   F   M +R        Y + +H L  A
Sbjct: 538 ILARGLARVGNHKDASIFYRRMKDRGFAYSASDYYLAIHCLSTA 581



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 133/317 (41%), Gaps = 6/317 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+  +  + C     ++A      M  +G E ++   N+L+  +C    +   ALE +  
Sbjct: 360 TYTIVISALCKRKMIEQAYGVLQKMRENGCEPNIYTYNALIQGLCAVR-RPEEALELVTL 418

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           +++  V P+  ++ IL  G  K   ++ A + F E + R    P  V  Y T L    RG
Sbjct: 419 MEQGGVPPNIYTYTILTHGLCKLRRLDRAKEMFNEALAR-GLKPNRV-TYNTLLNGYCRG 476

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
            ++ EA+  L+ M   +C P    ++  +  LV+ N    A+++ D M   G+++  N  
Sbjct: 477 SRLIEAMDILKEMHQNDCTPDHVTYTTLIQGLVQGNQLPDALRMHDEMENKGYDV--NFD 534

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
             N +   L    +  +   F+ +M   G    +  Y +   CL     + E +   +EM
Sbjct: 535 TLNILARGLARVGNHKDASIFYRRMKDRGFAYSASDYYLAIHCLSTAGEMEEAQALLYEM 594

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
           I   + P      T I         + A  + N+++ENGI P   S N L+    N GR 
Sbjct: 595 INKGYSPNLTTYNTMIKGFCRQGRLDDADAMLNFMIENGIGPDTGSYNILIKEFHNQGRT 654

Query: 448 SDVRRFAEEMLNRRILI 464
            D  +     L R +++
Sbjct: 655 QDADQLYATALERGVVL 671



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 63/272 (23%), Positives = 117/272 (43%), Gaps = 23/272 (8%)

Query: 178 VEQDVVAVNSLLSAI------CRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
           V Q    VN +  AI      C Q+N       FLN + + ++PD      +++    + 
Sbjct: 147 VVQQEDTVNKICKAIEEDQWECLQDN-------FLNSMAQDLNPDA-----VVKVLNLQT 194

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           + + A + F +  ++ E    +  AY T +  L R K   E    L+ M+ +    T   
Sbjct: 195 DAQNALRFF-QWADKQEGYDHNTDAYFTMIDILGRAKMFTELQSLLQKMQTQGREITRSM 253

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI--MYNAVIGLLCNNDDVDNVFRFF 349
             + +    +      +++ +++M  +G+   P LI   YN+V+  L  N  +D     F
Sbjct: 254 LHSFVMSYGRSGRFKESLEAFNLMKEMGYE--PGLIDTAYNSVLVSLVKNKKLDMAENLF 311

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 409
            QM+ +G   ++LTY  + +C    +++ +  K   +MI+N + P  +     I+ L   
Sbjct: 312 AQMINNGVSCNNLTYTSMIQCFFLKEKMEDAMKLLDDMIQNNYAPDVVTYTIVISALCKR 371

Query: 410 DEPEIAIEIWNYILENGILPLEASANELLVGL 441
              E A  +   + ENG  P   + N L+ GL
Sbjct: 372 KMIEQAYGVLQKMRENGCEPNIYTYNALIQGL 403



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 95/225 (42%), Gaps = 4/225 (1%)

Query: 259 TFLITLIRGKQVDEALKFLRVMKGENCFPTL--KFFSNALDILVKLNDSTHAVQLWDIMV 316
           +F+++  R  +  E+L+   +MK     P L    +++ L  LVK      A  L+  M+
Sbjct: 256 SFVMSYGRSGRFKESLEAFNLMKEMGYEPGLIDTAYNSVLVSLVKNKKLDMAENLFAQMI 315

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
             G +   N + Y ++I      + +++  +  D M+ +   PD +TY ++   L K K 
Sbjct: 316 NNGVSC--NNLTYTSMIQCFFLKEKMEDAMKLLDDMIQNNYAPDVVTYTIVISALCKRKM 373

Query: 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 436
           + +      +M +N  +P        I  L     PE A+E+   + + G+ P   +   
Sbjct: 374 IEQAYGVLQKMRENGCEPNIYTYNALIQGLCAVRRPEEALELVTLMEQGGVPPNIYTYTI 433

Query: 437 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
           L  GL  L RL   +    E L R +    VT + L   +   SR
Sbjct: 434 LTHGLCKLRRLDRAKEMFNEALARGLKPNRVTYNTLLNGYCRGSR 478


>gi|115436834|ref|NP_001043148.1| Os01g0506100 [Oryza sativa Japonica Group]
 gi|56201661|dbj|BAD73125.1| leaf protein -like [Oryza sativa Japonica Group]
 gi|113532679|dbj|BAF05062.1| Os01g0506100 [Oryza sativa Japonica Group]
 gi|215717162|dbj|BAG95525.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 541

 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 102/443 (23%), Positives = 179/443 (40%), Gaps = 42/443 (9%)

Query: 51  SSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFF-RWAGRGQ 109
           S+A     +L+    +D  ++L   GI P P +  ++       P SA+    RWAG   
Sbjct: 17  SAAAAASTVLSILRGED-PASLPAAGIDPCPAVFQQLRPSLPTVPDSALPALARWAGEAT 75

Query: 110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS 169
                     V +L   G F   W  + +        L  FA +   Y   G+   A+ +
Sbjct: 76  ---------AVSLLTSRGLFAAAWRLL-LAPSPTPPPLAAFAPLVRRYARLGRAPAALRA 125

Query: 170 FDVMSMHG----VEQDVVAVNSLLS----AICRQENQTSRALEFLNRVKKI---VDPDGD 218
           F  +  H        D+ A  SLL+    A+C+ E     A+E   R ++      PD  
Sbjct: 126 FQFLRRHPDRYMAGGDIPAAASLLNMAVDALCK-EGHPRAAVELFERWRREEPDSPPDER 184

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++ ILL GW + G +++  K + EM  R       V+ Y T +  L   ++ D+A+  L 
Sbjct: 185 AYNILLHGWSRAGRLDKVGKLWAEM--RLAGVRPTVVTYGTLIEGLCVKRRPDQAIALLD 242

Query: 279 VMKGEN-------CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA 331
            M+ E        C P +   + A     +  D+   ++ + +     + + PN+  +N+
Sbjct: 243 EMREEGIEANLLTCNPIVYALAQA----GRFQDAHKVLEKFPL-----YGVAPNISTFNS 293

Query: 332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
           ++   C + D+         M   G  P + TYN  F    KN  V     F+ +MI N 
Sbjct: 294 LVMGYCKHGDLAGASSVLKVMTERGISPTTRTYNYFFMTFAKNSDVESGMNFYSKMIGNG 353

Query: 392 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 451
           + P  L     + ML  A+  E+ +++   +  +G  P  A++  L+  L    +  +  
Sbjct: 354 YSPDQLTYVLLVKMLSRANRLELVVQMIQEMRTHGFEPDLATSTMLIHLLCRRHQFEEAC 413

Query: 452 RFAEEMLNRRILIYEVTMHKLKK 474
              E+M  R I+   +T  KL +
Sbjct: 414 AEFEDMFKRGIVPQYITYQKLMR 436


>gi|357508583|ref|XP_003624580.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499595|gb|AES80798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 585

 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 109/432 (25%), Positives = 180/432 (41%), Gaps = 21/432 (4%)

Query: 43  HLDAPYISSSARIICEILAHASSD--DIESALACTGIIPTPDLVHEVLQLSYDSPSSAVD 100
           HL         + I +I+    S   +I+  L    +  + +LV EVL    +   +A  
Sbjct: 91  HLRDDGFVKDVKTILDIIHKPGSGPYEIKQKLEDCNVKASSELVVEVLSRVRNDWEAAFT 150

Query: 101 FFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE----DGVLSLPTFASIF 154
           FF WAG+  G   S   ++ M+ VLGK  RF+  W  V  M+     + +++  T   + 
Sbjct: 151 FFLWAGKQPGYDHSVREYHSMISVLGKMRRFDTAWALVEEMRRGKTGESIVTPQTLLIMI 210

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN-QTSRALEFLNRVKKIV 213
             YC       A+ +F        +  +     LLSA+CR +N Q +  L F N  K + 
Sbjct: 211 RKYCAVHDVGRAINTFYAFKRFNFQVGLYEFQGLLSALCRYKNVQDAEHLLFCN--KNVF 268

Query: 214 DPDGDSFAILLEGW-EKEGNVEEANKTFGEMVERFEWNPEH-VLAYETFLITLIRGKQVD 271
             D  SF I+L GW     +   A + + EM +R     +H V++Y + +    +  ++ 
Sbjct: 269 PLDTKSFNIILNGWCNLIVSARNAERIWEEMSKR---RIQHDVVSYASIISCYSKSSKLY 325

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA 331
             L+    MK  N  P  K ++  +  L K      AV L  I+     N+ P+ I YN+
Sbjct: 326 RVLQLFEQMKKRNITPDRKVYNAVIFSLAKNRMVKEAVNL--IIKMEDNNVTPDAITYNS 383

Query: 332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
           +I  LC    +D     F+ M+  G  P   T++  F  L   + V E+     E+  N 
Sbjct: 384 LIKPLCKARKIDEAKEIFNVMLERGISPSIRTFHAFFRILRVKEEVFELLDKMKELGCN- 442

Query: 392 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 451
             PT       I       + +    IWN + E+GI    +S   L+ GL    ++ +  
Sbjct: 443 --PTIETYIMLIRKFCRWRQLDEVKRIWNAMREDGIGHDRSSYIVLIHGLFLNCKVEEAY 500

Query: 452 RFAEEMLNRRIL 463
           ++  EM  +  L
Sbjct: 501 KYYIEMQEKGFL 512



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 113/256 (44%), Gaps = 14/256 (5%)

Query: 145 LSLPTFASIFDSYCG---AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSR 201
           L   +F  I + +C    + +  E +  ++ MS   ++ DVV+  S++S   +  ++  R
Sbjct: 270 LDTKSFNIILNGWCNLIVSARNAERI--WEEMSKRRIQHDVVSYASIISCYSKS-SKLYR 326

Query: 202 ALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF 260
            L+   ++KK  + PD   +  ++    K   V+EA     +M E     P+  + Y + 
Sbjct: 327 VLQLFEQMKKRNITPDRKVYNAVIFSLAKNRMVKEAVNLIIKM-EDNNVTPD-AITYNSL 384

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF 320
           +  L + +++DEA +   VM      P+++ F     IL          +L D M  +G 
Sbjct: 385 IKPLCKARKIDEAKEIFNVMLERGISPSIRTFHAFFRIL---RVKEEVFELLDKMKELGC 441

Query: 321 NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEV 380
           N  P +  Y  +I   C    +D V R ++ M   G   D  +Y ++   L  N +V E 
Sbjct: 442 N--PTIETYIMLIRKFCRWRQLDEVKRIWNAMREDGIGHDRSSYIVLIHGLFLNCKVEEA 499

Query: 381 EKFFHEMIKNEWQPTP 396
            K++ EM +  + P P
Sbjct: 500 YKYYIEMQEKGFLPEP 515


>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
 gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
          Length = 628

 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 106/464 (22%), Positives = 188/464 (40%), Gaps = 69/464 (14%)

Query: 89  QLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSL 147
           QL+Y+       F +   RG     + +++++  L K G  ++    +  ++E GV L++
Sbjct: 55  QLAYEK------FQQMQRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNV 108

Query: 148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHG-VEQDVVAVNSLLSAICRQENQTSRALEFL 206
            T++ + D  C A + D+A+  F  MS  G    DVV  NSLL  +C  E  +   + F 
Sbjct: 109 ITYSVVIDGCCKASRVDDALEIFKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFE 168

Query: 207 NRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
              K   +P+  S++ LL+G  K G ++EA + + EMVE+    P+ ++AY +F+  L +
Sbjct: 169 YMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEK-SCVPD-LVAYTSFVTGLCK 226

Query: 267 GKQV----------------------------------------------------DEAL 274
             +V                                                    DEA 
Sbjct: 227 ANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEAC 286

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG-FNLMPNLIMYNAVI 333
           K    M   N  P+ + F+  +  + K       V L+  M  +  F   PNL  YN ++
Sbjct: 287 KTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMV 346

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
             LC    +D      ++M  +G  PD +TY+ + + L K  ++        EM K    
Sbjct: 347 DNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVF 406

Query: 394 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 453
           P     A+ +  L  A + + A+     +   G  P   + N LL GL   GR+ +   F
Sbjct: 407 PDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITF 466

Query: 454 AEEMLNRR----ILIYEVTMHKLKKAFYNESRSMRDIFDSLERR 493
             +M+  +    +  Y + +  L ++   ++     IF  + +R
Sbjct: 467 LAKMVAAKCTPDVFSYTIIITALCRS--GQAAGAHAIFQEMVKR 508



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 102/454 (22%), Positives = 185/454 (40%), Gaps = 68/454 (14%)

Query: 98  AVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           A++ F+    G    P    +N ++  L    R  + +     M + G   ++ +++++ 
Sbjct: 127 ALEIFKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLL 186

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIV 213
           D  C AG+ DEA   ++ M       D+VA  S ++ +C+  N+ + A +   + V K  
Sbjct: 187 DGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKA-NRVAEACDCCRKMVTKGS 245

Query: 214 DPDGDSFAILLEGWEKEGNVEEAN-----------------KTFGEMVERFEWNPEHVLA 256
             D  +F+ ++    K+G+ EEA                  KTF EM+ R   +P     
Sbjct: 246 KADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISR--NHPPSAEL 303

Query: 257 YETFLITLIRGKQV-DEALKFLRV--MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
           + T +  + + K++ D  L F R+  MK   C P L+ ++  +D L K      A +L +
Sbjct: 304 FNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVN 363

Query: 314 IMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPD------------- 360
            M   G  L P+++ Y+A++  LC    +D      ++M   G FPD             
Sbjct: 364 EMANYG--LSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSK 421

Query: 361 ----------------------SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
                                  +TYN + + L K  R+ E   F  +M+  +  P   +
Sbjct: 422 AGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFS 481

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
               IT L  + +   A  I+  +++ G+LP     + LL GL   G    +   A E+L
Sbjct: 482 YTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNG----LEDLALELL 537

Query: 459 NRRILIYEVTMHKLKKAFYNESRSMRDIFDSLER 492
              +   +  MHK+      ++    D  + +ER
Sbjct: 538 KTSLCKPDFVMHKMVVDGLCKAGKAEDACEVVER 571



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 102/420 (24%), Positives = 170/420 (40%), Gaps = 71/420 (16%)

Query: 83  LVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMK 140
           +V EVL+      S+ V  F W GR  G + S + +N  +D L K    +  +   + M+
Sbjct: 7   VVGEVLR-HLGKISTIVRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQ 65

Query: 141 EDGVLSLP----TFASIFDSYCGAGKYDEA---------------VMSFDVM-------- 173
             G    P    T++ +    C AG+ D+A               V+++ V+        
Sbjct: 66  RRG---YPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKAS 122

Query: 174 -------------SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSF 220
                        +  G   DVV  NSLL  +C  E  +   + F    K   +P+  S+
Sbjct: 123 RVDDALEIFKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISY 182

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
           + LL+G  K G ++EA + + EMVE+    P+ ++AY +F+  L +  +V EA    R M
Sbjct: 183 STLLDGLCKAGRLDEACRLWEEMVEK-SCVPD-LVAYTSFVTGLCKANRVAEACDCCRKM 240

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
             +        FS  + IL K   +  A                     N +I  LC + 
Sbjct: 241 VTKGSKADAVAFSTVIGILCKKGHAEEA--------------------QNQMIEHLCRSG 280

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
            +D   + F++M+     P +  +N +   + K+KR+ +    F  M   +    P N  
Sbjct: 281 MLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLE 340

Query: 401 TAITM---LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           T   M   L  A + + A E+ N +   G+ P   + + L+ GL  LG+L       EEM
Sbjct: 341 TYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEM 400



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 86/403 (21%), Positives = 159/403 (39%), Gaps = 62/403 (15%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           +G +    A++ ++ +L K G  E+  N                  + +  C +G  DEA
Sbjct: 243 KGSKADAVAFSTVIGILCKKGHAEEAQN-----------------QMIEHLCRSGMLDEA 285

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD----PDGDSFAI 222
             +F+ M            N+L+ A+C+ +      L F  R+K + +    P+ +++ I
Sbjct: 286 CKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLF-QRMKSMKEFYCPPNLETYNI 344

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           +++   K   ++EA +   EM   +  +P+ V+ Y   +  L +  ++D A   L  M  
Sbjct: 345 MVDNLCKAKQLDEAQELVNEMAN-YGLSPD-VVTYSALVDGLCKLGKLDRACDLLEEMSK 402

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
           E  FP     ++ L+ L K     +A+   + M   G    P+L+ YN ++  LC    +
Sbjct: 403 EGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGST--PDLVTYNTLLDGLCKAGRI 460

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP-------- 394
           D    F  +MV     PD  +Y +I   L ++ +       F EM+K    P        
Sbjct: 461 DEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSL 520

Query: 395 ------------------TPLNCATAITM-------LLDADEPEIAIEIWNYILENGILP 429
                             T L C     M       L  A + E A E+   + + G  P
Sbjct: 521 LDGLARNGLEDLALELLKTSL-CKPDFVMHKMVVDGLCKAGKAEDACEVVERMADAG-FP 578

Query: 430 LEA-SANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK 471
            +A +   ++ GLR LG++   R+  ++       +  ++M K
Sbjct: 579 ADAFTYINVVRGLRKLGKVDKARQLVDDASETHTSVERLSMEK 621



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 91/225 (40%), Gaps = 9/225 (4%)

Query: 243 MVERFEW-----NPEH-VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
           +V  F+W       +H V  Y  FL  L +      A +  + M+     P    +S  L
Sbjct: 21  IVRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVL 80

Query: 297 DILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM-VFH 355
             L K  +   A +L   +   G  L  N+I Y+ VI   C    VD+    F  M    
Sbjct: 81  RGLCKAGELDKAKELLGQLRESGVKL--NVITYSVVIDGCCKASRVDDALEIFKTMSAGG 138

Query: 356 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 415
           G  PD +T+N + + L   +R+ E    F  M K   +P  ++ +T +  L  A   + A
Sbjct: 139 GCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEA 198

Query: 416 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
             +W  ++E   +P   +    + GL    R+++      +M+ +
Sbjct: 199 CRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTK 243


>gi|147825385|emb|CAN75494.1| hypothetical protein VITISV_030525 [Vitis vinifera]
          Length = 821

 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 152/371 (40%), Gaps = 17/371 (4%)

Query: 98  AVDFFRWA-----GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV----LSLP 148
           AV  F+WA      R +++      LMV +LG   R  Q   A+R++ E  V    L + 
Sbjct: 154 AVLLFKWAILNLYSRNEKIDNQLVELMVRILG---RESQHSVALRLLDEISVEEYSLDVR 210

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
            + +I  +Y   GKY+ A+  F+ M   G+   +V  N +L    +     ++ L  L+ 
Sbjct: 211 AWTTILHAYSRIGKYERAITMFEKMRKTGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDE 270

Query: 209 VKK-IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           ++   ++ D  + + ++    +EG ++EA K F  +  + E        Y + L    + 
Sbjct: 271 MRSNGLEFDEFTCSTVISACGREGLLDEARKFFARL--KSEGYVAGTFTYNSLLQVFGKA 328

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
               EAL  L+ M+  NC P L  ++  +   V+           D M+  G  +MPN I
Sbjct: 329 GIYSEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRKG--IMPNAI 386

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            Y  VI         D    FF QM   G  P+  TYN I   L K  R+ E+     +M
Sbjct: 387 TYTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDM 446

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
             N   P  +   T + M  +    +    ++  +   G  P   + N L+      G  
Sbjct: 447 RSNGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQ 506

Query: 448 SDVRRFAEEML 458
            DV +  EEM+
Sbjct: 507 IDVVKMYEEMI 517



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 75/378 (19%), Positives = 141/378 (37%), Gaps = 47/378 (12%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            WN M+ + G  G  + +    R MK  G   +  TF ++  +Y   G   + V  ++ M
Sbjct: 457 TWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEM 516

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G    V   N+LL+A+ R+ +  +     L+   K   P+  S++++L  + K GN 
Sbjct: 517 IKAGFTPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGN- 575

Query: 234 EEANKTFGEMVERFE---WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
                  G  +E+ E   +N  H+      L TL+       AL  +     E C     
Sbjct: 576 -------GRGIEKIEEEIYNG-HIFPSWILLRTLVLANFKRRALMGMERAFQEFC----- 622

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
                           H  +             P+L+++N+++ +   N   D       
Sbjct: 623 ---------------KHGYK-------------PDLVLFNSMLSIFAKNKMYDRAHEMLR 654

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
            +   G  PD +TYN + +   +     + E+    + K+  +P  ++  T I       
Sbjct: 655 LIRESGLQPDLVTYNSLMDMYARGGECWKGEEILKGIQKSGGKPDLVSYNTVIKGFCRQG 714

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 470
             + AI   + +  +GI P   + N  + G    G  S+V      M+       E+T +
Sbjct: 715 LMQEAIRTLSEMTISGIRPCIVTYNTFVAGYSGKGMFSEVEEVISYMIQHDCRPNELT-Y 773

Query: 471 KLKKAFYNESRSMRDIFD 488
           K+    Y + +  ++  D
Sbjct: 774 KIVVDGYCKGKKYKEAMD 791



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 77/353 (21%), Positives = 148/353 (41%), Gaps = 23/353 (6%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +  +++  GK G+ ++  +  R MKE G V ++ T+ +I        + +E +     M
Sbjct: 387 TYTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDM 446

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV-----DPDGDSFAILLEGWE 228
             +G   + V  N++L A+C  +       +++NRV + +     +P+ D+F  L+  + 
Sbjct: 447 RSNGCAPNSVTWNTML-AMCGNKGMH----KYVNRVFREMKSCGFEPNRDTFNALIGAYG 501

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           + G+  +  K + EM+ +  + P  V  Y   L  L R    + A   +  MK +   P 
Sbjct: 502 RCGSQIDVVKMYEEMI-KAGFTP-CVTTYNALLNALARRGDWEAAESVILDMKSKGFKPN 559

Query: 289 LKFFSNALDILVKLNDSTHAVQLWD-IMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFR 347
              +S  L+   K  +     ++ + I  G   ++ P+ I+   ++        +  + R
Sbjct: 560 ETSYSLMLNCYAKGGNGRGIEKIEEEIYNG---HIFPSWILLRTLVLANFKRRALMGMER 616

Query: 348 FFDQMVFHGAFPDSLTYNMIFECLIKNK---RVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
            F +   HG  PD + +N +     KNK   R HE+ +   E   +  QP  +   + + 
Sbjct: 617 AFQEFCKHGYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRE---SGLQPDLVTYNSLMD 673

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           M     E     EI   I ++G  P   S N ++ G    G + +  R   EM
Sbjct: 674 MYARGGECWKGEEILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEM 726



 Score = 47.0 bits (110), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 35/164 (21%), Positives = 76/164 (46%), Gaps = 5/164 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N M+ +  KN  +++    +R+++E G+   L T+ S+ D Y   G+  +       + 
Sbjct: 633 FNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGEEILKGIQ 692

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNV 233
             G + D+V+ N+++   CRQ      A+  L+ +    + P   ++   + G+  +G  
Sbjct: 693 KSGGKPDLVSYNTVIKGFCRQ-GLMQEAIRTLSEMTISGIRPCIVTYNTFVAGYSGKGMF 751

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            E  +    M++  +  P   L Y+  +    +GK+  EA+ F+
Sbjct: 752 SEVEEVISYMIQH-DCRPNE-LTYKIVVDGYCKGKKYKEAMDFV 793


>gi|413922833|gb|AFW62765.1| hypothetical protein ZEAMMB73_408366 [Zea mays]
          Length = 820

 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 91/356 (25%), Positives = 153/356 (42%), Gaps = 13/356 (3%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y    +V  L   GR E+    ++ MKE G   +   +A++ D +C   K +EA    + 
Sbjct: 231 YTHAALVKGLCDAGRGEEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKILNE 290

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M   G+   VV    +++A CR+   +     F +   K  +P+  ++  +++G+   G 
Sbjct: 291 MFDSGLMPCVVTCTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGK 350

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD----EALKFLRVMKGENCFPT 288
           V +A     +M E     P+ V+ Y      LIRG+ +D     A + LR+M+G      
Sbjct: 351 VYKAMALLDQMRE-CGVEPD-VVTYNL----LIRGQCIDGHIGSAFRLLRLMEGNGLAAD 404

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
              ++  +D L K      A  L+D +   G  + PN + +N VI  LC     D    F
Sbjct: 405 QYTYNVLIDALCKTGKVDEACSLFDGLEYRG--IRPNSVTFNTVINGLCKAGKFDVACTF 462

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
            + M+  G  PD+ TY+   E L K K   E   F  EM++ + +P+ +N    I  L +
Sbjct: 463 LENMISAGYAPDTYTYSPFIENLCKTKGSQEGLFFIDEMLQKDVKPSTVNYTIVINRLFN 522

Query: 409 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 464
                +A  IW  ++  G  P   +    +    N GRL +      EM   R ++
Sbjct: 523 ERNYGLATRIWGQMVSQGCSPDVVTYTTSVRAYCNEGRLDEAENVVTEMKKCRTIV 578



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 101/246 (41%), Gaps = 8/246 (3%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ ++  + C       A     +M   G   D    NSL+   CR +        F   
Sbjct: 131 TYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLEVAHDLFCKM 190

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
             +    D  S+A L+EG+ + G ++EA + F EM +     P+ +  +   +  L    
Sbjct: 191 PFRGFSQDAVSYAALIEGFCEAGRIDEALELFREMTQ-----PD-MYTHAALVKGLCDAG 244

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           + +E L  L+ MK     PT + ++  +D+  +   +  A ++ + M   G  LMP ++ 
Sbjct: 245 RGEEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSG--LMPCVVT 302

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
              V+   C    +    R F+ M F G  P+  TYN I +      +V++      +M 
Sbjct: 303 CTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMR 362

Query: 389 KNEWQP 394
           +   +P
Sbjct: 363 ECGVEP 368



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 77/366 (21%), Positives = 148/366 (40%), Gaps = 37/366 (10%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
           G G     Y +N+++D L K G+ ++  +    ++  G+  +  TF ++ +  C AGK+D
Sbjct: 398 GNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFD 457

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAIL 223
            A    + M   G   D    +  +  +C+ +  +   L F++  ++K V P   ++ I+
Sbjct: 458 VACTFLENMISAGYAPDTYTYSPFIENLCKTKG-SQEGLFFIDEMLQKDVKPSTVNYTIV 516

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           +     E N   A + +G+MV +   +P+ V+ Y T +       ++DEA   +  MK  
Sbjct: 517 INRLFNERNYGLATRIWGQMVSQ-GCSPD-VVTYTTSVRAYCNEGRLDEAENVVTEMKKC 574

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGL-------- 335
                   ++  +D    +  +  AV +   M G+    MPN   +  ++          
Sbjct: 575 RTIVDAMAYNTLIDGHTSIGQTDRAVTILKHMTGVAS--MPNHFTFFILLRHLLQRRLAE 632

Query: 336 --------LCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
                   +    ++ +VF  F+ M  +     + TY  I E   + +R+ EV      +
Sbjct: 633 HVPLKATSVWKTIELADVFELFELMKKNSVPSSARTYLSILEGFSEERRLDEVTSLV-SL 691

Query: 388 IKNEWQP-------TPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 440
           +K E  P         +NC   + M  D      A  +   ++ +G LP       LL G
Sbjct: 692 MKEENLPLNEDIYNALVNCFCKLRMYSD------AWALLCSMIGHGFLPNLIFYQYLLSG 745

Query: 441 LRNLGR 446
           L   G+
Sbjct: 746 LTAEGQ 751



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/202 (20%), Positives = 78/202 (38%), Gaps = 33/202 (16%)

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346
           PT   ++  +  L +  D  HA +   +MV  G+   P+   +N++I   C    ++   
Sbjct: 127 PTGATYNALIRALCRRADLRHAQRYLSLMVRSGWR--PDAFTFNSLILGYCRTQQLEVAH 184

Query: 347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE--------------- 391
             F +M F G   D+++Y  + E   +  R+ E  + F EM + +               
Sbjct: 185 DLFCKMPFRGFSQDAVSYAALIEGFCEAGRIDEALELFREMTQPDMYTHAALVKGLCDAG 244

Query: 392 ----------------WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 435
                           W+PT    A  + +     + E A +I N + ++G++P   +  
Sbjct: 245 RGEEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCT 304

Query: 436 ELLVGLRNLGRLSDVRRFAEEM 457
            ++      GR+S   R  E M
Sbjct: 305 IVVNAYCREGRMSGAVRVFESM 326



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 98/256 (38%), Gaps = 24/256 (9%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ +   +YC  G+ DEA      M       D +A N+L+        QT RA+  L  
Sbjct: 547 TYTTSVRAYCNEGRLDEAENVVTEMKKCRTIVDAMAYNTLIDGH-TSIGQTDRAVTILKH 605

Query: 209 VKKIVD-PDGDSFAILLEGWEKEGNVEEAN-------KT--FGEMVERFEWN-----PEH 253
           +  +   P+  +F ILL    +    E          KT    ++ E FE       P  
Sbjct: 606 MTGVASMPNHFTFFILLRHLLQRRLAEHVPLKATSVWKTIELADVFELFELMKKNSVPSS 665

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL-DILVKLNDSTHAVQLW 312
              Y + L      +++DE    + +MK EN  P  +   NAL +   KL   + A  L 
Sbjct: 666 ARTYLSILEGFSEERRLDEVTSLVSLMKEEN-LPLNEDIYNALVNCFCKLRMYSDAWALL 724

Query: 313 DIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 372
             M+G GF  +PNLI Y  ++  L      D     F    +     D + + +I +  I
Sbjct: 725 CSMIGHGF--LPNLIFYQYLLSGLTAEGQADRAKEIFRSSRWKEYNTDEIVWKVIIDGFI 782

Query: 373 KNKRVHEVEKFFHEMI 388
           +           H+MI
Sbjct: 783 RKGHA----DMCHDMI 794


>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 744

 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 144/336 (42%), Gaps = 10/336 (2%)

Query: 108 GQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
           GQ +SP  + +  +V  L     ++ +   +  M    +L  +  F+++ D+ C  GK  
Sbjct: 224 GQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVT 283

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
           EA    D+M   GVE DVV   +L+   C Q         F   V+K   PD  S+  L+
Sbjct: 284 EAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLI 343

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G+ K   +++A   F EM  R EW P+    Y T +  L    ++ +A+     M    
Sbjct: 344 NGYCKIHKIDKAMYLFEEMC-RKEWIPD-TKTYNTLMHGLCHVGRLQDAIALFHEMVARG 401

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI-GFNLMPNLIMYNAVIGLLCNNDDVD 343
             P L  +S  LD L K   + H  +   ++  I   NL P++ +YN +I  +C   +++
Sbjct: 402 QMPDLVTYSILLDSLCK---NCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELE 458

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
                F  +   G  P   TYN++   L K   ++E  K F EM  N+  P      T  
Sbjct: 459 AARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIA 518

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLV 439
              L  +E   AI++   +L  G    + S   LLV
Sbjct: 519 RGFLQNNETLRAIQLLEEMLARG-FSADVSTTTLLV 553



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 87/373 (23%), Positives = 154/373 (41%), Gaps = 43/373 (11%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  FA +  S      Y   +     M   GV  +V  +N L+++ C   N+   A   
Sbjct: 55  SIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHL-NRVGFAFSV 113

Query: 206 LNRVKKIV-DPDGDSFAILLEGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLIT 263
           L ++ K+   PD  +F  L+ G   EG + EA   F +M+ E F+ N   V+ Y T +  
Sbjct: 114 LAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPN---VVTYGTLING 170

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFN-- 321
           L +      A++ LR M+  NC P +  +++ +D L K    T A  L+  MVG G +  
Sbjct: 171 LCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPD 230

Query: 322 -------------------------------LMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
                                          ++P++++++ V+  LC    V       D
Sbjct: 231 IFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVD 290

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
            M+  G  PD +TY  + +       + E  K F  M++  + P  ++  T I       
Sbjct: 291 MMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIH 350

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR----ILIYE 466
           + + A+ ++  +     +P   + N L+ GL ++GRL D      EM+ R     ++ Y 
Sbjct: 351 KIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYS 410

Query: 467 VTMHKLKKAFYNE 479
           + +  L K  + E
Sbjct: 411 ILLDSLCKNCHLE 423



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 134/294 (45%), Gaps = 5/294 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           ++ +VD L K G+  +    V +M + GV   + T+ ++ D +C   + DEAV  FD+M 
Sbjct: 269 FSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMV 328

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G   DV++  +L++  C+          F    +K   PD  ++  L+ G    G ++
Sbjct: 329 RKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQ 388

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           +A   F EMV R +  P+ ++ Y   L +L +   ++EA+  L+ ++  N  P ++ ++ 
Sbjct: 389 DAIALFHEMVARGQM-PD-LVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNI 446

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
            +D + +  +   A  L+  +   G  L P++  YN +I  LC    ++   + F +M  
Sbjct: 447 IIDGMCRAGELEAARDLFSNLSSKG--LHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDG 504

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
           +   PD  TYN I    ++N       +   EM+   +          + ML D
Sbjct: 505 NDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSADVSTTTLLVEMLSD 558



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 85/375 (22%), Positives = 155/375 (41%), Gaps = 44/375 (11%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF ++    C  GK  EA+  FD M   G + +VV   +L++ +C+  N TS A+  L  
Sbjct: 128 TFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGN-TSAAIRLLRS 186

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER-------------------FE 248
           +++    PD   +  +++   K+  V EA   F +MV +                    E
Sbjct: 187 MEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCE 246

Query: 249 WN---------------PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           W                P+ V+ + T +  L +  +V EA + + +M      P +  ++
Sbjct: 247 WKHVTTLLNQMVNSKILPD-VVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYT 305

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +D     ++   AV+++D+MV  GF   P++I Y  +I   C    +D     F++M 
Sbjct: 306 TLMDGHCLQSEMDEAVKVFDMMVRKGF--APDVISYTTLINGYCKIHKIDKAMYLFEEMC 363

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
                PD+ TYN +   L    R+ +    FHEM+     P  +  +  +  L      E
Sbjct: 364 RKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLE 423

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR----RFAEEMLNRRILIYEVTM 469
            A+ +   I  + + P     N ++ G+   G L   R      + + L+  +  Y + +
Sbjct: 424 EAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMI 483

Query: 470 HKL-KKAFYNESRSM 483
           H L K+   NE+  +
Sbjct: 484 HGLCKRGLLNEANKL 498



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 31/143 (21%), Positives = 56/143 (39%), Gaps = 2/143 (1%)

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346
           P++  F+  L  + K+   +  + L   M    F + PN+   N +I   C+ + V   F
Sbjct: 54  PSIVDFAKLLTSIAKMKHYSTVLSLSTQM--DSFGVPPNVYTLNILINSFCHLNRVGFAF 111

Query: 347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406
               +++  G  PD  T+  +   L    ++ E    F +MI   +QP  +   T I  L
Sbjct: 112 SVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGL 171

Query: 407 LDADEPEIAIEIWNYILENGILP 429
                   AI +   + +    P
Sbjct: 172 CKVGNTSAAIRLLRSMEQGNCQP 194


>gi|225445998|ref|XP_002267263.1| PREDICTED: pentatricopeptide repeat-containing protein At2g18940
           [Vitis vinifera]
 gi|297735424|emb|CBI17864.3| unnamed protein product [Vitis vinifera]
          Length = 821

 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 152/371 (40%), Gaps = 17/371 (4%)

Query: 98  AVDFFRWA-----GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV----LSLP 148
           AV  F+WA      R +++      LMV +LG   R  Q   A+R++ E  V    L + 
Sbjct: 154 AVLLFKWAILNLYSRNEKIDNQLVELMVRILG---RESQHSVALRLLDEISVEEYSLDVR 210

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
            + +I  +Y   GKY+ A+  F+ M   G+   +V  N +L    +     ++ L  L+ 
Sbjct: 211 AWTTILHAYSRIGKYERAITMFEKMRKTGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDE 270

Query: 209 VKK-IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           ++   ++ D  + + ++    +EG ++EA K F  +  + E        Y + L    + 
Sbjct: 271 MRSNGLEFDEFTCSTVISACGREGLLDEARKFFARL--KSEGYVAGTFTYNSLLQVFGKA 328

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
               EAL  L+ M+  NC P L  ++  +   V+           D M+  G  +MPN I
Sbjct: 329 GIYSEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRKG--IMPNAI 386

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            Y  VI         D    FF QM   G  P+  TYN I   L K  R+ E+     +M
Sbjct: 387 TYTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDM 446

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
             N   P  +   T + M  +    +    ++  +   G  P   + N L+      G  
Sbjct: 447 RSNGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQ 506

Query: 448 SDVRRFAEEML 458
            DV +  EEM+
Sbjct: 507 IDVVKMYEEMI 517



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 75/378 (19%), Positives = 141/378 (37%), Gaps = 47/378 (12%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            WN M+ + G  G  + +    R MK  G   +  TF ++  +Y   G   + V  ++ M
Sbjct: 457 TWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEM 516

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G    V   N+LL+A+ R+ +  +     L+   K   P+  S++++L  + K GN 
Sbjct: 517 IKAGFTPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGN- 575

Query: 234 EEANKTFGEMVERFE---WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
                  G  +E+ E   +N  H+      L TL+       AL  +     E C     
Sbjct: 576 -------GRGIEKIEEEIYNG-HIFPSWILLRTLVLANFKRRALMGMERAFQEFC----- 622

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
                           H  +             P+L+++N+++ +   N   D       
Sbjct: 623 ---------------KHGYK-------------PDLVLFNSMLSIFAKNKMYDRAHEMLR 654

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
            +   G  PD +TYN + +   +     + E+    + K+  +P  ++  T I       
Sbjct: 655 LIRESGLQPDLVTYNSLMDMYARGGECWKGEEILKGIQKSGGKPDLVSYNTVIKGFCRQG 714

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 470
             + AI   + +  +GI P   + N  + G    G  S+V      M+       E+T +
Sbjct: 715 LMQEAIRTLSEMTISGIRPCIVTYNTFVAGYSGKGMFSEVEEVISYMIQHDCRPNELT-Y 773

Query: 471 KLKKAFYNESRSMRDIFD 488
           K+    Y + +  ++  D
Sbjct: 774 KIVVDGYCKGKKYKEAMD 791



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 77/353 (21%), Positives = 148/353 (41%), Gaps = 23/353 (6%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +  +++  GK G+ ++  +  R MKE G V ++ T+ +I        + +E +     M
Sbjct: 387 TYTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDM 446

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV-----DPDGDSFAILLEGWE 228
             +G   + V  N++L A+C  +       +++NRV + +     +P+ D+F  L+  + 
Sbjct: 447 RSNGCAPNSVTWNTML-AMCGNKGMH----KYVNRVFREMKSCGFEPNRDTFNALIGAYG 501

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           + G+  +  K + EM+ +  + P  V  Y   L  L R    + A   +  MK +   P 
Sbjct: 502 RCGSQIDVVKMYEEMI-KAGFTP-CVTTYNALLNALARRGDWEAAESVILDMKSKGFKPN 559

Query: 289 LKFFSNALDILVKLNDSTHAVQLWD-IMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFR 347
              +S  L+   K  +     ++ + I  G   ++ P+ I+   ++        +  + R
Sbjct: 560 ETSYSLMLNCYAKGGNGRGIEKIEEEIYNG---HIFPSWILLRTLVLANFKRRALMGMER 616

Query: 348 FFDQMVFHGAFPDSLTYNMIFECLIKNK---RVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
            F +   HG  PD + +N +     KNK   R HE+ +   E   +  QP  +   + + 
Sbjct: 617 AFQEFCKHGYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRE---SGLQPDLVTYNSLMD 673

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           M     E     EI   I ++G  P   S N ++ G    G + +  R   EM
Sbjct: 674 MYARGGECWKGEEILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEM 726



 Score = 47.0 bits (110), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 35/164 (21%), Positives = 76/164 (46%), Gaps = 5/164 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N M+ +  KN  +++    +R+++E G+   L T+ S+ D Y   G+  +       + 
Sbjct: 633 FNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGEEILKGIQ 692

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNV 233
             G + D+V+ N+++   CRQ      A+  L+ +    + P   ++   + G+  +G  
Sbjct: 693 KSGGKPDLVSYNTVIKGFCRQ-GLMQEAIRTLSEMTISGIRPCIVTYNTFVAGYSGKGMF 751

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            E  +    M++  +  P   L Y+  +    +GK+  EA+ F+
Sbjct: 752 SEVEEVISYMIQH-DCRPNE-LTYKIVVDGYCKGKKYKEAMDFV 793


>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 527

 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 135/281 (48%), Gaps = 7/281 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y + +++D L K G+ ++  N + VM ++GV  ++ ++ ++ D YC  G+   A   F  
Sbjct: 221 YTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHT 280

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEG 231
           M   GV  +V + N ++  +C+ + +   A+  L  V  K + P+  +++ L++G+ K G
Sbjct: 281 MVQKGVNPNVYSYNIMIDRLCKSK-RVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLG 339

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            +  A     EM  R +  P  V+ Y + L  L + + +D+A      MK     P    
Sbjct: 340 RITSALDLLKEMYHRGQ--PADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYT 397

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           ++  +D L K     +A +L+  ++  G  +  N+  YN +I  LC    +D       +
Sbjct: 398 YTALIDGLCKGGRHKNAQKLFQHLLVKGCRI--NVWTYNVMISGLCKEGMLDEALAMKSK 455

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 392
           M  +G  PD++T+ +I   L +  +  + EK  HEMI  + 
Sbjct: 456 MEENGCIPDAVTFEIIIRSLFEKDQNDKAEKLLHEMIAKDL 496



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 84/368 (22%), Positives = 153/368 (41%), Gaps = 39/368 (10%)

Query: 97  SAVDFFRW-AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           SA+   R    R  R +   +N ++D L K+    + ++    M   G+  ++ T++++ 
Sbjct: 133 SALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLI 192

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIV 213
             +C AG+  EA    + M +  +  +V     L+ A+C+ E +   A   L    K+ V
Sbjct: 193 YGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCK-EGKVKEAKNLLAVMTKEGV 251

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
            P+  S+  L++G+   G V+ A + F  MV++   NP +V +Y   +  L + K+VDEA
Sbjct: 252 KPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQK-GVNP-NVYSYNIMIDRLCKSKRVDEA 309

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG-------------- 319
           +  LR +  +N  P    +S+ +D   KL   T A+ L   M   G              
Sbjct: 310 MNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDA 369

Query: 320 -------------------FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPD 360
                                + PN   Y A+I  LC      N  + F  ++  G   +
Sbjct: 370 LCKNQNLDKATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCRIN 429

Query: 361 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 420
             TYN++   L K   + E      +M +N   P  +     I  L + D+ + A ++ +
Sbjct: 430 VWTYNVMISGLCKEGMLDEALAMKSKMEENGCIPDAVTFEIIIRSLFEKDQNDKAEKLLH 489

Query: 421 YILENGIL 428
            ++   +L
Sbjct: 490 EMIAKDLL 497



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/348 (22%), Positives = 153/348 (43%), Gaps = 10/348 (2%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F  I  S      Y  A+  F  M + G+E D+  +N L++  C    Q + +   L ++
Sbjct: 13  FNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHL-GQMTFSFTVLGKI 71

Query: 210 KKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRG 267
            K+   P+  +   L++G   +G V+++     ++V + F+ +    ++Y T L  L + 
Sbjct: 72  LKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQ---VSYATLLNGLCKI 128

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
            +   ALK LR+++  +  P +  ++  +D L K      A  L+  M   G  + PN+I
Sbjct: 129 GETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARG--IFPNVI 186

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            Y+ +I   C    +   F   ++M+     P+  TY ++ + L K  +V E +     M
Sbjct: 187 TYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVM 246

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
            K   +P  ++  T +       E + A ++++ +++ G+ P   S N ++  L    R+
Sbjct: 247 TKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRV 306

Query: 448 SDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLERR 493
            +      E+L++ ++   VT   L   F    R  S  D+   +  R
Sbjct: 307 DEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHR 354



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 79/349 (22%), Positives = 145/349 (41%), Gaps = 11/349 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N +V  L K   +    +  + M+  G+   L T   + + +C  G+   +      + 
Sbjct: 13  FNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTVLGKIL 72

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNV 233
             G + + + +N+L+  +C +  +  ++L F ++V  +    D  S+A LL G  K G  
Sbjct: 73  KLGYQPNTITLNTLMKGLCLK-GEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCKIGET 131

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
             A K    M+E     P +V+ Y T +  L + K V+EA      M     FP +  +S
Sbjct: 132 RSALKLL-RMIEDRSTRP-NVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYS 189

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +           A  L + M  I  N+ PN+  Y  ++  LC    V         M 
Sbjct: 190 TLIYGFCLAGQLMEAFGLLNEM--ILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMT 247

Query: 354 FHGAFPDSLTYNMIFE--CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
             G  P+ ++YN + +  CLI    V   ++ FH M++    P   +    I  L  +  
Sbjct: 248 KEGVKPNVVSYNTLMDGYCLI--GEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKR 305

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
            + A+ +   +L   ++P   + + L+ G   LGR++      +EM +R
Sbjct: 306 VDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHR 354


>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
 gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
          Length = 628

 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 106/464 (22%), Positives = 188/464 (40%), Gaps = 69/464 (14%)

Query: 89  QLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSL 147
           QL+Y+       F +   RG     + +++++  L K G  ++    +  ++E GV L++
Sbjct: 55  QLAYEK------FQQMQRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNV 108

Query: 148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHG-VEQDVVAVNSLLSAICRQENQTSRALEFL 206
            T++ + D  C A + D+A+  F  MS  G    DVV  NSLL  +C  E  +   + F 
Sbjct: 109 ITYSVVIDGCCKASRVDDALEIFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFE 168

Query: 207 NRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
              K   +P+  S++ LL+G  K G ++EA + + EMVE+    P+ ++AY +F+  L +
Sbjct: 169 YMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEK-SCVPD-LVAYTSFVTGLCK 226

Query: 267 GKQV----------------------------------------------------DEAL 274
             +V                                                    DEA 
Sbjct: 227 ANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEAC 286

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG-FNLMPNLIMYNAVI 333
           K    M   N  P+ + F+  +  + K       V L+  M  +  F   PNL  YN ++
Sbjct: 287 KTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMV 346

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
             LC    +D      ++M  +G  PD +TY+ + + L K  ++        EM K    
Sbjct: 347 DNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVF 406

Query: 394 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 453
           P     A+ +  L  A + + A+     +   G  P   + N LL GL   GR+ +   F
Sbjct: 407 PDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITF 466

Query: 454 AEEMLNRR----ILIYEVTMHKLKKAFYNESRSMRDIFDSLERR 493
             +M+  +    +  Y + +  L ++   ++     IF  + +R
Sbjct: 467 LAKMVAAKCTPDVFSYTIIITALCRS--GQAAGAHAIFQEMVKR 508



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 102/454 (22%), Positives = 185/454 (40%), Gaps = 68/454 (14%)

Query: 98  AVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           A++ F+    G    P    +N ++  L    R  + +     M + G   ++ +++++ 
Sbjct: 127 ALEIFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLL 186

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIV 213
           D  C AG+ DEA   ++ M       D+VA  S ++ +C+  N+ + A +   + V K  
Sbjct: 187 DGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKA-NRVAEACDCCRKMVTKGS 245

Query: 214 DPDGDSFAILLEGWEKEGNVEEAN-----------------KTFGEMVERFEWNPEHVLA 256
             D  +F+ ++    K+G+ EEA                  KTF EM+ R   +P     
Sbjct: 246 KADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISR--NHPPSAEL 303

Query: 257 YETFLITLIRGKQV-DEALKFLRV--MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
           + T +  + + K++ D  L F R+  MK   C P L+ ++  +D L K      A +L +
Sbjct: 304 FNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVN 363

Query: 314 IMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPD------------- 360
            M   G  L P+++ Y+A++  LC    +D      ++M   G FPD             
Sbjct: 364 EMANYG--LSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSK 421

Query: 361 ----------------------SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
                                  +TYN + + L K  R+ E   F  +M+  +  P   +
Sbjct: 422 AGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFS 481

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
               IT L  + +   A  I+  +++ G+LP     + LL GL   G    +   A E+L
Sbjct: 482 YTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNG----LEDLALELL 537

Query: 459 NRRILIYEVTMHKLKKAFYNESRSMRDIFDSLER 492
              +   +  MHK+      ++    D  + +ER
Sbjct: 538 KTSLCKPDFVMHKMVLDGLCKAGKAEDACEVVER 571



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 103/420 (24%), Positives = 170/420 (40%), Gaps = 71/420 (16%)

Query: 83  LVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMK 140
           +V EVL+      S+ V  F W GR  G + S + +N  +D L K    +  +   + M+
Sbjct: 7   VVGEVLR-HLGKISTIVRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQ 65

Query: 141 EDGVLSLP----TFASIFDSYCGAGKYDEA---------------VMSFDVM-------- 173
             G    P    T++ +    C AG+ D+A               V+++ V+        
Sbjct: 66  RRG---YPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKAS 122

Query: 174 -------------SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSF 220
                        S  G   DVV  NSLL  +C  E  +   + F    K   +P+  S+
Sbjct: 123 RVDDALEIFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISY 182

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
           + LL+G  K G ++EA + + EMVE+    P+ ++AY +F+  L +  +V EA    R M
Sbjct: 183 STLLDGLCKAGRLDEACRLWEEMVEK-SCVPD-LVAYTSFVTGLCKANRVAEACDCCRKM 240

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
             +        FS  + IL K   +  A                     N +I  LC + 
Sbjct: 241 VTKGSKADAVAFSTVIGILCKKGHAEEA--------------------QNQMIEHLCRSG 280

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
            +D   + F++M+     P +  +N +   + K+KR+ +    F  M   +    P N  
Sbjct: 281 MLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLE 340

Query: 401 TAITM---LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           T   M   L  A + + A E+ N +   G+ P   + + L+ GL  LG+L       EEM
Sbjct: 341 TYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEM 400



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 86/403 (21%), Positives = 159/403 (39%), Gaps = 62/403 (15%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           +G +    A++ ++ +L K G  E+  N                  + +  C +G  DEA
Sbjct: 243 KGSKADAVAFSTVIGILCKKGHAEEAQN-----------------QMIEHLCRSGMLDEA 285

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD----PDGDSFAI 222
             +F+ M            N+L+ A+C+ +      L F  R+K + +    P+ +++ I
Sbjct: 286 CKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLF-QRMKSMKEFYCPPNLETYNI 344

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           +++   K   ++EA +   EM   +  +P+ V+ Y   +  L +  ++D A   L  M  
Sbjct: 345 MVDNLCKAKQLDEAQELVNEMAN-YGLSPD-VVTYSALVDGLCKLGKLDRACDLLEEMSK 402

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
           E  FP     ++ L+ L K     +A+   + M   G    P+L+ YN ++  LC    +
Sbjct: 403 EGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGST--PDLVTYNTLLDGLCKAGRI 460

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP-------- 394
           D    F  +MV     PD  +Y +I   L ++ +       F EM+K    P        
Sbjct: 461 DEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSL 520

Query: 395 ------------------TPLNCATAITM-------LLDADEPEIAIEIWNYILENGILP 429
                             T L C     M       L  A + E A E+   + + G  P
Sbjct: 521 LDGLARNGLEDLALELLKTSL-CKPDFVMHKMVLDGLCKAGKAEDACEVVERMADAG-FP 578

Query: 430 LEA-SANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK 471
            +A +   ++ GLR LG++   R+  ++       +  ++M K
Sbjct: 579 ADAFTYISVVSGLRKLGKVDKARQLVDDASETHTSVERLSMEK 621



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 91/225 (40%), Gaps = 9/225 (4%)

Query: 243 MVERFEW-----NPEH-VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
           +V  F+W       +H V  Y  FL  L +      A +  + M+     P    +S  L
Sbjct: 21  IVRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVL 80

Query: 297 DILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG 356
             L K  +   A +L   +   G  L  N+I Y+ VI   C    VD+    F  M   G
Sbjct: 81  RGLCKAGELDKAKELLGQLRESGVKL--NVITYSVVIDGCCKASRVDDALEIFKTMSSGG 138

Query: 357 A-FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 415
              PD +T+N + + L   +R+ E    F  M K   +P  ++ +T +  L  A   + A
Sbjct: 139 GCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEA 198

Query: 416 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
             +W  ++E   +P   +    + GL    R+++      +M+ +
Sbjct: 199 CRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTK 243


>gi|255580386|ref|XP_002531020.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529395|gb|EEF31358.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 530

 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 96/411 (23%), Positives = 177/411 (43%), Gaps = 25/411 (6%)

Query: 80  TPDLVHEVLQLSYDSPSS---AVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWN 134
           + D V  VL   + + S+   A++FFR++ R    +P  +A+ + + +L +   FE+ W 
Sbjct: 91  STDFVENVLGRLFAAHSNGLKALEFFRFSLRHSHFNPSSFAFEMTLHILARMRYFEKAWE 150

Query: 135 AVRVMKEDG-----VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH---GVEQDVVAVN 186
              +M E G     +L+L +   +         Y++ + +F  M      G        N
Sbjct: 151 ---LMMEIGKSHPSLLTLKSMGIMLSKIAKFQSYEDTLEAFKRMEKTVFVGKTFGTEEFN 207

Query: 187 SLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
            LL A C Q  +   A     ++    +P+  +  ILL G++K  ++      + E+V R
Sbjct: 208 VLLQAFCSQR-EVKEARSVFQKMHDQFNPNTKTMNILLLGFKKARDITAMELFYHEIVRR 266

Query: 247 -FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS 305
            F+      L Y   +    +     + L+    M+ +NC PTL+  +  +       + 
Sbjct: 267 GFKATS---LTYNIRIDAYCKKGYFGDGLRIFEEMEKDNCPPTLETITTLIHGAGVARNI 323

Query: 306 THAVQLWDIMVGIG-FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTY 364
             A  L+D    IG  NL P+   YNA+I  L    D+++  R  D+M       DS+TY
Sbjct: 324 HKARHLFD---EIGKRNLKPDTGAYNALISSLVKCKDIESAMRLMDEMEEKHIGRDSVTY 380

Query: 365 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 424
           + IF  L+K      V   +H MI  ++ P        +         ++ +  W Y+L+
Sbjct: 381 HTIFFGLMKLNDTEGVCDLYHRMISRDFVPKTRTVVMLMKFFCVNSRLDLGLAFWQYMLD 440

Query: 425 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKA 475
            G  P   + + L+ GL + GRL +    +++ + R + + EV    L+++
Sbjct: 441 KGYCPHGHALDLLVTGLCSRGRLLEAYECSKQFVERGMRMSEVVYRMLERS 491


>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 643

 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 90/385 (23%), Positives = 168/385 (43%), Gaps = 40/385 (10%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N+M++VL K G+ ++  + +  M+  GV  ++ T+ ++   YC  G+ + A M  D+
Sbjct: 237 YTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDI 296

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEG 231
           M   GVE D     SL+S +C+   +   A   L ++K+I + P   ++  L++G+  +G
Sbjct: 297 MKNRGVEPDSYTYGSLISGMCKG-GKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKG 355

Query: 232 NVEEANKTFGEMVERF------EWN----------------------------PEHVLAY 257
           ++ +A     EMV R        +N                            P+ +  Y
Sbjct: 356 DLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSI-TY 414

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317
              +    R     +A      M  +   PTL  +++ + +L K N    A  L++ ++ 
Sbjct: 415 NILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIR 474

Query: 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
            G +  P+LIM+NA+I   C N ++D  F    +M      PD +TYN + +   +  +V
Sbjct: 475 EGAS--PDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKV 532

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 437
            E  +   EM +   +P  ++  T I+      +   A  I + +L  G  P   + N L
Sbjct: 533 EEARELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNAL 592

Query: 438 LVGLRNLGRLSDVRRFAEEMLNRRI 462
           + GL    +        +EM+++ I
Sbjct: 593 IQGLCKNQQGDLAEELLKEMVSKGI 617



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 95/432 (21%), Positives = 180/432 (41%), Gaps = 14/432 (3%)

Query: 71  ALACTGIIPTPDLVHEVLQLSYDSPSSAVD--FFRWAGRGQRL---SPYAWNLMVDVLGK 125
           A+A     P+P     +L+ + +S  + V   F   A    RL   S   +++++    +
Sbjct: 119 AVAVVSRSPSPKSTLHLLKQTIESRVAGVKDVFHELAITRDRLGTKSSIVFDMLIRACCE 178

Query: 126 NGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVA 184
             R +  +    +MKE GV+  + TF ++   +    + +   + +  M    ++  V  
Sbjct: 179 LKRGDDAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEMFRLKIKSTVYT 238

Query: 185 VNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
            N +++ +C+ E +  +A +F+  ++ + V P+  ++  ++ G+   G VE A      M
Sbjct: 239 FNIMINVLCK-EGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIM 297

Query: 244 VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303
             R    P+    Y + +  + +G +++EA   L  MK     PT   ++  +D      
Sbjct: 298 KNR-GVEPDSY-TYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKG 355

Query: 304 DSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLT 363
           D   A    D MV     ++P +  YN +I  L     +D        M   G  PDS+T
Sbjct: 356 DLVKAFGYRDEMVRRA--ILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSIT 413

Query: 364 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 423
           YN++     +     +      EMI    QPT +   + I +L   +  + A +++  I+
Sbjct: 414 YNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKII 473

Query: 424 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR-- 481
             G  P     N L+ G    G L       +EM  R I+  EVT + L +    E +  
Sbjct: 474 REGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVE 533

Query: 482 SMRDIFDSLERR 493
             R++   ++RR
Sbjct: 534 EARELLKEMKRR 545


>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
 gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
          Length = 609

 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 164/386 (42%), Gaps = 46/386 (11%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMS 174
           +  +VD L ++G+ ++    VR MK  GV     TF+++   +C A K DEA+  +  + 
Sbjct: 84  YTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEIL 143

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD----PDGDSFAILLEGWEKE 230
                 D V+ ++L++ +CR E +   A E    ++   D    PD  ++  L++G+ K 
Sbjct: 144 TSSCRLDAVSSSALITGLCR-ERRIGEAYELFQEMEMREDGAWKPDVVTYTALIDGFCKS 202

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           GN+E+A K  G M  R +  P +V+ Y + L  L +   +D+AL   R M  + C P + 
Sbjct: 203 GNLEKAMKMLGVMEGR-KCVP-NVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVV 260

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVG-------IGFN---------------------- 321
            ++  +  L   +    A  L D M         + +N                      
Sbjct: 261 TYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEM 320

Query: 322 ----LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM-VFHGAFPDSLTYNMIFECLIKNKR 376
                +P+ I Y  ++   CN   ++      + M    G  PD +TY+++     + KR
Sbjct: 321 AAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKR 380

Query: 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 436
             E  +F  EMI     P  +  ++ I  L  A     A+E+    L+N   P   +   
Sbjct: 381 FVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEV----LKNVDKPDVVTYTI 436

Query: 437 LLVGLRNLGRLSDVRRFAEEMLNRRI 462
           ++ GL    R  +     EEM+N+R+
Sbjct: 437 VIEGLCGTDRTEEALTLLEEMVNKRV 462



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/376 (22%), Positives = 165/376 (43%), Gaps = 53/376 (14%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS--LPTFASIFDSYCGAGKYDEAV-MSFDV 172
           +N++V+ L K     + +  ++ M++   ++  L T++++ + +C  G+ D A  +  ++
Sbjct: 12  YNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREM 71

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEG 231
           ++  G+  DVV   S++  +CR + +  RA E +  +K K V+PD  +F+ L+ GW    
Sbjct: 72  VTRDGMAPDVVTYTSVVDGLCR-DGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNAR 130

Query: 232 NVEEANKTFGEMVE---RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF-- 286
            V+EA K + E++    R +      ++    +  L R +++ EA +  + M+       
Sbjct: 131 KVDEALKLYKEILTSSCRLD-----AVSSSALITGLCRERRIGEAYELFQEMEMREDGAW 185

Query: 287 -PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P +  ++  +D   K  +   A+++  +M G     +PN++ Y++++  LC   D+D  
Sbjct: 186 KPDVVTYTALIDGFCKSGNLEKAMKMLGVMEG--RKCVPNVVTYSSLLHGLCKAGDLDQA 243

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
              F +M   G  P+ +TY  +   L    +V        EM           C  A T+
Sbjct: 244 LDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTA--------TCCPADTV 295

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 465
                                      S N LL G   LGR+ + ++  +EM  +  L  
Sbjct: 296 ---------------------------SYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPD 328

Query: 466 EVTMHKLKKAFYNESR 481
            +T   L + F N SR
Sbjct: 329 RITYTCLVRGFCNASR 344



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 129/319 (40%), Gaps = 12/319 (3%)

Query: 108 GQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
           G++  P    ++ ++  L K G  +Q  +  R M   G + ++ T+ ++    C A K D
Sbjct: 217 GRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVD 276

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
            A +  D M+      D V+ N+LL   CR          F     K   PD  ++  L+
Sbjct: 277 AARLLMDEMTATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLV 336

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G+     +EEA      M      +P+ V+ Y   +    R K+  EA +F++ M   N
Sbjct: 337 RGFCNASRLEEARFLLENMKTAAGIDPD-VVTYSIVVAGYSRAKRFVEAAEFIQEMIARN 395

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL-MPNLIMYNAVIGLLCNNDDVD 343
             P    +S+ +D L K     HA+++         N+  P+++ Y  VI  LC  D  +
Sbjct: 396 VAPNAVTYSSLIDGLCKAGRVNHAMEVLK-------NVDKPDVVTYTIVIEGLCGTDRTE 448

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
                 ++MV     P   T+N +   L +   + E  K    M  +  +P  +   T +
Sbjct: 449 EALTLLEEMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLL 508

Query: 404 TMLLDADEPEIAIEIWNYI 422
                    EIA E++  +
Sbjct: 509 EGFSRTGRMEIAYELFEVM 527



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 96/212 (45%), Gaps = 12/212 (5%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
           ++ ++D L K GR     +A+ V+K      + T+  + +  CG  + +EA+   + M  
Sbjct: 403 YSSLIDGLCKAGRVN---HAMEVLKNVDKPDVVTYTIVIEGLCGTDRTEEALTLLEEMVN 459

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEE 235
             VE  V   NS++ A+CR  +        +      ++P   ++  LLEG+ + G +E 
Sbjct: 460 KRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEI 519

Query: 236 ANKTFGEMVERFEWN-------PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           A + F  M  + + +       PE   A+   +  L + +++D+A+  +  ++   C P 
Sbjct: 520 AYELFEVMRRKAKKSSSAANLVPEQ--AFSALIRGLCKAREIDKAMAVVEELRSRECEPA 577

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGF 320
            +     +D L++   +  A +L + +  +G 
Sbjct: 578 EEDCLAIVDGLLRAGRTEEAGKLINSISKVGL 609


>gi|242065566|ref|XP_002454072.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
 gi|241933903|gb|EES07048.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
          Length = 820

 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 82/360 (22%), Positives = 151/360 (41%), Gaps = 44/360 (12%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEA 166
           G R +  A+  +VD+  +  + E+    +  M ++G++    T  ++ ++YC  G+   A
Sbjct: 260 GWRPATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPCAVTCTAVVNAYCREGRMSGA 319

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLE 225
           V  F+ M + G E +V   N+++   C    +  +A+  L+++++  V+PD  ++ +L+ 
Sbjct: 320 VRVFESMKLKGCEPNVWTYNAMVQGFC-NVGKVYKAMALLDQMRECGVEPDVVTYNLLIR 378

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G   +G++E                                      A + LR+M+G   
Sbjct: 379 GQCIDGHIES-------------------------------------AFRLLRLMEGNGL 401

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF-NLMPNLIMYNAVIGLLCNNDDVDN 344
                 ++  +D L K      A  L+D   G+ +  + PN + +N VI  LC     D 
Sbjct: 402 AADQYTYNVLIDALCKTGKVDEACSLFD---GLEYRGIRPNSVTFNTVINGLCKGGKFDV 458

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
              F ++MV  G  PD+ TY+   E L K K   E   F  EM++ + +P+ +N    I 
Sbjct: 459 ACTFLEKMVSAGCAPDTYTYSPFIENLCKTKGSREGLSFIDEMLQKDVKPSTVNYTIVID 518

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 464
            L       +A  IW  ++  G  P   +    +    N GRL +      EM    I++
Sbjct: 519 RLFKERNYGLATRIWGQMVSLGCSPDVVTYTTSVRAYCNEGRLHEAENVVMEMKKGGIIV 578



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 125/311 (40%), Gaps = 8/311 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF S+   YC   + D A   FD M + G  QD V+  +L+   C    +T R  E L  
Sbjct: 166 TFNSLILGYCRTQQLDVAQDLFDKMPLRGFSQDAVSYAALIEGFC----ETGRVDEALEL 221

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
            +++  PD  + A L++G       EE      +M E   W P    AY   +    R +
Sbjct: 222 FRELEQPDMYTHAALVKGLCDARRGEEGLYMLQKMKE-LGWRPA-TRAYAALVDLWCREQ 279

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           + +EA K L  M      P     +  ++   +    + AV++++ M   G    PN+  
Sbjct: 280 KAEEAEKMLNEMFDNGLVPCAVTCTAVVNAYCREGRMSGAVRVFESMKLKGCE--PNVWT 337

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           YNA++   CN   V       DQM   G  PD +TYN++      +  +    +    M 
Sbjct: 338 YNAMVQGFCNVGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIESAFRLLRLME 397

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
            N            I  L    + + A  +++ +   GI P   + N ++ GL   G+  
Sbjct: 398 GNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKGGKFD 457

Query: 449 DVRRFAEEMLN 459
               F E+M++
Sbjct: 458 VACTFLEKMVS 468



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 76/365 (20%), Positives = 147/365 (40%), Gaps = 35/365 (9%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
           G G     Y +N+++D L K G+ ++  +    ++  G+  +  TF ++ +  C  GK+D
Sbjct: 398 GNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKGGKFD 457

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAIL 223
            A    + M   G   D    +  +  +C+ +  +   L F++  ++K V P   ++ I+
Sbjct: 458 VACTFLEKMVSAGCAPDTYTYSPFIENLCKTKG-SREGLSFIDEMLQKDVKPSTVNYTIV 516

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           ++   KE N   A + +G+MV     +P+ V+ Y T +       ++ EA   +  MK  
Sbjct: 517 IDRLFKERNYGLATRIWGQMVS-LGCSPD-VVTYTTSVRAYCNEGRLHEAENVVMEMKKG 574

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN----LIMYNAVIGLLCNN 339
                   ++  +D    +  + HAV +   M G+    MPN     I+   ++      
Sbjct: 575 GIIVDAMAYNTLIDGHTSIGKTDHAVTILKHMTGVAS--MPNHFTFFILLRHLLQRRLAE 632

Query: 340 D------------DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
           D            ++ +VF  F+ M  +     +  Y  I E   + +R+ EV      M
Sbjct: 633 DVPLKTTSVWKTIELADVFELFELMKKNSVPSSARAYLAILEGFSEERRLDEVTSLVSHM 692

Query: 388 ------IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 441
                 +  +   + +NC   + M  D      A  +   ++ +G LP   S   LL G 
Sbjct: 693 KEDDLPLNEDIYTSLVNCFCKLRMYPD------AWALLCSMIGHGFLPNLISYQYLLSGF 746

Query: 442 RNLGR 446
              G+
Sbjct: 747 TAEGQ 751



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 78/195 (40%), Gaps = 6/195 (3%)

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346
           PT   ++  +  L +  D  HA +   +MV  G+   P+   +N++I   C    +D   
Sbjct: 127 PTGATYNALIRALCRRADLRHAQRYLSLMVRSGWR--PDAFTFNSLILGYCRTQQLDVAQ 184

Query: 347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406
             FD+M   G   D+++Y  + E   +  RV E  + F E+     QP     A  +  L
Sbjct: 185 DLFDKMPLRGFSQDAVSYAALIEGFCETGRVDEALELFREL----EQPDMYTHAALVKGL 240

Query: 407 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYE 466
            DA   E  + +   + E G  P   +   L+       +  +  +   EM +  ++   
Sbjct: 241 CDARRGEEGLYMLQKMKELGWRPATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPCA 300

Query: 467 VTMHKLKKAFYNESR 481
           VT   +  A+  E R
Sbjct: 301 VTCTAVVNAYCREGR 315


>gi|449460383|ref|XP_004147925.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
 gi|449516585|ref|XP_004165327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
          Length = 701

 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 90/385 (23%), Positives = 178/385 (46%), Gaps = 8/385 (2%)

Query: 111 LSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVM 168
           LSP    +N M+  L + G+  + +    VM ++   ++ ++  +        K ++A+ 
Sbjct: 321 LSPDVRTYNAMLSGLFRTGKLNKCFELWNVMSKNNCCNIVSYNMLIQGLLDNKKVEQAIC 380

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGW 227
            + ++   G++ D      L++ +C+     ++AL  L   + +  D D  +++ ++ G 
Sbjct: 381 YWQLLHERGLKADSTTYGLLINGLCKN-GYLNKALRILEEAENEGADLDTFAYSSMVHGL 439

Query: 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
            K+G +E+A +   +M +       HV  + + +   +R  +++EA+  LR MK ++C P
Sbjct: 440 CKKGMLEQAVELIHQMKKNRRKLNSHV--FNSLINGYVRAFKLEEAISVLREMKSKDCAP 497

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFR 347
           T+  ++  ++ L K    + A      M+  G  L P++I Y+ +I  LC  + VD    
Sbjct: 498 TVVSYNTIINGLCKAERFSDAYLSLKEMLEEG--LKPDMITYSLLIDGLCRGEKVDMALN 555

Query: 348 FFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 407
            + Q +     PD   +N+I   L   ++V    + F +M +    P  +   T +  L 
Sbjct: 556 LWHQCINKRLKPDLQMHNIIIHGLCTAQKVDVALEIFTQMRQVNCVPDLVTHNTIMEGLY 615

Query: 408 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEV 467
            A +   A++IW+ ILE G+ P   S N    GL +  R+SD   F  + L+R IL    
Sbjct: 616 KAGDCVEALKIWDRILEAGLQPDIISYNITFKGLCSCARVSDAIEFLYDALDRGILPNAP 675

Query: 468 TMHKLKKAFYNESRSMRDIFDSLER 492
           T + L +A  ++   M    ++  R
Sbjct: 676 TWNVLVRAVVDDKPLMEYALNTESR 700



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 131/273 (47%), Gaps = 5/273 (1%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEA 166
           G  L  +A++ MV  L K G  EQ    +  MK++   L+   F S+ + Y  A K +EA
Sbjct: 424 GADLDTFAYSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAFKLEEA 483

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
           +     M        VV+ N++++ +C+ E  +   L     +++ + PD  ++++L++G
Sbjct: 484 ISVLREMKSKDCAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEGLKPDMITYSLLIDG 543

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
             +   V+ A   + + + +    P+ +  +   +  L   ++VD AL+    M+  NC 
Sbjct: 544 LCRGEKVDMALNLWHQCINK-RLKPD-LQMHNIIIHGLCTAQKVDVALEIFTQMRQVNCV 601

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346
           P L   +  ++ L K  D   A+++WD ++  G  L P++I YN     LC+   V +  
Sbjct: 602 PDLVTHNTIMEGLYKAGDCVEALKIWDRILEAG--LQPDIISYNITFKGLCSCARVSDAI 659

Query: 347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
            F    +  G  P++ T+N++   ++ +K + E
Sbjct: 660 EFLYDALDRGILPNAPTWNVLVRAVVDDKPLME 692



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 126/280 (45%), Gaps = 42/280 (15%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCG 159
           +F+ AG    L  Y  N+++ +  K  +FE+    +  M E+G+   + ++ ++ ++   
Sbjct: 139 YFQTAGMSPNLQTY--NILIKISCKKRQFEKGKGLLTWMFENGLNPDILSYGTLINALAK 196

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
           +G   +AV  FD MS+ GV  DV+  N                                 
Sbjct: 197 SGNLLDAVELFDEMSVRGVNPDVMCYN--------------------------------- 223

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
             IL++G+ ++G+  +AN+ +  ++      P  V  Y   +  L +  ++DE+++    
Sbjct: 224 --ILIDGFLRKGDFVKANEIWKRLLTESSVYPS-VETYNIMINGLCKLGKLDESMEMWNR 280

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
           MK     P L  FS+ +  L K  +   A +++  M+  G  L P++  YNA++  L   
Sbjct: 281 MKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESG--LSPDVRTYNAMLSGLFRT 338

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
             ++  F  ++ M  +    + ++YNM+ + L+ NK+V +
Sbjct: 339 GKLNKCFELWNVMSKNNCC-NIVSYNMLIQGLLDNKKVEQ 377



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 78/369 (21%), Positives = 162/369 (43%), Gaps = 11/369 (2%)

Query: 78  IPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNA 135
           + +P LV ++L+ +  +P++A+  F  A +  G    P+ ++ ++  L        +   
Sbjct: 7   VISPTLVLKLLK-AEKNPNAALAIFDSACQHPGYAHPPFVFHHILRRLMDPKLVVHVGRI 65

Query: 136 VRVMK-EDGVLSLPTFASIFDSYCGAGKYDEAVMSF-DVMSMHGVEQDVVAVNSLLSAIC 193
           V +M+ +    S     S   +Y      D+A+  F +++ + G    + + NS+L+A  
Sbjct: 66  VDLMRAQRCTCSEDVALSAIKAYAKCSMPDQALNLFQNMVDIFGCNPGIRSFNSMLNAFI 125

Query: 194 RQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
            + NQ   A  F    +   + P+  ++ IL++   K+   E+       M E    NP+
Sbjct: 126 -ESNQWREAELFFTYFQTAGMSPNLQTYNILIKISCKKRQFEKGKGLLTWMFEN-GLNPD 183

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
            +L+Y T +  L +   + +A++    M      P +  ++  +D  ++  D   A ++W
Sbjct: 184 -ILSYGTLINALAKSGNLLDAVELFDEMSVRGVNPDVMCYNILIDGFLRKGDFVKANEIW 242

Query: 313 DIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 372
             ++    ++ P++  YN +I  LC    +D     +++M  +   PD  T++ +   L 
Sbjct: 243 KRLLTES-SVYPSVETYNIMINGLCKLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLS 301

Query: 373 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 432
           K    +  EK F EMI++   P        ++ L    +     E+WN + +N    +  
Sbjct: 302 KAGNFNAAEKVFQEMIESGLSPDVRTYNAMLSGLFRTGKLNKCFELWNVMSKNNCCNI-V 360

Query: 433 SANELLVGL 441
           S N L+ GL
Sbjct: 361 SYNMLIQGL 369



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/236 (19%), Positives = 100/236 (42%), Gaps = 4/236 (1%)

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           ++ + K    ++A   F  MV+ F  NP  + ++ + L   I   Q  EA  F    +  
Sbjct: 85  IKAYAKCSMPDQALNLFQNMVDIFGCNP-GIRSFNSMLNAFIESNQWREAELFFTYFQTA 143

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
              P L+ ++  + I  K         L   M   G N  P+++ Y  +I  L  + ++ 
Sbjct: 144 GMSPNLQTYNILIKISCKKRQFEKGKGLLTWMFENGLN--PDILSYGTLINALAKSGNLL 201

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI-KNEWQPTPLNCATA 402
           +    FD+M   G  PD + YN++ +  ++     +  + +  ++ ++   P+       
Sbjct: 202 DAVELFDEMSVRGVNPDVMCYNILIDGFLRKGDFVKANEIWKRLLTESSVYPSVETYNIM 261

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
           I  L    + + ++E+WN + +N   P   + + ++ GL   G  +   +  +EM+
Sbjct: 262 INGLCKLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKVFQEMI 317



 Score = 38.9 bits (89), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 57/263 (21%), Positives = 101/263 (38%), Gaps = 49/263 (18%)

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
           +   L  L+  K V    + + +M+ + C  +     +A+    K +    A+ L+  MV
Sbjct: 46  FHHILRRLMDPKLVVHVGRIVDLMRAQRCTCSEDVALSAIKAYAKCSMPDQALNLFQNMV 105

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
            I F   P +  +N+++     ++       FF      G  P+  TYN++ +   K ++
Sbjct: 106 DI-FGCNPGIRSFNSMLNAFIESNQWREAELFFTYFQTAGMSPNLQTYNILIKISCKKRQ 164

Query: 377 VHEVEKFFHEMIKNEWQPTPLNCATAITM------LLDADE-----------PEI----- 414
             + +     M +N   P  L+  T I        LLDA E           P++     
Sbjct: 165 FEKGKGLLTWMFENGLNPDILSYGTLINALAKSGNLLDAVELFDEMSVRGVNPDVMCYNI 224

Query: 415 -------------AIEIWNYIL-ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
                        A EIW  +L E+ + P   + N ++ GL  LG+L +    + EM NR
Sbjct: 225 LIDGFLRKGDFVKANEIWKRLLTESSVYPSVETYNIMINGLCKLGKLDE----SMEMWNR 280

Query: 461 R--------ILIYEVTMHKLKKA 475
                    +  +   +H L KA
Sbjct: 281 MKKNEKSPDLFTFSSMIHGLSKA 303


>gi|238478688|ref|NP_174320.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332193082|gb|AEE31203.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 806

 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 101/424 (23%), Positives = 171/424 (40%), Gaps = 45/424 (10%)

Query: 81  PDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWNAVRV 138
           P  V  VL+ S D    A+ FF WA R  R    P  +  M++VL K    +     + +
Sbjct: 174 PSQVCAVLR-SQDDERVALKFFYWADRQWRYRHDPMVYYSMLEVLSKTKLCQGSRRVLVL 232

Query: 139 MKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           MK  G+   P  F+ +  SY  AG+  +A+    +M   GVE +++  N+ +    R  N
Sbjct: 233 MKRRGIYRTPEAFSRVMVSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRA-N 291

Query: 198 QTSRALEFLNRVK------------------------------------KIVDPDGDSFA 221
           +  +AL FL R++                                    K   PD  S+ 
Sbjct: 292 RLEKALRFLERMQVVGIVPNVVTYNCMIRGYCDLHRVEEAIELLEDMHSKGCLPDKVSYY 351

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            ++    KE  + E      +M +     P+ V  Y T +  L +    DEAL FL+  +
Sbjct: 352 TIMGYLCKEKRIVEVRDLMKKMAKEHGLVPDQV-TYNTLIHMLTKHDHADEALWFLKDAQ 410

Query: 282 GENCFPTLKF-FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
            E  F   K  +S  +  L K    + A  L + M+  G +  P+++ Y AV+   C   
Sbjct: 411 -EKGFRIDKLGYSAIVHALCKEGRMSEAKDLINEMLSKG-HCPPDVVTYTAVVNGFCRLG 468

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
           +VD   +    M  HG  P++++Y  +   + +  +  E  +  +   ++ W P  +  +
Sbjct: 469 EVDKAKKLLQVMHTHGHKPNTVSYTALLNGMCRTGKSLEAREMMNMSEEHWWSPNSITYS 528

Query: 401 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
             +  L    +   A ++   ++  G  P     N LL  L   GR  + R+F EE LN+
Sbjct: 529 VIMHGLRREGKLSEACDVVREMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNK 588

Query: 461 RILI 464
              I
Sbjct: 589 GCAI 592



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 96/473 (20%), Positives = 187/473 (39%), Gaps = 63/473 (13%)

Query: 76  GIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQR--LSP--YAWNLMVDVLGKNGRFEQ 131
           GI  TP+    V+ +SY       D  +     QR  + P     N  +DV  +  R E+
Sbjct: 237 GIYRTPEAFSRVM-VSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRLEK 295

Query: 132 MWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS 190
               +  M+  G++ ++ T+  +   YC   + +EA+   + M   G   D V+  +++ 
Sbjct: 296 ALRFLERMQVVGIVPNVVTYNCMIRGYCDLHRVEEAIELLEDMHSKGCLPDKVSYYTIMG 355

Query: 191 AICRQE-----------------------------------NQTSRALEFLNRVK-KIVD 214
            +C+++                                   +    AL FL   + K   
Sbjct: 356 YLCKEKRIVEVRDLMKKMAKEHGLVPDQVTYNTLIHMLTKHDHADEALWFLKDAQEKGFR 415

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
            D   ++ ++    KEG + EA     EM+ +    P+ V+ Y   +    R  +VD+A 
Sbjct: 416 IDKLGYSAIVHALCKEGRMSEAKDLINEMLSKGHCPPD-VVTYTAVVNGFCRLGEVDKAK 474

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
           K L+VM      P    ++  L+ + +   S  A ++ ++     ++  PN I Y+ ++ 
Sbjct: 475 KLLQVMHTHGHKPNTVSYTALLNGMCRTGKSLEAREMMNMSEEHWWS--PNSITYSVIMH 532

Query: 335 LLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
            L     +        +MV  G FP  +  N++ + L ++ R HE  KF  E +      
Sbjct: 533 GLRREGKLSEACDVVREMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAI 592

Query: 395 TPLNCATAITMLLDADEPEIAIEIWN--YILENGILPLEASANELLVGLRNLGRLSDVRR 452
             +N  T I      DE + A+ + +  Y++         +   L+  L   GR+++   
Sbjct: 593 NVVNFTTVIHGFCQNDELDAALSVLDDMYLINKHADVF--TYTTLVDTLGKKGRIAEATE 650

Query: 453 FAEEMLNRRI----LIYEVTMHKLKKAFYNESRSMRDIFDSLER-----RCKT 496
             ++ML++ I    + Y   +H+     Y +   + D+   LE+     +C+T
Sbjct: 651 LMKKMLHKGIDPTPVTYRTVIHR-----YCQMGKVDDLVAILEKMISRQKCRT 698



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 72/166 (43%), Gaps = 7/166 (4%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDV 172
           + +  +VD LGK GR  +    ++ M   G+   P T+ ++   YC  GK D+ V   + 
Sbjct: 630 FTYTTLVDTLGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMGKVDDLVAILE- 688

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD-PDGDSFAILLEGWEKEG 231
             M   ++     N ++  +C    +   A   L +V +     D  +   L+EG+ K+G
Sbjct: 689 -KMISRQKCRTIYNQVIEKLCVL-GKLEEADTLLGKVLRTASRSDAKTCYALMEGYLKKG 746

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
               A K    M  R    P+  +  +     +++GK VDEA K +
Sbjct: 747 VPLSAYKVACRMFNR-NLIPDVKMCEKLSKRLVLKGK-VDEADKLM 790


>gi|297736854|emb|CBI26055.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 79/358 (22%), Positives = 154/358 (43%), Gaps = 4/358 (1%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK 162
           R   +G   S  A+N ++  LGK  R E+       MK D V ++PT+  + D  C  GK
Sbjct: 115 RQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDAVPNVPTYNILIDMLCREGK 174

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
            + A+   D M   G+  +V+ VN ++  +C+ +        F     K+  P+  +F+ 
Sbjct: 175 LNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSS 234

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L++G  K G V++A   + +M++    +    + Y + + +  +  + ++  K  + M  
Sbjct: 235 LIDGLGKCGRVDDAYSLYEKMLDC--GHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVH 292

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
             C P L   +  +D + K  ++     L+  +   GF  +P+   Y+ +I  L      
Sbjct: 293 TGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGF--IPDARSYSILIHGLVKAGLA 350

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
           +  +  F  M   G   D+  YN + +   K+ +V++  +   EM      PT +   + 
Sbjct: 351 NETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSV 410

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           I  L   D  + A  ++     NGI       + L+ G   +GR+ +     EE++ +
Sbjct: 411 IDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQK 468



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 82/373 (21%), Positives = 154/373 (41%), Gaps = 38/373 (10%)

Query: 119 MVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           ++D LGK GR +  ++    M + G V     + S+  S+   G+ ++    +  M   G
Sbjct: 235 LIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTG 294

Query: 178 VEQDVVAVNSLLSAICRQ-ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA 236
              D+  +N+ +  + +  E +  RAL F         PD  S++IL+ G  K G   E 
Sbjct: 295 CSPDLTLINTYMDCVFKAGETEKGRAL-FREINAHGFIPDARSYSILIHGLVKAGLANET 353

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
            + F  M E+      H  AY   +    +  +V++A + L  MK +   PT+  + + +
Sbjct: 354 YELFYAMKEQGCVLDTH--AYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVI 411

Query: 297 DILVKLNDSTHAVQLWD----------------IMVGIGF-----------------NLM 323
           D L K++    A  L++                ++ G G                   L 
Sbjct: 412 DGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLT 471

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           PN+  +N ++  L   ++++     F  M      P+ +TY+++   L + ++ ++   F
Sbjct: 472 PNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVF 531

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
           + EM K   +P  +   T I+ L  A     A  +++    NG +P  AS N ++ GL +
Sbjct: 532 WQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGLSS 591

Query: 444 LGRLSDVRRFAEE 456
             +  D     EE
Sbjct: 592 ANKAMDAYALFEE 604



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/309 (22%), Positives = 134/309 (43%), Gaps = 5/309 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
            + ++   Y  AGK+DEA    +     G    V+A N +L+ + ++  +   AL     
Sbjct: 92  AYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKR-RVEEALRIFEE 150

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           +K+   P+  ++ IL++   +EG +  A +   +M ER    P +VL     +  L + +
Sbjct: 151 MKRDAVPNVPTYNILIDMLCREGKLNAALEIRDDM-ERAGLFP-NVLTVNIMIDRLCKAQ 208

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           +++EA      M  + C P    FS+ +D L K      A  L++ M+  G   +P  I+
Sbjct: 209 KLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGH--VPGAIV 266

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           Y ++I         ++  + + +MV  G  PD    N   +C+ K     +    F E+ 
Sbjct: 267 YTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREIN 326

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
            + + P   + +  I  L+ A       E++  + E G +    + N ++ G    G+++
Sbjct: 327 AHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVN 386

Query: 449 DVRRFAEEM 457
              +  EEM
Sbjct: 387 KAYQLLEEM 395



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/316 (22%), Positives = 132/316 (41%), Gaps = 45/316 (14%)

Query: 76  GIIPTPD----LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQ 131
           G IP       L+H +++    + +  + F+    +G  L  +A+N ++D   K+G+  +
Sbjct: 329 GFIPDARSYSILIHGLVKAGLANETYEL-FYAMKEQGCVLDTHAYNAVIDGFCKSGKVNK 387

Query: 132 MWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS 190
            +  +  MK  G   ++ T+ S+ D      + DEA M F+    +G++ +VV  +S   
Sbjct: 388 AYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSS--- 444

Query: 191 AICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
                                           L++G+ K G ++EA     E++++    
Sbjct: 445 --------------------------------LIDGFGKVGRIDEAYLIMEELMQK-GLT 471

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P +V  +   L  L++ ++++EAL   + MK   C P    +S  ++ L ++     A  
Sbjct: 472 P-NVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFV 530

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
            W  M  +G  L PN I Y  +I  L    ++      F +   +G  PDS +YN + E 
Sbjct: 531 FWQEMQKLG--LKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIEG 588

Query: 371 LIKNKRVHEVEKFFHE 386
           L    +  +    F E
Sbjct: 589 LSSANKAMDAYALFEE 604



 Score = 45.8 bits (107), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 3/132 (2%)

Query: 298 ILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGA 357
           +L K N    AV+L++ +       +P    YN +I    +    D  +   ++    G+
Sbjct: 64  VLCKANRLDEAVELFEQLEQ--NRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGS 121

Query: 358 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 417
            P  + YN I  CL K +RV E  + F EM K +  P        I ML    +   A+E
Sbjct: 122 IPSVIAYNCILTCLGKKRRVEEALRIFEEM-KRDAVPNVPTYNILIDMLCREGKLNAALE 180

Query: 418 IWNYILENGILP 429
           I + +   G+ P
Sbjct: 181 IRDDMERAGLFP 192


>gi|125524449|gb|EAY72563.1| hypothetical protein OsI_00429 [Oryza sativa Indica Group]
          Length = 535

 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 94/407 (23%), Positives = 182/407 (44%), Gaps = 29/407 (7%)

Query: 82  DLVHEVLQLSYDSPSSAVDFFRWAG------RGQRLSPYAWNLMVDVLGKNGR---FEQM 132
           D+V +VLQ    +   A+ FF+WA        G R    A+  M+D+LG+  +     Q+
Sbjct: 113 DVVLKVLQKQRSNWKVALSFFKWAAGLPQYNHGSR----AYTEMLDILGRMKKVRLMRQL 168

Query: 133 WNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI 192
           ++ + +     V++   FA + + Y GA K  EA+  F     +G E D+V    LL ++
Sbjct: 169 FDEIPMESRQSVITNRMFAVLLNRYAGAHKVQEAIDMFYKRKDYGFELDLVGFQILLMSL 228

Query: 193 CRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
           CR ++       FL + K    P   S+ I+L GW  +G++ +A + + E++   +  P+
Sbjct: 229 CRYKHVEEAEALFLQK-KDEFPPVIKSWNIILNGWCVKGSLADAKRVWNEIIAS-KLKPD 286

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
            +  Y TF+ +L +  ++  A+K    M  +   P +   +  +D L        A++++
Sbjct: 287 -LFTYGTFINSLTKSGKLSTAVKLFTSMWEKGINPDVAICNCIIDQLCFKKRIPEALEIF 345

Query: 313 DIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 372
             M   G     ++  YN +I   C  + ++ V+   D M   G  P+++TY+ I +   
Sbjct: 346 GEMNDRG--CQADVATYNTLIKHFCKINRMEKVYELLDDMEVKGVSPNNMTYSYILKTTE 403

Query: 373 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 432
           K K   +V      M K+  +         + + +  D  +    +W+ +  NG  P + 
Sbjct: 404 KPK---DVISLMQRMEKSGCRLDSDTYNLILNLYVSWDYEKGVQLVWDEMERNGSGPDQR 460

Query: 433 SANELLVGLRNLGRLSDVRRFAEEMLNR--------RILIYEVTMHK 471
           S   ++ GL + G+L +   +   M +R        ++L+  + M K
Sbjct: 461 SFTIMVHGLHSHGKLDEALHYYRTMESRGMTPEPRTKLLVKAIRMKK 507


>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63080, mitochondrial; Flags: Precursor
 gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
 gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 614

 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 167/365 (45%), Gaps = 8/365 (2%)

Query: 83  LVHEVLQLSYDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE 141
           LVH + Q  ++  S AV    R   +G +     +  +++ L K G  +   N +  M++
Sbjct: 176 LVHGLFQ--HNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEK 233

Query: 142 DGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS 200
             +   +  ++++ DS C     D+A+  F  M   G+  DV   +SL+S +C     + 
Sbjct: 234 GKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSD 293

Query: 201 RALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF 260
            +    + +++ ++P+  +F  L++ + KEG + EA K F EM++R   +P +++ Y + 
Sbjct: 294 ASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQR-SIDP-NIVTYNSL 351

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF 320
           +       ++DEA +   +M  ++C P +  ++  ++   K       ++L+  M   G 
Sbjct: 352 INGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRG- 410

Query: 321 NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEV 380
            L+ N + Y  +I       D DN    F QMV  G  P+ +TYN + + L KN ++ + 
Sbjct: 411 -LVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKA 469

Query: 381 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 440
              F  + K++ +P           +  A + E   +++  +   G+ P   + N ++ G
Sbjct: 470 MVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISG 529

Query: 441 LRNLG 445
               G
Sbjct: 530 FCKKG 534



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 86/371 (23%), Positives = 157/371 (42%), Gaps = 42/371 (11%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N+M++ L +  +       + ++MK     S+ T  S+ + +C   +  EAV   D 
Sbjct: 101 YTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQ 160

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEG 231
           M   G + D V   +L+  +  Q N+ S A+  + R V K   PD  ++  ++ G  K G
Sbjct: 161 MVEMGYQPDTVTFTTLVHGL-FQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRG 219

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-------- 283
             + A     +M E+ +   + V+ Y T + +L + + VD+AL     M  +        
Sbjct: 220 EPDLALNLLNKM-EKGKIEAD-VVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFT 277

Query: 284 -----NCF----------------------PTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
                +C                       P +  F++ +D   K      A +L+D M+
Sbjct: 278 YSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMI 337

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
               +  PN++ YN++I   C +D +D   + F  MV     PD +TYN +     K K+
Sbjct: 338 QRSID--PNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKK 395

Query: 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 436
           V +  + F +M +       +   T I     A + + A  ++  ++ +G+ P   + N 
Sbjct: 396 VVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNT 455

Query: 437 LLVGLRNLGRL 447
           LL GL   G+L
Sbjct: 456 LLDGLCKNGKL 466



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 77/351 (21%), Positives = 155/351 (44%), Gaps = 8/351 (2%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  F+ +  +     K+D  +   + M + GV  ++   N +++ +CR+ +Q S AL  
Sbjct: 64  SIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRR-SQLSFALAI 122

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L ++ K+   P   +   LL G+     + EA     +MVE   + P+ V  + T +  L
Sbjct: 123 LGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVE-MGYQPDTV-TFTTLVHGL 180

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
            +  +  EA+  +  M  + C P L  +   ++ L K  +   A+ L + M      +  
Sbjct: 181 FQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKME--KGKIEA 238

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           ++++Y+ VI  LC    VD+    F +M   G  PD  TY+ +  CL    R  +  +  
Sbjct: 239 DVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLL 298

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
            +M++ +  P  +   + I       +   A ++++ +++  I P   + N L+ G    
Sbjct: 299 SDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMH 358

Query: 445 GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSM--RDIFDSLERR 493
            RL + ++    M+++  L   VT + L   F    + +   ++F  + RR
Sbjct: 359 DRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRR 409



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/307 (20%), Positives = 128/307 (41%), Gaps = 23/307 (7%)

Query: 96  SSAVDFFRWAGRGQRLSPY----------AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV- 144
           S   ++ RW+   + LS             +N ++D   K G+  +       M +  + 
Sbjct: 283 SCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSID 342

Query: 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204
            ++ T+ S+ + +C   + DEA   F +M       DVV  N+L++  C+ +        
Sbjct: 343 PNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMEL 402

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           F +  ++ +  +  ++  L+ G+ +  + + A   F +MV   +    +++ Y T L  L
Sbjct: 403 FRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVS--DGVHPNIMTYNTLLDGL 460

Query: 265 IRGKQVDEAL---KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF- 320
            +  ++++A+   ++L+  K E    T    S  +    K+ D       WD+   +   
Sbjct: 461 CKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDG------WDLFCSLSLK 514

Query: 321 NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEV 380
            + P++I YN +I   C     +  +  F +M   G  PDS TYN +    +++      
Sbjct: 515 GVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAAS 574

Query: 381 EKFFHEM 387
            +   EM
Sbjct: 575 AELIKEM 581


>gi|224109690|ref|XP_002315278.1| predicted protein [Populus trichocarpa]
 gi|222864318|gb|EEF01449.1| predicted protein [Populus trichocarpa]
          Length = 728

 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 83/356 (23%), Positives = 153/356 (42%), Gaps = 40/356 (11%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
           GRG + +   +N+MV    K G+ +++   VR M+E G L  + T+ ++   +C  GK D
Sbjct: 365 GRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMD 424

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
           EA    D M   G++ D V +N++L A+CR                              
Sbjct: 425 EAFRLMDEMGRKGLKMDDVTLNTMLRALCR------------------------------ 454

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
                E  ++EA+        R  +  E  ++Y T +I   + ++  +AL+    MK + 
Sbjct: 455 -----ERKLDEAHDLLCSARRRGYFVDE--VSYGTLIIGYFKHEKASQALRLWDEMKEKE 507

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
             P++  +++ +  L ++  +  A+   D ++  G  L+P+ I YN +I   C    V+ 
Sbjct: 508 IIPSIITYNSMIAGLCQMGKTNQAIDKLDELLESG--LVPDEITYNTIIHGYCQEGQVEK 565

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
            F+F ++MV     PD +T N +   L K   + +  K F+  I        ++  T I 
Sbjct: 566 AFQFHNKMVEKNFKPDVVTCNTLLCGLCKEGMLEKALKLFNTWISKGKDVDAVSYNTIIL 625

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
            L        A ++   + E  + P   + N +L GL + GR+ D   F  ++  +
Sbjct: 626 SLCKEKRFGEAFDLLEEMEEKKLGPDCYTYNAILGGLTDAGRMKDAEEFISKIAEK 681



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 100/482 (20%), Positives = 198/482 (41%), Gaps = 31/482 (6%)

Query: 17  IPSSSSTTTSPTSHNPHRPTRPRFPTHLDAPY--ISSSARIICEILAHASSDDIESALAC 74
           IP   S++      +P +   P    H+  P   IS  A + C     A+   I + +  
Sbjct: 95  IPVDKSSSLHYLLLHPQKTNNPVSCLHISKPLLDISIGAYVACGRPHQAAQ--IFNRMKR 152

Query: 75  TGIIPTPDLVHEVLQLSYDSPSSA---------VDFFRWAGRGQRLSPYAWNLMVDVLGK 125
            G+ PT    + +L      PSS           DF +    G +++  ++N+++     
Sbjct: 153 LGMQPTLLTCNTLLNALVRFPSSHSIRLSKAVFTDFIKI---GVKINTNSFNILIHGSCM 209

Query: 126 NGRFEQMWNAVRVMKEDGVLSLP----TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD 181
             RF +   A+RV+ +      P    T+ +I D  C  G+ +EA      M   G+  +
Sbjct: 210 ENRFGE---AIRVLGKMRDYGCPPDNITYNTILDGLCKKGRLNEARDLLLDMKNKGLFPN 266

Query: 182 VVAVNSLLSAICRQE--NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKT 239
               N L+   CR     + +  +E ++  +  V PD  ++ +++ G+ K+G + EA + 
Sbjct: 267 RTTFNILVVGCCRLGWLKEAANVIELMS--QNSVVPDAWTYNVMISGFCKQGRIAEAMRL 324

Query: 240 FGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299
             EM E  + +P+ V+ Y T +         +E  K +  M+G    P    ++  +   
Sbjct: 325 REEM-ENLKLSPD-VVTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMVKWF 382

Query: 300 VKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFP 359
           VK        +    M   G   +P+++ YN +I   C    +D  FR  D+M   G   
Sbjct: 383 VKKGKMDEVDKTVRKMEESG--CLPDIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGLKM 440

Query: 360 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 419
           D +T N +   L + +++ E         +  +    ++  T I      ++   A+ +W
Sbjct: 441 DDVTLNTMLRALCRERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFKHEKASQALRLW 500

Query: 420 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 479
           + + E  I+P   + N ++ GL  +G+ +      +E+L   ++  E+T + +   +  E
Sbjct: 501 DEMKEKEIIPSIITYNSMIAGLCQMGKTNQAIDKLDELLESGLVPDEITYNTIIHGYCQE 560

Query: 480 SR 481
            +
Sbjct: 561 GQ 562



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 77/383 (20%), Positives = 165/383 (43%), Gaps = 38/383 (9%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVM 173
            +N++V    + G  ++  N + +M ++ V+    T+  +   +C  G+  EA+   + M
Sbjct: 269 TFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMISGFCKQGRIAEAMRLREEM 328

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
               +  DVV  N+L++  C +   +    + +  ++ + + P+  ++ ++++ + K+G 
Sbjct: 329 ENLKLSPDVVTYNTLING-CFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMVKWFVKKGK 387

Query: 233 VEEANKTF-------------------------GEMVERFEWNPEHV--------LAYET 259
           ++E +KT                          G+M E F    E          +   T
Sbjct: 388 MDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGLKMDDVTLNT 447

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG 319
            L  L R +++DEA   L   +    F     +   +    K   ++ A++LWD M    
Sbjct: 448 MLRALCRERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFKHEKASQALRLWDEMKEK- 506

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
             ++P++I YN++I  LC     +      D+++  G  PD +TYN I     +  +V +
Sbjct: 507 -EIIPSIITYNSMIAGLCQMGKTNQAIDKLDELLESGLVPDEITYNTIIHGYCQEGQVEK 565

Query: 380 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 439
             +F ++M++  ++P  + C T +  L      E A++++N  +  G      S N +++
Sbjct: 566 AFQFHNKMVEKNFKPDVVTCNTLLCGLCKEGMLEKALKLFNTWISKGKDVDAVSYNTIIL 625

Query: 440 GLRNLGRLSDVRRFAEEMLNRRI 462
            L    R  +     EEM  +++
Sbjct: 626 SLCKEKRFGEAFDLLEEMEEKKL 648



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 84/387 (21%), Positives = 155/387 (40%), Gaps = 75/387 (19%)

Query: 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204
           +S P       +Y   G+  +A   F+ M   G++  ++  N+LL+A+ R  +  S  L 
Sbjct: 122 ISKPLLDISIGAYVACGRPHQAAQIFNRMKRLGMQPTLLTCNTLLNALVRFPSSHSIRLS 181

Query: 205 ---FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFL 261
              F + +K  V  + +SF IL+ G   E    EA +  G+M  R    P   + Y T L
Sbjct: 182 KAVFTDFIKIGVKINTNSFNILIHGSCMENRFGEAIRVLGKM--RDYGCPPDNITYNTIL 239

Query: 262 ITLIRGKQVDEALKFLRVMKGENCFPT-------------LKFFSNALDILVKLNDSTHA 308
             L +  +++EA   L  MK +  FP              L +   A +++  ++ ++  
Sbjct: 240 DGLCKKGRLNEARDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVV 299

Query: 309 VQLWDIMVGI-GF-------------------NLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
              W   V I GF                    L P+++ YN +I     +   +  F+ 
Sbjct: 300 PDAWTYNVMISGFCKQGRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKL 359

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
            ++M   G  P+S+TYN++ +  +K  ++ EV+K   +M                     
Sbjct: 360 IEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKM--------------------- 398

Query: 409 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 468
                          E+G LP   + N L+     +G++ +  R  +EM  + + + +VT
Sbjct: 399 --------------EESGCLPDIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGLKMDDVT 444

Query: 469 MHKLKKAFYNESR--SMRDIFDSLERR 493
           ++ + +A   E +     D+  S  RR
Sbjct: 445 LNTMLRALCRERKLDEAHDLLCSARRR 471


>gi|356552005|ref|XP_003544362.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g09680-like [Glycine max]
          Length = 509

 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 157/346 (45%), Gaps = 15/346 (4%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F  +   +C  G    A + FD +   G+   VV+ N+L+S  C+     + A+E   R+
Sbjct: 145 FNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNTLISGCCK-----AGAVEEGFRL 199

Query: 210 KKIVD-----PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           K +++     PD  +F+ L+ G  KEG ++E +  F EM  +    P  V  +   +   
Sbjct: 200 KGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGK-GLVPNGV-TFTVLIDGQ 257

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
            +G +VD ALK  ++M  +   P L  ++  ++ L K+ D   A +L + M   G  L P
Sbjct: 258 CKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMSASG--LRP 315

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           + I +  +I   C   D+++      +MV  G   D + + ++   L ++ RVH+ E+  
Sbjct: 316 DRITFTTLIDGCCKYGDMESALEIKRRMVEEGIELDDVAFTVLISGLCRDGRVHDAERML 375

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
            +M+   ++P        +          +  ++   +  +G +P   + N L+ GL   
Sbjct: 376 RDMLSAGFKPDDPTYTMVVDCFCKKGNVXMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQ 435

Query: 445 GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMR-DIFDS 489
           G++ + +   + MLN  +   ++T + L +       S+  DIF+S
Sbjct: 436 GQVKNAKMLLDAMLNVGVAPNDITYNILLEGHSKHGSSVDVDIFNS 481



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 130/308 (42%), Gaps = 4/308 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           +F ++    C AG  +E      VM    V  DV   ++L++ +C++      +L F   
Sbjct: 179 SFNTLISGCCKAGAVEEGFRLKGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEM 238

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
             K + P+G +F +L++G  K G V+ A K F  M+ +    P+ ++ Y   +  L +  
Sbjct: 239 CGKGLVPNGVTFTVLIDGQCKGGKVDLALKNFQMMLAQ-GVRPD-LVTYNALINGLCKVG 296

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
            + EA + +  M      P    F+  +D   K  D   A+++   MV  G  L  + + 
Sbjct: 297 DLKEARRLVNEMSASGLRPDRITFTTLIDGCCKYGDMESALEIKRRMVEEGIEL--DDVA 354

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           +  +I  LC +  V +  R    M+  G  PD  TY M+ +C  K   V    K   EM 
Sbjct: 355 FTVLISGLCRDGRVHDAERMLRDMLSAGFKPDDPTYTMVVDCFCKKGNVXMGFKLLKEMQ 414

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
            +   P  +     +  L    + + A  + + +L  G+ P + + N LL G    G   
Sbjct: 415 SDGHVPGVVTYNALMNGLCKQGQVKNAKMLLDAMLNVGVAPNDITYNILLEGHSKHGSSV 474

Query: 449 DVRRFAEE 456
           DV  F  E
Sbjct: 475 DVDIFNSE 482



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAG 161
           R    G  L   A+ +++  L ++GR       +R M   G     PT+  + D +C  G
Sbjct: 342 RMVEEGIELDDVAFTVLISGLCRDGRVHDAERMLRDMLSAGFKPDDPTYTMVVDCFCKKG 401

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSF 220
                      M   G    VV  N+L++ +C+Q  Q   A   L+ +  + V P+  ++
Sbjct: 402 NVXMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQ-GQVKNAKMLLDAMLNVGVAPNDITY 460

Query: 221 AILLEGWEKEGN 232
            ILLEG  K G+
Sbjct: 461 NILLEGHSKHGS 472


>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
          Length = 629

 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 74/324 (22%), Positives = 151/324 (46%), Gaps = 5/324 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDE 165
           RG +     +  +V+ L K G  +   + ++ M++  +   +  + +I D  C     D+
Sbjct: 214 RGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDD 273

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A   F+ M   G+  DV   NSL+S +C     +  +    N +++ ++P+  +F+ L++
Sbjct: 274 AFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALID 333

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
            + KEG + EA K + EM++R   +P+ +  Y + +       ++DEA     +M  ++C
Sbjct: 334 AFVKEGKLVEAEKLYDEMIKR-SIDPD-IFTYSSLINGFCMHDRLDEAKHMFELMISKDC 391

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
           FP +  ++  +    K       ++L+  M   G  L+ N + YN +I  L    D D  
Sbjct: 392 FPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRG--LVGNTVTYNTLIQGLFQAGDCDMA 449

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
            + F +MV  G  PD +TY+++ + L K  ++ +    F  + K++ +P        I  
Sbjct: 450 QKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEG 509

Query: 406 LLDADEPEIAIEIWNYILENGILP 429
           +  A + E   +++  +   G+ P
Sbjct: 510 MCKAGKVEDGWDLFCSLSLKGVKP 533



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 83/371 (22%), Positives = 165/371 (44%), Gaps = 42/371 (11%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y++N++++   +  +       + ++MK      + T +S+ + YC + +  +AV   D 
Sbjct: 116 YSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQ 175

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEG 231
           M   G + D V  N+L+  +    N+ S A+  +++ V++   PD  ++  ++ G  K G
Sbjct: 176 MVEMGYKPDTVTFNTLIHGLFLH-NKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRG 234

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-------- 283
           +++ A     +M E+ +   + V+ Y T +  L + K +D+A      M+ +        
Sbjct: 235 DIDLALSLLKKM-EKGKIEAD-VVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFT 292

Query: 284 -----NCF----------------------PTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
                +C                       P +  FS  +D  VK      A +L+D M+
Sbjct: 293 YNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI 352

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
               +  P++  Y+++I   C +D +D     F+ M+    FP+ +TYN + +   K KR
Sbjct: 353 KRSID--PDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKR 410

Query: 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 436
           V E  + F EM +       +   T I  L  A + ++A +I+  ++ +G+ P   + + 
Sbjct: 411 VEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSI 470

Query: 437 LLVGLRNLGRL 447
           LL GL   G+L
Sbjct: 471 LLDGLCKYGKL 481



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 146/337 (43%), Gaps = 6/337 (1%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  F  +  +     K+D  +   + M    +  D+ + N L++  CR+ +Q   AL  
Sbjct: 79  SIVEFNKLLSAIAKMKKFDLVISLGERMQNLRISYDLYSYNILINCFCRR-SQLPLALAV 137

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L ++ K+  +PD  + + LL G+     + +A     +MVE   + P+ V  + T +  L
Sbjct: 138 LGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVE-MGYKPDTV-TFNTLIHGL 195

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
               +  EA+  +  M    C P L  +   ++ L K  D   A+ L   M      +  
Sbjct: 196 FLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEK--GKIEA 253

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           ++++YN +I  LC    +D+ F  F++M   G  PD  TYN +  CL    R  +  +  
Sbjct: 254 DVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLL 313

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
             MI+ +  P  +  +  I   +   +   A ++++ +++  I P   + + L+ G    
Sbjct: 314 SNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMH 373

Query: 445 GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
            RL + +   E M+++      VT + L K F    R
Sbjct: 374 DRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKR 410



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 155/365 (42%), Gaps = 20/365 (5%)

Query: 129 FEQMWNAVRVMKE-DGVLSLP-------------TFASIFDSYCGAGKYDEAVMSFDVMS 174
           F ++ +A+  MK+ D V+SL              ++  + + +C   +   A+     M 
Sbjct: 83  FNKLLSAIAKMKKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMM 142

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNV 233
             G E D+V ++SLL+  C  + + S A+  ++++ ++   PD  +F  L+ G       
Sbjct: 143 KLGYEPDIVTLSSLLNGYCHSK-RISDAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKA 201

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            EA     +MV+R    P+ V  Y   +  L +   +D AL  L+ M+       +  ++
Sbjct: 202 SEAVALVDQMVQR-GCQPDLV-TYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYN 259

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +D L K      A  L++ M   G    P++  YN++I  LCN     +  R    M+
Sbjct: 260 TIIDGLCKYKHIDDAFALFNKMETKGIR--PDVFTYNSLISCLCNYGRWSDASRLLSNMI 317

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
                P+ +T++ + +  +K  ++ E EK + EMIK    P     ++ I      D  +
Sbjct: 318 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 377

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 473
            A  ++  ++     P   + N L+ G     R+ +      EM  R ++   VT + L 
Sbjct: 378 EAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLI 437

Query: 474 KAFYN 478
           +  + 
Sbjct: 438 QGLFQ 442



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/343 (20%), Positives = 129/343 (37%), Gaps = 36/343 (10%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCG 159
           F +   +G R   + +N ++  L   GR+      +  M E  +  ++ TF+++ D++  
Sbjct: 278 FNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVK 337

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
            GK  EA   +D M    ++ D+   +SL++  C  +        F   + K   P+  +
Sbjct: 338 EGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVT 397

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           +  L++G+ K   VEE  + F EM +R      + + Y T +  L +    D A K  + 
Sbjct: 398 YNTLIKGFCKAKRVEEGMELFREMSQRGLVG--NTVTYNTLIQGLFQAGDCDMAQKIFKK 455

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQL---------------------------- 311
           M  +   P +  +S  LD L K      A+ +                            
Sbjct: 456 MVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGK 515

Query: 312 ----WDIMVGIGF-NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM 366
               WD+   +    + PN+I+Y  +I   C     +     F +M   G  PDS  YN 
Sbjct: 516 VEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNT 575

Query: 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 409
           +    +++       +   EM    +       +  I ML D 
Sbjct: 576 LIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVINMLHDG 618


>gi|116793367|gb|ABK26722.1| unknown [Picea sitchensis]
          Length = 198

 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 58/147 (39%), Positives = 84/147 (57%), Gaps = 2/147 (1%)

Query: 50  SSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQ 109
           + S + IC+IL  + + D+   L  + +  +P LV EVL    ++   A  FF WAG+ Q
Sbjct: 34  AKSLKKICKILTSSPTADVSEVLQKSKVEASPKLVEEVLMRFENAGMQAYRFFEWAGKQQ 93

Query: 110 RL--SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAV 167
               S  A+++++D LGK  ++  MW  V +MK  GVL+  TFA I   Y  A K +EAV
Sbjct: 94  DYAHSVEAYHIIIDSLGKIQQYGLMWTVVNLMKIKGVLTKETFAIIMRRYARAKKIEEAV 153

Query: 168 MSFDVMSMHGVEQDVVAVNSLLSAICR 194
            +FD M   GV  D+ A NSLLSA+C+
Sbjct: 154 YTFDTMEKFGVLPDLEAFNSLLSALCK 180


>gi|225464138|ref|XP_002265372.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46100
           [Vitis vinifera]
 gi|296087974|emb|CBI35257.3| unnamed protein product [Vitis vinifera]
          Length = 503

 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 90/380 (23%), Positives = 164/380 (43%), Gaps = 16/380 (4%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRV---MKE-DGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           ++ + +    GR  +  +AVRV   MKE +   S  ++ ++F    G  +   A+  +  
Sbjct: 86  DIFLSICRAYGRVHKPLDAVRVFRKMKEYECEPSQKSYITVFAILVGENQLKLALRFYRY 145

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEG 231
           M   G+   V ++N L+ A+C+       AL     +  +   PD  ++  L+ G  + G
Sbjct: 146 MREMGIPPSVASLNVLIKALCKNSGTMDAALRIFREMPNRGCPPDSYTYGTLINGLCRLG 205

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            + EA + F EM E    +P  V+ Y + +  L + K +D A++ L  M  +   P +  
Sbjct: 206 KIGEAKELFKEM-ETKACSPT-VVTYTSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFT 263

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           +S+ +D   K   S+ A++L D+MV      +PN+I Y+ ++  LC    +       D+
Sbjct: 264 YSSLMDGHCKSGCSSRALELLDMMVS--RRHLPNMITYSTLVHGLCKEGKLQEAVEILDR 321

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA------TAITM 405
           M   G  PD+  Y  I        + HE   F  EM+     P  L  +        +  
Sbjct: 322 MKLQGLRPDAGLYGKIISGFCDICKFHEAANFLDEMVLGGISPNRLTWSLHVRIHNIVVQ 381

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 465
            L  + P  A +++  +   GI     + + L+    N G L       +EM+    +  
Sbjct: 382 GLCTEHPNRAFQLYLSMRTRGISIDAKTFDSLVNYFCNKGDLHKAAHLVDEMVLDGCIPD 441

Query: 466 EVTMHKLKKAFYNESRSMRD 485
           EVT + +  AF++  R +R+
Sbjct: 442 EVTWNAVVCAFWDR-RKVRE 460



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 75/354 (21%), Positives = 140/354 (39%), Gaps = 43/354 (12%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEA 166
           G R S   ++LM+  L     F      +  MKE+   ++   F SI  +Y    K  +A
Sbjct: 45  GFRHSHQTFSLMISRLVSANHFRLAEELLCRMKEEKCNITEDIFLSICRAYGRVHKPLDA 104

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLE 225
           V  F  M  +  E    +  ++  AI   ENQ   AL F   ++++ + P   S  +L++
Sbjct: 105 VRVFRKMKEYECEPSQKSYITVF-AILVGENQLKLALRFYRYMREMGIPPSVASLNVLIK 163

Query: 226 GWEK-EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
              K  G ++ A + F EM  R    P     Y T +  L R  ++ EA +  + M+ + 
Sbjct: 164 ALCKNSGTMDAALRIFREMPNR--GCPPDSYTYGTLINGLCRLGKIGEAKELFKEMETKA 221

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
           C PT+                                     + Y ++I  LC + D+D+
Sbjct: 222 CSPTV-------------------------------------VTYTSLIHGLCQSKDLDS 244

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
             R  ++M   G  P+  TY+ + +   K+       +    M+     P  +  +T + 
Sbjct: 245 AIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYSTLVH 304

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
            L    + + A+EI + +   G+ P      +++ G  ++ +  +   F +EM+
Sbjct: 305 GLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISGFCDICKFHEAANFLDEMV 358


>gi|125562258|gb|EAZ07706.1| hypothetical protein OsI_29963 [Oryza sativa Indica Group]
          Length = 465

 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 95/374 (25%), Positives = 157/374 (41%), Gaps = 16/374 (4%)

Query: 81  PDLVHEVLQLSYDS-PSSAVDFFRWAGRGQRLSPYA--WNLMVDVLGKNGRFEQMWNAVR 137
           PDL   V++ +  + P  A  F  W       +  A  ++ ++  L +   F  +W+   
Sbjct: 83  PDLALRVIRAAAPAEPLHAARFLAWLRAKPSFAASADHFDALLLPLARARLFTHLWSLAA 142

Query: 138 VMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
            M+  G+ LS  TF+++  SY  +   D+AV  F+ +   G  Q     N+LL A+C   
Sbjct: 143 DMRALGLPLSPSTFSAVISSYGQSRLTDQAVEVFNRLPRFGCPQTTQVYNALLDALC-AN 201

Query: 197 NQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
              + A + L R+ +K V PD  +F+ L++ W   G + EA     +M ER    P  V 
Sbjct: 202 GSFAGAYKLLRRMARKGVAPDRATFSTLVDAWCAAGKLREAQAFLDDMAERGFHPP--VR 259

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
             +  +  L+R  +++EA  F   M  E   P +  F++  + L    D   AV L    
Sbjct: 260 GRDLLVDGLVRAGRLEEAKAFALRMTKEGVLPDVATFNSLAEALCSSGDVEFAVALLADA 319

Query: 316 VGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 375
              G  L P++  Y  +I  +     +D  FR F   +  G  P    Y  I + L K  
Sbjct: 320 SSRG--LCPDISTYKVMIPAVAKAGRIDEAFRLFYAALEDGHRPFPSLYAAIIKALCKAG 377

Query: 376 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL---ENGILPLEA 432
           R  +   FF +M      P        + M +        +E  NY++   E G  P   
Sbjct: 378 RFADAFAFFGDMKSKGHPPNRPVYVMLVKMCVRGGR---FVEAANYLVEMSEAGFAPRAP 434

Query: 433 SANELLVGLRNLGR 446
           + N ++ GLR+ G+
Sbjct: 435 TFNSVVDGLRHCGK 448



 Score = 43.5 bits (101), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 63/171 (36%), Gaps = 2/171 (1%)

Query: 306 THAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYN 365
           TH   L   M  +G  L P+   ++AVI     +   D     F+++   G    +  YN
Sbjct: 135 THLWSLAADMRALGLPLSPS--TFSAVISSYGQSRLTDQAVEVFNRLPRFGCPQTTQVYN 192

Query: 366 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 425
            + + L  N       K    M +    P     +T +     A +   A    + + E 
Sbjct: 193 ALLDALCANGSFAGAYKLLRRMARKGVAPDRATFSTLVDAWCAAGKLREAQAFLDDMAER 252

Query: 426 GILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
           G  P     + L+ GL   GRL + + FA  M    +L    T + L +A 
Sbjct: 253 GFHPPVRGRDLLVDGLVRAGRLEEAKAFALRMTKEGVLPDVATFNSLAEAL 303


>gi|125604075|gb|EAZ43400.1| hypothetical protein OsJ_28005 [Oryza sativa Japonica Group]
          Length = 461

 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 95/374 (25%), Positives = 157/374 (41%), Gaps = 16/374 (4%)

Query: 81  PDLVHEVLQLSYDS-PSSAVDFFRWAGRGQRLSPYA--WNLMVDVLGKNGRFEQMWNAVR 137
           PDL   V++ +  + P  A  F  W       +  A  ++ ++  L +   F  +W+   
Sbjct: 79  PDLALRVIRAAAPAEPLHAARFLAWLRAKPSFAASADHFDALLLPLARARLFTHLWSLAA 138

Query: 138 VMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
            M+  G+ LS  TF+++  SY  +   D+AV  F+ +   G  Q     N+LL A+C   
Sbjct: 139 DMRALGLPLSPSTFSAVISSYGQSRLTDQAVEVFNRLPRFGCPQTTQVYNALLDALC-AN 197

Query: 197 NQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
              + A + L R+ +K V PD  +F+ L++ W   G + EA     +M ER    P  V 
Sbjct: 198 GSFAGAYKLLRRMARKGVAPDRATFSTLVDAWCAAGKLREAQAFLDDMAERGFHPP--VR 255

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
             +  +  L+R  +++EA  F   M  E   P +  F++  + L    D   AV L    
Sbjct: 256 GRDLLVDGLVRAGRLEEAKAFALRMTKEGVLPDVATFNSLAEALCSSGDVEFAVALLADA 315

Query: 316 VGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 375
              G  L P++  Y  +I  +     +D  FR F   +  G  P    Y  I + L K  
Sbjct: 316 SSRG--LCPDISTYKVMIPAVAKAGRIDEAFRLFYAALEDGHRPFPSLYAAIIKALCKAG 373

Query: 376 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL---ENGILPLEA 432
           R  +   FF +M      P        + M +        +E  NY++   E G  P   
Sbjct: 374 RFADAFAFFGDMKSKGHPPNRPVYVMLVKMCVRGGR---FVEAANYLVEMSEAGFAPRAP 430

Query: 433 SANELLVGLRNLGR 446
           + N ++ GLR+ G+
Sbjct: 431 TFNSVVDGLRHCGK 444



 Score = 43.5 bits (101), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 63/171 (36%), Gaps = 2/171 (1%)

Query: 306 THAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYN 365
           TH   L   M  +G  L P+   ++AVI     +   D     F+++   G    +  YN
Sbjct: 131 THLWSLAADMRALGLPLSPS--TFSAVISSYGQSRLTDQAVEVFNRLPRFGCPQTTQVYN 188

Query: 366 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 425
            + + L  N       K    M +    P     +T +     A +   A    + + E 
Sbjct: 189 ALLDALCANGSFAGAYKLLRRMARKGVAPDRATFSTLVDAWCAAGKLREAQAFLDDMAER 248

Query: 426 GILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
           G  P     + L+ GL   GRL + + FA  M    +L    T + L +A 
Sbjct: 249 GFHPPVRGRDLLVDGLVRAGRLEEAKAFALRMTKEGVLPDVATFNSLAEAL 299


>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 79/358 (22%), Positives = 154/358 (43%), Gaps = 4/358 (1%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK 162
           R   +G   S  ++N ++  LG+ G+ ++       MK+D + +L T+  + D  C AGK
Sbjct: 365 RQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIPNLSTYNIMIDMLCKAGK 424

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
            + A++  D M   G+  +V+ VN ++  +C+ +        F     K   PD  ++  
Sbjct: 425 LETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCS 484

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+EG  + G V+EA K + +M++  +  P  V+ Y + +    +  + ++  K    M  
Sbjct: 485 LIEGLGRHGRVDEAYKLYEQMLDANQI-PNAVV-YTSLIRNFFKCGRKEDGHKIYNEMLR 542

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
             C P L   +  +D + K  +      L+  +  +GF  +P+   Y  +I  L      
Sbjct: 543 LGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGF--IPDARSYTILIHGLVKAGFA 600

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
              +  F  M   G   D+  YN + +   K+ +V++  +   EM     +PT +   + 
Sbjct: 601 HEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSV 660

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           I  L   D  + A  ++      GI       + L+ G   +GR+ +     EE++ +
Sbjct: 661 IDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQK 718



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 83/386 (21%), Positives = 163/386 (42%), Gaps = 40/386 (10%)

Query: 119 MVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           +++ LG++GR ++ +    +++  + + +   + S+  ++   G+ ++    ++ M   G
Sbjct: 485 LIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLG 544

Query: 178 VEQDVVAVNSLLSAICRQ-ENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEE 235
              D++ +N+ +  + +  E +  RAL     +K +   PD  S+ IL+ G  K G   E
Sbjct: 545 CSPDLLLLNTYMDCVFKAGEIEKGRAL--FQEIKNLGFIPDARSYTILIHGLVKAGFAHE 602

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
           A + F  M E  +       AY T +    +  +V++A + L  MK +   PT+  + + 
Sbjct: 603 AYELFYTMKE--QGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSV 660

Query: 296 LDILVKLNDSTHAVQLWD----------------IMVGIGF-----------------NL 322
           +D L K++    A  L++                ++ G G                   L
Sbjct: 661 IDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGL 720

Query: 323 MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
            PN+  +N ++  L   +++      F  M      P+ +TY+++   L K ++ ++   
Sbjct: 721 TPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFV 780

Query: 383 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 442
           F+ EM K  ++P      T I+ L  A     A  ++    E G +   A  N ++ GL 
Sbjct: 781 FWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLS 840

Query: 443 NLGRLSDVRRFAEEMLNRRILIYEVT 468
           N  R SD  R  EE   +   IY  T
Sbjct: 841 NANRASDAYRLFEEARLKGCSIYTKT 866



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 126/316 (39%), Gaps = 45/316 (14%)

Query: 76  GIIPTPD----LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQ 131
           G IP       L+H +++  +   +  + F+    +G  L   A+N ++D   K+G+  +
Sbjct: 579 GFIPDARSYTILIHGLVKAGFAHEAYEL-FYTMKEQGCVLDTRAYNTVIDGFCKSGKVNK 637

Query: 132 MWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS 190
            +  +  MK  G   ++ T+ S+ D      + DEA M F+     G+E +VV  +S   
Sbjct: 638 AYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSS--- 694

Query: 191 AICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
                                           L++G+ K G ++EA     E++++    
Sbjct: 695 --------------------------------LIDGFGKVGRIDEAYLIMEELMQK-GLT 721

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P +V  +   L  L++ +++ EAL   + MK   C P    +S  +  L K+     A  
Sbjct: 722 P-NVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFV 780

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
            W  M   GF   PN+  Y  +I  L    ++      F++    G   DS  YN I E 
Sbjct: 781 FWQEMQKQGFK--PNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEG 838

Query: 371 LIKNKRVHEVEKFFHE 386
           L    R  +  + F E
Sbjct: 839 LSNANRASDAYRLFEE 854



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 94/398 (23%), Positives = 161/398 (40%), Gaps = 10/398 (2%)

Query: 56  ICEILAHAS-SDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLS 112
           +C+IL        +E+ LA   + P P+LV  VL+   D  ++AV++FRWA R   +   
Sbjct: 71  VCQILETGPWGSSVENRLAELDLNPNPELVIGVLRRLKD-VNNAVNYFRWAERLTDRAHC 129

Query: 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFD 171
             A+N ++ V+ +  +F  +   +  M   G   S  T   I  S+  + K  EA     
Sbjct: 130 REAYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQ 189

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
            M          A  +L+ A+    +       F    +     +   F  L+  + +EG
Sbjct: 190 TMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREG 249

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            V+ A     EM       P+ VL Y   +    +  +VD A K    MK          
Sbjct: 250 RVDAALSLLDEMKSN-SLEPDVVL-YNVCIDCFGKAGKVDMAWKXFHEMKANGLVLDDVT 307

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           +++ + +L K +    AV+L++ M       +P    YN +I         ++ +   ++
Sbjct: 308 YTSMIGVLCKADRLNEAVELFEHM--DQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLER 365

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
               G  P  ++YN I  CL +  +V E  K F EM K +  P        I ML  A +
Sbjct: 366 QRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEM-KKDAIPNLSTYNIMIDMLCKAGK 424

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 449
            E A+ + + + + G+ P   + N ++  L    RL D
Sbjct: 425 LETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDD 462



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 89/195 (45%), Gaps = 2/195 (1%)

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF 320
           +++ I+ +++ EA  F++ M+     P    ++N +  L    DS   + L+  M  +G+
Sbjct: 172 VLSFIKSRKLREAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGY 231

Query: 321 NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEV 380
            +  N+ ++  +I +      VD      D+M  +   PD + YN+  +C  K  +V   
Sbjct: 232 AV--NVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMA 289

Query: 381 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 440
            K FHEM  N      +   + I +L  AD    A+E++ ++ +N  +P   + N +++G
Sbjct: 290 WKXFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMG 349

Query: 441 LRNLGRLSDVRRFAE 455
               G+  D     E
Sbjct: 350 YGMAGKFEDAYSLLE 364


>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
 gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 99/449 (22%), Positives = 190/449 (42%), Gaps = 45/449 (10%)

Query: 54  RIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQ---R 110
           R  CE+     + +    +   G+IP     +++L L   S  +   +  +A   +   +
Sbjct: 129 RACCELKRGDDAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAEMFRMRIK 188

Query: 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMS 169
            S   +N+M++VL K G+ ++    + +M+  G+  ++ T+ +I   YC  G+ + A M 
Sbjct: 189 SSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVEGARMI 248

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWE 228
           FD+M   GV+ D     S +S +C+ E +   A   L ++K+I + P   ++  L++G+ 
Sbjct: 249 FDLMKCRGVKPDSYTYGSFISGMCK-EGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYC 307

Query: 229 KEGNVE-----------------------------------EANKTFGEMVERFEWNPEH 253
            +GN+E                                   EA+    EM E+    P+ 
Sbjct: 308 NKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEK-GLVPDS 366

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
           V  Y   +    R   V +A      M  +   PT   +++ + +L K      A  L++
Sbjct: 367 V-TYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFE 425

Query: 314 IMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 373
            +V  G  + P+LIM+NA+I   C N ++D  F    +M      PD +T+N + +   +
Sbjct: 426 KIVRKG--IFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCR 483

Query: 374 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 433
             +V    +   EM     +P  ++  T I+      + + A  + + +L  G  P   +
Sbjct: 484 EGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLLT 543

Query: 434 ANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
            N L+ GL          +  +EM+++ I
Sbjct: 544 YNALIQGLCKNEEGDHAEQLLKEMISKGI 572



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 104/491 (21%), Positives = 206/491 (41%), Gaps = 30/491 (6%)

Query: 12  IKNKIIPSSSSTTTSPTSHNPHRPTRPRFPTHLDAPYISSSARIIC-EILAHASSDDIES 70
           + +KI PS  ST  +     P    +  F TH+    +   ++ +   +++HA +     
Sbjct: 31  LAHKITPSLISTALTSLHKTPDLAFQ--FVTHIGFGDLDIKSKCLAMAVISHAPNSK--- 85

Query: 71  ALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYA-WNLMVDVLGKNGRF 129
                   P+  L+ E +     S     +    A     +  Y  ++L++    +  R 
Sbjct: 86  --------PSLQLLKETINSGVYSIREVFNELGVARGVLGIKTYVLYDLLIRACCELKRG 137

Query: 130 EQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSL 188
           +  +    +MK  GV+  +     +   +  + + ++A + +  M    ++  VV  N +
Sbjct: 138 DDAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAEMFRMRIKSSVVTFNIM 197

Query: 189 LSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF 247
           ++ +C+ E +  +A EF+  ++ + + P+  ++  ++ G+   G VE A   F  M  R 
Sbjct: 198 INVLCK-EGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVEGARMIFDLMKCR- 255

Query: 248 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 307
              P+    Y +F+  + +  +++EA   L  MK     PT   ++  +D      +   
Sbjct: 256 GVKPDSY-TYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEM 314

Query: 308 AVQLWDIMVGIGFNLMPNLIMYNAVIGLL---CNNDDVDNVFRFFDQMVFHGAFPDSLTY 364
           A    D MV  G  LMP +  YN +I  L   C  D+ D + +   +M   G  PDS+TY
Sbjct: 315 AFDYRDKMVREG--LMPTVSTYNMLIHALFLDCKMDEADGIIK---EMSEKGLVPDSVTY 369

Query: 365 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 424
           N++     +   V +      EMI    QPT +   + I +L      + A +++  I+ 
Sbjct: 370 NILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVR 429

Query: 425 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--S 482
            GI P     N L+ G    G +       +EM   +++  EVT + L +    E +  +
Sbjct: 430 KGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEA 489

Query: 483 MRDIFDSLERR 493
            R++ + ++ R
Sbjct: 490 ARELIEEMKSR 500



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 130/327 (39%), Gaps = 46/327 (14%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG +   Y +   +  + K G+ E+    +  MKE G+  +  T+ ++ D YC  G  + 
Sbjct: 255 RGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEM 314

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAI---CRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
           A    D M   G+   V   N L+ A+   C+ +       E     +K + PD  ++ I
Sbjct: 315 AFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEM---SEKGLVPDSVTYNI 371

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+ G+ + GNV++A     EM+ +    P  V  Y + +  L +  ++ +A      +  
Sbjct: 372 LINGYCRCGNVKKAFTLHDEMISK-GIQPTRV-TYTSLIYVLSKRGRMKQADDLFEKIVR 429

Query: 283 ENCFPTLKFFSNALD------------ILVKLNDSTHAV--------------------- 309
           +  FP L  F+  +D             ++K  D    V                     
Sbjct: 430 KGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEA 489

Query: 310 --QLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMI 367
             +L + M   G    P+ I YN +I       D+ + FR  D+M+  G  P  LTYN +
Sbjct: 490 ARELIEEMKSRGIK--PDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNAL 547

Query: 368 FECLIKNKRVHEVEKFFHEMIKNEWQP 394
            + L KN+     E+   EMI     P
Sbjct: 548 IQGLCKNEEGDHAEQLLKEMISKGITP 574


>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 79/358 (22%), Positives = 154/358 (43%), Gaps = 4/358 (1%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK 162
           R   +G   S  ++N ++  LG+ G+ ++       MK+D + +L T+  + D  C AGK
Sbjct: 365 RQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIPNLSTYNIMIDMLCKAGK 424

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
            + A++  D M   G+  +V+ VN ++  +C+ +        F     K   PD  ++  
Sbjct: 425 LETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCS 484

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+EG  + G V+EA K + +M++  +  P  V+ Y + +    +  + ++  K    M  
Sbjct: 485 LIEGLGRHGRVDEAYKLYEQMLDANQI-PNAVV-YTSLIRNFFKCGRKEDGHKIYNEMLR 542

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
             C P L   +  +D + K  +      L+  +  +GF  +P+   Y  +I  L      
Sbjct: 543 LGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGF--IPDARSYTILIHGLVKAGFA 600

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
              +  F  M   G   D+  YN + +   K+ +V++  +   EM     +PT +   + 
Sbjct: 601 HEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSV 660

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           I  L   D  + A  ++      GI       + L+ G   +GR+ +     EE++ +
Sbjct: 661 IDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQK 718



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 83/386 (21%), Positives = 163/386 (42%), Gaps = 40/386 (10%)

Query: 119 MVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           +++ LG++GR ++ +    +++  + + +   + S+  ++   G+ ++    ++ M   G
Sbjct: 485 LIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLG 544

Query: 178 VEQDVVAVNSLLSAICRQ-ENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEE 235
              D++ +N+ +  + +  E +  RAL     +K +   PD  S+ IL+ G  K G   E
Sbjct: 545 CSPDLLLLNTYMDCVFKAGEIEKGRAL--FQEIKNLGFIPDARSYTILIHGLVKAGFAHE 602

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
           A + F  M E  +       AY T +    +  +V++A + L  MK +   PT+  + + 
Sbjct: 603 AYELFYTMKE--QGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSV 660

Query: 296 LDILVKLNDSTHAVQLWD----------------IMVGIGF-----------------NL 322
           +D L K++    A  L++                ++ G G                   L
Sbjct: 661 IDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGL 720

Query: 323 MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
            PN+  +N ++  L   +++      F  M      P+ +TY+++   L K ++ ++   
Sbjct: 721 TPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFV 780

Query: 383 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 442
           F+ EM K  ++P      T I+ L  A     A  ++    E G +   A  N ++ GL 
Sbjct: 781 FWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLS 840

Query: 443 NLGRLSDVRRFAEEMLNRRILIYEVT 468
           N  R SD  R  EE   +   IY  T
Sbjct: 841 NANRASDAYRLFEEARLKGCSIYTKT 866



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 126/316 (39%), Gaps = 45/316 (14%)

Query: 76  GIIPTPD----LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQ 131
           G IP       L+H +++  +   +  + F+    +G  L   A+N ++D   K+G+  +
Sbjct: 579 GFIPDARSYTILIHGLVKAGFAHEAYEL-FYTMKEQGCVLDTRAYNTVIDGFCKSGKVNK 637

Query: 132 MWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS 190
            +  +  MK  G   ++ T+ S+ D      + DEA M F+     G+E +VV  +S   
Sbjct: 638 AYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSS--- 694

Query: 191 AICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
                                           L++G+ K G ++EA     E++++    
Sbjct: 695 --------------------------------LIDGFGKVGRIDEAYLIMEELMQK-GLT 721

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P +V  +   L  L++ +++ EAL   + MK   C P    +S  +  L K+     A  
Sbjct: 722 P-NVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFV 780

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
            W  M   GF   PN+  Y  +I  L    ++      F++    G   DS  YN I E 
Sbjct: 781 FWQEMQKQGFK--PNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEG 838

Query: 371 LIKNKRVHEVEKFFHE 386
           L    R  +  + F E
Sbjct: 839 LSNANRASDAYRLFEE 854



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 95/398 (23%), Positives = 162/398 (40%), Gaps = 10/398 (2%)

Query: 56  ICEILAHAS-SDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLS 112
           +C+IL        +E+ LA   + P P+LV  VL+   D  ++AV++FRWA R   +   
Sbjct: 71  VCQILETGPWGSSVENRLAELDLNPNPELVIGVLRRLKD-VNNAVNYFRWAERLTDRAHC 129

Query: 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFD 171
             A+N ++ V+ +  +F  +   +  M   G   S  T   I  S+  + K  EA     
Sbjct: 130 REAYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQ 189

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
            M          A  +L+ A+    +       F    +     +   F  L+  + +EG
Sbjct: 190 TMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREG 249

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            V+ A     EM       P+ VL Y   +    +  +VD A KF   MK          
Sbjct: 250 RVDAALSLLDEMKSN-SLEPDVVL-YNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDDVT 307

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           +++ + +L K +    AV+L++ M       +P    YN +I         ++ +   ++
Sbjct: 308 YTSMIGVLCKADRLNEAVELFEHM--DQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLER 365

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
               G  P  ++YN I  CL +  +V E  K F EM K +  P        I ML  A +
Sbjct: 366 QRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEM-KKDAIPNLSTYNIMIDMLCKAGK 424

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 449
            E A+ + + + + G+ P   + N ++  L    RL D
Sbjct: 425 LETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDD 462



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 90/195 (46%), Gaps = 2/195 (1%)

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF 320
           +++ I+ +++ EA  F++ M+     P    ++N +  L    DS   + L+  M  +G+
Sbjct: 172 VLSFIKSRKLREAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGY 231

Query: 321 NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEV 380
            +  N+ ++  +I +      VD      D+M  +   PD + YN+  +C  K  +V   
Sbjct: 232 AV--NVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMA 289

Query: 381 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 440
            KFFHEM  N      +   + I +L  AD    A+E++ ++ +N  +P   + N +++G
Sbjct: 290 WKFFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMG 349

Query: 441 LRNLGRLSDVRRFAE 455
               G+  D     E
Sbjct: 350 YGMAGKFEDAYSLLE 364


>gi|125582652|gb|EAZ23583.1| hypothetical protein OsJ_07284 [Oryza sativa Japonica Group]
          Length = 667

 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 78/352 (22%), Positives = 152/352 (43%), Gaps = 42/352 (11%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G R S  A+  +VD   +  + ++    ++ M E G+   + T  ++ ++YC  G+  +A
Sbjct: 106 GWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDA 165

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLE 225
           +   ++M + G + +V   N+L+   C  E +  +A+  LN+++   V+PD  ++ +L+ 
Sbjct: 166 LRVLELMKLRGCKPNVWTYNALVQGFC-NEGKVHKAMTLLNKMRACGVNPDAVTYNLLIR 224

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G   +G++E                                      A + LR+M+G+  
Sbjct: 225 GQCIDGHIES-------------------------------------AFRLLRLMEGDGL 247

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
                 ++  ++ L K   +  A  L+D +   G    PN + +N++I  LC +   D  
Sbjct: 248 IADQYTYNALINALCKDGRTDQACSLFDSLETRGIK--PNAVTFNSLINGLCKSGKADIA 305

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
           ++F ++MV  G  PD+ TY+   E L K K   E   F  EM++ + +P+ +N    I  
Sbjct: 306 WKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHK 365

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           LL      +    W  ++ +G  P   +    +      GRL++      EM
Sbjct: 366 LLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEM 417



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 128/311 (41%), Gaps = 8/311 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF S+   YC   + D A   FD M + G  QDVV+  +L+  +C +  +   A+E    
Sbjct: 12  TFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLC-EAGRIDEAVELFGE 70

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           + +   PD   +A L++G       EE       M E   W P    AY   +    R +
Sbjct: 71  MDQ---PDMHMYAALVKGLCNAERGEEGLLMLRRMKE-LGWRPS-TRAYAAVVDFRCRER 125

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           +  EA + L+ M  +   P +   +  ++   K    + A+++ ++M   G    PN+  
Sbjct: 126 KAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCK--PNVWT 183

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           YNA++   CN   V       ++M   G  PD++TYN++      +  +    +    M 
Sbjct: 184 YNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLME 243

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
            +            I  L      + A  +++ +   GI P   + N L+ GL   G+  
Sbjct: 244 GDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKAD 303

Query: 449 DVRRFAEEMLN 459
              +F E+M++
Sbjct: 304 IAWKFLEKMVS 314



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 79/353 (22%), Positives = 144/353 (40%), Gaps = 20/353 (5%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
           G G     Y +N +++ L K+GR +Q  +    ++  G+  +  TF S+ +  C +GK D
Sbjct: 244 GDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKAD 303

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAIL 223
            A    + M   G   D    +S +  +C+ +  +   L F+   ++K V P   ++ I+
Sbjct: 304 IAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKG-SQEGLSFIGEMLQKDVKPSTVNYTIV 362

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           +    KE N     +T+GEMV     NP+ V+ Y T +       +++EA   L  M   
Sbjct: 363 IHKLLKERNYGLVARTWGEMVSS-GCNPD-VVTYTTSMRAYCIEGRLNEAENVLMEMSKN 420

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG--------FNLMPNLIMYNAVIGL 335
                   ++  +D    +  + HAV +   M  +         F L+ +L+    V  +
Sbjct: 421 GVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDV 480

Query: 336 L-------CNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           L           ++ +VF  FD M  +   P+S TY+ I E   ++ R  E       M 
Sbjct: 481 LPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMK 540

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 441
           ++            +T    +     A  +   ++++G +P   S   LL GL
Sbjct: 541 EDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGL 593



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 74/141 (52%), Gaps = 6/141 (4%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           ++ +++   ++GR E+  + V +MKED + L+   + ++   +C + +Y +A +    M 
Sbjct: 516 YSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMI 575

Query: 175 MHGVEQDVVAVNSLLSA-ICRQENQTSRALE-FLNRVKKIVDPDGDSFAILLEGWEKEGN 232
            HG    +++   LLS  IC  E QT +A E F+N   K   PD   + ++++G  K+G+
Sbjct: 576 QHGFIPQLMSYQHLLSGLIC--EGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGH 633

Query: 233 VEEANKTFGEMVERFEWNPEH 253
             + ++    M+ER    P H
Sbjct: 634 -SDISREMIIMLERMNCRPSH 653



 Score = 45.8 bits (107), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 69/189 (36%), Gaps = 31/189 (16%)

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           P+   +N++I   C  + VD     FD+M   G   D ++Y  + E L +  R+ E  + 
Sbjct: 8   PDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVEL 67

Query: 384 FHEMIKNE-------------------------------WQPTPLNCATAITMLLDADEP 412
           F EM + +                               W+P+    A  +       + 
Sbjct: 68  FGEMDQPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKA 127

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
           + A E+   + E G+ P   +   ++      GR+SD  R  E M  R       T + L
Sbjct: 128 KEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNAL 187

Query: 473 KKAFYNESR 481
            + F NE +
Sbjct: 188 VQGFCNEGK 196



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 53/271 (19%), Positives = 103/271 (38%), Gaps = 24/271 (8%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ +   +YC  G+ +EA      MS +GV  D +A N+L+        QT  A+  L +
Sbjct: 393 TYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHA-SIGQTDHAVSILKQ 451

Query: 209 VKKIVD-PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           +  +   P+  ++ ILL    +   VE+               P  V           + 
Sbjct: 452 MTSVASVPNQFTYFILLRHLVRMRLVEDV----------LPLTPAGVW----------KA 491

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
            ++ +      VMK     P    +S+ L+   +   +  A  L  +M     +L  N  
Sbjct: 492 IELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISL--NED 549

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
           +Y A++   C +    + +     M+ HG  P  ++Y  +   LI   +  + ++ F   
Sbjct: 550 IYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIFMNS 609

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEI 418
              ++ P  +     I  L+     +I+ E+
Sbjct: 610 RWKDYSPDEIVWKVIIDGLIKKGHSDISREM 640


>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 148/352 (42%), Gaps = 36/352 (10%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           ++ +  +Y   G+ +EA    D MS  GV  D+   N+++S + +       +   L   
Sbjct: 476 YSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQ 535

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER--FEWNPEH-------------- 253
            + + PD  +F   + G+ K G + EA K F EM++      NP +              
Sbjct: 536 GRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLM 595

Query: 254 -----------------VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
                            V     F+  L++  +V EALK    +K +   P +  +S+ +
Sbjct: 596 EALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLI 655

Query: 297 DILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG 356
               K  +   A +L D M   G  + PN+ +YNA++  LC + D+    + FD M   G
Sbjct: 656 SGFCKQGEVEKAFELHDEMCLKG--IAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKG 713

Query: 357 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 416
             PDS+TY+ + +   K++ V E    FHEM     QP        +       + E A+
Sbjct: 714 LEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAM 773

Query: 417 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 468
            ++  +L+ G      S N L+ G     ++ +  +  +EM+ ++I+   VT
Sbjct: 774 NLFREMLQKG-FATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVT 824



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 96/421 (22%), Positives = 184/421 (43%), Gaps = 17/421 (4%)

Query: 59  ILAHASSDDIESA------LACTGIIPTPDLVHEVLQ-LSYDSPSSAVDFFRWAGRGQRL 111
           I+A+AS   IE A      ++C+G+ P     + ++  LS          +    +G+ L
Sbjct: 480 IMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGL 539

Query: 112 SPYAWNLMVDVLG--KNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVM 168
            P A      +LG  K G+  +       M + G++ + P +  + + +  AG   EA+ 
Sbjct: 540 KPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALS 599

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGW 227
            F  +   GV  DV   ++ +  + +   +   AL+  + +K K + PD  +++ L+ G+
Sbjct: 600 IFRRLHALGVLPDVQTCSAFIHGLLKN-GRVQEALKVFSELKEKGLVPDVFTYSSLISGF 658

Query: 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
            K+G VE+A +   EM    +    ++  Y   +  L +   +  A K    M  +   P
Sbjct: 659 CKQGEVEKAFELHDEMC--LKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEP 716

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFR 347
               +S  +D   K  +   A  L+  M   G  + P+  +YNA++   C   D++    
Sbjct: 717 DSVTYSTMIDGYCKSENVAEAFSLFHEMPSKG--VQPHSFVYNALVHGCCKEGDMEKAMN 774

Query: 348 FFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 407
            F +M+  G F  +L++N + +   K+ ++ E  + F EMI  +  P  +   T I    
Sbjct: 775 LFREMLQKG-FATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHC 833

Query: 408 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEV 467
            A + E A  ++  + E  ++    +   L+ G   LG+ S+V    E+M+ + +   EV
Sbjct: 834 KAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEV 893

Query: 468 T 468
           T
Sbjct: 894 T 894



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/354 (21%), Positives = 156/354 (44%), Gaps = 11/354 (3%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +  +V  L K G        +  M E G+  +   ++ + +  C  G  DEAV     
Sbjct: 229 YTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGDIDEAVELKRS 288

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M   G+  +      + + +CR +      L F    K  + PD ++ + L++G+ +EG+
Sbjct: 289 MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 348

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           ++E  +    MV      P +++ Y   +  L +  ++++A + L+ M    C P  + F
Sbjct: 349 IDEVLRIKDVMVSC--GIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTF 406

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
              ++   + ++   A++L D M     NL+P+ + Y A+I  LC+  D+    +  ++M
Sbjct: 407 CLLIEGYCREHNMGRALELLDEMEK--RNLVPSAVSYGAMINGLCHCKDLSLANKLLEKM 464

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
            F G  P+ + Y+++        R+ E  +    M  +   P        I+ L  A + 
Sbjct: 465 TFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKM 524

Query: 413 EIAIEIWNYILE---NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
           E   E   Y+LE    G+ P   +    ++G    G++++  ++ +EML+  ++
Sbjct: 525 E---EASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLM 575



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 146/335 (43%), Gaps = 8/335 (2%)

Query: 125 KNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV 183
           KNGR ++       +KE G++  + T++S+   +C  G+ ++A    D M + G+  ++ 
Sbjct: 625 KNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIF 684

Query: 184 AVNSLLSAICRQEN-QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
             N+L+  +C+  + Q +R L F    +K ++PD  +++ +++G+ K  NV EA   F E
Sbjct: 685 IYNALVDGLCKSGDIQRARKL-FDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHE 743

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
           M  +      H   Y   +    +   +++A+   R M  +  F T   F+  +D   K 
Sbjct: 744 MPSK--GVQPHSFVYNALVHGCCKEGDMEKAMNLFREML-QKGFATTLSFNTLIDGYCKS 800

Query: 303 NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSL 362
                A QL+  M  I   +MP+ + Y  VI   C    ++     F +M       D++
Sbjct: 801 CKIQEASQLFQEM--IAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTV 858

Query: 363 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 422
           TY  +     K  +  EV   F +M+    +P  +     I      D    A ++ + +
Sbjct: 859 TYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEV 918

Query: 423 LENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           +  G+L      + L+  L     L++  +  +EM
Sbjct: 919 VGKGMLTKGTIHDLLITALCKREDLTEASKLLDEM 953



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 84/405 (20%), Positives = 166/405 (40%), Gaps = 9/405 (2%)

Query: 83  LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED 142
           ++ ++++  Y S S       W       SP  +++++D   + G  ++  N   V K D
Sbjct: 128 VLTQMIRTPYSSSSILDSVLFWFRNYGGSSPVVFDILIDSYKRMGMLDEAANVFFVAKND 187

Query: 143 GVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSR 201
            +L SL    S+       G  +     ++ M    +  DV     L+ A+C+  +    
Sbjct: 188 SILISLIRCNSLLKDLLKCGMMELFWKVYNGMLDAKMGFDVYTYTYLVGALCKTGDLRGA 247

Query: 202 ALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFL 261
               +   +K ++P+   +++++EG  + G+++EA +    M E+      +   Y    
Sbjct: 248 KRVLIEMDEKGLNPNEFIYSLVIEGMCQVGDIDEAVELKRSMGEK--GLVPNTYTYTIIT 305

Query: 262 ITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFN 321
             L R K+++EA      M+     P     S  +D  ++  D    +++ D+MV  G  
Sbjct: 306 AGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIP 365

Query: 322 LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 381
           +  NLI YN +I  LC    ++        MV  G  P+S T+ ++ E   +   +    
Sbjct: 366 I--NLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRAL 423

Query: 382 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 441
           +   EM K    P+ ++    I  L    +  +A ++   +  +G+ P     + L++  
Sbjct: 424 ELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAY 483

Query: 442 RNLGRLSDVRRFAEEM----LNRRILIYEVTMHKLKKAFYNESRS 482
            + GR+ + RR  + M    +   I  Y   +  L KA   E  S
Sbjct: 484 ASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEAS 528



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 84/388 (21%), Positives = 160/388 (41%), Gaps = 12/388 (3%)

Query: 98  AVDFFRWAG-RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTF---ASI 153
           AV+  R  G +G   + Y + ++   L +  R  +       M++ G+   P +   +++
Sbjct: 282 AVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLK--PDYNACSAL 339

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI- 212
            D +   G  DE +   DVM   G+  +++  N L+  +C+   +  +A E L  +  + 
Sbjct: 340 IDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKF-GKMEKAAEILKGMVTLG 398

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
             P+  +F +L+EG+ +E N+  A +   EM E+    P  V +Y   +  L   K +  
Sbjct: 399 CKPNSRTFCLLIEGYCREHNMGRALELLDEM-EKRNLVPSAV-SYGAMINGLCHCKDLSL 456

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAV 332
           A K L  M      P +  +S  +           A +L D M   G  + P++  YNA+
Sbjct: 457 ANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSG--VAPDIFCYNAI 514

Query: 333 IGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 392
           I  L     ++    +  ++   G  PD++T+        K  ++ E  K+F EM+ +  
Sbjct: 515 ISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGL 574

Query: 393 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 452
            P        I     A     A+ I+  +   G+LP   + +  + GL   GR+ +  +
Sbjct: 575 MPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALK 634

Query: 453 FAEEMLNRRILIYEVTMHKLKKAFYNES 480
              E+  + ++    T   L   F  + 
Sbjct: 635 VFSELKEKGLVPDVFTYSSLISGFCKQG 662



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 72/358 (20%), Positives = 132/358 (36%), Gaps = 74/358 (20%)

Query: 101  FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGA 160
            F     +G +   + +N +V    K G  E+  N  R M + G  +  +F ++ D YC +
Sbjct: 741  FHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKS 800

Query: 161  GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSF 220
             K  EA   F  M                                   + K + PD  ++
Sbjct: 801  CKIQEASQLFQEM-----------------------------------IAKQIMPDHVTY 825

Query: 221  AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
              +++   K G +EEAN  F EM ER                       + + + +  +M
Sbjct: 826  TTVIDWHCKAGKMEEANLLFKEMQER---------------------NLIVDTVTYTSLM 864

Query: 281  KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
             G N                KL  S+    L++ MV  G    P+ + Y  VI   C  D
Sbjct: 865  YGYN----------------KLGQSSEVFALFEKMVAKGVK--PDEVTYGLVIYAHCKED 906

Query: 341  DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
            ++   F+  D++V  G       ++++   L K + + E  K   EM +   +P+   C 
Sbjct: 907  NLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACN 966

Query: 401  TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
            T +    +A + + A  ++  +   G++P   +  +L+ G  N     D R   ++++
Sbjct: 967  TLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLVNGNLNDTDSEDARNLIKQLV 1024



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 61/305 (20%), Positives = 122/305 (40%), Gaps = 37/305 (12%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +N +VD L K+G  ++       M E G+     T++++ D YC +    EA   F  
Sbjct: 684 FIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHE 743

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M   GV+      N+L+   C+ E    +A+     + +       SF  L++G+ K   
Sbjct: 744 MPSKGVQPHSFVYNALVHGCCK-EGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCK 802

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           ++EA++ F EM+ + +  P+HV  Y T +    +  +++EA    + M+  N       +
Sbjct: 803 IQEASQLFQEMIAK-QIMPDHV-TYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTY 860

Query: 293 SNALDILVKLNDSTHAVQLWDIMVG---------------------------------IG 319
           ++ +    KL  S+    L++ MV                                  +G
Sbjct: 861 TSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVG 920

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
             ++    +++ +I  LC  +D+    +  D+M   G  P     N +     +  ++ E
Sbjct: 921 KGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACNTLVRSFHEAGKMDE 980

Query: 380 VEKFF 384
             + F
Sbjct: 981 ATRVF 985


>gi|326490085|dbj|BAJ94116.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 641

 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 91/391 (23%), Positives = 168/391 (42%), Gaps = 40/391 (10%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++  L +NG FEQ+  A+  M E G    L  +A+I D  C  G ++ A      M 
Sbjct: 251 FNTLIAYLCRNGLFEQVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMP 310

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
            +G++ +VV  N++L  +C  E             ++    D  +F IL++ + + G V+
Sbjct: 311 SYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVD 370

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
              +   +M+E     P+ V+ Y T +    +   VDEA+  L+ M    C P    ++ 
Sbjct: 371 RVIELLEQMLEH-GCIPD-VITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTI 428

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
            L  L +      A +L   M+  G   +PN + +N +I  +C    V+       QM+ 
Sbjct: 429 VLKGLCRAERWVDAQELISHMIQQG--CLPNPVTFNTLINFMCKKGLVEQAIELLKQMLV 486

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL---NCATAI-------- 403
           +G  PD ++Y+ + + L K  +  E  +  + MI     P  +   + A+A+        
Sbjct: 487 NGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSREGRTDK 546

Query: 404 -----------TMLLDAD-------------EPEIAIEIWNYILENGILPLEASANELLV 439
                      T+  DA              E + AI+ + Y++ NG +P E++   L+ 
Sbjct: 547 IIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTILIR 606

Query: 440 GLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 470
           GL + G + + +    E+ +RR +   +  H
Sbjct: 607 GLASEGLVREAQDLLSELCSRRAVRKHLVRH 637



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 98/424 (23%), Positives = 179/424 (42%), Gaps = 14/424 (3%)

Query: 76  GIIPTPDLVHEVLQLSYDSPS--SAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQM 132
           G   TP + H +L+ +       SAV   +    +G  L     NL+V  + + G  ++ 
Sbjct: 138 GCAATPPMCHVILEAACRGGGFRSAVRALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEG 197

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +R +   G    + ++ ++    C A ++D+       M   G   +V   N+L++ 
Sbjct: 198 VELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAY 257

Query: 192 ICRQE--NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW 249
           +CR     Q   AL  +   +    PD   +A +++G  K+G+ E AN     M   +  
Sbjct: 258 LCRNGLFEQVHEALSQMP--EHGCTPDLRMYATIIDGICKDGHHEVANDILSRM-PSYGL 314

Query: 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV 309
            P +V+ Y T L  L   ++ +EA   L  M  E+C      F+  +D   +       +
Sbjct: 315 KP-NVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVI 373

Query: 310 QLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFE 369
           +L + M+  G   +P++I Y  VI   C    VD        M   G  P++++Y ++ +
Sbjct: 374 ELLEQMLEHG--CIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLK 431

Query: 370 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
            L + +R  + ++    MI+    P P+   T I  +      E AIE+   +L NG  P
Sbjct: 432 GLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLVEQAIELLKQMLVNGCSP 491

Query: 430 LEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDI--F 487
              S + ++ GL   G+  +       M+N+ I    +    +  A   E R+ + I  F
Sbjct: 492 DLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMF 551

Query: 488 DSLE 491
           DS++
Sbjct: 552 DSIQ 555



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/358 (24%), Positives = 160/358 (44%), Gaps = 15/358 (4%)

Query: 39  RFPTHLDAPYISSSARII---CEILAHASSDDIESALACTGIIPTPDLVHEVLQ--LSYD 93
           + P H   P +   A II   C+   H  ++DI S +   G+ P     + VL+   S +
Sbjct: 273 QMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAE 332

Query: 94  SPSSAVDFFRWAGRGQRLSPY---AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPT 149
               A D    A   Q   P     +N++VD   +NG  +++   +  M E G +  + T
Sbjct: 333 RWEEAEDLL--AEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVIT 390

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           + ++ + +C  G  DEAVM    MS  G + + ++   +L  +CR E          + +
Sbjct: 391 YTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMI 450

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
           ++   P+  +F  L+    K+G VE+A +   +M+     +P+ +++Y T +  L +  +
Sbjct: 451 QQGCLPNPVTFNTLINFMCKKGLVEQAIELLKQMLVN-GCSPD-LISYSTVIDGLGKAGK 508

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY 329
            +EAL+ L VM  +   P    +S+    L +   +   +Q++D +      +  +  +Y
Sbjct: 509 TEEALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDA--TVRSDAALY 566

Query: 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
           NAVI  LC   + D    FF  MV +G  P+  TY ++   L     V E +    E+
Sbjct: 567 NAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTILIRGLASEGLVREAQDLLSEL 624


>gi|449431996|ref|XP_004133786.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Cucumis sativus]
 gi|449477985|ref|XP_004155184.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Cucumis sativus]
          Length = 485

 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 101/409 (24%), Positives = 173/409 (42%), Gaps = 18/409 (4%)

Query: 63  ASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMV 120
           A+   + + L    I  + +LV  VL    +   +A  FF WAG+  G   S   ++ M+
Sbjct: 25  ANRIQVRNKLEHCFIKVSGELVVAVLSRIRNDWEAAFTFFVWAGKQPGYAHSVREYHSMI 84

Query: 121 DVLGKNGRFEQMWNAVRVMKE----DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176
            +LGK  +F+  W  +  M+       +++  T   +   YC      +A+ +F      
Sbjct: 85  SILGKMRKFDTAWALIDEMRGGTPGSSLVTPQTLLIMIRRYCAVHDVAKAINTFYAHKRF 144

Query: 177 GVEQDVVAVNSLLSAICRQEN-QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEE 235
           G    +    SLLSA+CR +N + +  L F N  K +   +  SF I+L GW   G++ +
Sbjct: 145 GFNIGLEEFQSLLSALCRYKNVKDAEYLLFCN--KDVFPFNTKSFNIILNGWCVIGSLRD 202

Query: 236 ANKTFGEMVERFEWNPEH-VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
             + + EM  R      H  ++Y + +    + + + + L+    MK     P  K ++ 
Sbjct: 203 TERVWKEMTRR---GISHDAVSYASCISCYSKVRNLHKVLRLFEDMKRMKIDPDRKVYNA 259

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
            +  L K      A  L   M   G  ++ N++ YN+VI  LC     D     F++++ 
Sbjct: 260 VIHSLAKGRCLKEAADLIKTMEEKG--IIANVVTYNSVIKPLCKARRFDEARAVFEELLQ 317

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 414
            G  P   TY+     L   + + E+ K    M  N   PT       I       + + 
Sbjct: 318 RGLCPTIQTYHAFLRFLRTEEEIFELLKKMRTMGCN---PTTDTYIMLIRKFCRWRQLDN 374

Query: 415 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
              IW+ + ENGI P  +S   L+ GL   G+L D  ++  EM  + +L
Sbjct: 375 VSRIWHEMSENGISPDRSSYIVLIHGLFLNGKLEDAHKYYLEMKEKDLL 423



 Score = 42.4 bits (98), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 70/168 (41%), Gaps = 4/168 (2%)

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           N   +N ++   C    + +  R + +M   G   D+++Y     C  K + +H+V + F
Sbjct: 183 NTKSFNIILNGWCVIGSLRDTERVWKEMTRRGISHDAVSYASCISCYSKVRNLHKVLRLF 242

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
            +M + +  P        I  L      + A ++   + E GI+    + N ++  L   
Sbjct: 243 EDMKRMKIDPDRKVYNAVIHSLAKGRCLKEAADLIKTMEEKGIIANVVTYNSVIKPLCKA 302

Query: 445 GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLER 492
            R  + R   EE+L R +     T H    AF    R+  +IF+ L++
Sbjct: 303 RRFDEARAVFEELLQRGLCPTIQTYH----AFLRFLRTEEEIFELLKK 346


>gi|356505993|ref|XP_003521773.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Glycine max]
          Length = 570

 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 104/473 (21%), Positives = 196/473 (41%), Gaps = 59/473 (12%)

Query: 55  IICEILAHA--SSDDIESALACTGIIPT---PDLV-HEVLQLSY------DSPSSAVDFF 102
           ++C  L H   +S  I+ A+    I+     PDL+ +  +   +      DS    +D  
Sbjct: 93  VLCTKLIHGLFTSKTIDKAIQVMHILENHGHPDLIAYNAIITGFCRANRIDSAYQVLD-- 150

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWN-AVRVMKEDGVLSLPTFASIFDSYCGAG 161
           R   +G       +N+++  L   G  +       +++KE+   ++ T+  + ++    G
Sbjct: 151 RMKNKGFSPDIVTYNILIGSLCSRGMLDSALEFKNQLLKENCKPTVVTYTILIEATLLQG 210

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSF 220
             DEA+   D M    ++ D+   NS++  +CR E    RA + ++ +  K   PD  ++
Sbjct: 211 GIDEAMKLLDEMLEINLQPDMFTYNSIIRGMCR-EGYVDRAFQIISSISSKGYAPDVITY 269

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
            ILL G   +G  E   +   +MV R      +V+ Y   + ++ R  +V+E +  L+ M
Sbjct: 270 NILLRGLLNQGKWEAGYELMSDMVAR--GCEANVVTYSVLISSVCRDGKVEEGVGLLKDM 327

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
           K +   P    +   +  L K      A+++ D+M+  G   +P+++ YN ++  LC   
Sbjct: 328 KKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISDG--CVPDIVNYNTILACLCKQK 385

Query: 341 DVDNVFRFFD-----------------------------------QMVFHGAFPDSLTYN 365
             D     F+                                   +M+  G  PD +TYN
Sbjct: 386 RADEALSIFEKLGEVGCSPNASSYNSMFSALWSTGHKVRALGMILEMLDKGVDPDGITYN 445

Query: 366 MIFECLIKNKRVHEVEKFF--HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 423
            +  CL ++  V E  +     EM  +E +P+ ++    +  L        AIE+   ++
Sbjct: 446 SLISCLCRDGMVDEAIELLVDMEMESSECKPSVVSYNIVLLGLCKVSRVSDAIEVLAAMV 505

Query: 424 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
           + G  P E +   L+ G+   G L+D R  A  ++N    I E +  +L K F
Sbjct: 506 DKGCRPNETTYTFLIEGIGFGGCLNDARDLATTLVNMDA-ISEHSFERLYKTF 557



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 102/232 (43%), Gaps = 5/232 (2%)

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           K GN  E+      +V +    P+ VL  +  +  L   K +D+A++ + +++     P 
Sbjct: 69  KAGNFNESLYFLRHLVNKGH-KPDVVLCTK-LIHGLFTSKTIDKAIQVMHILENHG-HPD 125

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
           L  ++  +    + N    A Q+ D M   GF+  P+++ YN +IG LC+   +D+   F
Sbjct: 126 LIAYNAIITGFCRANRIDSAYQVLDRMKNKGFS--PDIVTYNILIGSLCSRGMLDSALEF 183

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
            +Q++     P  +TY ++ E  +    + E  K   EM++   QP      + I  +  
Sbjct: 184 KNQLLKENCKPTVVTYTILIEATLLQGGIDEAMKLLDEMLEINLQPDMFTYNSIIRGMCR 243

Query: 409 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
               + A +I + I   G  P   + N LL GL N G+         +M+ R
Sbjct: 244 EGYVDRAFQIISSISSKGYAPDVITYNILLRGLLNQGKWEAGYELMSDMVAR 295


>gi|326513918|dbj|BAJ92109.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 459

 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 99/381 (25%), Positives = 161/381 (42%), Gaps = 18/381 (4%)

Query: 81  PDLVHEVLQLSYDS-PSSAVDFFRWAGRGQRLSPYA--WNLMVDVLGKNGRFEQMWNAVR 137
           PDL   V++ +  S P  A  F  W       SP A  ++ ++  L +   F  +W    
Sbjct: 77  PDLALRVIRAAAPSEPLHAARFLAWIRAKPNFSPSADHFDALLLPLARARLFTHLWTQAS 136

Query: 138 VMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
            M+  G+ LS  TF+++  SY  +   ++AV  F+ +   G  Q     N+LL A+C   
Sbjct: 137 DMRALGLPLSPATFSAVISSYGHSRLAEQAVEVFNRLPHFGCPQTTEVYNALLDALCANG 196

Query: 197 NQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
           N    A + L R+ +K V PD  +F+ L++ W   G + EA     +M  R    P  V 
Sbjct: 197 NFAG-AYKLLRRMARKGVAPDRATFSTLVDAWCASGKLREAQAFLDDMATRGFRPP--VR 253

Query: 256 AYETFLITLIRGKQVDEALKF-LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314
             +  +  L+R  +++EA  F LR+ K E   P +  F++    L    D   AV L   
Sbjct: 254 GRDLLVDGLVRAGRLEEAKAFALRITK-EGVLPDVATFNSLAQALCDAGDVEFAVGLLAD 312

Query: 315 MVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN 374
               G  + P++  Y  ++  +     ++  FR F   +  G  P    Y  I + L K 
Sbjct: 313 ASSRG--MCPDISTYKVMLPAVAKAGRIEEAFRLFYAAIEDGHRPFPSLYAAIVKALCKA 370

Query: 375 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL---ENGILPLE 431
            R  +   FF +M      P        + M +        ++  NY+L   E G  P  
Sbjct: 371 GRFADAFAFFGDMKSKGHPPNRPVYVMLVKMCVRGGR---FLDAANYLLEMSEAGFAPRA 427

Query: 432 ASANELLVGLRNLGRLSDVRR 452
            + N ++ GLR+LG+    RR
Sbjct: 428 PTFNVVVDGLRHLGKHDLARR 448


>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
          Length = 902

 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 91/352 (25%), Positives = 152/352 (43%), Gaps = 16/352 (4%)

Query: 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204
           L   TF  +    C AGK   A+     M       + V  N++++  C +  +   AL+
Sbjct: 486 LCTTTFNIMLRHLCSAGKPARALELLRQMP----RPNAVTYNTVIAGFCSR-GRVQAALD 540

Query: 205 FLN--RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI 262
            +   R +  + P+  ++  ++ GW K G V+EA K F EM+ + E  PE V+ Y   + 
Sbjct: 541 IMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVM-YNALIG 599

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL 322
                 ++D AL +   M       T+  ++  +  L      T A +L + M G G  L
Sbjct: 600 GYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKG--L 657

Query: 323 MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
            P++  YN +I   C   +V      F+ M   G     +TY  +   L K  +V E +K
Sbjct: 658 APDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDK 717

Query: 383 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 442
            F E ++   +P  +     I     +   + A EI   + +  I P + + N L+ GL 
Sbjct: 718 LFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLC 777

Query: 443 NLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMR-DIFDSLERR 493
            LGR+ + R+  +EM  R I    VT + L   +     SM+ D+ D+L  R
Sbjct: 778 LLGRVDEARKLIDEMTERGIQPDLVTYNTLISGY-----SMKGDVKDALRIR 824



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 97/394 (24%), Positives = 169/394 (42%), Gaps = 14/394 (3%)

Query: 91  SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-- 148
           S   P+ A++  R   R   ++   +N ++      GR +   + +R M+E G ++ P  
Sbjct: 500 SAGKPARALELLRQMPRPNAVT---YNTVIAGFCSRGRVQAALDIMREMRERGGIA-PNQ 555

Query: 149 -TFASIFDSYCGAGKYDEAVMSFDVMSMHG-VEQDVVAVNSLLSAICRQENQTSRALEFL 206
            T+ ++   +C  G+ DEAV  FD M   G V+ + V  N+L+   C Q  +   AL + 
Sbjct: 556 YTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQ-GKLDTALLYR 614

Query: 207 NR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
           +R V++ V     ++ +L+     +G   EA +   EM  +    P+ V  Y   +    
Sbjct: 615 DRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGK-GLAPD-VFTYNILINGHC 672

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN 325
           +   V +AL+    M       T+  ++  +  L K        +L+D  V  G  + P+
Sbjct: 673 KEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRG--IRPD 730

Query: 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 385
           L++YNA+I     + ++D  F    +M      PD +TYN +   L    RV E  K   
Sbjct: 731 LVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLID 790

Query: 386 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
           EM +   QP  +   T I+      + + A+ I N ++  G  P   + N L+ GL   G
Sbjct: 791 EMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNG 850

Query: 446 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 479
           +  D     +EM+   I   + T   L +    E
Sbjct: 851 QGDDAENMVKEMVENGITPDDSTYISLIEGLTTE 884



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 127/313 (40%), Gaps = 40/313 (12%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAG 161
           R   RG  ++   +NL+V  L  +GR  + +  V  M   G+   + T+  + + +C  G
Sbjct: 616 RMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEG 675

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221
              +A+  F+ MS  GV   VV   +L+ A+ ++         F   V++ + PD   + 
Sbjct: 676 NVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYN 735

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L+      GN++ A +  GEM E+    P+ V  Y T +  L    +VDEA K +  M 
Sbjct: 736 ALINSHSTSGNIDRAFEIMGEM-EKKRIAPDDV-TYNTLMRGLCLLGRVDEARKLIDEM- 792

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
                                  +   +Q             P+L+ YN +I       D
Sbjct: 793 -----------------------TERGIQ-------------PDLVTYNTLISGYSMKGD 816

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
           V +  R  ++M+  G  P  LTYN + + L KN +  + E    EM++N   P      +
Sbjct: 817 VKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYIS 876

Query: 402 AITMLLDADEPEI 414
            I  L   DE  I
Sbjct: 877 LIEGLTTEDERAI 889


>gi|449444228|ref|XP_004139877.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492643|ref|XP_004159059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 585

 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 139/312 (44%), Gaps = 36/312 (11%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           +++N+++D L K G++++       M + GV   + TF+++ D+ C  G   EA    + 
Sbjct: 238 FSYNIIIDELCKIGKWKEAKRLFNEMVDQGVRPDVVTFSALIDTLCKEGMVIEAKKFLET 297

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M + G+  D+    SL+   C   +  S    FL+   K  +PD  S+ +L+ G+ K  N
Sbjct: 298 MMLRGIVPDLFTFTSLIEGFCLVGDLDSAKELFLSMPSKGYEPDVISYTVLIYGYCKTFN 357

Query: 233 VEEANKTFGEMVERFEWN---------------------------------PEHVLAYET 259
           VEEA K + EM+   +W                                  P+++     
Sbjct: 358 VEEAMKLYNEMLRVGKWPDMKTFCVLLKGLFLAGKVGDAKKLFGVVKPHAVPKNLYICSV 417

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG 319
           FL  L +   + EA++    +K  N    ++ F+  +D L K      A +L++ +   G
Sbjct: 418 FLDGLCKNGCLFEAMELFNELKSYNMKLDIESFNCLIDGLCKARKLETAWELFEKLSQEG 477

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
             L P+++ Y  +I   C N  VDN    F  M  +G  P+ LTY+ +     KN ++ E
Sbjct: 478 --LQPDVVTYCIMINGFCKNGQVDNANILFQMMEENGCTPNLLTYSALLHGFYKNNKLEE 535

Query: 380 VEKFFHEMIKNE 391
           V K  H+MI+ +
Sbjct: 536 VVKLLHKMIQKD 547



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 142/320 (44%), Gaps = 22/320 (6%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+ +F  +  +      Y +    +  M + G+  +   +N L++ +C      +R  E 
Sbjct: 90  SIISFNLLLGALAKIKHYSQVFSLYKKMHLAGLSPNFFTLNILINCLC----NVNRVREG 145

Query: 206 LNRVKKIVD----PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFL 261
           L+ +  I+     PD  ++  L++G   E  + EA + F  M +   W   +V+ Y T +
Sbjct: 146 LSAMAGIMRRGYIPDVVTYTSLIKGLCMEHRISEATRLFIRMQKLGCW--PNVVTYGTLI 203

Query: 262 ITLIRGKQVDEALKFLRVM------KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
             L R   ++ ALK  + M         NC P +  ++  +D L K+     A +L++ M
Sbjct: 204 KGLCRTGNINLALKLHQEMLNGTSPYAINCKPNIFSYNIIIDELCKIGKWKEAKRLFNEM 263

Query: 316 VGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFE--CLIK 373
           V  G  + P+++ ++A+I  LC    V    +F + M+  G  PD  T+  + E  CL+ 
Sbjct: 264 VDQG--VRPDVVTFSALIDTLCKEGMVIEAKKFLETMMLRGIVPDLFTFTSLIEGFCLVG 321

Query: 374 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 433
           +  +   ++ F  M    ++P  ++    I         E A++++N +L  G  P   +
Sbjct: 322 D--LDSAKELFLSMPSKGYEPDVISYTVLIYGYCKTFNVEEAMKLYNEMLRVGKWPDMKT 379

Query: 434 ANELLVGLRNLGRLSDVRRF 453
              LL GL   G++ D ++ 
Sbjct: 380 FCVLLKGLFLAGKVGDAKKL 399


>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
          Length = 897

 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 91/352 (25%), Positives = 152/352 (43%), Gaps = 16/352 (4%)

Query: 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204
           L   TF  +    C AGK   A+     M       + V  N++++  C +  +   AL+
Sbjct: 481 LCTTTFNIMLRHLCSAGKPARALELLRQMP----RPNAVTYNTVIAGFCSR-GRVQAALD 535

Query: 205 FLN--RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI 262
            +   R +  + P+  ++  ++ GW K G V+EA K F EM+ + E  PE V+ Y   + 
Sbjct: 536 IMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVM-YNALIG 594

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL 322
                 ++D AL +   M       T+  ++  +  L      T A +L + M G G  L
Sbjct: 595 GYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKG--L 652

Query: 323 MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
            P++  YN +I   C   +V      F+ M   G     +TY  +   L K  +V E +K
Sbjct: 653 APDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDK 712

Query: 383 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 442
            F E ++   +P  +     I     +   + A EI   + +  I P + + N L+ GL 
Sbjct: 713 LFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLC 772

Query: 443 NLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMR-DIFDSLERR 493
            LGR+ + R+  +EM  R I    VT + L   +     SM+ D+ D+L  R
Sbjct: 773 LLGRVDEARKLIDEMTERGIQPDLVTYNTLISGY-----SMKGDVKDALRIR 819



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 97/394 (24%), Positives = 169/394 (42%), Gaps = 14/394 (3%)

Query: 91  SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-- 148
           S   P+ A++  R   R   ++   +N ++      GR +   + +R M+E G ++ P  
Sbjct: 495 SAGKPARALELLRQMPRPNAVT---YNTVIAGFCSRGRVQAALDIMREMRERGGIA-PNQ 550

Query: 149 -TFASIFDSYCGAGKYDEAVMSFDVMSMHG-VEQDVVAVNSLLSAICRQENQTSRALEFL 206
            T+ ++   +C  G+ DEAV  FD M   G V+ + V  N+L+   C Q  +   AL + 
Sbjct: 551 YTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQ-GKLDTALLYR 609

Query: 207 NR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
           +R V++ V     ++ +L+     +G   EA +   EM  +    P+ V  Y   +    
Sbjct: 610 DRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGK-GLAPD-VFTYNILINGHC 667

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN 325
           +   V +AL+    M       T+  ++  +  L K        +L+D  V  G  + P+
Sbjct: 668 KEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRG--IRPD 725

Query: 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 385
           L++YNA+I     + ++D  F    +M      PD +TYN +   L    RV E  K   
Sbjct: 726 LVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLID 785

Query: 386 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
           EM +   QP  +   T I+      + + A+ I N ++  G  P   + N L+ GL   G
Sbjct: 786 EMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNG 845

Query: 446 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 479
           +  D     +EM+   I   + T   L +    E
Sbjct: 846 QGDDAENMVKEMVENGITPDDSTYISLIEGLTTE 879



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 127/313 (40%), Gaps = 40/313 (12%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAG 161
           R   RG  ++   +NL+V  L  +GR  + +  V  M   G+   + T+  + + +C  G
Sbjct: 611 RMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEG 670

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221
              +A+  F+ MS  GV   VV   +L+ A+ ++         F   V++ + PD   + 
Sbjct: 671 NVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYN 730

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L+      GN++ A +  GEM E+    P+ V  Y T +  L    +VDEA K +  M 
Sbjct: 731 ALINSHSTSGNIDRAFEIMGEM-EKKRIAPDDV-TYNTLMRGLCLLGRVDEARKLIDEM- 787

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
                                  +   +Q             P+L+ YN +I       D
Sbjct: 788 -----------------------TERGIQ-------------PDLVTYNTLISGYSMKGD 811

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
           V +  R  ++M+  G  P  LTYN + + L KN +  + E    EM++N   P      +
Sbjct: 812 VKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYIS 871

Query: 402 AITMLLDADEPEI 414
            I  L   DE  I
Sbjct: 872 LIEGLTTEDERAI 884


>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
 gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
          Length = 608

 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/351 (22%), Positives = 164/351 (46%), Gaps = 7/351 (1%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y+ N++++ L +    +   + +  M + G+  +  TF ++ +  C  GK  EAV  F+ 
Sbjct: 124 YSLNVLINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNE 183

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEG 231
           M   G E +V++ N++++ +C+  N TS A++   ++++    PD  ++  +++   K+ 
Sbjct: 184 MVRRGHEPNVISYNTIINGLCKTGN-TSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDR 242

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            V +A +   EM++R    P +V  Y   +       Q++EA +  + M G +  P    
Sbjct: 243 LVNDAMEFLSEMLDR--GIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVT 300

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
            +  +D L K    + A  +++ M   G    PN+  YNA++   C    ++   + F+ 
Sbjct: 301 LTILVDGLCKEGMVSEARLVFETMTEKGVE--PNISTYNALMDGYCLQRLMNEAKKVFEI 358

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M+  G  P   +YN++     K++R+ E +    EM      P  +  +T +  L     
Sbjct: 359 MIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGR 418

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
           P+ A+ I+  +   G+LP   + + LL G    G L +  +  + M  +++
Sbjct: 419 PKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKL 469



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 83/356 (23%), Positives = 156/356 (43%), Gaps = 11/356 (3%)

Query: 98  AVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFD 155
           AV+ F     RG   +  ++N +++ L K G      +  + M+++G    + T+ +I D
Sbjct: 177 AVELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIID 236

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC--RQENQTSRALEFLNRVKKIV 213
           S C     ++A+     M   G+  +V   N ++   C   Q N+ +R   F   V + V
Sbjct: 237 SLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRL--FKEMVGRDV 294

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
            PD  +  IL++G  KEG V EA   F  M E+      ++  Y   +      + ++EA
Sbjct: 295 MPDTVTLTILVDGLCKEGMVSEARLVFETMTEK--GVEPNISTYNALMDGYCLQRLMNEA 352

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
            K   +M  + C P +  ++  ++   K      A  L   M     N  P+ + Y+ ++
Sbjct: 353 KKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALN--PDTVTYSTLM 410

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
             LC           F +M  +G  P+ +TY+++ +   K+  + E  K    M + + +
Sbjct: 411 QGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLE 470

Query: 394 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 449
           P  ++    I  +  A + E+A E+++ +  +GI P   +   ++ GL   G LSD
Sbjct: 471 PNIVHHTILIEGMFIAGKLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEG-LSD 525



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/368 (20%), Positives = 158/368 (42%), Gaps = 6/368 (1%)

Query: 96  SSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASI 153
           S AVD F+     G +     +N ++D L K+         +  M + G+  ++ T+  +
Sbjct: 210 SMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCM 269

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV 213
              +C  G+ +EA   F  M    V  D V +  L+  +C++   +   L F    +K V
Sbjct: 270 VHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGV 329

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
           +P+  ++  L++G+  +  + EA K F  M+   +     V +Y   +    + +++DEA
Sbjct: 330 EPNISTYNALMDGYCLQRLMNEAKKVFEIMIR--QGCAPGVHSYNILINGFCKSRRMDEA 387

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
              L  M  +   P    +S  +  L +      A+ ++  M   G  L+PNL+ Y+ ++
Sbjct: 388 KSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYG--LLPNLVTYSILL 445

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
              C +  +D   +    M      P+ + + ++ E +    ++   ++ F ++  +  +
Sbjct: 446 DGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIAGKLEVAKELFSKLFADGIR 505

Query: 394 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 453
           PT       I  LL     + A +++  + ++G LP   S N ++ G       S   R 
Sbjct: 506 PTIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRL 565

Query: 454 AEEMLNRR 461
            +EM+ +R
Sbjct: 566 IDEMVGKR 573



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 114/265 (43%), Gaps = 8/265 (3%)

Query: 232 NVEEANKTFGEMVERFEWNPEHVLA-YETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           ++++A  +F  MV     NP   +A +  FL +  + KQ    +     M        + 
Sbjct: 68  SIDDALASFYRMVR---MNPRPSVAEFGKFLGSFAKKKQYSTVVSLCNQMDLFGVTHNVY 124

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
             +  ++ L +LN    AV +   M  +G +  P    +NA+I  LCN   +      F+
Sbjct: 125 SLNVLINCLCRLNHVDFAVSILGKMFKLGIH--PTASTFNALINGLCNEGKIKEAVELFN 182

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
           +MV  G  P+ ++YN I   L K          F +M +N  +P  +   T I  L    
Sbjct: 183 EMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDR 242

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 470
               A+E  + +L+ GI P   + N ++ G   LG+L++  R  +EM+ R ++   VT+ 
Sbjct: 243 LVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLT 302

Query: 471 KLKKAFYNES--RSMRDIFDSLERR 493
            L      E      R +F+++  +
Sbjct: 303 ILVDGLCKEGMVSEARLVFETMTEK 327



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 116/305 (38%), Gaps = 40/305 (13%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F    GR          ++VD L K G   +       M E GV  ++ T+ ++ D YC 
Sbjct: 286 FKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCL 345

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
               +EA   F++M   G    V + N L++  C+                K ++PD  +
Sbjct: 346 QRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVT 405

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           ++ L++G  + G  +EA   F EM   +   P +++ Y   L    +   +DEALK L+ 
Sbjct: 406 YSTLMQGLCQFGRPKEALNIFKEMCS-YGLLP-NLVTYSILLDGFCKHGHLDEALKLLKS 463

Query: 280 MK-----------------------------------GENCFPTLKFFSNALDILVKLND 304
           M+                                    +   PT++ ++  +  L+K   
Sbjct: 464 MQEKKLEPNIVHHTILIEGMFIAGKLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGL 523

Query: 305 STHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTY 364
           S  A  L+  M   GF  +PN   YN +I     N D     R  D+MV      +  T+
Sbjct: 524 SDEAYDLFRKMEDDGF--LPNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGKRFSANLSTF 581

Query: 365 NMIFE 369
            M+ +
Sbjct: 582 QMLLD 586



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/236 (21%), Positives = 108/236 (45%), Gaps = 7/236 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           +++N++++   K+ R ++  + +  M    +     T++++    C  G+  EA+  F  
Sbjct: 369 HSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKE 428

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEG 231
           M  +G+  ++V  + LL   C+       AL+ L  ++ K ++P+     IL+EG    G
Sbjct: 429 MCSYGLLPNLVTYSILLDGFCKH-GHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIAG 487

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            +E A + F ++    +     +  Y   +  L++    DEA    R M+ +   P    
Sbjct: 488 KLEVAKELFSKLFA--DGIRPTIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCS 545

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFR 347
           ++  +   ++  DS+ A++L D MVG  F+   NL  +  ++ L   ++ +    R
Sbjct: 546 YNVMIQGFLQNQDSSTAIRLIDEMVGKRFS--ANLSTFQMLLDLESQDEIISQFMR 599


>gi|356551209|ref|XP_003543970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 687

 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 105/469 (22%), Positives = 184/469 (39%), Gaps = 91/469 (19%)

Query: 78  IPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQ---- 131
           +  P L+  VL    + P  A+ FFRWA R  G + S  ++++++D+L +NG        
Sbjct: 44  VAEPKLLVRVLNTVRNRPVVALRFFRWAERQTGFKRSEISYSVILDILARNGLMRSAYCV 103

Query: 132 MWNAVRVMKEDGVL--------SLPTFASIFD----SYCGAGKYDEAVMSF--------- 170
           M   V V  E+GV+        S+P+   I D     Y      ++ ++ F         
Sbjct: 104 MEKVVSVKMENGVIDVVSSSEVSMPSVKLILDLLLWIYVKKSLLEKCLLVFYKMVSKGLL 163

Query: 171 ---------------------------DVMSMHGVEQDVVAVNSLLSAICRQENQTSRAL 203
                                      +VM   G+   VV  N++L + C++      AL
Sbjct: 164 PDVKNCNRVLRLLRDRDNNIDVAREVYNVMVECGICPTVVTYNTMLDSFCKK-GMVQEAL 222

Query: 204 EFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEM------VERFEWNP----- 251
           + L +++ +   P+  ++ +L+ G    G +E+A +   +M      V  + ++P     
Sbjct: 223 QLLFQMQAMGCSPNDVTYNVLVNGLSHSGEMEQAKELIQDMLRLGLEVSVYTYDPLIRGY 282

Query: 252 ----------------------EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
                                   V+ Y T +  L +  +V +A K L VM  +N  P L
Sbjct: 283 CEKGQIEEASRLGEEMLSRGAVPTVVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDL 342

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
             ++  +    +L +   A  L+  +     +L P+++ YN +I  LC   D+D   R  
Sbjct: 343 VSYNTLIYGYTRLGNIGEAFLLFAELR--YRSLAPSVVTYNTLIDGLCRLGDLDVAMRLK 400

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 409
           D+M+ HG  PD  T+        K   +   ++ F EM+    QP      T I   L  
Sbjct: 401 DEMIKHGPDPDVFTFTTFVRGFCKMGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKL 460

Query: 410 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
            +P  A  +   +L  G  P   + N  + GL  LG L +     ++ML
Sbjct: 461 GDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKML 509



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 93/415 (22%), Positives = 165/415 (39%), Gaps = 48/415 (11%)

Query: 83  LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED 142
           +V E LQL           F+    G   +   +N++V+ L  +G  EQ    ++ M   
Sbjct: 217 MVQEALQL----------LFQMQAMGCSPNDVTYNVLVNGLSHSGEMEQAKELIQDMLRL 266

Query: 143 GV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSR 201
           G+ +S+ T+  +   YC  G+ +EA    + M   G    VV  N+++  +C+   + S 
Sbjct: 267 GLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTIMYGLCKW-GRVSD 325

Query: 202 ALEFLN-RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF 260
           A + L+  V K + PD  S+  L+ G+ + GN+ EA   F E+  R+      V+ Y T 
Sbjct: 326 ARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAEL--RYRSLAPSVVTYNTL 383

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF 320
           +  L R   +D A++    M      P +  F+  +    K+ +   A +L+D M+  G 
Sbjct: 384 IDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVRGFCKMGNLPMAKELFDEMLNRGL 443

Query: 321 ---------------------------------NLMPNLIMYNAVIGLLCNNDDVDNVFR 347
                                               P+LI YN  I  L    ++     
Sbjct: 444 QPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASE 503

Query: 348 FFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 407
              +M+++G  PD +TY  I    +    + +    F EM+     P+ +     I    
Sbjct: 504 LVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARALFLEMLSKGIFPSVVTYTVLIHSYA 563

Query: 408 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
                ++AI  +  + E G+ P   + N L+ GL  + ++     F  EM  + I
Sbjct: 564 VRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYNFFAEMQAKGI 618



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 82/357 (22%), Positives = 144/357 (40%), Gaps = 5/357 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG   +   +N ++  L K GR       + VM    ++  L ++ ++   Y   G   E
Sbjct: 301 RGAVPTVVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGE 360

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A + F  +    +   VV  N+L+  +CR  +           +K   DPD  +F   + 
Sbjct: 361 AFLLFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVR 420

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+ K GN+  A + F EM+ R    P+   AY T ++  ++     +A      M     
Sbjct: 421 GFCKMGNLPMAKELFDEMLNR-GLQPDR-FAYITRIVGELKLGDPSKAFGMQEEMLARGF 478

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P L  ++  +D L KL +   A +L   M+  G  L+P+ + Y ++I        +   
Sbjct: 479 PPDLITYNVFIDGLHKLGNLKEASELVKKMLYNG--LVPDHVTYTSIIHAHLMAGHLRKA 536

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
              F +M+  G FP  +TY ++        R+      F EM +    P  +     I  
Sbjct: 537 RALFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALING 596

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
           L    + + A   +  +   GI P + +   L+    NLG   +  R  ++ML+R I
Sbjct: 597 LCKVRKMDQAYNFFAEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREI 653



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 118/287 (41%), Gaps = 45/287 (15%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN-QTSRAL- 203
           S+ T+ ++ D  C  G  D A+   D M  HG + DV    + +   C+  N   ++ L 
Sbjct: 376 SVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVRGFCKMGNLPMAKELF 435

Query: 204 -EFLNR---------VKKIVD-----------------------PDGDSFAILLEGWEKE 230
            E LNR         + +IV                        PD  ++ + ++G  K 
Sbjct: 436 DEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKL 495

Query: 231 GNVEEANKTFGEMVERFEWN---PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
           GN++EA+    E+V++  +N   P+HV  Y + +   +    + +A      M  +  FP
Sbjct: 496 GNLKEAS----ELVKKMLYNGLVPDHV-TYTSIIHAHLMAGHLRKARALFLEMLSKGIFP 550

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFR 347
           ++  ++  +           A+  +  M   G +  PN+I YNA+I  LC    +D  + 
Sbjct: 551 SVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVH--PNVITYNALINGLCKVRKMDQAYN 608

Query: 348 FFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
           FF +M   G  P+  TY ++           E  + + +M+  E QP
Sbjct: 609 FFAEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREIQP 655


>gi|414865374|tpg|DAA43931.1| TPA: hypothetical protein ZEAMMB73_168023 [Zea mays]
          Length = 793

 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 113/484 (23%), Positives = 207/484 (42%), Gaps = 29/484 (5%)

Query: 33  HRPTRPRFPTH-LDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLS 91
           HR     FPT  L    +S+ AR+    L H ++  + S      + P+    + VL   
Sbjct: 126 HRHLLASFPTSALADAALSTYARLR---LPHLAAQLLHSFRRRGCVRPSLQAANAVLSAL 182

Query: 92  YDSPSSA----VDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL 145
             SPS++    +D F  +    RL P  Y +NL+V      G      + +  M+  G+ 
Sbjct: 183 ARSPSTSPQASLDAFH-SLIALRLHPNHYTFNLLVHTHCSKGTLADALSTLSKMQGFGLS 241

Query: 146 -SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE--NQTSRA 202
               T+ ++ +++C  G   EA      M   G+       N+L+SA  R     Q +  
Sbjct: 242 PDAVTYNTLLNAHCRKGMLGEARTLLARMKKEGIVPTRATYNTLVSAYARLGWIKQATDV 301

Query: 203 LEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI 262
           +E +       +PD  ++ +L  G  + G V+EA K   EM +    +P+ V+ Y T + 
Sbjct: 302 VEAMTAFG--FEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEQLGIVSPD-VVTYNTLVD 358

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL 322
              + ++  +AL  L  M+ +    +L   +  +  L +      A+   ++M   G  L
Sbjct: 359 ACFKCQRSSDALNLLEEMREKGVKSSLVTHNIIVKGLCREGQLEEALGRLEMMTEEG--L 416

Query: 323 MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
            P++I YN +I   C   +V   F   D+MV  G   D+ T N +   L K KR  E E+
Sbjct: 417 TPDVITYNTLIDASCKAGNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEE 476

Query: 383 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 442
                 +  + P  ++  T +       +PE A+ +W+ +++  + P  ++ N L+ GL 
Sbjct: 477 LLRAPPQRGFVPDEVSYGTVMAAYFKEYKPEPALCLWDEMIKRKLTPSISTYNTLIKGLS 536

Query: 443 NLGRLSDVRRFAEEMLNRRIL----IYEVTMHK------LKKAFYNESRSMRDIFDSLER 492
            +G+L++      E++   ++     Y + +H       L+KAF   ++ + + F     
Sbjct: 537 TMGKLTEAIDKLNELMEMGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMVENSFKPDVV 596

Query: 493 RCKT 496
            C T
Sbjct: 597 TCNT 600



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/344 (23%), Positives = 153/344 (44%), Gaps = 7/344 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N +VD   K  R     N +  M+E GV S L T   I    C  G+ +EA+   ++M+
Sbjct: 353 YNTLVDACFKCQRSSDALNLLEEMREKGVKSSLVTHNIIVKGLCREGQLEEALGRLEMMT 412

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNV 233
             G+  DV+  N+L+ A C+  N  ++A   ++  V+  +  D  +   LL    KE   
Sbjct: 413 EEGLTPDVITYNTLIDASCKAGN-VAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRY 471

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           EEA +      +R  + P+ V +Y T +    +  + + AL     M      P++  ++
Sbjct: 472 EEAEELLRAPPQR-GFVPDEV-SYGTVMAAYFKEYKPEPALCLWDEMIKRKLTPSISTYN 529

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +  L  +   T A+   + ++ +G  L+P+   YN +I   C   D++  F+F ++MV
Sbjct: 530 TLIKGLSTMGKLTEAIDKLNELMEMG--LVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMV 587

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
            +   PD +T N +   L    R+ +  K F   ++   +   +   T I  L   ++ +
Sbjct: 588 ENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFESWVEKGKKVDVITYNTLIQALCKDNDVD 647

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
            A+  +  +   G+ P   + N LL  L   GR  + ++   ++
Sbjct: 648 TALRFFADMEVRGLQPDVFTYNVLLSALSEAGRSVEAQKMLHKL 691



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 146/324 (45%), Gaps = 7/324 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G + S    N++V  L + G+ E+    + +M E+G+   + T+ ++ D+ C AG   +
Sbjct: 379 KGVKSSLVTHNIIVKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTLIDASCKAGNVAK 438

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILL 224
           A +  D M   G++ D   +N+LL  +C+ E +   A E L    ++   PD  S+  ++
Sbjct: 439 AFVLMDEMVRSGLKMDTFTLNTLLYNLCK-EKRYEEAEELLRAPPQRGFVPDEVSYGTVM 497

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
             + KE   E A   + EM++R +  P  +  Y T +  L    ++ EA+  L  +    
Sbjct: 498 AAYFKEYKPEPALCLWDEMIKR-KLTPS-ISTYNTLIKGLSTMGKLTEAIDKLNELMEMG 555

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
             P    ++  +    K  D   A Q  + MV   F   P+++  N ++  LC    ++ 
Sbjct: 556 LVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMVENSFK--PDVVTCNTLMNGLCLYGRLEK 613

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
             + F+  V  G   D +TYN + + L K+  V    +FF +M     QP        ++
Sbjct: 614 AMKLFESWVEKGKKVDVITYNTLIQALCKDNDVDTALRFFADMEVRGLQPDVFTYNVLLS 673

Query: 405 MLLDADEPEIAIEIWNYILENGIL 428
            L +A     A ++ + + E+G L
Sbjct: 674 ALSEAGRSVEAQKMLHKLNESGKL 697



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 86/375 (22%), Positives = 162/375 (43%), Gaps = 24/375 (6%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS--LPTFASIFDSYCGAGKYDEAVMSFD 171
           + +N++   L + G+ ++ +     M++ G++S  + T+ ++ D+     +  +A+   +
Sbjct: 315 WTYNVLAAGLCQAGKVDEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALNLLE 374

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKE 230
            M   GV+  +V  N ++  +CR E Q   AL  L  + ++ + PD  ++  L++   K 
Sbjct: 375 EMREKGVKSSLVTHNIIVKGLCR-EGQLEEALGRLEMMTEEGLTPDVITYNTLIDASCKA 433

Query: 231 GNVEEANKTFGEMV------ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           GNV +A     EMV      + F  N        T L  L + K+ +EA + LR      
Sbjct: 434 GNVAKAFVLMDEMVRSGLKMDTFTLN--------TLLYNLCKEKRYEEAEELLRAPPQRG 485

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
             P    +   +    K      A+ LWD M  I   L P++  YN +I  L     +  
Sbjct: 486 FVPDEVSYGTVMAAYFKEYKPEPALCLWDEM--IKRKLTPSISTYNTLIKGLSTMGKLTE 543

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
                ++++  G  PD  TYN+I     K   + +  +F ++M++N ++P  + C T + 
Sbjct: 544 AIDKLNELMEMGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMVENSFKPDVVTCNTLMN 603

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNR 460
            L      E A++++   +E G      + N L+  L     +    RF  +M    L  
Sbjct: 604 GLCLYGRLEKAMKLFESWVEKGKKVDVITYNTLIQALCKDNDVDTALRFFADMEVRGLQP 663

Query: 461 RILIYEVTMHKLKKA 475
            +  Y V +  L +A
Sbjct: 664 DVFTYNVLLSALSEA 678



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 82/408 (20%), Positives = 159/408 (38%), Gaps = 41/408 (10%)

Query: 107 RGQRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           +G  LSP A  +N +++   + G   +    +  MK++G++ +  T+ ++  +Y   G  
Sbjct: 236 QGFGLSPDAVTYNTLLNAHCRKGMLGEARTLLARMKKEGIVPTRATYNTLVSAYARLGWI 295

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK--IVDPDGDSFA 221
            +A    + M+  G E D+   N L + +C Q  +   A +  + +++  IV PD  ++ 
Sbjct: 296 KQATDVVEAMTAFGFEPDLWTYNVLAAGLC-QAGKVDEAFKLKDEMEQLGIVSPDVVTYN 354

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L++   K     +A     EM E+       ++ +   +  L R  Q++EAL  L +M 
Sbjct: 355 TLVDACFKCQRSSDALNLLEEMREK--GVKSSLVTHNIIVKGLCREGQLEEALGRLEMMT 412

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL------------------- 322
            E   P +  ++  +D   K  +   A  L D MV  G  +                   
Sbjct: 413 EEGLTPDVITYNTLIDASCKAGNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYE 472

Query: 323 --------------MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIF 368
                         +P+ + Y  V+         +     +D+M+     P   TYN + 
Sbjct: 473 EAEELLRAPPQRGFVPDEVSYGTVMAAYFKEYKPEPALCLWDEMIKRKLTPSISTYNTLI 532

Query: 369 ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 428
           + L    ++ E     +E+++    P        I       + E A +  N ++EN   
Sbjct: 533 KGLSTMGKLTEAIDKLNELMEMGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMVENSFK 592

Query: 429 PLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
           P   + N L+ GL   GRL    +  E  + +   +  +T + L +A 
Sbjct: 593 PDVVTCNTLMNGLCLYGRLEKAMKLFESWVEKGKKVDVITYNTLIQAL 640



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 61/274 (22%), Positives = 120/274 (43%), Gaps = 12/274 (4%)

Query: 109 QRLSPY--AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           ++L+P    +N ++  L   G+  +  + +  + E G++    T+  I  +YC  G  ++
Sbjct: 519 RKLTPSISTYNTLIKGLSTMGKLTEAIDKLNELMEMGLVPDDTTYNIIIHAYCKEGDLEK 578

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAIC---RQENQTSRALEFLNRVKKIVDPDGDSFAI 222
           A    + M  +  + DVV  N+L++ +C   R E        ++ + KK+   D  ++  
Sbjct: 579 AFQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFESWVEKGKKV---DVITYNT 635

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L++   K+ +V+ A + F +M  R    P+ V  Y   L  L    +  EA K L  +  
Sbjct: 636 LIQALCKDNDVDTALRFFADMEVR-GLQPD-VFTYNVLLSALSEAGRSVEAQKMLHKL-N 692

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
           E+     +FF  ++   V+  ++    ++   +  +G     +   YN  I  LC    +
Sbjct: 693 ESGKLYGRFFYPSIKSSVEAVETGKDPEVKSDIESVGNTQGDDQESYNKYIKELCIGGQL 752

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
                  D+M+  G   D+ TY  + E LIK ++
Sbjct: 753 KEAKAVLDEMMQKGMSVDNSTYITLMEGLIKRQK 786


>gi|357121285|ref|XP_003562351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 624

 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 86/392 (21%), Positives = 169/392 (43%), Gaps = 17/392 (4%)

Query: 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFD 171
           P  ++++++   ++G +      +  +   G  L       + ++ C  G  DE +    
Sbjct: 151 PPMYHVIIESACRSGGYSSALRVLEALHAKGSTLDTGNCNLVINAICDQGCVDEGLEMLR 210

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQE---------NQTSRALEFLNRVKK-IVDPDGDSFA 221
            + + G E D+V+ N++L  +C  +         ++  +  E L+++ +    PD   +A
Sbjct: 211 KLPLFGCEADIVSYNAVLKGLCAAKRWGDVEELMDEMVKVHEALSQMAQHGCTPDIRMYA 270

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            +++G  KEG+ E AN+    M   +   P +V+ Y T L  +    + ++A + L  M 
Sbjct: 271 TIIDGICKEGHHEVANEILSRM-PSYGLKP-NVVCYNTVLKGICSADRWEKAEELLTEMY 328

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
            +NC      F+  +D   +       ++L + M+  G   MP++I Y  VI   C    
Sbjct: 329 QKNCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHG--CMPDVITYTTVINGFCKEGL 386

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
           +D        M   G  P++++Y ++ + L   +R  + E+    MI+    P P+   T
Sbjct: 387 IDEAVMLLKNMPSCGCKPNTISYTIVLKGLCSTERWVDAEELMSRMIQQGCLPNPVTFNT 446

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461
            I  L      E AIE+   +L NG  P   S + ++ GL   G+  +       M+N+ 
Sbjct: 447 IINFLCKKGLVEQAIELLKQMLVNGCNPDLISYSTVIDGLGKAGKTEEALELLNVMINKG 506

Query: 462 ILIYEVTMHKLKKAFYNESR--SMRDIFDSLE 491
           I    +T   +  A   E R   +  +FD+++
Sbjct: 507 ITPNVITYSSMAFALAREGRIDKVIQMFDNIQ 538



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 148/348 (42%), Gaps = 41/348 (11%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           +A+I D  C  G ++ A      M  +G++ +VV  N++L  IC   ++  +A E L  +
Sbjct: 269 YATIIDGICKEGHHEVANEILSRMPSYGLKPNVVCYNTVLKGIC-SADRWEKAEELLTEM 327

Query: 210 KKIVDP-DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
            +   P D  +F IL++ + + G V+   +   +M+E     P+ V+ Y T +    +  
Sbjct: 328 YQKNCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEH-GCMPD-VITYTTVINGFCKEG 385

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
            +DEA+  L+ M    C P    ++  L  L        A +L   M+  G   +PN + 
Sbjct: 386 LIDEAVMLLKNMPSCGCKPNTISYTIVLKGLCSTERWVDAEELMSRMIQQG--CLPNPVT 443

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           +N +I  LC    V+       QM+ +G  PD ++Y+ + + L K  +  E  +  + MI
Sbjct: 444 FNTIINFLCKKGLVEQAIELLKQMLVNGCNPDLISYSTVIDGLGKAGKTEEALELLNVMI 503

Query: 389 KNEWQPTPLNCAT-----------------------------------AITMLLDADEPE 413
                P  +  ++                                    I+ L    E +
Sbjct: 504 NKGITPNVITYSSMAFALAREGRIDKVIQMFDNIQDATIRSDAVLYNAVISSLCKRRETD 563

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461
           +AI+   Y++ NG +P E++   L+ GL + G L + +    E+ +RR
Sbjct: 564 LAIDFLAYMVSNGCMPNESTYTALIKGLASEGLLCEAQDLLSELCSRR 611



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 131/274 (47%), Gaps = 7/274 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N++VD   +NG  +++   +  M E G +  + T+ ++ + +C  G  DEAVM    M 
Sbjct: 339 FNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKNMP 398

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNV 233
             G + + ++   +L  +C  E     A E ++R +++   P+  +F  ++    K+G V
Sbjct: 399 SCGCKPNTISYTIVLKGLCSTERWVD-AEELMSRMIQQGCLPNPVTFNTIINFLCKKGLV 457

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           E+A +   +M+     NP+ +++Y T +  L +  + +EAL+ L VM  +   P +  +S
Sbjct: 458 EQAIELLKQMLVN-GCNPD-LISYSTVIDGLGKAGKTEEALELLNVMINKGITPNVITYS 515

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
           +    L +       +Q++D +      +  + ++YNAVI  LC   + D    F   MV
Sbjct: 516 SMAFALAREGRIDKVIQMFDNIQDA--TIRSDAVLYNAVISSLCKRRETDLAIDFLAYMV 573

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            +G  P+  TY  + + L     + E +    E+
Sbjct: 574 SNGCMPNESTYTALIKGLASEGLLCEAQDLLSEL 607


>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
          Length = 746

 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 143/326 (43%), Gaps = 10/326 (3%)

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK 229
           +  M   G++ DVV  N+L+ A+CR     +  L         V PD  +F  L++G+ +
Sbjct: 173 YSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFVE 232

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
           EG+++ A +    M+E    +P  V      +    +  +V++AL +++        P  
Sbjct: 233 EGSIKAALRVKARMLE-MGCSPTKV-TVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQ 290

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
             ++  ++ L +     HA+++ D+MV  G +  P++  YN V+  LC N  ++      
Sbjct: 291 ITYNTFVNGLCQNGHVGHALKVMDVMVQEGHD--PDVFTYNIVVNCLCKNGQLEEAKGIL 348

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 409
           +QMV  G  PD  T+N +   L    R+ E      ++      P        I  L   
Sbjct: 349 NQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKV 408

Query: 410 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN----RRILIY 465
            +P++A+ ++  +  +G  P E + N L+  L +LG+L       +EM +    R  + Y
Sbjct: 409 GDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTY 468

Query: 466 EVTMHKLKKAFYNESRSMRDIFDSLE 491
              +  L K    E     ++FD ++
Sbjct: 469 NTIIDGLCKKMRIE--EAEEVFDQMD 492



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 145/332 (43%), Gaps = 37/332 (11%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN- 207
           T   + + YC  G+ ++A+        +G E D +  N+ ++ +C Q      AL+ ++ 
Sbjct: 257 TVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLC-QNGHVGHALKVMDV 315

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            V++  DPD  ++ I++    K G +EEA     +MVER    P+ +  + T ++ L  G
Sbjct: 316 MVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVER-GCLPD-ITTFNTLIVALCSG 373

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM------------ 315
            +++EAL   R +  +   P +  F+  ++ L K+ D   A++L++ M            
Sbjct: 374 NRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTY 433

Query: 316 ------------VGIGFNLMPNL---------IMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
                       +G   +L+  +         + YN +I  LC    ++     FDQM  
Sbjct: 434 NTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDL 493

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 414
            G   +++T+N + + L K+KR+ +  +   +MI    QP  +   + +T      + + 
Sbjct: 494 QGISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDIKK 553

Query: 415 AIEIWNYILENGILPLEASANELLVGLRNLGR 446
           A +I   +  NG      +   L+ GL   GR
Sbjct: 554 AADILQTMTANGFEVDVVTYGTLINGLCKAGR 585



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 82/344 (23%), Positives = 149/344 (43%), Gaps = 7/344 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N  V+ L +NG        + VM ++G    + T+  + +  C  G+ +EA    + M 
Sbjct: 293 YNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMV 352

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNV 233
             G   D+   N+L+ A+C   N+   AL+   +V  K + PD  +F IL+    K G+ 
Sbjct: 353 ERGCLPDITTFNTLIVALC-SGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDP 411

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           + A + F EM +     P+ V  Y T +  L    ++ +AL  L+ M+   C  +   ++
Sbjct: 412 QLALRLFEEM-KSSGCTPDEV-TYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYN 469

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +D L K      A +++D M   G +   N I +N +I  LC +  +D+  +   QM+
Sbjct: 470 TIIDGLCKKMRIEEAEEVFDQMDLQGIS--RNAITFNTLIDGLCKDKRIDDANQLISQMI 527

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G  P+++TYN I     K   + +       M  N ++   +   T I  L  A   +
Sbjct: 528 SEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGRTQ 587

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           +A+++   +   G+     + N ++  L       D      EM
Sbjct: 588 VALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTRDAMNLFREM 631



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 143/350 (40%), Gaps = 8/350 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +N++V+ L KNG+ E+    +  M E G L  + TF ++  + C   + +EA+     
Sbjct: 326 FTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQ 385

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEG 231
           +++ G+  DV   N L++A+C+       AL     +K     PD  ++  L++     G
Sbjct: 386 VTLKGLSPDVYTFNILINALCKV-GDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLG 444

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            + +A     EM       P   + Y T +  L +  +++EA +    M  +        
Sbjct: 445 KLGKALDLLKEM--ESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAIT 502

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           F+  +D L K      A QL   M+  G  L PN I YN+++   C   D+         
Sbjct: 503 FNTLIDGLCKDKRIDDANQLISQMISEG--LQPNNITYNSILTHYCKQGDIKKAADILQT 560

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M  +G   D +TY  +   L K  R     K    M     + TP      I  L   + 
Sbjct: 561 MTANGFEVDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNN 620

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGL-RNLGRLSDVRRFAEEMLNR 460
              A+ ++  + E G  P   +   +  GL R  G + +   F  EM+++
Sbjct: 621 TRDAMNLFREMTEVGEPPDAFTYKIVFRGLCRGGGSIREAFDFLLEMVDK 670



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 84/377 (22%), Positives = 157/377 (41%), Gaps = 9/377 (2%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G +     +N +++VL +  + + +      M E G+   + TF ++  + C A +   A
Sbjct: 145 GIQADTVVYNHLLNVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTA 204

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLE 225
           V+  + MS  GV  D     +L+     +E     AL    R+ ++   P   +  +L+ 
Sbjct: 205 VLMLEEMSSSGVAPDETTFTTLMQGFV-EEGSIKAALRVKARMLEMGCSPTKVTVNVLIN 263

Query: 226 GWEKEGNVEEA-NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           G+ K G VE+A      E+   FE  P+ +  Y TF+  L +   V  ALK + VM  E 
Sbjct: 264 GYCKLGRVEDALGYIQQEIANGFE--PDQI-TYNTFVNGLCQNGHVGHALKVMDVMVQEG 320

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
             P +  ++  ++ L K      A  + + MV  G   +P++  +N +I  LC+ + ++ 
Sbjct: 321 HDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERG--CLPDITTFNTLIVALCSGNRLEE 378

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
                 Q+   G  PD  T+N++   L K        + F EM  +   P  +   T I 
Sbjct: 379 ALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLID 438

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 464
            L    +   A+++   +   G      + N ++ GL    R+ +     ++M  + I  
Sbjct: 439 NLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISR 498

Query: 465 YEVTMHKLKKAFYNESR 481
             +T + L      + R
Sbjct: 499 NAITFNTLIDGLCKDKR 515


>gi|414887392|tpg|DAA63406.1| TPA: hypothetical protein ZEAMMB73_124662 [Zea mays]
          Length = 795

 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 159/370 (42%), Gaps = 8/370 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAG-KYDEAVMSFDV 172
           A+  +V    + GRF       + M + GV  +L T+  +F +Y      + E V   D 
Sbjct: 186 AYTALVSAFSRAGRFRDAVAVFQRMVDGGVQPALVTYNVVFHAYSKMSVPWKEVVALVDS 245

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEG 231
           M   G+E+D    N+L+S  CR+      A +  + +K    +PD  +F  LL+ + K  
Sbjct: 246 MKEDGIERDRYTYNTLISC-CRRRGLHREAAQVFDEMKAAGFEPDKVTFNSLLDVYGKAR 304

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
             EEA      M E     P  V+ Y + +   ++   ++EAL+  + M+     P +  
Sbjct: 305 KHEEAIGVLKRM-ENAGCTPS-VVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVT 362

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           ++  +  L ++     A+  +  MV  G +  PNL  YNA+I L         +   FD 
Sbjct: 363 YTTLISGLDRVGKIDAALATYSEMVRNGCS--PNLCTYNALIKLHGVRGKFTEMMAVFDD 420

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           +   G  PD +T+N +     +N    EV   F EM K  + P      + I+       
Sbjct: 421 LRSAGYVPDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGL 480

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK 471
            + A+EI+  ++E GI P  ++ N +L  L   GR     +   EM++R     E++   
Sbjct: 481 FDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMVDRDCKPDELSYSS 540

Query: 472 LKKAFYNESR 481
           L  A+ N  +
Sbjct: 541 LLHAYANAKK 550



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 72/302 (23%), Positives = 129/302 (42%), Gaps = 11/302 (3%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N ++    + G   +       MK  G      TF S+ D Y  A K++EA+     
Sbjct: 256 YTYNTLISCCRRRGLHREAAQVFDEMKAAGFEPDKVTFNSLLDVYGKARKHEEAIGVLKR 315

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEG 231
           M   G    VV  NSL+SA  + +     ALE    ++ + + PD  ++  L+ G ++ G
Sbjct: 316 MENAGCTPSVVTYNSLISAYVK-DGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRVG 374

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITL--IRGKQVDEALKFLRVMKGENCFPTL 289
            ++ A  T+ EMV R   +P   L     LI L  +RGK   E +     ++     P +
Sbjct: 375 KIDAALATYSEMV-RNGCSPN--LCTYNALIKLHGVRGK-FTEMMAVFDDLRSAGYVPDV 430

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
             ++  L +  +    +    ++  M   G+  +P    Y ++I         D     +
Sbjct: 431 VTWNTLLSVFGQNGLDSEVSGVFKEMKKAGY--IPERDTYVSLISSYSRCGLFDQAMEIY 488

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 409
            +M+  G +PD  TYN +   L +  R  + EK F EM+  + +P  L+ ++ +    +A
Sbjct: 489 KRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMVDRDCKPDELSYSSLLHAYANA 548

Query: 410 DE 411
            +
Sbjct: 549 KK 550



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 73/372 (19%), Positives = 139/372 (37%), Gaps = 71/372 (19%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           WN ++ V G+NG   ++    + MK+ G +    T+ S+  SY   G +D+A+  +  M 
Sbjct: 433 WNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMI 492

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G+  D+   N++LSA+ R          F   V +   PD  S++ LL  +     ++
Sbjct: 493 EAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMVDRDCKPDELSYSSLLHAYANAKKLD 552

Query: 235 E----ANKTFGEMVERFEWN--------------PEHVLAYETF--------------LI 262
           +    +   + E +ER  W               PE   A++                ++
Sbjct: 553 KMKTLSEDIYAERIERHNWLVKTLVLVNNKVNNLPETEKAFQELRRRRCSLDINVLNAMV 612

Query: 263 TLI-RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFN 321
           ++  + K V +  + L +M   +   +   +++ + +  +L D      +   +   G  
Sbjct: 613 SIYGKNKMVKKVEEVLSLMMENSINHSAATYNSLMHMYSRLGDCEKCESILTEIKSSG-- 670

Query: 322 LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 381
           + P+   YN VI        +    R F +M   G  PD +TYN+  +  + N    E  
Sbjct: 671 MRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIFIKSYVANIMFEE-- 728

Query: 382 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 441
                                            AI++  Y++  G  P E + N +L G 
Sbjct: 729 ---------------------------------AIDLVRYLVTQGCRPNERTFNSILQGY 755

Query: 442 RNLGRLSDVRRF 453
              GR+ + + F
Sbjct: 756 SRHGRMVEAKSF 767


>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic [Vitis vinifera]
 gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
          Length = 1113

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 162/354 (45%), Gaps = 9/354 (2%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G R + Y + + + +LG+ G+ ++ +  ++ M + G    + T+  + D+ C AGK + A
Sbjct: 257 GLRPNIYTFTICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNA 316

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLE 225
              F  M     + D V   +LL              EF + ++     PD  +F IL++
Sbjct: 317 KELFLKMKASSHKPDRVTYITLLDKF-SDHGDLDAIKEFWSEMEADGYLPDVVTFTILID 375

Query: 226 GWEKEGNVEEANKTFGEM-VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
              K G V+EA   FG + V + +    ++  Y T +  L+R  ++DEAL+    M+   
Sbjct: 376 ALCKVGKVDEA---FGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALELFNSMESLG 432

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
              T   +   +D   K  +S  A++ ++ M   G  ++PN++  NA +  L     ++ 
Sbjct: 433 LETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNG--IVPNIVACNASLYSLAEQGRLEE 490

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
              FF+ +   G  PD++TYN++  C  K  RV +  K   EM +N   P  +   + I 
Sbjct: 491 AKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLID 550

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
            L  AD  + A +++  + E  + P   + N LL GL   GR+ +     + M+
Sbjct: 551 TLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMI 604



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 92/392 (23%), Positives = 178/392 (45%), Gaps = 46/392 (11%)

Query: 110 RLSP--YAWNLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSYCGAGKYDEA 166
           +L+P    +N ++  LGK GR ++     + M  +D   +  +F ++ D  C  G+ D A
Sbjct: 572 KLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIADDCPPNTISFNTLLDCLCKNGEVDLA 631

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
           +     M+      DV+  N+++  + + EN+ + A    +++KK++ PD  +   LL G
Sbjct: 632 LKMLFRMTEMNCFPDVLTYNTVIYGLIK-ENRVNYAFWLFHQMKKVIYPDYVTLCTLLPG 690

Query: 227 WEKEGNVEEANKTFGEMVERFE-------WN------------PEHVLAYETF------- 260
             K+G +E+A +   E V           W              + +L  E+        
Sbjct: 691 VIKDGRIEDAFRVAKEFVHHVGDHADGSFWEDLMGGILIEAEIGQSILFAESLVCNTICE 750

Query: 261 ----LITLIR-----GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
               LI L++     GK VD    FL++ K     P+L+ +++ +D L+K   +  A  L
Sbjct: 751 DDSVLIPLVKFLCKHGKAVDAYNVFLKLTKSFCITPSLEAYNSLIDGLLKARLTEMAWGL 810

Query: 312 WDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECL 371
           +  M   G    P++  YN  +  L  +  +  +F  +++M+F G  P+++T+N++   L
Sbjct: 811 FYKMKNAGCT--PDVFTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFGL 868

Query: 372 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 431
           +K+  + +    +++++  ++ PTP      I  LL     E A + +  +L+ G +P  
Sbjct: 869 VKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNC 928

Query: 432 ASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
              N L+ G    G+  DV    E  L RR++
Sbjct: 929 PLYNILMNG---FGKQGDVETACE--LFRRMV 955



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 133/317 (41%), Gaps = 7/317 (2%)

Query: 115  AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            A+N ++D L K    E  W     MK  G    + T+    D+   +GK  E    ++ M
Sbjct: 790  AYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEM 849

Query: 174  SMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAILLEGWEKEGN 232
               G + + +  N ++  + +  N   +A++ + + +     P   ++  L++G  K G 
Sbjct: 850  LFRGCKPNTITHNIVIFGLVKS-NSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGR 908

Query: 233  VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
            +EEA + F EM++ +   P   L Y   +    +   V+ A +  R M  E   P LK +
Sbjct: 909  LEEAKQFFEEMLD-YGCMPNCPL-YNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSY 966

Query: 293  SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
            S  +D L  +     A+  ++ +   G +  P+L+ YN +I  L  +  V+     FD+M
Sbjct: 967  SIMVDCLCMVGKVDDALHYFEELKLSGLD--PDLVCYNLMINGLGRSQRVEEALSLFDEM 1024

Query: 353  VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
               G  PD  TYN +   L     V E  K + E+     +P        I     +  P
Sbjct: 1025 RNRGITPDLYTYNALILNLGIAGMVEEAGKMYEELQLKGLEPNVFTYNALIRGHSMSGNP 1084

Query: 413  EIAIEIWNYILENGILP 429
            + A  ++  ++  G  P
Sbjct: 1085 DRAYAVYKKMMVGGCRP 1101



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 121/275 (44%), Gaps = 6/275 (2%)

Query: 184  AVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
            A NSL+  + +    T  A     ++K     PD  ++ + L+   K G ++E    + E
Sbjct: 790  AYNSLIDGLLKAR-LTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEE 848

Query: 243  MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
            M+  F     + + +   +  L++   +D+A+     +   +  PT   +   +D L+KL
Sbjct: 849  ML--FRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKL 906

Query: 303  NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSL 362
                 A Q ++ M+  G   MPN  +YN ++       DV+     F +MV  G  PD  
Sbjct: 907  GRLEEAKQFFEEMLDYG--CMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLK 964

Query: 363  TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 422
            +Y+++ +CL    +V +   +F E+  +   P  +     I  L  +   E A+ +++ +
Sbjct: 965  SYSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEM 1024

Query: 423  LENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
               GI P   + N L++ L   G + +  +  EE+
Sbjct: 1025 RNRGITPDLYTYNALILNLGIAGMVEEAGKMYEEL 1059



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 72/328 (21%), Positives = 142/328 (43%), Gaps = 14/328 (4%)

Query: 119  MVDVLGKNGRFEQMWNAVRVMKEDGVL--SLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176
            +V  L K+G+    +N    + +   +  SL  + S+ D    A   + A   F  M   
Sbjct: 758  LVKFLCKHGKAVDAYNVFLKLTKSFCITPSLEAYNSLIDGLLKARLTEMAWGLFYKMKNA 817

Query: 177  GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV----DPDGDSFAILLEGWEKEGN 232
            G   DV   N  L A+     ++ +  E  +  ++++     P+  +  I++ G  K  +
Sbjct: 818  GCTPDVFTYNLFLDAL----GKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFGLVKSNS 873

Query: 233  VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
            +++A   + +++   +++P     Y   +  L++  +++EA +F   M    C P    +
Sbjct: 874  LDKAIDLYYDLMSG-DFSPTP-WTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLY 931

Query: 293  SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
            +  ++   K  D   A +L+  MV  G  + P+L  Y+ ++  LC    VD+   +F+++
Sbjct: 932  NILMNGFGKQGDVETACELFRRMVKEG--IRPDLKSYSIMVDCLCMVGKVDDALHYFEEL 989

Query: 353  VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
               G  PD + YN++   L +++RV E    F EM      P        I  L  A   
Sbjct: 990  KLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMV 1049

Query: 413  EIAIEIWNYILENGILPLEASANELLVG 440
            E A +++  +   G+ P   + N L+ G
Sbjct: 1050 EEAGKMYEELQLKGLEPNVFTYNALIRG 1077



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 85/194 (43%), Gaps = 2/194 (1%)

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
           +Y   +  L++     EALK  R M  E   P+LK +S  +  L K  D    + L   M
Sbjct: 194 SYIGLIHLLLKSGFCREALKVYRRMVSEGIKPSLKTYSALMVALGKRRDIETVMGLLQEM 253

Query: 316 VGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 375
             +G  L PN+  +   I +L     +D  +    +M   G  PD +TY ++ + L    
Sbjct: 254 ESLG--LRPNIYTFTICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAG 311

Query: 376 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 435
           +++  ++ F +M  +  +P  +   T +    D  + +   E W+ +  +G LP   +  
Sbjct: 312 KLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSEMEADGYLPDVVTFT 371

Query: 436 ELLVGLRNLGRLSD 449
            L+  L  +G++ +
Sbjct: 372 ILIDALCKVGKVDE 385



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 87/185 (47%), Gaps = 13/185 (7%)

Query: 116  WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
            +N++++  GK G  E      R M ++G+   L +++ + D  C  GK D+A+  F+ + 
Sbjct: 931  YNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELK 990

Query: 175  MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNV 233
            + G++ D+V  N +++ + R + +   AL   + ++ + + PD  ++  L+      G V
Sbjct: 991  LSGLDPDLVCYNLMINGLGRSQ-RVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMV 1049

Query: 234  EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV----DEALKFLRVMKGENCFPTL 289
            EEA K + E+  + +    +V  Y      LIRG  +    D A    + M    C P  
Sbjct: 1050 EEAGKMYEEL--QLKGLEPNVFTYN----ALIRGHSMSGNPDRAYAVYKKMMVGGCRPNT 1103

Query: 290  KFFSN 294
              F+ 
Sbjct: 1104 GTFAQ 1108



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/301 (20%), Positives = 126/301 (41%), Gaps = 42/301 (13%)

Query: 101  FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNA-----------------------VR 137
            F++    G     + +NL +D LGK+G+ +++++                        V+
Sbjct: 811  FYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFGLVK 870

Query: 138  VMKEDGVLSLP-------------TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVA 184
                D  + L              T+  + D     G+ +EA   F+ M  +G   +   
Sbjct: 871  SNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPL 930

Query: 185  VNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244
             N L++   +Q +  +    F   VK+ + PD  S++I+++     G V++A   F E+ 
Sbjct: 931  YNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEEL- 989

Query: 245  ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 304
             +       ++ Y   +  L R ++V+EAL     M+     P L +  NAL + + +  
Sbjct: 990  -KLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGITPDL-YTYNALILNLGIAG 1047

Query: 305  STH-AVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLT 363
                A ++++ +   G  L PN+  YNA+I     + + D  +  + +M+  G  P++ T
Sbjct: 1048 MVEEAGKMYEELQLKG--LEPNVFTYNALIRGHSMSGNPDRAYAVYKKMMVGGCRPNTGT 1105

Query: 364  Y 364
            +
Sbjct: 1106 F 1106



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 116/286 (40%), Gaps = 8/286 (2%)

Query: 179  EQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEAN 237
            E D V +  L+  +C+          FL   K   + P  +++  L++G  K    E A 
Sbjct: 750  EDDSVLI-PLVKFLCKHGKAVDAYNVFLKLTKSFCITPSLEAYNSLIDGLLKARLTEMAW 808

Query: 238  KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297
              F +M +     P+ V  Y  FL  L +  ++ E       M    C P     +  + 
Sbjct: 809  GLFYKM-KNAGCTPD-VFTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIF 866

Query: 298  ILVKLNDSTHAVQLW-DIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG 356
             LVK N    A+ L+ D+M G   +  P    Y  +I  L     ++   +FF++M+ +G
Sbjct: 867  GLVKSNSLDKAIDLYYDLMSG---DFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYG 923

Query: 357  AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 416
              P+   YN++     K   V    + F  M+K   +P   + +  +  L    + + A+
Sbjct: 924  CMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDAL 983

Query: 417  EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
              +  +  +G+ P     N ++ GL    R+ +     +EM NR I
Sbjct: 984  HYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGI 1029


>gi|125548475|gb|EAY94297.1| hypothetical protein OsI_16066 [Oryza sativa Indica Group]
          Length = 602

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 149/341 (43%), Gaps = 6/341 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG       +N++++   K   + Q    + +M+ +G   +  T+  + D  CG G  D+
Sbjct: 196 RGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDD 255

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A+     +  HG +   V  N++L  +C  E            +++   P+  +F +++ 
Sbjct: 256 ALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIY 315

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
              ++G +++A +   +M +       +++ Y   +  L   + VD A+  L  MK   C
Sbjct: 316 SLCRKGLLQQAIQLLEKMSK--HGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGC 373

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P +  ++  L  L        A +L D M   G   +P+ + +N +IG LC    + + 
Sbjct: 374 KPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNG--CLPDNVTFNTLIGFLCQKGLMVDA 431

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
              F QM   G  P+S+TY+ I   L K  ++ +  + F+EM    + P  +    A   
Sbjct: 432 IEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPDKIYQLLA-EC 490

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 446
           L D D  E AI+    + ++GI P     N +L+GL   G+
Sbjct: 491 LNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGK 531



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 152/352 (43%), Gaps = 24/352 (6%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSFD 171
           A+  + D   + GR   + +A RV+   G+   P   T+  +  + C  G+  +A+   D
Sbjct: 137 AYGALTDGYCRAGR---LGDARRVVG--GMPVQPNAYTYNPLIHTLCERGQVRDALSVLD 191

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKE 230
            M   G   DVV  N LL A C+      +A+E ++ ++ +   P+  ++ +L++G   E
Sbjct: 192 DMLCRGCAPDVVTYNILLEATCKGRGY-RQAMELIDLMRAEGCTPNNVTYNVLMDGMCGE 250

Query: 231 GNVEEANKTFGEMVERFEWNPEH-----VLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+V++A       +E     P H      + Y T L  L   ++  +A + +  M  ENC
Sbjct: 251 GDVDDA-------LELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENC 303

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P    F+  +  L +      A+QL + M   G     N++ YNA+I  LC   +VD  
Sbjct: 304 PPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTA--NIVTYNAIINGLCEQRNVDGA 361

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
                +M  +G  PD +TYN + + L    +  + E+    M +N   P  +   T I  
Sbjct: 362 MGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCLPDNVTFNTLIGF 421

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           L        AIE++  + + G  P   + + ++ GL    +L        EM
Sbjct: 422 LCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEM 473



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 81/387 (20%), Positives = 159/387 (41%), Gaps = 11/387 (2%)

Query: 47  PYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAG 106
           P  + + R++ ++      DD E  +   G   T  + +  L   Y       D  R  G
Sbjct: 101 PDAALANRLVRDLCRRGRPDDAERVVGACGPAATV-VAYGALTDGYCRAGRLGDARRVVG 159

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
            G  + P  Y +N ++  L + G+     + +  M   G    + T+  + ++ C    Y
Sbjct: 160 -GMPVQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGY 218

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL-NRVKKIVDPDGDSFAI 222
            +A+   D+M   G   + V  N L+  +C  E     ALE L N       P   ++  
Sbjct: 219 RQAMELIDLMRAEGCTPNNVTYNVLMDGMC-GEGDVDDALELLRNLPSHGCKPSTVNYNT 277

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           +L+G        +A++   EM+   E  P +   +   + +L R   + +A++ L  M  
Sbjct: 278 VLKGLCSAERWGDADELVTEMLR--ENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSK 335

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
             C   +  ++  ++ L +  +   A+ L   M   G    P+++ YN ++  LC+    
Sbjct: 336 HGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCK--PDIVTYNTLLKGLCSAAQW 393

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
            +     D M  +G  PD++T+N +   L +   + +  + F +M      P  +  +T 
Sbjct: 394 VDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTI 453

Query: 403 ITMLLDADEPEIAIEIWNYILENGILP 429
           I+ L  A + + A+E++N +   G  P
Sbjct: 454 ISGLAKATKLDQALELFNEMGHKGFNP 480



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/276 (21%), Positives = 113/276 (40%), Gaps = 36/276 (13%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF  +  S C  G   +A+   + MS HG   ++V  N++++ +C Q N    A+  L++
Sbjct: 309 TFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRN-VDGAMGLLSK 367

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           +K     PD  ++  LL+G        +A +    M +     P++V  + T +  L + 
Sbjct: 368 MKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCL-PDNV-TFNTLIGFLCQK 425

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFN------ 321
             + +A++  + M  + C P    +S  +  L K      A++L++ M   GFN      
Sbjct: 426 GLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPDKIYQ 485

Query: 322 --------------------------LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
                                     + P+ ++YNA++  LC N   +        MV  
Sbjct: 486 LLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSS 545

Query: 356 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
           G  PD LTY ++ E L     ++E  +   ++   +
Sbjct: 546 GCMPDDLTYVILIEGLAYEGYLNEARELLIKLCSRD 581



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/315 (20%), Positives = 127/315 (40%), Gaps = 10/315 (3%)

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG 217
           C  G+ D+A     V+   G    VVA  +L    CR   +   A   +  +   V P+ 
Sbjct: 114 CRRGRPDDAER---VVGACGPAATVVAYGALTDGYCR-AGRLGDARRVVGGMP--VQPNA 167

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            ++  L+    + G V +A     +M+ R    P+ V+ Y   L    +G+   +A++ +
Sbjct: 168 YTYNPLIHTLCERGQVRDALSVLDDMLCR-GCAPD-VVTYNILLEATCKGRGYRQAMELI 225

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337
            +M+ E C P    ++  +D +    D   A++L   +   G    P+ + YN V+  LC
Sbjct: 226 DLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCK--PSTVNYNTVLKGLC 283

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
           + +   +      +M+     P+  T+N++   L +   + +  +   +M K+      +
Sbjct: 284 SAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIV 343

Query: 398 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
                I  L +    + A+ + + +   G  P   + N LL GL +  +  D     + M
Sbjct: 344 TYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNM 403

Query: 458 LNRRILIYEVTMHKL 472
                L   VT + L
Sbjct: 404 TQNGCLPDNVTFNTL 418


>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1246

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 93/391 (23%), Positives = 174/391 (44%), Gaps = 45/391 (11%)

Query: 110 RLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           +L+P    +N+++  LGK G+  +       M E G   +  TF S+ D        D A
Sbjct: 580 KLAPTVVTYNILLTGLGKEGKILKALELFGSMTESGCPPNTITFNSLLDCLSKNDAVDLA 639

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
           +  F  M+M     DV+  N+++  + R E +   A  F +++KK + PD  +   L+ G
Sbjct: 640 LKMFCRMTMMNCNPDVLTYNTIIYGLIR-EGRIDYAFWFFHQMKKFLSPDYVTLCTLIPG 698

Query: 227 WEKEGNVEEANKT----------------FGEMVERF--EWNPEHVLAYETFLIT----- 263
             + G VE+A K                 +GE++E    E   E  +++   L+      
Sbjct: 699 VVRHGRVEDAIKVVMEFVHQACLQTNSQFWGELMECILTEAEIEEAISFAEILVCNSVCQ 758

Query: 264 -------LI-----RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
                  LI     R K +D    F +  K     PTL+ ++  +D L+  N +  A++L
Sbjct: 759 DDHVMLPLIKVLCKRKKALDAQNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKALEL 818

Query: 312 WDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECL 371
           ++ M   G +  PN   YN ++     +  ++ ++  + +M   G  P+++T+N+I   L
Sbjct: 819 FEDMKSAGTH--PNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISAL 876

Query: 372 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 431
           +K+  +++    ++E++  ++ PTP      I  LL A   E A++I+  +L+ G  P  
Sbjct: 877 VKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNS 936

Query: 432 ASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
              N L+ G    G +     FA E+  + +
Sbjct: 937 VIYNILINGFGKSGEID----FACELFKKMV 963



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 152/344 (44%), Gaps = 11/344 (3%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G R + Y + + +  LG+  R +  W   + M ++G    + T+  + D+ C AGK D+A
Sbjct: 265 GLRPNIYTYTICIRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKA 324

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD---PDGDSFAIL 223
              +  M       D V   +L+    +  +  +    F N ++  VD   PD  ++ IL
Sbjct: 325 KELYVKMRASSHSPDRVTYITLMDKFGKVGDLET-VKRFWNEME--VDGYAPDVVTYTIL 381

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           +E   K G+V+ A      M  +  +   H   Y T +  L++ +++DEAL+ L  M+  
Sbjct: 382 IEALCKSGDVDRAFDMLDVMTTKGIFPNLH--TYNTMICGLLKARRLDEALELLENMESL 439

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
              PT   +   +D   K  D   A+  ++ M   G  +MP++   NA +  L     + 
Sbjct: 440 GVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRG--IMPSIAACNASLYTLAETGRIS 497

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
                F+ +   G  PDS+TYNM+ +C  K  ++ +  +   EMI    +P  +   + I
Sbjct: 498 EAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLI 557

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
             L  A   + A +++  +    + P   + N LL GL   G++
Sbjct: 558 NTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKI 601



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 91/384 (23%), Positives = 170/384 (44%), Gaps = 11/384 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDV 172
           + +N M+  L K  R ++    +  M+  GV     ++    D Y  +G   +A+ +F+ 
Sbjct: 411 HTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFET 470

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEG 231
           M   G+   + A N+ L  +  +  + S A +  N + K  + PD  ++ +L++ + K G
Sbjct: 471 MKKRGIMPSIAACNASLYTLA-ETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAG 529

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            +++A +   EM+ +    P+ V+   + + TL +  +VD A K    +K     PT+  
Sbjct: 530 QIDKATQLLSEMISK-GCEPD-VMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVT 587

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           ++  L  L K      A++L+  M   G    PN I +N+++  L  ND VD   + F +
Sbjct: 588 YNILLTGLGKEGKILKALELFGSMTESG--CPPNTITFNSLLDCLSKNDAVDLALKMFCR 645

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M      PD LTYN I   LI+  R+     FFH+M K    P  +   T I  ++    
Sbjct: 646 MTMMNCNPDVLTYNTIIYGLIREGRIDYAFWFFHQM-KKFLSPDYVTLCTLIPGVVRHGR 704

Query: 412 PEIAIEIWNYILENGILPLEASA-NELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 470
            E AI++    +    L   +    EL+  +     + +   FAE ++   +   +  M 
Sbjct: 705 VEDAIKVVMEFVHQACLQTNSQFWGELMECILTEAEIEEAISFAEILVCNSVCQDDHVML 764

Query: 471 KLKKAFYNESRSM--RDIFDSLER 492
            L K      +++  +++FD   +
Sbjct: 765 PLIKVLCKRKKALDAQNVFDKFTK 788



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 93/407 (22%), Positives = 172/407 (42%), Gaps = 47/407 (11%)

Query: 91  SYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SL 147
           S   P+SA  +F+   +      +  A N M+++L +  R E M     +M++  +  +L
Sbjct: 107 SISDPNSAFSYFKIVSQLTNFVHTTDACNYMLEILREQRRIEDMVFVFDLMQKKVIYRNL 166

Query: 148 PTFASIFD----------------------------SYCG------AGKYDEAVMSFDVM 173
            T+ +IF                             SY G       G  +EA+  +  M
Sbjct: 167 TTYMTIFKALSIKGGIGRAPFALRKMTEVGFILNAYSYNGLIHLLLPGFCNEALKVYKRM 226

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGN 232
              G++  +   ++L+ A+ R+   T + +  L  +K I + P+  ++ I +    +   
Sbjct: 227 ISEGMKPSMKTYSALMVALGRR-GDTRKIMNLLEEMKSIGLRPNIYTYTICIRALGRARR 285

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +++A   F EM +  E     V+ Y   +  L    ++D+A +    M+  +  P    +
Sbjct: 286 IDDAWGIFKEMDD--EGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRASSHSPDRVTY 343

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
              +D   K+ D     + W+ M   G+   P+++ Y  +I  LC + DVD  F   D M
Sbjct: 344 ITLMDKFGKVGDLETVKRFWNEMEVDGY--APDVVTYTILIEALCKSGDVDRAFDMLDVM 401

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
              G FP+  TYN +   L+K +R+ E  +    M     +PT  +    I     + +P
Sbjct: 402 TTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFIDYYGKSGDP 461

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
             AI+ +  + + GI+P  A+ N  L  L   GR+S+    AE++ N
Sbjct: 462 AKAIDTFETMKKRGIMPSIAACNASLYTLAETGRISE----AEDIFN 504



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 66/302 (21%), Positives = 134/302 (44%), Gaps = 7/302 (2%)

Query: 158  CGAGKYDEAVMSFDVMSMH-GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDP 215
            C   K  +A   FD  + + G+   + + N L+  +    N T +ALE    +K     P
Sbjct: 771  CKRKKALDAQNVFDKFTKNLGIHPTLESYNCLMDGLL-GSNFTEKALELFEDMKSAGTHP 829

Query: 216  DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK 275
            +  ++ +LL+   K   + +    + EM  R      + + +   +  L++   +++AL 
Sbjct: 830  NNFTYNLLLDAHGKSKRINKLYDLYSEMRSR--GCEPNAITHNIIISALVKSNNLNKALD 887

Query: 276  FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGL 335
                +   +  PT   +   +D L+K   S  A+++++ M+  G    PN ++YN +I  
Sbjct: 888  LYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCG--PNSVIYNILING 945

Query: 336  LCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 395
               + ++D     F +MV  G  PD  +Y ++ ECL    R+ E  ++F E+      P 
Sbjct: 946  FGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPD 1005

Query: 396  PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 455
             ++    I  L  +   + A+ +++ +   GI P   + N L++ L   G++    +  E
Sbjct: 1006 TVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYE 1065

Query: 456  EM 457
            E+
Sbjct: 1066 EL 1067



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/296 (20%), Positives = 135/296 (45%), Gaps = 6/296 (2%)

Query: 146  SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
            +L ++  + D   G+   ++A+  F+ M   G   +    N LL A  + + + ++  + 
Sbjct: 795  TLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSK-RINKLYDL 853

Query: 206  LNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
             + ++ +  +P+  +  I++    K  N+ +A   + E++   +++P     Y   +  L
Sbjct: 854  YSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSG-DFSPTPC-TYGPLIDGL 911

Query: 265  IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
            ++  + ++A+K    M    C P    ++  ++   K  +   A +L+  MV  G  + P
Sbjct: 912  LKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEG--IRP 969

Query: 325  NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
            +L  Y  ++  LC    +D   ++F+++   G  PD+++YN I   L K++R+ E    F
Sbjct: 970  DLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLF 1029

Query: 385  HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 440
             EM      P        I  L  A + ++A++++  +   G+ P   + N L+ G
Sbjct: 1030 SEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGLEPSVFTYNALIRG 1085



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 74/360 (20%), Positives = 141/360 (39%), Gaps = 42/360 (11%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAG 161
           R    G + S   ++ ++  LG+ G   ++ N +  MK  G+  ++ T+     +   A 
Sbjct: 225 RMISEGMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYTICIRALGRAR 284

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV-DPDGDSF 220
           + D+A   F  M   G   DV+    L+ A+C    +  +A E   +++     PD  ++
Sbjct: 285 RIDDAWGIFKEMDDEGCGPDVITYTVLIDALC-AAGKLDKAKELYVKMRASSHSPDRVTY 343

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
             L++ + K G++E         V+RF WN   V  Y   ++T                 
Sbjct: 344 ITLMDKFGKVGDLET--------VKRF-WNEMEVDGYAPDVVT----------------- 377

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
                      ++  ++ L K  D   A  + D+M   G  + PNL  YN +I  L    
Sbjct: 378 -----------YTILIEALCKSGDVDRAFDMLDVMTTKG--IFPNLHTYNTMICGLLKAR 424

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
            +D      + M   G  P + +Y +  +   K+    +    F  M K    P+   C 
Sbjct: 425 RLDEALELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACN 484

Query: 401 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
            ++  L +      A +I+N + + G+ P   + N L+      G++    +   EM+++
Sbjct: 485 ASLYTLAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISK 544



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/305 (21%), Positives = 132/305 (43%), Gaps = 15/305 (4%)

Query: 164  DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-----VDPDGD 218
            +EA+   +++  + V QD   +  L+  +C+++    +AL+  N   K      + P  +
Sbjct: 742  EEAISFAEILVCNSVCQDDHVMLPLIKVLCKRK----KALDAQNVFDKFTKNLGIHPTLE 797

Query: 219  SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
            S+  L++G       E+A + F +M +    +P +   Y   L    + K++++      
Sbjct: 798  SYNCLMDGLLGSNFTEKALELFEDM-KSAGTHPNN-FTYNLLLDAHGKSKRINKLYDLYS 855

Query: 279  VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW-DIMVGIGFNLMPNLIMYNAVIGLLC 337
             M+   C P     +  +  LVK N+   A+ L+ ++M G   +  P    Y  +I  L 
Sbjct: 856  EMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSG---DFSPTPCTYGPLIDGLL 912

Query: 338  NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
                 +   + F++M+ +G  P+S+ YN++     K+  +    + F +M+K   +P   
Sbjct: 913  KAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLK 972

Query: 398  NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
            +    +  L      + A++ +  +   G+ P   S N ++ GL    RL +      EM
Sbjct: 973  SYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEM 1032

Query: 458  LNRRI 462
             NR I
Sbjct: 1033 KNRGI 1037



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 127/294 (43%), Gaps = 42/294 (14%)

Query: 108  GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-----------------------V 144
            G   + + +NL++D  GK+ R  ++++    M+  G                        
Sbjct: 826  GTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKA 885

Query: 145  LSL-------------PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
            L L              T+  + D    AG+ ++A+  F+ M  +G   + V  N L++ 
Sbjct: 886  LDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILING 945

Query: 192  ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
              +          F   VK+ + PD  S+ IL+E     G ++EA + F E+ +    +P
Sbjct: 946  FGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEEL-KLTGLDP 1004

Query: 252  EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH-AVQ 310
            + V +Y   +  L + +++DEAL     MK     P L +  NAL + + +      AV+
Sbjct: 1005 DTV-SYNFIINGLGKSRRLDEALSLFSEMKNRGISPDL-YTYNALILHLGIAGKVDVAVK 1062

Query: 311  LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTY 364
            +++ +  +G  L P++  YNA+I     + + D  F  F +M+  G  P++ T+
Sbjct: 1063 MYEELQLVG--LEPSVFTYNALIRGHSLSGNKDQAFSVFKKMMVVGCSPNTETF 1114



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 86/184 (46%), Gaps = 13/184 (7%)

Query: 116  WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
            +N++++  GK+G  +      + M ++G+   L ++  + +  C  G+ DEAV  F+ + 
Sbjct: 939  YNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELK 998

Query: 175  MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNV 233
            + G++ D V+ N +++ + +   +   AL   + +K + + PD  ++  L+      G V
Sbjct: 999  LTGLDPDTVSYNFIINGLGKSR-RLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKV 1057

Query: 234  EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV----DEALKFLRVMKGENCFPTL 289
            + A K + E+ +     P  V  Y      LIRG  +    D+A    + M    C P  
Sbjct: 1058 DVAVKMYEEL-QLVGLEPS-VFTYN----ALIRGHSLSGNKDQAFSVFKKMMVVGCSPNT 1111

Query: 290  KFFS 293
            + F+
Sbjct: 1112 ETFA 1115



 Score = 39.3 bits (90), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 1/121 (0%)

Query: 115  AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            ++N +++ LGK+ R ++  +    MK  G+   L T+ ++      AGK D AV  ++ +
Sbjct: 1008 SYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEEL 1067

Query: 174  SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
             + G+E  V   N+L+       N+      F   +     P+ ++FA L   + + G V
Sbjct: 1068 QLVGLEPSVFTYNALIRGHSLSGNKDQAFSVFKKMMVVGCSPNTETFAQLPNKYPRAGLV 1127

Query: 234  E 234
             
Sbjct: 1128 H 1128


>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
          Length = 455

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 95/377 (25%), Positives = 164/377 (43%), Gaps = 14/377 (3%)

Query: 91  SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-- 148
           S   P+ A++  R   R   ++   +N ++      GR +   + +R M+E G ++ P  
Sbjct: 53  SAGKPARALELLRQMPRPNAVT---YNTVIAGFCSRGRVQAALDIMREMRERGGIA-PNQ 108

Query: 149 -TFASIFDSYCGAGKYDEAVMSFDVMSMHG-VEQDVVAVNSLLSAICRQENQTSRALEFL 206
            T+ ++   +C  G+ DEAV  FD M   G V+ + V  N+L+   C Q  +   AL + 
Sbjct: 109 YTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQ-GKLDTALLYR 167

Query: 207 NR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
           +R V++ V     ++ +L+     +G   EA +   EM  +    P+ V  Y   +    
Sbjct: 168 DRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGK-GLAPD-VFTYNILINGHC 225

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN 325
           +   V +AL+    M       T+  +++ +  L K        +L+D  V  G    P+
Sbjct: 226 KEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIR--PD 283

Query: 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 385
           L++YNA+I     + ++D  F    +M      PD +TYN +   L    RV E  K   
Sbjct: 284 LVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLID 343

Query: 386 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
           EM K   QP  +   T I+      + + A+ I N ++  G  P   + N L+ GL   G
Sbjct: 344 EMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNG 403

Query: 446 RLSDVRRFAEEMLNRRI 462
           +  D     +EM+   I
Sbjct: 404 QGDDAENMVKEMVENGI 420



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 91/352 (25%), Positives = 152/352 (43%), Gaps = 16/352 (4%)

Query: 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204
           L   TF  +    C AGK   A+     M       + V  N++++  C +  +   AL+
Sbjct: 39  LCTTTFNIMLRHLCSAGKPARALELLRQMP----RPNAVTYNTVIAGFCSR-GRVQAALD 93

Query: 205 FLN--RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI 262
            +   R +  + P+  ++  ++ GW K G V+EA K F EM+ + E  PE V+ Y   + 
Sbjct: 94  IMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVM-YNALIG 152

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL 322
                 ++D AL +   M       T+  ++  +  L      T A +L + M G G  L
Sbjct: 153 GYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKG--L 210

Query: 323 MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
            P++  YN +I   C   +V      F+ M   G     +TY  +   L K  +V E +K
Sbjct: 211 APDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDK 270

Query: 383 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 442
            F E ++   +P  +     I     +   + A EI   + +  I P + + N L+ GL 
Sbjct: 271 LFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLC 330

Query: 443 NLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMR-DIFDSLERR 493
            LGR+ + R+  +EM  R I    VT + L   +     SM+ D+ D+L  R
Sbjct: 331 LLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGY-----SMKGDVKDALRIR 377



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 127/313 (40%), Gaps = 40/313 (12%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAG 161
           R   RG  ++   +NL+V  L  +GR  + +  V  M   G+   + T+  + + +C  G
Sbjct: 169 RMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEG 228

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221
              +A+  F+ MS  GV   VV   SL+ A+ ++         F   V++ + PD   + 
Sbjct: 229 NVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYN 288

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L+      GN++ A +  GEM E+    P+ V  Y T +  L    +VDEA K +  M 
Sbjct: 289 ALINSHSTSGNIDRAFEIMGEM-EKKRIAPDDV-TYNTLMRGLCLLGRVDEARKLIDEM- 345

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
                                  +   +Q             P+L+ YN +I       D
Sbjct: 346 -----------------------TKRGIQ-------------PDLVTYNTLISGYSMKGD 369

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
           V +  R  ++M+  G  P  LTYN + + L KN +  + E    EM++N   P      +
Sbjct: 370 VKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYIS 429

Query: 402 AITMLLDADEPEI 414
            I  L   DE  I
Sbjct: 430 LIEGLTTEDERAI 442


>gi|255661012|gb|ACU25675.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
          Length = 376

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 162/362 (44%), Gaps = 16/362 (4%)

Query: 109 QRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
            ++SP A  +N M++   + GR +  +    +M  +G  S+ +F  +       GK DE 
Sbjct: 19  SKVSPDAVVYNAMLNGFFRVGRIKDCFELWEMMGREGSRSVASFNIMMRGLFDNGKVDEV 78

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQE--NQTSRALEFLNRVKKIVDPDGDSFAILL 224
           +   ++M   G  +D +    L+   C+    N++   LE   R   ++D    +++ ++
Sbjct: 79  ISILELMKKSGFIEDSITYGILVHGFCKNGYINKSLHVLEIAERKGGVLDAF--AYSAMI 136

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G  KE  +++A      M++       HV  Y   +  L+   + ++A++ +R M   N
Sbjct: 137 NGLCKEAKLDKAVSVLNGMIKSGCKPNAHV--YNALINGLVGASKFEDAVRVVREMGTTN 194

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
           C PTL  +S  ++ L K+     A  L   M+  G N  P++I Y+ ++  LC    V+ 
Sbjct: 195 CSPTLVTYSTLINGLCKVERFGEAYDLVKEMLZKGLN--PSVITYSLLMKGLCLGHKVEM 252

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
             +  +Q+   G  PD   +N++   L    +       + +M  N W   P N  T  T
Sbjct: 253 ALQLXNQVTSKGFKPDVQMHNILIHGLCSVGKTQLALLLYLDM--NRWNCAP-NLVTHNT 309

Query: 405 ML---LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461
           ++      D+   A+ IW  IL NG+ P   S N  L GL +  R+SD   F  + + ++
Sbjct: 310 LMEGFYKDDDIRNALVIWARILRNGLQPDIISYNITLKGLCSCNRISDAILFLHDAVTKK 369

Query: 462 IL 463
           I+
Sbjct: 370 IV 371



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 67/332 (20%), Positives = 143/332 (43%), Gaps = 40/332 (12%)

Query: 100 DFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYC 158
           + +   GR    S  ++N+M+  L  NG+ +++ + + +MK+ G +    T+  +   +C
Sbjct: 46  ELWEMMGREGSRSVASFNIMMRGLFDNGKVDEVISILELMKKSGFIEDSITYGILVHGFC 105

Query: 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDG 217
             G  ++++   ++    G   D  A +++++ +C+ E +  +A+  LN  +K    P+ 
Sbjct: 106 KNGYINKSLHVLEIAERKGGVLDAFAYSAMINGLCK-EAKLDKAVSVLNGMIKSGCKPNA 164

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEM---------------------VERFE-------- 248
             +  L+ G       E+A +   EM                     VERF         
Sbjct: 165 HVYNALINGLVGASKFEDAVRVVREMGTTNCSPTLVTYSTLINGLCKVERFGEAYDLVKE 224

Query: 249 -----WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303
                 NP  V+ Y   +  L  G +V+ AL+    +  +   P ++  +  +  L  + 
Sbjct: 225 MLZKGLNPS-VITYSLLMKGLCLGHKVEMALQLXNQVTSKGFKPDVQMHNILIHGLCSVG 283

Query: 304 DSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLT 363
            +  A+ L+  M    +N  PNL+ +N ++     +DD+ N    + +++ +G  PD ++
Sbjct: 284 KTQLALLLYLDMNR--WNCAPNLVTHNTLMEGFYKDDDIRNALVIWARILRNGLQPDIIS 341

Query: 364 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 395
           YN+  + L    R+ +   F H+ +  +  PT
Sbjct: 342 YNITLKGLCSCNRISDAILFLHDAVTKKIVPT 373



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 60/289 (20%), Positives = 118/289 (40%), Gaps = 5/289 (1%)

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG 217
           C +G  D A   +  +    V  D V  N++L+   R   +     E    + +      
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGFFRV-GRIKDCFELWEMMGREGSRSV 59

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            SF I++ G    G V+E      E++++  +  E  + Y   +    +   ++++L  L
Sbjct: 60  ASFNIMMRGLFDNGKVDEVISIL-ELMKKSGF-IEDSITYGILVHGFCKNGYINKSLHVL 117

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337
            + + +        +S  ++ L K      AV + + M+  G    PN  +YNA+I  L 
Sbjct: 118 EIAERKGGVLDAFAYSAMINGLCKEAKLDKAVSVLNGMIKSGCK--PNAHVYNALINGLV 175

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
                ++  R   +M      P  +TY+ +   L K +R  E      EM++    P+ +
Sbjct: 176 GASKFEDAVRVVREMGTTNCSPTLVTYSTLINGLCKVERFGEAYDLVKEMLZKGLNPSVI 235

Query: 398 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 446
             +  +  L    + E+A+++ N +   G  P     N L+ GL ++G+
Sbjct: 236 TYSLLMKGLCLGHKVEMALQLXNQVTSKGFKPDVQMHNILIHGLCSVGK 284



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/259 (20%), Positives = 118/259 (45%), Gaps = 7/259 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G  L  +A++ M++ L K  + ++  + +  M + G   +   + ++ +   GA K+++
Sbjct: 123 KGGVLDAFAYSAMINGLCKEAKLDKAVSVLNGMIKSGCKPNAHVYNALINGLVGASKFED 182

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILL 224
           AV     M        +V  ++L++ +C+ E +   A + +   ++K ++P   ++++L+
Sbjct: 183 AVRVVREMGTTNCSPTLVTYSTLINGLCKVE-RFGEAYDLVKEMLZKGLNPSVITYSLLM 241

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           +G      VE A +   ++  +  + P+ V  +   +  L    +   AL     M   N
Sbjct: 242 KGLCLGHKVEMALQLXNQVTSK-GFKPD-VQMHNILIHGLCSVGKTQLALLLYLDMNRWN 299

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
           C P L   +  ++   K +D  +A+ +W  ++  G  L P++I YN  +  LC+ + + +
Sbjct: 300 CAPNLVTHNTLMEGFYKDDDIRNALVIWARILRNG--LQPDIISYNITLKGLCSCNRISD 357

Query: 345 VFRFFDQMVFHGAFPDSLT 363
              F    V     P  +T
Sbjct: 358 AILFLHDAVTKKIVPTIIT 376


>gi|449462543|ref|XP_004149000.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Cucumis sativus]
          Length = 822

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 93/390 (23%), Positives = 167/390 (42%), Gaps = 46/390 (11%)

Query: 96  SSAVD-FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIF 154
           S AVD F+  A +G   S    N ++  L K   FE+     RVM E     + +F ++ 
Sbjct: 191 SCAVDVFYLLARKGTFPSLKTCNFLLSSLVKANEFEKCCEVFRVMSEGACPDVFSFTNVI 250

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIV 213
           ++ C  GK + A+  F  M   G+  +VV  N +++ +C Q  +   A E   ++  K V
Sbjct: 251 NALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLC-QNGRLDNAFELKEKMTVKGV 309

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
            P+  ++  L+ G  K    ++ N    EM+    +NP +V+ +   +    +   ++ A
Sbjct: 310 QPNLKTYGALINGLIKLNFFDKVNHVLDEMIGS-GFNP-NVVVFNNLIDGYCKMGNIEGA 367

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
           LK   VM  +N  PT                   +V L+ +M G                
Sbjct: 368 LKIKDVMISKNITPT-------------------SVTLYSLMQG---------------- 392

Query: 334 GLLCNNDDVDNVFRFFDQMVFHG--AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
              C +D +++     ++++  G    PD+  Y+++   L K  R H   +F   M+   
Sbjct: 393 --FCKSDQIEHAENALEEILSSGLSIHPDN-CYSVV-HWLCKKFRYHSAFRFTKMMLSRN 448

Query: 392 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 451
           ++P+ L     +  L    +   A E+W  +LE G    + ++N L+ GL   G+L +  
Sbjct: 449 FRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEAS 508

Query: 452 RFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
           R  +EML R + +  +T + L   F NE +
Sbjct: 509 RIVKEMLERGLPMDRITYNALILGFCNEGK 538



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 128/296 (43%), Gaps = 11/296 (3%)

Query: 78  IPTPDLVHEVLQLSYDSPSSAVDFFRW----AGRGQRLSPYAWNLMVDVLGKNGRFEQMW 133
           +P   + +  L L + +       FR       RG +   Y +N ++  L   G+ +   
Sbjct: 519 LPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAI 578

Query: 134 NAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI 192
                 K  G++S + T+  + + YC A + ++    F+ +    +E + +  N ++ A 
Sbjct: 579 KLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAH 638

Query: 193 CRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           C+  N  + AL+ L  +K K + P+  +++ L+ G    G VE+A     EM  R E   
Sbjct: 639 CQNGN-VAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEM--RKEGFV 695

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
            +V+ Y   +    +  Q+D A      M   N  P    ++  +D   KL +   A  L
Sbjct: 696 PNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNL 755

Query: 312 WDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMI 367
              M   G  ++P+++ YN +    C  +D+DN F+  DQM   G   D +TY  +
Sbjct: 756 LIKMKESG--IVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTL 809



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 69/343 (20%), Positives = 144/343 (41%), Gaps = 9/343 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCG 159
           +FR   +G   S    N ++  L   G+  +    V+ M E G+ +   T+ ++   +C 
Sbjct: 476 WFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCN 535

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGD 218
            GK +      + M+  G++ D+   N LL  +C    +   A++  +  K   +  +  
Sbjct: 536 EGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLC-NVGKLDDAIKLWDEFKASGLISNIH 594

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
           ++ I++EG+ K   +E+    F E++ ++ E N    + Y   +    +   V  AL+ L
Sbjct: 595 TYGIMMEGYCKANRIEDVENLFNELLSKKMELNS---IVYNIIIKAHCQNGNVAAALQLL 651

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337
             MK +   P    +S+ +  +  +     A  L D M   GF  +PN++ Y A+IG  C
Sbjct: 652 ENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGF--VPNVVCYTALIGGYC 709

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
               +D     + +M+     P+  TY ++ +   K   + +      +M ++   P  +
Sbjct: 710 KLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVV 769

Query: 398 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 440
                      A++ + A ++ + +   G+   E +   L+ G
Sbjct: 770 TYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTLVHG 812



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 104/247 (42%), Gaps = 6/247 (2%)

Query: 232 NVEEANKTFG--EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
           ++E AN  FG   +V RFEW     L    +  T  R      A+    ++  +  FP+L
Sbjct: 151 HIEIANALFGLTSVVGRFEWTQAFDLLIHVY-STQFRNLGFSCAVDVFYLLARKGTFPSL 209

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
           K  +  L  LVK N+     +++ +M        P++  +  VI  LC    ++N    F
Sbjct: 210 KTCNFLLSSLVKANEFEKCCEVFRVMSE---GACPDVFSFTNVINALCKGGKMENAIELF 266

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 409
            +M   G  P+ +TYN I   L +N R+    +   +M     QP        I  L+  
Sbjct: 267 MKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKL 326

Query: 410 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTM 469
           +  +    + + ++ +G  P     N L+ G   +G +    +  + M+++ I    VT+
Sbjct: 327 NFFDKVNHVLDEMIGSGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTL 386

Query: 470 HKLKKAF 476
           + L + F
Sbjct: 387 YSLMQGF 393



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 88/432 (20%), Positives = 152/432 (35%), Gaps = 65/432 (15%)

Query: 63  ASSDDIESA------LACTGIIPTPDLVHEVL-----QLSYDSPSSAVDFFRWA----GR 107
             SD IE A      +  +G+   PD  + V+     +  Y S       FR+      R
Sbjct: 394 CKSDQIEHAENALEEILSSGLSIHPDNCYSVVHWLCKKFRYHSA------FRFTKMMLSR 447

Query: 108 GQRLSPYAWNLMVDVLGKNGRF---EQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYD 164
             R S     ++V  L K+G+     ++W   R++++    S  T  ++    CGAGK  
Sbjct: 448 NFRPSDLLLTMLVCGLCKDGKHLEATELW--FRLLEKGSPASKVTSNALIHGLCGAGKLP 505

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
           EA      M   G+  D +  N+L+   C                               
Sbjct: 506 EASRIVKEMLERGLPMDRITYNALILGFCN------------------------------ 535

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
                EG VE   +   EM +R    P+ +  Y   L  L    ++D+A+K     K   
Sbjct: 536 -----EGKVEGCFRLREEMTKR-GIQPD-IYTYNFLLRGLCNVGKLDDAIKLWDEFKASG 588

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
               +  +   ++   K N       L++ ++     L  N I+YN +I   C N +V  
Sbjct: 589 LISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMEL--NSIVYNIIIKAHCQNGNVAA 646

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
             +  + M   G  P+  TY+ +   +     V + +    EM K  + P  +     I 
Sbjct: 647 ALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIG 706

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 464
                 + + A   W  ++   I P + +   ++ G   LG +        +M    I+ 
Sbjct: 707 GYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVP 766

Query: 465 YEVTMHKLKKAF 476
             VT + L   F
Sbjct: 767 DVVTYNVLTNGF 778


>gi|357450985|ref|XP_003595769.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484817|gb|AES66020.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 497

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 104/456 (22%), Positives = 201/456 (44%), Gaps = 35/456 (7%)

Query: 20  SSSTTTSPTS--HNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGI 77
           ++S  T P+S   NP   +     +H D+P ++S  + + +      ++ IE AL   GI
Sbjct: 34  NTSEPTFPSSFPQNPRNSSSRFLHSHHDSPPLASFIQNLLKFRRDKPTEQIEQALNLIGI 93

Query: 78  IPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYA--WNLMVDVLGKNGRFEQMWNA 135
            P  +LV +VLQ        A  FF+W  +    +P    +N ++++LGK   FE++   
Sbjct: 94  HPNNNLVLQVLQRHRSDWKPAFIFFKWVSKTNNYTPSCEVYNEIINILGKMKCFEELHQV 153

Query: 136 VRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGV--EQDVVAVNSLLSAI 192
           +  M +    ++  TF  +   +  A K +EA+  F      G+  E D  A  +LL  +
Sbjct: 154 LDEMSQRKEFINEETFCILIRRFVAAHKLEEAINIFYRREEFGLDNELDSKAFRTLLMWM 213

Query: 193 CRQEN-QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           CR ++ + +  L   N  K     D  ++ ++L GW   GN  EA + + +         
Sbjct: 214 CRYKHIEEAETLFHRNLNKFRFCRDIKTWNVILNGWCVLGNTHEAKRLWKD--------- 264

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRV-MKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
             ++AY        + K++    + ++  ++ E+C P +  F+  +D L        A+Q
Sbjct: 265 --IIAY--------KCKEIGNCFEVVQWDVEEESCKPDVVIFNCLIDGLCFKKRIPEALQ 314

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGA--FPDSLTYNMIF 368
           ++  M     + +PN+  YN++I  L     ++ V+   + M        P+ +TY+ + 
Sbjct: 315 VFHDMKE--RDCLPNVATYNSLIKHLFKIRRMEKVYELVEDMERRSGDCLPNGVTYSYLL 372

Query: 369 ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 428
           + L   K   EV      M +N    +   C   + + +  D+ +   + W+ +  NG+ 
Sbjct: 373 QSL---KAPEEVPAVLERMERNGCAMSDDICNLILRLYMKWDDLDGLRKTWDEMERNGLG 429

Query: 429 PLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 464
           P   S   ++ G    GR  D  R+ +EM ++ I++
Sbjct: 430 PDRRSYTIMIHGHYENGRTKDAMRYFQEMTSKGIVL 465


>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62930, chloroplastic; Flags: Precursor
 gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/340 (22%), Positives = 159/340 (46%), Gaps = 6/340 (1%)

Query: 92  YDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPT 149
           ++  S AV    R   RG +   + +  +V+ L K G  +   + ++ M++  +   +  
Sbjct: 198 HNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVI 257

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           + +I D+ C     ++A+  F  M   G+  +VV  NSL+  +C     +  +    + +
Sbjct: 258 YTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMI 317

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
           ++ ++P+  +F+ L++ + KEG + EA K + EM++R   +P+ +  Y + +       +
Sbjct: 318 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR-SIDPD-IFTYSSLINGFCMHDR 375

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY 329
           +DEA     +M  ++CFP +  ++  +    K       ++L+  M   G  L+ N + Y
Sbjct: 376 LDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRG--LVGNTVTY 433

Query: 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389
           N +I  L    D D   + F +MV  G  PD +TY+++ + L K  ++ +    F  + K
Sbjct: 434 NTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQK 493

Query: 390 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
           ++ +P        I  +  A + E   +++  +   G+ P
Sbjct: 494 SKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKP 533



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 84/371 (22%), Positives = 161/371 (43%), Gaps = 42/371 (11%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y++N++++   +  +       + ++MK      + T +S+ + YC   +  EAV   D 
Sbjct: 116 YSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQ 175

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEG 231
           M +   + + V  N+L+  +    N+ S A+  ++R V +   PD  ++  ++ G  K G
Sbjct: 176 MFVMEYQPNTVTFNTLIHGLFLH-NKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRG 234

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN------- 284
           +++ A     +M E+ +   + V+ Y T +  L   K V++AL     M  +        
Sbjct: 235 DIDLALSLLKKM-EKGKIEAD-VVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVT 292

Query: 285 ------CF----------------------PTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
                 C                       P +  FS  +D  VK      A +L+D M+
Sbjct: 293 YNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI 352

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
               +  P++  Y+++I   C +D +D     F+ M+    FP+ +TYN + +   K KR
Sbjct: 353 KRSID--PDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKR 410

Query: 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 436
           V E  + F EM +       +   T I  L  A + ++A +I+  ++ +G+ P   + + 
Sbjct: 411 VEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSI 470

Query: 437 LLVGLRNLGRL 447
           LL GL   G+L
Sbjct: 471 LLDGLCKYGKL 481



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 83/384 (21%), Positives = 164/384 (42%), Gaps = 8/384 (2%)

Query: 98  AVDFFRWAGRGQRL-SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFD 155
           AVD F    + + L S   +N ++  + K  +F+ + +    M+   +   L ++  + +
Sbjct: 64  AVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILIN 123

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VD 214
            +C   +   A+     M   G E D+V ++SLL+  C  + + S A+  ++++  +   
Sbjct: 124 CFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGK-RISEAVALVDQMFVMEYQ 182

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           P+  +F  L+ G        EA      MV R    P+ +  Y T +  L +   +D AL
Sbjct: 183 PNTVTFNTLIHGLFLHNKASEAVALIDRMVAR-GCQPD-LFTYGTVVNGLCKRGDIDLAL 240

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
             L+ M+       +  ++  +D L    +   A+ L+  M   G  + PN++ YN++I 
Sbjct: 241 SLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKG--IRPNVVTYNSLIR 298

Query: 335 LLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
            LCN     +  R    M+     P+ +T++ + +  +K  ++ E EK + EMIK    P
Sbjct: 299 CLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDP 358

Query: 395 TPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 454
                ++ I      D  + A  ++  ++     P   + N L+ G     R+ +     
Sbjct: 359 DIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELF 418

Query: 455 EEMLNRRILIYEVTMHKLKKAFYN 478
            EM  R ++   VT + L +  + 
Sbjct: 419 REMSQRGLVGNTVTYNTLIQGLFQ 442



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 75/337 (22%), Positives = 145/337 (43%), Gaps = 6/337 (1%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  F  +  +     K+D  +   + M    +  D+ + N L++  CR+ +Q   AL  
Sbjct: 79  SIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRR-SQLPLALAV 137

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L ++ K+  +PD  + + LL G+     + EA     +M    E+ P  V  + T +  L
Sbjct: 138 LGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFV-MEYQPNTV-TFNTLIHGL 195

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
               +  EA+  +  M    C P L  +   ++ L K  D   A+ L   M      +  
Sbjct: 196 FLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEK--GKIEA 253

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           ++++Y  +I  LCN  +V++    F +M   G  P+ +TYN +  CL    R  +  +  
Sbjct: 254 DVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLL 313

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
            +MI+ +  P  +  +  I   +   +   A ++++ +++  I P   + + L+ G    
Sbjct: 314 SDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMH 373

Query: 445 GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
            RL + +   E M+++      VT + L K F    R
Sbjct: 374 DRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKR 410



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 73/354 (20%), Positives = 136/354 (38%), Gaps = 37/354 (10%)

Query: 91  SYDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLP 148
           +Y + + A++ F     +G R +   +N ++  L   GR+      +  M E  +  ++ 
Sbjct: 267 NYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVV 326

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF+++ D++   GK  EA   +D M    ++ D+   +SL++  C  +        F   
Sbjct: 327 TFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM 386

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           + K   P+  ++  L++G+ K   VEE  + F EM +R      + + Y T +  L +  
Sbjct: 387 ISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVG--NTVTYNTLIQGLFQAG 444

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL----------------- 311
             D A K  + M  +   P +  +S  LD L K      A+ +                 
Sbjct: 445 DCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYN 504

Query: 312 ---------------WDIMVGIGF-NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
                          WD+   +    + PN+I+Y  +I   C     +     F +M   
Sbjct: 505 IMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKED 564

Query: 356 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 409
           G  P+S TYN +    +++       +   EM    +       +  I ML D 
Sbjct: 565 GTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVINMLHDG 618



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 132/336 (39%), Gaps = 45/336 (13%)

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSF 220
           K D+AV  F  M        +V  N LLSAI +  N+    +    R++ + +  D  S+
Sbjct: 60  KLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKM-NKFDLVISLGERMQNLRISYDLYSY 118

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
            IL+  + +   +  A    G+M+ +  + P+ ++   + L     GK++ EA       
Sbjct: 119 NILINCFCRRSQLPLALAVLGKMM-KLGYEPD-IVTLSSLLNGYCHGKRISEA------- 169

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI-GLLCNN 339
                                       V L D M  + +   PN + +N +I GL  +N
Sbjct: 170 ----------------------------VALVDQMFVMEYQ--PNTVTFNTLIHGLFLHN 199

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
              + V    D+MV  G  PD  TY  +   L K   +        +M K + +   +  
Sbjct: 200 KASEAV-ALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIY 258

Query: 400 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
            T I  L +      A+ ++  +   GI P   + N L+  L N GR SD  R   +M+ 
Sbjct: 259 TTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIE 318

Query: 460 RRILIYEVTMHKLKKAFYNESR--SMRDIFDSLERR 493
           R+I    VT   L  AF  E +      ++D + +R
Sbjct: 319 RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR 354


>gi|302780731|ref|XP_002972140.1| hypothetical protein SELMODRAFT_450859 [Selaginella moellendorffii]
 gi|300160439|gb|EFJ27057.1| hypothetical protein SELMODRAFT_450859 [Selaginella moellendorffii]
          Length = 482

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 164/353 (46%), Gaps = 11/353 (3%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE-DGVLSLPTFASIFDSYCGAGKYDE 165
           R Q    +  N+ +D L K+   ++  +  + +K+  G+++  ++  + +++C   + DE
Sbjct: 60  RQQLRERHLVNITIDSLCKSDMIDKAESWFQELKDFRGLVNTVSYNILINAFCKTKRIDE 119

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA---I 222
           A+  F  M   G        N+L+  +CR E +   A +F  R+  +    G SF    I
Sbjct: 120 AIQLFGEMKAPGCAPSTSTYNTLIGGLCRVE-RLGEAQQFYERL--LSSGAGASFITYNI 176

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L++G+ K   V EA +   E+V R          Y   + TL +  ++ EA  F   M+ 
Sbjct: 177 LVDGFCKADRVPEAVELLNELVAR--GGVVTSAPYNCIIDTLFKKGKIHEAELFFNRMEK 234

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
           +   P    F+  +D L K N    A +++   +  G +  P++++ + ++   C    V
Sbjct: 235 DGVRPQEVTFTVLIDGLCKANRVARAKEIFFSYLESGGS--PSVVICSCLMDGFCKYGGV 292

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
           D  +R F+ M   G  P+ ++ N++   L K KR+ +  + F E++K + +P  +  +T 
Sbjct: 293 DEAWRIFELMTNRGCTPNDVSCNILINGLCKAKRLSQAREVFEEVVKRQAKPDVVTYSTF 352

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 455
           +  L  A   + A ++   +++ G  P       L+ GL +LGRL + R+  E
Sbjct: 353 MDGLCRAHRVDQARQVLCMLVDKGGTPDVVMYTALISGLCSLGRLDEARKVFE 405



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 150/349 (42%), Gaps = 17/349 (4%)

Query: 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK 210
           A I    C  GK DEA+  F     H +  D   + + L  + R+ ++  RA E L  VK
Sbjct: 3   ADIVLCLCHVGKLDEALELF-----HSLVSDGCGLPADL--LVRELSKAGRAEECLKVVK 55

Query: 211 KIVDP----DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
            ++D     +     I ++   K   +++A   F E+ + F     + ++Y   +    +
Sbjct: 56  LMLDRQQLRERHLVNITIDSLCKSDMIDKAESWFQELKD-FR-GLVNTVSYNILINAFCK 113

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNL 326
            K++DEA++    MK   C P+   ++  +  L ++     A Q ++ ++  G     + 
Sbjct: 114 TKRIDEAIQLFGEMKAPGCAPSTSTYNTLIGGLCRVERLGEAQQFYERLLSSGAG--ASF 171

Query: 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 386
           I YN ++   C  D V       +++V  G    S  YN I + L K  ++HE E FF+ 
Sbjct: 172 ITYNILVDGFCKADRVPEAVELLNELVARGGVVTSAPYNCIIDTLFKKGKIHEAELFFNR 231

Query: 387 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 446
           M K+  +P  +     I  L  A+    A EI+   LE+G  P     + L+ G    G 
Sbjct: 232 MEKDGVRPQEVTFTVLIDGLCKANRVARAKEIFFSYLESGGSPSVVICSCLMDGFCKYGG 291

Query: 447 LSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLERR 493
           + +  R  E M NR     +V+ + L        R    R++F+ + +R
Sbjct: 292 VDEAWRIFELMTNRGCTPNDVSCNILINGLCKAKRLSQAREVFEEVVKR 340



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 117/292 (40%), Gaps = 45/292 (15%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDE 165
           RG  ++   +N ++D L K G+  +       M++DGV     TF  + D  C A +   
Sbjct: 200 RGGVVTSAPYNCIIDTLFKKGKIHEAELFFNRMEKDGVRPQEVTFTVLIDGLCKANRVAR 259

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQE--NQTSRALEFLNRVKKIVDPDGDSFAIL 223
           A   F      G    VV  + L+   C+    ++  R  E +    +   P+  S  IL
Sbjct: 260 AKEIFFSYLESGGSPSVVICSCLMDGFCKYGGVDEAWRIFELMT--NRGCTPNDVSCNIL 317

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           + G  K   + +A + F E+V+R +  P+ V+ Y TF+  L R  +VD+A +        
Sbjct: 318 INGLCKAKRLSQAREVFEEVVKR-QAKPD-VVTYSTFMDGLCRAHRVDQARQ-------- 367

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
                         +L  L D                   P+++MY A+I  LC+   +D
Sbjct: 368 --------------VLCMLVDKGGT---------------PDVVMYTALISGLCSLGRLD 398

Query: 344 NVFRFFD-QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
              + F+  M   G  P++ T N++        R+ E  + F   ++   QP
Sbjct: 399 EARKVFEVDMRAAGCAPNNFTCNVLVNGFGLAGRLDEARELFQRFVERGVQP 450


>gi|296081012|emb|CBI18516.3| unnamed protein product [Vitis vinifera]
          Length = 967

 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/357 (22%), Positives = 163/357 (45%), Gaps = 32/357 (8%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N++++ L   G  ++  N ++ M+E+G V ++ T+ ++ + YC  G+Y  A+   D M 
Sbjct: 236 FNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMI 295

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNV 233
             G+E DV   N  +  +C   +++++A   L +++K ++ P+  ++  L+ G+ KEG +
Sbjct: 296 CKGIEADVCTYNVFIDNLC-TNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKI 354

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC-FPTLKFF 292
             A + F EM  +F+ +P  V  Y   +         +EAL+ L  M+            
Sbjct: 355 GVAAQVFNEM-SKFDLSPNCV-TYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEHGNV 412

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIG--------------------FNLMPNLIMYNAV 332
           + A+ +   +N + H    +   V +                       L+PN I Y+ +
Sbjct: 413 TEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCI 472

Query: 333 IGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 392
           I    +  D  N F FFD M+  G  P   TY  + + L K   + E +KF + +    +
Sbjct: 473 INGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRL---HY 529

Query: 393 QPTPLNCATAITMLLDADEP---EIAIEIWNYILENGILPLEASANELLVGLRNLGR 446
            P  ++     T+L +  +      A+ +++ +++N +LP   + + LL GL   G+
Sbjct: 530 IPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGK 586



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 145/365 (39%), Gaps = 20/365 (5%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G     +  N++V  L ++G+  +    +  M   G++ +  T+  I + Y   G    A
Sbjct: 426 GHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNA 485

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDP-DGDSFAILLE 225
              FD M   G         SLL  +C+  N    A +FLNR+  I    D   +  LL 
Sbjct: 486 FSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLV-EAKKFLNRLHYIPGAVDSVMYNTLLA 544

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR-GKQVDEALKFLRVMKGEN 284
              K GN+ EA   F +MV+       +   Y + L  L R GK V     F   M    
Sbjct: 545 ETCKSGNLHEAVALFDKMVQNNVLPDSYT--YSSLLTGLCRKGKAVTAVCLFGTAMGRGT 602

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
            FP    ++  +D L K      A   ++ M+  G    P+ + +NA+I        +  
Sbjct: 603 LFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKG--TCPDTVAFNAIIDSCSRRGQMMK 660

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
              FF  M + G  P+  TYN++     K + +      +  M++    P  L   + I 
Sbjct: 661 ANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLIL 720

Query: 405 MLLDADEPEIAIE------------IWNYILENGILPLEASANELLVGLRNLGRLSDVRR 452
            L  +  P++ ++            + + +LENG++P  A    L+ G+  +G +    +
Sbjct: 721 GLSKSGIPDLGVKLLGKMIMEESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFK 780

Query: 453 FAEEM 457
             +EM
Sbjct: 781 LKDEM 785



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/274 (20%), Positives = 109/274 (39%), Gaps = 4/274 (1%)

Query: 184 AVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
           +  S+L  +C+    +      L     + +     F +L+  + KEG ++ A +TF E+
Sbjct: 130 SAKSILRHLCQMGIGSKSIFGALMDTYPLCNSIPSVFDLLIRVYLKEGMIDYAVETF-EL 188

Query: 244 VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303
           V    + P  V      L ++++ K+ +      R M  +   P +  F+  ++ L    
Sbjct: 189 VGLVGFKPS-VYTCNMILASMVKDKRTELVWSLFREMSDKGICPNVGTFNILINGLCVEG 247

Query: 304 DSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLT 363
           +   A  L   M   GF  +P ++ YN ++   C            D M+  G   D  T
Sbjct: 248 NLKKAGNLLKQMEENGF--VPTIVTYNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCT 305

Query: 364 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 423
           YN+  + L  N R  +      +M K    P  +   T I   +   +  +A +++N + 
Sbjct: 306 YNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMS 365

Query: 424 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           +  + P   + N L+ G  ++G   +  R  + M
Sbjct: 366 KFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHM 399



 Score = 46.2 bits (108), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 86/380 (22%), Positives = 138/380 (36%), Gaps = 68/380 (17%)

Query: 97  SAVDFFRWA-GRGQRLSPYA-WNLMVDVLGKNGR-------FEQMWNAVRVMKEDGVLSL 147
           +AV  F  A GRG     +  +  +VD L K G        FE+M      MK+      
Sbjct: 589 TAVCLFGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEM------MKKGTCPDT 642

Query: 148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN 207
             F +I DS    G+  +A   F  M   GV  ++   N LL    +++        +  
Sbjct: 643 VAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYST 702

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER------FEWNPEHVLAYETFL 261
            +++ + PD  +F  L+ G  K G  +   K  G+M+         E     V+      
Sbjct: 703 MMREGIFPDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEESTVVLHEMLENGVIPKHAQY 762

Query: 262 ITLIRG-------------KQVDEALKF--------------LRVMKGENC--------- 285
           ITLI G             K   EAL F              L   K E+          
Sbjct: 763 ITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGKTEDAMLVLDHMLR 822

Query: 286 ---FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
               PT+  F+  +    +      A++L  +M   G  L  +++ YN +I  +C N D 
Sbjct: 823 MRLLPTIATFTTLMHRFCRDAKIAEALKLKGVMELCGLKL--DVVAYNVLIMGMCANGDS 880

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
              F  +++M      P+  TY ++ + +     + + EK   ++     Q   L     
Sbjct: 881 AAAFELYEEMRHRDLCPNITTYAVLVDAISAANNLIQGEKLLTDL-----QERGLISWGG 935

Query: 403 ITMLLDADEPEIAIEIWNYI 422
            T  LD  E  +A+   NYI
Sbjct: 936 STQHLD-KELTVAMGKLNYI 954


>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
           and contains a RepB PF|01051 protein and multiple PPR
           PF|01535 repeats [Arabidopsis thaliana]
          Length = 613

 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/340 (22%), Positives = 159/340 (46%), Gaps = 6/340 (1%)

Query: 92  YDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPT 149
           ++  S AV    R   RG +   + +  +V+ L K G  +   + ++ M++  +   +  
Sbjct: 182 HNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVI 241

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           + +I D+ C     ++A+  F  M   G+  +VV  NSL+  +C     +  +    + +
Sbjct: 242 YTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMI 301

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
           ++ ++P+  +F+ L++ + KEG + EA K + EM++R   +P+ +  Y + +       +
Sbjct: 302 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR-SIDPD-IFTYSSLINGFCMHDR 359

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY 329
           +DEA     +M  ++CFP +  ++  +    K       ++L+  M   G  L+ N + Y
Sbjct: 360 LDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRG--LVGNTVTY 417

Query: 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389
           N +I  L    D D   + F +MV  G  PD +TY+++ + L K  ++ +    F  + K
Sbjct: 418 NTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQK 477

Query: 390 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
           ++ +P        I  +  A + E   +++  +   G+ P
Sbjct: 478 SKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKP 517



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 84/371 (22%), Positives = 161/371 (43%), Gaps = 42/371 (11%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y++N++++   +  +       + ++MK      + T +S+ + YC   +  EAV   D 
Sbjct: 100 YSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQ 159

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEG 231
           M +   + + V  N+L+  +    N+ S A+  ++R V +   PD  ++  ++ G  K G
Sbjct: 160 MFVMEYQPNTVTFNTLIHGLFLH-NKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRG 218

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN------- 284
           +++ A     +M E+ +   + V+ Y T +  L   K V++AL     M  +        
Sbjct: 219 DIDLALSLLKKM-EKGKIEAD-VVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVT 276

Query: 285 ------CF----------------------PTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
                 C                       P +  FS  +D  VK      A +L+D M+
Sbjct: 277 YNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI 336

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
               +  P++  Y+++I   C +D +D     F+ M+    FP+ +TYN + +   K KR
Sbjct: 337 KRSID--PDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKR 394

Query: 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 436
           V E  + F EM +       +   T I  L  A + ++A +I+  ++ +G+ P   + + 
Sbjct: 395 VEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSI 454

Query: 437 LLVGLRNLGRL 447
           LL GL   G+L
Sbjct: 455 LLDGLCKYGKL 465



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 83/384 (21%), Positives = 164/384 (42%), Gaps = 8/384 (2%)

Query: 98  AVDFFRWAGRGQRL-SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFD 155
           AVD F    + + L S   +N ++  + K  +F+ + +    M+   +   L ++  + +
Sbjct: 48  AVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILIN 107

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VD 214
            +C   +   A+     M   G E D+V ++SLL+  C  + + S A+  ++++  +   
Sbjct: 108 CFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGK-RISEAVALVDQMFVMEYQ 166

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           P+  +F  L+ G        EA      MV R    P+ +  Y T +  L +   +D AL
Sbjct: 167 PNTVTFNTLIHGLFLHNKASEAVALIDRMVAR-GCQPD-LFTYGTVVNGLCKRGDIDLAL 224

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
             L+ M+       +  ++  +D L    +   A+ L+  M   G  + PN++ YN++I 
Sbjct: 225 SLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKG--IRPNVVTYNSLIR 282

Query: 335 LLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
            LCN     +  R    M+     P+ +T++ + +  +K  ++ E EK + EMIK    P
Sbjct: 283 CLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDP 342

Query: 395 TPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 454
                ++ I      D  + A  ++  ++     P   + N L+ G     R+ +     
Sbjct: 343 DIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELF 402

Query: 455 EEMLNRRILIYEVTMHKLKKAFYN 478
            EM  R ++   VT + L +  + 
Sbjct: 403 REMSQRGLVGNTVTYNTLIQGLFQ 426



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 75/337 (22%), Positives = 145/337 (43%), Gaps = 6/337 (1%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  F  +  +     K+D  +   + M    +  D+ + N L++  CR+ +Q   AL  
Sbjct: 63  SIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRR-SQLPLALAV 121

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L ++ K+  +PD  + + LL G+     + EA     +M    E+ P  V  + T +  L
Sbjct: 122 LGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFV-MEYQPNTV-TFNTLIHGL 179

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
               +  EA+  +  M    C P L  +   ++ L K  D   A+ L   M      +  
Sbjct: 180 FLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEK--GKIEA 237

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           ++++Y  +I  LCN  +V++    F +M   G  P+ +TYN +  CL    R  +  +  
Sbjct: 238 DVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLL 297

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
            +MI+ +  P  +  +  I   +   +   A ++++ +++  I P   + + L+ G    
Sbjct: 298 SDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMH 357

Query: 445 GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
            RL + +   E M+++      VT + L K F    R
Sbjct: 358 DRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKR 394



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 73/354 (20%), Positives = 136/354 (38%), Gaps = 37/354 (10%)

Query: 91  SYDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLP 148
           +Y + + A++ F     +G R +   +N ++  L   GR+      +  M E  +  ++ 
Sbjct: 251 NYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVV 310

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF+++ D++   GK  EA   +D M    ++ D+   +SL++  C  +        F   
Sbjct: 311 TFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM 370

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           + K   P+  ++  L++G+ K   VEE  + F EM +R      + + Y T +  L +  
Sbjct: 371 ISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVG--NTVTYNTLIQGLFQAG 428

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL----------------- 311
             D A K  + M  +   P +  +S  LD L K      A+ +                 
Sbjct: 429 DCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYN 488

Query: 312 ---------------WDIMVGIGF-NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
                          WD+   +    + PN+I+Y  +I   C     +     F +M   
Sbjct: 489 IMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKED 548

Query: 356 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 409
           G  P+S TYN +    +++       +   EM    +       +  I ML D 
Sbjct: 549 GTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVINMLHDG 602



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 132/336 (39%), Gaps = 45/336 (13%)

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSF 220
           K D+AV  F  M        +V  N LLSAI +  N+    +    R++ + +  D  S+
Sbjct: 44  KLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKM-NKFDLVISLGERMQNLRISYDLYSY 102

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
            IL+  + +   +  A    G+M+ +  + P+ ++   + L     GK++ EA       
Sbjct: 103 NILINCFCRRSQLPLALAVLGKMM-KLGYEPD-IVTLSSLLNGYCHGKRISEA------- 153

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI-GLLCNN 339
                                       V L D M  + +   PN + +N +I GL  +N
Sbjct: 154 ----------------------------VALVDQMFVMEYQ--PNTVTFNTLIHGLFLHN 183

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
              + V    D+MV  G  PD  TY  +   L K   +        +M K + +   +  
Sbjct: 184 KASEAV-ALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIY 242

Query: 400 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
            T I  L +      A+ ++  +   GI P   + N L+  L N GR SD  R   +M+ 
Sbjct: 243 TTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIE 302

Query: 460 RRILIYEVTMHKLKKAFYNESR--SMRDIFDSLERR 493
           R+I    VT   L  AF  E +      ++D + +R
Sbjct: 303 RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR 338


>gi|413915825|gb|AFW21589.1| hypothetical protein ZEAMMB73_481763 [Zea mays]
 gi|413923991|gb|AFW63923.1| hypothetical protein ZEAMMB73_685382 [Zea mays]
          Length = 953

 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 158/363 (43%), Gaps = 15/363 (4%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSY----CGAGK 162
           RG  L    +  ++D L K G    M  A++V +E    +L   A +++ +    C  GK
Sbjct: 533 RGLLLDHVNYATLMDGLFKTG---NMPAALKVGQELMERNLSPDAVVYNVFINCLCRLGK 589

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFA 221
           + EA      M   G+E D    N+++SA CR+ N TS+AL+ LN +K   + P+  ++ 
Sbjct: 590 FSEAKSFLKEMRNTGLEPDQATYNTMISAQCREGN-TSKALKLLNEMKWSSIKPNLITYT 648

Query: 222 ILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
            L+ G  + G VE+A     EM    F   P   L Y   L      +     L+   +M
Sbjct: 649 TLVVGLLEAGVVEKAKYLLNEMASAGFTPTP---LTYRRVLQACSGSRSPYVILEVHELM 705

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
            G      +  ++  + +L     +  A  + D M+G G  + P+ I +NA+I   C + 
Sbjct: 706 MGAGLHADITVYNTLVHVLCCHGMTRKATIVLDEMLGRG--IAPDTITFNALILGHCKSS 763

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
            +DN F  + QM+  G  P+  T+N +   L    R+ E +    EM K   +P  L   
Sbjct: 764 HLDNAFATYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADTVICEMKKMGLEPNNLTYD 823

Query: 401 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
             +T          A+ ++  ++  G +P  ++ N L+      G ++  +    EM  R
Sbjct: 824 ILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTYNSLISDFAKAGMMNQAKELFSEMKRR 883

Query: 461 RIL 463
            +L
Sbjct: 884 GVL 886



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 83/378 (21%), Positives = 149/378 (39%), Gaps = 42/378 (11%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAG 161
           R   +G  L    +N +V     +G  +  W     MK DGV  S+ T  ++   YC   
Sbjct: 214 RMTTQGLSLDVVGYNTLVAGFFYSGDADAAWEVAERMKADGVEPSVVTHTTLIGEYCKMK 273

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSF 220
           + +EA   ++ M   GV  DVV +++L+  +CR + + S A      + KI V P+  ++
Sbjct: 274 RIEEAFTLYEGMVRSGVLPDVVTLSALVDGLCR-DGRFSEAYALFREMDKIGVAPNHVTY 332

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
              ++   K   V E+    GEMV R       ++ Y T +  L +  +++EA   LR  
Sbjct: 333 CTFIDSLAKVQRVNESLGLLGEMVSR--GVAMDLVMYTTVMDRLGKEGKIEEAKDVLR-- 388

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
                                     HA  L D       N+ PN + Y  ++   C   
Sbjct: 389 --------------------------HA--LSD-------NITPNCVTYTVLVDAHCRAG 413

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
           ++D   +   QM      P+ +T++ I   L+K   + +   +  +M  +   P  +   
Sbjct: 414 NIDGAEQMLLQMEEKSVSPNVVTFSSILNGLVKRGCIAKAAGYMRKMKDSGIAPNVVTYG 473

Query: 401 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           T I         E A++++  +L  G+       + L+ GLR  G + +     ++M  R
Sbjct: 474 TLIDGFFKCQGQEAALDVYRDMLHEGVEANNFIVDSLVNGLRKNGNIEEAEALFKDMGER 533

Query: 461 RILIYEVTMHKLKKAFYN 478
            +L+  V    L    + 
Sbjct: 534 GLLLDHVNYATLMDGLFK 551



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/376 (19%), Positives = 154/376 (40%), Gaps = 42/376 (11%)

Query: 119 MVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           +VD L ++GRF + +   R M + GV  +  T+ +  DS     + +E++     M   G
Sbjct: 300 LVDGLCRDGRFSEAYALFREMDKIGVAPNHVTYCTFIDSLAKVQRVNESLGLLGEMVSRG 359

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFL-NRVKKIVDPDGDSFAILLEGWEKEGNVEEA 236
           V  D+V   +++  + + E +   A + L + +   + P+  ++ +L++   + GN++ A
Sbjct: 360 VAMDLVMYTTVMDRLGK-EGKIEEAKDVLRHALSDNITPNCVTYTVLVDAHCRAGNIDGA 418

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
            +   +M E+   +P +V+ + + L  L++   + +A  ++R MK     P +  +   +
Sbjct: 419 EQMLLQMEEK-SVSP-NVVTFSSILNGLVKRGCIAKAAGYMRKMKDSGIAPNVVTYGTLI 476

Query: 297 DILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM---- 352
           D   K      A+ ++  M+  G     N  + ++++  L  N +++     F  M    
Sbjct: 477 DGFFKCQGQEAALDVYRDMLHEGVE--ANNFIVDSLVNGLRKNGNIEEAEALFKDMGERG 534

Query: 353 ----------VFHGAF---------------------PDSLTYNMIFECLIKNKRVHEVE 381
                     +  G F                     PD++ YN+   CL +  +  E +
Sbjct: 535 LLLDHVNYATLMDGLFKTGNMPAALKVGQELMERNLSPDAVVYNVFINCLCRLGKFSEAK 594

Query: 382 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 441
            F  EM     +P      T I+          A+++ N +  + I P   +   L+VGL
Sbjct: 595 SFLKEMRNTGLEPDQATYNTMISAQCREGNTSKALKLLNEMKWSSIKPNLITYTTLVVGL 654

Query: 442 RNLGRLSDVRRFAEEM 457
              G +   +    EM
Sbjct: 655 LEAGVVEKAKYLLNEM 670


>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
          Length = 650

 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 145/327 (44%), Gaps = 18/327 (5%)

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M   G++ DVV  N+L+ A+CR     +  L       + V PD  +F  L++G+ +EG+
Sbjct: 80  MGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGS 139

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG----KQVDEALKFLRVMKGENCFPT 288
           +E A +    M+E          A +  +  LI G     +V++AL +++    +   P 
Sbjct: 140 IEAALRVKARMLEM------GCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPD 193

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
              ++  ++ L + +   HA+++ D+MV  G +  P++  YN V+  LC N  ++     
Sbjct: 194 QITYNTFVNGLCQNDHVGHALKVMDVMVQEGHD--PDVFTYNIVVNCLCKNGQLEEAKGI 251

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
            +QMV  G  PD  T+N +   L    R+ E      ++      P        I  L  
Sbjct: 252 LNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCK 311

Query: 409 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN----RRILI 464
             +P +A+ ++  +  +G  P E + N L+  L +LG+L       ++M +    R  + 
Sbjct: 312 VGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTIT 371

Query: 465 YEVTMHKLKKAFYNESRSMRDIFDSLE 491
           Y   +  L K    E     ++FD ++
Sbjct: 372 YNTIIDGLCKKMRIE--EAEEVFDQMD 396



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 151/345 (43%), Gaps = 7/345 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N  V+ L +N         + VM ++G    + T+  + +  C  G+ +EA    + M
Sbjct: 196 TYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQM 255

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
              G   D+   N+L++A+C   N+   AL+   +V  K V PD  +F IL+    K G+
Sbjct: 256 VDRGCLPDITTFNTLIAALC-TGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGD 314

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
              A + F EM +     P+ V  Y T +  L    ++ +AL  L+ M+   C  +   +
Sbjct: 315 PHLALRLFEEM-KNSGCTPDEV-TYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITY 372

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  +D L K      A +++D M   G +   N I +N +I  LC +  +D+ F   +QM
Sbjct: 373 NTIIDGLCKKMRIEEAEEVFDQMDLQGIS--RNAITFNTLIDGLCKDKKIDDAFELINQM 430

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
           +  G  P+++TYN I     K   + +       M  N ++   +   T I  L  A   
Sbjct: 431 ISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRT 490

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           ++A+++   +   G+ P   + N +L  L     + D      EM
Sbjct: 491 QVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREM 535



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 146/350 (41%), Gaps = 8/350 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +N++V+ L KNG+ E+    +  M + G L  + TF ++  + C   + +EA+     
Sbjct: 230 FTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQ 289

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEG 231
           +++ GV  DV   N L++A+C+       AL     +K     PD  ++  L++     G
Sbjct: 290 VTVKGVSPDVYTFNILINALCKV-GDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLG 348

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            + +A     +M       P   + Y T +  L +  +++EA +    M  +        
Sbjct: 349 KLGKALDLLKDM--ESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAIT 406

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           F+  +D L K      A +L + M+  G  L PN I YN+++   C   D+       + 
Sbjct: 407 FNTLIDGLCKDKKIDDAFELINQMISEG--LQPNNITYNSILTHYCKQGDIKKAADILET 464

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M  +G   D +TY  +   L K  R     K    M     +PTP      +  L   + 
Sbjct: 465 MTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNN 524

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGL-RNLGRLSDVRRFAEEMLNR 460
              A+ ++  + E G  P   +   +  GL R  G + +   F  EM+++
Sbjct: 525 IRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDK 574



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 81/397 (20%), Positives = 158/397 (39%), Gaps = 15/397 (3%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP----TFASIFDS 156
           +     RG +     +N ++  L    R  Q+  AV +++E     +     TF ++   
Sbjct: 77  YSEMGARGIKPDVVTFNTLMKALC---RAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQG 133

Query: 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDP 215
           +   G  + A+     M   G     V VN L++  C+   +   AL ++ + +    +P
Sbjct: 134 FVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKL-GRVEDALGYIQQEIADGFEP 192

Query: 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK 275
           D  ++   + G  +  +V  A K    MV+  E +   V  Y   +  L +  Q++EA  
Sbjct: 193 DQITYNTFVNGLCQNDHVGHALKVMDVMVQ--EGHDPDVFTYNIVVNCLCKNGQLEEAKG 250

Query: 276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGL 335
            L  M    C P +  F+  +  L   N    A+ L   +   G +  P++  +N +I  
Sbjct: 251 ILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVS--PDVYTFNILINA 308

Query: 336 LCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 395
           LC   D     R F++M   G  PD +TYN + + L    ++ +      +M       +
Sbjct: 309 LCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRS 368

Query: 396 PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 455
            +   T I  L      E A E+++ +   GI     + N L+ GL    ++ D      
Sbjct: 369 TITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELIN 428

Query: 456 EMLNRRILIYEVTMHKLKKAFYNES--RSMRDIFDSL 490
           +M++  +    +T + +   +  +   +   DI +++
Sbjct: 429 QMISEGLQPNNITYNSILTHYCKQGDIKKAADILETM 465


>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
 gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
          Length = 616

 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/387 (22%), Positives = 172/387 (44%), Gaps = 13/387 (3%)

Query: 111 LSP--YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAV 167
           LSP  Y  +++++   +  R +  ++ + +++K    L++ TF ++ +  C  GK+ +AV
Sbjct: 153 LSPDTYTLHMLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAV 212

Query: 168 MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW 227
             FD M   G + DV    ++++ +C+     + A  F    +    PD  +++ +++  
Sbjct: 213 ELFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSL 272

Query: 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
            K+  V EA   F  M  + +    ++  Y + +  L    +  EA   L  M   N  P
Sbjct: 273 CKDRRVNEALDIFSYM--KAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMP 330

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFR 347
            +  FS  ++I  K  +   A  +   M  +G    PN++ Y++++       +V    +
Sbjct: 331 NIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVE--PNVVTYSSLMNGYSLQAEVVEARK 388

Query: 348 FFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 407
            FD M+  G  PD  +YN++     K KR+ E ++ F+EMI     P  ++  T I  L 
Sbjct: 389 LFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLC 448

Query: 408 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNRRIL 463
                  A +++  +L NG LP   + + LL G    G L+   R    M    L   ++
Sbjct: 449 QLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMV 508

Query: 464 IYEVTMHKLKKAFYNESRSMRDIFDSL 490
           +Y + +  + K+     +  R +F  L
Sbjct: 509 MYNILIDAMCKS--RNLKEARKLFSEL 533



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 158/384 (41%), Gaps = 43/384 (11%)

Query: 96  SSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASI 153
             AV+ F     RG +   + +  +++ L K G         R M E G    + T+++I
Sbjct: 209 GQAVELFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTI 268

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI- 212
            DS C   + +EA+  F  M   G+  ++   NSL+  +C   ++   A   LN +  + 
Sbjct: 269 IDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLC-NFSRWREASAMLNEMMSLN 327

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
           + P+  +F++L+  + KEGNV EA      M E     P +V+ Y + +       +V E
Sbjct: 328 IMPNIVTFSLLINIFCKEGNVFEARGVLKTMTE-MGVEP-NVVTYSSLMNGYSLQAEVVE 385

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAV 332
           A K   VM  + C P +  ++  ++   K      A QL++ M+  G  L P+++ YN +
Sbjct: 386 ARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQG--LTPDIVSYNTL 443

Query: 333 IGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTY---------------------------- 364
           I  LC    +      F  M+ +G  PD  TY                            
Sbjct: 444 IDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYL 503

Query: 365 -------NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 417
                  N++ + + K++ + E  K F E+     QP      T I  L      + A+E
Sbjct: 504 KPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALE 563

Query: 418 IWNYILENGILPLEASANELLVGL 441
            +  + E+G  P E S N ++ G 
Sbjct: 564 AFRNMEEDGCPPNEFSYNVIIRGF 587



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 145/334 (43%), Gaps = 8/334 (2%)

Query: 98  AVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           A+D F +  + + +SP  + +N ++  L    R+ +    +  M    ++ ++ TF+ + 
Sbjct: 281 ALDIFSYM-KAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLI 339

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD 214
           + +C  G   EA      M+  GVE +VV  +SL++    Q         F   + K   
Sbjct: 340 NIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCK 399

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           PD  S+ IL+ G+ K   + EA + F EM+ +    P+ +++Y T +  L +  ++ EA 
Sbjct: 400 PDVFSYNILINGYCKAKRIGEAKQLFNEMIHQ-GLTPD-IVSYNTLIDGLCQLGRLREAH 457

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
              + M      P L  +S  LD   K      A +L+  M      L PN++MYN +I 
Sbjct: 458 DLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQST--YLKPNMVMYNILID 515

Query: 335 LLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
            +C + ++    + F ++   G  P+   Y  I   L K   + E  + F  M ++   P
Sbjct: 516 AMCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPP 575

Query: 395 TPLNCATAITMLLDADEPEIAIEIWNYILENGIL 428
              +    I   L   +   A+++   + E G +
Sbjct: 576 NEFSYNVIIRGFLQHKDESRAVQLIGEMREKGFV 609


>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
          Length = 568

 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 162/377 (42%), Gaps = 14/377 (3%)

Query: 91  SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-- 148
           S   P+ A++  R   R   ++   +N ++      GR +   + +R M+E G ++ P  
Sbjct: 166 SAGKPARALELLRQMPRPNAVT---YNTVIAGFCSRGRVQAALDIMREMRERGGIA-PNQ 221

Query: 149 -TFASIFDSYCGAGKYDEAVMSFDVMSMHG-VEQDVVAVNSLLSAICRQENQTSRALEFL 206
            T+ ++   +C  G+ DEAV  FD M   G V+ + V  N+L+   C Q  +   AL + 
Sbjct: 222 YTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQ-GKLDTALLYR 280

Query: 207 NR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
           +R V++ V     ++ +L+     +G   EA +   EM  +       V  Y   +    
Sbjct: 281 DRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGK--GLALDVFTYNILINGHC 338

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN 325
           +   V +AL+    M       T+  +++ +  L K        +L+D  V  G    P+
Sbjct: 339 KEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIR--PD 396

Query: 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 385
           L++YNA+I     + ++D  F    +M      PD +TYN +   L    RV E  K   
Sbjct: 397 LVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLID 456

Query: 386 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
           EM K   QP  +   T I+      + + A+ I N ++  G  P   + N L+ GL   G
Sbjct: 457 EMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNG 516

Query: 446 RLSDVRRFAEEMLNRRI 462
           +  D     +EM+   I
Sbjct: 517 QGDDAENMVKEMVENGI 533



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 151/352 (42%), Gaps = 16/352 (4%)

Query: 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204
           L   TF  +    C AGK   A+     M       + V  N++++  C +  +   AL+
Sbjct: 152 LCTTTFNIMLRHLCSAGKPARALELLRQMP----RPNAVTYNTVIAGFCSR-GRVQAALD 206

Query: 205 FLN--RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI 262
            +   R +  + P+  ++  ++ GW K G V+EA K F EM+ + E  PE V+ Y   + 
Sbjct: 207 IMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVM-YNALIG 265

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL 322
                 ++D AL +   M       T+  ++  +  L      T A +L + M G G  L
Sbjct: 266 GYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAL 325

Query: 323 MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
             ++  YN +I   C   +V      F+ M   G     +TY  +   L K  +V E +K
Sbjct: 326 --DVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDK 383

Query: 383 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 442
            F E ++   +P  +     I     +   + A EI   + +  I P + + N L+ GL 
Sbjct: 384 LFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLC 443

Query: 443 NLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMR-DIFDSLERR 493
            LGR+ + R+  +EM  R I    VT + L   +     SM+ D+ D+L  R
Sbjct: 444 LLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGY-----SMKGDVKDALRIR 490



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 128/313 (40%), Gaps = 40/313 (12%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAG 161
           R   RG  ++   +NL+V  L  +GR  + +  V  M   G+ L + T+  + + +C  G
Sbjct: 282 RMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTYNILINGHCKEG 341

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221
              +A+  F+ MS  GV   VV   SL+ A+ ++         F   V++ + PD   + 
Sbjct: 342 NVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYN 401

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L+      GN++ A +  GEM E+    P+ V  Y T +  L    +VDEA K      
Sbjct: 402 ALINSHSTSGNIDRAFEIMGEM-EKKRIAPDDV-TYNTLMRGLCLLGRVDEARK------ 453

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
                                        L D M   G  + P+L+ YN +I       D
Sbjct: 454 -----------------------------LIDEMTKRG--IQPDLVTYNTLISGYSMKGD 482

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
           V +  R  ++M+  G  P  LTYN + + L KN +  + E    EM++N   P      +
Sbjct: 483 VKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYIS 542

Query: 402 AITMLLDADEPEI 414
            I  L   DE  I
Sbjct: 543 LIEGLTTEDERAI 555


>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 612

 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/399 (22%), Positives = 171/399 (42%), Gaps = 44/399 (11%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT---FASIFDSYCG 159
           +    G  L+   +  +++ L K G+       +R  + DG L  P    + +I DS C 
Sbjct: 151 KVVALGFHLNKVCYGTLINGLCKVGQTSAALQLLR--RVDGKLVQPNVVMYNTIIDSMCK 208

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGD 218
               +EA   +  M   G+  DVV  ++L+S  C    + + A+   N+ + + ++PD  
Sbjct: 209 VKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCIL-GKLNDAIGLFNKMISEEINPDVY 267

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE-------------------------- 252
           +F+IL++G+ KEG V+EA      M+++    P+                          
Sbjct: 268 TFSILVDGFCKEGRVKEAKNVLAMMMKQ-GIKPDVVTYCSLMDGYCLVKQVNKAKSIFNT 326

Query: 253 --------HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 304
                   +V +Y   +    + K+VDEA+   + M  +N  P +  +++ +D L K   
Sbjct: 327 MAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGK 386

Query: 305 STHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTY 364
            ++A++L D M   G  +  + I YN+++  LC N  VD       +M   G  PD  TY
Sbjct: 387 ISYALKLVDEMHDRG--VPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTY 444

Query: 365 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 424
            ++ + L K  R+ + +  F +++   +  T       I    D D  + A+ + + + +
Sbjct: 445 TILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLFDKALALLSKMED 504

Query: 425 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
           NG +P   +   +++ L          +   EM+ R +L
Sbjct: 505 NGCIPNAKTYEIIILSLFEKDENDMAEKLLREMIARGLL 543



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/324 (21%), Positives = 140/324 (43%), Gaps = 6/324 (1%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F  I  S      Y  A+     M  +G+  D+V  N L++   +  +       F N +
Sbjct: 59  FGKILGSLVKINCYQTAISLHREMEFNGIASDLVTFNILINCFSQLGHTHFSFSVFANIL 118

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE-RFEWNPEHVLAYETFLITLIRGK 268
           KK  +P+  +   L++G   +G + +A     ++V   F  N    + Y T +  L +  
Sbjct: 119 KKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNK---VCYGTLINGLCKVG 175

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           Q   AL+ LR + G+   P +  ++  +D + K+     A  L+  MV  G +  P+++ 
Sbjct: 176 QTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGIS--PDVVT 233

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           Y+A+I   C    +++    F++M+     PD  T++++ +   K  RV E +     M+
Sbjct: 234 YSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMM 293

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
           K   +P  +   + +       +   A  I+N + + G+     S N ++ G   + ++ 
Sbjct: 294 KQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVD 353

Query: 449 DVRRFAEEMLNRRILIYEVTMHKL 472
           +     +EM  + I+   VT + L
Sbjct: 354 EAMNLFKEMHCKNIIPDVVTYNSL 377



 Score = 43.1 bits (100), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 40/195 (20%), Positives = 81/195 (41%), Gaps = 4/195 (2%)

Query: 307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM 366
            A+   D +V +GF+L  N + Y  +I  LC         +   ++      P+ + YN 
Sbjct: 144 QALHFHDKVVALGFHL--NKVCYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNT 201

Query: 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 426
           I + + K K V+E    + EM+     P  +  +  I+      +   AI ++N ++   
Sbjct: 202 IIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEE 261

Query: 427 ILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF--YNESRSMR 484
           I P   + + L+ G    GR+ + +     M+ + I    VT   L   +    +    +
Sbjct: 262 INPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAK 321

Query: 485 DIFDSLERRCKTSQM 499
            IF+++ +   T+ +
Sbjct: 322 SIFNTMAQGGVTANV 336



 Score = 42.4 bits (98), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 71/155 (45%), Gaps = 8/155 (5%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG       +N ++D L KN + ++    +  MK++G+   + T+  + D  C  G+  +
Sbjct: 400 RGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKD 459

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSF-AIL 223
           A   F+ + + G    V     ++   C   +   +AL  L++++     P+  ++  I+
Sbjct: 460 AQNIFEDLLVKGYNITVYTYTVMIQGFC-DNDLFDKALALLSKMEDNGCIPNAKTYEIII 518

Query: 224 LEGWEKEGNVEEANKTFGEMVER---FEWNPEHVL 255
           L  +EK+ N + A K   EM+ R   F W   + L
Sbjct: 519 LSLFEKDEN-DMAEKLLREMIARGLLFGWKKAYCL 552



 Score = 38.9 bits (89), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 29/162 (17%), Positives = 65/162 (40%), Gaps = 4/162 (2%)

Query: 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
           +  N  P +  +  ++G L   +          +M F+G   D +T+N++  C  +    
Sbjct: 48  LNINPTPPIFEFGKILGSLVKINCYQTAISLHREMEFNGIASDLVTFNILINCFSQLGHT 107

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 437
           H     F  ++K  ++P  +   T I  L    +   A+   + ++  G    +     L
Sbjct: 108 HFSFSVFANILKKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNKVCYGTL 167

Query: 438 LVGLRNLGRLSD----VRRFAEEMLNRRILIYEVTMHKLKKA 475
           + GL  +G+ S     +RR   +++   +++Y   +  + K 
Sbjct: 168 INGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKV 209


>gi|242067235|ref|XP_002448894.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
 gi|241934737|gb|EES07882.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
          Length = 796

 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/368 (22%), Positives = 159/368 (43%), Gaps = 5/368 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            + +++D L K    ++     + M + GV  ++ T+  +   Y   G++ E V     M
Sbjct: 241 TYTIVIDGLCKAQVVDRAEGVFQQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEM 300

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
           S HG+E D      LL  +C++   T     F + ++K + PD   + I+L G+  +G +
Sbjct: 301 SAHGLEPDCFTYGLLLDYLCKKGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGAL 360

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            E +     MV     +P H + +        +   + EA+     M+ +   P +  ++
Sbjct: 361 SEMHSFLDLMVGN-GISPNHYI-FNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYA 418

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +D L KL     A   ++ M+  G  + PN++++ +++  LC  D  +     F +MV
Sbjct: 419 TLIDALCKLGRVDDAELKFNQMINEG--VAPNIVVFTSLVYGLCTIDKWEKAGELFFEMV 476

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G  P+ + +N I   L    RV + ++    M +   +P  ++    I       + +
Sbjct: 477 NQGIHPNVVFFNTIMCNLCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTD 536

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 473
            A ++ + +L  G+ P E + N LL G    GR+ D     +EML+  I    VT + + 
Sbjct: 537 EASKLLDIMLSVGLKPNECTYNTLLHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNTIL 596

Query: 474 KAFYNESR 481
              +   R
Sbjct: 597 HGLFKTRR 604



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 76/329 (23%), Positives = 138/329 (41%), Gaps = 15/329 (4%)

Query: 108 GQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
           G  +SP  Y +N++     K     +  +    M++ G+  ++  +A++ D+ C  G+ D
Sbjct: 372 GNGISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVD 431

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
           +A + F+ M   GV  ++V   SL+  +C  +        F   V + + P+   F  ++
Sbjct: 432 DAELKFNQMINEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTIM 491

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK----QVDEALKFLRVM 280
                EG V +A +   +++ER    P+ +++Y      LIRG     + DEA K L +M
Sbjct: 492 CNLCTEGRVMKAQRLI-DLMERVGTRPD-IISYNA----LIRGHCLVGKTDEASKLLDIM 545

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
                 P    ++  L    +      A  ++  M+  G  + P ++ YN ++  L    
Sbjct: 546 LSVGLKPNECTYNTLLHGYCRDGRIDDAYSVFQEMLSNG--ITPVVVTYNTILHGLFKTR 603

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
                   +  M+  G      TYN+I   L KN  V E  K F  +   + Q   +   
Sbjct: 604 RFSEAKELYLNMITSGKQWSIYTYNIILNGLSKNNCVDEALKMFQSLCSKDLQVDIITFN 663

Query: 401 TAITMLLDADEPEIAIEIWNYILENGILP 429
             I  LL     E A+ ++  I  NG++P
Sbjct: 664 IMIGALLKDGRKEDAMNLFATISANGLVP 692



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 83/344 (24%), Positives = 145/344 (42%), Gaps = 17/344 (4%)

Query: 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSR-----ALEFLNRVKK-- 211
           G+   D+A+  FD    H     ++A N LL+A+     + S       +   NR+ +  
Sbjct: 27  GSLSVDDALKLFDEFLHHARPASIIAFNQLLAAVSSASRRGSSSTSELVVSCFNRMIRDC 86

Query: 212 --IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
              V PD  +++IL+  + + G +E     FG ++ +  W    V+     L  L   K+
Sbjct: 87  CSKVAPDVFTYSILVGCFCRMGRLEHGFAAFG-LILKTGWRVNDVVVVNRLLKGLCDAKR 145

Query: 270 VDEALK-FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV-GIGFNLMPNLI 327
           V EA+   LR M    C P +  ++  L      N +  A++L  +M  G   +  PNL+
Sbjct: 146 VGEAMGVLLRRMSELGCTPNVVSYNTLLKGFCDENRAEEALELLHMMADGQVRSCPPNLV 205

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            YN VI        VD  +  F  M   G  P+ +TY ++ + L K + V   E  F +M
Sbjct: 206 SYNTVINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEGVFQQM 265

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
           I    +P  +     I   L   + +  + +   +  +G+ P   +   LL  L   G+ 
Sbjct: 266 IDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYLCKKGKC 325

Query: 448 SDVRRFAEEMLNRRIL----IYEVTMHKL-KKAFYNESRSMRDI 486
           ++ R+  + M+ + I     IY + +H    K   +E  S  D+
Sbjct: 326 TEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFLDL 369



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 93/382 (24%), Positives = 152/382 (39%), Gaps = 44/382 (11%)

Query: 98  AVDFFRWAGRGQRLSPYAWNL--MVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           A+D F    R Q LSP   N   ++D L K GR +        M  +GV  ++  F S+ 
Sbjct: 398 AMDIFNKM-RQQGLSPNVVNYATLIDALCKLGRVDDAELKFNQMINEGVAPNIVVFTSLV 456

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN--QTSRALEFLNRVKKI 212
              C   K+++A   F  M   G+  +VV  N+++  +C +    +  R ++ + RV   
Sbjct: 457 YGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTIMCNLCTEGRVMKAQRLIDLMERVG-- 514

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
             PD  S+  L+ G    G  +EA+K    M+      P     Y T L    R  ++D+
Sbjct: 515 TRPDIISYNALIRGHCLVGKTDEASKLLDIMLS-VGLKPNEC-TYNTLLHGYCRDGRIDD 572

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG-------FNLMPN 325
           A    + M      P +  ++  L  L K    + A +L+  M+  G       +N++ N
Sbjct: 573 AYSVFQEMLSNGITPVVVTYNTILHGLFKTRRFSEAKELYLNMITSGKQWSIYTYNIILN 632

Query: 326 --------------------------LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFP 359
                                     +I +N +IG L  +   ++    F  +  +G  P
Sbjct: 633 GLSKNNCVDEALKMFQSLCSKDLQVDIITFNIMIGALLKDGRKEDAMNLFATISANGLVP 692

Query: 360 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 419
           D  TY +I E LI+   + E +  F EM K+   P  L     +  LL   +   A    
Sbjct: 693 DVTTYRLIAENLIEEGSLEEFDGMFSEMEKSGCAPNSLMLNFLVRRLLLRGDISRAGAYL 752

Query: 420 NYILENGILPLEASANELLVGL 441
           + I E     LEAS   +L+ L
Sbjct: 753 SKIDEKN-FSLEASTTSMLISL 773



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 73/347 (21%), Positives = 139/347 (40%), Gaps = 8/347 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP----TFASIFDSYCGAGKYDEAVMSF 170
           ++N ++       R E+    + +M +  V S P    ++ ++ + +   G+ D+A   F
Sbjct: 168 SYNTLLKGFCDENRAEEALELLHMMADGQVRSCPPNLVSYNTVINGFFTEGQVDKAYNLF 227

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
             M+  G+  +VV    ++  +C+ +        F   + K V P+  ++  L+ G+   
Sbjct: 228 LDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEGVFQQMIDKGVRPNIVTYTCLIHGYLSI 287

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           G  +E  +   EM       P+    Y   L  L +  +  EA K    M  +   P + 
Sbjct: 288 GQWKEVVRMLKEM-SAHGLEPD-CFTYGLLLDYLCKKGKCTEARKLFDSMIRKGIKPDVS 345

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
            +   L         +      D+MVG G +  PN  ++N V         +      F+
Sbjct: 346 IYGIILHGYATKGALSEMHSFLDLMVGNGIS--PNHYIFNIVFCAFAKKAMIGEAMDIFN 403

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
           +M   G  P+ + Y  + + L K  RV + E  F++MI     P  +   + +  L   D
Sbjct: 404 KMRQQGLSPNVVNYATLIDALCKLGRVDDAELKFNQMINEGVAPNIVVFTSLVYGLCTID 463

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           + E A E++  ++  GI P     N ++  L   GR+   +R  + M
Sbjct: 464 KWEKAGELFFEMVNQGIHPNVVFFNTIMCNLCTEGRVMKAQRLIDLM 510


>gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa]
 gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa]
          Length = 915

 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 141/295 (47%), Gaps = 16/295 (5%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           A + +V+ L + G+    ++ V  +K+ G + SL  + ++ +S C  GK+DEA + F  M
Sbjct: 333 ALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFVYNALINSLCKDGKFDEAELLFKEM 392

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-----VKKIVDPDGDSFAILLEGWE 228
              G+  + V  + L+ + CR+  +   A+ FL +     +K  V P    +  L+ G  
Sbjct: 393 GEKGLCANDVTYSILIDSFCRR-GKLDTAIHFLGKMIMAGIKITVYP----YNSLINGHC 447

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           K GN+  A   F EM+++    P  V++Y + +       ++ EA +    M G+   P 
Sbjct: 448 KLGNLSAAVSFFDEMIDK-GLKPT-VVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPN 505

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
              F+  +  L + N  T A +L+D M  +  N+MPN + YN +I   C   +    F  
Sbjct: 506 TYTFTTLISALFRANRMTDAFRLFDEM--LEQNMMPNEVTYNVMIEGHCKEGNTVKAFEL 563

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
            +QMV  G  PD+ TY  +   L    RV E +KF  ++ +  ++   + C +A+
Sbjct: 564 LNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEM-CYSAL 617



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 150/352 (42%), Gaps = 12/352 (3%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N+M++   K G   + +  +  M + G++    T+  +  S C  G+  EA    D +
Sbjct: 543 TYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDL 602

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGN 232
                + + +  ++LL   C+ E +   AL      VK+ VD D   +A+L++G  KE  
Sbjct: 603 HREHFKLNEMCYSALLHGYCK-EGRLRDALGVCREMVKRGVDMDLVCYAVLIDGTIKE-- 659

Query: 233 VEEANKTFGEMVERFE--WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
            ++ +  FG +    +    P+ V+ Y + +    +   V +A     +M  E C P + 
Sbjct: 660 -QDTSAVFGLLKNMHDQRLRPDKVI-YTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIV 717

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
            ++  ++ L K      A  LW  M  +  N  PN + Y   +  L     ++   +  +
Sbjct: 718 TYTTLINELCKAGLMDKAELLWKEM--LVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHN 775

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
            M+  G   ++++YN++     K  RV E  K   EMI N   P  +  +T I       
Sbjct: 776 DML-KGLLANTVSYNILVRGFCKLGRVEEATKLLDEMIDNAIFPDCITYSTIIYQCCRRG 834

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
             + AIE W+ +L  G+ P   + N L+ G    G L       ++M+ R +
Sbjct: 835 NLDGAIEFWDTMLNKGLKPDTLAYNFLIYGCCIAGELGKAFELRDDMIRRGV 886



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/329 (21%), Positives = 147/329 (44%), Gaps = 8/329 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVR-VMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +  ++  L   GR  +    +  + +E   L+   ++++   YC  G+  +A+     
Sbjct: 577 YTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGVCRE 636

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M   GV+ D+V    L+    ++++ ++      N   + + PD   +  +++G+ K G+
Sbjct: 637 MVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDGYSKAGS 696

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           V++A   +  M++  E    +++ Y T +  L +   +D+A    + M   N  P    +
Sbjct: 697 VKKAFGIWDIMID--EGCTPNIVTYTTLINELCKAGLMDKAELLWKEMLVSNSTPNHVTY 754

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
              LD L +      AVQL + M+     L+ N + YN ++   C    V+   +  D+M
Sbjct: 755 CCFLDHLAREGSMEKAVQLHNDMLK---GLLANTVSYNILVRGFCKLGRVEEATKLLDEM 811

Query: 353 VFHGAFPDSLTYN-MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           + +  FPD +TY+ +I++C  +      +E F+  M+    +P  L     I     A E
Sbjct: 812 IDNAIFPDCITYSTIIYQCCRRGNLDGAIE-FWDTMLNKGLKPDTLAYNFLIYGCCIAGE 870

Query: 412 PEIAIEIWNYILENGILPLEASANELLVG 440
              A E+ + ++  G+ P +A+   L  G
Sbjct: 871 LGKAFELRDDMIRRGVKPNQATHKSLSHG 899



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 83/392 (21%), Positives = 157/392 (40%), Gaps = 48/392 (12%)

Query: 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRV----MKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           L+   +N+++  L KN R   +W AV +    +++    S  T+ ++    C   +++  
Sbjct: 259 LNVVVYNVLIHGLCKNKR---VWEAVEIKNGLIQKGLTASEVTYCTLVLGLCKVQEFEVG 315

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLE 225
               D M   G      A++SL+  + R++ +   A + +NRVKK+   P    +  L+ 
Sbjct: 316 AGVMDEMIELGFVPTEAALSSLVEGL-RRKGKVVDAFDLVNRVKKVGAMPSLFVYNALIN 374

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
              K+G  +EA   F EM E+     +  + Y   + +  R  ++D A+ FL  M     
Sbjct: 375 SLCKDGKFDEAELLFKEMGEKGLCAND--VTYSILIDSFCRRGKLDTAIHFLGKMIMAGI 432

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN------ 339
             T+  +++ ++   KL + + AV  +D M+  G  L P ++ Y ++I   CN       
Sbjct: 433 KITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKG--LKPTVVSYTSLISGYCNKGKLHEA 490

Query: 340 -----------------------------DDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
                                        + + + FR FD+M+     P+ +TYN++ E 
Sbjct: 491 FRLYHEMTGKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEG 550

Query: 371 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 430
             K     +  +  ++M++    P        I+ L        A +  + +        
Sbjct: 551 HCKEGNTVKAFELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLN 610

Query: 431 EASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
           E   + LL G    GRL D      EM+ R +
Sbjct: 611 EMCYSALLHGYCKEGRLRDALGVCREMVKRGV 642


>gi|255570422|ref|XP_002526170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534547|gb|EEF36246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 504

 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 156/345 (45%), Gaps = 5/345 (1%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + + L++D L K+G   +     R M   G+  ++  ++S+ +  C  GK  EAV  FD 
Sbjct: 80  FTYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLINGLCRVGKLREAVNLFDE 139

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M   G++ +V+  NSL+ A CR          F   V + + PD  +F  L++   K+G 
Sbjct: 140 MVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGK 199

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           V+EA K F  M+++ E    +++ Y + L  L    Q+D A++   VM        +  +
Sbjct: 200 VQEAYKIFELMIKQGE--APNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISY 257

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  ++       +  A+ L+  M      L P++  Y  ++  L  N  +      F+ M
Sbjct: 258 NTLINGYCTSGKTEEAMTLFRKMQ--YEELTPSITTYTILLKALYQNGRIRTAKELFNNM 315

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
              G  P   TY ++ + L KN  + E    F  +   +++P+    +  I  +  A   
Sbjct: 316 QICGQSPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMFQARRW 375

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           E A+EI++ I   G++P   + N ++ GL   G+L +  R   +M
Sbjct: 376 ESAMEIFDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQM 420



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/296 (22%), Positives = 138/296 (46%), Gaps = 7/296 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCG 159
           F +  G G       +  ++D L K G+ ++ +    +M + G   ++ T+ S+ +  C 
Sbjct: 172 FSQMVGEGILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCL 231

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGD 218
             + D AV  F+VM   G++ DV++ N+L++  C    +T  A+    +++ + + P   
Sbjct: 232 HHQMDHAVRLFEVMVERGIKIDVISYNTLINGYC-TSGKTEEAMTLFRKMQYEELTPSIT 290

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++ ILL+   + G +  A + F  M  +       +  Y   L  L +   ++EA+   R
Sbjct: 291 TYTILLKALYQNGRIRTAKELFNNM--QICGQSPSLDTYTVLLDGLCKNGCIEEAIDVFR 348

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            +K     P+++ +S  +  + +      A++++D +  +G  L+PN++ YN +I  LC 
Sbjct: 349 SLKSIKYKPSIRIYSILIGGMFQARRWESAMEIFDEIPTVG--LVPNIVTYNIMINGLCK 406

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
              +    R F QM   G   D +++N I    ++  +V +  +F   M +  + P
Sbjct: 407 EGKLLEAERLFVQMEESGCEQDEISFNFIIRGFLQENQVQKAMEFLKRMREKNFSP 462



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 79/360 (21%), Positives = 160/360 (44%), Gaps = 12/360 (3%)

Query: 74  CTGIIPTPDLVHEVLQLSYDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQM 132
           C  +I    L++ + ++       AV+ F     +G + +   +N ++    + G +++ 
Sbjct: 111 CPNVIVYSSLINGLCRVG--KLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEA 168

Query: 133 WNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
                 M  +G+L  + TF ++ D     GK  EA   F++M   G   ++V  NSLL+ 
Sbjct: 169 TRTFSQMVGEGILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNG 228

Query: 192 IC--RQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW 249
           +C   Q +   R  E +  V++ +  D  S+  L+ G+   G  EEA   F +M  ++E 
Sbjct: 229 LCLHHQMDHAVRLFEVM--VERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKM--QYEE 284

Query: 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV 309
               +  Y   L  L +  ++  A +    M+     P+L  ++  LD L K      A+
Sbjct: 285 LTPSITTYTILLKALYQNGRIRTAKELFNNMQICGQSPSLDTYTVLLDGLCKNGCIEEAI 344

Query: 310 QLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFE 369
            ++  +  I +   P++ +Y+ +IG +      ++    FD++   G  P+ +TYN++  
Sbjct: 345 DVFRSLKSIKYK--PSIRIYSILIGGMFQARRWESAMEIFDEIPTVGLVPNIVTYNIMIN 402

Query: 370 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
            L K  ++ E E+ F +M ++  +   ++    I   L  ++ + A+E    + E    P
Sbjct: 403 GLCKEGKLLEAERLFVQMEESGCEQDEISFNFIIRGFLQENQVQKAMEFLKRMREKNFSP 462



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 122/275 (44%), Gaps = 6/275 (2%)

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRG 267
           +K    P+  + + L++G   EG V +A + F +M    F+ +   +L Y   +  L + 
Sbjct: 1   MKSGYQPNLVTVSTLVKGMCFEGKVMDALELFDKMTRSGFQGD---ILLYGYLINALRKT 57

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
           +Q   A++  R M  E C      +   +D L K   +   ++++  M+ +G  + PN+I
Sbjct: 58  RQARRAVELHRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINMG--ICPNVI 115

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
           +Y+++I  LC    +      FD+MV  G   + +TYN +     +     E  + F +M
Sbjct: 116 VYSSLINGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQM 175

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
           +     P  +   T I  L    + + A +I+  +++ G  P   + N LL GL    ++
Sbjct: 176 VGEGILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQM 235

Query: 448 SDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 482
               R  E M+ R I I  ++ + L   +    ++
Sbjct: 236 DHAVRLFEVMVERGIKIDVISYNTLINGYCTSGKT 270


>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Vitis vinifera]
          Length = 718

 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 93/393 (23%), Positives = 164/393 (41%), Gaps = 40/393 (10%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDE 165
           RG   +   +N++++ L K G FEQ    +  M + G+ +S  T+  +   Y   G   E
Sbjct: 263 RGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAE 322

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A+   + M + G    V   NS +  +C+    +    +  + +   + PD  S+  L+ 
Sbjct: 323 ALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIY 382

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+ + GN+ +A   F E+  R  +    ++ Y T L  L R  +++ A +    M  E  
Sbjct: 383 GYCRLGNLMKAFLLFDEL--RSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGI 440

Query: 286 FP---------------------------------TLKFFSNALDIL--VKLNDSTHAVQ 310
            P                                  L  ++ A  I+  +KL D++ A  
Sbjct: 441 APDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFS 500

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
           L + M+  GF   P+LI+YN V+  LC   +++       +MV  G  PD +TY  I   
Sbjct: 501 LQEEMLAKGFP--PDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHA 558

Query: 371 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 430
            ++N R+ +  + F+EM+     P+ +     I         E A   ++ + E GILP 
Sbjct: 559 HLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPN 618

Query: 431 EASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
             + N L+ GL  + R+     F  EM+ + I 
Sbjct: 619 VITYNSLINGLCKVRRMDQAYNFFAEMVEKGIF 651



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 105/499 (21%), Positives = 190/499 (38%), Gaps = 91/499 (18%)

Query: 77  IIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQ-MW 133
           +I  PDL   VL     SP  A+  FRWA    G R S + +  ++++L +N       W
Sbjct: 77  VIVDPDLFVRVLSSFRTSPRMALRLFRWAESQPGFRRSEFVFCAILEILAQNNLMRSAYW 136

Query: 134 NAVRVMKED----------GVLSLPTFASIFD----SYCGAGKYDEAVMSFD-------- 171
              RV+  +          G +S      I D     Y      ++ +  FD        
Sbjct: 137 VMERVINANMHRIVDVLIGGCVSSEVSVKILDLLIWVYSKKSMVEQCLSVFDKMIKSRLS 196

Query: 172 ---------------------------VMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204
                                       M   G++  +V  N+LL + C+   +  + L+
Sbjct: 197 PDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKG-GKVQQGLD 255

Query: 205 FLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM------VERFEWNP------ 251
            L+ + ++   P+  ++ +L+ G  K+G  E+A    GEM      V  + +NP      
Sbjct: 256 LLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYF 315

Query: 252 -------------EHVL--------AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
                        E VL         Y +F+  L +  ++ +A++ L  M   N  P + 
Sbjct: 316 NKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVV 375

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
            ++  +    +L +   A  L+D +  I   L P ++ YN ++  LC   +++   +   
Sbjct: 376 SYNTLIYGYCRLGNLMKAFLLFDELRSI--YLFPTIVTYNTLLDGLCRQGELEVAQQLKV 433

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
           +M+  G  PD +TY ++     K   +   ++FF EM+    +      AT I   L   
Sbjct: 434 EMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLG 493

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 470
           +   A  +   +L  G  P     N ++ GL  LG L +     ++M++  ++   VT  
Sbjct: 494 DTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYT 553

Query: 471 KLKKAFYNES--RSMRDIF 487
            +  A       R  R+IF
Sbjct: 554 SIIHAHLENGRLRKGREIF 572



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 83/383 (21%), Positives = 157/383 (40%), Gaps = 40/383 (10%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G   +   +N  +  L K GR       +  M  + +L  + ++ ++   YC  G   +
Sbjct: 333 KGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMK 392

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQ-ENQTSRALEFLNRVKKIVDPDGDSFAILL 224
           A + FD +    +   +V  N+LL  +CRQ E + ++ L+ +  + + + PD  ++ IL+
Sbjct: 393 AFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLK-VEMINEGIAPDIVTYTILV 451

Query: 225 EGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
            G  K G++  A + F EM+ E  E +     AY T ++  ++      A      M  +
Sbjct: 452 NGSCKMGSLSMAQEFFDEMLHEGLELDS---YAYATRIVGELKLGDTSRAFSLQEEMLAK 508

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF----------------------- 320
              P L  ++  +D L KL +   A +L   MV  G                        
Sbjct: 509 GFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKG 568

Query: 321 ----------NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
                      L P+++ Y  +I        ++  F +F +M   G  P+ +TYN +   
Sbjct: 569 REIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLING 628

Query: 371 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 430
           L K +R+ +   FF EM++    P   +    I    +    + A+ ++  +L+ G+ P 
Sbjct: 629 LCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPD 688

Query: 431 EASANELLVGLRNLGRLSDVRRF 453
             + + LL  L    +L  VR+ 
Sbjct: 689 SCTHSALLKQLGKDCKLQAVRQL 711


>gi|302758228|ref|XP_002962537.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
 gi|300169398|gb|EFJ36000.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
          Length = 439

 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/404 (21%), Positives = 170/404 (42%), Gaps = 49/404 (12%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKE-DGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +++++  L K GR  +       M E   V +L     +  S C AGK D+A+  F  
Sbjct: 4   FTFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGKMDQAMAIF-- 61

Query: 173 MSMHGVE--QDVVAVNSLLSAICRQENQTSRALEFLNRVKK--IVDPDGDSFAILLE--- 225
               G++    V+ +N L++  C  +    +ALE  + ++K   + P+  ++  +++   
Sbjct: 62  ---RGIQCSPSVITLNILINGFCELQ-LLDKALELFHEMEKNFALVPEATTYTAIIKCYC 117

Query: 226 ------------------------------GWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
                                         G+ K   V+EA +   +MVE+    P+ ++
Sbjct: 118 KMDRLDQARQLLEESSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPD-IV 176

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
           A+   +    +  +V EA + L  +    C P    ++  +D   K  + + A+QL+ ++
Sbjct: 177 AWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKVL 236

Query: 316 VGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 375
                +  PN++ +NA+I  LC  D +++ F    QM       D+ TY  + + L K  
Sbjct: 237 SSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQG 296

Query: 376 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 435
           R  EV + F EM++    P+ +   T +     A   + A ++   ++  GI P   +  
Sbjct: 297 RTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYT 356

Query: 436 ELLVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVTMHKLKKA 475
            LL GL   G++     F E++L  R     ++Y   +    KA
Sbjct: 357 VLLEGLFENGKVRTATEFFEKILRERCPPCAVVYSALVRGCCKA 400



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 74/355 (20%), Positives = 159/355 (44%), Gaps = 12/355 (3%)

Query: 98  AVDFFRWAGRGQRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFA--SI 153
           A++ F    +   L P A  +  ++    K  R +Q   A ++++E    S    A  S+
Sbjct: 89  ALELFHEMEKNFALVPEATTYTAIIKCYCKMDRLDQ---ARQLLEESSCCSSDVIAITSV 145

Query: 154 FDSYCGAGKYDEAV-MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI 212
              +C A + DEA  +  D++     + D+VA N ++   C+   +   A E L  +  +
Sbjct: 146 ARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVIIHGFCKA-GRVREAYEMLETLVSM 204

Query: 213 -VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD 271
              P+  ++  L++G+ K GN+ EA + F  +  R      +V+ +   +  L +  +++
Sbjct: 205 GCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLE 264

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA 331
            A + ++ MK  +       ++  +D L K   ++   ++++ M+  G N  P+++ Y  
Sbjct: 265 HAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCN--PSVVTYTT 322

Query: 332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
           ++   C    + +  +    MV  G  PD  TY ++ E L +N +V    +FF ++++  
Sbjct: 323 LVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRER 382

Query: 392 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 446
             P  +  +  +     A   + A++ +  +L+  + P  A+   L+  L   GR
Sbjct: 383 CPPCAVVYSALVRGCCKAALVDEAVKYYVEMLDRRLAPDPATCKLLVEMLCKRGR 437


>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 644

 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 151/338 (44%), Gaps = 8/338 (2%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  FA I  S     +Y   +     M   G+  +V  +N L+++ C   N+ + A   
Sbjct: 73  SIVDFAKILTSITKVKRYSTVLSLSRKMDSFGIPHNVYTLNVLINSFCHL-NRVNFAFSV 131

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLIT 263
           L ++ K+   PD  SF  L++G   EG + EA   F +M+ E F+  P+ V+ Y T +  
Sbjct: 132 LAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHLFDKMIWEGFQ--PD-VVIYATLING 188

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLM 323
           L +      A++ LR M+  NC P +  +   +  L K    T A  L+  M+  G +  
Sbjct: 189 LCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQAFNLFSEMITKGIS-- 246

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           PN++  N+++  LCN  +  +V    ++MV     P++++   + + L K   V +    
Sbjct: 247 PNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTTVVDALCKEGMVAQAHDV 306

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
              M ++  +P  +     I       E + A+++++ ++  G  P   S N L+ G   
Sbjct: 307 VDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKGCAPNVFSYNTLINGYCK 366

Query: 444 LGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
           + R+       EEM  ++++   VT + L     +  R
Sbjct: 367 IERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGR 404



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 140/301 (46%), Gaps = 12/301 (3%)

Query: 110 RLSPYAWNL--MVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           ++ P A +L  +VD L K G   Q  + V +M + GV   + T+ ++ D +C   + DEA
Sbjct: 279 KIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEA 338

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
           V  FD+M   G   +V + N+L++  C+ E        F    ++ + P+  ++  L+ G
Sbjct: 339 VKVFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHG 398

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
               G +++A   F EMV   +  P+ ++ Y   L  L +   +D+A+  L+ ++G N  
Sbjct: 399 LCHVGRLQDAIALFREMVACGQI-PD-LVTYRILLDYLCKNCHLDKAMALLKAIEGSNLD 456

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346
           P ++ ++  +D + +  +   A  L+  +   G  L PN+  YN +   LC    +D   
Sbjct: 457 PDIQIYTIVIDGMCRAGELEDARDLFSNLSSKG--LKPNVWTYNIMTHGLCKRGLLDEAT 514

Query: 347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406
           + F +M  +    D  TYN I +  ++N       +   EM+   +     +C  + T L
Sbjct: 515 KLFMEMDENACSADGCTYNTITQGFLRNNETSRAIQLLEEMLARGF-----SCDVSTTTL 569

Query: 407 L 407
           L
Sbjct: 570 L 570



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 84/386 (21%), Positives = 158/386 (40%), Gaps = 13/386 (3%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y  N++++      R    ++ + +++K        +F ++    C  G+  EA+  FD 
Sbjct: 110 YTLNVLINSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHLFDK 169

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEG 231
           M   G + DVV   +L++ +C+    TS A+  L  ++K    PD   +  L+    K+ 
Sbjct: 170 MIWEGFQPDVVIYATLINGLCKT-GHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDR 228

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
              +A   F EM+ +   +P +++   + +  L    +       L  M      P    
Sbjct: 229 QQTQAFNLFSEMITK-GISP-NIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAIS 286

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
            +  +D L K      A  + D+M   G    P+++ Y A+I   C   ++D   + FD 
Sbjct: 287 LTTVVDALCKEGMVAQAHDVVDMMFQSGVE--PDVVTYTALIDGHCLRSEMDEAVKVFDM 344

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           MV  G  P+  +YN +     K +R+ +    F EM + +  P  +   T I  L     
Sbjct: 345 MVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGR 404

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNRRILIYEV 467
            + AI ++  ++  G +P   +   LL  L     L       + +    L+  I IY +
Sbjct: 405 LQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTI 464

Query: 468 TMHKLKKAFYNESRSMRDIFDSLERR 493
            +  + +A   E    RD+F +L  +
Sbjct: 465 VIDGMCRA--GELEDARDLFSNLSSK 488



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/248 (19%), Positives = 96/248 (38%), Gaps = 4/248 (1%)

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +++A  +F  M+      P  ++ +   L ++ + K+    L   R M        +   
Sbjct: 55  LDDALSSFNRMLHMHP--PPSIVDFAKILTSITKVKRYSTVLSLSRKMDSFGIPHNVYTL 112

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  ++    LN    A  +   ++ +G    P+   +  +I  LC    +      FD+M
Sbjct: 113 NVLINSFCHLNRVNFAFSVLAKILKLGCQ--PDTASFTTLIKGLCLEGQIGEALHLFDKM 170

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
           ++ G  PD + Y  +   L K        +    M K   QP  +   T I  L    + 
Sbjct: 171 IWEGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQ 230

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
             A  +++ ++  GI P   + N L+  L NLG    V     EM++ +I+   +++  +
Sbjct: 231 TQAFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTTV 290

Query: 473 KKAFYNES 480
             A   E 
Sbjct: 291 VDALCKEG 298


>gi|41152692|dbj|BAD08216.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 401

 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 136/289 (47%), Gaps = 7/289 (2%)

Query: 109 QRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           QR+SP    +N ++  L K    ++    +  M + GV+    T+ SI   +C +G+  E
Sbjct: 110 QRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKE 169

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A++    M   GVE DVV  NSL+  +C+    T     F +  K+ + PD  ++  LL+
Sbjct: 170 AIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQ 229

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+  +G + E +     MV R   +P H + +   +    + ++V+EA+     M+ +  
Sbjct: 230 GYATKGALVEMHGLLDLMV-RNGIHPNHYV-FSILVCAYAKQEKVEEAMLVFSKMRQQGL 287

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P    +   +D+L K      A+  ++ M+  G  L P+ I+YN++I  LC  D  +  
Sbjct: 288 NPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEG--LRPDSIVYNSLIHSLCIFDKWEKA 345

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
              F +M+  G    ++ +N I +   K  RV E  K F  M++   +P
Sbjct: 346 EELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKP 394



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 69/319 (21%), Positives = 140/319 (43%), Gaps = 26/319 (8%)

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD----- 218
           ++A   FD +   G+  DV + N LL+ +C  EN++  ALE L+    + D  GD     
Sbjct: 34  EDARHVFDELLRRGIP-DVFSYNILLNGLC-DENRSQEALELLH---IMADDGGDCPPDV 88

Query: 219 -SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            S++ ++ G+ KEG++++       + +R   N   V+ Y + +  L + + VD+A++ L
Sbjct: 89  VSYSTVINGFFKEGDLDKM------LDQRISPN---VVTYNSIIAALCKAQTVDKAMEVL 139

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337
             M      P    +++ +           A+     M   G    P+++ YN+++  LC
Sbjct: 140 TTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVE--PDVVTYNSLMDYLC 197

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
            N       + FD M   G  PD  TY  + +       + E+      M++N   P   
Sbjct: 198 KNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHY 257

Query: 398 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
             +  +      ++ E A+ +++ + + G+ P   +   ++  L   GR+ D   + E+M
Sbjct: 258 VFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQM 317

Query: 458 LNRRI----LIYEVTMHKL 472
           ++  +    ++Y   +H L
Sbjct: 318 IDEGLRPDSIVYNSLIHSL 336



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/318 (22%), Positives = 142/318 (44%), Gaps = 16/318 (5%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSF 170
           +++N++++ L    R ++    + +M +DG    P   +++++ + +   G  D+     
Sbjct: 52  FSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDK----- 106

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEK 229
             M    +  +VV  NS+++A+C+ +    +A+E L   VK  V PD  ++  ++ G+  
Sbjct: 107 --MLDQRISPNVVTYNSIIAALCKAQT-VDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCS 163

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
            G  +EA     +M  R +     V+ Y + +  L +  +  EA K    M      P +
Sbjct: 164 SGQPKEAIVFLKKM--RSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDI 221

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
             +   L              L D+MV  G +  PN  +++ ++      + V+     F
Sbjct: 222 TTYGTLLQGYATKGALVEMHGLLDLMVRNGIH--PNHYVFSILVCAYAKQEKVEEAMLVF 279

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 409
            +M   G  P+++TY  + + L K+ RV +   +F +MI    +P  +   + I  L   
Sbjct: 280 SKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIF 339

Query: 410 DEPEIAIEIWNYILENGI 427
           D+ E A E++  +L+ GI
Sbjct: 340 DKWEKAEELFLEMLDRGI 357


>gi|242062226|ref|XP_002452402.1| hypothetical protein SORBIDRAFT_04g025130 [Sorghum bicolor]
 gi|241932233|gb|EES05378.1| hypothetical protein SORBIDRAFT_04g025130 [Sorghum bicolor]
          Length = 506

 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 149/338 (44%), Gaps = 11/338 (3%)

Query: 63  ASSDDIESALA--CTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA---GRGQRLSPYAWN 117
            S +D+   LA  C+ +  T  +   +L+   D   SA+ FF WA   G G   +P A N
Sbjct: 67  GSVEDLVRTLAAECSEVRLTSGVADSLLRRCGDDWKSALGFFLWAQSRGGGYSHTPCACN 126

Query: 118 LMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
            MVD+LGK  + ++MW+ +  M   G++++ T A        A ++ +A++ FD +   G
Sbjct: 127 RMVDLLGKMRQIDRMWDLLSEMHCRGLVTVDTIAKSIRRLAAARRWRDAILLFDQLEDLG 186

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
           +E++   +N LL A+C+ E +   A E    +   + PD  +F I + GW     ++EA 
Sbjct: 187 LERNTETMNVLLDALCK-ERKVELAREVFVMLSPHIAPDAYTFNIFVHGWCSVRRIDEAM 245

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297
            T  EM  R    P  V+ Y   L    + +      + L  M  + C P +  ++  + 
Sbjct: 246 WTIEEMKNR--GFPPIVITYTAVLEAYCKQRNFRRVYEILDSMSSQGCHPNVITYTMIMT 303

Query: 298 ILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGA 357
            L K      A+ + D M   G    P+ + YNA+I LL     +    + F   +    
Sbjct: 304 SLTKCERFEEALSVSDRMKSSGCK--PDTLFYNALINLLGRAGHLFEANQVFRVEMPRNV 361

Query: 358 FPDSL-TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
            P ++ TYN +   L +  R  +      EM     +P
Sbjct: 362 VPRNVATYNTMISILCQYGRDDDALDVLKEMEAQSCKP 399



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 121/264 (45%), Gaps = 11/264 (4%)

Query: 130 EQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSL 188
           E MW  +  MK  G   +  T+ ++ ++YC    +       D MS  G   +V+    +
Sbjct: 243 EAMWT-IEEMKNRGFPPIVITYTAVLEAYCKQRNFRRVYEILDSMSSQGCHPNVITYTMI 301

Query: 189 LSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF 247
           ++++ + E +   AL   +R+K     PD   +  L+    + G++ EAN+ F   + R 
Sbjct: 302 MTSLTKCE-RFEEALSVSDRMKSSGCKPDTLFYNALINLLGRAGHLFEANQVFRVEMPR- 359

Query: 248 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 307
              P +V  Y T +  L +  + D+AL  L+ M+ ++C P L+ +   L +L      T 
Sbjct: 360 NVVPRNVATYNTMISILCQYGRDDDALDVLKEMEAQSCKPDLQTYQPLLRLLFGRRGQTG 419

Query: 308 AVQ--LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYN 365
           A+   L ++    G  L  +L  Y  +I  LC   + D  ++ +D+MV     P   T  
Sbjct: 420 AIHHLLSELRDRNGLGL--DLDTYTLLIHGLCRVGETDWAYQLYDEMVGSEIVPRPKTCE 477

Query: 366 MIF-ECLIKNKRVHEVEKFFHEMI 388
           ++  E   +N  V+ VE+  +++I
Sbjct: 478 LLLSETQRQNMEVY-VERIQNDVI 500


>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 774

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 141/303 (46%), Gaps = 9/303 (2%)

Query: 150 FASIFDSYCGAGKYDEA-VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           F  + + Y  +G+ DEA    +D M  +G   DV   N+L+  +C++    S A++ +N 
Sbjct: 347 FTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGS-AVDMVND 405

Query: 209 VK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIR 266
           +      P+  ++  LL+G+ K+  +EEA     EM  + FE N   ++ Y   L  L +
Sbjct: 406 MSANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELN---IMGYNVLLRALCK 462

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNL 326
             +V +AL  L  M  + C P +  F+  +  L K++    A+ L+  M+  G  ++ N 
Sbjct: 463 NGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDG--VIANT 520

Query: 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 386
           + YN +I        +    +  + M+F G   D +TYN + +   K     +    F E
Sbjct: 521 VTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDE 580

Query: 387 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 446
           M++ +  P+ ++C   I  L    +   A+E+   ++  G+ P   + N L+ GL  +G 
Sbjct: 581 MVRKDLVPSNISCNLLINGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGN 640

Query: 447 LSD 449
           + +
Sbjct: 641 IRE 643



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 147/334 (44%), Gaps = 13/334 (3%)

Query: 78  IPTPDLVHEVLQLSYDSPSSAVD------FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQ 131
           +PTP+ VH  + ++    S  +D      + +    G R   + +N ++  L K G    
Sbjct: 339 VPTPNDVHFTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGS 398

Query: 132 MWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS 190
             + V  M  +G   +L T+ ++ D +C   + +EA    + MS  G E +++  N LL 
Sbjct: 399 AVDMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLR 458

Query: 191 AICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW 249
           A+C+   +  +AL+ L  +  K   PD  +F  L+ G  K    E+A   + +M+   + 
Sbjct: 459 ALCKN-GKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDML--LDG 515

Query: 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV 309
              + + Y T +   +RG  + EALK +  M    C      ++  +    KL  +  A+
Sbjct: 516 VIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKAL 575

Query: 310 QLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFE 369
            L+D MV    +L+P+ I  N +I  LC    V N       M+  G  PD +TYN +  
Sbjct: 576 GLFDEMVRK--DLVPSNISCNLLINGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLIN 633

Query: 370 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
            L K   + E    F+++     QP  +   T I
Sbjct: 634 GLCKMGNIREAFNLFNKLQAEGIQPDAITYNTLI 667



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 92/434 (21%), Positives = 186/434 (42%), Gaps = 18/434 (4%)

Query: 67  DIESALACTGIIPTPDLVHEVLQLSYDSPSSAVD-FFRWAGRGQRLSPYAWNLMVDVLGK 125
           D++    C     + ++V ++L +S + PS A + F+    +G   + Y + +++  L  
Sbjct: 162 DMKGVYCCEPTFKSYNVVLDIL-VSANCPSVAANVFYEMLSKGVIPTVYTFGVVMKALCM 220

Query: 126 NGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVA 184
               +   + +R M + G + +   + ++  +     + +EA+   + M + G   DV  
Sbjct: 221 VNEVDNACSLLRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCLPDVDT 280

Query: 185 VNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
            N ++  +CR  N+     + ++R+  +   P+  ++ +L+ G  + G V+EA     ++
Sbjct: 281 FNDVIYGLCRL-NRIHEGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGKVDEAQVLLNKV 339

Query: 244 VERFEWNPEHVLAYETFLIT-LIRGKQVDEALKFLR-VMKGENCFPTLKFFSNALDILVK 301
                  P     + T LI   ++  ++DEA  FL   M    C P +  F+  +  L K
Sbjct: 340 -------PTPNDVHFTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCK 392

Query: 302 LNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS 361
                 AV + + M   G    PNLI Y  ++   C  + ++      ++M   G   + 
Sbjct: 393 KGLMGSAVDMVNDMSANG--CTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNI 450

Query: 362 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 421
           + YN++   L KN +V +      EM     +P      T I  L   D  E A+ ++  
Sbjct: 451 MGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRD 510

Query: 422 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF--YNE 479
           +L +G++    + N L+      G + +  +   +ML R   + E+T + L KAF     
Sbjct: 511 MLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGA 570

Query: 480 SRSMRDIFDSLERR 493
           +     +FD + R+
Sbjct: 571 TEKALGLFDEMVRK 584



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 90/421 (21%), Positives = 164/421 (38%), Gaps = 15/421 (3%)

Query: 51  SSARIICEILAHASSDDIES----ALACTGIIPTP---DLVHEVLQLSYDSPSSAVDFFR 103
            S  ++ +IL  A+   + +     +   G+IPT     +V + L +  +  ++      
Sbjct: 174 KSYNVVLDILVSANCPSVAANVFYEMLSKGVIPTVYTFGVVMKALCMVNEVDNACSLLRD 233

Query: 104 WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGK 162
               G   +   +  ++  L K  R  +    +  M   G L  + TF  +    C   +
Sbjct: 234 MTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCLPDVDTFNDVIYGLCRLNR 293

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
             E     D M   G   + +    L++ +CR   +   A   LN+V     P+   F I
Sbjct: 294 IHEGAKLVDRMLFRGFTPNDITYGVLMNGLCRV-GKVDEAQVLLNKVPT---PNDVHFTI 349

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+ G+ K G ++EAN    + + +    P+ V  + T +  L +   +  A+  +  M  
Sbjct: 350 LINGYVKSGRLDEANAFLYDKMIKNGCRPD-VFTFNTLIHGLCKKGLMGSAVDMVNDMSA 408

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
             C P L  ++  LD   K N    A  + + M   GF L  N++ YN ++  LC N  V
Sbjct: 409 NGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFEL--NIMGYNVLLRALCKNGKV 466

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
                   +M   G  PD  T+N +   L K  R  +    + +M+ +      +   T 
Sbjct: 467 PKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTL 526

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
           I   L     + A+++ N +L  G    E + N L+     LG         +EM+ + +
Sbjct: 527 IHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDL 586

Query: 463 L 463
           +
Sbjct: 587 V 587


>gi|224114285|ref|XP_002316718.1| predicted protein [Populus trichocarpa]
 gi|222859783|gb|EEE97330.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 96/416 (23%), Positives = 169/416 (40%), Gaps = 41/416 (9%)

Query: 81  PDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWNAVRV 138
           P LV  VL LS      A+DFF W+ R  R    P  + +M+DVL K    +     +R+
Sbjct: 50  PRLVCAVL-LSQSDERVALDFFFWSDRQWRYRHDPIVYCVMLDVLSKTKLCQGARRVLRL 108

Query: 139 MKEDGVLSLPT-FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           M   G+   P  F  +  SY  AGK   A+    +M   G+E +++  N+ +  +    N
Sbjct: 109 MVRRGIQRTPQDFCCVMVSYSRAGKLRNAMQVLTMMQKAGIEPNLLVCNTAIHVLV-MAN 167

Query: 198 QTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEM------------- 243
              +AL FL R++ + + P+  ++  L++G+     VE+A +   EM             
Sbjct: 168 MLEKALRFLERMQLLGIMPNVVTYNCLIKGYCDLHRVEDAMELISEMPLKGCSPDKVSYY 227

Query: 244 ------------------VERFEWNP--EHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
                             +E+ E        + Y T +  L + +  DEAL+FLR  +  
Sbjct: 228 TVMGFLCKNRRIREVMDVIEKMEDTKLLADQVTYNTLIHMLCKHQHADEALQFLREAQKR 287

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
                   +S  +D   K      A ++ + M   G   +P+++ Y A+I       +V 
Sbjct: 288 GFQVDKVGYSAIVDSYCKEGRMDQAKEIVNEMFTRG--CIPDVVTYTAIINGFSQAGEVG 345

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
              +   QM  HG  P++++Y    + L +     E  +      +  W P  +  +  +
Sbjct: 346 QARKMLQQMYKHGCKPNTVSYTAFLKGLCQKGNSSEAREMMKASEEQWWTPNAITYSVVM 405

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
                  +   A ++   ++  G  P     N LL  L  +GR+ + ++F EE LN
Sbjct: 406 HGFRREGKLSDACDVVREMIGKGFFPTPVEINLLLQSLCRIGRVDEAKKFMEECLN 461



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 132/291 (45%), Gaps = 7/291 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N ++ +L K+   ++    +R  ++ G  +    +++I DSYC  G+ D+A    + M
Sbjct: 260 TYNTLIHMLCKHQHADEALQFLREAQKRGFQVDKVGYSAIVDSYCKEGRMDQAKEIVNEM 319

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGN 232
              G   DVV   ++++    Q  +  +A + L ++ K    P+  S+   L+G  ++GN
Sbjct: 320 FTRGCIPDVVTYTAIINGF-SQAGEVGQARKMLQQMYKHGCKPNTVSYTAFLKGLCQKGN 378

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
             EA +      E++ W P + + Y   +    R  ++ +A   +R M G+  FPT    
Sbjct: 379 SSEAREMMKASEEQW-WTP-NAITYSVVMHGFRREGKLSDACDVVREMIGKGFFPTPVEI 436

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  L  L ++     A +  +  + +G  +  N + +  VI   C  DD++      D M
Sbjct: 437 NLLLQSLCRIGRVDEAKKFMEECLNMGCAV--NAVNFTTVIHRFCQQDDIEAALSLLDDM 494

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
                 PD++TY  I + L K  R+ E  +   +M+K    PTP+   T I
Sbjct: 495 YLSNKHPDAVTYTTIIDALGKKGRIEEATELTLKMLKKGIDPTPVTYRTVI 545



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 72/359 (20%), Positives = 151/359 (42%), Gaps = 20/359 (5%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           ++ ++    C   +  E +   + M    +  D V  N+L+  +C+ ++    AL+FL  
Sbjct: 225 SYYTVMGFLCKNRRIREVMDVIEKMEDTKLLADQVTYNTLIHMLCKHQH-ADEALQFLRE 283

Query: 209 V-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
             K+    D   ++ +++ + KEG +++A +   EM  R    P+ V+ Y   +    + 
Sbjct: 284 AQKRGFQVDKVGYSAIVDSYCKEGRMDQAKEIVNEMFTR-GCIPD-VVTYTAIINGFSQA 341

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
            +V +A K L+ M    C P    ++  L  L +  +S+ A ++        +   PN I
Sbjct: 342 GEVGQARKMLQQMYKHGCKPNTVSYTAFLKGLCQKGNSSEAREMMKASEEQWWT--PNAI 399

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            Y+ V+        + +      +M+  G FP  +  N++ + L +  RV E +KF  E 
Sbjct: 400 TYSVVMHGFRREGKLSDACDVVREMIGKGFFPTPVEINLLLQSLCRIGRVDEAKKFMEEC 459

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
           +        +N  T I      D+ E A+ + + +  +   P   +   ++  L   GR+
Sbjct: 460 LNMGCAVNAVNFTTVIHRFCQQDDIEAALSLLDDMYLSNKHPDAVTYTTIIDALGKKGRI 519

Query: 448 SDVRRFAEEMLNRRI----LIYEVTMHKLKKAFYNESRSMRDIFDSLER-----RCKTS 497
            +      +ML + I    + Y   +H+     Y +   + D+ + L++      C+T+
Sbjct: 520 EEATELTLKMLKKGIDPTPVTYRTVIHR-----YGQIGRVEDLLNLLDKMLTRQECRTA 573



 Score = 43.1 bits (100), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 39/179 (21%), Positives = 74/179 (41%), Gaps = 10/179 (5%)

Query: 307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM 366
           +A+Q+  +M   G    PNL++ N  I +L   + ++   RF ++M   G  P+ +TYN 
Sbjct: 136 NAMQVLTMMQKAGIE--PNLLVCNTAIHVLVMANMLEKALRFLERMQLLGIMPNVVTYN- 192

Query: 367 IFECLIKN----KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 422
              CLIK      RV +  +   EM      P  ++  T +  L         +++   +
Sbjct: 193 ---CLIKGYCDLHRVEDAMELISEMPLKGCSPDKVSYYTVMGFLCKNRRIREVMDVIEKM 249

Query: 423 LENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
            +  +L  + + N L+  L       +  +F  E   R   + +V    +  ++  E R
Sbjct: 250 EDTKLLADQVTYNTLIHMLCKHQHADEALQFLREAQKRGFQVDKVGYSAIVDSYCKEGR 308


>gi|356510681|ref|XP_003524064.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
           mitochondrial-like [Glycine max]
          Length = 450

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 97/398 (24%), Positives = 173/398 (43%), Gaps = 20/398 (5%)

Query: 68  IESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYA--WNLMVDVLGK 125
           +E  L    I  TP+LV  VL+   ++P+ ++ FF WA      SP +  +  +V  L +
Sbjct: 55  LERTLNKLRITVTPELVFRVLRACSNNPTESLRFFNWARTHPSYSPTSLEFEQIVTTLAR 114

Query: 126 NGRFEQMWNAVRVMKEDGVLSL--PTFASIFDSYCGAGKYDEAVMSFDVMS-MHGVEQDV 182
              ++ MW  +R +     LSL     AS+ ++Y      D++V  F+    +    Q +
Sbjct: 115 ANTYQSMWALIRQVTLHHRLSLSPSAVASVIEAYGDNRHVDQSVQVFNKSPLLLNCPQTL 174

Query: 183 VAVNSLLSAICRQENQTSRALEFLNR--VKKIVDPDGDSFAILLEGWEKEGNVEEANKTF 240
              N+LL ++C   N+       L R  ++K + PD  ++A+L+  W   G + EA    
Sbjct: 175 PLYNALLRSLC--HNKLFHGAYALVRRMLRKGLRPDKTTYAVLVNAWCSNGKLREAKLFL 232

Query: 241 GEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV 300
            EM E+  +NP  V   +  +  L+    V+ A   +R M  +   P +  F+  ++ + 
Sbjct: 233 EEMSEK-GFNPP-VRGRDLLVEGLLNAGYVESAKGMVRNMIKQGSVPDVGTFNAVVETVS 290

Query: 301 KLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPD 360
           K  D    V L+  +  +G  + P++  Y  ++  +  +  VD  FR  +  +  G  P 
Sbjct: 291 K-EDVQFCVGLYHEVCALG--MAPDVNTYKILVPAVSKSGMVDEAFRLLNNFIEDGHKPF 347

Query: 361 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 420
              Y  + + L +  +  +   FF +M      P        ITM   A +    +E  N
Sbjct: 348 PSLYAPVIKALCRRGQFDDAFCFFGDMKAKAHPPNRPLYTMLITMCGRAGK---FVEAAN 404

Query: 421 YIL---ENGILPLEASANELLVGLRNLGRLSDVRRFAE 455
           YI    E G++P+    + +  GL+N G+    RR  E
Sbjct: 405 YIFEMTEMGLVPISRCFDMVTDGLKNCGKHDLARRVQE 442


>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
 gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
          Length = 669

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 98/417 (23%), Positives = 182/417 (43%), Gaps = 28/417 (6%)

Query: 36  TRPRFPTHLDAPYISSS--ARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQ--LS 91
           TRP  P   +AP  +S+   R+I       +   +E + +C G  P   L  ++++    
Sbjct: 32  TRPESP---NAPNPASAHLRRLIAREDLAGAVRLVERSGSCDGEAPDVYLCTKLIRNLCR 88

Query: 92  YDSPSSAVDFFRWA-GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-- 148
               S A    R A G G  +  +A+N +V    + G  +    A R +    + S+P  
Sbjct: 89  RGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLD----AARRL----IGSMPVA 140

Query: 149 ----TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204
               T+  +    C  G+  +A+   D M   G + +VV    LL A+CR      +A+ 
Sbjct: 141 PDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSG-FEQAMA 199

Query: 205 FLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT 263
            L+ ++ K   P+  ++ +++ G  +EG V++A +    +   + + P+ V +Y T L  
Sbjct: 200 VLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRL-PSYGFQPDTV-SYTTLLKG 257

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLM 323
           L   K+ D+  +    M  +NC P    F   +    +      A+Q+ + M   G    
Sbjct: 258 LCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHG--CA 315

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
            N  + N VI  +C    VD+ F+  + M  +G  PD+++Y  + + L + +R  + ++ 
Sbjct: 316 TNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKEL 375

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 440
            +EM++N   P  +   T I +L      E AI +   + E+G      + N L+ G
Sbjct: 376 LNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNG 432



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/382 (20%), Positives = 163/382 (42%), Gaps = 12/382 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASI-FDSYCGAGKYDEAVMSFDVMS 174
           +++++    + G  E+    +  M E G  +  T  +I  +S C  G+ D+A    + M 
Sbjct: 286 FDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMG 345

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNV 233
            +G   D ++  ++L  +CR E +   A E LN  V+    P+  +F   +    ++G +
Sbjct: 346 SYGCNPDTISYTTVLKGLCRAE-RWDDAKELLNEMVRNNCPPNEVTFNTFICILCQKGLI 404

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           E+A     +M E        V+ Y   +        +D AL+  R M    C P    ++
Sbjct: 405 EQAIMLIEQMSE--HGCTVGVVTYNALVNGFCVQGHIDSALELFRSMP---CKPNTITYT 459

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             L  L        A +L   M  +  +  PN++ +N ++   C    ++      +QM+
Sbjct: 460 TLLTGLCNAERLDGAAELVAEM--LRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMM 517

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
            HG  P+ +TYN + + + K+    +  +  H ++     P  +  ++ I +L   D  E
Sbjct: 518 EHGCTPNLITYNTLLDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRIE 577

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 473
            A+++++ + + G+ P     N++L+GL     + +   F   M++   +  E T   L 
Sbjct: 578 EAVQLFHVVQDIGMRPKAVVYNKILLGLCKRCEIDNAIDFFAYMVSNGCMPNESTYIILI 637

Query: 474 KAFYNES--RSMRDIFDSLERR 493
           +   +E   +  +D+   L  R
Sbjct: 638 EGLAHEGLLKEAQDLLSVLCSR 659



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/307 (22%), Positives = 130/307 (42%), Gaps = 13/307 (4%)

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDP-DGDSFAILLEGWEKEGN 232
           S  G   DV     L+  +CR+  +TS A   L   +    P D  ++  L+ G+ + G+
Sbjct: 68  SCDGEAPDVYLCTKLIRNLCRR-GRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGH 126

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           ++ A +  G M       P+    Y   +  L    +V +AL  L  M    C P +  +
Sbjct: 127 LDAARRLIGSM----PVAPD-AYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTY 181

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  L+ + + +    A+ + D M   G    PN++ YN +I  +C    VD+     +++
Sbjct: 182 TVLLEAMCRNSGFEQAMAVLDEMRAKGCT--PNIVTYNVIINGMCREGRVDDARELLNRL 239

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
             +G  PD+++Y  + + L  +KR  +VE+ F EM++    P  +     I         
Sbjct: 240 PSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMV 299

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNRRILIYEVT 468
           E AI++   + E+G        N ++  +   GR+ D  +   +M     N   + Y   
Sbjct: 300 ERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTV 359

Query: 469 MHKLKKA 475
           +  L +A
Sbjct: 360 LKGLCRA 366


>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 99/420 (23%), Positives = 185/420 (44%), Gaps = 41/420 (9%)

Query: 98  AVDFFRWAGRGQ-RLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP----TF 150
           A++F+     G+  +SP   ++NL++  + K G  ++   A+ V +E  +        T+
Sbjct: 170 ALEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDR---AIEVFREMAIQKCEPDVFTY 226

Query: 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK 210
            ++ D  C   + DEAV+  D M + G     V  N L++ +C++ +          RV 
Sbjct: 227 CTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMV--------RVT 278

Query: 211 KIVD--------PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI 262
           K+VD        P+  ++  ++ G   +G +++A      MV   +  P  V  Y T + 
Sbjct: 279 KLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVAS-KCVPNDV-TYGTLIN 336

Query: 263 TLIR-GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFN 321
            L++ G+ VD  +  L  ++          +S  +  L K   S  A+ LW  MV  G  
Sbjct: 337 GLVKQGRSVD-GVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKG-- 393

Query: 322 LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 381
             PN+++Y+A+I  LC    +D       +MV  G  P++ TY+ + +   K     +  
Sbjct: 394 CQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAI 453

Query: 382 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 441
           + + EM KN   P  +  +  I  L +  +   A+ +W ++L  G+ P   + + ++ GL
Sbjct: 454 RVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGL 513

Query: 442 RNLGRLSDVRRFAEEMLNRR------ILIYEVTMHKLKKAFYNESRSMRDIFDS-LERRC 494
            N G +    +   EML +       ++ Y + +  L K   N      D+ +S L+R C
Sbjct: 514 CNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQ--NSISHAIDLLNSMLDRGC 571



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 60/301 (19%), Positives = 133/301 (44%), Gaps = 7/301 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N +++ L   G+ ++  + + R++    V +  T+ ++ +     G+  + V     +
Sbjct: 295 TYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSL 354

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G   +  A ++L+S + ++E        +   V+K   P+   ++ L++G  +EG +
Sbjct: 355 EERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKL 414

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           +EA +   EMV +      +   Y + +    +     +A++  + M   NC P    +S
Sbjct: 415 DEAKEILCEMVNK--GCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYS 472

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +  L +      A+ +W  M+G G  L P+++ Y+++I  LCN   V+   + F++M+
Sbjct: 473 VLIHGLCEDGKLREAMMMWTHMLGRG--LRPDVVAYSSMIHGLCNAGSVEVGLKLFNEML 530

Query: 354 FH--GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
                + PD +TYN++   L K   +       + M+     P  + C   +  L +   
Sbjct: 531 CQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNALREKLN 590

Query: 412 P 412
           P
Sbjct: 591 P 591



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 117/282 (41%), Gaps = 8/282 (2%)

Query: 217 GDS-FAILLEGWEKEGNVEEANKTFGEMVE--RFEWNPEHVLAYETFLITLIRGKQVDEA 273
           GDS F  L+E +   G+     + F  M    R       +L +  +    +  K ++  
Sbjct: 79  GDSTFYSLIENYANSGDFGTLFQVFDRMKRERRVFIEKNFILVFRAYGKAHLPEKAIE-- 136

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
             F R++    C  T++ F++ L+++++      A++ ++  VG   N+ PN++ +N VI
Sbjct: 137 -LFGRMVDEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVI 195

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
             +C    VD     F +M      PD  TY  + + L K  R+ E      EM      
Sbjct: 196 KAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCF 255

Query: 394 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 453
           P+ +     I  L    +     ++ + +   G +P E + N ++ GL   G+L      
Sbjct: 256 PSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSL 315

Query: 454 AEEMLNRRILIYEVTMHKLKKAFYNESRSMRDI--FDSLERR 493
            + M+  + +  +VT   L      + RS+  +    SLE R
Sbjct: 316 LDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEER 357


>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
 gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
          Length = 616

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 149/335 (44%), Gaps = 6/335 (1%)

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206
           L TF ++ D +C AG    A+   + M    +  DV+    L++ +CR   Q   A   L
Sbjct: 271 LVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRV-GQVQVAFYLL 329

Query: 207 NR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
              V++   PD  ++  L++G  K G +EEA+K   EM  R       V+ Y + +    
Sbjct: 330 EEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVR--GCRTGVVMYSSLVSGYC 387

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN 325
           R   V +A + L  M   N  P L  ++  L  L+K    + AV L   +V  G+  +P+
Sbjct: 388 RAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGY--VPD 445

Query: 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 385
           ++ YN +I  LC  + V       D+M   G FP+ +T   +   L +  RV +      
Sbjct: 446 VVTYNTLIDGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVV 505

Query: 386 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
           EM +    P  +   + I  L  +D  + A  + + +   G+   + +  +L+V + + G
Sbjct: 506 EMSRKRHAPNVVVYTSLIDGLCKSDRMDDACMVLDAMRGQGVALDDFAYRKLIVSMSHGG 565

Query: 446 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 480
           R+++     +EM+ R  L    T   L++A  + S
Sbjct: 566 RVAEAMAMYDEMVARGFLPDGSTSKTLEEAAMSNS 600



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 83/369 (22%), Positives = 152/369 (41%), Gaps = 8/369 (2%)

Query: 95  PSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFA 151
           P  A+ FF WAG   G +   +++N ++D+L K+G   +     + +   G   +L TF 
Sbjct: 7   PDLAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFK 66

Query: 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK 211
            +    C AG+   A+     +    V  DV   N L+  + +  N       F N    
Sbjct: 67  ILIRGNCKAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESS 126

Query: 212 IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD 271
            V P+  ++  ++ G  K GN+E+A +   EM+ +   +   ++ Y T +    R  ++ 
Sbjct: 127 RVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIR 186

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA 331
           EA  F   MK     P +   +  +  + K  D   A+++ D M   G   +P++I YN+
Sbjct: 187 EACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAG--PVPDVITYNS 244

Query: 332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
           +I  LC    V         M      PD +T+N + +   K   +    +   EM +  
Sbjct: 245 IIHALCVAGKVVEAAEILKTM---SCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCREN 301

Query: 392 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 451
             P  +     +  L    + ++A  +   I+  G +P   +   L+ GL   G + +  
Sbjct: 302 ILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAH 361

Query: 452 RFAEEMLNR 460
           +  +EM  R
Sbjct: 362 KLVKEMSVR 370



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 96/424 (22%), Positives = 173/424 (40%), Gaps = 48/424 (11%)

Query: 94  SPSSAVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP--- 148
           +P  AV  F       R+ P    +N ++  L K+G  E+    +  M   G  S P   
Sbjct: 112 NPDQAVKLFENM-ESSRVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIV 170

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ ++ +++  A +  EA    + M   G+  DV+  N L+S IC+ +     ALE L+ 
Sbjct: 171 TYNTLINAFYRASRIREACAFREKMKAAGINPDVLTCNILVSGICK-DGDVEEALEILDG 229

Query: 209 VK----------------------KIVD-----------PDGDSFAILLEGWEKEGNVEE 235
           +K                      K+V+           PD  +F  LL+G+ K G +  
Sbjct: 230 MKLAGPVPDVITYNSIIHALCVAGKVVEAAEILKTMSCSPDLVTFNTLLDGFCKAGMLPR 289

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
           A +   EM  R    P+ V+ Y   +  L R  QV  A   L  +  +   P +  +++ 
Sbjct: 290 ALEVLEEMC-RENILPD-VITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSL 347

Query: 296 LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
           +D L K  +   A +L   M   G      ++MY++++   C   +V        +MV  
Sbjct: 348 VDGLCKSGEIEEAHKLVKEMSVRGCR--TGVVMYSSLVSGYCRAGNVHKAREILAEMVSI 405

Query: 356 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 415
              P   TYN++   LIK+  + +      +++   + P  +   T I  L  A+    A
Sbjct: 406 NMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREA 465

Query: 416 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR----ILIYEVTMHK 471
            ++ + +   G  P + +   ++ GL  +GR+ D      EM  +R    +++Y   +  
Sbjct: 466 CDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDG 525

Query: 472 LKKA 475
           L K+
Sbjct: 526 LCKS 529


>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
 gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
          Length = 528

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/352 (25%), Positives = 152/352 (43%), Gaps = 16/352 (4%)

Query: 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204
           L   TF  +    C AGK   A+     M       + V  N++++  C +  +   AL+
Sbjct: 112 LCTTTFNIMLRHLCSAGKPARALELLRQMP----RPNAVTYNTVIAGFCSR-GRVQAALD 166

Query: 205 FLN--RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI 262
            +   R +  + P+  ++  ++ GW K G V+EA K F EM+ + E  PE V+ Y   + 
Sbjct: 167 IMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVM-YNALIG 225

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL 322
                 ++D AL +   M       T+  ++  +  L      T A +L + M G G  L
Sbjct: 226 GYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKG--L 283

Query: 323 MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
            P++  YN +I   C   +V      F+ M   G     +TY  +   L K  +V E +K
Sbjct: 284 APDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDK 343

Query: 383 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 442
            F E ++   +P  +     I     +   + A EI   + +  I P + + N L+ GL 
Sbjct: 344 LFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLC 403

Query: 443 NLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMR-DIFDSLERR 493
            LGR+ + R+  +EM  R I    VT + L   +     SM+ D+ D+L  R
Sbjct: 404 LLGRVDEARKLIDEMTERGIQPDLVTYNTLISGY-----SMKGDVKDALRIR 450



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 163/377 (43%), Gaps = 14/377 (3%)

Query: 91  SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-- 148
           S   P+ A++  R   R   ++   +N ++      GR +   + +R M+E G ++ P  
Sbjct: 126 SAGKPARALELLRQMPRPNAVT---YNTVIAGFCSRGRVQAALDIMREMRERGGIA-PNQ 181

Query: 149 -TFASIFDSYCGAGKYDEAVMSFDVMSMHG-VEQDVVAVNSLLSAICRQENQTSRALEFL 206
            T+ ++   +C  G+ DEAV  FD M   G V+ + V  N+L+   C Q  +   AL + 
Sbjct: 182 YTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQ-GKLDTALLYR 240

Query: 207 NR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
           +R V++ V     ++ +L+     +G   EA +   EM  +    P+ V  Y   +    
Sbjct: 241 DRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGK-GLAPD-VFTYNILINGHC 298

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN 325
           +   V +AL+    M       T+  ++  +  L K        +L+D  V  G    P+
Sbjct: 299 KEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIR--PD 356

Query: 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 385
           L++YNA+I     + ++D  F    +M      PD +TYN +   L    RV E  K   
Sbjct: 357 LVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLID 416

Query: 386 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
           EM +   QP  +   T I+      + + A+ I N ++  G  P   + N L+ GL   G
Sbjct: 417 EMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNG 476

Query: 446 RLSDVRRFAEEMLNRRI 462
           +  D     +EM+   I
Sbjct: 477 QGDDAENMVKEMVENGI 493



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 127/313 (40%), Gaps = 40/313 (12%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAG 161
           R   RG  ++   +NL+V  L  +GR  + +  V  M   G+   + T+  + + +C  G
Sbjct: 242 RMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEG 301

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221
              +A+  F+ MS  GV   VV   +L+ A+ ++         F   V++ + PD   + 
Sbjct: 302 NVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYN 361

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L+      GN++ A +  GEM E+    P+ V  Y T +  L    +VDEA K +  M 
Sbjct: 362 ALINSHSTSGNIDRAFEIMGEM-EKKRIAPDDV-TYNTLMRGLCLLGRVDEARKLIDEM- 418

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
                                  +   +Q             P+L+ YN +I       D
Sbjct: 419 -----------------------TERGIQ-------------PDLVTYNTLISGYSMKGD 442

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
           V +  R  ++M+  G  P  LTYN + + L KN +  + E    EM++N   P      +
Sbjct: 443 VKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYIS 502

Query: 402 AITMLLDADEPEI 414
            I  L   DE  I
Sbjct: 503 LIEGLTTEDERAI 515


>gi|359496995|ref|XP_003635394.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g65820-like [Vitis vinifera]
          Length = 622

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 90/406 (22%), Positives = 161/406 (39%), Gaps = 9/406 (2%)

Query: 62  HASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLM 119
           H+    +E AL  +G+     L   VL    D+ +    FF WA +  G R S   +  M
Sbjct: 69  HSRVPKLELALQESGVAVRSGLTERVLNRCGDAGNLGYRFFVWASKQPGYRHSYEVYKAM 128

Query: 120 VDVLGKNGRFEQMWNAVRVMKEDG--VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           + +LGK  +F  +W  +  M+ +    +S   F  +   +  A    +A+   D M  +G
Sbjct: 129 IKILGKMRQFGAVWALIEEMRRENPQFVSPYVFVVLMRRFASARMVKKAIEVLDEMPKYG 188

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
            E D      LL A+C+       A      ++    P    F  LL GW +EG + EA 
Sbjct: 189 CEPDEHVFGCLLDALCKN-GSVKEAASLFEDMRIRFTPTLKHFTSLLYGWCREGKLMEAK 247

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297
               ++ E   + P+ ++ Y   L       ++ +A   L+ M+ + C P +  F+  + 
Sbjct: 248 YVLVQIREA-GFEPD-IVVYNNLLTGYAAAGKMVDAYDLLKEMRRKECEPNVMSFTTLIQ 305

Query: 298 ILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGA 357
            L        A++++  M   G     + + Y  +I   C    +   +   D M+  G 
Sbjct: 306 ALCAKKKMEEAMRVFFEMQSCG--CPADAVTYTTLISGFCKWGKISKGYELLDNMIQQGH 363

Query: 358 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 417
            P+ +TY  I     K + + E  +   EM K    P        I +     E +  + 
Sbjct: 364 IPNPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPDLNIYNIVIRLACKLGEIKEGVR 423

Query: 418 IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
           +WN +   G+ P   +   ++ G  +   L +   F +EM+ R +L
Sbjct: 424 VWNEMEATGLSPGLDTFVIMIHGFLSQRCLVEACEFFKEMVGRGLL 469



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 137/316 (43%), Gaps = 8/316 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           + +  ++D L KNG  ++  +    M+     +L  F S+   +C  GK  EA      +
Sbjct: 194 HVFGCLLDALCKNGSVKEAASLFEDMRIRFTPTLKHFTSLLYGWCREGKLMEAKYVLVQI 253

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGN 232
              G E D+V  N+LL+       +   A + L  + +K  +P+  SF  L++    +  
Sbjct: 254 REAGFEPDIVVYNNLLTGYA-AAGKMVDAYDLLKEMRRKECEPNVMSFTTLIQALCAKKK 312

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +EEA + F EM  +    P   + Y T +    +  ++ +  + L  M  +   P    +
Sbjct: 313 MEEAMRVFFEM--QSCGCPADAVTYTTLISGFCKWGKISKGYELLDNMIQQGHIPNPMTY 370

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
            + +    K  +    ++L + M  IG    P+L +YN VI L C   ++    R +++M
Sbjct: 371 LHIMAAHEKKEELEECIELMEEMRKIGCT--PDLNIYNIVIRLACKLGEIKEGVRVWNEM 428

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL--NCATAITMLLDAD 410
              G  P   T+ ++    +  + + E  +FF EM+       P        +  LL A+
Sbjct: 429 EATGLSPGLDTFVIMIHGFLSQRCLVEACEFFKEMVGRGLLSAPQYGTLKELLNSLLRAE 488

Query: 411 EPEIAIEIWNYILENG 426
           + E++ ++W+ I+  G
Sbjct: 489 KLEMSKDVWSCIMTKG 504


>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
           restorer; AltName: Full=Protein PPR; AltName:
           Full=Restorer for CMS; Flags: Precursor
 gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
 gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
 gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
 gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
 gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
          Length = 791

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 173/408 (42%), Gaps = 46/408 (11%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
           G G      ++  +++   K G  ++ ++    M + G+L  + T+ SI  + C A   D
Sbjct: 189 GGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMD 248

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAIL 223
           +A+   + M  +GV  D +  NS+L   C    Q   A+ FL +++   V+PD  ++++L
Sbjct: 249 KAMEVLNTMVKNGVMPDCMTYNSILHGYC-SSGQPKEAIGFLKKMRSDGVEPDVVTYSLL 307

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           ++   K G   EA K F  M +R    PE +  Y T L        + E    L +M   
Sbjct: 308 MDYLCKNGRCMEARKIFDSMTKR-GLKPE-ITTYGTLLQGYATKGALVEMHGLLDLMVRN 365

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
              P    FS  +    K      A+ ++  M   G N  PN + Y AVIG+LC +  V+
Sbjct: 366 GIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLN--PNAVTYGAVIGILCKSGRVE 423

Query: 344 NVFRFFDQMVFHGAFPDSLTYN-----------------MIFE------CL--------- 371
           +   +F+QM+  G  P ++ YN                 +I E      CL         
Sbjct: 424 DAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSII 483

Query: 372 ---IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 428
               K  RV E EK F  M++   +P  +   T I     A + + A+++ + ++  G+ 
Sbjct: 484 DSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLK 543

Query: 429 PLEASANELLVGLRNLGRLSDVRRFAEEM----LNRRILIYEVTMHKL 472
           P   + + L+ G   + R+ D     +EM    ++  I+ Y + +  L
Sbjct: 544 PNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGL 591



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 87/392 (22%), Positives = 171/392 (43%), Gaps = 12/392 (3%)

Query: 56  ICEILAHASSDDIESALACTGIIPTPDLVHEVLQ--LSYDSPSSAVDFFRWAGRGQRLSP 113
           +C+  A   + ++ + +   G++P     + +L    S   P  A+ F +   R   + P
Sbjct: 241 LCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKM-RSDGVEP 299

Query: 114 --YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSF 170
               ++L++D L KNGR  +       M + G+   + T+ ++   Y   G   E     
Sbjct: 300 DVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLL 359

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
           D+M  +G+  D    + L+ A  +Q       L F    ++ ++P+  ++  ++    K 
Sbjct: 360 DLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKS 419

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF-LRVMKGENCFPTL 289
           G VE+A   F +M++    +P +++ Y + +  L    + + A +  L ++    C  T+
Sbjct: 420 GRVEDAMLYFEQMIDE-GLSPGNIV-YNSLIHGLCTCNKWERAEELILEMLDRGICLNTI 477

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
            FF++ +D   K      + +L+++MV IG    PN+I YN +I   C    +D   +  
Sbjct: 478 -FFNSIIDSHCKEGRVIESEKLFELMVRIGVK--PNVITYNTLINGYCLAGKMDEAMKLL 534

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 409
             MV  G  P+++TY+ +     K  R+ +    F EM  +   P  +     +  L   
Sbjct: 535 SGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQT 594

Query: 410 DEPEIAIEIWNYILENGILPLEASANELLVGL 441
                A E++  I E+G     ++ N +L GL
Sbjct: 595 RRTAAAKELYVRITESGTQIELSTYNIILHGL 626



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 131/297 (44%), Gaps = 15/297 (5%)

Query: 107 RGQRLSPYAWNLMVDVLGKNG------RFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGA 160
           RG+  S Y  N  +  + ++       R+ +M    R   ++    L T+  +    C A
Sbjct: 44  RGRGASIYGLNRALADVARDSPAAAVSRYNRM---ARAGADEVTPDLCTYGILIGCCCRA 100

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF-LNRVKKI-VDPDGD 218
           G+ D    +   +   G   D +A   LL  +C  + +TS A++  L R+ ++   P+  
Sbjct: 101 GRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLC-ADKRTSDAMDIVLRRMTELGCIPNVF 159

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
           S+ ILL+G   E   +EA +    M  +R   +P  V++Y T +    +    D+A    
Sbjct: 160 SYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTY 219

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337
             M      P +  +++ +  L K      A+++ + MV  G  +MP+ + YN+++   C
Sbjct: 220 HEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNG--VMPDCMTYNSILHGYC 277

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
           ++        F  +M   G  PD +TY+++ + L KN R  E  K F  M K   +P
Sbjct: 278 SSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKP 334



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/303 (22%), Positives = 123/303 (40%), Gaps = 9/303 (2%)

Query: 166 AVMSFDVMSMHGVEQ---DVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
           AV  ++ M+  G ++   D+     L+   CR            N +KK    D  +F  
Sbjct: 68  AVSRYNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTP 127

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM-- 280
           LL+G   +    +A       +      P +V +Y   L  L    +  EAL+ L +M  
Sbjct: 128 LLKGLCADKRTSDAMDIVLRRMTELGCIP-NVFSYNILLKGLCDENRSQEALELLHMMAD 186

Query: 281 -KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
            +G    P +  ++  ++   K  DS  A   +  M+  G  ++P+++ YN++I  LC  
Sbjct: 187 DRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRG--ILPDVVTYNSIIAALCKA 244

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
             +D      + MV +G  PD +TYN I      + +  E   F  +M  +  +P  +  
Sbjct: 245 QAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTY 304

Query: 400 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
           +  +  L        A +I++ + + G+ P   +   LL G    G L ++    + M+ 
Sbjct: 305 SLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVR 364

Query: 460 RRI 462
             I
Sbjct: 365 NGI 367



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 137/314 (43%), Gaps = 13/314 (4%)

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI----VDPDGDS 219
           ++A   FD +   G    +  +N  L+ + R  +  + A+   NR+ +     V PD  +
Sbjct: 32  EDARHVFDELLRRGRGASIYGLNRALADVAR--DSPAAAVSRYNRMARAGADEVTPDLCT 89

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKF-L 277
           + IL+    + G ++      G ++++ F  +    +A+   L  L   K+  +A+   L
Sbjct: 90  YGILIGCCCRAGRLDLGFAALGNVIKKGFRVDA---IAFTPLLKGLCADKRTSDAMDIVL 146

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG-IGFNLMPNLIMYNAVIGLL 336
           R M    C P +  ++  L  L   N S  A++L  +M    G    P+++ Y  VI   
Sbjct: 147 RRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGF 206

Query: 337 CNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 396
               D D  +  + +M+  G  PD +TYN I   L K + + +  +  + M+KN   P  
Sbjct: 207 FKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDC 266

Query: 397 LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 456
           +   + +     + +P+ AI     +  +G+ P   + + L+  L   GR  + R+  + 
Sbjct: 267 MTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDS 326

Query: 457 MLNRRILIYEVTMH 470
           M  +R L  E+T +
Sbjct: 327 M-TKRGLKPEITTY 339



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 67/316 (21%), Positives = 133/316 (42%), Gaps = 38/316 (12%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +++++    K G+ +Q       M++ G+  +  T+ ++    C +G+ ++A++ F+ 
Sbjct: 372 YVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQ 431

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEF-LNRVKKIVDPDGDSFAILLEGWEKEG 231
           M   G+    +  NSL+  +C   N+  RA E  L  + + +  +   F  +++   KEG
Sbjct: 432 MIDEGLSPGNIVYNSLIHGLCTC-NKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEG 490

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            V E+ K F E++ R    P +V+ Y T +       ++DEA+K L  M      P    
Sbjct: 491 RVIESEKLF-ELMVRIGVKP-NVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVT 548

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFN---LMPNLIM-------------------- 328
           +S  ++   K++    A+ L+  M   G +   +  N+I+                    
Sbjct: 549 YSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRIT 608

Query: 329 ----------YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVH 378
                     YN ++  LC N   D+  + F  +       ++ T+N++ + L+K  R  
Sbjct: 609 ESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRND 668

Query: 379 EVEKFFHEMIKNEWQP 394
           E +  F     N   P
Sbjct: 669 EAKDLFVAFSSNGLVP 684


>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 577

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 88/386 (22%), Positives = 170/386 (44%), Gaps = 13/386 (3%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y  N++++      R    ++ + +++K     ++ TF ++    C  GK  E +  FD 
Sbjct: 95  YTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDK 154

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEG 231
           M   G + +VV   +L++ +C+    TS A+  L  +++    PD   +  +++   K+ 
Sbjct: 155 MIGEGFQPNVVTYGTLINGLCKV-GSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDR 213

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            V +A   F EM+ +   +P  +  Y + +  L    +       L  M      P +  
Sbjct: 214 QVTQAFNLFSEMIHQ-GISPS-IFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVI 271

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           FS  +D L K      A  + D+M+  G    PN++ YNA++   C   ++D   + FD 
Sbjct: 272 FSTVVDALCKEGKVMEAHDVVDMMIKRGVE--PNVVTYNALMDGHCLRSEMDEAVKVFDT 329

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           MV  G  PD ++Y+ +     K +R+ +    F EM + E  P  +  +T +  L     
Sbjct: 330 MVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGR 389

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNRRILIYEV 467
            + AI +++ ++  G +P   S   LL  L    RL +     + +    ++  I IY +
Sbjct: 390 LQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTI 449

Query: 468 TMHKLKKAFYNESRSMRDIFDSLERR 493
            +  + +A   E  + RD+F +L  +
Sbjct: 450 VIDGMCRA--GELEAARDLFSNLSSK 473



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/344 (22%), Positives = 146/344 (42%), Gaps = 40/344 (11%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           ++ +VD L K G+  +  + V +M + GV  ++ T+ ++ D +C   + DEAV  FD M 
Sbjct: 272 FSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMV 331

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G   DVV+ ++L++  C+ +        F    +K + P+  +++ L+ G    G ++
Sbjct: 332 CKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQ 391

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           +A   F EMV R +  P+ V +Y   L  L + +++DEA+  L+ ++G N          
Sbjct: 392 DAIALFHEMVTRGQI-PDFV-SYCILLDYLCKNRRLDEAIALLKAIEGSN---------- 439

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
                                      + P++ +Y  VI  +C   +++     F  +  
Sbjct: 440 ---------------------------MDPDIQIYTIVIDGMCRAGELEAARDLFSNLSS 472

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 414
            G  P+  TY ++   L +   + E  K F EM +  + P            L  +E   
Sbjct: 473 KGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLR 532

Query: 415 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
            I++   +L  G     +++  L+  L + G    V++   E L
Sbjct: 533 GIQLLQEMLARGFSADVSTSTVLVEMLSDDGLDQSVKQILSEFL 576



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 55/263 (20%), Positives = 102/263 (38%), Gaps = 6/263 (2%)

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +++A  +F  M+      P  +  +   LI++ + K     L     M      P +   
Sbjct: 40  LDDALSSFNRMLHMHP--PPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTL 97

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  ++    L     A  +   ++ +G    PN+  +N +I  LC    +  V   FD+M
Sbjct: 98  NILINSFCHLQRLGFAFSVLAKILKLGHQ--PNIATFNTLIRGLCVEGKIGEVLHLFDKM 155

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
           +  G  P+ +TY  +   L K        +    M +   QP  +   + I  L    + 
Sbjct: 156 IGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQV 215

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
             A  +++ ++  GI P   + N L+  L NL     V     EM+N +I+   V    +
Sbjct: 216 TQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTV 275

Query: 473 KKAFYNESRSM--RDIFDSLERR 493
             A   E + M   D+ D + +R
Sbjct: 276 VDALCKEGKVMEAHDVVDMMIKR 298


>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
          Length = 1078

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 92/393 (23%), Positives = 164/393 (41%), Gaps = 40/393 (10%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDE 165
           RG   +   +N++++ L K G FEQ    +  M + G+ +S  T+  +   Y   G   E
Sbjct: 263 RGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAE 322

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A+   + M + G    V   NS +  +C+    +    +  + +   + PD  S+  L+ 
Sbjct: 323 ALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIY 382

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+ + GN+ +A   F E+   + +    ++ Y T L  L R  +++ A +    M  E  
Sbjct: 383 GYCRLGNLMKAFLLFDELRSIYLF--PTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGI 440

Query: 286 FP---------------------------------TLKFFSNALDIL--VKLNDSTHAVQ 310
            P                                  L  ++ A  I+  +KL D++ A  
Sbjct: 441 APDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFS 500

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
           L + M+  GF   P+LI+YN V+  LC   +++       +MV  G  PD +TY  I   
Sbjct: 501 LQEEMLAKGFP--PDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHA 558

Query: 371 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 430
            ++N R+ +  + F+EM+     P+ +     I         E A   ++ + E GILP 
Sbjct: 559 HLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPN 618

Query: 431 EASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
             + N L+ GL  + R+     F  EM+ + I 
Sbjct: 619 VITYNSLINGLCKVRRMDQAYNFFAEMVEKGIF 651



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 105/499 (21%), Positives = 190/499 (38%), Gaps = 91/499 (18%)

Query: 77  IIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQ-MW 133
           +I  PDL   VL     SP  A+  FRWA    G R S + +  ++++L +N       W
Sbjct: 77  VIVDPDLFVRVLSSFRTSPRMALRLFRWAESQPGFRRSEFVFCAILEILAQNNLMRSAYW 136

Query: 134 NAVRVMKED----------GVLSLPTFASIFD----SYCGAGKYDEAVMSFD-------- 171
              RV+  +          G +S      I D     Y      ++ +  FD        
Sbjct: 137 VMERVINANMHRIVDVLIGGCVSSEVSVKILDLLIWVYSKKSMVEQCLSVFDKMIKSRLS 196

Query: 172 ---------------------------VMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204
                                       M   G++  +V  N+LL + C+   +  + L+
Sbjct: 197 PDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKG-GKVQQGLD 255

Query: 205 FLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM------VERFEWNP------ 251
            L+ + ++   P+  ++ +L+ G  K+G  E+A    GEM      V  + +NP      
Sbjct: 256 LLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYF 315

Query: 252 -------------EHVL--------AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
                        E VL         Y +F+  L +  ++ +A++ L  M   N  P + 
Sbjct: 316 NKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVV 375

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
            ++  +    +L +   A  L+D +  I   L P ++ YN ++  LC   +++   +   
Sbjct: 376 SYNTLIYGYCRLGNLMKAFLLFDELRSI--YLFPTIVTYNTLLDGLCRQGELEVAQQLKV 433

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
           +M+  G  PD +TY ++     K   +   ++FF EM+    +      AT I   L   
Sbjct: 434 EMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLG 493

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 470
           +   A  +   +L  G  P     N ++ GL  LG L +     ++M++  ++   VT  
Sbjct: 494 DTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYT 553

Query: 471 KLKKAFYNES--RSMRDIF 487
            +  A       R  R+IF
Sbjct: 554 SIIHAHLENGRLRKGREIF 572



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 81/359 (22%), Positives = 155/359 (43%), Gaps = 9/359 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G   +   +N  +  L K GR       +  M  + +L  + ++ ++   YC  G   +
Sbjct: 333 KGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMK 392

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQ-ENQTSRALEFLNRVKKIVDPDGDSFAILL 224
           A + FD +    +   +V  N+LL  +CRQ E + ++ L+ +  + + + PD  ++ IL+
Sbjct: 393 AFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLK-VEMINEGIAPDIVTYTILV 451

Query: 225 EGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
            G  K G++  A + F EM+ E  E +     AY T ++  ++      A      M  +
Sbjct: 452 NGSCKMGSLSMAQEFFDEMLHEGLELDS---YAYATRIVGELKLGDTSRAFSLQEEMLAK 508

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
              P L  ++  +D L KL +   A +L   MV  G  ++P+ + Y ++I     N  + 
Sbjct: 509 GFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDG--VIPDYVTYTSIIHAHLENGRLR 566

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
                F +M+  G  P  +TY ++        R+     +F EM +    P  +   + I
Sbjct: 567 KGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLI 626

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
             L      + A   +  ++E GI P + S   L+    N+G   +     ++ML+R +
Sbjct: 627 NGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGV 685



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 67/301 (22%), Positives = 119/301 (39%), Gaps = 38/301 (12%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N ++D L + G  E        M  +G+   + T+  + +  C  G    A   FD M
Sbjct: 411 TYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEM 470

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGN 232
              G+E D  A  + +    +  + TSRA       + K   PD   + ++++G  K GN
Sbjct: 471 LHEGLELDSYAYATRIVGELKLGD-TSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGN 529

Query: 233 VEEANKTFGEMV-------------------ERFEWNPEHVLAYE-------------TF 260
           +EEA++   +MV                   E         + YE             T 
Sbjct: 530 LEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTV 589

Query: 261 LITLIRGK-QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG 319
           LI    GK +++ A  +   M+ +   P +  +++ ++ L K+     A   +  MV  G
Sbjct: 590 LIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKG 649

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
             + PN   Y  +I   CN  +       + QM+  G  PDS T++ + + L K+ ++  
Sbjct: 650 --IFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSALLKQLGKDCKLQA 707

Query: 380 V 380
           V
Sbjct: 708 V 708


>gi|147767159|emb|CAN71515.1| hypothetical protein VITISV_021787 [Vitis vinifera]
          Length = 655

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 90/406 (22%), Positives = 161/406 (39%), Gaps = 9/406 (2%)

Query: 62  HASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLM 119
           H+    +E AL  +G+     L   VL    D+ +    FF WA +  G R S   +  M
Sbjct: 102 HSRVPKLELALQESGVAVRSGLTERVLNRCGDAGNLGYRFFVWASKQPGYRHSYEVYKAM 161

Query: 120 VDVLGKNGRFEQMWNAVRVMKEDG--VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           + +LGK  +F  +W  +  M+ +    +S   F  +   +  A    +A+   D M  +G
Sbjct: 162 IKILGKMRQFGAVWALIEEMRRENPQFVSPYVFVVLMRRFASARMVKKAIEVLDEMPKYG 221

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
            E D      LL A+C+       A      ++    P    F  LL GW +EG + EA 
Sbjct: 222 CEPDEHVFGCLLDALCKN-GSVKEAASLFEDMRIRFTPTLKHFTSLLYGWCREGKLMEAK 280

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297
               ++ E   + P+ ++ Y   L       ++ +A   L+ M+ + C P +  F+  + 
Sbjct: 281 YVLVQIREA-GFEPD-IVVYNNLLTGYAAAGKMVDAYDLLKEMRRKECEPNVMSFTTLIQ 338

Query: 298 ILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGA 357
            L        A++++  M   G     + + Y  +I   C    +   +   D M+  G 
Sbjct: 339 ALCAKKKMEEAMRVFFEMQSCGCP--ADAVTYTTLISGFCKWGKISKGYELLDNMIQQGH 396

Query: 358 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 417
            P+ +TY  I     K + + E  +   EM K    P        I +     E +  + 
Sbjct: 397 IPNPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPDLNIYNIVIRLACKLGEIKEGVR 456

Query: 418 IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
           +WN +   G+ P   +   ++ G  +   L +   F +EM+ R +L
Sbjct: 457 VWNEMEATGLSPGLDTFVIMIHGFLSQRCLVEACEFFKEMVGRGLL 502



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 137/316 (43%), Gaps = 8/316 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           + +  ++D L KNG  ++  +    M+     +L  F S+   +C  GK  EA      +
Sbjct: 227 HVFGCLLDALCKNGSVKEAASLFEDMRIRFTPTLKHFTSLLYGWCREGKLMEAKYVLVQI 286

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGN 232
              G E D+V  N+LL+       +   A + L  + +K  +P+  SF  L++    +  
Sbjct: 287 REAGFEPDIVVYNNLLTGYA-AAGKMVDAYDLLKEMRRKECEPNVMSFTTLIQALCAKKK 345

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +EEA + F EM  +    P   + Y T +    +  ++ +  + L  M  +   P    +
Sbjct: 346 MEEAMRVFFEM--QSCGCPADAVTYTTLISGFCKWGKISKGYELLDNMIQQGHIPNPMTY 403

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
            + +    K  +    ++L + M  IG    P+L +YN VI L C   ++    R +++M
Sbjct: 404 LHIMAAHEKKEELEECIELMEEMRKIGCT--PDLNIYNIVIRLACKLGEIKEGVRVWNEM 461

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL--NCATAITMLLDAD 410
              G  P   T+ ++    +  + + E  +FF EM+       P        +  LL A+
Sbjct: 462 EATGLSPGLDTFVIMIHGFLSQRCLVEACEFFKEMVGRGLLSAPQYGTLKELLNSLLRAE 521

Query: 411 EPEIAIEIWNYILENG 426
           + E++ ++W+ I+  G
Sbjct: 522 KLEMSKDVWSCIMTKG 537


>gi|255586139|ref|XP_002533731.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526356|gb|EEF28650.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 90/391 (23%), Positives = 159/391 (40%), Gaps = 21/391 (5%)

Query: 85  HEVLQLSYDSPSSAVDF----------FRWAG-----RGQRLSPYAWNLMVDVLGKNGRF 129
           +E+LQ+   S   A+D+          F W+        +++  +A  LMV +LG+  + 
Sbjct: 144 YELLQVDLISLLKALDYSGNWEKALLLFEWSVLNLGIANEKIDRHAIELMVRILGRESQH 203

Query: 130 EQMWNAVRVMK-EDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSL 188
                   V+  +D VL +  + +I  +Y   GKY  A+  F+ M+  G+   +V  N +
Sbjct: 204 TVASKLFDVIPLDDYVLDVRAYTTILHAYSRTGKYHRAIEIFERMNESGLSPSLVTYNVM 263

Query: 189 LSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF 247
           L    +      + LE L+ ++ + +D D  + + +L    +EG ++EA + F  +  + 
Sbjct: 264 LDVYGKMGRSWDKILELLDEMRSRGLDFDEFTCSTVLSACGREGLIDEAREFFSGL--KS 321

Query: 248 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 307
           E      + Y   L    +     EAL  L  M+  NC P    ++  +   V+      
Sbjct: 322 EGYKPGTVTYNALLHVFGKAGIFSEALSVLSEMEENNCPPDAVTYNEVVAAYVRAGFHEE 381

Query: 308 AVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMI 367
              + D M   G  +MPN + Y  +I       D+D     FDQM+  G  P+  TYN +
Sbjct: 382 GAVVIDAMASKG--IMPNAVTYTTIINAYGRVGDIDKALEMFDQMMELGCVPNVATYNAV 439

Query: 368 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 427
              L K     E+ K    M  N   P  +   T + M       +   +++  +   G 
Sbjct: 440 LGMLGKKSLSEEMMKILGHMKLNGCSPNHITWNTMLAMCGKKGMHKYVNQVFREMKNCGF 499

Query: 428 LPLEASANELLVGLRNLGRLSDVRRFAEEML 458
            P   + N L+      G  +D  +  EEM+
Sbjct: 500 EPDRDTFNTLISAYGRCGSNNDAAKMHEEMI 530



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 66/379 (17%), Positives = 141/379 (37%), Gaps = 41/379 (10%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            WN M+ + GK G  + +    R MK  G      TF ++  +Y   G  ++A    + M
Sbjct: 470 TWNTMLAMCGKKGMHKYVNQVFREMKNCGFEPDRDTFNTLISAYGRCGSNNDAAKMHEEM 529

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G    +   N+LL+A+ R+ +  +     L+   K   P   S+++++  + K GNV
Sbjct: 530 IKAGFSPCINTYNALLNALARRGDWKAAESVILDMRNKGFRPSETSYSLMVHSYAKGGNV 589

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           +       EM+E+  ++ +                                 FP+     
Sbjct: 590 KGI-----EMIEKSIYDGD--------------------------------IFPSWMLLR 612

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +    K    T   + +  +   G+   P+L++ N+++ +   N+  D        + 
Sbjct: 613 TLVLANFKCRSLTGMERAFQALQKHGYK--PDLVLCNSMLSIFAKNNMYDRAHEMLRLIH 670

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G  PD +T+N + +   +     + E+    +  +  +P  ++  T I         +
Sbjct: 671 DAGLQPDLVTHNSLMDMYARGGDCWKAEEVLRMLQTSGGKPDLVSYNTVIKGFCRKGLMQ 730

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 473
             I I + +   G+ P   + N  + G    G  +++      M+       E+T +K+ 
Sbjct: 731 EGIRILSEMTSIGVGPCIFTYNTFISGYAAQGMFTEINDVISYMIVHNCRPNELT-YKIV 789

Query: 474 KAFYNESRSMRDIFDSLER 492
              Y ++R   +  D + +
Sbjct: 790 ADGYCKARRYDEAIDFVSK 808


>gi|297851460|ref|XP_002893611.1| hypothetical protein ARALYDRAFT_336125 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297339453|gb|EFH69870.1| hypothetical protein ARALYDRAFT_336125 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 814

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 102/423 (24%), Positives = 174/423 (41%), Gaps = 43/423 (10%)

Query: 81  PDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWNAVRV 138
           P  V  VL+ S D    A+ FF WA R  R    P  +  M++VL K    +     + +
Sbjct: 177 PSQVCAVLR-SQDDERVALKFFYWADRQWRYRHDPMVYYSMLEVLSKTKMCQGARRVLVL 235

Query: 139 MKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           MK  G+   P  F  +  SY  AG+  +A+    +M   GVE +++  N+ +    R  N
Sbjct: 236 MKRRGIYRTPEAFLRVMVSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRA-N 294

Query: 198 QTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF--------- 247
           +  +AL FL R++ + + P+  ++  ++ G+     VEEA +   +M  +          
Sbjct: 295 RLEKALRFLERMQVVGIVPNVVTYNCMIRGYCDLHRVEEAIELLDDMPSKGCLPDKVSYY 354

Query: 248 --------------------EWNPEHVL-----AYETFLITLIRGKQVDEALKFLRVMKG 282
                               +   EH L      Y T +  L +    DEAL FL+  + 
Sbjct: 355 TIMGYLCKEKRIVEVRDLMKKMAKEHGLVRDQVTYNTLIHMLTKHDHADEALWFLKDAE- 413

Query: 283 ENCFPTLKF-FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
           E  F   K  +S  +  L K    + A  L + M+  G +  P+++ Y AV+   C   +
Sbjct: 414 EKGFRIDKVGYSAIVHALCKEGRMSEAKDLINEMLSKG-HCPPDVVTYTAVVNGFCRLGE 472

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
           VD   +    M  HG  P++++Y  +   L +  +  E  +  +   +  W P  +  + 
Sbjct: 473 VDKAKKLLQIMHTHGYKPNTVSYTALLNGLCRTGKSLEAREMMNMSEEQWWSPNSITYSV 532

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461
            +  L    +   A ++   ++  G  P     N LL  L   GR  + R+F EE LN+ 
Sbjct: 533 LMHGLRKEGKLSEACDVVREMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKG 592

Query: 462 ILI 464
             I
Sbjct: 593 CAI 595



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 85/383 (22%), Positives = 157/383 (40%), Gaps = 54/383 (14%)

Query: 83  LVHEVLQLSYDSPSSAVDFFRWAG-RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE 141
           L+H + +  +D    A+ F + A  +G R+    ++ +V  L K GR  +  + +  M  
Sbjct: 392 LIHMLTK--HDHADEALWFLKDAEEKGFRIDKVGYSAIVHALCKEGRMSEAKDLINEMLS 449

Query: 142 DGVL--SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQT 199
            G     + T+ ++ + +C  G+ D+A     +M  HG + + V+  +LL+ +CR   ++
Sbjct: 450 KGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQIMHTHGYKPNTVSYTALLNGLCRT-GKS 508

Query: 200 SRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAY 257
             A E +N  + +   P+  ++++L+ G  KEG + EA     EMV + F   P  +   
Sbjct: 509 LEAREMMNMSEEQWWSPNSITYSVLMHGLRKEGKLSEACDVVREMVLKGFFPGPVEI--- 565

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317
              L +L R  +  EA KF+     + C                                
Sbjct: 566 NLLLQSLCRDGRTHEARKFMEECLNKGC-------------------------------- 593

Query: 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
                  N++ +  VI   C ND++D      D M       D  TY  + + L K  R+
Sbjct: 594 -----AINVVNFTTVIHGFCQNDELDAALSVLDDMYLINKHADVFTYTTLVDALGKKGRI 648

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA--N 435
            E  +   +M+     PTP+   T I      ++ +  +     ILE  IL  +     N
Sbjct: 649 AEATELMKKMLHKGIDPTPVTYRTVIHRYCQMEKVDDLVA----ILEKMILRQKCKTIYN 704

Query: 436 ELLVGLRNLGRLSDVRRFAEEML 458
           +++  L  LG+L +  +   ++L
Sbjct: 705 QVIEKLCGLGKLEEADKLLGKVL 727


>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
          Length = 795

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 91/377 (24%), Positives = 162/377 (42%), Gaps = 7/377 (1%)

Query: 108 GQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
           GQ L P    +N ++D L K    ++    ++ M + GV+    T+  +   YC  G+ +
Sbjct: 228 GQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGVMPDTRTYNIMIRGYCSLGQLE 287

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
           EAV     MS  G++ DVV  + L+   C+          F + V+K   P+   + ILL
Sbjct: 288 EAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILL 347

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G+  +G + +       M+   +  P    A+   +    +   VD+A+     M+   
Sbjct: 348 HGYATKGALIDVRDLLDLMIR--DGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNG 405

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
             P +  +S  + IL K      AV  ++ MV  G  L PN+I + ++I  LC+  +   
Sbjct: 406 LRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEG--LSPNIISFTSLIHGLCSIGEWKK 463

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
           V     +M+  G  PD++  N I + L K  RV E + FF  +I    +P  ++  T I 
Sbjct: 464 VEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPDVVSYNTLID 523

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 464
                 + + +I+  + ++  G+ P   + N LL G    GR+ D      EM  + +  
Sbjct: 524 GYCFVGKMDESIKQLDRMVSIGLRPDSWTYNSLLNGYFKNGRVEDALALYREMFRKDVKF 583

Query: 465 YEVTMHKLKKAFYNESR 481
             +T + +    +   R
Sbjct: 584 CAITSNIMLHGLFQAGR 600



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 84/394 (21%), Positives = 156/394 (39%), Gaps = 45/394 (11%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS----LPTFASIFDS 156
           F R    G     +++N ++  L    + ++    +  M  DG  +    + ++ ++ D 
Sbjct: 150 FRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLIHMTADGGYNCSPNVVSYNTVIDG 209

Query: 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPD 216
           +   G+ D+A   F  M   G+  DVV  NSL+  +C+ +          +   K V PD
Sbjct: 210 FFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGVMPD 269

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
             ++ I++ G+   G +E                                     EA++ 
Sbjct: 270 TRTYNIMIRGYCSLGQLE-------------------------------------EAVRL 292

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLL 336
           L+ M G    P +  +S  +    K+     A  ++D MV  G    PN  +Y+ ++   
Sbjct: 293 LKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMVRKGQK--PNSTIYHILLHGY 350

Query: 337 CNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 396
                + +V    D M+  G   +   +N++     K+  V +    F EM +N  +P  
Sbjct: 351 ATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDV 410

Query: 397 LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 456
           ++ +T I +L      E A+  +N ++  G+ P   S   L+ GL ++G    V   A E
Sbjct: 411 VSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFE 470

Query: 457 MLNRRILIYEVTMHKLKKAFYNESRSM--RDIFD 488
           M+NR I    + M+ +      E R +  +D FD
Sbjct: 471 MINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFD 504



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 95/409 (23%), Positives = 166/409 (40%), Gaps = 59/409 (14%)

Query: 78  IPTPDLVHEVLQLSYDSPSSAVD-----FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQM 132
           IP       +L  +Y +   AVD     F      G R    +++ ++ +L K GR E  
Sbjct: 371 IPFEHRAFNILICAY-AKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDA 429

Query: 133 WNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAV-MSFDVMSMHGVEQDVVAVNSLLS 190
                 M  +G+  ++ +F S+    C  G++ +   ++F++++  G+  D + +N+++ 
Sbjct: 430 VYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMIN-RGIHPDAIFMNTIMD 488

Query: 191 AICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW 249
            +C+ E +   A +F + V  I V PD  S+  L++G+   G ++E+ K    MV     
Sbjct: 489 NLCK-EGRVVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVS-IGL 546

Query: 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDI----LVKLNDS 305
            P+    Y + L    +  +V++AL   R M  ++    +KF +   +I    L +    
Sbjct: 547 RPDS-WTYNSLLNGYFKNGRVEDALALYREMFRKD----VKFCAITSNIMLHGLFQAGRI 601

Query: 306 THAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ-------------- 351
             A +L+  MV  G  L   +  YN V+G LC N  VD   R F+               
Sbjct: 602 VAARELYMKMVDRGTQL--RIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVRTFS 659

Query: 352 ---------------------MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 390
                                MV  G  PD +TY+++ +  I+   + E +  F  M KN
Sbjct: 660 IVINALLKVGRIDEAKSLFSAMVLRGPVPDVITYSLMIKSHIEEGLLEESDNLFLSMEKN 719

Query: 391 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 439
                       +  LL+  +   A      I E     LEAS   LL+
Sbjct: 720 GCAADSHMLNIIVRRLLEKGDVRRAGTYLTKIDEKN-FSLEASTAALLI 767



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 75/349 (21%), Positives = 142/349 (40%), Gaps = 21/349 (6%)

Query: 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS------RALEFLNR-VKK 211
           G+   ++A+  FD +        V A NS+L+ + R ++ +S       A+   N  V+ 
Sbjct: 26  GSLGREDALNLFDELLPQARPASVHAFNSVLTVVARADSSSSPRHSAALAVSLFNTMVRS 85

Query: 212 IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD 271
            V+       IL+  +   G ++ A   F  +  +  W  ++V      +  L  G + D
Sbjct: 86  GVNMMAAIIGILIRCFCTVGRLDLAFAAF-ALFLKTGWRVQNV-TLNQLIKGLCDGNRTD 143

Query: 272 EALKFL-RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG-IGFNLMPNLIMY 329
           +A+  + R M      P +  ++  +  L     S  A++L   M    G+N  PN++ Y
Sbjct: 144 DAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLIHMTADGGYNCSPNVVSY 203

Query: 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389
           N VI       +VD  +  F +M+  G  PD +TYN + + L K + + +       M  
Sbjct: 204 NTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFD 263

Query: 390 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 449
               P        I       + E A+ +   +  +G+ P   + + L+     +GR ++
Sbjct: 264 KGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAE 323

Query: 450 VRRFAEEMLNR----RILIYEVTMH--KLKKAFYNESRSMRDIFDSLER 492
            R   + M+ +       IY + +H    K A  +    +RD+ D + R
Sbjct: 324 ARSVFDSMVRKGQKPNSTIYHILLHGYATKGALID----VRDLLDLMIR 368


>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
          Length = 778

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 150/345 (43%), Gaps = 5/345 (1%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +N++++ L   GR E+ +     M+   +L  + ++ ++ +      K  EA    + 
Sbjct: 314 WTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEE 373

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           MS  GV+ + V  N ++   C++      +       +    PD  ++  L+ G+ K GN
Sbjct: 374 MSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGN 433

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           + EA +T  EM  R     + V    T L TL R K+++EA K L   +    F     +
Sbjct: 434 MGEAFRTMDEM-GRKNMKMDSV-TLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSY 491

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
              +    K  +   A++LWD M      ++P+ + YN +IG LC     +      +++
Sbjct: 492 GTLIVGYFKDGNVDRALKLWDEMKEK--EIIPSTVTYNCIIGGLCQCGKTEQAISKLNEL 549

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
           +  G  PD  TYN I     +   V +  +F ++M++N ++P    C   +  L      
Sbjct: 550 LESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGML 609

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           E A++++N  +  G      + N L+  L   GRL D      EM
Sbjct: 610 EKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEM 654



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 79/362 (21%), Positives = 147/362 (40%), Gaps = 40/362 (11%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G + +    N+MV    K G+ +   N +  M+E G      T+ ++ + YC AG   E
Sbjct: 377 KGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGE 436

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A  + D M    ++ D V +N++L  +CR                               
Sbjct: 437 AFRTMDEMGRKNMKMDSVTLNTILRTLCR------------------------------- 465

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
               E  +EEA K      +R  +  E  ++Y T ++   +   VD ALK    MK +  
Sbjct: 466 ----EKKLEEAYKLLSSARKRGYFIDE--VSYGTLIVGYFKDGNVDRALKLWDEMKEKEI 519

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P+   ++  +  L +   +  A+   + ++  G  L+P+   YN ++   C   DV+  
Sbjct: 520 IPSTVTYNCIIGGLCQCGKTEQAISKLNELLESG--LLPDETTYNTILHGYCREGDVEKA 577

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
           F+F ++MV +   PD  T N++   L     + +  K F+  +        +   T IT 
Sbjct: 578 FQFHNKMVENSFKPDVFTCNILLRGLCMEGMLEKALKLFNTWVSKGKAIDTVTYNTLITS 637

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 465
           L      + A  + + + E  + P   + N ++  L + GR+ +   F  +ML +  L  
Sbjct: 638 LCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGXLPX 697

Query: 466 EV 467
           +V
Sbjct: 698 QV 699



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 87/376 (23%), Positives = 155/376 (41%), Gaps = 57/376 (15%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE----------NQ 198
           TF  +   YC   K+ +AV   +VM  +    D V  N++L A+C++           + 
Sbjct: 210 TFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDALCKKGRLGDARDLLMDM 269

Query: 199 TSRAL-----------------EFLNRVKKIVD--------PDGDSFAILLEGWEKEGNV 233
            SR L                  +L     +++        PD  ++ +L+ G   EG +
Sbjct: 270 KSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRI 329

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           EEA K   EM E  +  P+ V++Y T +   +   ++ EA K L  M  +   P      
Sbjct: 330 EEAFKLRDEM-ENLKLLPD-VVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKP------ 381

Query: 294 NAL--DILVK-------LNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
           NA+  +I+VK       ++D+++ +     M   GF+  P+ + YN +I   C   ++  
Sbjct: 382 NAVTHNIMVKWYCKEGKMDDASNTIT---KMEESGFS--PDCVTYNTLINGYCKAGNMGE 436

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
            FR  D+M       DS+T N I   L + K++ E  K      K  +    ++  T I 
Sbjct: 437 AFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIV 496

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 464
                   + A+++W+ + E  I+P   + N ++ GL   G+         E+L   +L 
Sbjct: 497 GYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLP 556

Query: 465 YEVTMHKLKKAFYNES 480
            E T + +   +  E 
Sbjct: 557 DETTYNTILHGYCREG 572



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 86/386 (22%), Positives = 171/386 (44%), Gaps = 8/386 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG   +   +N++V    K G  ++  N + +M ++ +L  + T+  + +  C  G+ +E
Sbjct: 272 RGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEE 331

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILL 224
           A    D M    +  DVV+ N+L++  C + ++ S A + L  + +K V P+  +  I++
Sbjct: 332 AFKLRDEMENLKLLPDVVSYNTLING-CLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMV 390

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           + + KEG +++A+ T  +M E   ++P+ V  Y T +    +   + EA + +  M  +N
Sbjct: 391 KWYCKEGKMDDASNTITKM-EESGFSPDCV-TYNTLINGYCKAGNMGEAFRTMDEMGRKN 448

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
                   +  L  L +      A +L       G+ +  + + Y  +I     + +VD 
Sbjct: 449 MKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFI--DEVSYGTLIVGYFKDGNVDR 506

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
             + +D+M      P ++TYN I   L +  +  +     +E++++   P      T + 
Sbjct: 507 ALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILH 566

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 464
                 + E A +  N ++EN   P   + N LL GL   G L    +     +++   I
Sbjct: 567 GYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGMLEKALKLFNTWVSKGKAI 626

Query: 465 YEVTMHKLKKAFYNESRSMRDIFDSL 490
             VT + L  +   E R + D F+ L
Sbjct: 627 DTVTYNTLITSLCKEGR-LDDAFNLL 651



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 109/267 (40%), Gaps = 19/267 (7%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSF 170
           S   +N ++  L + G+ EQ  + +  + E G+L    T+ +I   YC  G  ++A    
Sbjct: 522 STVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFH 581

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEK 229
           + M  +  + DV   N LL  +C  E    +AL+  N  V K    D  ++  L+    K
Sbjct: 582 NKMVENSFKPDVFTCNILLRGLC-MEGMLEKALKLFNTWVSKGKAIDTVTYNTLITSLCK 640

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
           EG +++A     EM E+ E  P+H   Y   +  L    ++ EA +F+  M  +   P  
Sbjct: 641 EGRLDDAFNLLSEMEEK-ELGPDHY-TYNAIITALTDSGRIREAEEFMSKMLEKGXLPXQ 698

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
                    +++L+ +   V               + + Y+  I  LC      +  R F
Sbjct: 699 ---------VLQLDXNETVVTSETSEE-----SDSSSVAYSEWIKELCTEGKYKDAMRIF 744

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKR 376
            +    G   D  TY  + + LIK ++
Sbjct: 745 GESKQKGITVDKSTYINLMDGLIKRRK 771



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 76/190 (40%), Gaps = 3/190 (1%)

Query: 303 NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSL 362
           N    AV+  ++M    +N  P+ + YN ++  LC    + +       M   G  P+  
Sbjct: 222 NKFKDAVEFLNVMGK--YNCSPDNVTYNTILDALCKKGRLGDARDLLMDMKSRGLLPNRN 279

Query: 363 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 422
           TYN++     K   + E       M +N   P        I  L +    E A ++ + +
Sbjct: 280 TYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEM 339

Query: 423 LENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 482
               +LP   S N L+ G     ++S+  +  EEM  + +    VT H +   +Y +   
Sbjct: 340 ENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVT-HNIMVKWYCKEGK 398

Query: 483 MRDIFDSLER 492
           M D  +++ +
Sbjct: 399 MDDASNTITK 408


>gi|222631252|gb|EEE63384.1| hypothetical protein OsJ_18196 [Oryza sativa Japonica Group]
          Length = 378

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 151/350 (43%), Gaps = 8/350 (2%)

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206
           +  F     S+  AG+   AV  F++M  HG +  V + N LL A+  QE     A +  
Sbjct: 1   MDAFKIAIKSFAAAGEIKNAVGVFEMMRTHGFDDGVESFNCLLVALA-QEGLGREANQVF 59

Query: 207 NRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
           +R++    PD  S+  L+  W    N+ EA + + EM+E     P+ V+ + T +  L+R
Sbjct: 60  DRMRDRYAPDLRSYTALMLAWCNARNLVEAGRVWNEMLEN-GLKPD-VVVHNTMIEGLLR 117

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNL 326
           G++  EA+K   +MK +   P +  ++  +    K      A++ ++ M  +G    P++
Sbjct: 118 GQRRPEAVKMFELMKAKGPAPNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDVG--CQPDV 175

Query: 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 386
             Y  ++    N   +D V    ++M   G  PD  TYN + + L       +  + + +
Sbjct: 176 ATYTCLLVGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNALIKLLTNRNMPDDAARIYKK 235

Query: 387 MIKNEWQPTPLNCATAI-TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
           MIK   +PT       + +  L      +   +W  +   GI P   S    + G    G
Sbjct: 236 MIKKGLEPTIHTYNMMMKSYFLGGRNYMMGCAVWEEMHRKGICPDVNSYTVFINGHIRHG 295

Query: 446 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCK 495
           R  +  ++ EEM+ + +   ++  +K    F    +   DI   L ++ K
Sbjct: 296 RPEEACKYIEEMIQKGMKTPQIDYNKFAADFSKAGKP--DILYELAQKVK 343



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/305 (20%), Positives = 128/305 (41%), Gaps = 5/305 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           ++N ++  L + G   +       M++     L ++ ++  ++C A    EA   ++ M 
Sbjct: 38  SFNCLLVALAQEGLGREANQVFDRMRDRYAPDLRSYTALMLAWCNARNLVEAGRVWNEML 97

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
            +G++ DVV  N+++  + R + +      F     K   P+  ++ +L+    K G ++
Sbjct: 98  ENGLKPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPAPNVWTYTMLIRDHCKRGKMD 157

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
            A + F EM +     P+ V  Y   L+     K++D     L  M  + C P  + ++ 
Sbjct: 158 MAMRCFEEM-QDVGCQPD-VATYTCLLVGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNA 215

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI-GLLCNNDDVDNVFRFFDQMV 353
            + +L   N    A +++  M+  G  L P +  YN ++        +       +++M 
Sbjct: 216 LIKLLTNRNMPDDAARIYKKMIKKG--LEPTIHTYNMMMKSYFLGGRNYMMGCAVWEEMH 273

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G  PD  +Y +     I++ R  E  K+  EMI+   +   ++          A +P+
Sbjct: 274 RKGICPDVNSYTVFINGHIRHGRPEEACKYIEEMIQKGMKTPQIDYNKFAADFSKAGKPD 333

Query: 414 IAIEI 418
           I  E+
Sbjct: 334 ILYEL 338


>gi|125544564|gb|EAY90703.1| hypothetical protein OsI_12306 [Oryza sativa Indica Group]
          Length = 644

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 96/423 (22%), Positives = 179/423 (42%), Gaps = 12/423 (2%)

Query: 76  GIIPTPDLVHEVLQLSYDSPS---SAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQM 132
           G  P P + H +L+ +  S     S         +G  L     NL+++ + + G  ++ 
Sbjct: 141 GCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEA 200

Query: 133 WNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +R +   G  + + ++ ++    C A ++ +     D M       ++V  N+L+  
Sbjct: 201 VGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGY 260

Query: 192 ICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
           +CR      R  E L ++ +    PD   +A +++G  KEG++E AN+    M   +   
Sbjct: 261 LCRN-GLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRM-PSYGLK 318

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P +V+ Y T L  L   ++  EA + L  M  ++C      F+  +D   +       ++
Sbjct: 319 P-NVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIE 377

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
           L + M+  G   MP++I Y  VI   C    +D        M   G  P++++Y ++ + 
Sbjct: 378 LLEQMLSHG--CMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKG 435

Query: 371 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 430
           L    R  + E+   +MI+    P P+   T I  L      E AIE+   +L NG  P 
Sbjct: 436 LCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPD 495

Query: 431 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDI--FD 488
             S + ++ GL   G+  +       M+N+ I    +    +  A   E R  + I  FD
Sbjct: 496 LISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFD 555

Query: 489 SLE 491
           +++
Sbjct: 556 NIK 558



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 127/278 (45%), Gaps = 5/278 (1%)

Query: 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMS 169
           L    +N++VD   +NG  +++   +  M   G +  + T+ ++ + +C  G  DEAVM 
Sbjct: 354 LDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVML 413

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK 229
              MS  G + + V+   +L  +C               +++   P+  +F  L+    K
Sbjct: 414 LKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCK 473

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
           +G VE+A +   +M+     +P+ +++Y T +  L +  + +EAL+ L VM  +   P  
Sbjct: 474 KGLVEQAIELLKQMLVN-GCSPD-LISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNT 531

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
             +S+    L +       +Q++D +      +  + ++YNAVI  LC   + D    FF
Sbjct: 532 IIYSSIACALSREGRVNKVIQMFDNIKDT--TIRSDAVLYNAVISSLCKRWETDRAIDFF 589

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
             MV +G  P+  TY M+ + L       E ++   E+
Sbjct: 590 AYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSEL 627



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 131/294 (44%), Gaps = 7/294 (2%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSYCGAG 161
           R    G + +   +N ++  L    R+++    +  M ++D  L   TF  + D +C  G
Sbjct: 311 RMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNG 370

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSF 220
             D  +   + M  HG   DV+   ++++  C+ E     A+  L  +      P+  S+
Sbjct: 371 LVDRVIELLEQMLSHGCMPDVITYTTVINGFCK-EGLIDEAVMLLKSMSSCGCKPNTVSY 429

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
            I+L+G    G   +A +   +M++  +  P + + + T +  L +   V++A++ L+ M
Sbjct: 430 TIVLKGLCSAGRWVDAEELMSQMIQ--QGCPPNPVTFNTLINFLCKKGLVEQAIELLKQM 487

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
               C P L  +S  +D L K   +  A++L ++MV  G +  PN I+Y+++   L    
Sbjct: 488 LVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGIS--PNTIIYSSIACALSREG 545

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
            V+ V + FD +       D++ YN +   L K         FF  M+ N   P
Sbjct: 546 RVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMP 599


>gi|108709396|gb|ABF97191.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215687193|dbj|BAG91758.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625245|gb|EEE59377.1| hypothetical protein OsJ_11489 [Oryza sativa Japonica Group]
          Length = 644

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 96/423 (22%), Positives = 179/423 (42%), Gaps = 12/423 (2%)

Query: 76  GIIPTPDLVHEVLQLSYDSPS---SAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQM 132
           G  P P + H +L+ +  S     S         +G  L     NL+++ + + G  ++ 
Sbjct: 141 GCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEA 200

Query: 133 WNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +R +   G  + + ++ ++    C A ++ +     D M       ++V  N+L+  
Sbjct: 201 VGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGY 260

Query: 192 ICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
           +CR      R  E L ++ +    PD   +A +++G  KEG++E AN+    M   +   
Sbjct: 261 LCRN-GLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRM-PSYGLK 318

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P +V+ Y T L  L   ++  EA + L  M  ++C      F+  +D   +       ++
Sbjct: 319 P-NVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIE 377

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
           L + M+  G   MP++I Y  VI   C    +D        M   G  P++++Y ++ + 
Sbjct: 378 LLEQMLSHG--CMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKG 435

Query: 371 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 430
           L    R  + E+   +MI+    P P+   T I  L      E AIE+   +L NG  P 
Sbjct: 436 LCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPD 495

Query: 431 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDI--FD 488
             S + ++ GL   G+  +       M+N+ I    +    +  A   E R  + I  FD
Sbjct: 496 LISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFD 555

Query: 489 SLE 491
           +++
Sbjct: 556 NIK 558



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 127/278 (45%), Gaps = 5/278 (1%)

Query: 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMS 169
           L    +N++VD   +NG  +++   +  M   G +  + T+ ++ + +C  G  DEAVM 
Sbjct: 354 LDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVML 413

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK 229
              MS  G + + V+   +L  +C               +++   P+  +F  L+    K
Sbjct: 414 LKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCK 473

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
           +G VE+A +   +M+     +P+ +++Y T +  L +  + +EAL+ L VM  +   P  
Sbjct: 474 KGLVEQAIELLKQMLVN-GCSPD-LISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNT 531

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
             +S+    L +       +Q++D +      +  + ++YNAVI  LC   + D    FF
Sbjct: 532 IIYSSIACALSREGRVNKVIQMFDNIKDT--TIRSDAVLYNAVISSLCKRWETDRAIDFF 589

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
             MV +G  P+  TY M+ + L       E ++   E+
Sbjct: 590 AYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSEL 627



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 131/294 (44%), Gaps = 7/294 (2%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSYCGAG 161
           R    G + +   +N ++  L    R+++    +  M ++D  L   TF  + D +C  G
Sbjct: 311 RMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNG 370

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSF 220
             D  +   + M  HG   DV+   ++++  C+ E     A+  L  +      P+  S+
Sbjct: 371 LVDRVIELLEQMLSHGCMPDVITYTTVINGFCK-EGLIDEAVMLLKSMSSCGCKPNTVSY 429

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
            I+L+G    G   +A +   +M++  +  P + + + T +  L +   V++A++ L+ M
Sbjct: 430 TIVLKGLCSAGRWVDAEELMSQMIQ--QGCPPNPVTFNTLINFLCKKGLVEQAIELLKQM 487

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
               C P L  +S  +D L K   +  A++L ++MV  G +  PN I+Y+++   L    
Sbjct: 488 LVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGIS--PNTIIYSSIACALSREG 545

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
            V+ V + FD +       D++ YN +   L K         FF  M+ N   P
Sbjct: 546 RVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMP 599


>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
 gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
          Length = 695

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 86/393 (21%), Positives = 173/393 (44%), Gaps = 42/393 (10%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G +     +N ++  L ++G +++ W   + M + GV   + +F  +   +C  G+ +E
Sbjct: 159 KGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEE 218

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILL 224
           A+  +  M   G++ D+V+ + L+    R+  +   A+ +L  ++   + PDG  + +++
Sbjct: 219 ALKIYKEMRHRGIKPDLVSFSCLIGLFARR-GKMDHAMAYLREMRCFGLVPDGVIYTMVI 277

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFL----------------------- 261
            G+ + G + +A +   EMV      P+ V+ Y T L                       
Sbjct: 278 GGFCRAGLMSDALRVRDEMVG-CGCLPD-VVTYNTLLNGLCKERRLLDAEGLLNEMRERG 335

Query: 262 --------ITLIRG----KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV 309
                    TLI G     ++D+AL+    M  +   P +  ++  +D + +  D   A 
Sbjct: 336 VPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKAN 395

Query: 310 QLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFE 369
            LWD M      + PN + Y+ +I   C    V++ F F D+M+  G  P+ +TYN I +
Sbjct: 396 DLWDDMHS--REIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIK 453

Query: 370 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
              ++  V + +KF  +M+ N+  P  +   T I   +  D+   A ++ N + +  + P
Sbjct: 454 GYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQP 513

Query: 430 LEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
              + N L+ G    G + +     E+M  + I
Sbjct: 514 DVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGI 546



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 97/400 (24%), Positives = 168/400 (42%), Gaps = 44/400 (11%)

Query: 95  PSSAVDFFRWA-GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFAS 152
           P  A D +R        ++ Y  N+MV    K   F+++   +  M++  V   + T   
Sbjct: 76  PHLAADAYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNV 135

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI 212
           + D+   AG  + A+   D M   G++  +V  NS+L  +CR      +A E    +   
Sbjct: 136 MVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRS-GMWDKAWEVFKEMDDF 194

Query: 213 -VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD 271
            V PD  SF IL+ G+ + G +EEA K + EM  R    P+ ++++   +    R  ++D
Sbjct: 195 GVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHR-GIKPD-LVSFSCLIGLFARRGKMD 252

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA 331
            A+ +LR M+   CF                                   L+P+ ++Y  
Sbjct: 253 HAMAYLREMR---CF----------------------------------GLVPDGVIYTM 275

Query: 332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
           VIG  C    + +  R  D+MV  G  PD +TYN +   L K +R+ + E   +EM +  
Sbjct: 276 VIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERG 335

Query: 392 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 451
             P      T I       + + A+++++ +L   + P   + N L+ G+   G L    
Sbjct: 336 VPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKAN 395

Query: 452 RFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLE 491
              ++M +R I    VT   L  + + E   + D F  L+
Sbjct: 396 DLWDDMHSREIFPNHVTYSILIDS-HCEKGQVEDAFGFLD 434



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 83/378 (21%), Positives = 156/378 (41%), Gaps = 50/378 (13%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMK-----EDGVLSLPTFASIFDSYCGAG 161
           RG +    +++ ++ +  + G+ +     +R M+      DGV+    +  +   +C AG
Sbjct: 229 RGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVI----YTMVIGGFCRAG 284

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSF 220
              +A+   D M   G   DVV  N+LL+ +C+ E +   A   LN ++ + V PD  +F
Sbjct: 285 LMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCK-ERRLLDAEGLLNEMRERGVPPDLCTF 343

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
             L+ G+  EG +++A + F  M+ +    P+ ++ Y T +  + R   +D+A      M
Sbjct: 344 TTLIHGYCIEGKLDKALQLFDTMLNQ-RLRPD-IVTYNTLIDGMCRQGDLDKANDLWDDM 401

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
                FP    +S  +D   +      A    D M+  G  ++PN++ YN++I   C + 
Sbjct: 402 HSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKG--ILPNIMTYNSIIKGYCRSG 459

Query: 341 DVDNVFRFFDQMV-----------------------FHGAF------------PDSLTYN 365
           +V    +F  +M+                        H AF            PD +TYN
Sbjct: 460 NVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYN 519

Query: 366 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 425
           M+      +  V E    F +M     +P      + I   + A   + A ++ + +L+ 
Sbjct: 520 MLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQR 579

Query: 426 GILPLEASANELLVGLRN 443
           G     A+     V ++N
Sbjct: 580 GKEKRRAAGTVQFVNIQN 597


>gi|449451888|ref|XP_004143692.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
 gi|449529106|ref|XP_004171542.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
          Length = 783

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 93/395 (23%), Positives = 169/395 (42%), Gaps = 44/395 (11%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           + + LSP  + +N++V    + G  ++    + +M  + +L ++ T+  + + +C  GK 
Sbjct: 275 KSKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGKI 334

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAI 222
           DEA    D M    V  DVV  N+L+   C Q   +S     +  + KK V  +  ++ I
Sbjct: 335 DEAFRIRDEMEKMNVLPDVVTYNTLIDG-CSQWRDSSEVYSLIEEMDKKGVKCNAVTYNI 393

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           +L+   K+GN+ EA  T  +M E    +P+ V  Y T +    +  ++ +A + +  M  
Sbjct: 394 ILKWMCKKGNMTEATTTLDKM-EENGLSPDCV-TYNTLIGAYCKAGKMGKAFRMMDEMTS 451

Query: 283 E-------------NCFPTLKFFSNALDILV----------------------KLNDSTH 307
           +             +C    K    A ++L                       K      
Sbjct: 452 KGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGILILGYFKDEKGDR 511

Query: 308 AVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMI 367
           A+ LWD M      +MP+ I YN+VIG LC +  VD      ++M+ +G  PD  TYN+I
Sbjct: 512 ALNLWDEMKE--RQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNII 569

Query: 368 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 427
                    V +  +F +EMI+N ++P    C   +  L      E A++++N ++  G 
Sbjct: 570 IHGFCLEGNVEKAFQFHNEMIENLFKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKGK 629

Query: 428 LPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
                + N ++  L   G+  +      EM  +++
Sbjct: 630 DIDVVTYNTIISSLCKEGKFENAYDLLTEMEAKKL 664



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/302 (23%), Positives = 133/302 (44%), Gaps = 7/302 (2%)

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE---FLNRVKKIVDPDGDSFAI 222
           A   F+ M       +++  N+L++++ R  + +S  L      + +K  V P+ +SF I
Sbjct: 159 ATQIFNKMKRLNYRPNLLTCNTLMNSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFNI 218

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+ G+  E  V++A     +M E F   P+ V +Y T L  L++ + + EA   L  MK 
Sbjct: 219 LIYGYCLESKVKDALDWVNKMSE-FGCVPDTV-SYNTILDALLKRRLLQEARDLLLDMKS 276

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
           +   P    ++  +    +L     A ++ +IM     NL+P +  YN ++   CN+  +
Sbjct: 277 KGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTR--NNLLPTVWTYNMLVNGFCNDGKI 334

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
           D  FR  D+M      PD +TYN + +   + +   EV     EM K   +   +     
Sbjct: 335 DEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYNII 394

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
           +  +        A    + + ENG+ P   + N L+      G++    R  +EM ++ +
Sbjct: 395 LKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKGL 454

Query: 463 LI 464
            I
Sbjct: 455 KI 456



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 96/444 (21%), Positives = 178/444 (40%), Gaps = 52/444 (11%)

Query: 93  DSPSSAVDFFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED---GVL-SL 147
           D P  A   F    R   R +    N +++ L +      +  A +V+K+    GV+ + 
Sbjct: 154 DQPHLATQIFNKMKRLNYRPNLLTCNTLMNSLVRYPSSSSILLARQVLKDSIKLGVVPNT 213

Query: 148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC-RQENQTSRALEFL 206
            +F  +   YC   K  +A+   + MS  G   D V+ N++L A+  R+  Q +R L  L
Sbjct: 214 NSFNILIYGYCLESKVKDALDWVNKMSEFGCVPDTVSYNTILDALLKRRLLQEARDL-LL 272

Query: 207 NRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
           +   K + P+  ++ +L+ G+ + G ++EA K   E++ R    P  V  Y   +     
Sbjct: 273 DMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKVI-EIMTRNNLLPT-VWTYNMLVNGFCN 330

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM--VGIGFN--- 321
             ++DEA +    M+  N  P +  ++  +D   +  DS+    L + M   G+  N   
Sbjct: 331 DGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVT 390

Query: 322 ----------------------------LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
                                       L P+ + YN +IG  C    +   FR  D+M 
Sbjct: 391 YNIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMT 450

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G   D+ T N I  CL   K++ E         K  +    ++    I      ++ +
Sbjct: 451 SKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGILILGYFKDEKGD 510

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL----IYEVTM 469
            A+ +W+ + E  I+P   + N ++ GL    ++        EML   ++     Y + +
Sbjct: 511 RALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIII 570

Query: 470 H------KLKKAFYNESRSMRDIF 487
           H       ++KAF   +  + ++F
Sbjct: 571 HGFCLEGNVEKAFQFHNEMIENLF 594



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 73/358 (20%), Positives = 154/358 (43%), Gaps = 40/358 (11%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G + +   +N+++  + K G   +    +  M+E+G+     T+ ++  +YC AGK  +
Sbjct: 382 KGVKCNAVTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGK 441

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A    D M+  G++ D   +N++L  +C ++          +  K+    D  S+ IL+ 
Sbjct: 442 AFRMMDEMTSKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGILIL 501

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+ K+   + A   + EM ER +  P   + Y + +  L + ++VD+A+           
Sbjct: 502 GYFKDEKGDRALNLWDEMKER-QIMPS-TITYNSVIGGLCQSRKVDQAID---------- 549

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
                          KLN+          M+  G  L+P+   YN +I   C   +V+  
Sbjct: 550 ---------------KLNE----------MLENG--LVPDETTYNIIIHGFCLEGNVEKA 582

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
           F+F ++M+ +   PD  T N++   L +   + +  K F+ ++        +   T I+ 
Sbjct: 583 FQFHNEMIENLFKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKGKDIDVVTYNTIISS 642

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
           L    + E A ++   +    + P + +   ++  L + GR+ +   F  +M+   I+
Sbjct: 643 LCKEGKFENAYDLLTEMEAKKLGPDQYTYKVIIAALTDAGRIKEAEEFTLKMVESGIV 700



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 129/295 (43%), Gaps = 26/295 (8%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           + RG  L   ++ +++    K+ + ++  N    MKE  ++ S  T+ S+    C + K 
Sbjct: 485 SKRGYILDEVSYGILILGYFKDEKGDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKV 544

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAI 222
           D+A+   + M  +G+  D    N ++   C + N   +A +F N  ++ +  PD  +  I
Sbjct: 545 DQAIDKLNEMLENGLVPDETTYNIIIHGFCLEGN-VEKAFQFHNEMIENLFKPDVYTCNI 603

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           LL G  +EG +E+A K F  +V + +     V+ Y T + +L +  + + A   L  M+ 
Sbjct: 604 LLRGLCREGMLEKALKLFNTLVSKGK--DIDVVTYNTIISSLCKEGKFENAYDLLTEMEA 661

Query: 283 ENCFP---TLKFFSNALDILVKLNDS---------THAVQLWDIMVGIGFNLMPN----- 325
           +   P   T K    AL    ++ ++         +  V   ++ +G G N++ +     
Sbjct: 662 KKLGPDQYTYKVIIAALTDAGRIKEAEEFTLKMVESGIVHDQNLKLGKGQNVLTSEVSEH 721

Query: 326 ----LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
                I Y+  I  LCN     +    F ++   G   +  TY  + E LIK ++
Sbjct: 722 FDFKSIAYSDQINELCNQHKYKDAMHLFVEVTKEGVALNKYTYLNLMEGLIKRRK 776


>gi|297719649|ref|NP_001172186.1| Os01g0151900 [Oryza sativa Japonica Group]
 gi|9663979|dbj|BAB03620.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|13872936|dbj|BAB44041.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|215768885|dbj|BAH01114.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255672883|dbj|BAH90916.1| Os01g0151900 [Oryza sativa Japonica Group]
          Length = 534

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 94/407 (23%), Positives = 181/407 (44%), Gaps = 29/407 (7%)

Query: 82  DLVHEVLQLSYDSPSSAVDFFRWAG------RGQRLSPYAWNLMVDVLGKNGR---FEQM 132
           D+V +VLQ    +   A+ FF+WA        G R    A+  M+D+LG+  +     Q+
Sbjct: 113 DVVLKVLQKQRSNWKVALSFFKWAAGLPQYNHGSR----AYTEMLDILGRMKKVRLMRQL 168

Query: 133 WNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI 192
           ++ + V     V++   FA + + Y GA K  EA+  F     +G E D+V    LL ++
Sbjct: 169 FDEIPVESRQSVVTNRMFAVLLNRYAGAHKVQEAIDMFYKRKDYGFELDLVGFQILLMSL 228

Query: 193 CRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
           CR ++       FL + K    P   S+ I+L GW  +G++ +A + + E++   +  P+
Sbjct: 229 CRYKHVEEAEALFLQK-KDEFPPVIKSWNIILNGWCVKGSLADAKRVWNEIIAS-KLKPD 286

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
            +  Y TF+ +L +  ++  A+K    M  +   P +   +  +D L        A++++
Sbjct: 287 -LFTYGTFINSLTKSGKLSTAVKLFTSMWEKGINPDVAICNCIIDQLCFKKRIPEALEIF 345

Query: 313 DIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 372
             M   G     ++  YN +I   C  + ++ V+   D M   G  P+++TY+ I +   
Sbjct: 346 GEMNDRG--CQADVATYNTLIKHFCKINRMEKVYELLDDMEVKGVSPNNMTYSYILKTTE 403

Query: 373 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 432
           K K   +V      M K+  +         + + +  D  +    +W+ +  NG  P + 
Sbjct: 404 KPK---DVISLMQRMEKSGCRLDSDTYNLILNLYVSWDYEKGVQLVWDEMERNGSGPDQR 460

Query: 433 SANELLVGLRNLGRLSDVRRFAEEMLNR--------RILIYEVTMHK 471
           S   ++ GL +  +L +   +   M +R        ++L+  + M K
Sbjct: 461 SFTIMVHGLHSHDKLDEALHYYRTMESRGMTPEPRTKLLVKAIRMKK 507


>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
          Length = 586

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 88/386 (22%), Positives = 170/386 (44%), Gaps = 13/386 (3%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y  N++++      R    ++ + +++K     ++ TF ++    C  GK  E +  FD 
Sbjct: 104 YTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDK 163

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEG 231
           M   G + +VV   +L++ +C+    TS A+  L  +++    PD   +  +++   K+ 
Sbjct: 164 MIGEGFQPNVVTYGTLINGLCKV-GSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDR 222

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            V +A   F EM+ +   +P  +  Y + +  L    +       L  M      P +  
Sbjct: 223 QVTQAFNLFSEMIHQ-GISPS-IFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVI 280

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           FS  +D L K      A  + D+M+  G    PN++ YNA++   C   ++D   + FD 
Sbjct: 281 FSTVVDALCKEGKVMEAHDVVDMMIKRGVE--PNVVTYNALMDGHCLRSEMDEAVKVFDT 338

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           MV  G  PD ++Y+ +     K +R+ +    F EM + E  P  +  +T +  L     
Sbjct: 339 MVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGR 398

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNRRILIYEV 467
            + AI +++ ++  G +P   S   LL  L    RL +     + +    ++  I IY +
Sbjct: 399 LQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTI 458

Query: 468 TMHKLKKAFYNESRSMRDIFDSLERR 493
            +  + +A   E  + RD+F +L  +
Sbjct: 459 VIDGMCRA--GELEAARDLFSNLSSK 482



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/344 (22%), Positives = 146/344 (42%), Gaps = 40/344 (11%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           ++ +VD L K G+  +  + V +M + GV  ++ T+ ++ D +C   + DEAV  FD M 
Sbjct: 281 FSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMV 340

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G   DVV+ ++L++  C+ +        F    +K + P+  +++ L+ G    G ++
Sbjct: 341 CKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQ 400

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           +A   F EMV R +  P+ V +Y   L  L + +++DEA+  L+ ++G N          
Sbjct: 401 DAIALFHEMVTRGQI-PDFV-SYCILLDYLCKNRRLDEAIALLKAIEGSN---------- 448

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
                                      + P++ +Y  VI  +C   +++     F  +  
Sbjct: 449 ---------------------------MDPDIQIYTIVIDGMCRAGELEAARDLFSNLSS 481

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 414
            G  P+  TY ++   L +   + E  K F EM +  + P            L  +E   
Sbjct: 482 KGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLR 541

Query: 415 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
            I++   +L  G     +++  L+  L + G    V++   E L
Sbjct: 542 GIQLLQEMLARGFSADVSTSTVLVEMLSDDGLDQSVKQILSEFL 585



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 55/264 (20%), Positives = 102/264 (38%), Gaps = 6/264 (2%)

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            +++A  +F  M+      P  +  +   LI++ + K     L     M      P +  
Sbjct: 48  TLDDALSSFNRMLHMHP--PPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYT 105

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
            +  ++    L     A  +   ++ +G    PN+  +N +I  LC    +  V   FD+
Sbjct: 106 LNILINSFCHLQRLGFAFSVLAKILKLGHQ--PNIATFNTLIRGLCVEGKIGEVLHLFDK 163

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M+  G  P+ +TY  +   L K        +    M +   QP  +   + I  L    +
Sbjct: 164 MIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQ 223

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK 471
              A  +++ ++  GI P   + N L+  L NL     V     EM+N +I+   V    
Sbjct: 224 VTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFST 283

Query: 472 LKKAFYNESRSM--RDIFDSLERR 493
           +  A   E + M   D+ D + +R
Sbjct: 284 VVDALCKEGKVMEAHDVVDMMIKR 307


>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Brachypodium distachyon]
          Length = 757

 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 130/289 (44%), Gaps = 4/289 (1%)

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
           ++  MS  G+E DVV  N+++ A+CR     +  L         V PD  +F  L+EG+ 
Sbjct: 183 AYTEMSSQGIEPDVVTFNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFV 242

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           +EG++E A +    M E    +P  V      +    +  +V +AL +++    +   P 
Sbjct: 243 EEGSIEAALRLKARMSE-MGCSPTSV-TVNVLINGYCKLGRVGDALGYIQQEIADGFEPD 300

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
              FS  ++ L +     HA+++  +M+  G    P++  Y+ VI  LCNN +++     
Sbjct: 301 RVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCE--PDVYTYSTVINCLCNNGELEEAKGI 358

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
            +QMV  G  PD+ T+N +   L    ++ E      E+      P        I  L  
Sbjct: 359 VNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCK 418

Query: 409 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
             +P +A+ ++  +  +G  P E + N L+  L + G+L+      +EM
Sbjct: 419 VGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEM 467



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/330 (24%), Positives = 149/330 (45%), Gaps = 11/330 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           ++  V+ L +NG  +     + +M ++G    + T++++ +  C  G+ +EA    + M 
Sbjct: 304 FSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMV 363

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNV 233
             G   D    N+L+ A+C  ENQ   AL+    +  K + P+  +F IL+    K G+ 
Sbjct: 364 DSGCLPDTTTFNTLIVALC-TENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDP 422

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
             A + F EM +     P+ V  Y   +  L    ++ +AL  L+ M+   C  +   ++
Sbjct: 423 HLAVRLFEEM-KSSGCTPDEV-TYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYN 480

Query: 294 NALDILVKLNDSTHAVQLWDIM--VGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
             +D L K      A +++D M   GIG     N I +N +I  LCN + +D+     DQ
Sbjct: 481 TIIDGLCKRRRIEEAEEVFDQMDVTGIG----RNAITFNTLIDGLCNAERIDDAAELVDQ 536

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M+  G  P+++TYN I     K   + +       M  N ++   +  AT I  L  A  
Sbjct: 537 MISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCKARR 596

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGL 441
            + A+++   +   G+ P   + N ++  L
Sbjct: 597 TQAALKLLRGMRMKGMKPTPKAYNPVIQSL 626



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 98/418 (23%), Positives = 175/418 (41%), Gaps = 45/418 (10%)

Query: 91  SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPT 149
           ++D  S+ +D F     G + +   +N ++ VL +  + + + +A   M   G+   + T
Sbjct: 144 AFDLVSNQLDMF-----GVQANTEVYNHLLTVLAEGSKIKLLESAYTEMSSQGIEPDVVT 198

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F ++ D+ C A +   AV+  + MS   V  D     +L+     +E     AL    R+
Sbjct: 199 FNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFV-EEGSIEAALRLKARM 257

Query: 210 KKI-VDPDGDSFAILLEGWEKEGNVEEA-NKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            ++   P   +  +L+ G+ K G V +A      E+ + FE  P+ V  + TF+  L + 
Sbjct: 258 SEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFE--PDRV-TFSTFVNGLCQN 314

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG-------F 320
             VD ALK L +M  E C P +  +S  ++ L    +   A  + + MV  G       F
Sbjct: 315 GHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTF 374

Query: 321 N--------------------------LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
           N                          L PN+  +N +I  LC   D     R F++M  
Sbjct: 375 NTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKS 434

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 414
            G  PD +TYN++ + L  + ++ +      EM  +    + +   T I  L      E 
Sbjct: 435 SGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEE 494

Query: 415 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
           A E+++ +   GI     + N L+ GL N  R+ D     ++M++  +    VT + +
Sbjct: 495 AEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSI 552



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/346 (21%), Positives = 138/346 (39%), Gaps = 6/346 (1%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y ++ +++ L  NG  E+    V  M + G L    TF ++  + C   + +EA+     
Sbjct: 337 YTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARE 396

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           +++ G+  +V   N L++A+C+  +       F         PD  ++ IL++     G 
Sbjct: 397 LTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGK 456

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           + +A     EM       P+  + Y T +  L + ++++EA +    M           F
Sbjct: 457 LAKALDLLKEM--EVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITF 514

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  +D L        A +L D M+  G  L PN + YN+++   C   ++         M
Sbjct: 515 NTLIDGLCNAERIDDAAELVDQMISEG--LQPNNVTYNSILTHYCKQGNISKAADILQTM 572

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
             +G   D +TY  +   L K +R     K    M     +PTP      I  L   +  
Sbjct: 573 TANGFEVDVVTYATLINGLCKARRTQAALKLLRGMRMKGMKPTPKAYNPVIQSLFRGNNG 632

Query: 413 EIAIEIWNYILENGILPLEASANELLVGL-RNLGRLSDVRRFAEEM 457
             A+ ++  + E G  P   +   +  GL R  G + +   F  EM
Sbjct: 633 RDALSLFREMTEVGGPPDAFTYKIVFRGLCRGGGPIKEAFDFLVEM 678


>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Brachypodium distachyon]
          Length = 651

 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 88/377 (23%), Positives = 169/377 (44%), Gaps = 8/377 (2%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
           N+MVD   + G  E     +  M   G+   L T+ S+       G++D+A   F  M  
Sbjct: 198 NVMVDARFRAGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDA 257

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVE 234
            GV  DV + N L+   CR   +   AL F   ++ + V PD  SF+ L+  + + G ++
Sbjct: 258 CGVAPDVRSFNMLIGGFCRA-GELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMD 316

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
            A +   EM E F   P+ V+ Y   +    R   + EAL+    M    C P +  ++ 
Sbjct: 317 HAAEYLREMRE-FGLMPDGVI-YTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNT 374

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
            L+ L K    + A +L + M   G  + P+L  +  +I   C + +++   +FFD +  
Sbjct: 375 LLNGLCKERRLSDAEELLNEMKERG--VPPDLCTFTTLIHGYCRDGNIEKALQFFDTISD 432

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 414
               PD +TYN + + + +   + +  + + +M   E  P  +  +  I    +  + + 
Sbjct: 433 QRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDN 492

Query: 415 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKK 474
           A    + ++  GI+P   + N ++ G    G +S  ++F  +M + +++   +T + L  
Sbjct: 493 AFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIH 552

Query: 475 AFYNESRSMRDIFDSLE 491
            +  E + M + F+ L+
Sbjct: 553 GYVKEGK-MHEAFNLLK 568



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 90/393 (22%), Positives = 169/393 (43%), Gaps = 42/393 (10%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G +     +N ++  L +NGR+++     R M   GV   + +F  +   +C AG+ +E
Sbjct: 223 KGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRAGELEE 282

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILL 224
           A+  +  M    V  DVV+ + L+    R+  +   A E+L  +++  + PDG  + +++
Sbjct: 283 ALRFYKEMRGRRVTPDVVSFSCLIGLFTRR-GEMDHAAEYLREMREFGLMPDGVIYTMVI 341

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFL----------------------- 261
            G+ + G + EA +   EMV  F   P+ V+ Y T L                       
Sbjct: 342 GGFCRAGLMLEALRVRDEMVA-FGCLPD-VVTYNTLLNGLCKERRLSDAEELLNEMKERG 399

Query: 262 --------ITLIRG----KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV 309
                    TLI G      +++AL+F   +  +   P +  ++  +D + +  D   A 
Sbjct: 400 VPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKAN 459

Query: 310 QLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFE 369
           +LWD M      + PN + Y+ +I   C    VDN F F D+MV  G  P+ +TYN I +
Sbjct: 460 ELWDDMHS--REIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIK 517

Query: 370 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
              ++  V + ++F  +M  ++  P  +   T I   +   +   A  +   +    + P
Sbjct: 518 GYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQP 577

Query: 430 LEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
              + N ++ G    G + +     ++M  R I
Sbjct: 578 DAVTYNMIISGFSVHGNMQEADWVYKKMGARGI 610



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 143/331 (43%), Gaps = 4/331 (1%)

Query: 138 VMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           V+  +  ++  T   +  SYC   ++ E       M    V  DVV  N ++ A  R  +
Sbjct: 150 VLSSNSEVNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARFRAGD 209

Query: 198 QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
             +      + V K + P   ++  +L+G  + G  ++A + F  M +     P+ V ++
Sbjct: 210 VEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAM-DACGVAPD-VRSF 267

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317
              +    R  +++EAL+F + M+G    P +  FS  + +  +  +  HA +    M  
Sbjct: 268 NMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMRE 327

Query: 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
             F LMP+ ++Y  VIG  C    +    R  D+MV  G  PD +TYN +   L K +R+
Sbjct: 328 --FGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRL 385

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 437
            + E+  +EM +    P      T I         E A++ ++ I +  + P   + N L
Sbjct: 386 SDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTL 445

Query: 438 LVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 468
           + G+   G L       ++M +R I    VT
Sbjct: 446 IDGMCRQGDLGKANELWDDMHSREIFPNHVT 476



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 89/375 (23%), Positives = 169/375 (45%), Gaps = 53/375 (14%)

Query: 98  AVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKE-----DGVLSLPTF 150
           A+ F++   RG+R++P   +++ ++ +  + G  +     +R M+E     DGV+    +
Sbjct: 283 ALRFYKEM-RGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVI----Y 337

Query: 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK 210
             +   +C AG   EA+   D M   G   DVV  N+LL+ +C+ E + S A E LN +K
Sbjct: 338 TMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCK-ERRLSDAEELLNEMK 396

Query: 211 -KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
            + V PD  +F  L+ G+ ++GN+E+A + F  + ++    P+ ++ Y T +  + R   
Sbjct: 397 ERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQ-RLRPD-IVTYNTLIDGMCRQGD 454

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY 329
           + +A +    M     FP    +S  +D   +     +A    D MV  G  ++PN++ Y
Sbjct: 455 LGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKG--IVPNIMTY 512

Query: 330 NAVIGLLCNNDDVDNVFRFFDQM--------------VFHG---------AF-------- 358
           N++I   C + +V    +F  +M              + HG         AF        
Sbjct: 513 NSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMEN 572

Query: 359 ----PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 414
               PD++TYNMI      +  + E +  + +M     +P      + I   + A   + 
Sbjct: 573 ENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGIEPDRYTYMSMINGHVVAGNSKK 632

Query: 415 AIEIWNYILENGILP 429
           + ++ + +L+ G+ P
Sbjct: 633 SFQLHDEMLQKGLAP 647



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 83/385 (21%), Positives = 169/385 (43%), Gaps = 8/385 (2%)

Query: 95  PSSAVDFFRWA-GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFAS 152
           P    D +R        ++ Y  N+MV    K  +F ++   +  M++  V   + T   
Sbjct: 140 PHLTADAYRLVLSSNSEVNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNV 199

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI 212
           + D+   AG  + A+   D M   G++  +V  NS+L  + R   +  +A E    +   
Sbjct: 200 MVDARFRAGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRN-GRWDKAREVFRAMDAC 258

Query: 213 -VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD 271
            V PD  SF +L+ G+ + G +EEA + + EM  R    P+ V+++   +    R  ++D
Sbjct: 259 GVAPDVRSFNMLIGGFCRAGELEEALRFYKEMRGR-RVTPD-VVSFSCLIGLFTRRGEMD 316

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA 331
            A ++LR M+     P    ++  +    +      A+++ D MV   F  +P+++ YN 
Sbjct: 317 HAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVA--FGCLPDVVTYNT 374

Query: 332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
           ++  LC    + +     ++M   G  PD  T+  +     ++  + +  +FF  +    
Sbjct: 375 LLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQR 434

Query: 392 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 451
            +P  +   T I  +    +   A E+W+ +    I P   + + L+      G++ +  
Sbjct: 435 LRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAF 494

Query: 452 RFAEEMLNRRILIYEVTMHKLKKAF 476
            F +EM+N+ I+   +T + + K +
Sbjct: 495 AFLDEMVNKGIVPNIMTYNSIIKGY 519


>gi|383176220|gb|AFG71632.1| hypothetical protein 2_10152_01, partial [Pinus taeda]
          Length = 144

 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/134 (40%), Positives = 80/134 (59%)

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
           VD V R  D+MV++G FPD  TYN IFE LI  ++V E    F EM KNE+ P   N   
Sbjct: 11  VDFVDRLLDEMVYNGIFPDFKTYNTIFEGLITARKVEEASIIFREMTKNEFCPLYDNYVM 70

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461
           AI M L+AD+PE+A+ +W ++++  I P    A  L+    +LGR+S+  +++ + + R 
Sbjct: 71  AIKMYLEADDPEMAVTMWKHMIQKAIFPKSDCAAILVDWFCDLGRVSEAVKYSMDAIARG 130

Query: 462 ILIYEVTMHKLKKA 475
           + +   T  KLKKA
Sbjct: 131 VQLPVETTTKLKKA 144


>gi|12583808|gb|AAG59660.1|AC084319_18 putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
          Length = 772

 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 96/423 (22%), Positives = 179/423 (42%), Gaps = 12/423 (2%)

Query: 76  GIIPTPDLVHEVLQLSYDSPS---SAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQM 132
           G  P P + H +L+ +  S     S         +G  L     NL+++ + + G  ++ 
Sbjct: 141 GCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEA 200

Query: 133 WNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +R +   G  + + ++ ++    C A ++ +     D M       ++V  N+L+  
Sbjct: 201 VGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGY 260

Query: 192 ICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
           +CR      R  E L ++ +    PD   +A +++G  KEG++E AN+    M   +   
Sbjct: 261 LCRN-GLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRM-PSYGLK 318

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P +V+ Y T L  L   ++  EA + L  M  ++C      F+  +D   +       ++
Sbjct: 319 P-NVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIE 377

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
           L + M+  G   MP++I Y  VI   C    +D        M   G  P++++Y ++ + 
Sbjct: 378 LLEQMLSHG--CMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKG 435

Query: 371 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 430
           L    R  + E+   +MI+    P P+   T I  L      E AIE+   +L NG  P 
Sbjct: 436 LCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPD 495

Query: 431 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDI--FD 488
             S + ++ GL   G+  +       M+N+ I    +    +  A   E R  + I  FD
Sbjct: 496 LISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFD 555

Query: 489 SLE 491
           +++
Sbjct: 556 NIK 558



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 127/278 (45%), Gaps = 5/278 (1%)

Query: 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMS 169
           L    +N++VD   +NG  +++   +  M   G +  + T+ ++ + +C  G  DEAVM 
Sbjct: 354 LDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVML 413

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK 229
              MS  G + + V+   +L  +C               +++   P+  +F  L+    K
Sbjct: 414 LKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCK 473

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
           +G VE+A +   +M+     +P+ +++Y T +  L +  + +EAL+ L VM  +   P  
Sbjct: 474 KGLVEQAIELLKQMLVN-GCSPD-LISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNT 531

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
             +S+    L +       +Q++D +      +  + ++YNAVI  LC   + D    FF
Sbjct: 532 IIYSSIACALSREGRVNKVIQMFDNIKDT--TIRSDAVLYNAVISSLCKRWETDRAIDFF 589

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
             MV +G  P+  TY M+ + L       E ++   E+
Sbjct: 590 AYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSEL 627



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 81/370 (21%), Positives = 157/370 (42%), Gaps = 42/370 (11%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSYCGAG 161
           R    G + +   +N ++  L    R+++    +  M ++D  L   TF  + D +C  G
Sbjct: 311 RMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNG 370

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSF 220
             D  +   + M  HG   DV+   ++++  C+ E     A+  L  +      P+  S+
Sbjct: 371 LVDRVIELLEQMLSHGCMPDVITYTTVINGFCK-EGLIDEAVMLLKSMSSCGCKPNTVSY 429

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
            I+L+G    G   +A +   +M++  +  P + + + T +  L +   V++A++ L+ M
Sbjct: 430 TIVLKGLCSAGRWVDAEELMSQMIQ--QGCPPNPVTFNTLINFLCKKGLVEQAIELLKQM 487

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
               C P L  +S  +D L K   +  A++L ++MV  G +  PN I+Y+++   L    
Sbjct: 488 LVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGIS--PNTIIYSSIACALSREG 545

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
            V+ V + FD +       D++ YN +   L K                  W        
Sbjct: 546 RVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCK-----------------RW-------- 580

Query: 401 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
                     E + AI+ + Y++ NG +P E++   L+ GL + G   + +    E+ +R
Sbjct: 581 ----------ETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSR 630

Query: 461 RILIYEVTMH 470
             L   +  H
Sbjct: 631 GALRKHLMRH 640


>gi|326500244|dbj|BAK06211.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 600

 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 154/324 (47%), Gaps = 13/324 (4%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR--QENQTSRALEFLN 207
           ++ +   YC  G+++     F+ MS  G+E DVV   +L+ ++CR  +  + +R ++ + 
Sbjct: 167 YSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMT 226

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
             ++ ++P+  ++ +L+    KEG+V EA      M E+    P+ V+ Y T +  L   
Sbjct: 227 --ERGLEPNVVTYNVLINSMCKEGSVREALDLRKNMSEK-GVQPD-VVTYNTLITGLSSV 282

Query: 268 KQVDEALKFL-RVMKGEN-CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN 325
            ++DEA+  L  +M+GE    P L  F++ +  L K+     A+Q+  +M   G     N
Sbjct: 283 LEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRC--N 340

Query: 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 385
           L+ +N +IG L     V       D+M   G  PDS TY+++     K ++V   E +  
Sbjct: 341 LVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSILINGFCKMRQVERAESYLS 400

Query: 386 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV-GLRNL 444
           EM     +P P++    +  + D      A +++N +  N    L+A+A   ++ G    
Sbjct: 401 EMRHQGMEPEPVHYIPLLKAMCDQGMMGQARDLFNEMDRN--CKLDAAAYSTMIHGAFKS 458

Query: 445 GRLSDVRRFAEEMLNRRILIYEVT 468
           G       F ++M++  ++   VT
Sbjct: 459 GEKKIAEEFLKDMIDEGLIPDAVT 482



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 87/391 (22%), Positives = 173/391 (44%), Gaps = 16/391 (4%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMK-EDGVLSLP---TFASIFDSYCGAGKYDEAVMSF 170
           ++N ++  L + G  +     +RVM  E  + S P   ++ ++  + C   +  +AV   
Sbjct: 58  SYNTVLAALCRQGCLDAALFLLRVMSHEPRLASRPNAISYTTLMRALCADRRAAQAVGLL 117

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEK 229
             M   GV  DVV   +L+  +C   +    A+E LN + +  ++P+   ++ LL G+ K
Sbjct: 118 RSMQDCGVRPDVVTYGTLIRGLCDAAD-VDTAVELLNEMCESGIEPNVVVYSCLLHGYCK 176

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
            G  E   K F EM  R    P+ V+ Y   + +L R  +V +A + + +M      P +
Sbjct: 177 TGRWESVGKVFEEMSGR-GIEPD-VVMYTALIDSLCRHGKVKKAARVMDMMTERGLEPNV 234

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
             ++  ++ + K      A+ L   M   G    P+++ YN +I  L +  ++D      
Sbjct: 235 VTYNVLINSMCKEGSVREALDLRKNMSEKGVQ--PDVVTYNTLITGLSSVLEMDEAMALL 292

Query: 350 DQMVFHG---AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406
           ++M   G     PD +T+N +   L K   + +  +    M +N  +   +     I  L
Sbjct: 293 EEM-MQGETRVRPDLMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFNLLIGGL 351

Query: 407 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYE 466
           L   + + A+E+ + +  +G+ P   + + L+ G   + ++     +  EM ++ +    
Sbjct: 352 LRVHKVKKAMELMDEMASSGLQPDSFTYSILINGFCKMRQVERAESYLSEMRHQGMEPEP 411

Query: 467 VTMHKLKKAFYNESR--SMRDIFDSLERRCK 495
           V    L KA  ++      RD+F+ ++R CK
Sbjct: 412 VHYIPLLKAMCDQGMMGQARDLFNEMDRNCK 442



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 76/376 (20%), Positives = 146/376 (38%), Gaps = 39/376 (10%)

Query: 125 KNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV 183
           K GR+E +      M   G+   +  + ++ DS C  GK  +A    D+M+  G+E +VV
Sbjct: 176 KTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLEPNVV 235

Query: 184 AVNSLLSAICRQENQTSRALEFL-NRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
             N L++++C+ E     AL+   N  +K V PD  ++  L+ G      ++EA     E
Sbjct: 236 TYNVLINSMCK-EGSVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEE 294

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
           M++        ++ + + +  L +   + +AL+   +M    C   L  F+  +  L+++
Sbjct: 295 MMQGETRVRPDLMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRV 354

Query: 303 NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFP--- 359
           +    A++L D M   G  L P+   Y+ +I   C    V+    +  +M   G  P   
Sbjct: 355 HKVKKAMELMDEMASSG--LQPDSFTYSILINGFCKMRQVERAESYLSEMRHQGMEPEPV 412

Query: 360 -------------------------------DSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
                                          D+  Y+ +     K+      E+F  +MI
Sbjct: 413 HYIPLLKAMCDQGMMGQARDLFNEMDRNCKLDAAAYSTMIHGAFKSGEKKIAEEFLKDMI 472

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
                P  +  +  I M   + +   A  +   +  +G +P  A  + L+ G    G   
Sbjct: 473 DEGLIPDAVTYSIPINMFAKSGDLAAAERVLKQMTASGFVPDVAVFDSLIQGYGAKGDTE 532

Query: 449 DVRRFAEEMLNRRILI 464
            +     EM  + + +
Sbjct: 533 KILELTREMTAKDVAL 548



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 115/273 (42%), Gaps = 13/273 (4%)

Query: 180 QDVVAVNSLLSAICRQENQTSRALEFLNRV-----KKIVDPDGDSFAILLEGWEKEGNVE 234
           +D V+ N++L+A+CRQ      A  FL RV     +    P+  S+  L+     +    
Sbjct: 54  RDAVSYNTVLAALCRQ--GCLDAALFLLRVMSHEPRLASRPNAISYTTLMRALCADRRAA 111

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           +A      M +     P+ V+ Y T +  L     VD A++ L  M      P +  +S 
Sbjct: 112 QAVGLLRSM-QDCGVRPD-VVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVYSC 169

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
            L    K        ++++ M G G    P+++MY A+I  LC +  V    R  D M  
Sbjct: 170 LLHGYCKTGRWESVGKVFEEMSGRGIE--PDVVMYTALIDSLCRHGKVKKAARVMDMMTE 227

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 414
            G  P+ +TYN++   + K   V E       M +   QP  +   T IT L    E + 
Sbjct: 228 RGLEPNVVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEMDE 287

Query: 415 AIEIWNYIL--ENGILPLEASANELLVGLRNLG 445
           A+ +   ++  E  + P   + N ++ GL  +G
Sbjct: 288 AMALLEEMMQGETRVRPDLMTFNSVIHGLCKIG 320



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/279 (22%), Positives = 112/279 (40%), Gaps = 14/279 (5%)

Query: 130 EQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLL 189
           E M    RV  +     L TF S+    C  G   +A+    +M+ +G   ++VA N L+
Sbjct: 294 EMMQGETRVRPD-----LMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFNLLI 348

Query: 190 SAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER-F 247
             + R  ++  +A+E ++ +    + PD  +++IL+ G+ K   VE A     EM  +  
Sbjct: 349 GGLLRV-HKVKKAMELMDEMASSGLQPDSFTYSILINGFCKMRQVERAESYLSEMRHQGM 407

Query: 248 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 307
           E  P H   Y   L  +     + +A      M   NC      +S  +    K  +   
Sbjct: 408 EPEPVH---YIPLLKAMCDQGMMGQARDLFNEMD-RNCKLDAAAYSTMIHGAFKSGEKKI 463

Query: 308 AVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMI 367
           A +    M+  G  L+P+ + Y+  I +   + D+    R   QM   G  PD   ++ +
Sbjct: 464 AEEFLKDMIDEG--LIPDAVTYSIPINMFAKSGDLAAAERVLKQMTASGFVPDVAVFDSL 521

Query: 368 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406
            +         ++ +   EM   +    P   +T +T L
Sbjct: 522 IQGYGAKGDTEKILELTREMTAKDVALDPKIISTIVTSL 560


>gi|414586649|tpg|DAA37220.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
 gi|414586650|tpg|DAA37221.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
          Length = 969

 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 94/411 (22%), Positives = 170/411 (41%), Gaps = 30/411 (7%)

Query: 76  GIIPTPDLVHEVLQLSY----DSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRF-- 129
           G  P P L + ++  SY    D P +     R AG G       +N+ +  +        
Sbjct: 339 GCNPNPSLFNSLVH-SYCNARDYPYAYKLLNRMAGCGCPPGYVVYNIFIGSICSGEELPS 397

Query: 130 -EQMWNAVRVMKE----DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVA 184
            + +  A +V +E      VL+    A+     CG GK+D+A     +M   G   D   
Sbjct: 398 PDLLALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDKAFQIIKLMMRKGFVPDTST 457

Query: 185 VNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
            + +++ +C +  +  +A      +K + V PD  ++ IL++ + K G +E+A   F EM
Sbjct: 458 YSKVITFLC-EAMKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDEM 516

Query: 244 VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303
            E    +P  V+ Y   L   ++ KQV +A      M    C P    +S  +D L K  
Sbjct: 517 -ESVGCSPS-VVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCKAG 574

Query: 304 DSTHAVQLWDIMVGIGFN--------------LMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
           +S  A +++  M+G   N              + PN++ Y A+I  LC    V +     
Sbjct: 575 ESQKACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELL 634

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 409
           D M  +G  P+ + Y+ + +   K  ++   ++ F  M K  + PT     + I  +   
Sbjct: 635 DVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKD 694

Query: 410 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
              ++AI++ + +LE+   P   +   ++ GL  +G      +    M  R
Sbjct: 695 RRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKR 745



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 73/358 (20%), Positives = 153/358 (42%), Gaps = 19/358 (5%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           ++ ++  L +  + E+ +   + MK  GV+  + T+  + DS+C  G  ++A   FD M 
Sbjct: 458 YSKVITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDEME 517

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNV 233
             G    VV   +LL A  + + Q  +A +  +R V     P+  +++ L++G  K G  
Sbjct: 518 SVGCSPSVVTYTALLHAYLKTK-QVPQASDIFHRMVDAGCAPNTITYSALVDGLCKAGES 576

Query: 234 EEANKTFGEMV-------ERFEWNPEH-------VLAYETFLITLIRGKQVDEALKFLRV 279
           ++A + + +M+         F +  EH       V+ Y   +  L +  +V +A + L V
Sbjct: 577 QKACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDV 636

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
           M    C P    +   +D   K+    +A +++  M   G+  +P +  Y ++I  +  +
Sbjct: 637 MSSNGCEPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKCGY--LPTVHTYTSLIDAMFKD 694

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
             +D   +   QM+     P+ +TY  + + L +     +  K    M K    P  +  
Sbjct: 695 RRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTY 754

Query: 400 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
            + I  L  + + +++++++  ++  G  P   +   L+      G L +      EM
Sbjct: 755 TSLIDGLGKSGKVDMSLQLFTQMITQGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEM 812



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 74/344 (21%), Positives = 138/344 (40%), Gaps = 57/344 (16%)

Query: 66  DDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGK 125
           D++ES      ++    L+H  L+ +   P ++  F R    G   +   ++ +VD L K
Sbjct: 514 DEMESVGCSPSVVTYTALLHAYLK-TKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCK 572

Query: 126 NGRFEQMWN--AVRVMKEDGVLS---------------LPTFASIFDSYCGAGKYDEAVM 168
            G  ++     A  +   D V S               + T+ ++ D  C A K  +A  
Sbjct: 573 AGESQKACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQE 632

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
             DVMS +G E                                   P+   +  L++G+ 
Sbjct: 633 LLDVMSSNGCE-----------------------------------PNHIIYDALIDGFC 657

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           K G ++ A + F  M  +  + P  V  Y + +  + + +++D A+K L  M   +C P 
Sbjct: 658 KVGKLDNAQEVFFRM-SKCGYLPT-VHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPN 715

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
           +  ++  +D L ++ +   A++L  +M   G N  PN++ Y ++I  L  +  VD   + 
Sbjct: 716 VVTYTAMIDGLCRIGECQKALKLLSMMEKRGCN--PNVVTYTSLIDGLGKSGKVDMSLQL 773

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 392
           F QM+  G  P+ +TY ++         + E      EM +  W
Sbjct: 774 FTQMITQGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYW 817



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 72/369 (19%), Positives = 147/369 (39%), Gaps = 18/369 (4%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
           N++V    ++G + +    +  +K+ G   S  T+ ++      AG+ D        MS 
Sbjct: 176 NVIVRKCCRHGAWAKALEELGRLKDFGYRPSGATYNALVQVLATAGQMDMGFRVQKEMSE 235

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEE 235
            G   D   V     A+C+ E + S AL  + R  +    D      ++ G  +    +E
Sbjct: 236 LGFCTDKFTVGCFAQALCK-EGRWSDALVMIER--EDFKLDTVLCTQMISGLMEASLFDE 292

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
           A      M  R      +V+ Y T L   ++ KQ+    + + +M  E C P    F++ 
Sbjct: 293 AISFLHRM--RCNSCIPNVVTYRTLLAGFLKKKQLGWCKRIISMMMNEGCNPNPSLFNSL 350

Query: 296 LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN------VFRFF 349
           +       D  +A +L + M G G    P  ++YN  IG +C+ +++ +        + +
Sbjct: 351 VHSYCNARDYPYAYKLLNRMAGCGCP--PGYVVYNIFIGSICSGEELPSPDLLALAEKVY 408

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 409
           ++M+      + +       CL    +  +  +    M++  + P     +  IT L +A
Sbjct: 409 EEMLASSCVLNKVNTANFARCLCGMGKFDKAFQIIKLMMRKGFVPDTSTYSKVITFLCEA 468

Query: 410 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNRRILIY 465
            + E A  ++  +   G++P   +   L+     +G +   R + +EM     +  ++ Y
Sbjct: 469 MKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDEMESVGCSPSVVTY 528

Query: 466 EVTMHKLKK 474
              +H   K
Sbjct: 529 TALLHAYLK 537



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/299 (18%), Positives = 125/299 (41%), Gaps = 12/299 (4%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           FFR +  G   + + +  ++D + K+ R +     +  M E     ++ T+ ++ D  C 
Sbjct: 669 FFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCR 728

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
            G+  +A+    +M   G   +VV   SL+  + +          F   + +   P+  +
Sbjct: 729 IGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPNYVT 788

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG--KQVDEALKFL 277
           + +L+      G ++EA+    EM + + W P++V  Y     ++++G  K+   +L  L
Sbjct: 789 YRVLINHCCAAGLLDEAHSLLSEMKQTY-W-PKYVQGY----CSVVQGFSKKFIASLGLL 842

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL-MPNLIMYNAVIGLL 336
             ++          +   +D   K      A++L   M+ +  +L + +   Y ++I  L
Sbjct: 843 EELESHGMVSIAPVYGLLIDSFSKAGRLEKALELHKEMMEVSSSLNITSKDTYTSLIQAL 902

Query: 337 CNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN--EWQ 393
           C    ++  F  + ++   G  P+   +  + + LIK  + +E  +  + M      WQ
Sbjct: 903 CLASQLEKAFELYSEITRKGVVPELSAFICLIKGLIKVNKWNEALQLCYSMCDEGVNWQ 961



 Score = 43.1 bits (100), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 89/222 (40%), Gaps = 6/222 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG   +   +  ++D LGK+G+ +        M   G   +  T+  + +  C AG  DE
Sbjct: 745 RGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPNYVTYRVLINHCCAAGLLDE 804

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILL 224
           A      M      + V    S++    ++   +   LE L     + + P    + +L+
Sbjct: 805 AHSLLSEMKQTYWPKYVQGYCSVVQGFSKKFIASLGLLEELESHGMVSIAP---VYGLLI 861

Query: 225 EGWEKEGNVEEANKTFGEMVE-RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           + + K G +E+A +   EM+E     N      Y + +  L    Q+++A +    +  +
Sbjct: 862 DSFSKAGRLEKALELHKEMMEVSSSLNITSKDTYTSLIQALCLASQLEKAFELYSEITRK 921

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN 325
              P L  F   +  L+K+N    A+QL   M   G N   N
Sbjct: 922 GVVPELSAFICLIKGLIKVNKWNEALQLCYSMCDEGVNWQSN 963


>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Vitis vinifera]
          Length = 644

 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 96/419 (22%), Positives = 183/419 (43%), Gaps = 39/419 (9%)

Query: 98  AVDFFRWAGRGQ-RLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP----TF 150
           A++F+     G+  +SP   ++NL++  + K G  ++   A+ V +E  +        T+
Sbjct: 154 ALEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDR---AIEVFREMAIQKCEPDVFTY 210

Query: 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK 210
            ++ D  C   + DEAV+  D M + G     V  N L++ +C++ +          RV 
Sbjct: 211 CTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMV--------RVT 262

Query: 211 KIVD--------PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI 262
           K+VD        P+  ++  ++ G   +G +++A      MV   +  P  V  Y T + 
Sbjct: 263 KLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVAS-KCVPNDV-TYGTLIN 320

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL 322
            L++  +  + +  L  ++          +S  +  L K   S  A+ LW  MV  G   
Sbjct: 321 GLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKG--C 378

Query: 323 MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
            PN+++Y+A+I  LC    +D       +MV  G  P++ TY+ + +   K     +  +
Sbjct: 379 QPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIR 438

Query: 383 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 442
            + EM KN   P  +  +  I  L +  +   A+ +W ++L  G+ P   + + ++ GL 
Sbjct: 439 VWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLC 498

Query: 443 NLGRLSDVRRFAEEMLNRR------ILIYEVTMHKLKKAFYNESRSMRDIFDS-LERRC 494
           N G +    +   EML +       ++ Y + +  L K   N      D+ +S L+R C
Sbjct: 499 NAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQ--NSISHAIDLLNSMLDRGC 555



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 60/301 (19%), Positives = 133/301 (44%), Gaps = 7/301 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N +++ L   G+ ++  + + R++    V +  T+ ++ +     G+  + V     +
Sbjct: 279 TYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSL 338

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G   +  A ++L+S + ++E        +   V+K   P+   ++ L++G  +EG +
Sbjct: 339 EERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKL 398

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           +EA +   EMV +      +   Y + +    +     +A++  + M   NC P    +S
Sbjct: 399 DEAKEILCEMVNK--GCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYS 456

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +  L +      A+ +W  M+G G  L P+++ Y+++I  LCN   V+   + F++M+
Sbjct: 457 VLIHGLCEDGKLREAMMMWTHMLGRG--LRPDVVAYSSMIHGLCNAGSVEVGLKLFNEML 514

Query: 354 FH--GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
                + PD +TYN++   L K   +       + M+     P  + C   +  L +   
Sbjct: 515 CQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNALREKLN 574

Query: 412 P 412
           P
Sbjct: 575 P 575



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 117/282 (41%), Gaps = 8/282 (2%)

Query: 217 GDS-FAILLEGWEKEGNVEEANKTFGEMVE--RFEWNPEHVLAYETFLITLIRGKQVDEA 273
           GDS F  L+E +   G+     + F  M    R       +L +  +    +  K ++  
Sbjct: 63  GDSTFYSLIENYANSGDFGTLFQVFDRMKRERRVFIEKNFILVFRAYGKAHLPEKAIE-- 120

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
             F R++    C  T++ F++ L+++++      A++ ++  VG   N+ PN++ +N VI
Sbjct: 121 -LFGRMVDEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVI 179

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
             +C    VD     F +M      PD  TY  + + L K  R+ E      EM      
Sbjct: 180 KAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCF 239

Query: 394 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 453
           P+ +     I  L    +     ++ + +   G +P E + N ++ GL   G+L      
Sbjct: 240 PSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSL 299

Query: 454 AEEMLNRRILIYEVTMHKLKKAFYNESRSMRDI--FDSLERR 493
            + M+  + +  +VT   L      + RS+  +    SLE R
Sbjct: 300 LDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEER 341


>gi|125569053|gb|EAZ10568.1| hypothetical protein OsJ_00400 [Oryza sativa Japonica Group]
          Length = 514

 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 94/407 (23%), Positives = 181/407 (44%), Gaps = 29/407 (7%)

Query: 82  DLVHEVLQLSYDSPSSAVDFFRWAG------RGQRLSPYAWNLMVDVLGKNGR---FEQM 132
           D+V +VLQ    +   A+ FF+WA        G R    A+  M+D+LG+  +     Q+
Sbjct: 93  DVVLKVLQKQRSNWKVALSFFKWAAGLPQYNHGSR----AYTEMLDILGRMKKVRLMRQL 148

Query: 133 WNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI 192
           ++ + V     V++   FA + + Y GA K  EA+  F     +G E D+V    LL ++
Sbjct: 149 FDEIPVESRQSVVTNRMFAVLLNRYAGAHKVQEAIDMFYKRKDYGFELDLVGFQILLMSL 208

Query: 193 CRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
           CR ++       FL + K    P   S+ I+L GW  +G++ +A + + E++   +  P+
Sbjct: 209 CRYKHVEEAEALFLQK-KDEFPPVIKSWNIILNGWCVKGSLADAKRVWNEIIAS-KLKPD 266

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
            +  Y TF+ +L +  ++  A+K    M  +   P +   +  +D L        A++++
Sbjct: 267 -LFTYGTFINSLTKSGKLSTAVKLFTSMWEKGINPDVAICNCIIDQLCFKKRIPEALEIF 325

Query: 313 DIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 372
             M   G     ++  YN +I   C  + ++ V+   D M   G  P+++TY+ I +   
Sbjct: 326 GEMNDRG--CQADVATYNTLIKHFCKINRMEKVYELLDDMEVKGVSPNNMTYSYILKTTE 383

Query: 373 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 432
           K K   +V      M K+  +         + + +  D  +    +W+ +  NG  P + 
Sbjct: 384 KPK---DVISLMQRMEKSGCRLDSDTYNLILNLYVSWDYEKGVQLVWDEMERNGSGPDQR 440

Query: 433 SANELLVGLRNLGRLSDVRRFAEEMLNR--------RILIYEVTMHK 471
           S   ++ GL +  +L +   +   M +R        ++L+  + M K
Sbjct: 441 SFTIMVHGLHSHDKLDEALHYYRTMESRGMTPEPRTKLLVKAIRMKK 487


>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
           Japonica Group]
 gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
          Length = 648

 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 86/393 (21%), Positives = 173/393 (44%), Gaps = 42/393 (10%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G +     +N ++  L ++G +++ W   + M + GV   + +F  +   +C  G+ +E
Sbjct: 220 KGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEE 279

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILL 224
           A+  +  M   G++ D+V+ + L+    R+  +   A+ +L  ++   + PDG  + +++
Sbjct: 280 ALKIYKEMRHRGIKPDLVSFSCLIGLFARR-GKMDHAMAYLREMRCFGLVPDGVIYTMVI 338

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFL----------------------- 261
            G+ + G + +A +   EMV      P+ V+ Y T L                       
Sbjct: 339 GGFCRAGLMSDALRVRDEMVG-CGCLPD-VVTYNTLLNGLCKERRLLDAEGLLNEMRERG 396

Query: 262 --------ITLIRG----KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV 309
                    TLI G     ++D+AL+    M  +   P +  ++  +D + +  D   A 
Sbjct: 397 VPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKAN 456

Query: 310 QLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFE 369
            LWD M      + PN + Y+ +I   C    V++ F F D+M+  G  P+ +TYN I +
Sbjct: 457 DLWDDMHS--REIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIK 514

Query: 370 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
              ++  V + +KF  +M+ N+  P  +   T I   +  D+   A ++ N + +  + P
Sbjct: 515 GYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQP 574

Query: 430 LEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
              + N L+ G    G + +     E+M  + I
Sbjct: 575 DVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGI 607



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 159/377 (42%), Gaps = 43/377 (11%)

Query: 95  PSSAVDFFRWA-GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFAS 152
           P  A D +R        ++ Y  N+MV    K   F+++   +  M++  V   + T   
Sbjct: 137 PHLAADAYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNV 196

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI 212
           + D+   AG  + A+   D M   G++  +V  NS+L  +CR      +A E    +   
Sbjct: 197 MVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRS-GMWDKAWEVFKEMDDF 255

Query: 213 -VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD 271
            V PD  SF IL+ G+ + G +EEA K + EM  R    P+ ++++   +    R  ++D
Sbjct: 256 GVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHR-GIKPD-LVSFSCLIGLFARRGKMD 313

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA 331
            A+ +LR M+   CF                                   L+P+ ++Y  
Sbjct: 314 HAMAYLREMR---CF----------------------------------GLVPDGVIYTM 336

Query: 332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
           VIG  C    + +  R  D+MV  G  PD +TYN +   L K +R+ + E   +EM +  
Sbjct: 337 VIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERG 396

Query: 392 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 451
             P      T I       + + A+++++ +L   + P   + N L+ G+   G L    
Sbjct: 397 VPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKAN 456

Query: 452 RFAEEMLNRRILIYEVT 468
              ++M +R I    VT
Sbjct: 457 DLWDDMHSREIFPNHVT 473



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/364 (22%), Positives = 151/364 (41%), Gaps = 50/364 (13%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMK-----EDGVLSLPTFASIFDSYCGAG 161
           RG +    +++ ++ +  + G+ +     +R M+      DGV+    +  +   +C AG
Sbjct: 290 RGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVI----YTMVIGGFCRAG 345

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSF 220
              +A+   D M   G   DVV  N+LL+ +C+ E +   A   LN ++ + V PD  +F
Sbjct: 346 LMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCK-ERRLLDAEGLLNEMRERGVPPDLCTF 404

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
             L+ G+  EG +++A + F  M+ +    P+ ++ Y T +  + R   +D+A      M
Sbjct: 405 TTLIHGYCIEGKLDKALQLFDTMLNQ-RLRPD-IVTYNTLIDGMCRQGDLDKANDLWDDM 462

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
                FP    +S  +D   +      A    D M+  G  ++PN++ YN++I   C + 
Sbjct: 463 HSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKG--ILPNIMTYNSIIKGYCRSG 520

Query: 341 DVDNVFRFFDQMV-----------------------FHGAF------------PDSLTYN 365
           +V    +F  +M+                        H AF            PD +TYN
Sbjct: 521 NVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYN 580

Query: 366 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 425
           M+      +  V E    F +M     +P      + I   + A   + A ++ + +L+ 
Sbjct: 581 MLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQR 640

Query: 426 GILP 429
           G  P
Sbjct: 641 GFAP 644


>gi|357499049|ref|XP_003619813.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494828|gb|AES76031.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 614

 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 133/276 (48%), Gaps = 5/276 (1%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N++VD L K G  ++  N + VM + GV S + T+ S+ D Y    + ++A   F+ 
Sbjct: 275 YTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQENKATFVFNT 334

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M+  GV  DV + + +++ +C+ +        F     K + P+  ++  L++G  K G 
Sbjct: 335 MARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLLKYGR 394

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           + +A     EM  R +  P  V+ Y + L  L +  QVD+A+  +  +K +   P +  +
Sbjct: 395 ISDAWDLVNEMHNRGQ--PADVITYSSLLDALCKNHQVDKAITLITKIKDQGIQPNIYTY 452

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  +D L K      A  ++  ++  G++L  ++ MYN ++  LC     D       +M
Sbjct: 453 TILVDGLCKNGRLKDAQAVYQDLLIKGYHL--DVKMYNVMVNGLCKEGLFDEALSLVSKM 510

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
             +G  PD++TY  +   L +N +  +  K   EMI
Sbjct: 511 EDNGCIPDAVTYETLVRALFENDKNDKAVKLLREMI 546



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 87/378 (23%), Positives = 163/378 (43%), Gaps = 50/378 (13%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T  ++    C  GK  EA+   D +   G   D V+  +L++ +C+   +T  AL+ L +
Sbjct: 136 TITTLIKGLCLNGKVREALHFHDDVIAKGFHLDQVSYGTLINGLCK-TGETRAALQVLRK 194

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           +  + V P+   +  +++   K+  V  A+    EM+ +  + P+ V+ Y T +   +  
Sbjct: 195 IDGLLVQPNVVMYNTIIDSLCKDKLVIHASDLCSEMIVKRIF-PD-VVTYTTLIYGCLIV 252

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG-------- 319
            ++ EA+     M  +N  P +  F+  +D L K  +   A  +  +M+  G        
Sbjct: 253 GRLKEAVGLFNQMLLKNIKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTY 312

Query: 320 -------------------FNLM------PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
                              FN M      P++  Y+ +I  LC    VD     F +M  
Sbjct: 313 NSLMDGYFLVKQENKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHS 372

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA----D 410
               P+++TYN + + L+K  R+ +     +EM  N  QP  +      + LLDA     
Sbjct: 373 KSMAPNTVTYNSLIDGLLKYGRISDAWDLVNEM-HNRGQPADV---ITYSSLLDALCKNH 428

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR----ILIYE 466
           + + AI +   I + GI P   +   L+ GL   GRL D +   +++L +     + +Y 
Sbjct: 429 QVDKAITLITKIKDQGIQPNIYTYTILVDGLCKNGRLKDAQAVYQDLLIKGYHLDVKMYN 488

Query: 467 VTMHKL-KKAFYNESRSM 483
           V ++ L K+  ++E+ S+
Sbjct: 489 VMVNGLCKEGLFDEALSL 506



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 68/315 (21%), Positives = 129/315 (40%), Gaps = 6/315 (1%)

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206
           L TF  + + +C  G  + A      +   G   D V + +L+  +C    +   AL F 
Sbjct: 99  LFTFNILINCFCHLGHLNFAFSVLAKIFKLGFHPDTVTITTLIKGLCL-NGKVREALHFH 157

Query: 207 NRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
           + V  K    D  S+  L+ G  K G    A +   + ++     P +V+ Y T + +L 
Sbjct: 158 DDVIAKGFHLDQVSYGTLINGLCKTGETRAALQVLRK-IDGLLVQP-NVVMYNTIIDSLC 215

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN 325
           + K V  A      M  +  FP +  ++  +   + +     AV L++ M  +  N+ P+
Sbjct: 216 KDKLVIHASDLCSEMIVKRIFPDVVTYTTLIYGCLIVGRLKEAVGLFNQM--LLKNIKPD 273

Query: 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 385
           +  +N ++  LC   ++         M+  G   + +TYN + +     K+ ++    F+
Sbjct: 274 VYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQENKATFVFN 333

Query: 386 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
            M +    P   + +  I  L      + A+ ++  +    + P   + N L+ GL   G
Sbjct: 334 TMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLLKYG 393

Query: 446 RLSDVRRFAEEMLNR 460
           R+SD      EM NR
Sbjct: 394 RISDAWDLVNEMHNR 408



 Score = 40.8 bits (94), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 48/218 (22%), Positives = 93/218 (42%), Gaps = 15/218 (6%)

Query: 270 VDEALK-FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           VD+A+  F  ++   N    +  F+  L  LVKLN    A+     M      + P+L  
Sbjct: 44  VDDAVSSFNHILHMRNPVQPIFEFNKILSSLVKLNHFHTAISFSKQMELK--QIQPDLFT 101

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           +N +I   C+   ++  F    ++   G  PD++T   + + L  N +V E   F  ++I
Sbjct: 102 FNILINCFCHLGHLNFAFSVLAKIFKLGFHPDTVTITTLIKGLCLNGKVREALHFHDDVI 161

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIW----------NYILENGILPLEASANELL 438
              +    ++  T I  L    E   A+++           N ++ N I+      ++L+
Sbjct: 162 AKGFHLDQVSYGTLINGLCKTGETRAALQVLRKIDGLLVQPNVVMYNTIID-SLCKDKLV 220

Query: 439 VGLRNLGRLSDVRRFAEEMLNRRILIYE-VTMHKLKKA 475
           +   +L     V+R   +++    LIY  + + +LK+A
Sbjct: 221 IHASDLCSEMIVKRIFPDVVTYTTLIYGCLIVGRLKEA 258


>gi|242092708|ref|XP_002436844.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
 gi|241915067|gb|EER88211.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
          Length = 755

 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 93/397 (23%), Positives = 156/397 (39%), Gaps = 50/397 (12%)

Query: 127 GRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN 186
           G F+QM +  R +K D      T+  +   Y   GK+ E V   + MS HG+E D +   
Sbjct: 217 GVFQQMID--RGVKPDN----GTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDCITYA 270

Query: 187 SLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
            LL  +C+        L F +  +K + PD   +AILL G+  +G + E +     MV  
Sbjct: 271 LLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHSFLDLMVGN 330

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
              +P   + +        +   ++EA+     M+ +   P +  F   +D L KL    
Sbjct: 331 -GVSPNRRI-FNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVD 388

Query: 307 HAVQLWDIMVGIGFNLMPNL-----------------------------------IMYNA 331
            AV  ++ M+  G  + PN+                                   + +N 
Sbjct: 389 DAVLQFNQMINEG--VTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNT 446

Query: 332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
           ++  LCN   V    R  D M+  G  P+ ++YN +        R+ E  K    M+ N 
Sbjct: 447 LMCNLCNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNG 506

Query: 392 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 451
            +P        +     A   + A  ++  +L  G+ P+ A+ N +L GL   GR S+  
Sbjct: 507 LKPNEFTYTILLRGYCKARRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEAN 566

Query: 452 RFAEEMLNRR----ILIYEVTMHKL-KKAFYNESRSM 483
                M+N R    I  Y + ++ L K  F +E+  M
Sbjct: 567 ELYLNMINSRTKCDIYTYNIILNGLCKNNFVDEAFKM 603



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 134/320 (41%), Gaps = 15/320 (4%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T++ +   +C  G+ +    +F ++   G   +V+ ++ LL  +C  +         L R
Sbjct: 92  TYSILIGCFCRMGRLEHGFAAFGLILKTGWRVNVIVISQLLKGLCDAKRVDEATDILLLR 151

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           + +    PD  ++  ++ G+ +EG VE+A   F EM++  +  P +V+ Y T +  L + 
Sbjct: 152 MSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMMD--QGIPPNVVTYTTVIDGLCKA 209

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
           + VD A    + M      P    ++  +   +        VQ+ + M   G  L P+ I
Sbjct: 210 QVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHG--LEPDCI 267

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            Y  ++  LC N        FFD M   G  PD   Y ++         + E+  F   M
Sbjct: 268 TYALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHSFLDLM 327

Query: 388 IKNEWQPTP-----LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 442
           + N   P       + CA A   ++     E A+ I+N + + G+ P   S   L+  L 
Sbjct: 328 VGNGVSPNRRIFNIMFCAYAKKAMI-----EEAMHIFNKMRQQGLSPDVVSFGALIDALC 382

Query: 443 NLGRLSDVRRFAEEMLNRRI 462
            LGR+ D      +M+N  +
Sbjct: 383 KLGRVDDAVLQFNQMINEGV 402



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 134/318 (42%), Gaps = 17/318 (5%)

Query: 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ--ENQTSRALEFLNRVKK----I 212
           G+   DEA+  FD +        V A N LL+ + R    + + R +    R+ +     
Sbjct: 26  GSLGLDEALKLFDELLHCARPASVRAFNQLLTVVSRAGCSSASERVVSLFTRMARECSSK 85

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
           V P+  +++IL+  + + G +E     FG ++ +  W   +V+     L  L   K+VDE
Sbjct: 86  VAPNACTYSILIGCFCRMGRLEHGFAAFG-LILKTGWRV-NVIVISQLLKGLCDAKRVDE 143

Query: 273 ALKFLRVMKGE-NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA 331
           A   L +   E  C P +  ++  ++   +      A  L+  M+  G  + PN++ Y  
Sbjct: 144 ATDILLLRMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQG--IPPNVVTYTT 201

Query: 332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
           VI  LC    VD     F QM+  G  PD+ TYN +    +   +  EV +   EM  + 
Sbjct: 202 VIDGLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHG 261

Query: 392 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 451
            +P  +  A  +  L        A   ++ +   GI P  A    LL G    G LS++ 
Sbjct: 262 LEPDCITYALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMH 321

Query: 452 RFAEEML------NRRIL 463
            F + M+      NRRI 
Sbjct: 322 SFLDLMVGNGVSPNRRIF 339



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 93/380 (24%), Positives = 157/380 (41%), Gaps = 49/380 (12%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           R Q LSP   ++  ++D L K GR +        M  +GV  ++  F+S+    C  GK+
Sbjct: 363 RQQGLSPDVVSFGALIDALCKLGRVDDAVLQFNQMINEGVTPNIFVFSSLVYGLCTVGKW 422

Query: 164 DEAV-MSFDVMSMHGVEQDVVAVNSLLSAICRQEN--QTSRALEFLNRVKKIVDPDGDSF 220
           ++A  + F+V+   G+  D V  N+L+  +C +    +  R ++ + RV   V P+  S+
Sbjct: 423 EKAEELFFEVLD-QGICVDAVFFNTLMCNLCNEGRVMEAQRLIDLMIRVG--VRPNVISY 479

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
             L+ G    G ++EA K    MV      P     Y   L    + ++VD+A    R M
Sbjct: 480 NTLVAGHCLTGRIDEAAKLLDVMVSN-GLKPNE-FTYTILLRGYCKARRVDDAYSLFREM 537

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
             +   P +  ++  L  L +    + A +L+  M  I      ++  YN ++  LC N+
Sbjct: 538 LMKGVTPVVATYNTILHGLFQTGRFSEANELYLNM--INSRTKCDIYTYNIILNGLCKNN 595

Query: 341 DVDNVFRFF----------DQMVF-------------------------HGAFPDSLTYN 365
            VD  F+ F          D + F                         +G  PD +TY 
Sbjct: 596 FVDEAFKMFRRLCSKDPQLDSVTFNIMIGALLKGGRKEDAMDLFATISAYGLVPDVVTYR 655

Query: 366 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 425
           +I E LI+   + E +  F  M K+   P        +  LL   +   A  ++ Y L+ 
Sbjct: 656 LIAENLIEEGSLGEFDGLFSAMEKSGTAPNSHMLNALVRRLLHRGDISRA-GVYLYKLDE 714

Query: 426 GILPLEASANELLVGLRNLG 445
               LEAS   +L+ L + G
Sbjct: 715 KNFSLEASTTSMLISLYSRG 734



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 64/310 (20%), Positives = 128/310 (41%), Gaps = 4/310 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
            + ++ + +   G+ ++A   F  M   G+  +VV   +++  +C+ +        F   
Sbjct: 163 AYNTVINGFFREGQVEKAYNLFLEMMDQGIPPNVVTYTTVIDGLCKAQVVDRAKGVFQQM 222

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           + + V PD  ++  L+ G+   G  +E  +   EM       P+  + Y   L  L +  
Sbjct: 223 IDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEM-STHGLEPD-CITYALLLDYLCKNG 280

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           +  EA  F   M  +   P +  ++  L         +      D+MVG G +  PN  +
Sbjct: 281 RCREARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHSFLDLMVGNGVS--PNRRI 338

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           +N +         ++     F++M   G  PD +++  + + L K  RV +    F++MI
Sbjct: 339 FNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVDDAVLQFNQMI 398

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
                P     ++ +  L    + E A E++  +L+ GI       N L+  L N GR+ 
Sbjct: 399 NEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNTLMCNLCNEGRVM 458

Query: 449 DVRRFAEEML 458
           + +R  + M+
Sbjct: 459 EAQRLIDLMI 468


>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
          Length = 592

 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/377 (21%), Positives = 164/377 (43%), Gaps = 11/377 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            + ++++     G   +    +  M   G+L  + T+ +I    C  G  + A      +
Sbjct: 219 TYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSL 278

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
           +  G E DV++ N LL A   Q               +  +P+  +++IL+    + G +
Sbjct: 279 TSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRI 338

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           +EA      M+E+ E  P+   +Y+  +  L +  ++D A+  +  M    C P +  ++
Sbjct: 339 DEAISVLKVMIEK-ELTPD-TYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYN 396

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             L  L K  ++  A+++++ + G+G    PN+  YN +I  L +  D          M+
Sbjct: 397 TILAALCKNGNANQALEIFNKLRGMG--CPPNVSSYNTMISALWSCGDRSRALGMVPAMI 454

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G  PD +TYN +  CL ++  V E      +M ++ ++PT ++    +  L      +
Sbjct: 455 SKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRID 514

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 473
            AI ++  ++E G  P E +   L+ G+   G  ++    A  + +R + I + +  +L 
Sbjct: 515 DAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAMELANSLFSRDV-ISQDSFKRLN 573

Query: 474 KAFYNESRSMRDIFDSL 490
           K F      M D++  L
Sbjct: 574 KTF-----PMLDVYKEL 585



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 134/297 (45%), Gaps = 9/297 (3%)

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN--QTSRALEFLNRVK 210
           + +  C AGK++E++   + +   G   DV+    L+      +N  + SR +E L   +
Sbjct: 84  LLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEIL---E 140

Query: 211 KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270
              +PD  ++  ++ G+ K   +E A +    M  R  + P+ ++ Y   + +L   +++
Sbjct: 141 SHTEPDVFAYNAVISGFCKVNQIEAATQVLNRMKAR-GFLPD-IVTYNIMIGSLCNRRKL 198

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYN 330
             AL  L  +  +NC PT+  ++  ++  +       A++L + M+  G  L+P++  YN
Sbjct: 199 GLALTVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARG--LLPDMYTYN 256

Query: 331 AVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 390
           A+I  +C    V+        +   G  PD ++YN++    +   +  E EK   EM   
Sbjct: 257 AIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSR 316

Query: 391 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
             +P  +  +  I+ L      + AI +   ++E  + P   S + L+  L   GRL
Sbjct: 317 GCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRL 373



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 78/368 (21%), Positives = 145/368 (39%), Gaps = 44/368 (11%)

Query: 129 FEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAV 185
           F+ +  A RVM+     + P    + ++   +C   + + A    + M   G   D+V  
Sbjct: 126 FKNIEKASRVMEILESHTEPDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTY 185

Query: 186 NSLLSAICRQENQTSRALEFLNRVKKIVD---PDGDSFAILLEGWEKEGNVEEANKTFGE 242
           N ++ ++C +  +   AL  L+++  ++D   P   ++ IL+E    EG + EA K   E
Sbjct: 186 NIMIGSLCNRR-KLGLALTVLDQL--LLDNCMPTVITYTILIEATIVEGGINEAMKLLEE 242

Query: 243 MVER------FEWNP---------------------------EHVLAYETFLITLIRGKQ 269
           M+ R      + +N                              V++Y   L   +   +
Sbjct: 243 MLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGK 302

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY 329
            DE  K +  M    C P    +S  +  L +      A+ +  +M  I   L P+   Y
Sbjct: 303 WDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVM--IEKELTPDTYSY 360

Query: 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389
           + +I  LC    +D      D M+ +G  PD + YN I   L KN   ++  + F+++  
Sbjct: 361 DPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRG 420

Query: 390 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 449
               P   +  T I+ L    +   A+ +   ++  GI P E + N L+  L   G + +
Sbjct: 421 MGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEE 480

Query: 450 VRRFAEEM 457
                ++M
Sbjct: 481 AIGLLDDM 488



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 94/225 (41%), Gaps = 12/225 (5%)

Query: 240 FGEMVERFEWNPEHVLAYETFLITLIRG----KQVDEALKFLRVMKGENCFPTLKFFSNA 295
           F E +    + P+ +L  +     LI+G    K +++A + + +++     P +  ++  
Sbjct: 100 FLECLVNKGYTPDVILCTK-----LIKGFFNFKNIEKASRVMEILESHT-EPDVFAYNAV 153

Query: 296 LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
           +    K+N    A Q+ + M   GF  +P+++ YN +IG LCN   +       DQ++  
Sbjct: 154 ISGFCKVNQIEAATQVLNRMKARGF--LPDIVTYNIMIGSLCNRRKLGLALTVLDQLLLD 211

Query: 356 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 415
              P  +TY ++ E  I    ++E  K   EM+     P        I  +      E A
Sbjct: 212 NCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERA 271

Query: 416 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
            E+   +   G  P   S N LL    N G+  +  +   EM +R
Sbjct: 272 AELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSR 316



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/241 (18%), Positives = 103/241 (42%), Gaps = 10/241 (4%)

Query: 248 EWNPEHVLAY---ETFLITLI----RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV 300
           E  P H+ +Y   ET L+ L+    +  + +E+L FL  +  +   P +   +  +    
Sbjct: 65  EARPAHLQSYDFRETHLMKLLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFF 124

Query: 301 KLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPD 360
              +   A ++ +I+     +  P++  YNAVI   C  + ++   +  ++M   G  PD
Sbjct: 125 NFKNIEKASRVMEILES---HTEPDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPD 181

Query: 361 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 420
            +TYN++   L   +++        +++ +   PT +     I   +       A+++  
Sbjct: 182 IVTYNIMIGSLCNRRKLGLALTVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLE 241

Query: 421 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 480
            +L  G+LP   + N ++ G+   G +         + ++      ++ + L +AF N+ 
Sbjct: 242 EMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQG 301

Query: 481 R 481
           +
Sbjct: 302 K 302


>gi|242062032|ref|XP_002452305.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
 gi|241932136|gb|EES05281.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
          Length = 347

 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 139/305 (45%), Gaps = 41/305 (13%)

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGD 218
           A ++++A    + M+  G   +VV  N L+S +CR+      A+E L ++ K    P+  
Sbjct: 64  AERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRR-GLVEPAMEVLEQIPKYGCTPNSL 122

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           S+  LL  + K+  +++A      MV R  + P+ +++Y T L  L R  +VD A+  L 
Sbjct: 123 SYNPLLHAFCKQKKMDKAMAFVELMVSRGCY-PD-IVSYNTLLTALCRNGEVDVAIDLLH 180

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            +KG+ C P L  ++  +D L K   +  A++L D M+  G  L P++I Y  +   LC 
Sbjct: 181 QLKGKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMISKG--LQPDIITYTTIASGLCR 238

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
            D ++   R F ++   G  P  + YN I   L K +  H                    
Sbjct: 239 EDKIEEAIRTFCKVQDMGIRPTVVLYNAILLGLCKRRETHN------------------- 279

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
                           AI++++Y++ NG +P E++   L+ GL   G + + R    ++ 
Sbjct: 280 ----------------AIDLFSYMISNGCMPNESTYTILVEGLAYEGLVKEARDLLGQLC 323

Query: 459 NRRIL 463
           +R ++
Sbjct: 324 SRGVV 328



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 121/273 (44%), Gaps = 6/273 (2%)

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV-DPDGDSFAILLEGWE 228
            D M   G   D++  N +L+ IC QE +   A+EFL  +     +P+  S+ I+L+G  
Sbjct: 4   LDEMRDKGCAPDIITYNVVLNGIC-QEGRVDDAMEFLENLPSYGGEPNTVSYNIVLKGLF 62

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
                E+A K   EM  +    P +V+ +   +  L R   V+ A++ L  +    C P 
Sbjct: 63  TAERWEDAEKLMEEMAHK--GCPPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGCTPN 120

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
              ++  L    K      A+   ++MV  G    P+++ YN ++  LC N +VD     
Sbjct: 121 SLSYNPLLHAFCKQKKMDKAMAFVELMVSRG--CYPDIVSYNTLLTALCRNGEVDVAIDL 178

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
             Q+   G  P  ++YN + + L K  +  E  +   EMI    QP  +   T  + L  
Sbjct: 179 LHQLKGKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMISKGLQPDIITYTTIASGLCR 238

Query: 409 ADEPEIAIEIWNYILENGILPLEASANELLVGL 441
            D+ E AI  +  + + GI P     N +L+GL
Sbjct: 239 EDKIEEAIRTFCKVQDMGIRPTVVLYNAILLGL 271



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/246 (21%), Positives = 107/246 (43%), Gaps = 6/246 (2%)

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
           ++ Y   L  + +  +VD+A++FL  +      P    ++  L  L        A +L +
Sbjct: 16  IITYNVVLNGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIVLKGLFTAERWEDAEKLME 75

Query: 314 IMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 373
            M   G    PN++ +N +I  LC    V+      +Q+  +G  P+SL+YN +     K
Sbjct: 76  EMAHKGCP--PNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGCTPNSLSYNPLLHAFCK 133

Query: 374 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 433
            K++ +   F   M+     P  ++  T +T L    E ++AI++ + +   G  P+  S
Sbjct: 134 QKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIDLLHQLKGKGCSPVLIS 193

Query: 434 ANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERR 493
            N ++ GL   G+  +     +EM+++ +    +T   +      E +    I +++   
Sbjct: 194 YNTVIDGLTKAGKTKEALELLDEMISKGLQPDIITYTTIASGLCREDK----IEEAIRTF 249

Query: 494 CKTSQM 499
           CK   M
Sbjct: 250 CKVQDM 255



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 62/137 (45%)

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           P++I YN V+  +C    VD+   F + +  +G  P++++YN++ + L   +R  + EK 
Sbjct: 14  PDIITYNVVLNGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIVLKGLFTAERWEDAEKL 73

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
             EM      P  +     I+ L      E A+E+   I + G  P   S N LL     
Sbjct: 74  MEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGCTPNSLSYNPLLHAFCK 133

Query: 444 LGRLSDVRRFAEEMLNR 460
             ++     F E M++R
Sbjct: 134 QKKMDKAMAFVELMVSR 150



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 38/177 (21%), Positives = 73/177 (41%), Gaps = 38/177 (21%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDE 165
           RG      ++N ++  L +NG  +   + +  +K  G    L ++ ++ D    AGK  E
Sbjct: 150 RGCYPDIVSYNTLLTALCRNGEVDVAIDLLHQLKGKGCSPVLISYNTVIDGLTKAGKTKE 209

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI------------- 212
           A+   D M   G++ D++   ++ S +CR E++   A+    +V+ +             
Sbjct: 210 ALELLDEMISKGLQPDIITYTTIASGLCR-EDKIEEAIRTFCKVQDMGIRPTVVLYNAIL 268

Query: 213 ------------VD-----------PDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
                       +D           P+  ++ IL+EG   EG V+EA    G++  R
Sbjct: 269 LGLCKRRETHNAIDLFSYMISNGCMPNESTYTILVEGLAYEGLVKEARDLLGQLCSR 325


>gi|15235288|ref|NP_193742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098720|sp|O49436.1|PP327_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g20090; AltName: Full=Protein EMBRYO DEFECTIVE 1025
 gi|2827663|emb|CAA16617.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|7268804|emb|CAB79009.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|58013024|gb|AAW62965.1| embryo-defective 1025 [Arabidopsis thaliana]
 gi|332658871|gb|AEE84271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 100/400 (25%), Positives = 176/400 (44%), Gaps = 13/400 (3%)

Query: 86  EVLQLSYDSPSSAVDFFRWAGRGQ-RLSPYAWNLMVDVLGKNGRFEQMWNAV-RVMKEDG 143
           EV++   ++P S   F      G  +L     + M++    +G F+ +   + R+  E+ 
Sbjct: 49  EVVENPLEAPISEKMFKSAPKMGSFKLGDSTLSSMIESYANSGDFDSVEKLLSRIRLENR 108

Query: 144 VLSLPTFASIFDSYCGAGKYDEAVMSFDVM-SMHGVEQDVVAVNSLLSAICRQENQTSRA 202
           V+   +F  +F +Y  A   D+AV  F  M      ++ V + NS+L+ I   E    R 
Sbjct: 109 VIIERSFIVVFRAYGKAHLPDKAVDLFHRMVDEFRCKRSVKSFNSVLNVII-NEGLYHRG 167

Query: 203 LEFLNRVKKI-----VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
           LEF + V        + P+G SF ++++   K   V+ A + F  M ER +  P+    Y
Sbjct: 168 LEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPER-KCLPDG-YTY 225

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317
            T +  L + +++DEA+  L  M+ E C P+   ++  +D L K  D T   +L D M  
Sbjct: 226 CTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFL 285

Query: 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
            G   +PN + YN +I  LC    +D      ++MV     P+ +TY  +   L+K +R 
Sbjct: 286 KG--CVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRA 343

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 437
            +  +    M +  +       +  I+ L    + E A+ +W  + E G  P     + L
Sbjct: 344 TDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVL 403

Query: 438 LVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFY 477
           + GL   G+ ++ +     M+    L    T   L K F+
Sbjct: 404 VDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFF 443



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 149/353 (42%), Gaps = 21/353 (5%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++NL++  L K    ++     R M E   L    T+ ++ D  C   + DEAV+  D M
Sbjct: 189 SFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEM 248

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD--------PDGDSFAILLE 225
              G     V  N L+  +C++ +        L RV K+VD        P+  ++  L+ 
Sbjct: 249 QSEGCSPSPVIYNVLIDGLCKKGD--------LTRVTKLVDNMFLKGCVPNEVTYNTLIH 300

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G   +G +++A      MV   +  P  V  Y T +  L++ ++  +A++ L  M+    
Sbjct: 301 GLCLKGKLDKAVSLLERMVSS-KCIPNDV-TYGTLINGLVKQRRATDAVRLLSSMEERGY 358

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
                 +S  +  L K   +  A+ LW  M   G    PN+++Y+ ++  LC     +  
Sbjct: 359 HLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCK--PNIVVYSVLVDGLCREGKPNEA 416

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
               ++M+  G  P++ TY+ + +   K     E  + + EM K          +  I  
Sbjct: 417 KEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDG 476

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
           L      + A+ +W+ +L  GI P   + + ++ GL  +G +    +   EML
Sbjct: 477 LCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEML 529



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 151/359 (42%), Gaps = 11/359 (3%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G   SP  +N+++D L K G   ++   V  M   G + +  T+ ++    C  GK D+A
Sbjct: 252 GCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKA 311

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
           V   + M       + V   +L++ + +Q   T       +  ++    +   +++L+ G
Sbjct: 312 VSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISG 371

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
             KEG  EEA   + +M E+      +++ Y   +  L R  + +EA + L  M    C 
Sbjct: 372 LFKEGKAEEAMSLWRKMAEK--GCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCL 429

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346
           P    +S+ +    K      AVQ+W  M   G +   N   Y+ +I  LC    V    
Sbjct: 430 PNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCS--RNKFCYSVLIDGLCGVGRVKEAM 487

Query: 347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406
             + +M+  G  PD++ Y+ I + L     +    K +HEM+  E +P          +L
Sbjct: 488 MVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQE-EPKSQPDVVTYNIL 546

Query: 407 LDA----DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV-RRFAEEMLNR 460
           LD      +   A+++ N +L+ G  P   + N  L  L       D  R F EE++ R
Sbjct: 547 LDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTLSEKSNSCDKGRSFLEELVVR 605



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 119/286 (41%), Gaps = 14/286 (4%)

Query: 217 GDS-FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL-IRGKQ--VDE 272
           GDS  + ++E +   G+ +   K    +  R E     V+   +F++     GK    D+
Sbjct: 76  GDSTLSSMIESYANSGDFDSVEKLLSRI--RLE---NRVIIERSFIVVFRAYGKAHLPDK 130

Query: 273 ALKFLRVMKGE-NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG--IGFNLMPNLIMY 329
           A+     M  E  C  ++K F++ L++++        ++ +D +V   +  N+ PN + +
Sbjct: 131 AVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSF 190

Query: 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389
           N VI  LC    VD     F  M      PD  TY  + + L K +R+ E      EM  
Sbjct: 191 NLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQS 250

Query: 390 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 449
               P+P+     I  L    +     ++ + +   G +P E + N L+ GL   G+L  
Sbjct: 251 EGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDK 310

Query: 450 VRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDI--FDSLERR 493
                E M++ + +  +VT   L      + R+   +    S+E R
Sbjct: 311 AVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEER 356


>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
 gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
          Length = 762

 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 107/425 (25%), Positives = 181/425 (42%), Gaps = 23/425 (5%)

Query: 76  GIIPTPDLVHEVL-QLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWN 134
           GI P+P+  + VL +L  D    A++ F+        S   +N+++ VL   GR E    
Sbjct: 230 GISPSPEACNAVLSRLPLDE---AIELFQGLPDKNVCS---YNILLKVLCGAGRVEDARQ 283

Query: 135 AVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
                  D + S P   T+  +   YC  G+ + AV   D M   GVE +     S+++ 
Sbjct: 284 LF-----DEMASPPDVVTYGILIHGYCALGELENAVKLLDDMVARGVEPNATVYTSVVAL 338

Query: 192 ICRQENQTSRALEFL-NRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
           +C  + + S AL  + + V   V  D   +  +L G+  +G++  A + F EM +R    
Sbjct: 339 LC-DKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFCNKGDLVSARRWFDEM-QRKGLA 396

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
            + V  Y T +  L R  ++ EA K L+ M           ++  +D   K      A Q
Sbjct: 397 TDGV-TYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQ 455

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
           + + MV  G  + PN++ Y A+   LC   DV        +M   G   ++ TYN +   
Sbjct: 456 VHNTMVQRG--VAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLING 513

Query: 371 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 430
           L K   + +  +   +M     +P      T I  L  + E + A ++   +L+NGI P 
Sbjct: 514 LCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPT 573

Query: 431 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFY--NESRSMRDIFD 488
             + N L+ G    GR+   ++  E ML + I     T + L K +   N  +S  +I+ 
Sbjct: 574 IVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYK 633

Query: 489 SLERR 493
            +  R
Sbjct: 634 GMCSR 638



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/356 (20%), Positives = 140/356 (39%), Gaps = 5/356 (1%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYD 164
            RG   +   +  +V +L   GR       V  M    V L    + ++   +C  G   
Sbjct: 322 ARGVEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFCNKGDLV 381

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
            A   FD M   G+  D V   +L++ +CR              + + +D D  ++ +L+
Sbjct: 382 SARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLV 441

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           +G+ K G + EA +    MV+R      +V+ Y      L +   V  A + L  M  + 
Sbjct: 442 DGYCKRGKMAEAFQVHNTMVQR--GVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKG 499

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
                  +++ ++ L K      A++    M   G  L P++  Y  +I  LC + ++D 
Sbjct: 500 LELNACTYNSLINGLCKAGYLDQAMRTMADMDAAG--LKPDVYTYTTLIDALCKSGELDR 557

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
                 +M+ +G  P  +TYN++      + RV   +K    M++    P      + + 
Sbjct: 558 AHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMK 617

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
                +  +   EI+  +    + P E + N L+ G      + + + F  EM+ +
Sbjct: 618 QYCIGNNMKSTTEIYKGMCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEK 673



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 118/259 (45%), Gaps = 6/259 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+  + D YC  GK  EA    + M   GV  +VV   +L   +C+Q      A E L+ 
Sbjct: 436 TYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQ-GDVQAANELLHE 494

Query: 209 VK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           +  K ++ +  ++  L+ G  K G +++A +T  +M +     P+ V  Y T +  L + 
Sbjct: 495 MSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADM-DAAGLKPD-VYTYTTLIDALCKS 552

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
            ++D A   L+ M      PT+  ++  ++            +L + M  +  N+ PN  
Sbjct: 553 GELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWM--LEKNIHPNAT 610

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            YN+++   C  +++ +    +  M      P+  TYN++ +   K + + E + F +EM
Sbjct: 611 TYNSLMKQYCIGNNMKSTTEIYKGMCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEM 670

Query: 388 IKNEWQPTPLNCATAITML 406
           I+  ++ T  + +  I +L
Sbjct: 671 IEKGFRLTASSYSALIRLL 689



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/327 (20%), Positives = 138/327 (42%), Gaps = 9/327 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           + ++VD   K G+  + +     M + GV  ++ T+ ++ D  C  G    A      MS
Sbjct: 437 YTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMS 496

Query: 175 MHGVEQDVVAVNSLLSAICRQE--NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
             G+E +    NSL++ +C+    +Q  R +  ++     + PD  ++  L++   K G 
Sbjct: 497 NKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAG--LKPDVYTYTTLIDALCKSGE 554

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           ++ A+    EM++     P  ++ Y   +       +V+   K L  M  +N  P    +
Sbjct: 555 LDRAHDLLQEMLDN-GIKPT-IVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTY 612

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           ++ +      N+     +++  M     N+ PN   YN +I   C    +     F ++M
Sbjct: 613 NSLMKQYCIGNNMKSTTEIYKGMCS--RNVEPNENTYNILIKGHCKARSMKEAQYFHNEM 670

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
           +  G    + +Y+ +   L K K+  E  K FH+M K  +   P      I    + D  
Sbjct: 671 IEKGFRLTASSYSALIRLLNKKKKFVEARKLFHDMRKEGFTAEPDVYNFYIDFNFNEDNL 730

Query: 413 EIAIEIWNYILENGILPLEASANELLV 439
           E  + + + ++E  I+  +A  ++ +V
Sbjct: 731 EATLALCDELVEASIVKSKAEMDQDVV 757


>gi|15239161|ref|NP_201383.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170571|sp|Q9FH87.1|PP447_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g65820
 gi|9758569|dbj|BAB09050.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010728|gb|AED98111.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 95/419 (22%), Positives = 173/419 (41%), Gaps = 11/419 (2%)

Query: 46  APYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA 105
           A  +  S RI+ +   H+    +E AL  +G+   P L+  VL    D+ +    FF WA
Sbjct: 80  ASDVEKSYRILRKF--HSRVPKLELALNESGVELRPGLIERVLNRCGDAGNLGYRFFVWA 137

Query: 106 GRGQRL--SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG--VLSLPTFASIFDSYCGAG 161
            +  R   S   +  MV +L K  +F  +W  +  M+++   ++    F  +   +  A 
Sbjct: 138 AKQPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFASAD 197

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221
              +A+   D M   G E D      LL A+C+       A +    ++     +   F 
Sbjct: 198 MVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKH-GSVKDAAKLFEDMRMRFPVNLRYFT 256

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            LL GW + G + EA     +M E   + P+ ++ Y   L       ++ +A   LR M+
Sbjct: 257 SLLYGWCRVGKMMEAKYVLVQMNEA-GFEPD-IVDYTNLLSGYANAGKMADAYDLLRDMR 314

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
                P    ++  +  L K++    A++++  M    +    +++ Y A++   C    
Sbjct: 315 RRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMER--YECEADVVTYTALVSGFCKWGK 372

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
           +D  +   D M+  G  P  LTY  I     K +   E  +   +M + E+ P       
Sbjct: 373 IDKCYIVLDDMIKKGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNV 432

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
            I +     E + A+ +WN + ENG+ P   +   ++ GL + G L +     +EM+ R
Sbjct: 433 VIRLACKLGEVKEAVRLWNEMEENGLSPGVDTFVIMINGLASQGCLLEASDHFKEMVTR 491


>gi|115453829|ref|NP_001050515.1| Os03g0569800 [Oryza sativa Japonica Group]
 gi|113548986|dbj|BAF12429.1| Os03g0569800 [Oryza sativa Japonica Group]
          Length = 773

 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 96/423 (22%), Positives = 179/423 (42%), Gaps = 12/423 (2%)

Query: 76  GIIPTPDLVHEVLQLSYDSPS---SAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQM 132
           G  P P + H +L+ +  S     S         +G  L     NL+++ + + G  ++ 
Sbjct: 141 GCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEA 200

Query: 133 WNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +R +   G  + + ++ ++    C A ++ +     D M       ++V  N+L+  
Sbjct: 201 VGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGY 260

Query: 192 ICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
           +CR      R  E L ++ +    PD   +A +++G  KEG++E AN+    M   +   
Sbjct: 261 LCRN-GLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRM-PSYGLK 318

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P +V+ Y T L  L   ++  EA + L  M  ++C      F+  +D   +       ++
Sbjct: 319 P-NVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIE 377

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
           L + M+  G   MP++I Y  VI   C    +D        M   G  P++++Y ++ + 
Sbjct: 378 LLEQMLSHG--CMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKG 435

Query: 371 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 430
           L    R  + E+   +MI+    P P+   T I  L      E AIE+   +L NG  P 
Sbjct: 436 LCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPD 495

Query: 431 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDI--FD 488
             S + ++ GL   G+  +       M+N+ I    +    +  A   E R  + I  FD
Sbjct: 496 LISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFD 555

Query: 489 SLE 491
           +++
Sbjct: 556 NIK 558



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 126/273 (46%), Gaps = 5/273 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N++VD   +NG  +++   +  M   G +  + T+ ++ + +C  G  DEAVM    MS
Sbjct: 359 FNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMS 418

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G + + V+   +L  +C               +++   P+  +F  L+    K+G VE
Sbjct: 419 SCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVE 478

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           +A +   +M+     +P+ +++Y T +  L +  + +EAL+ L VM  +   P    +S+
Sbjct: 479 QAIELLKQMLVN-GCSPD-LISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSS 536

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
               L +       +Q++D +      +  + ++YNAVI  LC   + D    FF  MV 
Sbjct: 537 IACALSREGRVNKVIQMFDNIKDT--TIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVS 594

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
           +G  P+  TY M+ + L       E ++   E+
Sbjct: 595 NGCMPNESTYTMLIKGLASEGLAKEAQELLSEL 627



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 81/370 (21%), Positives = 157/370 (42%), Gaps = 42/370 (11%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSYCGAG 161
           R    G + +   +N ++  L    R+++    +  M ++D  L   TF  + D +C  G
Sbjct: 311 RMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNG 370

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSF 220
             D  +   + M  HG   DV+   ++++  C+ E     A+  L  +      P+  S+
Sbjct: 371 LVDRVIELLEQMLSHGCMPDVITYTTVINGFCK-EGLIDEAVMLLKSMSSCGCKPNTVSY 429

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
            I+L+G    G   +A +   +M++  +  P + + + T +  L +   V++A++ L+ M
Sbjct: 430 TIVLKGLCSAGRWVDAEELMSQMIQ--QGCPPNPVTFNTLINFLCKKGLVEQAIELLKQM 487

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
               C P L  +S  +D L K   +  A++L ++MV  G +  PN I+Y+++   L    
Sbjct: 488 LVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGIS--PNTIIYSSIACALSREG 545

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
            V+ V + FD +       D++ YN +   L K                  W        
Sbjct: 546 RVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCK-----------------RW-------- 580

Query: 401 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
                     E + AI+ + Y++ NG +P E++   L+ GL + G   + +    E+ +R
Sbjct: 581 ----------ETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSR 630

Query: 461 RILIYEVTMH 470
             L   +  H
Sbjct: 631 GALRKHLMRH 640


>gi|225443946|ref|XP_002272135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 733

 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 91/406 (22%), Positives = 179/406 (44%), Gaps = 11/406 (2%)

Query: 81  PDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWNAVRV 138
           P  V  VLQL  D    A+ FF WA R  R    P  +  M+++L K    +     +R+
Sbjct: 101 PRQVCAVLQLQTDE-RVALRFFYWADRQWRYRHDPIVYYAMLEILSKTKLCQGAKRVLRL 159

Query: 139 MKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           M +  +   P  F  +  SY  AGK   A+    +M   G+E D+   N+ +  +    N
Sbjct: 160 MAKRRIERRPEAFGYVMVSYSRAGKLRNAMRVLTMMQKAGIEPDLSICNTAIHVLV-MGN 218

Query: 198 QTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
           +  +A+ FL R++ + ++P+  ++  L++G+     +E+A +   EM   F+      ++
Sbjct: 219 RLDKAVRFLERMQIVEIEPNVITYNCLIKGYCDLHRLEDAMELIAEMP--FKGCSPDKIS 276

Query: 257 YETFLITLIRGKQVDEA-LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
           Y T +  L + K++ E  L   +++K  N  P    ++  + +L K      A++     
Sbjct: 277 YYTVMGFLCKEKRIKEVRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREA 336

Query: 316 VGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 375
               F +  + + Y+A++   C    +D      ++M   G  PD +TY  +   L + +
Sbjct: 337 EERRFRV--DKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQER 394

Query: 376 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 435
           +V + +K   +M K+  +P  ++    +  L        A E+ N   E+  +P   + +
Sbjct: 395 KVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAITYS 454

Query: 436 ELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
            L+ G R  G+ S+      EM+ +      V ++ L ++   E +
Sbjct: 455 VLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEK 500



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 155/368 (42%), Gaps = 9/368 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N  V +L K+G  ++    +R  +E    +    +++I  S+C  G+ D+A    + M
Sbjct: 312 TYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEM 371

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGN 232
              G   DVV   S+++ +C QE +  +A + L ++ K    P+  S+  LL G  K GN
Sbjct: 372 FSKGCIPDVVTYTSVINGLC-QERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGN 430

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
             EA +    M E   W P + + Y   +    R  +  EA   +R M  +  FPT    
Sbjct: 431 SLEAREMMN-MSEEDWWIP-NAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEI 488

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  +  L +      A +  +  +  G  +  N++ +  VI   C  DD++      D M
Sbjct: 489 NLLIQSLCQEEKVDEAKRFMEQCLNNGCAV--NVVNFTTVIHGFCQKDDLEAALSLLDDM 546

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
                 PD +TY  I + L K  R+ E  K   +M++    PTP+   T I         
Sbjct: 547 YLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGLIPTPVTYRTVIHQYCRMGRV 606

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
           E  +++   +L         + N+++  L + G L    +   ++L     I   T H L
Sbjct: 607 EDLLKLLEKMLSRQ--ECRTAYNQVIEKLCSFGNLEQAYKLLGKVLRTASKIDANTCHML 664

Query: 473 KKAFYNES 480
            +++ ++ 
Sbjct: 665 IESYLSKG 672


>gi|125575277|gb|EAZ16561.1| hypothetical protein OsJ_32034 [Oryza sativa Japonica Group]
          Length = 526

 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 136/289 (47%), Gaps = 7/289 (2%)

Query: 109 QRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           QR+SP    +N ++  L K    ++    +  M + GV+    T+ SI   +C +G+  E
Sbjct: 110 QRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKE 169

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A++    M   GVE DVV  NSL+  +C+    T     F +  K+ + PD  ++  LL+
Sbjct: 170 AIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQ 229

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+  +G + E +     MV R   +P H + +   +    + ++V+EA+     M+ +  
Sbjct: 230 GYATKGALVEMHGLLDLMV-RNGIHPNHYV-FSILVCAYAKQEKVEEAMLVFSKMRQQGL 287

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P    +   +D+L K      A+  ++ M+  G  L P+ I+YN++I  LC  D  +  
Sbjct: 288 NPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEG--LRPDSIVYNSLIHSLCIFDKWEKA 345

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
              F +M+  G    ++ +N I +   K  RV E  K F  M++   +P
Sbjct: 346 EELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKP 394



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 69/319 (21%), Positives = 140/319 (43%), Gaps = 26/319 (8%)

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD----- 218
           ++A   FD +   G+  DV + N LL+ +C  EN++  ALE L+    + D  GD     
Sbjct: 34  EDARHVFDELLRRGI-PDVFSYNILLNGLC-DENRSQEALELLH---IMADDGGDCPPDV 88

Query: 219 -SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            S++ ++ G+ KEG++++       + +R   N   V+ Y + +  L + + VD+A++ L
Sbjct: 89  VSYSTVINGFFKEGDLDKM------LDQRISPN---VVTYNSIIAALCKAQTVDKAMEVL 139

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337
             M      P    +++ +           A+     M   G    P+++ YN+++  LC
Sbjct: 140 TTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVE--PDVVTYNSLMDYLC 197

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
            N       + FD M   G  PD  TY  + +       + E+      M++N   P   
Sbjct: 198 KNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHY 257

Query: 398 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
             +  +      ++ E A+ +++ + + G+ P   +   ++  L   GR+ D   + E+M
Sbjct: 258 VFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQM 317

Query: 458 LNRRI----LIYEVTMHKL 472
           ++  +    ++Y   +H L
Sbjct: 318 IDEGLRPDSIVYNSLIHSL 336



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/318 (22%), Positives = 142/318 (44%), Gaps = 16/318 (5%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSF 170
           +++N++++ L    R ++    + +M +DG    P   +++++ + +   G  D+     
Sbjct: 52  FSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDK----- 106

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEK 229
             M    +  +VV  NS+++A+C+ +    +A+E L   VK  V PD  ++  ++ G+  
Sbjct: 107 --MLDQRISPNVVTYNSIIAALCKAQT-VDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCS 163

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
            G  +EA     +M  R +     V+ Y + +  L +  +  EA K    M      P +
Sbjct: 164 SGQPKEAIVFLKKM--RSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDI 221

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
             +   L              L D+MV  G +  PN  +++ ++      + V+     F
Sbjct: 222 TTYGTLLQGYATKGALVEMHGLLDLMVRNGIH--PNHYVFSILVCAYAKQEKVEEAMLVF 279

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 409
            +M   G  P+++TY  + + L K+ RV +   +F +MI    +P  +   + I  L   
Sbjct: 280 SKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIF 339

Query: 410 DEPEIAIEIWNYILENGI 427
           D+ E A E++  +L+ GI
Sbjct: 340 DKWEKAEELFLEMLDRGI 357


>gi|7340725|emb|CAB82968.1| putative protein [Arabidopsis thaliana]
          Length = 308

 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 137/283 (48%), Gaps = 6/283 (2%)

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           P+  ++ +LL GW +  N+ EA + + +M++     P+ ++A+   L  L+R  +  +A+
Sbjct: 5   PNMMTYTVLLNGWCRVRNLIEAARIWNDMIDH-GLKPD-IVAHNVMLEGLLRSMKKSDAI 62

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
           K   VMK +   P ++ ++  +    K +    A++ +D MV  G  L P+  +Y  +I 
Sbjct: 63  KLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSG--LQPDAAVYTCLIT 120

Query: 335 LLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
                  +D V+    +M   G  PD  TYN + + +   K      + +++MI+NE +P
Sbjct: 121 GFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEP 180

Query: 395 TPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 454
           +       +     A   E+   +W+ +++ GI P + S   L+ GL + G+  +  R+ 
Sbjct: 181 SIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYL 240

Query: 455 EEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTS 497
           EEML++ +    +  +K    F+   +   +IF+ L +R K S
Sbjct: 241 EEMLDKGMKTPLIDYNKFAADFHRGGQP--EIFEELAQRAKFS 281



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 53/250 (21%), Positives = 118/250 (47%), Gaps = 7/250 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+  + + +C      EA   ++ M  HG++ D+VA N +L  + R   + S A++  + 
Sbjct: 9   TYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKK-SDAIKLFHV 67

Query: 209 VK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           +K K   P+  S+ I++  + K+ ++E A + F +MV+     P+  + Y   +      
Sbjct: 68  MKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDS-GLQPDAAV-YTCLITGFGTQ 125

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
           K++D   + L+ M+ +   P  K ++  + ++       H  ++++ M  I   + P++ 
Sbjct: 126 KKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKM--IQNEIEPSIH 183

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            +N ++       + +     +D+M+  G  PD  +Y ++   LI   +  E  ++  EM
Sbjct: 184 TFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEM 243

Query: 388 IKNEWQPTPL 397
           + ++   TPL
Sbjct: 244 L-DKGMKTPL 252


>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
 gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
          Length = 624

 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 130/323 (40%), Gaps = 43/323 (13%)

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           + K   PD  +FAILL G  +   +E+A +  G M E     P+  + Y   +    + K
Sbjct: 2   IDKSCQPDAFTFAILLRGLCRSNQLEKARQLLGRMKE-MGCVPDDAI-YNALISGYSKAK 59

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
              +A KFL  M   +C PT+  ++N +D L K   +  AV+L D M   G +  PN+  
Sbjct: 60  DFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCS--PNIYT 117

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF----- 383
           YN ++  LC    +D   +  ++M   G FPD +TYN   + L K  RV E  KF     
Sbjct: 118 YNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMP 177

Query: 384 ---------------------------FHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 416
                                        +M      P  +  ++ I       E E A+
Sbjct: 178 VTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAM 237

Query: 417 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR----ILIYEVTMHKL 472
            + + +L+ G  P   + N LL  L  LG +        EM  R     ++ Y   +  L
Sbjct: 238 GLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGL 297

Query: 473 KKAFYNESRSMRDIFDSL-ERRC 494
            KA     +  + +FD + ER C
Sbjct: 298 CKA--ERVKKAKAVFDRMVERGC 318



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 83/368 (22%), Positives = 167/368 (45%), Gaps = 14/368 (3%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + + +++  L ++ + E+    +  MKE G +     + ++   Y  A  + +A      
Sbjct: 11  FTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAE 70

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEG 231
           M  +     VV   +++  +C+   +T  A++ L+ ++ K   P+  ++ +++EG  +E 
Sbjct: 71  MVKNHCLPTVVTYTNIVDGLCKA-GRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEER 129

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            ++EA K   EM  R  + P+ V+ Y +F+  L +  +VDEA KFL  M      P +  
Sbjct: 130 KLDEAKKMLEEMAVR-GYFPD-VVTYNSFIKGLCKCDRVDEARKFLARMP---VTPDVVS 184

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           ++  ++ L K  D   A ++ D M   G    P+++ Y+++I   C   +V+      D 
Sbjct: 185 YTTVINGLCKSGDLDSASRMLDQMTNRGCT--PDVVTYSSLIDGFCKGGEVERAMGLLDS 242

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M+  G  P+ + YN +   L +   + + E    EM +  + P  ++    I  L  A+ 
Sbjct: 243 MLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAER 302

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR----ILIYEV 467
            + A  +++ ++E G  P  +S + L+  L     L D     E+   +     IL+Y V
Sbjct: 303 VKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDILLYTV 362

Query: 468 TMHKLKKA 475
            +  L K 
Sbjct: 363 LLDGLCKG 370



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 82/360 (22%), Positives = 148/360 (41%), Gaps = 52/360 (14%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++  +++ L K+G  +     +  M   G    + T++S+ D +C  G+ + A+   D M
Sbjct: 184 SYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSM 243

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGN 232
              G   ++VA NSLL A+ R      +A + L  + ++   PD  S+   ++G  K   
Sbjct: 244 LKLGCRPNMVAYNSLLGALHRL-GHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAER 302

Query: 233 VEEANKTFGEMVERF---------------------------------EWNPEHVLAYET 259
           V++A   F  MVER                                  ++    +L Y  
Sbjct: 303 VKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDILLYTV 362

Query: 260 FLITLIRGKQVDEALK-FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI 318
            L  L +G + DEA   F +V+  + C P + F++  LD   K      A+Q+   M+  
Sbjct: 363 LLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLER 422

Query: 319 GFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVH 378
                 N++ +N ++  LC +D + +       MV  G  PD +TY  + + + K  +  
Sbjct: 423 N---CCNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSA 479

Query: 379 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA--------IEIWNYIL----ENG 426
              + F E +K    P  +  +  IT L+  +  E A        + +WN ++    ENG
Sbjct: 480 AALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKLDVALWNAMILGYAENG 539



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 70/317 (22%), Positives = 129/317 (40%), Gaps = 34/317 (10%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED-GVLSLPTFASIFDSYCG 159
           F R   RG   +  +++++V+ L K    +     V   +E   ++ +  +  + D  C 
Sbjct: 310 FDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDILLYTVLLDGLCK 369

Query: 160 AGKYDEAVMSFD-VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD 218
            G++DEA   F  V+     E DV   N +L + C++  Q  +AL+   ++ +    +  
Sbjct: 370 GGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRR-QIDKALQIHKQMLERNCCNVV 428

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK-FL 277
           ++ IL+ G   +  + +A      MV+   + P+ V  Y T +  + +  +   AL+ F 
Sbjct: 429 TWNILVHGLCVDDRLSDAETMLLTMVDE-GFIPDFV-TYGTLVDAMCKCGKSAAALELFE 486

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHA--------VQLWDIMV---------GIGF 320
             +KG  C P +  +S  +  LV  N +  A        V LW+ M+          +G 
Sbjct: 487 EAVKG-GCVPDVVTYSALITGLVHENMAEEAYLLFTKLDVALWNAMILGYAENGSGDLGL 545

Query: 321 NLMPNLIMYNA----------VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
            L   LI  +           + G L   + +      FD+ V  G FPD    N + + 
Sbjct: 546 KLFVELIESDVEPNARTFGKEISGKLVKAESLGKARGLFDRAVKGGFFPDLFVANTLIDV 605

Query: 371 LIKNKRVHEVEKFFHEM 387
             K   + E  + F+ M
Sbjct: 606 FAKCGDLEEARRIFYSM 622


>gi|225430190|ref|XP_002282419.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial [Vitis vinifera]
 gi|296081989|emb|CBI20994.3| unnamed protein product [Vitis vinifera]
          Length = 597

 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 101/439 (23%), Positives = 190/439 (43%), Gaps = 25/439 (5%)

Query: 56  ICEIL---AHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQR 110
           IC +L   A +S   +E AL  TGI P   L+  +      SP      FRWA +  G  
Sbjct: 75  ICALLTDPALSSGAPLEDALNRTGIKPCSGLLQAIFSHFDASPKPLFTLFRWAMKQPGFE 134

Query: 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG----VLSLPTFASIFDSYCGAGKYDEA 166
            S   +N M+DVL K+  F+  W  V    E G    ++S  TFA +   Y  AG    A
Sbjct: 135 SSMTLFNSMIDVLAKSRAFDSAWLLVLDRIEGGEEPELVSSNTFAVLIRRYARAGMTLSA 194

Query: 167 VMSFDVM----SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD---PDGDS 219
           + +F+      S+   + +      LL ++C+ E     A E+ ++ + +     P    
Sbjct: 195 IRTFEFAFSLDSIRDRDSEWSLFKILLDSLCK-EGHVRVASEYFDQQRGLDPSWVPSIRV 253

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           + +LL GW +   ++ A + +  M +R    P  V+ Y T +    R ++ ++A++ +  
Sbjct: 254 YNVLLNGWFRSRKLKRAEQLWRTM-KRENVKPT-VVTYGTLVEGYCRMRRSEKAIELVGE 311

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD--IMVGIGFNLMPNLIMYNAVIGLLC 337
           M+G+   P +  ++  +D L +      A+ + +  ++   G    P +  YN+++   C
Sbjct: 312 MRGKGIEPNVIVYNPIIDSLAEAGRFKEAMGMMERCLVSETG----PTISTYNSLVKGFC 367

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
              D+    +    M+  G  P   TYN  F    +  +  E    + +MI++   P  L
Sbjct: 368 KAGDLVGASKVLKMMISRGFDPTLTTYNYFFRYFSRCGKTEEGMNLYTKMIESGHTPDRL 427

Query: 398 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
                I M+ + +  ++A+++   +   G     A++  L+  L  + RL +     E+M
Sbjct: 428 TYHLLIKMMCEEERLDLAVQVSKEMRARGCDLDLATSTMLVHLLCKMHRLEEAFAEFEDM 487

Query: 458 LNRRILIYEVTMHKLKKAF 476
           + R I+   +T  ++  A 
Sbjct: 488 IRRGIVPQYLTFERMNNAL 506



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/251 (21%), Positives = 110/251 (43%), Gaps = 10/251 (3%)

Query: 125 KNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV 183
           K  R EQ+W   R MK + V  ++ T+ ++ + YC   + ++A+     M   G+E +V+
Sbjct: 266 KLKRAEQLW---RTMKRENVKPTVVTYGTLVEGYCRMRRSEKAIELVGEMRGKGIEPNVI 322

Query: 184 AVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
             N ++ ++  +  +   A+  + R +     P   ++  L++G+ K G++  A+K    
Sbjct: 323 VYNPIIDSLA-EAGRFKEAMGMMERCLVSETGPTISTYNSLVKGFCKAGDLVGASKVLKM 381

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
           M+ R  ++P  +  Y  F     R  + +E +     M      P    +   + ++ + 
Sbjct: 382 MISR-GFDPT-LTTYNYFFRYFSRCGKTEEGMNLYTKMIESGHTPDRLTYHLLIKMMCEE 439

Query: 303 NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSL 362
                AVQ+   M   G +L  +L     ++ LLC    ++  F  F+ M+  G  P  L
Sbjct: 440 ERLDLAVQVSKEMRARGCDL--DLATSTMLVHLLCKMHRLEEAFAEFEDMIRRGIVPQYL 497

Query: 363 TYNMIFECLIK 373
           T+  +   L K
Sbjct: 498 TFERMNNALRK 508


>gi|115476116|ref|NP_001061654.1| Os08g0369200 [Oryza sativa Japonica Group]
 gi|113623623|dbj|BAF23568.1| Os08g0369200 [Oryza sativa Japonica Group]
 gi|125603197|gb|EAZ42522.1| hypothetical protein OsJ_27088 [Oryza sativa Japonica Group]
 gi|215740653|dbj|BAG97309.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 511

 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 87/376 (23%), Positives = 160/376 (42%), Gaps = 20/376 (5%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM- 173
           A++ +VD LG+  +F+  W  V     DG  +  TFA +   Y  AG   +AV +FD M 
Sbjct: 105 AYDAVVDALGRARQFDAAWRLVVEAAADGAATPRTFAVLARRYVAAGMTRQAVRAFDDME 164

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
           +  G E D     +LL  +C+ +     A E  N+ K   +P+   + +L+ GW K    
Sbjct: 165 AFVGREPDAAEFTTLLDTLCKYKYPKV-AAEVFNKRKYKYEPNEKMYTVLIYGWCKVNRN 223

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIR----------GKQVDEALKFLRVMKGE 283
           + A K   +M+  +     +++ Y   L  + R           + V  A   L+ M   
Sbjct: 224 DMAQKFLKDMI--YHGIEPNIVTYNILLNGICRHASLHPDYRFDRTVRAAEDLLKEMHQR 281

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
              P +  +S  L +  + +     + ++  M   G  + P +  Y +VI  L +   +D
Sbjct: 282 GIEPNVTSYSVILHVYSRAHKPELCLCMFRSMKERG--ICPTVATYTSVIKCLASCGRLD 339

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA- 402
           +     D+M   G  P   TYN  F+     K V+   + +++M K    P   +  T  
Sbjct: 340 DAESLLDEMASEGVCPSPATYNCFFKEYRGRKDVNGALQLYNKM-KAPGSPATPDIHTYN 398

Query: 403 --ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
             + M +  ++ +  +++WN + E+ + P   S   L+ GL +  +  +  +F  EM+ R
Sbjct: 399 ILLGMFIKLNQHDTVMQVWNDMCESTVGPDLNSYTLLVHGLCDNKKWREACQFFMEMIER 458

Query: 461 RILIYEVTMHKLKKAF 476
             L  ++T   L +  
Sbjct: 459 GFLPQKITFETLYRGL 474



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 117/271 (43%), Gaps = 12/271 (4%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE--------NQTSR 201
           +  +   +C   + D A      M  HG+E ++V  N LL+ ICR          ++T R
Sbjct: 210 YTVLIYGWCKVNRNDMAQKFLKDMIYHGIEPNIVTYNILLNGICRHASLHPDYRFDRTVR 269

Query: 202 ALEFLNRV--KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYET 259
           A E L +   ++ ++P+  S++++L  + +    E     F  M ER       V  Y +
Sbjct: 270 AAEDLLKEMHQRGIEPNVTSYSVILHVYSRAHKPELCLCMFRSMKERGIC--PTVATYTS 327

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG 319
            +  L    ++D+A   L  M  E   P+   ++          D   A+QL++ M   G
Sbjct: 328 VIKCLASCGRLDDAESLLDEMASEGVCPSPATYNCFFKEYRGRKDVNGALQLYNKMKAPG 387

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
               P++  YN ++G+    +  D V + ++ M      PD  +Y ++   L  NK+  E
Sbjct: 388 SPATPDIHTYNILLGMFIKLNQHDTVMQVWNDMCESTVGPDLNSYTLLVHGLCDNKKWRE 447

Query: 380 VEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
             +FF EMI+  + P  +   T    L+ AD
Sbjct: 448 ACQFFMEMIERGFLPQKITFETLYRGLIQAD 478


>gi|15240249|ref|NP_200948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171473|sp|Q9FLJ4.1|PP440_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g61400
 gi|9757861|dbj|BAB08495.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010079|gb|AED97462.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 144/315 (45%), Gaps = 7/315 (2%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G + + Y + + +  L ++ + E+      +MK+ GVL +L T++++ D YC  G   +A
Sbjct: 229 GIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQA 288

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICR-QENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
              +  + +  +  +VV   +L+   C+ +E  T+R+L F++ VK  VDP+   +  L+ 
Sbjct: 289 YGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSL-FVHMVKFGVDPNLYVYNCLIH 347

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G  K GN+ EA     EM E    +P+ V  Y   +  L    QV EA +  + MK E  
Sbjct: 348 GHCKSGNMLEAVGLLSEM-ESLNLSPD-VFTYTILINGLCIEDQVAEANRLFQKMKNERI 405

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
           FP+   +++ +    K  +   A+ L   M   G    PN+I ++ +I   CN  D+   
Sbjct: 406 FPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGVE--PNIITFSTLIDGYCNVRDIKAA 463

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
              + +M   G  PD +TY  + +   K   + E  + + +M++    P     A  +  
Sbjct: 464 MGLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDG 523

Query: 406 LLDADEPEIAIEIWN 420
                   +AI+ + 
Sbjct: 524 FWKEGRLSVAIDFYQ 538



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 84/382 (21%), Positives = 160/382 (41%), Gaps = 9/382 (2%)

Query: 104 WAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGA 160
           W  R  + SP   A   +++ L +  RF+ +W   ++M   G++  +  +  +F      
Sbjct: 153 WVSREMKCSPDSKACLSILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYFVLFQCCFKQ 212

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDS 219
           G Y +     D M+  G++ +V      +  +CR +N+   A +    +KK  V P+  +
Sbjct: 213 GLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCR-DNKMEEAEKMFELMKKHGVLPNLYT 271

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           ++ +++G+ K GNV +A   + E++   E  P +V+ + T +    + +++  A      
Sbjct: 272 YSAMIDGYCKTGNVRQAYGLYKEILVA-ELLP-NVVVFGTLVDGFCKARELVTARSLFVH 329

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
           M      P L  ++  +    K  +   AV L   M  +  NL P++  Y  +I  LC  
Sbjct: 330 MVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESL--NLSPDVFTYTILINGLCIE 387

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
           D V    R F +M     FP S TYN +     K   + +      EM  +  +P  +  
Sbjct: 388 DQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITF 447

Query: 400 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
           +T I    +  + + A+ ++  +   GI+P   +   L+        + +  R   +ML 
Sbjct: 448 STLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEALRLYSDMLE 507

Query: 460 RRILIYEVTMHKLKKAFYNESR 481
             I   + T   L   F+ E R
Sbjct: 508 AGIHPNDHTFACLVDGFWKEGR 529



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 79/352 (22%), Positives = 133/352 (37%), Gaps = 69/352 (19%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVR-VMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y ++ M+D   K G   Q +   + ++  + + ++  F ++ D +C A +   A   F  
Sbjct: 270 YTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVH 329

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEG 231
           M   GV+ ++   N L+   C+  N    A+  L+ ++ + + PD  ++ IL+ G   E 
Sbjct: 330 MVKFGVDPNLYVYNCLIHGHCKSGNML-EAVGLLSEMESLNLSPDVFTYTILINGLCIED 388

Query: 232 NVEEANKTFGEMV-ERF----------------EWNPEHVL---------AYETFLITL- 264
            V EAN+ F +M  ER                 E+N E  L           E  +IT  
Sbjct: 389 QVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFS 448

Query: 265 --------IRGKQVDEALKFLRVMKG------------------ENCFPTLKFFSNALDI 298
                   +R  +    L F   +KG                   N    L+ +S+ L+ 
Sbjct: 449 TLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEALRLYSDMLEA 508

Query: 299 LVKLNDSTHAV---QLWD---IMVGIGFNLMPNL-------IMYNAVIGLLCNNDDVDNV 345
            +  ND T A      W    + V I F    N        + +  +I  LC N  +   
Sbjct: 509 GIHPNDHTFACLVDGFWKEGRLSVAIDFYQENNQQRSCWNHVGFTCLIEGLCQNGYILRA 568

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
            RFF  M   G  PD  +Y  + +  ++ KR+ +      +MIK    P  L
Sbjct: 569 SRFFSDMRSCGITPDICSYVSMLKGHLQEKRITDTMMLQCDMIKTGILPNLL 620



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 103/226 (45%), Gaps = 9/226 (3%)

Query: 107 RGQRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           + +R+ P +  +N ++    K    EQ  +    M   GV  ++ TF+++ D YC     
Sbjct: 401 KNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDI 460

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
             A+  +  M++ G+  DVV   +L+ A  ++ N       + + ++  + P+  +FA L
Sbjct: 461 KAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACL 520

Query: 224 LEGWEKEGNVEEANKTFGE-MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           ++G+ KEG +  A   + E   +R  WN  HV  +   +  L +   +  A +F   M+ 
Sbjct: 521 VDGFWKEGRLSVAIDFYQENNQQRSCWN--HV-GFTCLIEGLCQNGYILRASRFFSDMRS 577

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
               P +  + + L   ++    T  + L   M+  G  ++PNL++
Sbjct: 578 CGITPDICSYVSMLKGHLQEKRITDTMMLQCDMIKTG--ILPNLLV 621


>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
 gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
          Length = 816

 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 90/400 (22%), Positives = 164/400 (41%), Gaps = 51/400 (12%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDE 165
           RG   SP  +N+M+D   K G  E+  + ++ M EDG V  + T+ ++ D  C + + +E
Sbjct: 387 RGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEE 446

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN-----QTSRALEFLNRVKKIVD----PD 216
           A++ F+ M   G   +  + N+++  +C+Q       Q  +  E    +K++ D    PD
Sbjct: 447 ALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPD 506

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
             +++ L+ G      V++A     +MV+R +  P  V+   T +  L +  ++ EA + 
Sbjct: 507 VVTYSTLISGLCSIARVDDARHLLEDMVKR-QCKPT-VVTQNTLIHGLCKAGRIKEAREV 564

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLL 336
           L  M      P +  ++  +    +   +  A +L   MV  G  L PN++ Y A++  L
Sbjct: 565 LDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARG--LAPNVVTYTALVSGL 622

Query: 337 CNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 396
           C  + +      F QM   G  P+  TY  +        +V    K F EM+     P  
Sbjct: 623 CKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDH 682

Query: 397 LNCAT-------------------------------------AITMLLDADEPEIAIEIW 419
           +   T                                     A+  LL+A + E+A+   
Sbjct: 683 VVYGTLAAELCKSGRSARALEILREGRESLRSEAWGDEVYRFAVDGLLEAGKMEMALGFV 742

Query: 420 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
             ++  G LP       L+ GL   G+  + R   EE+++
Sbjct: 743 RDMVRGGQLPAPERCASLVAGLCKSGQGGEARAVLEEIMD 782



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 108/460 (23%), Positives = 181/460 (39%), Gaps = 51/460 (11%)

Query: 76  GIIPTPDLVHEVLQ--LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMW 133
           GI P P L   V+Q   +      AV  F          P  +N+++D L K    E + 
Sbjct: 5   GIFPAPLLFTSVIQGWCNVGRTFEAVKIFSLMEECHSPYPDVYNVLIDSLSKRQETEAVK 64

Query: 134 NAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVM------------------- 173
             V+VM + G      TF +I    C AGK DEA +  D M                   
Sbjct: 65  KMVQVMVDRGCFPDSFTFTTILCGLCKAGKMDEAELVMDEMRSRMIPPYFATSSFLAHEL 124

Query: 174 ----SMHGVEQ--------DVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSF 220
               SM    Q        +  A N ++ A+C+   +   ALE    + +K +     S 
Sbjct: 125 CLRGSMERAFQLLEIMPVANSSAYNIVVVALCKAA-RVDDALELARTMSEKRIPLAAGSL 183

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
             +L G    G ++EA + +     R       ++     L       QVD+A + LR M
Sbjct: 184 DSVLVGLMDSGRIDEALQVY-----RENRREPCLVTLNVLLEGFCSRGQVDKARELLRAM 238

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWD----IMVGIGFNLMPNLIMYNAVIGLL 336
             E C P    +   LD L K      AV+L+            +  P+L  YN VI  L
Sbjct: 239 PDEECAPDEVSYCTVLDGLCKAGRVEEAVRLFGDRELPSSSSSSSSPPSLRGYNIVILGL 298

Query: 337 CNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 396
           C ND +D   + F++M      PDS +Y ++ + L K  ++++    F +++ +   P+ 
Sbjct: 299 CQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPST 358

Query: 397 LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD----VRR 452
           +   + I  L  A+  + A E++  +   G  P   + N ++      G L +    +++
Sbjct: 359 VAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKK 418

Query: 453 FAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLER 492
             E+     ++ Y   M  L K+   E   +  +F+ +ER
Sbjct: 419 MIEDGHVPDVVTYNTVMDGLCKSSRVEEALL--LFNEMER 456



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 79/346 (22%), Positives = 147/346 (42%), Gaps = 41/346 (11%)

Query: 111 LSPYAWN--LMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAV 167
           +SP +W+  +++D L K G+     N  + +   GV  S   + S+    C A  +D+A 
Sbjct: 319 VSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDAR 378

Query: 168 MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD----PDGDSFAIL 223
             F  M+  G     V  N ++ A C++        E  + +KK+++    PD  ++  +
Sbjct: 379 ELFADMNRRGCPPSPVTYNVMIDASCKR----GMLEEACDLIKKMIEDGHVPDVVTYNTV 434

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           ++G  K   VEEA   F EM ER    P    ++ T ++ L +  ++D+A +     +G+
Sbjct: 435 MDGLCKSSRVEEALLLFNEM-ERLGCTPNR-RSHNTIILGLCQQSKIDQACQ-----RGK 487

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
                      A  +L ++ D  H               +P+++ Y+ +I  LC+   VD
Sbjct: 488 --------LDEAFRLLKRMTDDGH---------------VPDVVTYSTLISGLCSIARVD 524

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
           +     + MV     P  +T N +   L K  R+ E  +    M+ +   P  +   T +
Sbjct: 525 DARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLV 584

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 449
                A + E A E+ + ++  G+ P   +   L+ GL    RL +
Sbjct: 585 HGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPE 630



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 81/368 (22%), Positives = 146/368 (39%), Gaps = 31/368 (8%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVM 173
            +N+++  L +N R ++       M E  V     ++  + D    AGK ++A   F  +
Sbjct: 290 GYNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKL 349

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              GV    VA  SL+  +C   +       F +  ++   P   ++ ++++   K G +
Sbjct: 350 LHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGML 409

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           EEA     +M+E  + +   V+ Y T +  L +  +V+EAL     M+   C P      
Sbjct: 410 EEACDLIKKMIE--DGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTP------ 461

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
                    N  +H      I++G+            + I   C    +D  FR   +M 
Sbjct: 462 ---------NRRSHNT----IILGL---------CQQSKIDQACQRGKLDEAFRLLKRMT 499

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G  PD +TY+ +   L    RV +      +M+K + +PT +   T I  L  A   +
Sbjct: 500 DDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIK 559

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 473
            A E+ + ++ +G  P   + N L+ G    G+    R    +M+ R +    VT   L 
Sbjct: 560 EAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALV 619

Query: 474 KAFYNESR 481
                 +R
Sbjct: 620 SGLCKANR 627


>gi|225452994|ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 588

 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 132/276 (47%), Gaps = 5/276 (1%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           +  N +VD L K G   +  + V +M   GV  ++ T+ ++ D +C   + D AV  FD 
Sbjct: 281 FTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDT 340

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M       +V++ N+L++  C+ ++       F    ++ + P+  ++  L+ G    G 
Sbjct: 341 MVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGR 400

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +++A   F EMV R +  P+ ++ Y T    L + + +D+A+  L+ ++G N  P ++ +
Sbjct: 401 LQDAISLFHEMVARGQI-PD-LVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIY 458

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  LD + +  +   A  L+  +   G  L PN+  YN +I  LC    +    + F +M
Sbjct: 459 TTILDGMCRAGELEDARDLFSNLSSKG--LQPNVWTYNIMIHGLCKQGLLAEASKLFSEM 516

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
             +G  P+  TYN+I    ++N       +   EM+
Sbjct: 517 NKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEML 552



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 86/388 (22%), Positives = 165/388 (42%), Gaps = 7/388 (1%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F +  G G + +   +  +++ L K G        +R M++     ++  F+++ DS C 
Sbjct: 163 FDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCK 222

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
             +  EA   F  M   G+  ++V  NSL+  +C+              V   + PD  +
Sbjct: 223 DRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFT 282

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
              +++   KEG V EA+     M+ R  E N   V+ Y   +       +VD A+K   
Sbjct: 283 LNTVVDALCKEGMVAEAHDVVDMMIHRGVEPN---VVTYNALMDGHCLRNEVDVAVKVFD 339

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            M  ++C   +  ++  ++   K+     A+ L++ M      L PN + YN +I  LC+
Sbjct: 340 TMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQ--ELTPNTVTYNTLIHGLCH 397

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
              + +    F +MV  G  PD +TY  + + L KN+ + +       +  + W P    
Sbjct: 398 VGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQI 457

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
             T +  +  A E E A ++++ +   G+ P   + N ++ GL   G L++  +   EM 
Sbjct: 458 YTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMN 517

Query: 459 NRRILIYEVTMHKLKKAFYNESRSMRDI 486
                  + T + + + F   + ++R I
Sbjct: 518 KNGCSPNDCTYNLITRGFLRNNEALRTI 545



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 138/315 (43%), Gaps = 16/315 (5%)

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV-DPDGDSFAILLEGWEKEG 231
           M   G+  DV  +  +++++C   N+   A   L ++ K+   PD  +F  L+ G   EG
Sbjct: 96  MDSFGIPPDVYTLAIVINSLCHL-NRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEG 154

Query: 232 NVEEANKTFGEMV-ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
            + EA   F +M+ E F+ N   V+ Y T +  L +      A++ LR M+  NC P + 
Sbjct: 155 KIGEALHLFDKMIGEGFQPN---VVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVV 211

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
            FS  +D L K    T A  ++  M+  G +  PN++ YN++I  LC   +  +V    +
Sbjct: 212 VFSTLIDSLCKDRQVTEAFNIFSEMITKGIS--PNIVTYNSLIHGLCKLCEWKHVTTLMN 269

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA- 409
           +MV     PD  T N + + L K   V E       MI    +P           L+D  
Sbjct: 270 EMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPN----VVTYNALMDGH 325

Query: 410 ---DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYE 466
              +E ++A+++++ ++    +    S N L+ G   +  +       EEM  + +    
Sbjct: 326 CLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNT 385

Query: 467 VTMHKLKKAFYNESR 481
           VT + L     +  R
Sbjct: 386 VTYNTLIHGLCHVGR 400



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 78/351 (22%), Positives = 145/351 (41%), Gaps = 7/351 (1%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSF 170
           S   +N ++  + K      + +  R M   G+   + T A + +S C   + D A  + 
Sbjct: 69  STVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSAL 128

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEK 229
             +   G + D     +L+  +C  E +   AL   ++ + +   P+  ++  L+ G  K
Sbjct: 129 AKILKLGHQPDATTFTTLIRGLC-VEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCK 187

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
            GN   A +    M E+    P +V+ + T + +L + +QV EA      M  +   P +
Sbjct: 188 VGNTSAAIRLLRSM-EQGNCQP-NVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNI 245

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
             +++ +  L KL +  H   L + MV     +MP++   N V+  LC    V       
Sbjct: 246 VTYNSLIHGLCKLCEWKHVTTLMNEMV--DSKIMPDVFTLNTVVDALCKEGMVAEAHDVV 303

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 409
           D M+  G  P+ +TYN + +       V    K F  M+  +     ++  T I      
Sbjct: 304 DMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKI 363

Query: 410 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
              + A+ ++  +    + P   + N L+ GL ++GRL D      EM+ R
Sbjct: 364 QSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVAR 414



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/263 (21%), Positives = 101/263 (38%), Gaps = 6/263 (2%)

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           ++EA  TF  M+ +    P   + +   L ++ + K     L   R M      P +   
Sbjct: 51  LDEALSTFNRMLHK--QPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTL 108

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  ++ L  LN    A      ++ +G    P+   +  +I  LC    +      FD+M
Sbjct: 109 AIVINSLCHLNRVDFAFSALAKILKLGHQ--PDATTFTTLIRGLCVEGKIGEALHLFDKM 166

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
           +  G  P+ +TY  +   L K        +    M +   QP  +  +T I  L    + 
Sbjct: 167 IGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQV 226

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
             A  I++ ++  GI P   + N L+ GL  L     V     EM++ +I+    T++ +
Sbjct: 227 TEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTV 286

Query: 473 KKAFYNES--RSMRDIFDSLERR 493
             A   E       D+ D +  R
Sbjct: 287 VDALCKEGMVAEAHDVVDMMIHR 309


>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Cucumis sativus]
          Length = 581

 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 109/483 (22%), Positives = 200/483 (41%), Gaps = 58/483 (12%)

Query: 55  IICEILAHA--SSDDIESALACTGIIPT---PDLVHEVLQLSYDSPSSAVD-----FFRW 104
           ++C  L     +S +++ A+    I+ T   PD+      +S  S ++ +D     F R 
Sbjct: 98  VLCTKLIKGFFNSRNLKKAMRVMEILETYGDPDVYSYNAMISGFSKANQIDSANQVFDRM 157

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
             RG       +N+M+  L   G+ E  +  +  + +DG   S+ T+  + ++    G+ 
Sbjct: 158 RSRGFSPDVVTYNIMIGSLCSRGKLELAFEVMDELLKDGCKPSVITYTILIEATILEGRI 217

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAI 222
           +EA+  FD +   G+  D+   N+++  IC+ E    RAL+F+  +  +  +PD  S+ I
Sbjct: 218 NEALELFDELVSRGLRPDLYTYNAIIRGICK-EGMEDRALDFVRHLSARGCNPDVVSYNI 276

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           LL  +  +   E+  +   +MV        +V+ +   + +  R  +V EA+  L VMK 
Sbjct: 277 LLRSFLNKSRWEDGERLMKDMV--LSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKE 334

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
           +   P    +   +    K      A++  + MV  G   +P+++ YN ++  LC     
Sbjct: 335 KGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDG--CLPDIVNYNTILATLCKFGCA 392

Query: 343 D---NVFRFFD--------------------------------QMVFHGAFPDSLTYNMI 367
           D   +VF   D                                +M+  G  PD +TYN +
Sbjct: 393 DLALDVFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNSL 452

Query: 368 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 427
             CL ++  V E      +M    +QPT ++    +  +  A      IE+   ++E G 
Sbjct: 453 ISCLCRDGLVDEAIGLLVDMEATRFQPTVISFNIVLLGMCKAHRVFEGIELLITMVEKGC 512

Query: 428 LPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIF 487
           LP E S   L+ G+   G  ++    A   L R  +I   +  +L K F      M D++
Sbjct: 513 LPNETSYVLLIEGIAYAGWRAEAMELANS-LYRLGVISGDSSKRLNKTF-----PMLDVY 566

Query: 488 DSL 490
             L
Sbjct: 567 KGL 569



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/307 (21%), Positives = 140/307 (45%), Gaps = 5/307 (1%)

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI 212
           + +  C AGK++E++   + +   G + DVV    L+       N   +A+  +  ++  
Sbjct: 68  LLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRN-LKKAMRVMEILETY 126

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
            DPD  S+  ++ G+ K   ++ AN+ F  M  R  ++P+ V+ Y   + +L    +++ 
Sbjct: 127 GDPDVYSYNAMISGFSKANQIDSANQVFDRMRSR-GFSPD-VVTYNIMIGSLCSRGKLEL 184

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAV 332
           A + +  +  + C P++  ++  ++  +       A++L+D +V  G  L P+L  YNA+
Sbjct: 185 AFEVMDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRG--LRPDLYTYNAI 242

Query: 333 IGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 392
           I  +C     D    F   +   G  PD ++YN++    +   R  + E+   +M+ +  
Sbjct: 243 IRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGC 302

Query: 393 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 452
           +P  +  +  I+          A+ +   + E G+ P   S + L+      GRL     
Sbjct: 303 EPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIE 362

Query: 453 FAEEMLN 459
           + E+M++
Sbjct: 363 YLEKMVS 369



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/220 (20%), Positives = 99/220 (45%), Gaps = 11/220 (5%)

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN 325
           R  + +E+L FL  +  +   P +   +  +       +   A+++ +I+   G    P+
Sbjct: 74  RAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVMEILETYG---DPD 130

Query: 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 385
           +  YNA+I      + +D+  + FD+M   G  PD +TYN++   L    ++    +   
Sbjct: 131 VYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVMD 190

Query: 386 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
           E++K+  +P+ +     I   +       A+E+++ ++  G+ P   + N ++ G+   G
Sbjct: 191 ELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICKEG 250

Query: 446 ----RLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
                L  VR  +    N  ++ Y +    L ++F N+SR
Sbjct: 251 MEDRALDFVRHLSARGCNPDVVSYNI----LLRSFLNKSR 286


>gi|356530056|ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 694

 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 132/277 (47%), Gaps = 7/277 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y + +++D L K G+ ++  N + VM ++GV  ++ T++++ D YC  G+   A   F  
Sbjct: 343 YTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHA 402

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEG 231
           M    V   V + N +++ +C+ ++    A+  L   + K V P+  ++  L++G  K G
Sbjct: 403 MVQTEVNPSVCSYNIMINGLCKGKS-VDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSG 461

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            +  A     E+  R    P  V+ Y + L  L + + +D+A+     MK     P    
Sbjct: 462 RITSALDLMKELHHR--GQPADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYT 519

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           ++  +D L K     +A +L+  ++  G  +  ++  YN +IG LC    +D       +
Sbjct: 520 YTALIDGLCKGARLKNAQKLFQHILVKGCCI--DVYTYNVMIGGLCKEGMLDEALAMKSK 577

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           M  +G  PD++T+ +I   L +     + EK  HEMI
Sbjct: 578 MEDNGCIPDAVTFEIIIRSLFEKDENDKAEKLLHEMI 614



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 150/357 (42%), Gaps = 38/357 (10%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           R  R     +N ++D L K+    + ++    M   G+   + T++++   +C AG+   
Sbjct: 266 RSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMG 325

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILL 224
           A    + M++  +  DV     L+ A+C+ E +   A   L    K+ V P+  +++ L+
Sbjct: 326 AFSLLNEMTLKNINPDVYTYTILIDALCK-EGKLKEAKNLLGVMTKEGVKPNVVTYSTLM 384

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           +G+   G V  A + F  MV+  E NP  V +Y   +  L +GK VDEA+  LR M  +N
Sbjct: 385 DGYCLVGEVHNAKQIFHAMVQT-EVNPS-VCSYNIMINGLCKGKSVDEAMNLLREMLHKN 442

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLW----------------DIMVGIGFN------- 321
             P    +++ +D L K    T A+ L                  ++ G+  N       
Sbjct: 443 VVPNTVTYNSLIDGLCKSGRITSALDLMKELHHRGQPADVITYTSLLDGLCKNQNLDKAI 502

Query: 322 ----------LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECL 371
                     + PN   Y A+I  LC    + N  + F  ++  G   D  TYN++   L
Sbjct: 503 ALFMKMKERGIQPNKYTYTALIDGLCKGARLKNAQKLFQHILVKGCCIDVYTYNVMIGGL 562

Query: 372 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 428
            K   + E      +M  N   P  +     I  L + DE + A ++ + ++  G+L
Sbjct: 563 CKEGMLDEALAMKSKMEDNGCIPDAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGLL 619



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/352 (21%), Positives = 150/352 (42%), Gaps = 10/352 (2%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  F  I  S      +  A+     M + G+E D+V ++ L++  C    Q + +   
Sbjct: 131 SIIEFGKILGSLVKMKHFPTAISLSKQMEVKGIEPDLVTLSILINCFCHL-GQMAFSFSV 189

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLIT 263
           L ++ K+   P+      L++G   +G V+++     ++V + F+ N    ++Y T L  
Sbjct: 190 LGKILKLGYQPNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQGFQMNQ---VSYGTLLNG 246

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLM 323
           L +  +   A+K LR+++  +  P +  ++  +D L K      A   +  M   G  + 
Sbjct: 247 LCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRG--IF 304

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           P++I Y+ +I   C    +   F   ++M      PD  TY ++ + L K  ++ E +  
Sbjct: 305 PDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNL 364

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
              M K   +P  +  +T +       E   A +I++ +++  + P   S N ++ GL  
Sbjct: 365 LGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCK 424

Query: 444 LGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLERR 493
              + +      EML++ ++   VT + L        R  S  D+   L  R
Sbjct: 425 GKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHHR 476



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/349 (22%), Positives = 145/349 (41%), Gaps = 20/349 (5%)

Query: 122 VLGKNGRFEQMWNAVRVMKEDGVLS----LPTFASIFDSYCGAGKYDEAVMSFDVMSM-- 175
           +LG   + +    A+ + K+  V      L T + + + +C  G   +   SF V+    
Sbjct: 138 ILGSLVKMKHFPTAISLSKQMEVKGIEPDLVTLSILINCFCHLG---QMAFSFSVLGKIL 194

Query: 176 -HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNV 233
             G + + + + +L+  +C +  +  ++L F ++V  +    +  S+  LL G  K G  
Sbjct: 195 KLGYQPNTIILTTLMKGLCLK-GEVKKSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGET 253

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
             A K    M+E     P+ V+ Y T +  L + K V+EA  F   M     FP +  +S
Sbjct: 254 RCAIKLL-RMIEDRSTRPD-VVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYS 311

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +           A  L + M     N  P++  Y  +I  LC    +         M 
Sbjct: 312 TLICGFCLAGQLMGAFSLLNEMTLKNIN--PDVYTYTILIDALCKEGKLKEAKNLLGVMT 369

Query: 354 FHGAFPDSLTYNMIFE--CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
             G  P+ +TY+ + +  CL+    VH  ++ FH M++ E  P+  +    I  L     
Sbjct: 370 KEGVKPNVVTYSTLMDGYCLVG--EVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKS 427

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
            + A+ +   +L   ++P   + N L+ GL   GR++      +E+ +R
Sbjct: 428 VDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHHR 476


>gi|15221671|ref|NP_176495.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169919|sp|Q9CAN6.1|PPR97_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63070, mitochondrial; Flags: Precursor
 gi|12323265|gb|AAG51617.1|AC010795_21 unknown protein; 38394-36551 [Arabidopsis thaliana]
 gi|332195929|gb|AEE34050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 590

 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 85/358 (23%), Positives = 160/358 (44%), Gaps = 7/358 (1%)

Query: 83  LVHEVLQLSYDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE 141
           LVH + Q  ++  S AV    R   +G +     +  +++ L K G  +   N +  M++
Sbjct: 186 LVHGLFQ--HNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEK 243

Query: 142 DGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS 200
             +   +  + +I D  C     D+A   F+ M   G++ DV   N L+S +C     + 
Sbjct: 244 GKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSD 303

Query: 201 RALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF 260
            +    + ++K ++PD   F  L++ + KEG + EA K + EMV+     P+ V+AY T 
Sbjct: 304 ASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPD-VVAYNTL 362

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF 320
           +    + K+V+E ++  R M           ++  +    +  D  +A  ++  MV  G 
Sbjct: 363 IKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGV 422

Query: 321 NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEV 380
           +  P+++ YN ++  LCNN +V+     F+ M       D +TY  + E L K  +V + 
Sbjct: 423 H--PDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDG 480

Query: 381 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 438
              F  +     +P  +   T ++        E A  ++  + E+G LP   + N L+
Sbjct: 481 WDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLI 538



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 146/336 (43%), Gaps = 11/336 (3%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+ T  S+ + +C   +  EAV   D M   G + D V   +L+  +  Q N+ S A+  
Sbjct: 144 SIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGL-FQHNKASEAVAL 202

Query: 206 LNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           + R V K   PD  ++  ++ G  K G  + A     +M E+ +   + V+ Y T +  L
Sbjct: 203 VERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKM-EKGKIEAD-VVIYNTIIDGL 260

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
            + K +D+A      M+ +   P +  ++  +  L      + A +L   M  +  N+ P
Sbjct: 261 CKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDM--LEKNINP 318

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMV-FHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           +L+ +NA+I        +    + +D+MV     FPD + YN + +   K KRV E  + 
Sbjct: 319 DLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEV 378

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
           F EM +       +   T I     A + + A  ++  ++ +G+ P   + N LL GL N
Sbjct: 379 FREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCN 438

Query: 444 LGRLSDVRRFAEEMLNR----RILIYEVTMHKLKKA 475
            G +       E M  R     I+ Y   +  L KA
Sbjct: 439 NGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKA 474



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 76/356 (21%), Positives = 148/356 (41%), Gaps = 19/356 (5%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  F+ +  +     K+D  +   + M   G+  ++   +  ++  CR+ +Q S AL  
Sbjct: 74  SIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRR-SQLSLALAI 132

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L ++ K+   P   +   LL G+     + EA     +MVE   + P+ V  + T +  L
Sbjct: 133 LGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVE-MGYQPDTV-TFTTLVHGL 190

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
            +  +  EA+  +  M  + C P L  +   ++ L K  +   A+ L + M      +  
Sbjct: 191 FQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKME--KGKIEA 248

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           ++++YN +I  LC    +D+ F  F++M   G  PD  TYN +  CL    R  +  +  
Sbjct: 249 DVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLL 308

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG-ILPLEASANELLVGLRN 443
            +M++    P  +     I   +   +   A ++++ ++++    P   + N L+ G   
Sbjct: 309 SDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCK 368

Query: 444 LGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQM 499
             R+ +      EM  R ++   VT   L   F+              R C  +QM
Sbjct: 369 YKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQ------------ARDCDNAQM 412



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 72/336 (21%), Positives = 139/336 (41%), Gaps = 9/336 (2%)

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSF 220
           K D+A+  F  M        +V  + LLSAI +  N+    +    +++ + +  +  ++
Sbjct: 55  KLDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKM-NKFDLVISLGEQMQNLGISHNLYTY 113

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
           +I +  + +   +  A    G+M+ +  + P  ++   + L     G ++ EA+  +  M
Sbjct: 114 SIFINYFCRRSQLSLALAILGKMM-KLGYGPS-IVTLNSLLNGFCHGNRISEAVALVDQM 171

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
                 P    F+  +  L + N ++ AV L + MV  G    P+L+ Y AVI  LC   
Sbjct: 172 VEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKG--CQPDLVTYGAVINGLCKRG 229

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
           + D      ++M       D + YN I + L K K + +    F++M     +P      
Sbjct: 230 EPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYN 289

Query: 401 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
             I+ L +      A  + + +LE  I P     N L+      G+L +  +  +EM+  
Sbjct: 290 PLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKS 349

Query: 461 RILIYEVTMHK-LKKAF--YNESRSMRDIFDSLERR 493
           +    +V  +  L K F  Y       ++F  + +R
Sbjct: 350 KHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQR 385


>gi|357151708|ref|XP_003575878.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Brachypodium distachyon]
          Length = 676

 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 88/395 (22%), Positives = 166/395 (42%), Gaps = 10/395 (2%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
           G+G  L      ++V V  + GRF  +    R M E G   ++  + +  D  C      
Sbjct: 213 GQGFCLDNATCTVIVRVFCQKGRFRDVSELFRRMLEMGTPPNVVNYTAWIDGLCKRAYVK 272

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKI-VDPDGDSFAI 222
           +A    + M   G++ +V    SL++ +C+    T RA   FL  +K     P+  ++ +
Sbjct: 273 QAFYVLEEMVAKGLKPNVYTHTSLINGLCKI-GWTERAFRLFLKLIKSSSYKPNVHTYTV 331

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           ++ G+ KEG +  A    G MVE  +    +   Y T +    +    + A + +  M+ 
Sbjct: 332 MIGGYCKEGKLARAEMLLGRMVE--QGLAPNTNTYTTLISGHCKEGSFNCAFELMNKMRR 389

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
           E   P +  ++  +D L K      A ++  +    G  L  + + Y  +I   C    +
Sbjct: 390 EGFQPNIYTYNALIDGLCKKGKIQEAYKVLRMANNQGLQL--DKVTYTVMITEHCKQGHI 447

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
                 F++M  +G  PD  TY  +     + +++ E +K F + +  E  PT     + 
Sbjct: 448 TYALDLFNRMAENGCHPDIHTYTTLIARYCQQRQMEESQKLFDKCLAIELVPTKQTYTSM 507

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
           I       +   A+ ++  +++NG      +   L+ GL    RL + R   E ML++R+
Sbjct: 508 IAGYCKVGKSTSALRVFERMVQNGCQADSITYGALISGLCKESRLEEARALYEGMLDKRL 567

Query: 463 LIYEVTMHKLKKAFYNESRSM--RDIFDSLERRCK 495
           +  EVT   L   +    +++    I D L++R K
Sbjct: 568 VPCEVTPVTLAFEYCRREKAVVAVSILDRLDKRRK 602



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 53/255 (20%), Positives = 105/255 (41%), Gaps = 5/255 (1%)

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           PD  SF  L+ G  ++G +EE +     M  +  +  ++        +   +G+  D + 
Sbjct: 183 PDARSFRALIVGCCRDGRMEEVDALLTVMQGQ-GFCLDNATCTVIVRVFCQKGRFRDVSE 241

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
            F R+++     P +  ++  +D L K      A  + + MV  G  L PN+  + ++I 
Sbjct: 242 LFRRMLE-MGTPPNVVNYTAWIDGLCKRAYVKQAFYVLEEMVAKG--LKPNVYTHTSLIN 298

Query: 335 LLCNNDDVDNVFRFFDQMVFHGAF-PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
            LC     +  FR F +++   ++ P+  TY ++     K  ++   E     M++    
Sbjct: 299 GLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLA 358

Query: 394 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 453
           P      T I+          A E+ N +   G  P   + N L+ GL   G++ +  + 
Sbjct: 359 PNTNTYTTLISGHCKEGSFNCAFELMNKMRREGFQPNIYTYNALIDGLCKKGKIQEAYKV 418

Query: 454 AEEMLNRRILIYEVT 468
                N+ + + +VT
Sbjct: 419 LRMANNQGLQLDKVT 433


>gi|125561327|gb|EAZ06775.1| hypothetical protein OsI_29018 [Oryza sativa Indica Group]
          Length = 511

 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 87/376 (23%), Positives = 160/376 (42%), Gaps = 20/376 (5%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM- 173
           A++ +VD LG+  +F+  W  V     DG  +  TFA +   Y  AG   +AV +FD M 
Sbjct: 105 AYDAVVDALGRARQFDAAWRLVVEAAADGAATPRTFAVLARRYVAAGMTRQAVRAFDDME 164

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
           +  G E D     +LL  +C+ +     A E  N+ K   +P+   + +L+ GW K    
Sbjct: 165 AFVGREPDAAEFTTLLDTLCKYKYPKV-AAEVFNKRKYKYEPNEKMYTVLIYGWCKVNRN 223

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIR----------GKQVDEALKFLRVMKGE 283
           + A K   +M+  +     +++ Y   L  + R           + V  A   L+ M   
Sbjct: 224 DMAQKFLKDMI--YHGIEPNIVTYNILLNGICRHASLHPDYRFDRTVRAAEDLLKEMHQR 281

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
              P +  +S  L +  + +     + ++  M   G  + P +  Y +VI  L +   +D
Sbjct: 282 GIEPDVTSYSVILHVYSRAHKPELCLCMFRSMKERG--ICPTVATYTSVIKCLASCGRLD 339

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA- 402
           +     D+M   G  P   TYN  F+     K V+   + +++M K    P   +  T  
Sbjct: 340 DAESLLDEMASEGVCPSPATYNCFFKEYRGRKDVNGALQLYNKM-KAPGSPATPDIHTYN 398

Query: 403 --ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
             + M +  ++ +  +++WN + E+ + P   S   L+ GL +  +  +  +F  EM+ R
Sbjct: 399 ILLGMFIKLNQHDTVMQVWNDMCESTVGPDLNSYTLLVHGLCDNKKWREACQFFMEMIER 458

Query: 461 RILIYEVTMHKLKKAF 476
             L  ++T   L +  
Sbjct: 459 GFLPQKITFETLYRGL 474



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 117/271 (43%), Gaps = 12/271 (4%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE--------NQTSR 201
           +  +   +C   + D A      M  HG+E ++V  N LL+ ICR          ++T R
Sbjct: 210 YTVLIYGWCKVNRNDMAQKFLKDMIYHGIEPNIVTYNILLNGICRHASLHPDYRFDRTVR 269

Query: 202 ALEFLNRV--KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYET 259
           A E L +   ++ ++PD  S++++L  + +    E     F  M ER       V  Y +
Sbjct: 270 AAEDLLKEMHQRGIEPDVTSYSVILHVYSRAHKPELCLCMFRSMKERGIC--PTVATYTS 327

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG 319
            +  L    ++D+A   L  M  E   P+   ++          D   A+QL++ M   G
Sbjct: 328 VIKCLASCGRLDDAESLLDEMASEGVCPSPATYNCFFKEYRGRKDVNGALQLYNKMKAPG 387

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
               P++  YN ++G+    +  D V + ++ M      PD  +Y ++   L  NK+  E
Sbjct: 388 SPATPDIHTYNILLGMFIKLNQHDTVMQVWNDMCESTVGPDLNSYTLLVHGLCDNKKWRE 447

Query: 380 VEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
             +FF EMI+  + P  +   T    L+ AD
Sbjct: 448 ACQFFMEMIERGFLPQKITFETLYRGLIQAD 478


>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
          Length = 667

 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 141/302 (46%), Gaps = 7/302 (2%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F ++ +  C  G+  EAV   D M   G++ + +   +++  +C+  +  S AL  L ++
Sbjct: 180 FTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVS-ALNLLRKM 238

Query: 210 KKI--VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           +++  + P+   ++ +++G  K+G   +A   F EM E+   +P ++  Y   +      
Sbjct: 239 EEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEK-GISP-NLFTYNCMINGFCSS 296

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
            +  EA + LR M      P +  FS  ++ LVK      A +L++ M+  G  ++PN I
Sbjct: 297 GRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRG--IIPNTI 354

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            YN++I      + +D   R F  M   G  PD +T++++ +     KRV +  K  HEM
Sbjct: 355 TYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEM 414

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
            +       +   T I           A+++   ++ +G+ P   + N LL GL N G+L
Sbjct: 415 SRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKL 474

Query: 448 SD 449
            D
Sbjct: 475 KD 476



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/395 (22%), Positives = 170/395 (43%), Gaps = 20/395 (5%)

Query: 97  SAVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASI 153
           SA++  R      R+ P    ++ ++D L K+GR     N    M+E G+  +L T+  +
Sbjct: 230 SALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCM 289

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKI 212
            + +C +G++ EA      M    +  DVV  + L++A+ + E +   A E  N  + + 
Sbjct: 290 INGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVK-EGKFFEAEELYNEMLPRG 348

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
           + P+  ++  +++G+ K+  ++ A + F  M  +   +P+ V+ +   +      K+VD+
Sbjct: 349 IIPNTITYNSMIDGFSKQNRLDAAERMFYLMATK-GCSPD-VITFSILIDGYCGAKRVDD 406

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAV 332
            +K L  M           ++  +    +L +   A+ L   M+  G  + PN++  N +
Sbjct: 407 GMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSG--VCPNVVTCNTL 464

Query: 333 IGLLCNNDDVDNVFRFFDQMV-----------FHGAFPDSLTYNMIFECLIKNKRVHEVE 381
           +  LCNN  + +    F  M            F+   PD  TYN++   LI   +  E E
Sbjct: 465 LDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAE 524

Query: 382 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 441
           + + EM      P  +   + I  L      + A ++++ +   G  P   +   L+ G 
Sbjct: 525 ELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGY 584

Query: 442 RNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
             +GR+ D      EM  R I+   +T   L   F
Sbjct: 585 CKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGF 619



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/388 (20%), Positives = 160/388 (41%), Gaps = 14/388 (3%)

Query: 111 LSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAV 167
           +SP  + +N M++    +GR+ +    +R M E  +   + TF+ + ++    GK+ EA 
Sbjct: 279 ISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAE 338

Query: 168 MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW 227
             ++ M   G+  + +  NS++    +Q    +    F     K   PD  +F+IL++G+
Sbjct: 339 ELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGY 398

Query: 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
                V++  K   EM  R      + + Y T +    +   ++ AL  L+ M      P
Sbjct: 399 CGAKRVDDGMKLLHEMSRR--GLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCP 456

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL---------MPNLIMYNAVIGLLCN 338
            +   +  LD L        A++++ +M     +L          P++  YN +I  L N
Sbjct: 457 NVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLIN 516

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
                     +++M   G  PD++TYN + + L K  R+ E  + F  M    + P  + 
Sbjct: 517 EGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVT 576

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
             T I            +E++  +   GI+    +   L+ G   +G ++      +EM+
Sbjct: 577 FTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEMI 636

Query: 459 NRRILIYEVTMHKLKKAFYNESRSMRDI 486
           +  +    +T+  +    +++    R +
Sbjct: 637 SSGVYPDTITIRNMLTGLWSKEELKRAV 664



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 90/384 (23%), Positives = 162/384 (42%), Gaps = 15/384 (3%)

Query: 98  AVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP----TFASI 153
           A+D F +  R + L P   +    +LG   R E+    + + ++  +  +P    +F  +
Sbjct: 60  AIDLFGYMVRSRPL-PCVIDF-CKLLGVVVRMERPDVVISLHRKMEMRRIPCNIYSFTIL 117

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV 213
              +C   K   A+ +F  ++  G    +V  ++LL  +C  E++ S AL F +++ K  
Sbjct: 118 IKCFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLC-VEDRVSEALHFFHQICK-- 174

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
            P+  +F  L+ G  +EG V EA      MVE     P  +  Y T +  + +      A
Sbjct: 175 -PNVIAFTTLMNGLCREGRVVEAVALLDRMVED-GLQPNQI-TYGTIVDGMCKMGDTVSA 231

Query: 274 LKFLRVMKG-ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAV 332
           L  LR M+      P +  +S  +D L K    T A  L+  M   G +  PNL  YN +
Sbjct: 232 LNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGIS--PNLFTYNCM 289

Query: 333 IGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 392
           I   C++       R   +M      PD +T++++   L+K  +  E E+ ++EM+    
Sbjct: 290 INGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGI 349

Query: 393 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 452
            P  +   + I      +  + A  ++  +   G  P   + + L+ G     R+ D  +
Sbjct: 350 IPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMK 409

Query: 453 FAEEMLNRRILIYEVTMHKLKKAF 476
              EM  R ++   +T   L   F
Sbjct: 410 LLHEMSRRGLVANTITYTTLIHGF 433



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/322 (22%), Positives = 134/322 (41%), Gaps = 14/322 (4%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG   +   +N M+D   K  R +       +M   G    + TF+ + D YCGA + D+
Sbjct: 347 RGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDD 406

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILL 224
            +     MS  G+  + +   +L+   C+  N  + AL+ L   +   V P+  +   LL
Sbjct: 407 GMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNA-ALDLLQEMISSGVCPNVVTCNTLL 465

Query: 225 EGWEKEGNVEEANKTFGEMVE-RFEWNPEH--------VLAYETFLITLIRGKQVDEALK 275
           +G    G +++A + F  M + + + +  H        V  Y   +  LI   +  EA +
Sbjct: 466 DGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEE 525

Query: 276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGL 335
               M      P    +++ +D L K +    A Q++D M   GF+  P+++ +  +I  
Sbjct: 526 LYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFS--PDVVTFTTLING 583

Query: 336 LCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 395
            C    V +    F +M   G   +++TY  +     +   ++     F EMI +   P 
Sbjct: 584 YCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEMISSGVYPD 643

Query: 396 PLNCATAITMLLDADEPEIAIE 417
            +     +T L   +E + A++
Sbjct: 644 TITIRNMLTGLWSKEELKRAVQ 665


>gi|297843042|ref|XP_002889402.1| hypothetical protein ARALYDRAFT_470202 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297335244|gb|EFH65661.1| hypothetical protein ARALYDRAFT_470202 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 490

 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 85/371 (22%), Positives = 169/371 (45%), Gaps = 22/371 (5%)

Query: 67  DIESALACTGIIPTPDLVHEVLQ---LSYDSPSSAVDFFRWAG--RGQRLSPYAWNLMVD 121
           +++ +L+ +GI  + DL+  VL+    S+ +P   ++F+R+AG  RG   S ++ + M+ 
Sbjct: 56  ELKESLSSSGIHLSKDLIDRVLKRVRFSHGNPIQTLEFYRYAGARRGFYHSSFSLDTMLY 115

Query: 122 VLGKNGRFEQMWNA-VRVMKEDGVLSLPTFASIF----DSYCGAGKYDEAVMSFDVMSMH 176
           +LG+N +F+Q+W   +   ++D  L  P    +        C   +  E+   F  +   
Sbjct: 116 ILGRNRKFDQIWEILIETKRKDRSLISPRTMQVVLGRVAKLCSVRQTVESFWKFKRLVPD 175

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA 236
               D    N+LL  +C QE   + A    + +K    PD  +F ILL GW+     E  
Sbjct: 176 FF--DTACFNALLRTLC-QEKSMTDARNVYHSLKHQFQPDLQTFNILLSGWKSSEEAEAF 232

Query: 237 NKTF-GEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
            +   G+ ++     P+ V+ Y + +    + +++++A K +  M+ E+  P +  ++  
Sbjct: 233 FEEMKGKGLK-----PD-VVTYNSLIDVYCKDREIEKAYKLIDKMREEDETPDVITYTTI 286

Query: 296 LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
           +  L  +     A ++   M   G    P++  YNA I   C    + +  +  D+MV  
Sbjct: 287 IGGLGLIGQPDKAREVLKEMKEYG--CYPDVAAYNAAIRNYCIARRLGDADKLVDEMVKK 344

Query: 356 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 415
           G  P++ TYN+ F  L     +    + +  M+ N   P   +C   I M    ++ ++A
Sbjct: 345 GLSPNATTYNLFFRVLSLANDLGRSWELYERMLGNGCLPNTQSCMFLIKMFKRHEKVDMA 404

Query: 416 IEIWNYILENG 426
           + +W  ++  G
Sbjct: 405 MRLWEDMVVKG 415


>gi|224136310|ref|XP_002326829.1| predicted protein [Populus trichocarpa]
 gi|222835144|gb|EEE73579.1| predicted protein [Populus trichocarpa]
          Length = 664

 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 106/413 (25%), Positives = 182/413 (44%), Gaps = 23/413 (5%)

Query: 65  SDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR-GQRLSPYAWNLMVDVL 123
           S ++ES+L       +     +VL+    SP  A +FF WA R G      ++ +M+D+L
Sbjct: 11  STELESSLFSLSPSISKTTFFQVLRF-IASPPKAFEFFNWASRNGFAHDSRSYFMMLDIL 69

Query: 124 GKNGRFEQMWNAVRVM--KEDGVLSLPT--FASIFDSYCGAGKYDEAVMSFDVMSMHGVE 179
           G+NG      N +  +  + +G + +      ++  SY  AG ++EA+  F +M   GV 
Sbjct: 70  GRNGNLNIARNFLFSIERRSNGSVKIEDRFCNTLLRSYGNAGLFNEAIKLFSLMKSSGVS 129

Query: 180 QDVVAVNSLLSAICRQENQTSRALEFLNRVKKI--VDPDGDSFAILLEGWEKEGNVEEAN 237
             V+  NSLL  I  +  +T+ A    + +     V PD  +F IL+ G+ K   V+E  
Sbjct: 130 PSVITFNSLL-LILLKRGRTNMAHSVFDEMCGTYGVTPDTYTFNILIRGFCKNSMVDEGF 188

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM--KGENCFPTLKFFSNA 295
           + F EM  RF   P+ V+ Y T +  L R  +V  A   ++ M  K ++  P +  ++  
Sbjct: 189 RFFKEM-SRFNCEPD-VVTYNTLVDGLCRAGKVRIAHNVVKGMVKKMKDLSPDVVTYTTL 246

Query: 296 LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
           +       +   A+ +++ MV  G  L PN I YN +I  LC     D +       V  
Sbjct: 247 VRGYCMKQEIDEALVVFEEMVSRG--LKPNDITYNTLIKGLCEVQKFDKIKEILGGAVGG 304

Query: 356 GAF-PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 414
             F PD+ TYN +           E  K F +M + + QP     +  I  L    + E 
Sbjct: 305 RGFVPDTCTYNTLMNAQCDAGNFDEALKMFKKMKELKVQPDSATYSVLIRNLCQRGDFER 364

Query: 415 AIEIWN-------YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           A ++++        + ++G  PL A+ N +   L   G+     R   +++ +
Sbjct: 365 AEQLFDKLSDEDILLRDDGCTPLVAAYNPIFDFLCKNGKTHKAERVFRQLMKK 417



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/303 (19%), Positives = 132/303 (43%), Gaps = 17/303 (5%)

Query: 115 AWNLMVDVLGKNGRFE---QMWNAVR----VMKEDGVLSL-PTFASIFDSYCGAGKYDEA 166
            +++++  L + G FE   Q+++ +     ++++DG   L   +  IFD  C  GK  +A
Sbjct: 348 TYSVLIRNLCQRGDFERAEQLFDKLSDEDILLRDDGCTPLVAAYNPIFDFLCKNGKTHKA 407

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
              F  +   G  QD  +  +L+   C++    +     L  +++   PD +++ +L+ G
Sbjct: 408 ERVFRQLMKKGT-QDPPSYKTLIIGHCKEGTFEAGYKLLLFMLRRDYVPDFETYVLLING 466

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
           + ++G    A KT   M++   + P+  + + + L  L++     E+  F+ +M      
Sbjct: 467 FLQKGEPILAYKTLERMLKS-SYLPKTSV-FHSILSELLKNDFARESASFVVLMIDRKIR 524

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346
             +   ++ + +L        A Q+ +++   G+     ++    +IG +C N  + +  
Sbjct: 525 QNINLSTHTMRLLFGSGLRIKAFQIVELLYDNGY-----MVDMEELIGFICQNGKLLDAQ 579

Query: 347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406
           +     +  G   D    N++ E L K KR  E    ++ M+  +     L+C   +   
Sbjct: 580 KMLSFCLEKGHNVDINVCNVVIEGLCKMKRPLEAFGLYY-MLVEKSNHQQLSCLEGLRTA 638

Query: 407 LDA 409
           L+A
Sbjct: 639 LEA 641


>gi|218184541|gb|EEC66968.1| hypothetical protein OsI_33625 [Oryza sativa Indica Group]
          Length = 1351

 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 109/459 (23%), Positives = 189/459 (41%), Gaps = 57/459 (12%)

Query: 82  DLVHEVLQLSYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWNAVRVM 139
           D++H +   S D P+ A++ FR A R  R+  +  + N M+D++  +GR   M     VM
Sbjct: 138 DVIHALR--SADGPAEALERFRSAARRPRVVHTTASCNYMLDLMRDHGRVGDMAEVFDVM 195

Query: 140 KEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198
           +   V  ++ TFA+IF      G    A ++  VM   G+  +    N L+  + +    
Sbjct: 196 QRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVKS-GF 254

Query: 199 TSRALEFLNRVKKIVDPDG-----DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH 253
              ALE    V K++  DG      ++++L+  + K  +VE       EM E     P +
Sbjct: 255 DREALE----VYKVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREM-EAHGVKP-N 308

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL-------------KFFSNALDILV 300
           V +Y   +  L + ++ DEA + L  M+ E C P +                S+A D+  
Sbjct: 309 VYSYTICIRVLGQARRFDEAYRILAEMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFW 368

Query: 301 KL----------------------NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
           K+                       +S   +++W+ M   G+N   N++ Y AVI  LC 
Sbjct: 369 KMKKSDQKPDRVTYITLLDKFADNGESQSVMEIWNAMKADGYN--DNVVAYTAVIDALCQ 426

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
              V      FD+M   G  P+  +YN +    +K  R  +  + F  M  +  +P    
Sbjct: 427 VGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKYMDIHGPKPNGYT 486

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
               I     + E   AI+ +  +   GI+P   + N +L GL   GRL   +R   E+ 
Sbjct: 487 HVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELK 546

Query: 459 NRRILIYEVTMHKLKKAFYNESR---SMRDIFDSLERRC 494
              +    +T   + K     S+   +++  +D +E  C
Sbjct: 547 AMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNC 585



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 162/354 (45%), Gaps = 11/354 (3%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G + + Y++ + + VLG+  RF++ +  +  M+ +G    + T   +    C AG+  +A
Sbjct: 304 GVKPNVYSYTICIRVLGQARRFDEAYRILAEMENEGCKPDVITHTVLIQVLCDAGRISDA 363

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD---SFAIL 223
              F  M     + D V   +LL        ++   +E  N +K   D   D   ++  +
Sbjct: 364 KDVFWKMKKSDQKPDRVTYITLLDKFA-DNGESQSVMEIWNAMK--ADGYNDNVVAYTAV 420

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           ++   + G V EA + F EM ++    PE   +Y + +   ++  +  +AL+  + M   
Sbjct: 421 IDALCQVGRVFEALEMFDEMKQK-GIVPEQ-YSYNSLISGFLKADRFGDALELFKYMDIH 478

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
              P        ++   K  +S  A+Q +++M   G  ++P+++  NAV+  L  +  + 
Sbjct: 479 GPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKG--IVPDVVAGNAVLFGLAKSGRLG 536

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
              R F ++   G  PD++TY M+ +C  K  +  E  K F++MI+N   P  L   + I
Sbjct: 537 MAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLVVNSLI 596

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
             L  A   + A +I+  + E  + P + + N LL GL   G++ +V    EEM
Sbjct: 597 DTLYKAGRGDEAWQIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEM 650



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 82/378 (21%), Positives = 166/378 (43%), Gaps = 19/378 (5%)

Query: 96  SSAVDFFRWAGRGQR------------LSPY--AWNLMVDVLGKNGRFEQMWNAVRVMKE 141
           +S +D    AGRG              L P    +N ++  LG+ G+ +++ + +  M  
Sbjct: 593 NSLIDTLYKAGRGDEAWQIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYH 652

Query: 142 DGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS 200
                +L T+ +I D  C  G  ++A+     M+  G   D+ + N+++  + ++E + +
Sbjct: 653 SNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEE-RYN 711

Query: 201 RALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF 260
            A     ++KK++ PD  +   +L  + K G ++EA     E   +     +    + + 
Sbjct: 712 EAFSIFCQMKKVLIPDYATLCTILPSFVKIGLMKEALHIIKEYFLQPGSKTDRSSCH-SL 770

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF 320
           +  +++    +++++F  ++          F    +  L K   +  A +L       G 
Sbjct: 771 MEGILKKAGTEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGV 830

Query: 321 NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEV 380
           +L      YN++I  L + + +D     F +M   G  PD  TYN++ + + K+ R+ E+
Sbjct: 831 SLKTG--SYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEM 888

Query: 381 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 440
            K   EM +  ++ T +   T I+ L+ +   E AI+++  ++  G  P   +   LL G
Sbjct: 889 LKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDG 948

Query: 441 LRNLGRLSDVRRFAEEML 458
           L   GR+ D      EML
Sbjct: 949 LLKAGRIEDAENLFNEML 966



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 90/385 (23%), Positives = 158/385 (41%), Gaps = 55/385 (14%)

Query: 81  PDLV-HEVL-QLSYDSP--SSAVD-FFRWAGRGQRLSPYAWNLMVDVLGKNGRFE---QM 132
           PD++ H VL Q+  D+   S A D F++     Q+     +  ++D    NG  +   ++
Sbjct: 342 PDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFADNGESQSVMEI 401

Query: 133 WNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
           WNA   MK DG   ++  + ++ D+ C  G+  EA+  FD M   G+  +  + NSL+S 
Sbjct: 402 WNA---MKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISG 458

Query: 192 ICRQE-------------------------------NQTSRALEFLNRVK----KIVDPD 216
             + +                                ++  +++ + R +    K + PD
Sbjct: 459 FLKADRFGDALELFKYMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPD 518

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
             +   +L G  K G +  A + F E+ +    +P+  + Y   +    +  + DEA+K 
Sbjct: 519 VVAGNAVLFGLAKSGRLGMAKRVFHEL-KAMGVSPD-TITYTMMIKCCSKASKFDEAVKI 576

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG-FNLMPNLIMYNAVIGL 335
              M   NC P +   ++ +D L K      A   W I   +   NL P    YN ++  
Sbjct: 577 FYDMIENNCVPDVLVVNSLIDTLYKAGRGDEA---WQIFYQLKEMNLEPTDGTYNTLLAG 633

Query: 336 LCNNDDVDNVFRFFDQMVFHGAFPDSL-TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
           L     V  V    ++M +H  +P +L TYN I +CL KN  V++     + M      P
Sbjct: 634 LGREGKVKEVMHLLEEM-YHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIP 692

Query: 395 TPLNCATAITMLLDADEPEIAIEIW 419
              +  T I  L+  +    A  I+
Sbjct: 693 DLSSYNTVIYGLVKEERYNEAFSIF 717



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 72/324 (22%), Positives = 129/324 (39%), Gaps = 54/324 (16%)

Query: 114  YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            + +NL++D +GK+ R E+M   ++V +E                               M
Sbjct: 870  FTYNLLLDAMGKSMRIEEM---LKVQEE-------------------------------M 895

Query: 174  SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
               G E   V  N+++S + +          + N + +   P   ++  LL+G  K G +
Sbjct: 896  HRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRI 955

Query: 234  EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV----DEALKFLRVMKGENCFPTL 289
            E+A   F EM+E          A  T    L+ G ++    ++     + M  +   P +
Sbjct: 956  EDAENLFNEMLEY------GCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDI 1009

Query: 290  KFFSNALDILVK---LNDS-THAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            K ++  +D L K   LND  T+  QL ++       L P+LI YN +I  L  +  ++  
Sbjct: 1010 KSYTIIIDTLCKAGQLNDGLTYFRQLLEM------GLEPDLITYNLLIDGLGKSKRLEEA 1063

Query: 346  FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
               F++M   G  P+  TYN +   L K  +  E  K + E++   W+P        I  
Sbjct: 1064 VSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRG 1123

Query: 406  LLDADEPEIAIEIWNYILENGILP 429
               +   + A   +  ++  G LP
Sbjct: 1124 YSVSGSTDSAYAAYGRMIVGGCLP 1147



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 130/285 (45%), Gaps = 6/285 (2%)

Query: 177  GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEE 235
            GV     + NSL+  +   EN    A      +K++   PD  ++ +LL+   K   +EE
Sbjct: 829  GVSLKTGSYNSLICGLV-DENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEE 887

Query: 236  ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
              K   EM  R  +   +V  Y T +  L++ +++++A+     +  +   PT   +   
Sbjct: 888  MLKVQEEM-HRKGYESTYV-TYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPL 945

Query: 296  LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
            LD L+K      A  L++ M+  G     N  +YN ++       + + V   F  MV  
Sbjct: 946  LDGLLKAGRIEDAENLFNEMLEYGCK--ANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQ 1003

Query: 356  GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 415
            G  PD  +Y +I + L K  ++++   +F ++++   +P  +     I  L  +   E A
Sbjct: 1004 GINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEA 1063

Query: 416  IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
            + ++N + + GI+P   + N L++ L   G+ ++  +  EE+L +
Sbjct: 1064 VSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTK 1108



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/279 (21%), Positives = 126/279 (45%), Gaps = 16/279 (5%)

Query: 107  RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDE 165
            +G   +   +N ++  L K+ R EQ  +    +   G    P T+  + D    AG+ ++
Sbjct: 898  KGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIED 957

Query: 166  AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
            A   F+ M  +G + +    N LL+      N       F + V + ++PD  S+ I+++
Sbjct: 958  AENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIID 1017

Query: 226  GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
               K G + +    F +++E     P+ ++ Y   +  L + K+++EA+     M+ +  
Sbjct: 1018 TLCKAGQLNDGLTYFRQLLE-MGLEPD-LITYNLLIDGLGKSKRLEEAVSLFNEMQKKGI 1075

Query: 286  FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
             P L  +++ +  L K   +  A ++++ ++  G+   PN+  YNA+I     +   D+ 
Sbjct: 1076 VPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWK--PNVFTYNALIRGYSVSGSTDSA 1133

Query: 346  FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
            +  + +M+  G  P+S T +           +HE+ K F
Sbjct: 1134 YAAYGRMIVGGCLPNSSTCH-----------IHELMKTF 1161


>gi|125541207|gb|EAY87602.1| hypothetical protein OsI_09013 [Oryza sativa Indica Group]
          Length = 555

 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 124/520 (23%), Positives = 211/520 (40%), Gaps = 41/520 (7%)

Query: 14  NKIIPSSSSTTTSPTSHNPHRP----------TRPRFPTHL-DAPYISSSARIICEIL-- 60
           N+  P  + T+  P     H P          T    PT+L D  + + S RI   ++  
Sbjct: 32  NRSSPRLNPTSVPPPPRQLHLPILQARRLCSTTHVVLPTNLQDERFAALSDRIYDAVIET 91

Query: 61  AHASSDDIESALACTGIIPTPDLVHEVL-QLSYDSPSSAVDFFRWAGR--GQRLSPYAWN 117
           A  SS+  E+AL   G   T  LV +VL +L YD    A  FF WA    G       +N
Sbjct: 92  AAGSSEGTEAALDALGAELTTPLVADVLHRLRYDE-KLAFRFFVWASHQGGYEHEAATYN 150

Query: 118 LMVDVLG----KNGRFEQMWNAVRVMKEDGVLSLPT--FASIFDSYCGAGKYDEAVMSFD 171
            ++D+L     K  +F  + + +  MK     S+P      I  +Y          ++  
Sbjct: 151 DVIDILSGTRYKARQFGVLCDVLDHMKRRRTRSVPVDDLLGILRAYTEKHLTHLRKLAKK 210

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
                    +  A+N LL A C+       A    +RVK+ +  + ++++IL  GW +  
Sbjct: 211 RRVRMRTPPETDALNVLLDAFCKS-GMVREAEAVFSRVKRKLLGNAETYSILFFGWCRAR 269

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF---PT 288
           + + A K   EM++  +  PE+   Y   + +      V EA      M+ E      PT
Sbjct: 270 DPKRAMKVLEEMIQ-MKHTPEN-FTYNAAIDSFCSAGLVSEARDLFEFMRTEGSTISSPT 327

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
            K +S  +  L K        +L   M   G   MP++  Y  +I  +   D +D  +  
Sbjct: 328 AKTYSIMIAALAKAGQMEECFELISEMRKCG--CMPDVSTYKDLIEGMLLVDKLDAAYCV 385

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
            D+M   G  PD +TYN   + L   ++  +  +    MI+   +P+       + M  +
Sbjct: 386 LDEMAKAGFPPDIVTYNCFLKVLCGLQKADDALELCERMIEAHCEPSVHTYNMLMVMFFE 445

Query: 409 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI---- 464
             EP+ AI IW  + + G      +   ++ GL + GR  D     +E++NR + +    
Sbjct: 446 MREPDRAINIWIEMDKRGCHRAVDTYETMIDGLFDSGRTEDATTLLDEVINRGMKLSYKK 505

Query: 465 YEVTMHKLKK-----AFYNESRSMRDIFD-SLERRCKTSQ 498
           ++  M +L       A +  S  MR  ++ ++ RR   +Q
Sbjct: 506 FDAIMLRLSAVGNLGAIHRLSEHMRRFYNVAMSRRFAITQ 545


>gi|356547426|ref|XP_003542113.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Glycine max]
          Length = 825

 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 92/406 (22%), Positives = 175/406 (43%), Gaps = 15/406 (3%)

Query: 47  PYISSSARII---CEILAHASSDDIESALACTGIIPTPDLVHEVL--QLSYDSPSSAVDF 101
           P + +   +I   C+     + D + + +A  G+     + + V+  +  Y   + A + 
Sbjct: 273 PTVETYGALINGFCKAGEFEAVDQLLTEMAARGLNMNVKVFNNVIDAEYKYGLVTEAAEM 332

Query: 102 FRWA---GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSY 157
            R     G G  ++ Y  N+M++   K GR E+    +   KE G+L +  ++  +  +Y
Sbjct: 333 LRRMAEMGCGPDITTY--NIMINFSCKGGRIEEADELLEKAKERGLLPNKFSYTPLMHAY 390

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG 217
           C  G Y +A      ++  G + D+V+  + +  +          +     ++K V PD 
Sbjct: 391 CKKGDYVKASGMLFRIAEIGEKSDLVSYGAFIHGVVVAGEIDVALMVREKMMEKGVFPDA 450

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
             + IL+ G  K+G +        EM++R    P+ V  + T +   IR  ++DEA+K  
Sbjct: 451 QIYNILMSGLCKKGRIPAMKLLLSEMLDR-NVQPD-VYVFATLIDGFIRNGELDEAIKIF 508

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337
           +V+  +   P +  ++  +    K    T A+   + M  +  +  P+   Y+ VI    
Sbjct: 509 KVIIRKGVDPGIVGYNAMIKGFCKFGKMTDALSCLNEMNSV--HHAPDEYTYSTVIDGYV 566

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
              D+ +  + F QM+ H   P+ +TY  +     K   +   EK F  M   +  P  +
Sbjct: 567 KQHDMSSALKMFGQMMKHKFKPNVITYTSLINGFCKKADMIRAEKVFSGMKSFDLVPNVV 626

Query: 398 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
              T +     A +PE A  I+  +L NG LP +A+ + L+ GL N
Sbjct: 627 TYTTLVGGFFKAGKPERATSIFELMLMNGCLPNDATFHYLINGLTN 672



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/356 (22%), Positives = 144/356 (40%), Gaps = 11/356 (3%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED-GVLSLPT---FASIFDSYCGAG 161
           G G  +  Y  ++MV  L   G+ E+     R++K   G   +P    +  I D YC  G
Sbjct: 198 GTGAVVDNYTTSIMVKGLCNLGKIEE---GRRLIKHRWGKCCVPHVVFYNMIIDGYCKKG 254

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221
               A  + + + M GV   V    +L++  C+     +          + ++ +   F 
Sbjct: 255 DLQCATRALNELKMKGVLPTVETYGALINGFCKAGEFEAVDQLLTEMAARGLNMNVKVFN 314

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            +++   K G V EA +    M E     P+ +  Y   +    +G +++EA + L   K
Sbjct: 315 NVIDAEYKYGLVTEAAEMLRRMAE-MGCGPD-ITTYNIMINFSCKGGRIEEADELLEKAK 372

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
                P    ++  +    K  D   A  +   +  IG     +L+ Y A I  +    +
Sbjct: 373 ERGLLPNKFSYTPLMHAYCKKGDYVKASGMLFRIAEIGEK--SDLVSYGAFIHGVVVAGE 430

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
           +D      ++M+  G FPD+  YN++   L K  R+  ++    EM+    QP     AT
Sbjct: 431 IDVALMVREKMMEKGVFPDAQIYNILMSGLCKKGRIPAMKLLLSEMLDRNVQPDVYVFAT 490

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
            I   +   E + AI+I+  I+  G+ P     N ++ G    G+++D      EM
Sbjct: 491 LIDGFIRNGELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFGKMTDALSCLNEM 546



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 72/343 (20%), Positives = 140/343 (40%), Gaps = 58/343 (16%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N+++  L K GR   M   +  M +  V   +  FA++ D +   G+ DEA+  F V+ 
Sbjct: 453 YNILMSGLCKKGRIPAMKLLLSEMLDRNVQPDVYVFATLIDGFIRNGELDEAIKIFKVII 512

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD-PDGDSFAILLEGWEKEGNV 233
             GV+  +V  N+++   C+    T  AL  LN +  +   PD  +++ +++G+ K+ ++
Sbjct: 513 RKGVDPGIVGYNAMIKGFCKFGKMTD-ALSCLNEMNSVHHAPDEYTYSTVIDGYVKQHDM 571

Query: 234 EEANKTFGEMVER----------------------------------FEWNPEHVLAYET 259
             A K FG+M++                                   F+  P +V+ Y T
Sbjct: 572 SSALKMFGQMMKHKFKPNVITYTSLINGFCKKADMIRAEKVFSGMKSFDLVP-NVVTYTT 630

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFP---TLKFFSNALD------ILV-----KLNDS 305
            +    +  + + A     +M    C P   T  +  N L       +L+     K N+ 
Sbjct: 631 LVGGFFKAGKPERATSIFELMLMNGCLPNDATFHYLINGLTNTATSPVLIEEKDSKENER 690

Query: 306 THAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYN 365
           +  +  + +M+  G++ +  +  YN+VI  LC +  VD       +M+  G   DS+ + 
Sbjct: 691 SLILDFFTMMLLDGWDQV--IAAYNSVIVCLCKHGTVDTAQLLLTKMLTKGFLIDSVCFT 748

Query: 366 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
            +   L    +  E    +  +I  +     L  A   ++ LD
Sbjct: 749 ALLHGLCHKGKSKE----WRNIISCDLNKIELQTAVKYSLTLD 787


>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
 gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 151/335 (45%), Gaps = 10/335 (2%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           ++ TF ++ +  C AG++ +A+  FD M   G + DV    ++++ +C+   +T+ A   
Sbjct: 160 TIITFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKM-GETAAAAGL 218

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           + ++ ++   PD  +++ L++   K+  V EA   F  M  + +     V++Y + +  L
Sbjct: 219 IKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYM--KAKGISPTVVSYTSLIQGL 276

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
               +  EA   L  M   N  P +  FS  +DI  K  +   A  +   M  +G    P
Sbjct: 277 CSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVE--P 334

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           N+I YN+++       +V    + FD M+  G  PD  +Y+++       KR+ E ++ F
Sbjct: 335 NVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLF 394

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
           +EMI     P  ++  T I       +   A E++  +  NG LP   + + LL G    
Sbjct: 395 NEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQ 454

Query: 445 GRLSDVRRFAEEM----LNRRILIYEVTMHKLKKA 475
           G L    R    M    L   +++Y + +  + K+
Sbjct: 455 GYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKS 489



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 148/340 (43%), Gaps = 8/340 (2%)

Query: 98  AVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           A+D F +  + + +SP   ++  ++  L    R+++    +  M    ++  + TF+ + 
Sbjct: 250 ALDIFSYM-KAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLI 308

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD 214
           D +C  G   EA      M+  GVE +V+  NSL+     Q         F   + +   
Sbjct: 309 DIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCK 368

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           PD  S++IL+ G+     ++EA + F EM+ +    P  V +Y T +    +  ++ EA 
Sbjct: 369 PDVFSYSILINGYCMVKRIDEAKQLFNEMIHQ-GLTPNTV-SYTTLIHAFCQLGKLREAR 426

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
           +  + M      P L  +S  L+   K      A +L+  M G    L PNL+MY  +I 
Sbjct: 427 ELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGT--YLKPNLVMYTILID 484

Query: 335 LLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
            +C + ++++  + F ++  HG  PD   Y  I   L K   + E  + F +M ++   P
Sbjct: 485 SMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPP 544

Query: 395 TPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 434
              +    I   L   +   A+++   + + G +  E + 
Sbjct: 545 NEFSYNVIIRGFLQHKDESRAVQLIGEMRDKGFVADEGTT 584



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/357 (23%), Positives = 153/357 (42%), Gaps = 8/357 (2%)

Query: 96  SSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASI 153
           + A++ F     RG +   Y +  +++ L K G        ++ M E G    + T++++
Sbjct: 178 AQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTL 237

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI- 212
            DS C     +EA+  F  M   G+   VV+  SL+  +C   ++   A   LN +  + 
Sbjct: 238 IDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLC-SFSRWKEASAMLNEMTSLN 296

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
           + PD  +F++L++ + KEGNV EA      M E     P +V+ Y + +       +V E
Sbjct: 297 IMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTE-MGVEP-NVITYNSLMHGYSLQMEVVE 354

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAV 332
           A K   VM    C P +  +S  ++    +     A QL++ M+  G  L PN + Y  +
Sbjct: 355 ARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQG--LTPNTVSYTTL 412

Query: 333 IGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 392
           I   C    +      F  M  +G  PD  TY+++ E   K   + +  + F  M     
Sbjct: 413 IHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYL 472

Query: 393 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 449
           +P  +     I  +  +     A ++++ +  +G+ P       ++ GL   G L +
Sbjct: 473 KPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDE 529



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/346 (21%), Positives = 148/346 (42%), Gaps = 21/346 (6%)

Query: 128 RFEQMWNAVRVMKE--DGVLSLP-------------TFASIFDSYCGAGKYDEAVMSFDV 172
           +F ++ +A+  M++  D V+SL              T   + + +C     D        
Sbjct: 92  QFNKLLSAIVRMRQYYDAVISLSKQMELAGLSPNTCTLNILINCFCLMQHVDLGFSVLAK 151

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAILLEGWEKEG 231
           +   G++  ++   +L++ +C+   + ++ALE F + V +   PD  ++  ++ G  K G
Sbjct: 152 VIKLGLQPTIITFTTLINGLCK-AGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMG 210

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
               A     +M E     P+ V+ Y T + +L + + V+EAL     MK +   PT+  
Sbjct: 211 ETAAAAGLIKKMGE-VGCQPD-VVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVS 268

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           +++ +  L   +    A  + + M  +  N+MP+++ ++ +I + C   +V         
Sbjct: 269 YTSLIQGLCSFSRWKEASAMLNEMTSL--NIMPDIVTFSLLIDIFCKEGNVLEAQGVLKT 326

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M   G  P+ +TYN +         V E  K F  MI    +P   + +  I        
Sbjct: 327 MTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKR 386

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
            + A +++N ++  G+ P   S   L+     LG+L + R   ++M
Sbjct: 387 IDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDM 432



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 98/253 (38%), Gaps = 11/253 (4%)

Query: 232 NVEEANKTFGEMVERFEWNP-EHVLAYETFLITLIRGKQV-DEALKFLRVMKGENCFPTL 289
           N+++A  +F  M+ R    P   ++ +   L  ++R +Q  D  +   + M+     P  
Sbjct: 70  NIDDALASFNHMLHR---KPLPCIIQFNKLLSAIVRMRQYYDAVISLSKQMELAGLSPN- 125

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVG--IGFNLMPNLIMYNAVIGLLCNNDDVDNVFR 347
              +  L+IL+        V L   ++   I   L P +I +  +I  LC   +      
Sbjct: 126 ---TCTLNILINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAGEFAQALE 182

Query: 348 FFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 407
            FD MV  G  PD  TY  I   L K            +M +   QP  +  +T I  L 
Sbjct: 183 LFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLC 242

Query: 408 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEV 467
                  A++I++Y+   GI P   S   L+ GL +  R  +      EM +  I+   V
Sbjct: 243 KDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIV 302

Query: 468 TMHKLKKAFYNES 480
           T   L   F  E 
Sbjct: 303 TFSLLIDIFCKEG 315


>gi|195655361|gb|ACG47148.1| ATP binding protein [Zea mays]
          Length = 551

 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 124/530 (23%), Positives = 214/530 (40%), Gaps = 56/530 (10%)

Query: 17  IPSSSSTTT-SPTSHNPHRPTRPR--------------------FPTHL-DAPYISSSAR 54
           +P+ ++T + SP S  P  PTR +                     PTHL D  + + S R
Sbjct: 20  LPTLAATHSHSPPSFRPLHPTRIQPLRFHLPNPPVRRLSSEHAILPTHLQDERFATLSDR 79

Query: 55  IICEILAHA--SSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQR 110
           I   ++     S++  E+AL   G   T  LV +VL         A  FF WA +  G  
Sbjct: 80  IYDAVIKTGTESNEGTEAALDALGAELTTPLVADVLHRLLYEEKLAFRFFAWASQQDGYS 139

Query: 111 LSPYAWNLMVDVLG----KNGRFEQMWNAVRVMKEDGVLSLPT--FASIFDSYCGAGKYD 164
             P  +N ++D+L     K+ +F  + N +  MK  G  S+P      I  +Y       
Sbjct: 140 HEPTTYNDIIDILSGTRYKSRQFGVLCNVLDHMKRHGSRSVPVEGLLEILRAYTEKHLTH 199

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
              ++           +  A+N LL A C+       A     RVK+ +  + ++++ L 
Sbjct: 200 MRKLAKKRRVRMRTPPETDALNVLLDAFCKC-GMVKEAEAVFGRVKRKLLGNAETYSTLF 258

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPE---HVLAYETFLITLIRGKQVDEALKFLRVMK 281
            GW +  + ++A K   EM++  +  PE   +V A E+F         V EA +    M+
Sbjct: 259 FGWCRARDPKKAMKVLEEMIQ-MKHTPESFTYVAAIESF----CSAGLVSEARELFEFMR 313

Query: 282 GENCF---PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            E      PT K +S  +  L K +      +L   M   G   MP++  Y  +I  +C 
Sbjct: 314 TEGLTVSSPTAKTYSIMIVALAKADRMEECFELLSDMRTCG--CMPDVTTYKDLIEGMCL 371

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
              +D  +R  D+M   G  PD +TYN     L   +   +  +    MI+   +P+   
Sbjct: 372 VGRLDAAYRVLDEMGRAGFPPDIVTYNCFLNVLCSLRNADDALELCERMIEAHCEPSVHT 431

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
               + M  +  E   A++IW  + + G      +   ++ GL + G         +E++
Sbjct: 432 YNMLMMMFFEMGEAHRALDIWLEMDKRGCQRAIDTYEIMIYGLFDCGETEYATALLDEVI 491

Query: 459 NRRILI----YEVTMHKLKK-----AFYNESRSMRDIFD-SLERRCKTSQ 498
           NR + +    ++  M +L       A +  S  MR  ++ ++ RR   +Q
Sbjct: 492 NRDMKLSYKKFDAIMLRLSAVGNLGAIHRLSEHMRKFYNVAMSRRFAITQ 541


>gi|296087909|emb|CBI35192.3| unnamed protein product [Vitis vinifera]
          Length = 1001

 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 132/276 (47%), Gaps = 5/276 (1%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           +  N +VD L K G   +  + V +M   GV  ++ T+ ++ D +C   + D AV  FD 
Sbjct: 221 FTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDT 280

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M       +V++ N+L++  C+ ++       F    ++ + P+  ++  L+ G    G 
Sbjct: 281 MVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGR 340

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +++A   F EMV R +  P+ ++ Y T    L + + +D+A+  L+ ++G N  P ++ +
Sbjct: 341 LQDAISLFHEMVARGQI-PD-LVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIY 398

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  LD + +  +   A  L+  +   G  L PN+  YN +I  LC    +    + F +M
Sbjct: 399 TTILDGMCRAGELEDARDLFSNLSSKG--LQPNVWTYNIMIHGLCKQGLLAEASKLFSEM 456

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
             +G  P+  TYN+I    ++N       +   EM+
Sbjct: 457 NKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEML 492



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 88/410 (21%), Positives = 168/410 (40%), Gaps = 42/410 (10%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y   ++++ L    R +  ++A+ +++K        TF ++    C  GK  EA+  FD 
Sbjct: 81  YTLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDK 140

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG------ 226
           M   G + +VV   +L++ +C+    T     F   + K + P+  ++  L+ G      
Sbjct: 141 MIGEGFQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCE 200

Query: 227 WE-----------------------------KEGNVEEANKTFGEMVER-FEWNPEHVLA 256
           W+                             KEG V EA+     M+ R  E N   V+ 
Sbjct: 201 WKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPN---VVT 257

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
           Y   +       +VD A+K    M  ++C   +  ++  ++   K+     A+ L++ M 
Sbjct: 258 YNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMS 317

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
                L PN + YN +I  LC+   + +    F +MV  G  PD +TY  + + L KN+ 
Sbjct: 318 RQ--ELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRH 375

Query: 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 436
           + +       +  + W P      T +  +  A E E A ++++ +   G+ P   + N 
Sbjct: 376 LDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNI 435

Query: 437 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDI 486
           ++ GL   G L++  +   EM        + T + + + F   + ++R I
Sbjct: 436 MIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTI 485



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 126/290 (43%), Gaps = 8/290 (2%)

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV-DPDGDSFAILLEGWEKEG 231
           M   G+  DV  +  +++++C   N+   A   L ++ K+   PD  +F  L+ G   EG
Sbjct: 71  MDSFGIPPDVYTLAIVINSLCHL-NRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEG 129

Query: 232 NVEEANKTFGEMV-ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
            + EA   F +M+ E F+ N   V+ Y T +  L + +QV EA      M  +   P + 
Sbjct: 130 KIGEALHLFDKMIGEGFQPN---VVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIV 186

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
            +++ +  L KL +  H   L + MV     +MP++   N V+  LC    V       D
Sbjct: 187 TYNSLIHGLCKLCEWKHVTTLMNEMV--DSKIMPDVFTLNTVVDALCKEGMVAEAHDVVD 244

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
            M+  G  P+ +TYN + +       V    K F  M+  +     ++  T I       
Sbjct: 245 MMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQ 304

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
             + A+ ++  +    + P   + N L+ GL ++GRL D      EM+ R
Sbjct: 305 SVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVAR 354



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 81/388 (20%), Positives = 163/388 (42%), Gaps = 13/388 (3%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSF 170
           S   +N ++  + K      + +  R M   G+   + T A + +S C   + D A  + 
Sbjct: 44  STVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSAL 103

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEK 229
             +   G + D     +L+  +C  E +   AL   ++ + +   P+  ++  L+ G  K
Sbjct: 104 AKILKLGHQPDATTFTTLIRGLC-VEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCK 162

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
           +  V EA   F EM+ +   +P +++ Y + +  L +  +       +  M      P +
Sbjct: 163 DRQVTEAFNIFSEMITK-GISP-NIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDV 220

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
              +  +D L K      A  + D+M+  G    PN++ YNA++   C  ++VD   + F
Sbjct: 221 FTLNTVVDALCKEGMVAEAHDVVDMMIHRGVE--PNVVTYNALMDGHCLRNEVDVAVKVF 278

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 409
           D MV      + ++YN +     K + V +    F EM + E  P  +   T I  L   
Sbjct: 279 DTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHV 338

Query: 410 DEPEIAIEIWNYILENGILP---LEASANELLVGLRNLGR-LSDVRRFAEEMLNRRILIY 465
              + AI +++ ++  G +P      + ++ L   R+L + ++ ++       +  I IY
Sbjct: 339 GRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIY 398

Query: 466 EVTMHKLKKAFYNESRSMRDIFDSLERR 493
              +  + +A   E    RD+F +L  +
Sbjct: 399 TTILDGMCRA--GELEDARDLFSNLSSK 424



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/246 (21%), Positives = 98/246 (39%), Gaps = 17/246 (6%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T   + +S+C   +   A      +   G + DVV   +L++ +C+              
Sbjct: 618 TLNILINSFCHLRRLGYAFSVLAKLLKLGFQPDVVTYGTLMNGLCKM------------- 664

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           + K + PD  ++  L+         +       EMV   +  P +V+ + T +  L +  
Sbjct: 665 ITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNS-KIMP-NVVVFSTVVDALCKEG 722

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
            +  A   + +M      P +  ++  +D     ++   AV+++D MV  G   +PN+  
Sbjct: 723 MIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKG--CVPNVRS 780

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           YN +I   C    +D      +QM   G   D++TYN +   L    R+      FHEM+
Sbjct: 781 YNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMV 840

Query: 389 KNEWQP 394
            +   P
Sbjct: 841 ASGQIP 846



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/263 (20%), Positives = 107/263 (40%), Gaps = 6/263 (2%)

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           ++EA  TF  M+ +    P   + +   L ++ + K     L   R M      P +   
Sbjct: 26  LDEALSTFNRMLHK--QPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTL 83

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  ++ L  LN    A      ++ +G    P+   +  +I  LC    +      FD+M
Sbjct: 84  AIVINSLCHLNRVDFAFSALAKILKLGHQ--PDATTFTTLIRGLCVEGKIGEALHLFDKM 141

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
           +  G  P+ +TY  +   L K+++V E    F EMI     P  +   + I  L    E 
Sbjct: 142 IGEGFQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEW 201

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
           +    + N ++++ I+P   + N ++  L   G +++     + M++R +    VT + L
Sbjct: 202 KHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNAL 261

Query: 473 --KKAFYNESRSMRDIFDSLERR 493
                  NE      +FD++  +
Sbjct: 262 MDGHCLRNEVDVAVKVFDTMVHK 284



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 98/240 (40%), Gaps = 4/240 (1%)

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
           ++ TF    +    +DEAL     M  +   P+   F+  L  + K    +  + L   M
Sbjct: 12  SHNTFHSKPLHFNTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQM 71

Query: 316 VGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 375
               F + P++     VI  LC+ + VD  F    +++  G  PD+ T+  +   L    
Sbjct: 72  DS--FGIPPDVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEG 129

Query: 376 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 435
           ++ E    F +MI   +QP  +   T I  L    +   A  I++ ++  GI P   + N
Sbjct: 130 KIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYN 189

Query: 436 ELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES--RSMRDIFDSLERR 493
            L+ GL  L     V     EM++ +I+    T++ +  A   E       D+ D +  R
Sbjct: 190 SLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHR 249



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 3/138 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N ++  L   GR +        M   G +  L T+  + D  C      EA++    +
Sbjct: 815 TYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAI 874

Query: 174 SMHGVEQDVVAVNSLLSAICRQ-ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
               ++ D++  N  +  +CR  E + +R L F N   K + PD  ++ I++ G  K G 
Sbjct: 875 EGSNLDADILVYNIAIDGMCRAGELEAARDL-FSNLSSKGLQPDVRTYNIMIHGLCKRGL 933

Query: 233 VEEANKTFGEMVERFEWN 250
           ++EANK F +M E   W+
Sbjct: 934 LDEANKLFRKMDENDIWS 951


>gi|18071401|gb|AAL58260.1|AC068923_2 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 627

 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 136/289 (47%), Gaps = 7/289 (2%)

Query: 109 QRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           QR+SP    +N ++  L K    ++    +  M + GV+    T+ SI   +C +G+  E
Sbjct: 110 QRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKE 169

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A++    M   GVE DVV  NSL+  +C+    T     F +  K+ + PD  ++  LL+
Sbjct: 170 AIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQ 229

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+  +G + E +     MV R   +P H + +   +    + ++V+EA+     M+ +  
Sbjct: 230 GYATKGALVEMHGLLDLMV-RNGIHPNHYV-FSILVCAYAKQEKVEEAMLVFSKMRQQGL 287

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P    +   +D+L K      A+  ++ M+  G  L P+ I+YN++I  LC  D  +  
Sbjct: 288 NPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEG--LRPDSIVYNSLIHSLCIFDKWEKA 345

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
              F +M+  G    ++ +N I +   K  RV E  K F  M++   +P
Sbjct: 346 EELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKP 394



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 69/319 (21%), Positives = 140/319 (43%), Gaps = 26/319 (8%)

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD----- 218
           ++A   FD +   G+  DV + N LL+ +C  EN++  ALE L+    + D  GD     
Sbjct: 34  EDARHVFDELLRRGIP-DVFSYNILLNGLC-DENRSQEALELLH---IMADDGGDCPPDV 88

Query: 219 -SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            S++ ++ G+ KEG++++       + +R   N   V+ Y + +  L + + VD+A++ L
Sbjct: 89  VSYSTVINGFFKEGDLDKM------LDQRISPN---VVTYNSIIAALCKAQTVDKAMEVL 139

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337
             M      P    +++ +           A+     M   G    P+++ YN+++  LC
Sbjct: 140 TTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVE--PDVVTYNSLMDYLC 197

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
            N       + FD M   G  PD  TY  + +       + E+      M++N   P   
Sbjct: 198 KNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHY 257

Query: 398 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
             +  +      ++ E A+ +++ + + G+ P   +   ++  L   GR+ D   + E+M
Sbjct: 258 VFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQM 317

Query: 458 LNRRI----LIYEVTMHKL 472
           ++  +    ++Y   +H L
Sbjct: 318 IDEGLRPDSIVYNSLIHSL 336



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 70/318 (22%), Positives = 142/318 (44%), Gaps = 16/318 (5%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSF 170
           +++N++++ L    R ++    + +M +DG    P   +++++ + +   G  D+     
Sbjct: 52  FSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDK----- 106

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEK 229
             M    +  +VV  NS+++A+C+ +    +A+E L   VK  V PD  ++  ++ G+  
Sbjct: 107 --MLDQRISPNVVTYNSIIAALCKAQT-VDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCS 163

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
            G  +EA     +M  R +     V+ Y + +  L +  +  EA K    M      P +
Sbjct: 164 SGQPKEAIVFLKKM--RSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDI 221

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
             +   L              L D+MV  G +  PN  +++ ++      + V+     F
Sbjct: 222 TTYGTLLQGYATKGALVEMHGLLDLMVRNGIH--PNHYVFSILVCAYAKQEKVEEAMLVF 279

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 409
            +M   G  P+++TY  + + L K+ RV +   +F +MI    +P  +   + I  L   
Sbjct: 280 SKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIF 339

Query: 410 DEPEIAIEIWNYILENGI 427
           D+ E A E++  +L+ GI
Sbjct: 340 DKWEKAEELFLEMLDRGI 357



 Score = 43.5 bits (101), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 87/408 (21%), Positives = 147/408 (36%), Gaps = 64/408 (15%)

Query: 59  ILAHASSDDIESALAC------TGIIP---TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQ 109
           + A+A  + +E A+         G+ P   T   V +VL  S     + + F +    G 
Sbjct: 263 VCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGL 322

Query: 110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVM 168
           R     +N ++  L    ++E+       M + G+ LS   F SI DS+C  G+  E+  
Sbjct: 323 RPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGK 382

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
            FD+M   GV+ D++ +   L +  R  +           +    D             E
Sbjct: 383 LFDLMVRIGVKPDIITLGRFLGSARRDYSLFVNIYFIFTNMSNTGDK------------E 430

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           KE  V   N   G         P  +  Y   L  L + K  D+AL+  + +    C   
Sbjct: 431 KETPV---NTNGGNTASNSSGGP-FLGTYNIILHGLCKNKLTDDALRMFQNL----CLMD 482

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
           LK  +   +I++            D ++ +G                   ND+  ++F  
Sbjct: 483 LKLEARTFNIMI------------DALLKVG------------------RNDEAKDLFVA 512

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
           F     +G  P+  TY ++ E +I    + E+++ F  M  N            +  LL 
Sbjct: 513 FSS---NGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQ 569

Query: 409 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 456
             E   A    + I E     LEAS   L + L + G+  +   F  E
Sbjct: 570 RGEITRAGTYLSMIDEKH-FSLEASTASLFIDLLSGGKYQEYHIFLPE 616


>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
 gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
          Length = 862

 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 152/353 (43%), Gaps = 7/353 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G +L    ++ ++D L K    ++    ++ M + GV   + T+ +I D  C A   D 
Sbjct: 228 KGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDR 287

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILL 224
           A      M   GV+ DVV  N+++  +C+ +    RA   L   + K V PD  ++  L+
Sbjct: 288 AEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQ-AVDRADGVLQHMIDKDVKPDIQTYNCLI 346

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G+   G  +E  +   EM  R   +P+ V+ Y   L  L +  +  EA K    M  + 
Sbjct: 347 HGYLSTGEWKEVVRRLEEMYAR-GLDPD-VVTYSLLLDYLCKNGKCTEARKIFYCMIRKG 404

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
             P +  +   L              L D+MV  G +  PN  ++N V+        +D 
Sbjct: 405 IKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGIS--PNNYIFNIVLCAYAKKAMIDE 462

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
               F +M  HG  PD +TY ++ + L K  RV +    F++MI +   P  +   + + 
Sbjct: 463 AMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVY 522

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
            L   D  E A E++  + + G+ P     N ++  L N G++   +R  + M
Sbjct: 523 GLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSM 575



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 139/322 (43%), Gaps = 16/322 (4%)

Query: 81  PDLVHEVLQLSYDSPSSAVD-----FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNA 135
           PD+V   L L Y   +         F+    +G + +   + +++      G    + + 
Sbjct: 372 PDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDL 431

Query: 136 VRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194
           + +M  +G+  +   F  +  +Y      DEA+  F  MS HG+  DVV    L+ A+C+
Sbjct: 432 LDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCK 491

Query: 195 QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE-- 252
                   L+F   +   V P+   F  L+ G       E+A + F EM     W+    
Sbjct: 492 LGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEM-----WDQGVR 546

Query: 253 -HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
            +V+ + T +  L    QV  A + +  M+     P +  ++  +        +  A QL
Sbjct: 547 PNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQL 606

Query: 312 WDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECL 371
            D+MV +G  L P+LI Y+ ++   C    +DN +  F +M+  G  P ++TY+ I + L
Sbjct: 607 LDVMVSVG--LKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGL 664

Query: 372 IKNKRVHEVEKFFHEMIKNEWQ 393
              +R  E ++ +  MIK+  Q
Sbjct: 665 FHTRRFSEAKELYLNMIKSGQQ 686



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 82/371 (22%), Positives = 153/371 (41%), Gaps = 14/371 (3%)

Query: 121 DVLGKNGRFEQMWNAVRVMKEDGVLS----------LPTFASIFDSYCGAGKYDEAVMSF 170
           DV+  N   + +  A  V + DGVL           + T+  +   Y   G++ E V   
Sbjct: 303 DVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRL 362

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
           + M   G++ DVV  + LL  +C+    T     F   ++K + P+   + ILL G+   
Sbjct: 363 EEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAAR 422

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           G + +       MV     +P + + +   L    +   +DEA+     M      P + 
Sbjct: 423 GAIADLTDLLDLMVAN-GISPNNYI-FNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVV 480

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
            +   +D L KL     AV  ++ M+  G  + PN +++N+++  LC  D  +     F 
Sbjct: 481 TYGILIDALCKLGRVDDAVLKFNQMINDG--VTPNSVVFNSLVYGLCTVDRWEKAEELFF 538

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
           +M   G  P+ + +N I   L    +V   ++    M +   +P  ++  T I     A 
Sbjct: 539 EMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAG 598

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 470
             + A ++ + ++  G+ P   S + LL G    GR+ +      EML + +    VT  
Sbjct: 599 RTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYS 658

Query: 471 KLKKAFYNESR 481
            + +  ++  R
Sbjct: 659 TILQGLFHTRR 669



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 125/291 (42%), Gaps = 10/291 (3%)

Query: 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSR--ALEFLNRVKKI---- 212
           G+   D+A+  FD +  H     V A N LL+ + R    ++   A+   NR+ +     
Sbjct: 26  GSLGIDDALKLFDELLPHARPASVRAFNHLLNVVARARCSSTSELAVSLFNRMARACSNK 85

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
           V PD  +++IL   + + G +E     FG ++ +  W    V+  +  L  L   K+VDE
Sbjct: 86  VRPDLCTYSILTGCFCRLGRIEHGFAAFG-LILKTGWRVNEVVINQ-LLNGLCDAKRVDE 143

Query: 273 ALK-FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV-GIGFNLMPNLIMYN 330
           A+   LR M    C P +   +  L  L        A++L   M    G N  PN++ YN
Sbjct: 144 AMDILLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYN 203

Query: 331 AVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 390
            +I  LC    VD        M+  G   D +TY+ I + L K + V   E     MI  
Sbjct: 204 TIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDK 263

Query: 391 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 441
             +P  +   T I  L  A   + A  +  ++++ G+ P   + N ++ GL
Sbjct: 264 GVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGL 314



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 91/420 (21%), Positives = 166/420 (39%), Gaps = 47/420 (11%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDG----VLSLPTFASIFDSYCGAGKYDEAVMSF 170
           + N ++  L    R E+    +  M EDG      ++ T+ +I D  C A   D A    
Sbjct: 163 SCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIIDGLCKAQAVDRAEGVL 222

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEK 229
             M   GV+ DVV  ++++  +C+ +    RA   L   + K V PD  ++  +++G  K
Sbjct: 223 QHMIDKGVKLDVVTYSTIIDGLCKAQ-AVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCK 281

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM--------- 280
              V+ A      M+++    P+ V+ Y T +  L + + VD A   L+ M         
Sbjct: 282 AQAVDRAEGVLQHMIDK-GVKPD-VVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDI 339

Query: 281 KGENCF--------------------------PTLKFFSNALDILVKLNDSTHAVQLWDI 314
           +  NC                           P +  +S  LD L K    T A +++  
Sbjct: 340 QTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYC 399

Query: 315 MVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN 374
           M+  G    PN+ +Y  ++        + ++    D MV +G  P++  +N++     K 
Sbjct: 400 MIRKGIK--PNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKK 457

Query: 375 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 434
             + E    F  M ++   P  +     I  L      + A+  +N ++ +G+ P     
Sbjct: 458 AMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVF 517

Query: 435 NELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSM--RDIFDSLER 492
           N L+ GL  + R         EM ++ +    V  + +     NE + M  + + DS+ER
Sbjct: 518 NSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMER 577



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 143/351 (40%), Gaps = 13/351 (3%)

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206
           L T++ +   +C  G+ +    +F ++   G   + V +N LL+ +C  +         L
Sbjct: 90  LCTYSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVINQLLNGLCDAKRVDEAMDILL 149

Query: 207 NRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN-PEHVLAYETFLITL 264
            R+ +    P+  S   LL+G   E  VEEA +    M E    N   +V+ Y T +  L
Sbjct: 150 RRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIIDGL 209

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
            + + VD A   L+ M  +     +  +S  +D L K      A  +   M+  G    P
Sbjct: 210 CKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVK--P 267

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           +++ YN +I  LC    VD        M+  G  PD +TYN I + L K + V   +   
Sbjct: 268 DVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVL 327

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
             MI  + +P        I   L   E +  +     +   G+ P   + + LL  L   
Sbjct: 328 QHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKN 387

Query: 445 GRLSDVRRFAEEMLNRRI----LIYEVTMHKLKKAFYNESRSMRDIFDSLE 491
           G+ ++ R+    M+ + I     IY + +H      Y    ++ D+ D L+
Sbjct: 388 GKCTEARKIFYCMIRKGIKPNVTIYGILLHG-----YAARGAIADLTDLLD 433



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 134/295 (45%), Gaps = 19/295 (6%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           FF    +G R +   +N ++  L   G+       +  M+  GV  ++ ++ ++   +C 
Sbjct: 537 FFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCL 596

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
           AG+ DEA    DVM   G++ D+++ ++LL   C+     +    F   ++K V P   +
Sbjct: 597 AGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVT 656

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERF-EWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++ +L+G        EA + +  M++   +W+   +  Y   L  L +   VDEA K  +
Sbjct: 657 YSTILQGLFHTRRFSEAKELYLNMIKSGQQWD---IYTYNIILNGLCKTNCVDEAFKIFQ 713

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI----- 333
            +  ++  P +  F+  +D+L K      A+ L+  +   G  L+PN++ Y  ++     
Sbjct: 714 SLCSKDLRPNIITFTIMIDVLFKGGRKKDAMDLFASIPSHG--LVPNVVTYCIMMKNIIQ 771

Query: 334 -GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            GLL   D+ DN+F   ++    G  PDS+  N I   L+    +     +  ++
Sbjct: 772 EGLL---DEFDNLFLAMEK---SGCTPDSVMLNAIIRSLLGRGEIMRAGAYLSKI 820



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/323 (21%), Positives = 136/323 (42%), Gaps = 7/323 (2%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
            RG       ++L++D L KNG+  +       M   G+  ++  +  +   Y   G   
Sbjct: 367 ARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIA 426

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAIL 223
           +     D+M  +G+  +    N +L A  ++      A+   +R+ +  + PD  ++ IL
Sbjct: 427 DLTDLLDLMVANGISPNNYIFNIVLCAYAKKA-MIDEAMHIFSRMSQHGLSPDVVTYGIL 485

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           ++   K G V++A   F +M+      P  V+ + + +  L    + ++A +    M  +
Sbjct: 486 IDALCKLGRVDDAVLKFNQMIND-GVTPNSVV-FNSLVYGLCTVDRWEKAEELFFEMWDQ 543

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
              P + FF+  +  L        A +L D M  +G    PN+I YN +IG  C     D
Sbjct: 544 GVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVR--PNVISYNTLIGGHCLAGRTD 601

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
              +  D MV  G  PD ++Y+ +     K  R+      F EM++    P  +  +T +
Sbjct: 602 EAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTIL 661

Query: 404 TMLLDADEPEIAIEIWNYILENG 426
             L        A E++  ++++G
Sbjct: 662 QGLFHTRRFSEAKELYLNMIKSG 684



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 81/351 (23%), Positives = 147/351 (41%), Gaps = 15/351 (4%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F R +  G       + +++D L K GR +        M  DGV  +   F S+    C 
Sbjct: 467 FSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCT 526

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGD 218
             ++++A   F  M   GV  +VV  N+++  +C  E Q   A   ++ ++++ V P+  
Sbjct: 527 VDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLC-NEGQVMVAQRLIDSMERVGVRPNVI 585

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           S+  L+ G    G  +EA +    MV      P+ +++Y+T L    +  ++D A    R
Sbjct: 586 SYNTLIGGHCLAGRTDEAAQLLDVMVS-VGLKPD-LISYDTLLRGYCKTGRIDNAYCLFR 643

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            M  +   P    +S  L  L      + A +L+  M+  G     ++  YN ++  LC 
Sbjct: 644 EMLRKGVTPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSGQQW--DIYTYNIILNGLCK 701

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
            + VD  F+ F  +      P+ +T+ ++ + L K  R  +    F  +  +   P   N
Sbjct: 702 TNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLFKGGRKKDAMDLFASIPSHGLVP---N 758

Query: 399 CATAITMLLDADEPEIAIEIWNYIL---ENGILPLEASANELLVGLRNLGR 446
             T   M+ +  +  +  E  N  L   ++G  P     N ++  L  LGR
Sbjct: 759 VVTYCIMMKNIIQEGLLDEFDNLFLAMEKSGCTPDSVMLNAIIRSL--LGR 807


>gi|302820627|ref|XP_002991980.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
 gi|300140222|gb|EFJ06948.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
          Length = 509

 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 91/390 (23%), Positives = 168/390 (43%), Gaps = 11/390 (2%)

Query: 110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVM 168
           R   + +  ++    K  +  Q  N +  MK  G+  ++ TF S+    C     D+A+ 
Sbjct: 49  RPDDFTYGTLIRGFCKAEQIPQAVNLLGEMKAAGITPTIVTFGSLIRKLCELNFTDKALQ 108

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
            F  M    V+ D      ++  +C+       A  F   V+    PD  ++ +L+    
Sbjct: 109 IFHQMIDMKVKPDAFLYTVVIGHLCKINKLDLAASYFERMVQSGCLPDKVTYTVLVHSLF 168

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           K    E+ ++ F EM+ +   +PE ++ Y T +    +  ++D+AL  +R +KG    P+
Sbjct: 169 KACKWEQGHQIFEEMLSKGH-SPE-LVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPS 226

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
              +S  +D L K +    A +L+++  G     + ++I+Y + I  LC    +D     
Sbjct: 227 GSLYSTLIDGLCKHDRHDEARELFEMAAGD----VQDVIVYTSFISGLCKAGKLDEAKAV 282

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
             +M+  G  PD ++YN+I   L K+ RV E ++   + ++ +  P    C   +  L  
Sbjct: 283 HVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCK 342

Query: 409 ADEPEIAIEIWNYILENG-ILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEV 467
           +   E A  I   +LE G   P   + + ++ GL    RL D     ++M     +   V
Sbjct: 343 SRRVEEACVILERMLETGDRAPSVVTYSAVIDGLCKADRLDDAYVVLQKMRRAGCVPDVV 402

Query: 468 TMHKLKKAFYNESR--SMRDIFDSL-ERRC 494
           T   +  AF    R    R++F  + ER C
Sbjct: 403 TYTAIIDAFCKVGRLDEARELFQRMHERGC 432



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 114/256 (44%), Gaps = 8/256 (3%)

Query: 223 LLEGWEKEGNVEEANKTFG-EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           LLE +  +G   EA + F  E+V  F  +      Y T +    + +Q+ +A+  L  MK
Sbjct: 23  LLEVFVNDGCHREAYRVFKDELVTLFRPDD---FTYGTLIRGFCKAEQIPQAVNLLGEMK 79

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
                PT+  F + +  L +LN +  A+Q++  M  I   + P+  +Y  VIG LC  + 
Sbjct: 80  AAGITPTIVTFGSLIRKLCELNFTDKALQIFHQM--IDMKVKPDAFLYTVVIGHLCKINK 137

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
           +D    +F++MV  G  PD +TY ++   L K  +  +  + F EM+     P  +  AT
Sbjct: 138 LDLAASYFERMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYAT 197

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN-- 459
            +     A   + A+ +   +   G  P  +  + L+ GL    R  + R   E      
Sbjct: 198 VVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHDEARELFEMAAGDV 257

Query: 460 RRILIYEVTMHKLKKA 475
           + +++Y   +  L KA
Sbjct: 258 QDVIVYTSFISGLCKA 273



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 140/321 (43%), Gaps = 13/321 (4%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYD 164
           G    L  YA   +V+   K GR +Q  + +R +K  G   S   ++++ D  C   ++D
Sbjct: 187 GHSPELVTYAT--VVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHD 244

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
           EA   F++ +  G  QDV+   S +S +C+           +  ++    PD  S+ +++
Sbjct: 245 EARELFEMAA--GDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVII 302

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL-RVMKGE 283
               K+  V EA +   + +ER +  P  V      +  L + ++V+EA   L R+++  
Sbjct: 303 YSLCKDNRVSEAKELMDQAMER-KCMP-GVPVCTVLVDGLCKSRRVEEACVILERMLETG 360

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
           +  P++  +S  +D L K +    A  +   M   G   +P+++ Y A+I   C    +D
Sbjct: 361 DRAPSVVTYSAVIDGLCKADRLDDAYVVLQKMRRAG--CVPDVVTYTAIIDAFCKVGRLD 418

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
                F +M   G   D + YN++     +  +V E      EM     QP  ++ +T +
Sbjct: 419 EARELFQRMHERGCALDVVAYNILIRGYCRAAKVDEAIAMIEEMAGRGIQPNVVSLSTIV 478

Query: 404 TMLLD---ADEPEIAIEIWNY 421
             L      +E  + +E  N+
Sbjct: 479 DGLCKESRVEEARLLMEKMNF 499



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 82/414 (19%), Positives = 168/414 (40%), Gaps = 15/414 (3%)

Query: 75  TGIIPT----PDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFE 130
            GI PT      L+ ++ +L++   +  + F +      +   + + +++  L K  + +
Sbjct: 81  AGITPTIVTFGSLIRKLCELNFTDKALQI-FHQMIDMKVKPDAFLYTVVIGHLCKINKLD 139

Query: 131 QMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLL 189
              +    M + G L    T+  +  S   A K+++    F+ M   G   ++V   +++
Sbjct: 140 LAASYFERMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYATVV 199

Query: 190 SAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFE 248
           +  C+   +  +AL  + R+K     P G  ++ L++G  K    +EA + F    E   
Sbjct: 200 NGYCKA-GRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHDEARELF----EMAA 254

Query: 249 WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHA 308
            + + V+ Y +F+  L +  ++DEA      M    C P    ++  +  L K N  + A
Sbjct: 255 GDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEA 314

Query: 309 VQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG-AFPDSLTYNMI 367
            +L D    +    MP + +   ++  LC +  V+      ++M+  G   P  +TY+ +
Sbjct: 315 KELMD--QAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLETGDRAPSVVTYSAV 372

Query: 368 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 427
            + L K  R+ +      +M +    P  +     I         + A E++  + E G 
Sbjct: 373 IDGLCKADRLDDAYVVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGC 432

Query: 428 LPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
                + N L+ G     ++ +     EEM  R I    V++  +      ESR
Sbjct: 433 ALDVVAYNILIRGYCRAAKVDEAIAMIEEMAGRGIQPNVVSLSTIVDGLCKESR 486



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 78/181 (43%), Gaps = 4/181 (2%)

Query: 74  CTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL-SPYAWNLMVDVLGKNGRFEQM 132
           C   +P   ++ + L  S     + V   R    G R  S   ++ ++D L K  R +  
Sbjct: 326 CMPGVPVCTVLVDGLCKSRRVEEACVILERMLETGDRAPSVVTYSAVIDGLCKADRLDDA 385

Query: 133 WNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
           +  ++ M+  G +  + T+ +I D++C  G+ DEA   F  M   G   DVVA N L+  
Sbjct: 386 YVVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCALDVVAYNILIRG 445

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
            CR                + + P+  S + +++G  KE  VEEA     +M   FE  P
Sbjct: 446 YCRAAKVDEAIAMIEEMAGRGIQPNVVSLSTIVDGLCKESRVEEARLLMEKM--NFESLP 503

Query: 252 E 252
           +
Sbjct: 504 D 504


>gi|302780004|ref|XP_002971777.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
 gi|300160909|gb|EFJ27526.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
          Length = 556

 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 98/388 (25%), Positives = 177/388 (45%), Gaps = 22/388 (5%)

Query: 107 RGQRLSP--YAWNLMVDV-LGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGK 162
           RG + +P    +N +++  + K+G  E+    +  MK  G    + T+ SI  + C AG+
Sbjct: 161 RGGKSAPDIVTYNTLINAGICKDGDVEEALEILDGMKLAGPAPDVITYNSIIHALCVAGR 220

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFA 221
             EA      MS      D+V  N+LL   C+      RALE L  + ++ + PD  ++ 
Sbjct: 221 VVEAAEILKTMS---CSPDLVTFNTLLDGFCKA-GMLPRALEVLEEMCRENILPDVITYT 276

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           IL+ G  + G V+ A     E+V R  + P+ V+AY + +  L +  +++EA K ++ M 
Sbjct: 277 ILVNGLCRVGQVQVAFYLLEEIV-RQGYIPD-VIAYTSLVDGLCKSGEIEEAHKLVKEMS 334

Query: 282 GE---------NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAV 332
                      N  P L  ++  L  L+K    + AV L   +V  G+  +P+++ YN +
Sbjct: 335 AREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGY--VPDVVTYNTL 392

Query: 333 IGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 392
           I  LC  + V       D+M   G FP+ +T   +   L +  RV +      EM +   
Sbjct: 393 IDGLCKANRVREACDLADEMASLGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRH 452

Query: 393 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 452
            P  +   + I  L  +D  + A  + + +   G+   + +  +L+V + + GR+++   
Sbjct: 453 APNVVVYTSLIDGLCKSDRMDDACVVLDAMRGQGVALDDFAYRKLIVSMIHGGRVAEAMA 512

Query: 453 FAEEMLNRRILIYEVTMHKLKKAFYNES 480
             +EM+ R  L    T   L++A  + S
Sbjct: 513 MYDEMVARGFLPDGSTSKTLEEAAMSNS 540



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 93/420 (22%), Positives = 168/420 (40%), Gaps = 47/420 (11%)

Query: 95  PSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFA 151
           P  A+ FF WAG   G +   +++N ++D+L K+G   +     + +   G   +L TF 
Sbjct: 7   PDLAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTFK 66

Query: 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK 211
            +    C AG+   A+     +    V  DV   N L+  + +  N       F N    
Sbjct: 67  ILIRGNCKAGQATRALEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESS 126

Query: 212 IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFL-ITLIRGKQV 270
            V+PD  ++  ++ G  K GN+E+A +   EM+ R   +   ++ Y T +   + +   V
Sbjct: 127 RVNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINAGICKDGDV 186

Query: 271 DEALKFL--------------------------------RVMKGENCFPTLKFFSNALDI 298
           +EAL+ L                                 ++K  +C P L  F+  LD 
Sbjct: 187 EEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEILKTMSCSPDLVTFNTLLDG 246

Query: 299 LVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAF 358
             K      A+++ + M     N++P++I Y  ++  LC    V   F   +++V  G  
Sbjct: 247 FCKAGMLPRALEVLEEMC--RENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYI 304

Query: 359 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE---------WQPTPLNCATAITMLLDA 409
           PD + Y  + + L K+  + E  K   EM   E           P        +  L+  
Sbjct: 305 PDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFTYNIVLGGLIKD 364

Query: 410 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTM 469
                A+ + + ++  G +P   + N L+ GL    R+ +    A+EM +      +VT+
Sbjct: 365 GSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASLGCFPNDVTL 424


>gi|357485117|ref|XP_003612846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514181|gb|AES95804.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 892

 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 81/379 (21%), Positives = 155/379 (40%), Gaps = 38/379 (10%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y++++++D   + GR +Q     + M+  G+L ++ +++ + D +C  G+ D+A+  F+ 
Sbjct: 316 YSYSILIDGFCRKGRVDQASEVFKEMRNSGILPNIYSYSILIDGFCKEGRVDKALEVFEE 375

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEG 231
           M   G+  DV + + L+   CR+ +  S A++F   +      P   ++  L++G+ K  
Sbjct: 376 MKNSGILPDVYSYSILIDGFCRKGDMDS-AIKFWEEMTSNNFSPSAFNYCSLIKGYYKSK 434

Query: 232 NVEEANKTFGEM-------------------------------VERFEWNPEHV--LAYE 258
               A K F  M                                E+F+ N  H    +Y 
Sbjct: 435 QFANALKEFRIMQKLGMWPDTIACNHILSIYCRKPDFNKALALSEKFQENGVHFNPYSYN 494

Query: 259 TFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI 318
            F+  + RG   ++AL+ L VM   N  P +  +S  +    K  +S  AV L+  M  +
Sbjct: 495 EFIHRICRGSVPEKALQLLPVMLKRNVLPDVVNYSTLISCFAKRLNSEKAVMLFIKMTKV 554

Query: 319 GFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVH 378
           G     N+  Y  +I L  ++  +D  +R F  M     +PD + Y  +         + 
Sbjct: 555 GITF--NVKTYTILINLFISDCKMDVAYRLFKGMKESRVYPDQIAYTSLVAGFCNTGEMT 612

Query: 379 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 438
                F EM +    P  +     I   L  ++   A +++  + E G+ P +     L+
Sbjct: 613 RARALFDEMSREGCSPNVVTYTCFINEYLKLNKNNQAHKLYEKMKERGVYPDQILYTMLI 672

Query: 439 VGLRNLGRLSDVRRFAEEM 457
               N G ++      +EM
Sbjct: 673 AAFCNTGEMNRAEALFDEM 691



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/332 (18%), Positives = 138/332 (41%), Gaps = 9/332 (2%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSF 170
           S   +++++ V   N   E         K+DG+ L++ +   +        + D   + F
Sbjct: 135 SNVVFDMLIKVFASNSMLEHANYVFVRAKDDGIELNIMSCNFLLKCLVEDNRVDGVRLLF 194

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQT---SRALEFLNRVKKIVD-PDGDSFAILLEG 226
           +V+   G   ++     +++  CR    +    RA E L ++    + P+  ++   ++G
Sbjct: 195 EVLIKFGPRPNIHTYTIMMNFFCRGVGCSVDIRRASEILGKIYMSGETPNVVTYGTYIKG 254

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
             K G    A +    +  + +  P +   +   +  L +G  +DEA +  + MK     
Sbjct: 255 LCKVGLFGVAWRLIQNLCRKNQ--PLNNHCFNAVIYGLCQGGILDEASEVFKEMKNSGIL 312

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346
           P +  +S  +D   +      A +++  M   G  ++PN+  Y+ +I   C    VD   
Sbjct: 313 PDVYSYSILIDGFCRKGRVDQASEVFKEMRNSG--ILPNIYSYSILIDGFCKEGRVDKAL 370

Query: 347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406
             F++M   G  PD  +Y+++ +   +   +    KF+ EM  N + P+  N  + I   
Sbjct: 371 EVFEEMKNSGILPDVYSYSILIDGFCRKGDMDSAIKFWEEMTSNNFSPSAFNYCSLIKGY 430

Query: 407 LDADEPEIAIEIWNYILENGILPLEASANELL 438
             + +   A++ +  + + G+ P   + N +L
Sbjct: 431 YKSKQFANALKEFRIMQKLGMWPDTIACNHIL 462



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 68/343 (19%), Positives = 147/343 (42%), Gaps = 9/343 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYC- 158
           F R    G  L+  + N ++  L ++ R + +     V+ + G   ++ T+  + + +C 
Sbjct: 159 FVRAKDDGIELNIMSCNFLLKCLVEDNRVDGVRLLFEVLIKFGPRPNIHTYTIMMNFFCR 218

Query: 159 GAGKYDEAVMSFDVMS---MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDP 215
           G G   +   + +++    M G   +VV   + +  +C+            N  +K    
Sbjct: 219 GVGCSVDIRRASEILGKIYMSGETPNVVTYGTYIKGLCKVGLFGVAWRLIQNLCRKNQPL 278

Query: 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK 275
           +   F  ++ G  + G ++EA++ F EM +     P+ V +Y   +    R  +VD+A +
Sbjct: 279 NNHCFNAVIYGLCQGGILDEASEVFKEM-KNSGILPD-VYSYSILIDGFCRKGRVDQASE 336

Query: 276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGL 335
             + M+     P +  +S  +D   K      A+++++ M   G  ++P++  Y+ +I  
Sbjct: 337 VFKEMRNSGILPNIYSYSILIDGFCKEGRVDKALEVFEEMKNSG--ILPDVYSYSILIDG 394

Query: 336 LCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 395
            C   D+D+  +F+++M  +   P +  Y  + +   K+K+     K F  M K    P 
Sbjct: 395 FCRKGDMDSAIKFWEEMTSNNFSPSAFNYCSLIKGYYKSKQFANALKEFRIMQKLGMWPD 454

Query: 396 PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 438
            + C   +++     +   A+ +     ENG+     S NE +
Sbjct: 455 TIACNHILSIYCRKPDFNKALALSEKFQENGVHFNPYSYNEFI 497



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 72/176 (40%), Gaps = 9/176 (5%)

Query: 315 MVGIGFNLMPNLI---------MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYN 365
           + G+ + L+ NL           +NAVI  LC    +D     F +M   G  PD  +Y+
Sbjct: 260 LFGVAWRLIQNLCRKNQPLNNHCFNAVIYGLCQGGILDEASEVFKEMKNSGILPDVYSYS 319

Query: 366 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 425
           ++ +   +  RV +  + F EM  +   P   + +  I         + A+E++  +  +
Sbjct: 320 ILIDGFCRKGRVDQASEVFKEMRNSGILPNIYSYSILIDGFCKEGRVDKALEVFEEMKNS 379

Query: 426 GILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
           GILP   S + L+ G    G +    +F EEM +            L K +Y   +
Sbjct: 380 GILPDVYSYSILIDGFCRKGDMDSAIKFWEEMTSNNFSPSAFNYCSLIKGYYKSKQ 435



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/255 (19%), Positives = 102/255 (40%), Gaps = 4/255 (1%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAG 161
           ++   G   +PY++N  +  + +    E+    + VM +  VL  +  ++++   +    
Sbjct: 480 KFQENGVHFNPYSYNEFIHRICRGSVPEKALQLLPVMLKRNVLPDVVNYSTLISCFAKRL 539

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221
             ++AVM F  M+  G+  +V     L++              F    +  V PD  ++ 
Sbjct: 540 NSEKAVMLFIKMTKVGITFNVKTYTILINLFISDCKMDVAYRLFKGMKESRVYPDQIAYT 599

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L+ G+   G +  A   F EM    E    +V+ Y  F+   ++  + ++A K    MK
Sbjct: 600 SLVAGFCNTGEMTRARALFDEMSR--EGCSPNVVTYTCFINEYLKLNKNNQAHKLYEKMK 657

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
               +P    ++  +       +   A  L+D M   G    PN++MY  +I      + 
Sbjct: 658 ERGVYPDQILYTMLIAAFCNTGEMNRAEALFDEMKQEG-RCTPNVVMYTCLINSYIKLNK 716

Query: 342 VDNVFRFFDQMVFHG 356
            D   + +++M   G
Sbjct: 717 RDQAEKLYEEMRAKG 731



 Score = 44.7 bits (104), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 38/187 (20%), Positives = 78/187 (41%), Gaps = 3/187 (1%)

Query: 136 VRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
           +++ K     ++ T+  + + +    K D A   F  M    V  D +A  SL++  C  
Sbjct: 549 IKMTKVGITFNVKTYTILINLFISDCKMDVAYRLFKGMKESRVYPDQIAYTSLVAGFCNT 608

Query: 196 ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
              T     F    ++   P+  ++   +  + K     +A+K + +M ER  + P+ +L
Sbjct: 609 GEMTRARALFDEMSREGCSPNVVTYTCFINEYLKLNKNNQAHKLYEKMKERGVY-PDQIL 667

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGEN-CFPTLKFFSNALDILVKLNDSTHAVQLWDI 314
            Y   +       +++ A      MK E  C P +  ++  ++  +KLN    A +L++ 
Sbjct: 668 -YTMLIAAFCNTGEMNRAEALFDEMKQEGRCTPNVVMYTCLINSYIKLNKRDQAEKLYEE 726

Query: 315 MVGIGFN 321
           M   G +
Sbjct: 727 MRAKGLS 733


>gi|222613072|gb|EEE51204.1| hypothetical protein OsJ_32019 [Oryza sativa Japonica Group]
          Length = 615

 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 135/302 (44%), Gaps = 5/302 (1%)

Query: 129 FEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS 187
            ++    +  M ++GV+    T+ SI   YC +G+  EA+ +   M   GVE +VV  +S
Sbjct: 225 MDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSS 284

Query: 188 LLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF 247
           L++ +C+    T     F +  K+ ++PD  ++  LL+G  KEG V E+ K F  MV R 
Sbjct: 285 LMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMV-RI 343

Query: 248 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 307
              P+ ++ Y T +       ++DEA K L  M      P +  +   ++   +++    
Sbjct: 344 GVKPD-IITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDD 402

Query: 308 AVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMI 367
           A+ L+  MV  G +  PN+I YN ++  L +          +  +   G   +  TYN+I
Sbjct: 403 ALALFKEMVSSGVS--PNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNII 460

Query: 368 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 427
              L KN    E  + F  +   + Q         I  LL     + A +++     NG+
Sbjct: 461 LHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGL 520

Query: 428 LP 429
           +P
Sbjct: 521 VP 522



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 79/348 (22%), Positives = 148/348 (42%), Gaps = 14/348 (4%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           ++ T+A +    C AG+ D    +   +   G   D +    LL  +C  + +TS A++ 
Sbjct: 91  TVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLC-ADKRTSDAMDI 149

Query: 206 -LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE-RFEWNPEHVLAYETFL- 261
            L R+ ++   PD  S+  LL+G   E   +EA +    M + R   +P  V++Y T L 
Sbjct: 150 VLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLN 209

Query: 262 -------ITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314
                   T +  + +D+A++ L  M      P    +++ L           A+     
Sbjct: 210 GFFKEGIQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKK 269

Query: 315 MVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN 374
           M   G    PN++ Y++++  LC N       + FD M   G  PD  TY  + +   K 
Sbjct: 270 MRSDGVE--PNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKE 327

Query: 375 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 434
            RV E EK F  M++   +P  +   T I     A + + A ++   ++  G+ P   + 
Sbjct: 328 GRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTY 387

Query: 435 NELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 482
             L+ G   + R+ D     +EM++  +    +T + + +  ++  R+
Sbjct: 388 GTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRT 435



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/348 (23%), Positives = 147/348 (42%), Gaps = 17/348 (4%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
           +G R+    +  ++  L  + R     + V R M E G +  + ++ ++    C   +  
Sbjct: 121 KGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQ 180

Query: 165 EAVMSFDVMS---MHGVEQDVVAVNSLLSAICRQENQTS-------RALEFLNR-VKKIV 213
           EA+    +M+     G   DVV+ N++L+   ++  QT        +A+E LN  VK  V
Sbjct: 181 EALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGIQTKLTAQAMDKAMEVLNTMVKNGV 240

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
            PD  ++  +L G+   G  +EA  T  +M  R +    +V+ Y + +  L +  +  EA
Sbjct: 241 MPDCMTYNSILHGYCSSGQPKEAIGTLKKM--RSDGVEPNVVTYSSLMNYLCKNGRSTEA 298

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
            K    M      P +  +   L    K      + +L+D+MV IG    P++I YN +I
Sbjct: 299 RKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVK--PDIITYNTLI 356

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
              C    +D   +    MV  G  PD +TY  +     +  R+ +    F EM+ +   
Sbjct: 357 DGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVS 416

Query: 394 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 441
           P  +     +  L        A E++  I ++G     ++ N +L GL
Sbjct: 417 PNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGL 464


>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
          Length = 722

 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 90/382 (23%), Positives = 173/382 (45%), Gaps = 22/382 (5%)

Query: 82  DLVHEVLQ-LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMK 140
           D +H + + L     +  VD  R   RG   + + + +++  L + G+ ++    +  + 
Sbjct: 292 DAIHGLCKMLRIHEAAKLVD--RMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVP 349

Query: 141 EDGVLSLPTFASIFDSYCGAGKYDEA--VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198
              V+    F ++ + Y   G+ DEA  VM   ++S+ G   D+   N+L+  +C++   
Sbjct: 350 NPNVV---LFNTLINGYVSRGRLDEAKAVMHESMLSV-GCGPDIFTYNTLILGLCKKGYL 405

Query: 199 TSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
            S A E +N ++ K  +P+  ++ IL++ + KEG +EEA     EM  +      + + Y
Sbjct: 406 VS-ARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGK--GLALNAVGY 462

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317
              +  L + ++V +AL     M  + C P +  F++ +  L K+N    A+ L+  M+ 
Sbjct: 463 NCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLL 522

Query: 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
            G  ++ N I YN +I        +    +  + M+F G   D +TYN + + L +   +
Sbjct: 523 EG--VIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNI 580

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 437
            +    F +M+     P  ++C   I  L      + A+E    ++  G+ P   + N L
Sbjct: 581 EKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSL 640

Query: 438 LVGLRNLGRLSDVRRFAEEMLN 459
           + GL   GR       A+E LN
Sbjct: 641 INGLCKTGR-------AQEALN 655



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 93/407 (22%), Positives = 170/407 (41%), Gaps = 14/407 (3%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAG--RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVR 137
           TP  + ++L+L  D P+S ++ F+WAG  +G       + +++D LG  G F+ +   + 
Sbjct: 77  TPYQLCKLLELPLDVPTS-MELFQWAGTQKGYCHMFDVYYMLIDKLGAAGEFKTIDALLM 135

Query: 138 VMKEDGVLSLPT-FASIFDSYCGAGKYDEAV-MSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
            MK++G++   + F  I   Y  AG   +A  +  D+  ++  E    + N +L  +   
Sbjct: 136 QMKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLDMRGVYSCEPTFRSYNVVLDVLLAG 195

Query: 196 ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
                    F   + K + P   +F ++++       V+ A     +M  R    P + +
Sbjct: 196 NCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACALLKDMT-RHGCVP-NAI 253

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
            Y+T +  L +  +V+E LK L  M    C P +  F++A+  L K+     A +L D M
Sbjct: 254 VYQTLIHALXKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRM 313

Query: 316 VGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 375
           +  GF   PN   Y  ++  LC    VD      +++      P+ + +N +    +   
Sbjct: 314 LLRGFT--PNSFTYGVLMHGLCRMGKVDEARMLLNKV----PNPNVVLFNTLINGYVSRG 367

Query: 376 RVHEVEKFFHE-MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 434
           R+ E +   HE M+     P      T I  L        A E+ N +   G  P   + 
Sbjct: 368 RLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITY 427

Query: 435 NELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
             L+      GRL + R   +EM  + + +  V  + L  A   + +
Sbjct: 428 TILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEK 474



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 80/414 (19%), Positives = 174/414 (42%), Gaps = 14/414 (3%)

Query: 67  DIESALACTGIIPTPDLVHEVLQLSYDSPSSAVD-FFRWAGRGQRLSPYAWNLMVDVLGK 125
           D+    +C     + ++V +VL L+ + P    + F+    +G   + Y + +++  L  
Sbjct: 171 DMRGVYSCEPTFRSYNVVLDVL-LAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCL 229

Query: 126 NGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVA 184
               +     ++ M   G + +   + ++  +    G+ +E +   + M + G   DV  
Sbjct: 230 VNEVDSACALLKDMTRHGCVPNAIVYQTLIHALXKVGRVNEVLKLLEEMLLMGCIPDVNT 289

Query: 185 VNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
            N  +  +C+   +   A + ++R + +   P+  ++ +L+ G  + G V+EA     ++
Sbjct: 290 FNDAIHGLCKML-RIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKV 348

Query: 244 VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR-VMKGENCFPTLKFFSNALDILVKL 302
                 NP  VL + T +   +   ++DEA   +   M    C P +  ++  +  L K 
Sbjct: 349 P-----NPNVVL-FNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKK 402

Query: 303 NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSL 362
                A +L + M   G    PN+I Y  +I   C    ++      D+M   G   +++
Sbjct: 403 GYLVSARELMNEMQIKGCE--PNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAV 460

Query: 363 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 422
            YN +   L K+++V +    F +M     +P      + I  L   ++ E A+ ++  +
Sbjct: 461 GYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDM 520

Query: 423 LENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
           L  G++    + N L+      G + +  +   +ML R   + ++T + L KA 
Sbjct: 521 LLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKAL 574


>gi|297821008|ref|XP_002878387.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324225|gb|EFH54646.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 766

 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 90/390 (23%), Positives = 163/390 (41%), Gaps = 45/390 (11%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMK--EDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           +N ++D L K GR ++    +  MK  E  V +  T+  + D YC AGK + A      M
Sbjct: 373 FNTLIDGLCKVGRLKEAEELLVRMKMEERCVPNTVTYNCLIDGYCRAGKLETAKEVVSRM 432

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G++ DVV VN+++  +CR        L F++  K+ V  +  ++  L+       N+
Sbjct: 433 KEDGIKPDVVTVNTIVGGMCRHHGLNMAVLFFMDMEKEGVKGNVVTYMTLIHACCSLSNI 492

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           E+A   F +M+E                                       C P  K + 
Sbjct: 493 EKAMHWFDKMLE-------------------------------------AGCSPDAKIYY 515

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +  L ++     A+++ + +   GF+L  +L+ YN +IGL C+ ++ + V+     M 
Sbjct: 516 ALISGLCQVRRDHDAIRVVEKLREGGFSL--DLLAYNMLIGLFCDKNNAEKVYEMLTDME 573

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G  PDS+TYN +     K+K    VE+   +M ++E  PT       I       E  
Sbjct: 574 KEGMKPDSITYNTLISFFGKHKDFESVERMMEQMREDELDPTVATYGAVIEAYCSVGELG 633

Query: 414 IAIEIWNYI-LENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
            A++++  + L + + P     N L+     LG         EEM  + +     T + L
Sbjct: 634 EALKLFKDMGLRSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETYNAL 693

Query: 473 KKAF--YNESRSMRDIFDSL-ERRCKTSQM 499
            K     N++ ++  + D + E+ C+ +Q+
Sbjct: 694 FKCLKEKNQAETLLKLMDEMVEQSCEPNQI 723



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/334 (20%), Positives = 133/334 (39%), Gaps = 41/334 (12%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N ++D   + G+ E     V  MKEDG+   + T  +I    C     + AV+ F  M
Sbjct: 408 TYNCLIDGYCRAGKLETAKEVVSRMKEDGIKPDVVTVNTIVGGMCRHHGLNMAVLFFMDM 467

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGW----- 227
              GV+ +VV   +L+ A C   N   +A+ + ++ ++    PD   +  L+ G      
Sbjct: 468 EKEGVKGNVVTYMTLIHACCSLSN-IEKAMHWFDKMLEAGCSPDAKIYYALISGLCQVRR 526

Query: 228 ----------EKEG--------------------NVEEANKTFGEMVERFEWNPEHVLAY 257
                      +EG                    N E+  +   +M E+    P+ +  Y
Sbjct: 527 DHDAIRVVEKLREGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDM-EKEGMKPDSI-TY 584

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317
            T +    + K  +   + +  M+ +   PT+  +   ++    + +   A++L+  M G
Sbjct: 585 NTLISFFGKHKDFESVERMMEQMREDELDPTVATYGAVIEAYCSVGELGEALKLFKDM-G 643

Query: 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
           +   + PN ++YN +I       +        ++M      P+  TYN +F+CL +  + 
Sbjct: 644 LRSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETYNALFKCLKEKNQA 703

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
             + K   EM++   +P  +     +  L  +DE
Sbjct: 704 ETLLKLMDEMVEQSCEPNQITMEILMERLSGSDE 737



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 85/178 (47%), Gaps = 9/178 (5%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEA 166
           G +     +N ++   GK+  FE +   +  M+ED +  ++ T+ ++ ++YC  G+  EA
Sbjct: 576 GMKPDSITYNTLISFFGKHKDFESVERMMEQMREDELDPTVATYGAVIEAYCSVGELGEA 635

Query: 167 VMSFDVMSMHG-VEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILL 224
           +  F  M +   V  + V  N L++A  +  N   +AL     +K K+V P+ +++  L 
Sbjct: 636 LKLFKDMGLRSKVNPNTVIYNILINAFSKLGN-FGQALSLKEEMKMKMVRPNVETYNALF 694

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           +  +++   E   K   EMVE+    P  +    T  I + R    DE +K  + M+G
Sbjct: 695 KCLKEKNQAETLLKLMDEMVEQ-SCEPNQI----TMEILMERLSGSDELVKLRKFMQG 747



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/238 (20%), Positives = 100/238 (42%), Gaps = 7/238 (2%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           + ++    C   +  +A+   + +   G   D++A N L+   C  +N   +  E L  +
Sbjct: 514 YYALISGLCQVRRDHDAIRVVEKLREGGFSLDLLAYNMLIGLFC-DKNNAEKVYEMLTDM 572

Query: 210 KK-IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           +K  + PD  ++  L+  + K  + E   +   +M E  E +P  V  Y   +       
Sbjct: 573 EKEGMKPDSITYNTLISFFGKHKDFESVERMMEQMRED-ELDPT-VATYGAVIEAYCSVG 630

Query: 269 QVDEALKFLRVMK-GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
           ++ EALK  + M       P    ++  ++   KL +   A+ L + M      + PN+ 
Sbjct: 631 ELGEALKLFKDMGLRSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMK--MVRPNVE 688

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 385
            YNA+   L   +  + + +  D+MV     P+ +T  ++ E L  +  + ++ KF  
Sbjct: 689 TYNALFKCLKEKNQAETLLKLMDEMVEQSCEPNQITMEILMERLSGSDELVKLRKFMQ 746


>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 757

 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 84/420 (20%), Positives = 180/420 (42%), Gaps = 56/420 (13%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N+++  +   G  E+    +R M+++G+  ++ T+ ++ D+ C   K  EA+     
Sbjct: 208 YTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCKKKKVKEAMALLRA 267

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEG 231
           M++ GV  ++++ NS+++ +C  + + S   E +  ++ K + PD  ++  L+ G+ KEG
Sbjct: 268 MAVGGVAANLISYNSVINGLC-GKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEG 326

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           N+ +      EMV +   +P +V+ Y T +  + +   +  A++    M+     P  + 
Sbjct: 327 NLHQGLVLLSEMVGK-GLSP-NVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERT 384

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFN------------------------------ 321
           ++  +D   +      A ++   M+  GF+                              
Sbjct: 385 YTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMV 444

Query: 322 ---LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVH 378
              L P+++ Y+ VI   C   ++   F+  ++MV  G  PD++TY+ + + L   +++ 
Sbjct: 445 ERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLV 504

Query: 379 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 438
           E    F EM++    P  +   + I       E   A+ + + +++ G LP   + + L+
Sbjct: 505 EAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLI 564

Query: 439 VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQ 498
            GL    R    +R                   L K FY ES      +++L   C  ++
Sbjct: 565 NGLNKKARTKVAKRL------------------LLKLFYEESVPDDVTYNTLIENCSNNE 606



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 92/415 (22%), Positives = 163/415 (39%), Gaps = 79/415 (19%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQR-----LSPYAWNLMVDVLGKNGRFEQMWN 134
           TP     VL  S     + ++F  WA    +      +P+   L + +L    RF +++ 
Sbjct: 38  TPQAASYVLLNSQSDQRTLLNFLTWAQAQAQAHNFFFTPHCKCLALHILV---RF-KLYR 93

Query: 135 AVRVMKEDGVLSLP--TFASIF----DSY--CGAGKYDEAVMSFDVMSM----------- 175
               +  D   +LP  T AS+F    D++  C +     AV    V S+           
Sbjct: 94  TAHSLAADLAATLPDPTGASLFRHLHDTFHLCSSPFSSSAVFDLVVKSLSRLGFVPKALT 153

Query: 176 -------HGVEQDVVAVNSLLSAICRQENQTSRALE-----FLNRVKKIVDPDGDSFAIL 223
                  HG    V++ N++L A+ R+ +   R  +     F + V+  V P+  ++ ++
Sbjct: 154 LLHLANRHGFAPTVLSYNAVLDALLRRSSSNHRDYDDAERVFRDMVRNGVSPNVYTYNVI 213

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           + G   +G++E+    F   +E+   +P +V+ Y T +    + K+V EA+  LR M   
Sbjct: 214 IRGVVSQGDLEKG-LGFMRKMEKEGISP-NVVTYNTLIDASCKKKKVKEAMALLRAMA-- 269

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
                                           VG    +  NLI YN+VI  LC    + 
Sbjct: 270 --------------------------------VG---GVAANLISYNSVINGLCGKGRMS 294

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
            V    ++M   G  PD +TYN +     K   +H+      EM+     P  +   T I
Sbjct: 295 EVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLI 354

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
             +  A     A+EI++ +   G+ P E +   L+ G    G +++  +   EM+
Sbjct: 355 NCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMI 409



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 68/310 (21%), Positives = 132/310 (42%), Gaps = 23/310 (7%)

Query: 96  SSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASI 153
           S AV+ F +   RG R +   +  ++D   + G   + +  +  M   G   S+ T+ ++
Sbjct: 364 SRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNAL 423

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKI 212
              YC  G+  EAV     M   G+  DVV+ +++++  CR E +  +A +     V+K 
Sbjct: 424 VHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCR-ERELGKAFQMKEEMVEKG 482

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
           V PD  +++ L++G   +  + EA   F EM+ R    P   + Y + +       ++ +
Sbjct: 483 VLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRR--GLPPDEVTYTSLINAYCVDGELSK 540

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAV 332
           AL+    M      P    +S  ++ L K   +  A +L  ++       +P+ + YN +
Sbjct: 541 ALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRL--LLKLFYEESVPDDVTYNTL 598

Query: 333 I------------GLL---CNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
           I            GL+   C    ++   R F  M+     P++  YN++     +   V
Sbjct: 599 IENCSNNEFKSVEGLVKGFCMKGLMNEADRVFKTMLQRNHKPNAAIYNLMIHGHSRGGNV 658

Query: 378 HEVEKFFHEM 387
           H+    + E+
Sbjct: 659 HKAYNLYMEL 668



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 106/246 (43%), Gaps = 13/246 (5%)

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH-----AVQL 311
           ++  + +L R   V +AL  L +       PT+  ++  LD L++ + S H     A ++
Sbjct: 135 FDLVVKSLSRLGFVPKALTLLHLANRHGFAPTVLSYNAVLDALLRRSSSNHRDYDDAERV 194

Query: 312 WDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECL 371
           +  MV  G +  PN+  YN +I  + +  D++    F  +M   G  P+ +TYN + +  
Sbjct: 195 FRDMVRNGVS--PNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDAS 252

Query: 372 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 431
            K K+V E       M         ++  + I  L          E+   +   G++P E
Sbjct: 253 CKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDE 312

Query: 432 ASANELLVGLRNLGRLSDVRRFAEEMLNR----RILIYEVTMHKLKKAFYNESRSMRDIF 487
            + N L+ G    G L        EM+ +     ++ Y   ++ + KA  N SR++ +IF
Sbjct: 313 VTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAG-NLSRAV-EIF 370

Query: 488 DSLERR 493
           D +  R
Sbjct: 371 DQMRVR 376


>gi|147846788|emb|CAN80625.1| hypothetical protein VITISV_032617 [Vitis vinifera]
          Length = 733

 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 92/407 (22%), Positives = 179/407 (43%), Gaps = 13/407 (3%)

Query: 81  PDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWNAVRV 138
           P  V  VLQL  D    A+ FF WA R  R    P  +  M+++L K    +     +R+
Sbjct: 101 PRQVCAVLQLQTDE-RVALRFFYWADRQWRYRHDPIVYYAMLEILSKTKLCQGAKRVLRL 159

Query: 139 MKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           M +  +   P  F  +  SY  AGK   A+    +M   G+E D+   N+ +  +    N
Sbjct: 160 MAKRRIERRPEAFGYVMVSYSRAGKLRNAMRXLTMMQKAGIEPDLSICNTAIHVLV-MGN 218

Query: 198 QTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
           +  +A+ FL R++ + + P+  ++  L++G+     +E+A +   EM   F+      ++
Sbjct: 219 RLDKAVRFLERMQIVEIXPNVITYNCLIKGYCDLHRLEDAXELIAEMP--FKGCSPDKIS 276

Query: 257 YETFLITLIRGKQVDEALKFL--RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314
           Y T +  L + K++ E L+ L  +++K  N  P    ++  + +L K      A++    
Sbjct: 277 YYTVMGFLCKEKRIKE-LRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLRE 335

Query: 315 MVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN 374
                F +  + + Y+A++   C    +D      ++M   G  PD +TY  +   L + 
Sbjct: 336 AEERRFRV--DKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQE 393

Query: 375 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 434
           ++V + +K   +M K+  +P  ++    +  L        A E+ N   E   +P   + 
Sbjct: 394 RKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEXWWIPNAITY 453

Query: 435 NELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
           + L+ G R  G+ S+      EM+ +      V ++ L ++   E +
Sbjct: 454 SVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEK 500



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 156/368 (42%), Gaps = 9/368 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N  V +L K+G  ++    +R  +E    +    +++I  S+C  G+ D+A    + M
Sbjct: 312 TYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEM 371

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGN 232
              G   DVV   S+++ +C QE +  +A + L ++ K    P+  S+  LL G  K GN
Sbjct: 372 FSKGCIPDVVTYTSVINGLC-QERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGN 430

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
             EA +    M E   W P + + Y   +    R  +  EA   +R M  +  FPT    
Sbjct: 431 SLEAREMMN-MSEEXWWIP-NAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEI 488

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  +  L +      A +  +  +  G  +  N++ +  VI   C  DD++      D M
Sbjct: 489 NLLIQSLCQEEKVDEAKRFMEQCLNNGCAV--NVVNFTTVIHGFCQKDDLEAALSLLDDM 546

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
                 PD +TY  I + L K  R+ E  K   +M++  W PTP+   T I         
Sbjct: 547 YLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGWIPTPVTYRTVIHQYCRMGRV 606

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
           E  +++   +L         + N+++  L + G L    +   ++L     I   T H L
Sbjct: 607 EDLLKLLEKMLSRQ--ECRTAYNQVIEKLCSFGNLEQAYKLLGKVLRTASKIDANTCHML 664

Query: 473 KKAFYNES 480
            +++ ++ 
Sbjct: 665 IESYLSKG 672


>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
 gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
          Length = 836

 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 86/364 (23%), Positives = 163/364 (44%), Gaps = 7/364 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWN-AVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N ++  L K+GR ++ +    +++KE    SL T++   +      K DEA      M
Sbjct: 293 TYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSPSLITYSVFINGLIKLEKIDEANCVLKEM 352

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEKEGN 232
           S  G   + V  N+L+   C+  N  S AL+  +  + K + P+  +   L++G+ K   
Sbjct: 353 SELGFVPNEVVYNTLIDGYCKMGN-ISEALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQ 411

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           + +A     EM+ R    P +  ++   +  L    +   AL F+R M   N  P     
Sbjct: 412 IGQAENVLEEMIGR--GLPINQGSFSMVINWLCLKFRFVTALHFIREMLLRNLRPNDGLL 469

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  +  L K      AV+LW  ++G GF  +PN++  NA+I  LC   ++    +    M
Sbjct: 470 TTLVSGLCKAGKQGEAVELWCRLLGKGF--VPNIVTSNALIHGLCKAGNMQETLKLLRDM 527

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
           +  G   D +TYN +     K  +V E  +   EM+K   QP        +  L +AD+ 
Sbjct: 528 LERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNADKI 587

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
           + A  +W+   +NG +P   +   ++ G     ++ +      E++++++ +  V  + L
Sbjct: 588 DEASRLWHECKKNGYVPNVYTYGVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSL 647

Query: 473 KKAF 476
            +A+
Sbjct: 648 IRAY 651



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/337 (21%), Positives = 160/337 (47%), Gaps = 6/337 (1%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           SL T   +  S   A +  ++   +D + + G+  DV   +++++A C+   +   A+  
Sbjct: 220 SLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMINAFCKGHREDD-AIGL 278

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
            ++++K+ V P+  ++  ++ G  K G ++EA + F E + + + +P  ++ Y  F+  L
Sbjct: 279 FSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYR-FKEKMVKEKVSPS-LITYSVFINGL 336

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
           I+ +++DEA   L+ M      P    ++  +D   K+ + + A+++ D M+  G +  P
Sbjct: 337 IKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDMLSKGIS--P 394

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           N +  N++I   C +D +       ++M+  G   +  +++M+   L    R      F 
Sbjct: 395 NSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSMVINWLCLKFRFVTALHFI 454

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
            EM+    +P      T ++ L  A +   A+E+W  +L  G +P   ++N L+ GL   
Sbjct: 455 REMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFVPNIVTSNALIHGLCKA 514

Query: 445 GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
           G + +  +   +ML R ++   +T + L      E +
Sbjct: 515 GNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGK 551



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 148/350 (42%), Gaps = 8/350 (2%)

Query: 124 GKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV 183
           GK G   ++W   R++ +  V ++ T  ++    C AG   E +     M   G+  D +
Sbjct: 480 GKQGEAVELW--CRLLGKGFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRI 537

Query: 184 AVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
             N+L+S  C+ E +     E     VKK + PD  +F +LL G      ++EA++ + E
Sbjct: 538 TYNTLISGCCK-EGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHE 596

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
             ++  + P +V  Y   +    +  +V+E    L  +  +        +++ +      
Sbjct: 597 -CKKNGYVP-NVYTYGVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCIN 654

Query: 303 NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSL 362
            +   A +L D M   G  ++ +   Y++++  LCN   VD+     D+M   G  P+ +
Sbjct: 655 GNMNAAFRLRDDMKSRG--VLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVV 712

Query: 363 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 422
            Y  I     K  ++++V     EM  +   P        I       + + A ++ N +
Sbjct: 713 CYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEM 772

Query: 423 LENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
            E GILP   + N    GL   G++ +  +  +EM +  + + E+T   L
Sbjct: 773 TEKGILPDAVTYNAFTNGLCKEGKVEEAFKVCDEMSSGAVCLDEITYTTL 822



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 98/191 (51%), Gaps = 2/191 (1%)

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
           FP+LK  +  L  LVK N+   + +++D +   G  ++P++ +++ +I   C     D+ 
Sbjct: 218 FPSLKTCTFLLSSLVKANELKKSYEVYDFICLGG--IIPDVHLFSTMINAFCKGHREDDA 275

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
              F +M   G  P+ +TYN I   L K+ R+ E  +F  +M+K +  P+ +  +  I  
Sbjct: 276 IGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSPSLITYSVFING 335

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 465
           L+  ++ + A  +   + E G +P E   N L+ G   +G +S+  +  ++ML++ I   
Sbjct: 336 LIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDMLSKGISPN 395

Query: 466 EVTMHKLKKAF 476
            VT++ L + F
Sbjct: 396 SVTLNSLIQGF 406



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 118/267 (44%), Gaps = 11/267 (4%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQ---MWNAVRVMKEDGVLSLPTFASIFDSYCGAGKY 163
           +G +   Y +NL++  L    + ++   +W+  +  K   V ++ T+  + D YC A K 
Sbjct: 565 KGIQPDIYTFNLLLHGLCNADKIDEASRLWHECK--KNGYVPNVYTYGVMIDGYCKANKV 622

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAI 222
           +E     + +    +E + V  NSL+ A C   N  + A    + +K + V     +++ 
Sbjct: 623 EEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNA-AFRLRDDMKSRGVLLSCATYSS 681

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+ G    G V++A     EM  R E    +V+ Y T +    +  Q+++    L+ M  
Sbjct: 682 LMHGLCNIGLVDDAKHLLDEM--RKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSS 739

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
            N  P    ++  +D   KL  +  A +L + M   G  ++P+ + YNA    LC    V
Sbjct: 740 HNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKG--ILPDAVTYNAFTNGLCKEGKV 797

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFE 369
           +  F+  D+M       D +TY  + +
Sbjct: 798 EEAFKVCDEMSSGAVCLDEITYTTLID 824


>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62680, mitochondrial; Flags: Precursor
 gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 143/320 (44%), Gaps = 4/320 (1%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           + +I DS C   + ++A   F  +   G+  +VV   +L++ +C     +  A    + +
Sbjct: 193 YNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMI 252

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
           KK + P+  +++ LL+ + K G V EA + F EMV R   +P+ ++ Y + +  L    +
Sbjct: 253 KKKITPNVITYSALLDAFVKNGKVLEAKELFEEMV-RMSIDPD-IVTYSSLINGLCLHDR 310

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY 329
           +DEA +   +M  + C   +  ++  ++   K       ++L+  M   G  L+ N + Y
Sbjct: 311 IDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRG--LVSNTVTY 368

Query: 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389
           N +I       DVD    FF QM F G  PD  TYN++   L  N  + +    F +M K
Sbjct: 369 NTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQK 428

Query: 390 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 449
            E     +   T I  +    + E A  ++  +   G+ P   +   ++ GL   G L +
Sbjct: 429 REMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHE 488

Query: 450 VRRFAEEMLNRRILIYEVTM 469
           V     +M    ++  + T+
Sbjct: 489 VEALYTKMKQEGLMKNDCTL 508



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 146/317 (46%), Gaps = 6/317 (1%)

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206
           L TF  + + +C   +   A+     M   G E D V + SL++  CR+ N+ S A+  +
Sbjct: 120 LYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRR-NRVSDAVSLV 178

Query: 207 NRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
           +++ +I   PD  ++  +++   K   V +A   F E +ER    P +V+ Y   +  L 
Sbjct: 179 DKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKE-IERKGIRP-NVVTYTALVNGLC 236

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN 325
              +  +A + L  M  +   P +  +S  LD  VK      A +L++ MV +  +  P+
Sbjct: 237 NSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSID--PD 294

Query: 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 385
           ++ Y+++I  LC +D +D   + FD MV  G   D ++YN +     K KRV +  K F 
Sbjct: 295 IVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFR 354

Query: 386 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
           EM +       +   T I     A + + A E ++ +   GI P   + N LL GL + G
Sbjct: 355 EMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNG 414

Query: 446 RLSDVRRFAEEMLNRRI 462
            L       E+M  R +
Sbjct: 415 ELEKALVIFEDMQKREM 431



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 72/334 (21%), Positives = 143/334 (42%), Gaps = 41/334 (12%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  F  +  +     KYD  +     M + G+  D+   N +++  C    Q S AL  
Sbjct: 84  SIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFC-CCFQVSLALSI 142

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L ++ K+  +PD  +   L+ G+ +   V +A     +MVE   + P+ ++AY   + +L
Sbjct: 143 LGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVE-IGYKPD-IVAYNAIIDSL 200

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
            + K+V++A  F + ++ +                                      + P
Sbjct: 201 CKTKRVNDAFDFFKEIERKG-------------------------------------IRP 223

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           N++ Y A++  LCN+    +  R    M+     P+ +TY+ + +  +KN +V E ++ F
Sbjct: 224 NVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELF 283

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
            EM++    P  +  ++ I  L   D  + A ++++ ++  G L    S N L+ G    
Sbjct: 284 EEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKA 343

Query: 445 GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 478
            R+ D  +   EM  R ++   VT + L + F+ 
Sbjct: 344 KRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQ 377



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 95/232 (40%), Gaps = 4/232 (1%)

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL 322
           T +R  ++++A+     M     FP++  F+  L  +VKL      + L   M  +G  +
Sbjct: 59  TRLRDIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLG--I 116

Query: 323 MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
             +L  +N VI   C    V        +M+  G  PD +T   +     +  RV +   
Sbjct: 117 RNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVS 176

Query: 383 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 442
              +M++  ++P  +     I  L        A + +  I   GI P   +   L+ GL 
Sbjct: 177 LVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLC 236

Query: 443 NLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSM--RDIFDSLER 492
           N  R SD  R   +M+ ++I    +T   L  AF    + +  +++F+ + R
Sbjct: 237 NSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVR 288



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 49/214 (22%), Positives = 87/214 (40%), Gaps = 13/214 (6%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++N +++   K  R E      R M + G++S   T+ ++   +  AG  D+A   F  M
Sbjct: 332 SYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQM 391

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G+  D+   N LL  +C         + F +  K+ +D D  ++  ++ G  K G V
Sbjct: 392 DFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKV 451

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           EEA   F  +  +    P+ ++ Y T +  L     + E       MK E          
Sbjct: 452 EEAWSLFCSLSLK-GLKPD-IVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKN----- 504

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
              D  +   D T + +L   M+  G+   P+L+
Sbjct: 505 ---DCTLSDGDITLSAELIKKMLSCGY--APSLL 533



 Score = 43.1 bits (100), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 10/102 (9%)

Query: 97  SAVDFFRWAGRGQRLSPYAW--NLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASI 153
           S +DFF        +SP  W  N+++  L  NG  E+       M K +  L + T+ ++
Sbjct: 389 SQMDFFG-------ISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTV 441

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
               C  GK +EA   F  +S+ G++ D+V   +++S +C +
Sbjct: 442 IRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTK 483


>gi|356574876|ref|XP_003555569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08610-like [Glycine max]
          Length = 589

 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 153/360 (42%), Gaps = 11/360 (3%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDG----VLSLPTFASIFDSYCGAGKYDEAVMSF 170
            +N ++  L   G F Q  N  R     G    +++      +   YCGA +   A+   
Sbjct: 237 TYNSIIRCLFDKGNFNQAVNFWRDQLRKGCPPYLITYTVLIELVCKYCGAAR---ALEVL 293

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
           + M+M G   D+V  NSL++   +Q      AL  LN +   + P+  ++  L+      
Sbjct: 294 EDMAMEGCYPDIVTYNSLVNLTSKQGKYEDTALVILNLLSHGMQPNAVTYNTLIHSLINH 353

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           G  +E +     M E     P HV  Y   L  L +   +D A+ F   M  ENC P + 
Sbjct: 354 GYWDEVDDILKIMNETSS-PPTHV-TYNILLNGLCKSGLLDRAISFYSTMVTENCSPDII 411

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
            ++  L  L K       +QL +++VG   +  P L+ YN VI  L     +++    +D
Sbjct: 412 TYNTLLSGLCKEGFIDEGIQLLNLLVGTSCS--PGLVTYNIVIDGLARLGSMESAKELYD 469

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
           +MV  G  PD +T++ +     +  ++ E  +   EM   E +         I  L    
Sbjct: 470 EMVDKGIIPDEITHSSLTWGFCRADQLEEATELLKEMSMKEQRIKNTAYRCVILGLCRQK 529

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 470
           + +IAI++ + +++    P E   + L+  + + G L +     + ++  +IL  E+ ++
Sbjct: 530 KVDIAIQVLDLMVKGQCNPDERIYSALIKAVADGGMLKEANDLHQTLIKWKILKKEIMLN 589



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/365 (19%), Positives = 157/365 (43%), Gaps = 13/365 (3%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
           N ++  L   G+       + VM ++  +   P+  ++   +   G  DEA  + + M M
Sbjct: 134 NEILQRLCSRGKLTVAARLIDVMARKSQIPHFPSCTNLIRGFIRKGLVDEACKTLNKMVM 193

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVE 234
            G   D +  N ++  +C+     S AL+ +  +      PD  ++  ++     +GN  
Sbjct: 194 SGGVPDTITYNMVIGGLCKNGRLRS-ALDLVEDMSLSGCSPDAITYNSIIRCLFDKGNFN 252

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           +A   + + + +    P +++ Y   +  + +      AL+ L  M  E C+P +  +++
Sbjct: 253 QAVNFWRDQLRK--GCPPYLITYTVLIELVCKYCGAARALEVLEDMAMEGCYPDIVTYNS 310

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN---DDVDNVFRFFDQ 351
            +++  K         +  I+  +   + PN + YN +I  L N+   D+VD++ +  ++
Sbjct: 311 LVNLTSKQGKYEDTALV--ILNLLSHGMQPNAVTYNTLIHSLINHGYWDEVDDILKIMNE 368

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
                + P  +TYN++   L K+  +     F+  M+     P  +   T ++ L     
Sbjct: 369 T---SSPPTHVTYNILLNGLCKSGLLDRAISFYSTMVTENCSPDIITYNTLLSGLCKEGF 425

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK 471
            +  I++ N ++     P   + N ++ GL  LG +   +   +EM+++ I+  E+T   
Sbjct: 426 IDEGIQLLNLLVGTSCSPGLVTYNIVIDGLARLGSMESAKELYDEMVDKGIIPDEITHSS 485

Query: 472 LKKAF 476
           L   F
Sbjct: 486 LTWGF 490



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 86/215 (40%), Gaps = 3/215 (1%)

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN 325
           RGK +  A + + VM  ++  P     +N +   ++      A +  + MV  G   +P+
Sbjct: 143 RGK-LTVAARLIDVMARKSQIPHFPSCTNLIRGFIRKGLVDEACKTLNKMVMSGG--VPD 199

Query: 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 385
            I YN VIG LC N  + +     + M   G  PD++TYN I  CL      ++   F+ 
Sbjct: 200 TITYNMVIGGLCKNGRLRSALDLVEDMSLSGCSPDAITYNSIIRCLFDKGNFNQAVNFWR 259

Query: 386 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
           + ++    P  +     I ++        A+E+   +   G  P   + N L+      G
Sbjct: 260 DQLRKGCPPYLITYTVLIELVCKYCGAARALEVLEDMAMEGCYPDIVTYNSLVNLTSKQG 319

Query: 446 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 480
           +  D       +L+  +    VT + L  +  N  
Sbjct: 320 KYEDTALVILNLLSHGMQPNAVTYNTLIHSLINHG 354


>gi|359476104|ref|XP_003631789.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Vitis vinifera]
          Length = 877

 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 82/354 (23%), Positives = 164/354 (46%), Gaps = 8/354 (2%)

Query: 143 GVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRA 202
           GV ++ T+  +    C  GK DEA    D M   G+  +VV+ N ++   CR+ N    +
Sbjct: 465 GVANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMAS 524

Query: 203 LEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI 262
             F + + + + P+  +++IL++G  K+G+ E+A   F +M+      P     + T + 
Sbjct: 525 SVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLS-LNIAPTD-FTFNTIIN 582

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL 322
            L +  Q+ EA   L+    E   P+   +++ +D  +K  +   A+ ++  M   G + 
Sbjct: 583 GLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVS- 641

Query: 323 MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
            PN++ Y ++I   C ++ +D   +  D+M   G   D   Y+ + +   K + +   + 
Sbjct: 642 -PNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQD 700

Query: 383 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE-ASANELLVGL 441
            F E+++    P  +   + I+   D +  E A+ +W   + N  +P +  +   L+ GL
Sbjct: 701 LFFELLEVGLSPNRIVYNSMISGFRDLNNMEAAL-VWYKKMINDRIPCDLGTYTTLIDGL 759

Query: 442 RNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLERR 493
              GRL        EML++ I+   +T H L     N+ +  + R I + ++R+
Sbjct: 760 LKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRK 813



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 83/386 (21%), Positives = 158/386 (40%), Gaps = 44/386 (11%)

Query: 98  AVDFFRWAG-RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFD 155
           A ++FR    RG +L   A+++++  + K          +  MKE G V S  TF S+  
Sbjct: 279 AEEYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGLELLEEMKERGWVPSEATFTSVIV 338

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVD 214
           +    G   EA+   + M   G   ++V   SL+   C Q N  S AL   N++ +  + 
Sbjct: 339 ACVAQGNMVEALRLKEEMINCGKPMNLVVATSLMKGYCAQGNLDS-ALNLFNKITEDGLF 397

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           P+  ++++L+EG    GN+E+A++ + +M  +    P  V    + L   ++    +EA 
Sbjct: 398 PNKVTYSVLIEGCCNSGNIEKASELYTQM--KLNGIPPSVFNVNSLLRGYLKAPLWEEAS 455

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
           K                F  A+D  V                        N+  YN ++ 
Sbjct: 456 KL---------------FDEAVDCGVA-----------------------NIFTYNIMMS 477

Query: 335 LLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
            LC    +D      D MV  G  P+ ++YN +     +   +      F +M+  + +P
Sbjct: 478 WLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKP 537

Query: 395 TPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 454
             +  +  I       + E A+++++ +L   I P + + N ++ GL  +G++S+ R   
Sbjct: 538 NVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKL 597

Query: 455 EEMLNRRILIYEVTMHKLKKAFYNES 480
           +  L    +   +T + +   F  E 
Sbjct: 598 KNFLEEGFIPSCMTYNSIVDGFIKEG 623



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 72/335 (21%), Positives = 150/335 (44%), Gaps = 4/335 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T++ + D     G  ++A+  FD M    +       N++++ +C+    +    +  N 
Sbjct: 541 TYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNF 600

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           +++   P   ++  +++G+ KEGN++ A   + EM E F  +P +V+ Y + +    +  
Sbjct: 601 LEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCE-FGVSP-NVVTYTSLINGFCKSN 658

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           ++D ALK    M+ +     +  +S  +D   K  D   A  L+  ++ +G  L PN I+
Sbjct: 659 RIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVG--LSPNRIV 716

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           YN++I    + ++++    ++ +M+      D  TY  + + L+K  R+      + EM+
Sbjct: 717 YNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEML 776

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
                P  +     +  L +  + E A +I   +    + P     N L+ G    G L 
Sbjct: 777 SKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLK 836

Query: 449 DVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSM 483
           +     +EML+R ++  +VT   L    +   RS+
Sbjct: 837 EAFTLHDEMLDRGLVPDDVTYDILINGKFKGDRSL 871


>gi|15217756|ref|NP_171744.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806504|sp|Q9FZ19.2|PPR5_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g02420
 gi|332189307|gb|AEE27428.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 491

 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 85/371 (22%), Positives = 168/371 (45%), Gaps = 22/371 (5%)

Query: 67  DIESALACTGIIPTPDLVHEVLQ---LSYDSPSSAVDFFRWAG--RGQRLSPYAWNLMVD 121
           +++ +L+ +GI  + DL+  VL+    S+ +P   ++F+R+A   RG   S ++ + M+ 
Sbjct: 57  ELKESLSSSGIHLSKDLIDRVLKRVRFSHGNPIQTLEFYRYASAIRGFYHSSFSLDTMLY 116

Query: 122 VLGKNGRFEQMWNA-VRVMKEDGVLSLPTFASIF----DSYCGAGKYDEAVMSFDVMSMH 176
           +LG+N +F+Q+W   +   ++D  L  P    +        C   +  E+   F  +   
Sbjct: 117 ILGRNRKFDQIWELLIETKRKDRSLISPRTMQVVLGRVAKLCSVRQTVESFWKFKRLVPD 176

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA 236
               D    N+LL  +C QE   + A    + +K    PD  +F ILL GW+     E  
Sbjct: 177 FF--DTACFNALLRTLC-QEKSMTDARNVYHSLKHQFQPDLQTFNILLSGWKSSEEAEAF 233

Query: 237 NKTF-GEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
            +   G+ ++     P+ V+ Y + +    + +++++A K +  M+ E   P +  ++  
Sbjct: 234 FEEMKGKGLK-----PD-VVTYNSLIDVYCKDREIEKAYKLIDKMREEEETPDVITYTTV 287

Query: 296 LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
           +  L  +     A ++   M   G    P++  YNA I   C    + +  +  D+MV  
Sbjct: 288 IGGLGLIGQPDKAREVLKEMKEYG--CYPDVAAYNAAIRNFCIARRLGDADKLVDEMVKK 345

Query: 356 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 415
           G  P++ TYN+ F  L     +    + +  M+ NE  P   +C   I M    ++ ++A
Sbjct: 346 GLSPNATTYNLFFRVLSLANDLGRSWELYVRMLGNECLPNTQSCMFLIKMFKRHEKVDMA 405

Query: 416 IEIWNYILENG 426
           + +W  ++  G
Sbjct: 406 MRLWEDMVVKG 416


>gi|224111362|ref|XP_002315826.1| predicted protein [Populus trichocarpa]
 gi|222864866|gb|EEF01997.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 94/384 (24%), Positives = 171/384 (44%), Gaps = 10/384 (2%)

Query: 98  AVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIF 154
           A +FFR   + + L P   +++ ++D L K G  +        M   G+L    T++S+ 
Sbjct: 221 AFEFFREM-KDKDLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLI 279

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-V 213
           D+ C AG   EA M  D M    V+ ++V   +LL  +C +E   + A E    + K  V
Sbjct: 280 DANCKAGNLGEAFMLADEMLQEHVDLNIVTYTTLLDGLC-EEGMMNEAEELFRAMGKAGV 338

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
            P+  ++  L+ G  K  ++++A + F EM E+ +  P+ +L + T +  L    +++E 
Sbjct: 339 TPNLQAYTALIHGHIKVRSMDKAMELFNEMREK-DIKPD-ILLWGTIVWGLCSESKLEEC 396

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
              +  MK          ++  +D   K  + T A+ L + M  +G  +   ++ + A+I
Sbjct: 397 KIIMTEMKESGIGANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEV--TVVTFCALI 454

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
             LC    V     +F +M  H   P+   Y  + + L KN  + + +K F EM      
Sbjct: 455 DGLCKRGLVQEAIYYFGRMPDHDLQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMI 514

Query: 394 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 453
           P  +     I   L     + A+ + N ++E GI     +   L+ GL   G++   R+F
Sbjct: 515 PDKIAYTAMIDGNLKHGNFQEALNMRNKMMEMGIELDLYAYTSLVWGLSQCGQVQQARKF 574

Query: 454 AEEMLNRRILIYEVTMHKLKKAFY 477
             EM+ + I+  E    +L +  Y
Sbjct: 575 LAEMIGKGIIPDETLCTRLLRKHY 598



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 94/427 (22%), Positives = 178/427 (41%), Gaps = 44/427 (10%)

Query: 100 DFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSY 157
           DFFR   G G   + + +N+M+  + K G      +    MK+ G+   + T+ ++ D Y
Sbjct: 118 DFFRDMVGAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDGY 177

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPD 216
              G  DE+V  F+ M   G E DV+  N+L+++ C+ +    RA EF   +K K + P+
Sbjct: 178 GKIGLLDESVCLFEEMKFMGCEPDVITYNALINSFCKFKGML-RAFEFFREMKDKDLKPN 236

Query: 217 GDSFAILLEGWEKEGNVEEANKTF-------------------------GEMVERF---- 247
             S++ L++   KEG ++ A K F                         G + E F    
Sbjct: 237 VISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGEAFMLAD 296

Query: 248 EWNPEHV----LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303
           E   EHV    + Y T L  L     ++EA +  R M      P L+ ++  +   +K+ 
Sbjct: 297 EMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVR 356

Query: 304 DSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLT 363
               A++L++ M     ++ P+++++  ++  LC+   ++       +M   G   + + 
Sbjct: 357 SMDKAMELFNEMREK--DIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGANPVI 414

Query: 364 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 423
           Y  + +   K     E      EM     + T +     I  L      + AI  +  + 
Sbjct: 415 YTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAIYYFGRMP 474

Query: 424 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR-----RILIYEVTMHKLKKAFYN 478
           ++ + P  A    L+ GL     + D ++  +EM ++     +I    +    LK   + 
Sbjct: 475 DHDLQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMIDGNLKHGNFQ 534

Query: 479 ESRSMRD 485
           E+ +MR+
Sbjct: 535 EALNMRN 541



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 92/402 (22%), Positives = 174/402 (43%), Gaps = 14/402 (3%)

Query: 82  DLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYA-WNLMVDVLGKNGRFEQMWNAVRVMK 140
           +++ E++  S+  P S V    W  R   +  +  ++ +  VL + G  E        M 
Sbjct: 30  NILKELVLSSWVLPGSDVFEILWTTRNVCVPGFGVFDALFSVLVELGMLEAAGQCFLRMT 89

Query: 141 EDGVLSLPTFASIF-DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ- 198
           +  VL      + F      AG+ D +   F  M   G+   V   N ++  +C++ +  
Sbjct: 90  KFRVLPKARSCNAFLHRLSKAGEGDLSRDFFRDMVGAGIAPTVFTYNIMIGHVCKEGDML 149

Query: 199 TSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
           T+R+L    ++KK+ + PD  ++  L++G+ K G ++E+   F EM  +F      V+ Y
Sbjct: 150 TARSL--FEQMKKMGLTPDIVTYNTLIDGYGKIGLLDESVCLFEEM--KFMGCEPDVITY 205

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317
              + +  + K +  A +F R MK ++  P +  +S  +D L K      A++ +  M  
Sbjct: 206 NALINSFCKFKGMLRAFEFFREMKDKDLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTR 265

Query: 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
           +G  L+PN   Y+++I   C   ++   F   D+M+      + +TY  + + L +   +
Sbjct: 266 VG--LLPNEFTYSSLIDANCKAGNLGEAFMLADEMLQEHVDLNIVTYTTLLDGLCEEGMM 323

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 437
           +E E+ F  M K    P        I   +     + A+E++N + E  I P       +
Sbjct: 324 NEAEELFRAMGKAGVTPNLQAYTALIHGHIKVRSMDKAMELFNEMREKDIKPDILLWGTI 383

Query: 438 LVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVTMHKLKKA 475
           + GL +  +L + +    EM    I    +IY   M    KA
Sbjct: 384 VWGLCSESKLEECKIIMTEMKESGIGANPVIYTTLMDAYFKA 425



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 119/281 (42%), Gaps = 4/281 (1%)

Query: 200 SRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYET 259
           S   E L   + +  P    F  L     + G +E A + F  M  +F   P+   +   
Sbjct: 45  SDVFEILWTTRNVCVPGFGVFDALFSVLVELGMLEAAGQCFLRMT-KFRVLPK-ARSCNA 102

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG 319
           FL  L +  + D +  F R M G    PT+  ++  +  + K  D   A  L++ M  +G
Sbjct: 103 FLHRLSKAGEGDLSRDFFRDMVGAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMG 162

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
             L P+++ YN +I        +D     F++M F G  PD +TYN +     K K +  
Sbjct: 163 --LTPDIVTYNTLIDGYGKIGLLDESVCLFEEMKFMGCEPDVITYNALINSFCKFKGMLR 220

Query: 380 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 439
             +FF EM   + +P  ++ +T I  L      ++AI+ +  +   G+LP E + + L+ 
Sbjct: 221 AFEFFREMKDKDLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLID 280

Query: 440 GLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 480
                G L +    A+EML   + +  VT   L      E 
Sbjct: 281 ANCKAGNLGEAFMLADEMLQEHVDLNIVTYTTLLDGLCEEG 321


>gi|12320851|gb|AAG50561.1|AC073506_3 hypothetical protein [Arabidopsis thaliana]
          Length = 802

 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 100/424 (23%), Positives = 169/424 (39%), Gaps = 49/424 (11%)

Query: 81  PDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWNAVRV 138
           P  V  VL+ S D    A+ FF WA R  R    P  +  M++VL K    +     + +
Sbjct: 174 PSQVCAVLR-SQDDERVALKFFYWADRQWRYRHDPMVYYSMLEVLSKTKLCQGSRRVLVL 232

Query: 139 MKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           MK  G+   P  F+ +  SY  AG+  +A+    +M   GVE +++  N+ +    R  N
Sbjct: 233 MKRRGIYRTPEAFSRVMVSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRA-N 291

Query: 198 QTSRALEFLNRVK------------------------------------KIVDPDGDSFA 221
           +  +AL FL R++                                    K   PD  S+ 
Sbjct: 292 RLEKALRFLERMQVVGIVPNVVTYNCMIRGYCDLHRVEEAIELLEDMHSKGCLPDKVSYY 351

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            ++    KE  + E      +M +     P+ V  Y T +  L +    DEAL FL+  +
Sbjct: 352 TIMGYLCKEKRIVEVRDLMKKMAKEHGLVPDQV-TYNTLIHMLTKHDHADEALWFLKDAQ 410

Query: 282 GENCFPTLKF-FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
            E  F   K  +S  +  L K    + A  L + M     +  P+++ Y AV+   C   
Sbjct: 411 -EKGFRIDKLGYSAIVHALCKEGRMSEAKDLINEM-----DCPPDVVTYTAVVNGFCRLG 464

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
           +VD   +    M  HG  P++++Y  +   + +  +  E  +  +   ++ W P  +  +
Sbjct: 465 EVDKAKKLLQVMHTHGHKPNTVSYTALLNGMCRTGKSLEAREMMNMSEEHWWSPNSITYS 524

Query: 401 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
             +  L    +   A ++   ++  G  P     N LL  L   GR  + R+F EE LN+
Sbjct: 525 VIMHGLRREGKLSEACDVVREMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNK 584

Query: 461 RILI 464
              I
Sbjct: 585 GCAI 588



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 98/472 (20%), Positives = 189/472 (40%), Gaps = 65/472 (13%)

Query: 76  GIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQR--LSP--YAWNLMVDVLGKNGRFEQ 131
           GI  TP+    V+ +SY       D  +     QR  + P     N  +DV  +  R E+
Sbjct: 237 GIYRTPEAFSRVM-VSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRLEK 295

Query: 132 MWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS 190
               +  M+  G++ ++ T+  +   YC   + +EA+   + M   G   D V+  +++ 
Sbjct: 296 ALRFLERMQVVGIVPNVVTYNCMIRGYCDLHRVEEAIELLEDMHSKGCLPDKVSYYTIMG 355

Query: 191 AICRQENQTSRALEFLNRVKKIVD-----PDGDSFAILLEGWEKEGNVEEA--------N 237
            +C+++    R +E  + +KK+       PD  ++  L+    K  + +EA         
Sbjct: 356 YLCKEK----RIVEVRDLMKKMAKEHGLVPDQVTYNTLIHMLTKHDHADEALWFLKDAQE 411

Query: 238 KTF-----------------GEMVERFEW-----NPEHVLAYETFLITLIRGKQVDEALK 275
           K F                 G M E  +       P  V+ Y   +    R  +VD+A K
Sbjct: 412 KGFRIDKLGYSAIVHALCKEGRMSEAKDLINEMDCPPDVVTYTAVVNGFCRLGEVDKAKK 471

Query: 276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGL 335
            L+VM      P    ++  L+ + +   S  A ++ ++     ++  PN I Y+ ++  
Sbjct: 472 LLQVMHTHGHKPNTVSYTALLNGMCRTGKSLEAREMMNMSEEHWWS--PNSITYSVIMHG 529

Query: 336 LCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 395
           L     +        +MV  G FP  +  N++ + L ++ R HE  KF  E +       
Sbjct: 530 LRREGKLSEACDVVREMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAIN 589

Query: 396 PLNCATAITMLLDADEPEIAIEIWN--YILENGILPLEASANELLVGLRNLGRLSDVRRF 453
            +N  T I      DE + A+ + +  Y++         +   L+  L   GR+++    
Sbjct: 590 VVNFTTVIHGFCQNDELDAALSVLDDMYLINKHADVFTYTT--LVDTLGKKGRIAEATEL 647

Query: 454 AEEMLNRRI----LIYEVTMHKLKKAFYNESRSMRDIFDSLER-----RCKT 496
            ++ML++ I    + Y   +H+     Y +   + D+   LE+     +C+T
Sbjct: 648 MKKMLHKGIDPTPVTYRTVIHR-----YCQMGKVDDLVAILEKMISRQKCRT 694



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 72/166 (43%), Gaps = 7/166 (4%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDV 172
           + +  +VD LGK GR  +    ++ M   G+   P T+ ++   YC  GK D+ V   + 
Sbjct: 626 FTYTTLVDTLGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMGKVDDLVAILE- 684

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD-PDGDSFAILLEGWEKEG 231
             M   ++     N ++  +C    +   A   L +V +     D  +   L+EG+ K+G
Sbjct: 685 -KMISRQKCRTIYNQVIEKLCVL-GKLEEADTLLGKVLRTASRSDAKTCYALMEGYLKKG 742

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
               A K    M  R    P+  +  +     +++GK VDEA K +
Sbjct: 743 VPLSAYKVACRMFNR-NLIPDVKMCEKLSKRLVLKGK-VDEADKLM 786


>gi|357148528|ref|XP_003574800.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
           mitochondrial-like [Brachypodium distachyon]
          Length = 464

 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 155/374 (41%), Gaps = 16/374 (4%)

Query: 81  PDLVHEVLQLSYDS-PSSAVDFFRWAGRGQRLSPYA--WNLMVDVLGKNGRFEQMWNAVR 137
           PDL   V++ +  + P  A  F  W       SP A  ++ ++  L +   F  +W    
Sbjct: 82  PDLALRVIKAAAPAEPLHAARFLAWLRAKPNFSPSAEHFDALLLPLARARLFTHLWTQAS 141

Query: 138 VMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
            M+  G+ LS  TF+++  SY  +   ++AV  F+ +   G  Q     N+LL A+C   
Sbjct: 142 DMRALGLPLSPATFSAVISSYGHSRLPEQAVEVFNRLPHFGCPQTTEVYNALLDALCSNG 201

Query: 197 NQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
           N    A + L R+ +K V PD  +F+ L++ W   G + EA     +M  R    P  V 
Sbjct: 202 NFAG-AYKLLRRMARKGVAPDRATFSTLVDAWCASGKLREAQAFLDDMASRGFRPP--VR 258

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
             +  +  L+R  +++EA  F      E   P +  F++    L    D   AV L    
Sbjct: 259 GRDLLVDGLVRAGRLEEAKAFAVRFTKEGVLPDVATFNSLAQALCDAGDVKFAVGLLADA 318

Query: 316 VGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 375
              G  L P++  Y  ++  +     ++  FR F   V  G  P    Y  I + L K  
Sbjct: 319 SSRG--LCPDISTYKVMLPAVAKAGQIEEAFRLFYAAVEDGHRPFPSLYAAIVKALCKAG 376

Query: 376 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL---ENGILPLEA 432
           R  +   FF +M      P        + M +        ++  NY++   E G  P   
Sbjct: 377 RFGDAFAFFGDMKSKGHPPNRPVYVMLVKMCVRGGR---FLDAANYLVEMSEAGFAPRVP 433

Query: 433 SANELLVGLRNLGR 446
           + N ++ GLR+LG+
Sbjct: 434 TFNAVVDGLRHLGK 447


>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
          Length = 609

 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 140/320 (43%), Gaps = 14/320 (4%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+  + +  C  G+ DEA+   + M  +G + +V+  N +L ++C             + 
Sbjct: 119 TYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDM 178

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH-----VLAYETFLIT 263
           ++K   P   +F IL+    ++G         G  ++  E  P H      L+Y   L  
Sbjct: 179 LRKGCSPSVVTFNILINFLCRQG-------LLGRAIDILEKMPMHGCTPNSLSYNPLLHG 231

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLM 323
             + K++D A+++L +M    C+P +  ++  L  L K      AV++ + +   G +  
Sbjct: 232 FCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCS-- 289

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           P LI YN VI  L      +   +  D+M   G  PD +TY+ +   L +  +V E  KF
Sbjct: 290 PVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKF 349

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
           FH++     +P  +   + +  L  + + + AI+   Y++     P EA+   L+ G+  
Sbjct: 350 FHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAY 409

Query: 444 LGRLSDVRRFAEEMLNRRIL 463
            G   +      E+ +R ++
Sbjct: 410 EGLAKEALDLLNELCSRGLV 429



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 148/352 (42%), Gaps = 7/352 (1%)

Query: 144 VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRAL 203
             SL  F+    + C      +A+   D M   G + DVV  N L++ IC+ E +   A+
Sbjct: 79  CFSLSGFSFYVQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICK-EGRLDEAI 137

Query: 204 EFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI 262
           +FLN +      P+  +  I+L      G   +A K   +M+ R   +P  V+ +   + 
Sbjct: 138 KFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDML-RKGCSPS-VVTFNILIN 195

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL 322
            L R   +  A+  L  M    C P    ++  L    K      A++  DIMV  G   
Sbjct: 196 FLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRG--C 253

Query: 323 MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
            P+++ YN ++  LC +  VD      +Q+   G  P  +TYN + + L K  +     K
Sbjct: 254 YPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIK 313

Query: 383 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 442
              EM +   +P  +  ++ ++ L    + + AI+ ++ +   GI P   + N +++GL 
Sbjct: 314 LLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLC 373

Query: 443 NLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRC 494
              +      F   M+++R    E T   L +    E  + ++  D L   C
Sbjct: 374 KSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLA-KEALDLLNELC 424



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 70/309 (22%), Positives = 142/309 (45%), Gaps = 10/309 (3%)

Query: 195 QENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH 253
           +E+   +A++ L+ ++ K   PD  ++ +L+ G  KEG ++EA K    M   +   P +
Sbjct: 94  KESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNM-PSYGCQP-N 151

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
           V+ +   L ++    +  +A K L  M  + C P++  F+  ++ L +      A+ + +
Sbjct: 152 VITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILE 211

Query: 314 IMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 373
            M   G    PN + YN ++   C    +D    + D MV  G +PD +TYN +   L K
Sbjct: 212 KMPMHG--CTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCK 269

Query: 374 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 433
           + +V    +  +++      P  +   T I  L    + E AI++ + +   G+ P   +
Sbjct: 270 DGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIIT 329

Query: 434 ANELLVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVTMHKLKKAFYNESRSMRDIFDS 489
            + L+ GL   G++ +  +F  ++    I    + Y   M  L K+   + R++  +   
Sbjct: 330 YSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTD-RAIDFLAYM 388

Query: 490 LERRCKTSQ 498
           + +RCK ++
Sbjct: 389 ISKRCKPTE 397


>gi|358346502|ref|XP_003637306.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
 gi|355503241|gb|AES84444.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
          Length = 603

 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 88/388 (22%), Positives = 168/388 (43%), Gaps = 8/388 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDE 165
           RG +    ++ +MV +  K G   +    + VM E G V+   TF  I   + G G    
Sbjct: 199 RGVQPDSISYRVMVVMYCKIGNILEADKWLSVMLERGFVVDNATFTLIISRFSGKGYTTR 258

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILL 224
           A+  F  +   G+E +++    ++  +C++     +A E L   V K   P+  +   L+
Sbjct: 259 ALWYFRRLVDMGLEPNLINFTCMIEGLCKR-GSIKQAFEMLEEMVGKGWKPNVYTHTSLI 317

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           +G  K+G  E+A + F ++V R E +  +VL Y   +    R  +++ A   L  MK + 
Sbjct: 318 DGLCKKGWTEKAFRLFLKLV-RSENHKPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQG 376

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
             P    ++  +D   K  +   A  L ++M   GF+  PNL  YNA++  LC    V  
Sbjct: 377 LVPNTNTYTTLIDGHCKAGNFERAYDLMNLMSSEGFS--PNLCTYNAIVNGLCKRGRVQE 434

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
            ++  +    +G  PD  TYN++     K + + +    F++M+K   QP   +  T I 
Sbjct: 435 AYKMLEDGFQNGLKPDKFTYNILMSEHCKQENIRQALALFNKMLKIGIQPDIHSYTTLIA 494

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 464
           +    +  + +   +   +  GI+P   +   ++ G    G L+   +F   + +     
Sbjct: 495 VFCRENRMKESEMFFEEAVRIGIIPTNKTYTSMICGYCREGNLTLAMKFFHRLSDHGCAP 554

Query: 465 YEVTMHKLKKAFYNESR--SMRDIFDSL 490
             +T   +      +S+    R ++DS+
Sbjct: 555 DSITYGAIISGLCKQSKRDEARSLYDSM 582



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 146/323 (45%), Gaps = 12/323 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSF-DVM 173
           +  M++ L K G  +Q +  +  M   G   ++ T  S+ D  C  G  ++A   F  ++
Sbjct: 278 FTCMIEGLCKRGSIKQAFEMLEEMVGKGWKPNVYTHTSLIDGLCKKGWTEKAFRLFLKLV 337

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
                + +V+   +++S  CR E++ +RA   L+R+K + + P+ +++  L++G  K GN
Sbjct: 338 RSENHKPNVLTYTAMISGYCR-EDKLNRAEMLLSRMKEQGLVPNTNTYTTLIDGHCKAGN 396

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG-ENCFPTLKF 291
            E A      M    E    ++  Y   +  L +  +V EA K L    G +N     KF
Sbjct: 397 FERAYDLMNLMSS--EGFSPNLCTYNAIVNGLCKRGRVQEAYKMLE--DGFQNGLKPDKF 452

Query: 292 FSNAL-DILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
             N L     K  +   A+ L++ M+ IG  + P++  Y  +I + C  + +     FF+
Sbjct: 453 TYNILMSEHCKQENIRQALALFNKMLKIG--IQPDIHSYTTLIAVFCRENRMKESEMFFE 510

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
           + V  G  P + TY  +     +   +    KFFH +  +   P  +     I+ L    
Sbjct: 511 EAVRIGIIPTNKTYTSMICGYCREGNLTLAMKFFHRLSDHGCAPDSITYGAIISGLCKQS 570

Query: 411 EPEIAIEIWNYILENGILPLEAS 433
           + + A  +++ ++E G++P E +
Sbjct: 571 KRDEARSLYDSMIEKGLVPCEVT 593


>gi|9857539|gb|AAG00894.1|AC064879_12 Hypothetical protein [Arabidopsis thaliana]
          Length = 490

 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 85/371 (22%), Positives = 168/371 (45%), Gaps = 22/371 (5%)

Query: 67  DIESALACTGIIPTPDLVHEVLQ---LSYDSPSSAVDFFRWAG--RGQRLSPYAWNLMVD 121
           +++ +L+ +GI  + DL+  VL+    S+ +P   ++F+R+A   RG   S ++ + M+ 
Sbjct: 56  ELKESLSSSGIHLSKDLIDRVLKRVRFSHGNPIQTLEFYRYASAIRGFYHSSFSLDTMLY 115

Query: 122 VLGKNGRFEQMWNA-VRVMKEDGVLSLPTFASIF----DSYCGAGKYDEAVMSFDVMSMH 176
           +LG+N +F+Q+W   +   ++D  L  P    +        C   +  E+   F  +   
Sbjct: 116 ILGRNRKFDQIWELLIETKRKDRSLISPRTMQVVLGRVAKLCSVRQTVESFWKFKRLVPD 175

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA 236
               D    N+LL  +C QE   + A    + +K    PD  +F ILL GW+     E  
Sbjct: 176 FF--DTACFNALLRTLC-QEKSMTDARNVYHSLKHQFQPDLQTFNILLSGWKSSEEAEAF 232

Query: 237 NKTF-GEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
            +   G+ ++     P+ V+ Y + +    + +++++A K +  M+ E   P +  ++  
Sbjct: 233 FEEMKGKGLK-----PD-VVTYNSLIDVYCKDREIEKAYKLIDKMREEEETPDVITYTTV 286

Query: 296 LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
           +  L  +     A ++   M   G    P++  YNA I   C    + +  +  D+MV  
Sbjct: 287 IGGLGLIGQPDKAREVLKEMKEYG--CYPDVAAYNAAIRNFCIARRLGDADKLVDEMVKK 344

Query: 356 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 415
           G  P++ TYN+ F  L     +    + +  M+ NE  P   +C   I M    ++ ++A
Sbjct: 345 GLSPNATTYNLFFRVLSLANDLGRSWELYVRMLGNECLPNTQSCMFLIKMFKRHEKVDMA 404

Query: 416 IEIWNYILENG 426
           + +W  ++  G
Sbjct: 405 MRLWEDMVVKG 415


>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
          Length = 817

 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 91/405 (22%), Positives = 172/405 (42%), Gaps = 43/405 (10%)

Query: 92  YDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPT 149
           Y     A D F   A +GQ    +++N+M++     G    M +   +M  DG+     T
Sbjct: 340 YGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYT 399

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F  +  +Y   G  D+A++ F+ M  HGV+ DVV   ++++A+CR         +F   +
Sbjct: 400 FNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMI 459

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
            + V PD  ++  L++G+   G++ +A +   E++                      G  
Sbjct: 460 DQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMN--------------------NGMH 499

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY 329
           +D                 + FFS+ ++ L KL     A  ++D+ V +G  L P+ ++Y
Sbjct: 500 LD-----------------IVFFSSIINNLCKLGRVMDAQNIFDLTVNVG--LHPDAVVY 540

Query: 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389
           N ++   C    ++   R FD MV  G  P+ + Y  +     K  R+ E    F EM++
Sbjct: 541 NMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQ 600

Query: 390 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 449
              +P+ +  +  I  L +A     A   ++ + E+GI     + N +L GL       +
Sbjct: 601 RGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDE 660

Query: 450 VRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLER 492
                +E+    + I  +T++ +    +   R    +D+F S+ R
Sbjct: 661 AIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISR 705



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 92/415 (22%), Positives = 174/415 (41%), Gaps = 57/415 (13%)

Query: 94  SPSSAVDFF-RWAGRGQR---LSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LS 146
            P+ AV  F R A R Q    LSP  + + +++D   +  R E        +   G+ ++
Sbjct: 89  GPALAVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVN 148

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMH-----GVEQDVVAVNSLLSAICRQ--ENQT 199
           +     + + +C A + DEA+   D++ +H     G   DV + + LL ++C Q    Q 
Sbjct: 149 IIIANHLLEGFCEAKRTDEAL---DIL-LHRTPELGCVPDVFSYSILLKSLCDQGKSGQA 204

Query: 200 SRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYET 259
              L  +     +  P+  ++  +++G+ KEG+V +A   F EMV+R    P  ++ Y +
Sbjct: 205 DDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQR--GIPPDLVTYNS 262

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFP--------------------TLKFF------- 292
            +  L + + +D+A  FLR M  +   P                     ++ F       
Sbjct: 263 VVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHS 322

Query: 293 --------SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
                   S  +  L K      A  ++D M   G N  P++  YN ++        + +
Sbjct: 323 ILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQN--PDVFSYNIMLNGYATKGCLVD 380

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
           +   FD M+  G  PD  T+N++ +       + +    F+EM  +  +P  +   T I 
Sbjct: 381 MTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIA 440

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
            L    + + A+E +N +++ G+ P + + N L+ G    G L   +    E++N
Sbjct: 441 ALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMN 495



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 74/343 (21%), Positives = 148/343 (43%), Gaps = 11/343 (3%)

Query: 109 QRLSPYAW--NLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +R+ P  W  N ++      G++++     + M+   +L  + T + +  S C  GK  E
Sbjct: 286 KRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKE 345

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A   FD M+M G   DV + N +L+    +         F   +   + PD  +F +L++
Sbjct: 346 ARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIK 405

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
            +   G +++A   F EM  R       V+ Y T +  L R  ++D+A++    M  +  
Sbjct: 406 AYANCGMLDKAMIIFNEM--RDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGV 463

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P    ++  +           A +L   ++  G +L  +++ ++++I  LC    V + 
Sbjct: 464 APDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHL--DIVFFSSIINNLCKLGRVMDA 521

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFE--CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
              FD  V  G  PD++ YNM+ +  CL+   ++ +  + F  M+    +P  +   T +
Sbjct: 522 QNIFDLTVNVGLHPDAVVYNMLMDGYCLV--GKMEKALRVFDAMVSAGIEPNVVGYGTLV 579

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 446
                    +  + ++  +L+ GI P     + ++ GL   GR
Sbjct: 580 NGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFEAGR 622



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 120/310 (38%), Gaps = 48/310 (15%)

Query: 190 SAICRQENQTSRALEFLNRVK------KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
           SA CR  +  + A+   NR        +++ P   ++AIL++   +    E A   FG++
Sbjct: 83  SAACR--SGPALAVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQL 140

Query: 244 VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-NCFPTLKFFSNALDILVKL 302
           + R       ++A    L      K+ DEAL  L     E  C P +  +S  L  L   
Sbjct: 141 L-RTGLRVNIIIA-NHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQ 198

Query: 303 NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSL 362
             S  A  L  +M   G    PN++ YN VI       DV+     F +MV  G  PD +
Sbjct: 199 GKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLV 258

Query: 363 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 422
           TYN +   L K + + + E F  +M+     P                        W Y 
Sbjct: 259 TYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNN----------------------WTY- 295

Query: 423 LENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF--YNES 480
                       N L+ G  + G+  +  R  +EM    IL   VT+  L  +   Y + 
Sbjct: 296 ------------NNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKI 343

Query: 481 RSMRDIFDSL 490
           +  RD+FD++
Sbjct: 344 KEARDVFDTM 353



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 132/332 (39%), Gaps = 40/332 (12%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLN 207
           T+A + D    A + + A+  F  +   G+  +++  N LL   C +  +T  AL+  L+
Sbjct: 116 TYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFC-EAKRTDEALDILLH 174

Query: 208 RVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
           R  ++   PD  S++ILL+    +G   +A+     M E                     
Sbjct: 175 RTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAE--------------------- 213

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNL 326
                          G  C P +  ++  +D   K  D   A  L+  MV  G  + P+L
Sbjct: 214 --------------GGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRG--IPPDL 257

Query: 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 386
           + YN+V+  LC    +D    F  QMV     P++ TYN +        +  E  + F E
Sbjct: 258 VTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKE 317

Query: 387 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 446
           M ++   P  +  +  +  L    + + A ++++ +   G  P   S N +L G    G 
Sbjct: 318 MRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGC 377

Query: 447 LSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 478
           L D+    + ML   I     T + L KA+ N
Sbjct: 378 LVDMTDLFDLMLGDGIAPDFYTFNVLIKAYAN 409



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 119/290 (41%), Gaps = 9/290 (3%)

Query: 109 QRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDE 165
           Q ++P  YA+N ++     +G   +    +  +  +G+ L +  F+SI ++ C  G+  +
Sbjct: 461 QGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMD 520

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A   FD+    G+  D V  N L+   C           F   V   ++P+   +  L+ 
Sbjct: 521 AQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVN 580

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR-GKQVDEALKFLRVMKGEN 284
           G+ K G ++E    F EM++R    P  +L Y   +  L   G+ V   +KF   M    
Sbjct: 581 GYCKIGRIDEGLSLFREMLQR-GIKPSTIL-YSIIIDGLFEAGRTVPAKMKF-HEMTESG 637

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
               +  ++  L  L K      A+ L+  +  +  N+  N+I  N +I  +     V+ 
Sbjct: 638 IAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAM--NVKINIITLNTMIDGMFQTRRVEE 695

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
               F  +      P  +TY+++   LIK   V E E  F  M     +P
Sbjct: 696 AKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEP 745



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/236 (21%), Positives = 98/236 (41%), Gaps = 6/236 (2%)

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI 212
           + D YC  GK ++A+  FD M   G+E +VV   +L++  C+          F   +++ 
Sbjct: 543 LMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRG 602

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
           + P    ++I+++G  + G    A   F EM E        +  Y   L  L + +  DE
Sbjct: 603 IKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTE--SGIAMDICTYNIVLRGLFKNRCFDE 660

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFN-LMPNLIMYNA 331
           A+   + ++  N    +   +  +D + +      A    D+   I  + L+P+++ Y+ 
Sbjct: 661 AIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEA---KDLFASISRSRLVPSVVTYSI 717

Query: 332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
           +I  L     V+     F  M   G  P+S   N +   L+K   +     +  ++
Sbjct: 718 MITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAGAYLSKI 773



 Score = 47.0 bits (110), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 106/271 (39%), Gaps = 8/271 (2%)

Query: 43  HLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSY---DSPSSAV 99
           HLD  + SS    +C++     + +I       G+ P   +V+ +L   Y        A+
Sbjct: 499 HLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDA-VVYNMLMDGYCLVGKMEKAL 557

Query: 100 DFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSY 157
             F      G   +   +  +V+   K GR ++  +  R M + G+  S   ++ I D  
Sbjct: 558 RVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGL 617

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG 217
             AG+   A M F  M+  G+  D+   N +L  + +          F       V  + 
Sbjct: 618 FEAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINI 677

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            +   +++G  +   VEEA   F   + R    P  V+ Y   +  LI+   V+EA    
Sbjct: 678 ITLNTMIDGMFQTRRVEEAKDLFAS-ISRSRLVPS-VVTYSIMITNLIKEGLVEEAEDMF 735

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHA 308
             M+   C P  +  ++ +  L+K N+   A
Sbjct: 736 SSMQNAGCEPNSRLLNHVVRELLKKNEIVRA 766



 Score = 40.0 bits (92), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 41/228 (17%), Positives = 94/228 (41%), Gaps = 5/228 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N+++D     G+ E+       M   G+  ++  + ++ + YC  G+ DE +  F  M 
Sbjct: 540 YNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREML 599

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G++   +  + ++  +          ++F    +  +  D  ++ I+L G  K    +
Sbjct: 600 QRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFD 659

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           EA   F E+  R      +++   T +  + + ++V+EA      +      P++  +S 
Sbjct: 660 EAIFLFKEL--RAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSI 717

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
            +  L+K      A  ++  M   G    PN  + N V+  L   +++
Sbjct: 718 MITNLIKEGLVEEAEDMFSSMQNAGCE--PNSRLLNHVVRELLKKNEI 763


>gi|255542990|ref|XP_002512558.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548519|gb|EEF50010.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 511

 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 107/441 (24%), Positives = 189/441 (42%), Gaps = 24/441 (5%)

Query: 50  SSSARIICEILA--HASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR 107
           S+ A I+ EIL   H     +ES+L   GI  +  L+H+ L     +   A+ FF ++  
Sbjct: 36  SNDAEIVSEILLNHHNPFHAMESSLQLHGITLSSSLLHQTLLRLRHNSKIALSFFHYSLS 95

Query: 108 --GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
                ++   +NL++D+L K  +F+  W  +  M ++ +  +  TF  +      AG   
Sbjct: 96  LPSSSVNTTTYNLIIDILSKVRQFDVSWQLIIQMDQNNLQPNSHTFLILIRRLISAGFTR 155

Query: 165 EAVMSFDVMSMHGVEQ-DVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
           +A+ +FD M     E  +      LL  +C+       A+E  N+ K    P+   + +L
Sbjct: 156 QAIRAFDDMESFIAETVNQTHFCFLLDTLCKY-GYIKVAVEVFNKRKFRFLPNVRIYTVL 214

Query: 224 LEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLR-VMK 281
           + GW K G ++ A +   EM E   E N   V+ Y   L  + R  ++    +F R +MK
Sbjct: 215 IYGWCKIGRIDMAERFIREMDEMGIEAN---VVTYNVLLDGICRRAKLQPEGRFERTIMK 271

Query: 282 GENCF---------PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAV 332
            +  F         P +  FS  L +  + +     V    +M  +G  + P +  Y +V
Sbjct: 272 ADKVFDEMRQKGIEPDVTSFSILLHVYSRAHKPQLTVDKLKLMEEMG--ICPTVATYTSV 329

Query: 333 IGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK-NE 391
           +  LC+   +D+     +QMV +G  P++ TYN  F+     K      K + ++ + N 
Sbjct: 330 LKCLCSCGRIDDAEELLEQMVRNGVSPNAATYNCFFKEYRGRKDPETALKLYRKIRQENL 389

Query: 392 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 451
             P+       + M +  +   I  EIWN +  +G  P   S   L+ GL    +     
Sbjct: 390 CDPSVHTYNILLGMFMKLNRFNIVNEIWNDLRSSGSGPDLDSYTLLVHGLCEKQKWQKAC 449

Query: 452 RFAEEMLNRRILIYEVTMHKL 472
           +F  EM+ + +L  + T   L
Sbjct: 450 QFFVEMIEKGLLPQKATFEML 470



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 124/306 (40%), Gaps = 56/306 (18%)

Query: 118 LMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT---FASIFDSYCGAGKYDEAVMSFDVMS 174
            ++D L K G  +    AV V  +     LP    +  +   +C  G+ D A      M 
Sbjct: 179 FLLDTLCKYGYIKV---AVEVFNKRKFRFLPNVRIYTVLIYGWCKIGRIDMAERFIREMD 235

Query: 175 MHGVEQDVVAVNSLLSAICRQ-----ENQTSRALEFLNRV-----KKIVDPDGDSFAILL 224
             G+E +VV  N LL  ICR+     E +  R +   ++V     +K ++PD  SF+ILL
Sbjct: 236 EMGIEANVVTYNVLLDGICRRAKLQPEGRFERTIMKADKVFDEMRQKGIEPDVTSFSILL 295

Query: 225 EGWEKE-----------------------------------GNVEEANKTFGEMVERFEW 249
             + +                                    G +++A +   +MV R   
Sbjct: 296 HVYSRAHKPQLTVDKLKLMEEMGICPTVATYTSVLKCLCSCGRIDDAEELLEQMV-RNGV 354

Query: 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN-CFPTLKFFSNALDILVKLNDSTHA 308
           +P +   Y  F       K  + ALK  R ++ EN C P++  ++  L + +KLN     
Sbjct: 355 SP-NAATYNCFFKEYRGRKDPETALKLYRKIRQENLCDPSVHTYNILLGMFMKLNRFNIV 413

Query: 309 VQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIF 368
            ++W+ +   G    P+L  Y  ++  LC         +FF +M+  G  P   T+ M++
Sbjct: 414 NEIWNDLRSSGSG--PDLDSYTLLVHGLCEKQKWQKACQFFVEMIEKGLLPQKATFEMLY 471

Query: 369 ECLIKN 374
             LI++
Sbjct: 472 AGLIQS 477


>gi|413938979|gb|AFW73530.1| ATP binding protein [Zea mays]
          Length = 551

 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 124/530 (23%), Positives = 214/530 (40%), Gaps = 56/530 (10%)

Query: 17  IPSSSSTTT-SPTSHNPHRPTRPR--------------------FPTHL-DAPYISSSAR 54
           +P+ ++T + SP S  P  PTR +                     PTHL D  + + S R
Sbjct: 20  LPTLAATHSHSPPSFRPLHPTRIQPLRFHLPNPPVRRLSSEHAILPTHLQDERFATLSDR 79

Query: 55  IICEILAHA--SSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQR 110
           I   ++     S++  E+AL   G   T  LV +VL         A  FF WA +  G  
Sbjct: 80  IYDAVIKTGTESNEGTEAALDALGAELTTPLVADVLHRLRYEEKLAFRFFAWASQQDGYS 139

Query: 111 LSPYAWNLMVDVLG----KNGRFEQMWNAVRVMKEDGVLSLPT--FASIFDSYCGAGKYD 164
             P  +N ++D+L     K+ +F  + N +  MK  G  S+P      I  +Y       
Sbjct: 140 HEPTTYNDIIDILSGTRYKSRQFGVLCNVLDHMKRHGSRSVPVEGLLEILRAYTEKHLTH 199

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
              ++           +  A+N LL A C+       A     RVK+ +  + ++++ L 
Sbjct: 200 MRKLAKKRRVRMRTPPETDALNVLLDAFCKC-GMVKEAEAVFGRVKRKLLGNAETYSTLF 258

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPE---HVLAYETFLITLIRGKQVDEALKFLRVMK 281
            GW +  + ++A K   EM++  +  PE   +V A E+F         V EA +    M+
Sbjct: 259 FGWCRARDPKKAMKVLEEMIQ-MKHTPESFTYVAAIESF----CSAGLVSEARELFEFMR 313

Query: 282 GENCF---PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            E      PT K +S  +  L K +      +L   M   G   MP++  Y  +I  +C 
Sbjct: 314 TEGLTVSSPTAKTYSIMIVALAKADRMEECFELLSDMRTCG--CMPDVTTYKDLIEGMCL 371

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
              +D  +R  D+M   G  PD +TYN     L   +   +  +    MI+   +P+   
Sbjct: 372 VGRLDAAYRVLDEMGRAGFPPDIVTYNCFLNVLCSLRNADDALELCERMIEAHCEPSVHT 431

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
               + M  +  E   A++IW  + + G      +   ++ GL + G         +E++
Sbjct: 432 YNMLMMMFFEMGEAHRALDIWLEMDKRGCQRAIDTYEIMIYGLFDCGETEYATALLDEVI 491

Query: 459 NRRILI----YEVTMHKLKK-----AFYNESRSMRDIFD-SLERRCKTSQ 498
           NR + +    ++  M +L       A +  S  MR  ++ ++ RR   +Q
Sbjct: 492 NRDMKLSYKKFDAIMLRLSAVGNLGAIHRLSEHMRKFYNVAMSRRFAITQ 541


>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
          Length = 548

 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 143/320 (44%), Gaps = 4/320 (1%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           + +I DS C   + ++A   F  +   G+  +VV   +L++ +C     +  A    + +
Sbjct: 193 YNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMI 252

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
           KK + P+  +++ LL+ + K G V EA + F EMV R   +P+ ++ Y + +  L    +
Sbjct: 253 KKKITPNVITYSALLDAFVKNGKVLEAKELFEEMV-RMSIDPD-IVTYSSLVNGLCLHDR 310

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY 329
           +DEA +   +M  + C   +  ++  ++   K       ++L+  M   G  L+ N + Y
Sbjct: 311 IDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRG--LVSNTVTY 368

Query: 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389
           N +I       DVD    FF QM F G  PD  TYN++   L  N  + +    F +M K
Sbjct: 369 NTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQK 428

Query: 390 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 449
            E     +   T I  +    + E A  ++  +   G+ P   +   ++ GL   G L +
Sbjct: 429 REMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHE 488

Query: 450 VRRFAEEMLNRRILIYEVTM 469
           V     +M    ++  + T+
Sbjct: 489 VEALYTKMKQEGLMKNDCTL 508



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 146/317 (46%), Gaps = 6/317 (1%)

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206
           L TF  + + +C   +   A+     M   G E D V + SL++  CR+ N+ S A+  +
Sbjct: 120 LYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRR-NRVSDAVSLV 178

Query: 207 NRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
           +++ +I   PD  ++  +++   K   V +A   F E +ER    P +V+ Y   +  L 
Sbjct: 179 DKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKE-IERKGIRP-NVVTYTALVNGLC 236

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN 325
              +  +A + L  M  +   P +  +S  LD  VK      A +L++ MV +  +  P+
Sbjct: 237 NSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSID--PD 294

Query: 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 385
           ++ Y++++  LC +D +D   + FD MV  G   D ++YN +     K KRV +  K F 
Sbjct: 295 IVTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFR 354

Query: 386 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
           EM +       +   T I     A + + A E ++ +   GI P   + N LL GL + G
Sbjct: 355 EMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNG 414

Query: 446 RLSDVRRFAEEMLNRRI 462
            L       E+M  R +
Sbjct: 415 ELEKALVIFEDMQKREM 431



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 71/334 (21%), Positives = 143/334 (42%), Gaps = 41/334 (12%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  F  +  +     KYD  +     M + G+  D+   N +++  C    Q S AL  
Sbjct: 84  SIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFC-CCFQVSLALSI 142

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L ++ K+  +PD  +   L+ G+ +   V +A     +MVE   + P+ ++AY   + +L
Sbjct: 143 LGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVE-IGYKPD-IVAYNAIIDSL 200

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
            + K+V++A  F + ++ +                                      + P
Sbjct: 201 CKTKRVNDAFDFFKEIERKG-------------------------------------IRP 223

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           N++ Y A++  LCN+    +  R    M+     P+ +TY+ + +  +KN +V E ++ F
Sbjct: 224 NVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELF 283

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
            EM++    P  +  ++ +  L   D  + A ++++ ++  G L    S N L+ G    
Sbjct: 284 EEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKA 343

Query: 445 GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 478
            R+ D  +   EM  R ++   VT + L + F+ 
Sbjct: 344 KRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQ 377



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 95/232 (40%), Gaps = 4/232 (1%)

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL 322
           T +R  ++++A+     M     FP++  F+  L  +VKL      + L   M  +G  +
Sbjct: 59  TRLRDIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLG--I 116

Query: 323 MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
             +L  +N VI   C    V        +M+  G  PD +T   +     +  RV +   
Sbjct: 117 RNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVS 176

Query: 383 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 442
              +M++  ++P  +     I  L        A + +  I   GI P   +   L+ GL 
Sbjct: 177 LVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLC 236

Query: 443 NLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSM--RDIFDSLER 492
           N  R SD  R   +M+ ++I    +T   L  AF    + +  +++F+ + R
Sbjct: 237 NSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVR 288



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 74/358 (20%), Positives = 138/358 (38%), Gaps = 50/358 (13%)

Query: 8   PDFVIKNKIIPSSSSTTTSPTSHN-----PHRPTRPRFPTH-------LDAPYISSSARI 55
           PD V  N II S   T     + +       +  RP   T+        ++   S +AR+
Sbjct: 188 PDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARL 247

Query: 56  ICEILAHASSDDIES------ALACTG-IIPTPDLVHEVLQLSYD----SPSSAVD---- 100
           + +++    + ++ +      A    G ++   +L  E++++S D    + SS V+    
Sbjct: 248 LSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCL 307

Query: 101 ----------FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPT 149
                     F     +G      ++N +++   K  R E      R M + G++S   T
Sbjct: 308 HDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVT 367

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           + ++   +  AG  D+A   F  M   G+  D+   N LL  +C         + F +  
Sbjct: 368 YNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQ 427

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
           K+ +D D  ++  ++ G  K G VEEA   F  +  +    P+ ++ Y T +  L     
Sbjct: 428 KREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLK-GLKPD-IVTYTTMMSGLCTKGL 485

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
           + E       MK E             D  +   D T + +L   M+  G+   P+L+
Sbjct: 486 LHEVEALYTKMKQEGLMKN--------DCTLSDGDITLSAELIKKMLSCGY--APSLL 533


>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 592

 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 140/312 (44%), Gaps = 8/312 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T A + +S+C   + D        +   G + D     +L+  +C  E +   AL   ++
Sbjct: 111 TLAIVINSFCHLNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLC-VEGKIGEALHLFDK 169

Query: 209 -VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE-HVLAYETFLITLIR 266
            V +   P+G ++  L+ G  K GN   A +    MV++   N E +V+ Y T +  L +
Sbjct: 170 MVGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQK---NCEPNVITYNTIIDCLFK 226

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNL 326
            +QV+EAL     M  +   P +  +++ +  L K ++  H   L + MV     +MPN+
Sbjct: 227 DRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVD--SKIMPNV 284

Query: 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 386
           +++  ++  LC    V       D M+  G  PD +TY  + +       + E +K F  
Sbjct: 285 VIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDT 344

Query: 387 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 446
           M++    P  ++ +T I         + A+ ++  + +  ++P   + N L+ GL ++GR
Sbjct: 345 MVRKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGR 404

Query: 447 LSDVRRFAEEML 458
           L D      EM+
Sbjct: 405 LRDAIALFHEMV 416



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 132/294 (44%), Gaps = 5/294 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +  +VD L K G      + V VM + GV   + T+ ++ D +C   + DEA   FD M 
Sbjct: 287 FTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMV 346

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G   +V++ ++L++  C+ +        F    ++ + P+  ++  L+ G    G + 
Sbjct: 347 RKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLR 406

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           +A   F EMV   +  P+ ++ Y   L  L + + +D+A+  L+ ++G N  P ++ ++ 
Sbjct: 407 DAIALFHEMVASGQI-PD-LVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNI 464

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
            +D + ++ +   A  L+  +   G  L P++  Y  +I  LC    +    + F +M  
Sbjct: 465 VIDGMCRVGELEAAGDLFSSLSSKG--LHPDVWTYTIMINGLCLQGLLAEATKLFREMNT 522

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
            G  PD  TYN+I    ++N       +   EM+   +          + ML D
Sbjct: 523 DGCSPDDCTYNLITRGFLRNNETLSAIQLLQEMLGRGFSADASTITLIVEMLSD 576



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 126/281 (44%), Gaps = 4/281 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF ++    C  GK  EA+  FD M   G + + V   +L+  +C+  N  +      + 
Sbjct: 146 TFTTLIRGLCVEGKIGEALHLFDKMVGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSM 205

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           V+K  +P+  ++  +++   K+  V EA   F EM+ +   +P +V  Y + +  L +  
Sbjct: 206 VQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEMIAK-GISP-NVSTYNSIIHGLCKFS 263

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           +       +  M      P +  F+  +D L K    T A  + D+M+  G    P+++ 
Sbjct: 264 EWKHVATLMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVE--PDVVT 321

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           Y A++   C   ++D   + FD MV  G  P+ ++Y+ +     K +R+ +    F EM 
Sbjct: 322 YTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMC 381

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
           + E  P  +   T I  L        AI +++ ++ +G +P
Sbjct: 382 QRELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQIP 422



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 142/341 (41%), Gaps = 8/341 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F     +G   +   +N ++  L K   ++ +   +  M +  ++ ++  F ++ D+ C 
Sbjct: 237 FSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDALCK 296

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
            G    A    DVM   GVE DVV   +L+   C +         F   V+K   P+  S
Sbjct: 297 EGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVIS 356

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           ++ L+ G+ K   +++A   F EM +R E  P +++ Y T +  L    ++ +A+     
Sbjct: 357 YSTLINGYCKIQRIDKAMYLFEEMCQR-ELVP-NIVTYNTLIHGLCHVGRLRDAIALFHE 414

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI-GFNLMPNLIMYNAVIGLLCN 338
           M      P L  +   LD L K   + H  Q   ++  I G NL P++  YN VI  +C 
Sbjct: 415 MVASGQIPDLVTYRILLDYLCK---TRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCR 471

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
             +++     F  +   G  PD  TY ++   L     + E  K F EM  +   P    
Sbjct: 472 VGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEATKLFREMNTDGCSPDDCT 531

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 439
                   L  +E   AI++   +L  G    +AS   L+V
Sbjct: 532 YNLITRGFLRNNETLSAIQLLQEMLGRG-FSADASTITLIV 571



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 81/188 (43%), Gaps = 4/188 (2%)

Query: 308 AVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMI 367
           A+ L+D MVG GF   PN + Y  +I  LC   +     R    MV     P+ +TYN I
Sbjct: 163 ALHLFDKMVGEGFQ--PNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTI 220

Query: 368 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 427
            +CL K+++V+E    F EMI     P      + I  L    E +    + N ++++ I
Sbjct: 221 IDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKI 280

Query: 428 LPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL--KKAFYNESRSMRD 485
           +P       L+  L   G ++      + M+ R +    VT   L       +E      
Sbjct: 281 MPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADK 340

Query: 486 IFDSLERR 493
           +FD++ R+
Sbjct: 341 VFDTMVRK 348



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/273 (20%), Positives = 103/273 (37%), Gaps = 24/273 (8%)

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            ++EA  +F  M+      P  V+ +   L ++   K     L   + M       +L  
Sbjct: 54  TIDEALSSFNRMLHM--QPPPSVVDFAKILTSIANMKHYSTVLSLSKQMD------SLGI 105

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLM---------PNLIMYNAVIGLLCNNDDV 342
            S+   + + +N   H  +     V  GF+++         P+   +  +I  LC    +
Sbjct: 106 PSDVYTLAIVINSFCHLNR-----VDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKI 160

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
                 FD+MV  G  P+ +TY  +   L K        +    M++   +P  +   T 
Sbjct: 161 GEALHLFDKMVGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTI 220

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
           I  L    +   A+ I++ ++  GI P  ++ N ++ GL        V     EM++ +I
Sbjct: 221 IDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKI 280

Query: 463 LIYEVTMHKLKKAFYNESRSM--RDIFDSLERR 493
           +   V    L  A   E       D+ D + +R
Sbjct: 281 MPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQR 313


>gi|357138018|ref|XP_003570595.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
           mitochondrial-like [Brachypodium distachyon]
          Length = 548

 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 118/513 (23%), Positives = 212/513 (41%), Gaps = 36/513 (7%)

Query: 17  IPSSSSTTTSPTSHNPHRPTRPRF-------PTHLDAPYISS-SARIICEILA--HASSD 66
           +P + + T  P  H P+     RF       PT+L    ++S S RI   +      S+D
Sbjct: 31  LPLNLTQTPPPRRHLPNLLPVRRFSSGHVLLPTNLQEERVASLSDRIYDAVTGTEEGSND 90

Query: 67  DIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLS--PYAWNLMVDVLG 124
             E+AL   G   T  LV +V+         A  FF WA +         A+N ++D L 
Sbjct: 91  GTEAALDALGAELTTPLVSDVMHRLRYEEKLAFRFFAWASQQDNYEHDQAAYNEVIDTLS 150

Query: 125 ----KNGRFEQMWNAVRVMKEDGVLSLPT--FASIFDSYCGAGKYDEAVMSFDVMSMHGV 178
               K  +F  + + +  MK     S+P     +I  +Y      +   ++         
Sbjct: 151 GTRYKARQFGVLCDVLDHMKRHRTRSVPVEDLLAILRAYTEKHLTNLRKLAKKRRVRMRT 210

Query: 179 EQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANK 238
             +  A+N LL A C+       A     RVK+ +  + +++ IL  GW +  + ++A K
Sbjct: 211 PPETDALNILLDAFCKC-GMVREAETVFGRVKRKLQGNAETYNILFFGWCRARDPKKAMK 269

Query: 239 TFGEMVERFEWNPE---HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
              EM+   +  PE   ++ A ++F    +   +  E  +F+R        PT K +S  
Sbjct: 270 VLEEMI-LMKHAPESFTYIAAIDSFCSAGLVS-EAKELFEFMRTEGSSISSPTAKAYSVM 327

Query: 296 LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
           +  LVK +      +L   M+ +G   MP++  +  +I  +C  D +D  +   ++M   
Sbjct: 328 IVALVKADRMDDCFELISDMIKLG--CMPDVSTFKDLIEGMCLVDKIDTAYFVLEEMGKA 385

Query: 356 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 415
           G  PD +TYN   E L   ++  +  K    MI+   +P+       + M     EP  A
Sbjct: 386 GFPPDIVTYNCFLEVLCNLQKADDALKLCERMIEAHCEPSVHTYNMLMVMFFQMREPHRA 445

Query: 416 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI----YEVTMHK 471
           ++IW  + + G      +   ++ GL + GR  D     +E++N  + +    ++  M +
Sbjct: 446 LDIWLEMDKRGCRRAVDTYEIMIDGLFDCGRTEDATNLLDEVINHDMKLSYKKFDAIMLQ 505

Query: 472 LKK-----AFYNESRSMRDIFD-SLERRCKTSQ 498
           L       A +  S  MR  ++ ++ RR   +Q
Sbjct: 506 LSAVGNLGAIHRLSEHMRKFYNVAMSRRFSITQ 538


>gi|414591138|tpg|DAA41709.1| TPA: hypothetical protein ZEAMMB73_028111 [Zea mays]
          Length = 583

 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 83/376 (22%), Positives = 170/376 (45%), Gaps = 7/376 (1%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEA 166
           G  L+   +N ++D   +     ++   + +M+ +G+  ++ T+  + DS   A    + 
Sbjct: 207 GVSLNALCYNSLLDCYVRQKDDGRVQEILEIMENEGIEATVGTYTILVDSLSTARDISKV 266

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLE 225
              F+ M  + V  DV    ++++A CR  N   RA + L+  V   V+P+  ++ +L+ 
Sbjct: 267 EALFNEMKANNVVGDVYLYTAVINAYCRAGNM-RRAAKVLDECVGNGVEPNERTYGVLIN 325

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+ K G +E A     +M  + +    + + + T +    R   VD+ALK    M+    
Sbjct: 326 GFCKIGQMEAAEMLLADM--QGQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGV 383

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
              +  ++     L ++N    A  L  IM+ +G  ++PN + Y  +I + C + D+   
Sbjct: 384 ELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMG--VVPNYVTYTTLISIHCKDGDMVEA 441

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
            R F +M   GA P  +TYN++ +   K   + E E+F  EM K  + P     A+ +  
Sbjct: 442 RRLFREMAEKGATPSVVTYNVMIDGYTKKGSIREAERFRKEMEKKGFVPDVYTYASLVHG 501

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 465
                + ++A++++  + + G  P   +   L+ GL   GR     +  ++ML   ++  
Sbjct: 502 HCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQLYDDMLKAGLIPD 561

Query: 466 EVTMHKLKKAFYNESR 481
           +     L  + + ++R
Sbjct: 562 DSLYSALVGSLHTDNR 577



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 129/317 (40%), Gaps = 17/317 (5%)

Query: 148 PTFASIF-DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206
           P  AS+  D  C +G+ D+A    D M  HGV  + +  NSLL    RQ++   R  E L
Sbjct: 177 PLAASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDD-GRVQEIL 235

Query: 207 NRVKKIVDPDG-----DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFL 261
               +I++ +G      ++ IL++      ++ +    F EM  +       V  Y   +
Sbjct: 236 ----EIMENEGIEATVGTYTILVDSLSTARDISKVEALFNEM--KANNVVGDVYLYTAVI 289

Query: 262 ITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFN 321
               R   +  A K L    G    P  + +   ++   K+     A  L   M G G  
Sbjct: 290 NAYCRAGNMRRAAKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVG 349

Query: 322 LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 381
           L  N I++N +I   C    VD+  +    M   G   D  TYN +   L +  R+ E +
Sbjct: 350 L--NQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAK 407

Query: 382 KFFHEMIKNEWQPTPLNCATAITM-LLDADEPEIAIEIWNYILENGILPLEASANELLVG 440
              H MI+    P  +   T I++   D D  E A  ++  + E G  P   + N ++ G
Sbjct: 408 TLLHIMIEMGVVPNYVTYTTLISIHCKDGDMVE-ARRLFREMAEKGATPSVVTYNVMIDG 466

Query: 441 LRNLGRLSDVRRFAEEM 457
               G + +  RF +EM
Sbjct: 467 YTKKGSIREAERFRKEM 483


>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 667

 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 163/356 (45%), Gaps = 5/356 (1%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAG 161
           R    G + +   +N +V+ + K+G      + +R M E  V + + T+++I DS C  G
Sbjct: 160 RMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDG 219

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221
             D A+  F  M   G++  +V  NSL+  +C+            +   + + P+  +F 
Sbjct: 220 CIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFN 279

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           +L++ + KEG ++EAN+ + EM+ +   +P + + Y + +       ++ EA   L +M 
Sbjct: 280 VLIDVFVKEGKLQEANELYKEMITK-GISP-NTITYNSLMDGYCMQNRLSEANNMLDLMV 337

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
             NC P +  F++ +    K+      ++L+  +   G  L+ N + Y+ ++   C +  
Sbjct: 338 RNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRG--LVANTVTYSILVQGFCQSGK 395

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
           ++     F +MV  G  PD +TY ++ + L  N ++ +  + F ++ K++     +    
Sbjct: 396 LEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTI 455

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
            I  +    + E A  ++  +   G+ P   +   ++ GL   G LS+      +M
Sbjct: 456 IIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKM 511



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/351 (19%), Positives = 142/351 (40%), Gaps = 40/351 (11%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y  N+M++   +  +    ++ + +VMK        TF ++ +  C   K  EAV+    
Sbjct: 101 YTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLVAR 160

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M  +G + +VV  NS+++ IC+    TS AL+ L ++                    E N
Sbjct: 161 MVENGCQPNVVTYNSIVNGICKS-GDTSLALDLLRKMD-------------------ERN 200

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           V+                   V  Y T + +L R   +D A+   + M+ +    +L  +
Sbjct: 201 VKA-----------------DVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTY 243

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           ++ +  L K       VQL   M      ++PN+I +N +I +      +      + +M
Sbjct: 244 NSLVGGLCKAGKWNDGVQLLKDMTS--RKIIPNVITFNVLIDVFVKEGKLQEANELYKEM 301

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
           +  G  P+++TYN + +      R+ E       M++N   P  +   + I         
Sbjct: 302 ITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRV 361

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
           +  ++++  I + G++    + + L+ G    G+L       +EM++  +L
Sbjct: 362 DEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVL 412



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/301 (21%), Positives = 133/301 (44%), Gaps = 8/301 (2%)

Query: 97  SAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           +A+  F+    +G + S   +N +V  L K G++      ++ M    ++ ++ TF  + 
Sbjct: 223 AAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLI 282

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIV 213
           D +   GK  EA   +  M   G+  + +  NSL+   C Q N+ S A   L+  V+   
Sbjct: 283 DVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQ-NRLSEANNMLDLMVRNNC 341

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
            PD  +F  L++G+ K   V+E  K F ++ +R      + + Y   +    +  +++ A
Sbjct: 342 SPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKR--GLVANTVTYSILVQGFCQSGKLEIA 399

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
            +  + M      P +  +   LD L        A+++++ +     NL  +++MY  +I
Sbjct: 400 EELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNL--DIVMYTIII 457

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
             +C    V++ +  F  +   G  P+ +TY ++   L K   + E      +M ++  +
Sbjct: 458 EGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNE 517

Query: 394 P 394
           P
Sbjct: 518 P 518



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/296 (20%), Positives = 128/296 (43%), Gaps = 11/296 (3%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N+++DV  K G+ ++     + M   G+  +  T+ S+ D YC   +  EA    D+M
Sbjct: 277 TFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLM 336

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
             +    D+V   SL+   C+ +        F    K+ +  +  +++IL++G+ + G +
Sbjct: 337 VRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKL 396

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           E A + F EMV      P+ V+ Y   L  L    ++++AL+    ++       +  ++
Sbjct: 397 EIAEELFQEMVS-LGVLPD-VMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYT 454

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGF-NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
             ++ + K      A   W++   +    + PN++ Y  +I  LC    +        +M
Sbjct: 455 IIIEGMCKGGKVEDA---WNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKM 511

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
              G  P+  TYN +    +++  +    K   EM    +       A++I M++D
Sbjct: 512 EEDGNEPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSAD----ASSIKMVID 563



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/267 (21%), Positives = 115/267 (43%), Gaps = 7/267 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSYCGAGKYDE 165
           +G   +   +N ++D      R  +  N + +M + +    + TF S+   YC   + DE
Sbjct: 304 KGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDE 363

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILL 224
            +  F  +S  G+  + V  + L+   C Q  +   A E    +  + V PD  ++ ILL
Sbjct: 364 GMKLFRKISKRGLVANTVTYSILVQGFC-QSGKLEIAEELFQEMVSLGVLPDVMTYGILL 422

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           +G    G +E+A + F E +++ + N + V+ Y   +  + +G +V++A      +  + 
Sbjct: 423 DGLCDNGKLEKALEIF-EDLQKSKMNLDIVM-YTIIIEGMCKGGKVEDAWNLFCSLPCKG 480

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
             P +  ++  +  L K    + A  L   M   G    PN   YN +I     + D+  
Sbjct: 481 VKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNE--PNDCTYNTLIRAHLRDGDLTA 538

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECL 371
             +  ++M   G   D+ +  M+ + L
Sbjct: 539 SAKLIEEMKSCGFSADASSIKMVIDML 565


>gi|242042646|ref|XP_002459194.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
 gi|241922571|gb|EER95715.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
          Length = 847

 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 153/342 (44%), Gaps = 6/342 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           RG  ++ +  N+ +  L + GR E+    V  M       + T+ ++    C   K  EA
Sbjct: 144 RGMSVNKFTCNIWIRGLCEGGRLEEAVALVESMDAYIAPDVVTYNTLMRGLCKDSKVQEA 203

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL-NRVKKIVDPDGDSFAILLE 225
                 M   G   D    N+++   C+++     A E L + + K   PD  ++  L+ 
Sbjct: 204 AQYLRRMMNQGCIPDDFTYNTIIDGYCKRD-MLQEATELLKDAIFKGFVPDRVTYCSLIN 262

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G   EG+VE A + F E   + +  P+ V+ Y + +  L R   +  AL+ +  M  + C
Sbjct: 263 GLCAEGDVERALELFNEAQAK-DLKPDLVV-YNSLVKGLCRQGLILHALQVMNEMVEDGC 320

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P +  ++  ++ L K+ + + A  + +  +  G+  +P++  +N +I   C    +D+ 
Sbjct: 321 HPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGY--LPDVFTFNTMIDGYCKRLKLDSA 378

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
            +  ++M  +G  PD++TYN +   L K  +  EV + F EMI    +P  +     I  
Sbjct: 379 LQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIEN 438

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
               ++ E A  +   + ++G++P   S N L+ G    G L
Sbjct: 439 FCKINQLEEASGVIVRMSQDGLVPDTISFNTLIHGFCRNGDL 480



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 130/308 (42%), Gaps = 21/308 (6%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LP---TFASIFDSYCGAGKYDEAVMS 169
           + +N++++ L K G      +A  VM +  V   LP   TF ++ D YC   K D A+  
Sbjct: 325 WTYNIVINGLCKMGNIS---DAAVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQL 381

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK 229
            + M M+G+  D +  NS+L+ +C+          F   + K   P+  ++ IL+E + K
Sbjct: 382 VERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCK 441

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
              +EEA+     M +  +      +++ T +    R   +D A    + +  +    T 
Sbjct: 442 INQLEEASGVIVRMSQ--DGLVPDTISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSAT- 498

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVG--IGFNLMPNLIMYNAVIGLLCNNDDVDNVFR 347
              ++  +IL+    S   +Q+ + + G  I     P+L  Y  ++   C   +VD  + 
Sbjct: 499 ---ADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRVLVDGSCKAANVDRAYV 555

Query: 348 FFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 407
              +MV  G  P   T+  +   L  N RV E     H M++    P        +  +L
Sbjct: 556 HLAEMVSKGFVPSMATFGRVLNSLAMNHRVSEAVAIIHIMVRMGVVP------EVVDTIL 609

Query: 408 DADEPEIA 415
             D+ EIA
Sbjct: 610 STDKKEIA 617



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 79/368 (21%), Positives = 145/368 (39%), Gaps = 39/368 (10%)

Query: 126 NGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVA 184
            GR       +R + E G    P  + ++       G   +A   FD M    V  DV  
Sbjct: 58  TGRPHVALRLLRSLPERGCDVKPLAYCTVVRGLYAHGHGYDARHLFDEMLRRDVFPDVAT 117

Query: 185 VNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244
            N++L A+C++ +           +K+ +  +  +  I + G  + G +EEA      +V
Sbjct: 118 FNNVLHALCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAVA----LV 173

Query: 245 ERFE-WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303
           E  + +    V+ Y T +  L +  +V EA ++LR M  + C P    ++  +D   K +
Sbjct: 174 ESMDAYIAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRD 233

Query: 304 DSTHAVQLWDIMVGIGF---------------------------------NLMPNLIMYN 330
               A +L    +  GF                                 +L P+L++YN
Sbjct: 234 MLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYN 293

Query: 331 AVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 390
           +++  LC    + +  +  ++MV  G  PD  TYN++   L K   + +     ++ I  
Sbjct: 294 SLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVK 353

Query: 391 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 450
            + P      T I       + + A+++   +   GI P   + N +L GL   G+  +V
Sbjct: 354 GYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEV 413

Query: 451 RRFAEEML 458
               EEM+
Sbjct: 414 NETFEEMI 421



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/280 (21%), Positives = 117/280 (41%), Gaps = 37/280 (13%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ S+ +  C  G  + A+  F+      ++ D+V  NSL+  +CRQ      AL+ +N 
Sbjct: 256 TYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLCRQ-GLILHALQVMNE 314

Query: 209 -VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            V+    PD  ++ I++ G  K GN+ +A     + + +  + P+ V  + T +    + 
Sbjct: 315 MVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVK-GYLPD-VFTFNTMIDGYCKR 372

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV-------GIGF 320
            ++D AL+ +  M      P    +++ L+ L K   +    + ++ M+        I +
Sbjct: 373 LKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITY 432

Query: 321 N--------------------------LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
           N                          L+P+ I +N +I   C N D+D  +  F ++  
Sbjct: 433 NILIENFCKINQLEEASGVIVRMSQDGLVPDTISFNTLIHGFCRNGDLDGAYLLFQKLDE 492

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
            G    + T+N++         +   EK F EMI   ++P
Sbjct: 493 KGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKP 532



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 69/336 (20%), Positives = 138/336 (41%), Gaps = 10/336 (2%)

Query: 98  AVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           A++ F  A + + L P    +N +V  L + G        +  M EDG    + T+  + 
Sbjct: 273 ALELFNEA-QAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVI 331

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-V 213
           +  C  G   +A +  +   + G   DV   N+++   C++    S AL+ + R+    +
Sbjct: 332 NGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDS-ALQLVERMWMYGI 390

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
            PD  ++  +L G  K G  +E N+TF EM+   +    + + Y   +    +  Q++EA
Sbjct: 391 APDAITYNSVLNGLCKAGKAKEVNETFEEMI--LKGCRPNAITYNILIENFCKINQLEEA 448

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
              +  M  +   P    F+  +    +  D   A  L+  +   G++   +   +N +I
Sbjct: 449 SGVIVRMSQDGLVPDTISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATAD--TFNILI 506

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
           G   +  ++    + F +M+  G  PD  TY ++ +   K   V        EM+   + 
Sbjct: 507 GAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRVLVDGSCKAANVDRAYVHLAEMVSKGFV 566

Query: 394 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
           P+       +  L        A+ I + ++  G++P
Sbjct: 567 PSMATFGRVLNSLAMNHRVSEAVAIIHIMVRMGVVP 602


>gi|125590530|gb|EAZ30880.1| hypothetical protein OsJ_14954 [Oryza sativa Japonica Group]
          Length = 442

 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 87/387 (22%), Positives = 167/387 (43%), Gaps = 19/387 (4%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG       +N++++   K   + Q    + +M+ +G   +  T+  + D  CG G  D+
Sbjct: 36  RGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDD 95

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A+     +  HG +   V  N++L  +C  E            +++   P+  +F +++ 
Sbjct: 96  ALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIY 155

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
              ++G +++A +   +M +       +++ Y   +  L   + VD A+  L  MK   C
Sbjct: 156 SLCRKGLLQQAIQLLEKMSKH--GCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGC 213

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P +  ++  L  L        A +L D M   G   +P+ + +N +IG LC    + + 
Sbjct: 214 KPDIVTYNTLLKGLCSAARWVDAEELMDNMTQNG--CLPDNVTFNTLIGFLCQKGLMVDA 271

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
              F QM   G  P+S+TY+ I   L K  ++ +  + F+EM    + P  +    A   
Sbjct: 272 IEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPDKIYQLLA-EC 330

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI--- 462
           L D D  E AI+    + ++GI P     N +L+GL   G+      FA +++   +   
Sbjct: 331 LNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGK----TEFAIDIMAYMVSSG 386

Query: 463 -----LIYEVTMHKLK-KAFYNESRSM 483
                L Y + +  L  + + NE+R +
Sbjct: 387 CMPDDLTYVILIEGLAYEGYLNEAREL 413



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 136/315 (43%), Gaps = 16/315 (5%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+  +  + C  G+  +A+   D M   G   DVV  N LL A C+      +A+E ++ 
Sbjct: 9   TYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGY-RQAMELIDL 67

Query: 209 VK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH-----VLAYETFLI 262
           ++ +   P+  ++ +L++G   EG+V++A       +E     P H      + Y T L 
Sbjct: 68  MRAEGCTPNNVTYNVLMDGMCGEGDVDDA-------LELLRNLPSHGCKPSTVNYNTVLK 120

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL 322
            L   ++  +A + +  M  ENC P    F+  +  L +      A+QL + M   G   
Sbjct: 121 GLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCT- 179

Query: 323 MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
             N++ YNA+I  LC   +VD       +M  +G  PD +TYN + + L    R  + E+
Sbjct: 180 -ANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEE 238

Query: 383 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 442
               M +N   P  +   T I  L        AIE++  + + G  P   + + ++ GL 
Sbjct: 239 LMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLA 298

Query: 443 NLGRLSDVRRFAEEM 457
              +L        EM
Sbjct: 299 KATKLDQALELFNEM 313



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/269 (22%), Positives = 110/269 (40%), Gaps = 36/269 (13%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF  +  S C  G   +A+   + MS HG   ++V  N++++ +C Q N    A+  L++
Sbjct: 149 TFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRN-VDGAMGLLSK 207

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           +K     PD  ++  LL+G        +A +    M +     P++V  + T +  L + 
Sbjct: 208 MKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNMTQNGCL-PDNV-TFNTLIGFLCQK 265

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFN------ 321
             + +A++  + M  + C P    +S  +  L K      A++L++ M   GFN      
Sbjct: 266 GLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPDKIYQ 325

Query: 322 --------------------------LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
                                     + P+ ++YNA++  LC N   +        MV  
Sbjct: 326 LLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSS 385

Query: 356 GAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           G  PD LTY ++ E L     ++E  +  
Sbjct: 386 GCMPDDLTYVILIEGLAYEGYLNEARELL 414



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 53/260 (20%), Positives = 107/260 (41%), Gaps = 4/260 (1%)

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
           V P+  ++  L+    + G V +A     +M+ R    P+ V+ Y   L    +G+   +
Sbjct: 3   VQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCR-GCAPD-VVTYNILLEATCKGRGYRQ 60

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAV 332
           A++ + +M+ E C P    ++  +D +    D   A++L   +   G    P+ + YN V
Sbjct: 61  AMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCK--PSTVNYNTV 118

Query: 333 IGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 392
           +  LC+ +   +      +M+     P+  T+N++   L +   + +  +   +M K+  
Sbjct: 119 LKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGC 178

Query: 393 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 452
               +     I  L +    + A+ + + +   G  P   + N LL GL +  R  D   
Sbjct: 179 TANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEE 238

Query: 453 FAEEMLNRRILIYEVTMHKL 472
             + M     L   VT + L
Sbjct: 239 LMDNMTQNGCLPDNVTFNTL 258


>gi|46091161|dbj|BAD13709.1| PPR protein [Oryza sativa Indica Group]
          Length = 332

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 136/289 (47%), Gaps = 7/289 (2%)

Query: 109 QRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +R+SP    +N ++  L K    ++    +  M + GV+    T+ SI   +C +G+  E
Sbjct: 41  KRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKE 100

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A++    M   GVE DVV  NSL+  +C+    T     F +  K+ + PD  ++  LL+
Sbjct: 101 AIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQ 160

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+  +G + E +     MV R   +P H + +   +    + ++V+EA+     M+ +  
Sbjct: 161 GYATKGALVEMHGLLDLMV-RNGIHPNHYV-FSILVCAYAKQEKVEEAMLVFSKMRQQGL 218

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P    +   +D+L K      A+  ++ M+  G  L P+ I+YN++I  LC  D  +  
Sbjct: 219 NPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEG--LRPDSIVYNSLIHSLCIFDKWEKA 276

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
              F +M+  G    ++ +N I +   K  RV E  K F  M++   +P
Sbjct: 277 EELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESVKLFDLMVRIGVKP 325



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/262 (20%), Positives = 118/262 (45%), Gaps = 8/262 (3%)

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           PD  S++ ++ G+ KEG++++   T+ EM+++   +P +V+ Y + +  L + + VD+A+
Sbjct: 10  PDVVSYSTVINGFFKEGDLDKTYSTYNEMLDK-RISP-NVVTYNSIIAALCKAQTVDKAM 67

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
           + L  M      P    +++ +           A+     M   G    P+++ YN+++ 
Sbjct: 68  EVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVE--PDVVTYNSLMD 125

Query: 335 LLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
            LC N       + FD M   G  PD  TY  + +       + E+      M++N   P
Sbjct: 126 YLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHP 185

Query: 395 TPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 454
                +  +      ++ E A+ +++ + + G+ P   +   ++  L   GR+ D   + 
Sbjct: 186 NHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYF 245

Query: 455 EEMLNRRI----LIYEVTMHKL 472
           E+M++  +    ++Y   +H L
Sbjct: 246 EQMIDEGLRPDSIVYNSLIHSL 267



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 131/293 (44%), Gaps = 9/293 (3%)

Query: 139 MKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
           M +DG    P   +++++ + +   G  D+   +++ M    +  +VV  NS+++A+C+ 
Sbjct: 1   MADDGGDCPPDVVSYSTVINGFFKEGDLDKTYSTYNEMLDKRISPNVVTYNSIIAALCKA 60

Query: 196 ENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV 254
           +    +A+E L   VK  V PD  ++  ++ G+   G  +EA     +M  R +     V
Sbjct: 61  QT-VDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKM--RSDGVEPDV 117

Query: 255 LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314
           + Y + +  L +  +  EA K    M      P +  +   L              L D+
Sbjct: 118 VTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDL 177

Query: 315 MVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN 374
           MV  G +  PN  +++ ++      + V+     F +M   G  P+++TY  + + L K+
Sbjct: 178 MVRNGIH--PNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKS 235

Query: 375 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 427
            RV +   +F +MI    +P  +   + I  L   D+ E A E++  +L+ GI
Sbjct: 236 GRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGI 288



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 74/181 (40%), Gaps = 2/181 (1%)

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
           G +C P +  +S  ++   K  D       ++ M  +   + PN++ YN++I  LC    
Sbjct: 5   GGDCPPDVVSYSTVINGFFKEGDLDKTYSTYNEM--LDKRISPNVVTYNSIIAALCKAQT 62

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
           VD        MV  G  PD +TYN I      + +  E   F  +M  +  +P  +   +
Sbjct: 63  VDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNS 122

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461
            +  L        A +I++ + + G+ P   +   LL G    G L ++    + M+   
Sbjct: 123 LMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNG 182

Query: 462 I 462
           I
Sbjct: 183 I 183


>gi|242063152|ref|XP_002452865.1| hypothetical protein SORBIDRAFT_04g033840 [Sorghum bicolor]
 gi|241932696|gb|EES05841.1| hypothetical protein SORBIDRAFT_04g033840 [Sorghum bicolor]
          Length = 551

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 116/497 (23%), Positives = 204/497 (41%), Gaps = 35/497 (7%)

Query: 32  PHRPTRPRF------PTHL-DAPYISSSARIICEILAHA--SSDDIESALACTGIIPTPD 82
           P+ P R  F      PTHL D  Y + S RI   ++     S++  E+AL   G   T  
Sbjct: 50  PNPPARRLFSEHTILPTHLQDERYATLSDRIYDAVIKTGAESNEGTEAALDALGTELTTP 109

Query: 83  LVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLG----KNGRFEQMWNAV 136
           LV +VL         A  FF WA    G       +N ++D+L     K+ +F  + N +
Sbjct: 110 LVADVLHRLRYEEKLAFRFFAWASHQDGYSHESATYNDIIDILSGTRYKSRQFGVLCNVL 169

Query: 137 RVMKEDGVLSLPT--FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194
             MK  G  S+P      I  +Y          ++           +  A+N LL A C+
Sbjct: 170 DHMKRHGTRSVPVEDLLEILRAYTEKHLTHMRKLAKKRRVRLRTPPETDALNVLLDAFCK 229

Query: 195 QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE-- 252
                  A     RVK+ +  + ++++IL  GW +  + ++A K   EM++  +  PE  
Sbjct: 230 C-GMVKEAEAVFGRVKRRLLGNAETYSILFFGWCRARDPKKAMKVLEEMIQ-MKHTPESF 287

Query: 253 -HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
            ++ A E+F    +   +  E  +F+R        PT K +S  +  L K +      +L
Sbjct: 288 TYIAAIESFCSAGLVS-EARELFEFMRTEGSTISSPTAKTYSIMIVALAKADRMEECFEL 346

Query: 312 WDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECL 371
              M   G   MP++  Y  +I  +C    +D  +R  ++M   G  PD +TYN     L
Sbjct: 347 LSDMRSCG--CMPDVSTYKELIEGMCLVGKLDAAYRVLEEMGRAGFPPDIVTYNCFLNVL 404

Query: 372 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 431
              ++  +  +    MI+   +P+       + M  +  E   A++IW  +   G     
Sbjct: 405 CSLRKADDALELCERMIEAHCEPSVHTYNMLMVMFFEMGEAHRALDIWLEMDTRGCQRAI 464

Query: 432 ASANELLVGLRNLGRLSDVRRFAEEMLNRRILI----YEVTMHKLKK-----AFYNESRS 482
            +   ++ GL + G+        +E++NR + +    ++  M +L       A +  S  
Sbjct: 465 DTYEIMIDGLFDCGKTEHATSLLDEVINRDMKLSYKKFDAIMLRLSAVGDLGAIHRLSEH 524

Query: 483 MRDIFD-SLERRCKTSQ 498
           MR  ++ ++ RR   +Q
Sbjct: 525 MRRFYNVAMSRRFAITQ 541


>gi|224126843|ref|XP_002319940.1| predicted protein [Populus trichocarpa]
 gi|222858316|gb|EEE95863.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 156/347 (44%), Gaps = 12/347 (3%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF+++ + +C  GK   A+  FDVM   G + +V + + ++  +CR   +T+  ++ L  
Sbjct: 163 TFSTLINGFCIEGKIGRAIELFDVMVARGYKPNVHSYSIIIKGLCRV-GKTTEVIKLLEH 221

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           +K +  +PD   +  +++   K+  V EA   F +M  +       V+ Y + +  L   
Sbjct: 222 MKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCKM--KGTGILPTVVTYTSLIHGLRNL 279

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
            +  EA   L  MKG N  P L  FS  +DI+ K  + + A  +   M  +G    P++ 
Sbjct: 280 GRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVE--PDVA 337

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            YN ++   C   +V    + F+ M+  G  PD  +++++     K KR+ E ++ F EM
Sbjct: 338 TYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEM 397

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
                 P  ++  T I+ L  A  P  A E++  +  NG  P   + + LL  L   G L
Sbjct: 398 THRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQGYL 457

Query: 448 SDV----RRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSL 490
                  R      L   ++ Y + +  + K  Y + +  R++F  L
Sbjct: 458 DQAMGLFRAMENSGLKPDLVTYNIMIDGMCK--YGKFKDARELFAEL 502



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 134/296 (45%), Gaps = 7/296 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F +  G G   +   +  ++  L   GR+++ +  +  MK   ++  L  F+ + D  C 
Sbjct: 254 FCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCK 313

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC-RQENQTSRALEFLNRVKKIVDPDGD 218
            G+  EA +    M+  GVE DV   N+L++  C R E   +R + F   + K   PD  
Sbjct: 314 EGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKV-FEVMISKGRMPDVF 372

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           SF+IL+ G+ K   ++EA + F EM  R    P+ V +Y T +  L + ++  EA +  +
Sbjct: 373 SFSILVNGYCKAKRIDEAKQLFDEMTHR-GLIPDTV-SYNTLISGLCQARRPLEAEELFK 430

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            M      P L  +S  LD L K      A+ L+  M   G  L P+L+ YN +I  +C 
Sbjct: 431 DMHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSG--LKPDLVTYNIMIDGMCK 488

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
                +    F ++   G  P++       + + K   + E  K F +M K++  P
Sbjct: 489 YGKFKDARELFAELSVKGLQPNNWVCTPTIDGVCKGGLLDEAHKAFRQMEKDDCSP 544



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 131/330 (39%), Gaps = 37/330 (11%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  F  +F +      Y   V     M M G+  DV+++  L++  CR           
Sbjct: 90  SIVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHDVLSLTILINCFCRL-CHVDYGFSV 148

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L ++ K+ ++P+  +F+ L+ G+  EG +  A + F  MV R  + P +V +Y   +  L
Sbjct: 149 LGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVAR-GYKP-NVHSYSIIIKGL 206

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF---- 320
            R  +  E +K L  MK   C P +  ++  +D L K      AV ++  M G G     
Sbjct: 207 CRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCKMKGTGILPTV 266

Query: 321 -----------------------------NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
                                        N+MP+L+ ++ +I ++C   +V         
Sbjct: 267 VTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEVSEARVILKT 326

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M   G  PD  TYN +         V E  K F  MI     P   + +  +     A  
Sbjct: 327 MTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFSFSILVNGYCKAKR 386

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGL 441
            + A ++++ +   G++P   S N L+ GL
Sbjct: 387 IDEAKQLFDEMTHRGLIPDTVSYNTLISGL 416



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 93/233 (39%), Gaps = 6/233 (2%)

Query: 232 NVEEANKTFGEMVERFEWNP-EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           N+ +A   F  MV     NP   ++ +      L+R K     +   + M+       + 
Sbjct: 71  NINDALSAFNHMVNT---NPLPSIVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHDVL 127

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
             +  ++   +L    +   +   ++ +G  L PN+I ++ +I   C    +      FD
Sbjct: 128 SLTILINCFCRLCHVDYGFSVLGKIIKLG--LEPNVITFSTLINGFCIEGKIGRAIELFD 185

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
            MV  G  P+  +Y++I + L +  +  EV K    M     +P  +   T +  L    
Sbjct: 186 VMVARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDR 245

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
               A+ I+  +   GILP   +   L+ GLRNLGR  +      EM    I+
Sbjct: 246 LVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIM 298


>gi|413921612|gb|AFW61544.1| hypothetical protein ZEAMMB73_526638 [Zea mays]
          Length = 456

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 140/332 (42%), Gaps = 13/332 (3%)

Query: 129 FEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS 187
           F  +W+    M+  G+ LS  TF+++  SY  +   D+AV  F+ +   G  Q     N+
Sbjct: 125 FPHLWSLASDMRGLGLPLSPTTFSAVISSYGHSRLPDQAVEVFNRLPRFGCPQTTEVYNA 184

Query: 188 LLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
           LL A+C   N T  A + L R+ +K V PD  +F+ L++ W   G ++EA     +M  R
Sbjct: 185 LLDALCANGNFTG-AYKLLRRMARKGVAPDRATFSTLVDSWCAAGKLQEAQAFLDDMAGR 243

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
               P  V   +  +  L+R   +++A  F   M  E   P +  F++  + L    D  
Sbjct: 244 GLRPP--VRGRDLLVDGLVRAGHLEQAKAFALRMTKEGILPDVATFNSLAEALCNAGDVD 301

Query: 307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM 366
            AV L       G  L P++  Y  ++  +     ++  FR F   V  G  P    Y  
Sbjct: 302 FAVSLLADASSRG--LCPDISTYKVMLPAVAKVGKIEEAFRLFYAAVEDGHRPFPSLYAA 359

Query: 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL--- 423
           I + L K  R  +   FF +M      P        + M +        +E  NY++   
Sbjct: 360 IIKALCKAGRFADAFAFFGDMKTKGHPPNRPVYVMLVKMCVRGGR---FVEAANYLVEMS 416

Query: 424 ENGILPLEASANELLVGLRNLGRLSDVRRFAE 455
           E G  P   + + ++ GLR+ G+    RR  +
Sbjct: 417 EAGFTPRAPTFSAVVDGLRHCGKHDLARRLEQ 448



 Score = 42.4 bits (98), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 64/172 (37%), Gaps = 5/172 (2%)

Query: 310 QLWDI---MVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM 366
            LW +   M G+G  L P    ++AVI    ++   D     F+++   G    +  YN 
Sbjct: 127 HLWSLASDMRGLGLPLSPT--TFSAVISSYGHSRLPDQAVEVFNRLPRFGCPQTTEVYNA 184

Query: 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 426
           + + L  N       K    M +    P     +T +     A + + A    + +   G
Sbjct: 185 LLDALCANGNFTGAYKLLRRMARKGVAPDRATFSTLVDSWCAAGKLQEAQAFLDDMAGRG 244

Query: 427 ILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 478
           + P     + L+ GL   G L   + FA  M    IL    T + L +A  N
Sbjct: 245 LRPPVRGRDLLVDGLVRAGHLEQAKAFALRMTKEGILPDVATFNSLAEALCN 296


>gi|302758668|ref|XP_002962757.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
 gi|300169618|gb|EFJ36220.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
          Length = 439

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/404 (21%), Positives = 169/404 (41%), Gaps = 49/404 (12%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKE-DGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +++++  L K GR  +       M E   V +L     +  S C AG  D+A+  F  
Sbjct: 4   FTFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGTMDQAMAIF-- 61

Query: 173 MSMHGVE--QDVVAVNSLLSAICRQENQTSRALEFLNRVKK--IVDPDGDSFAILLE--- 225
               G++    V+ +N L++  C  +    +ALE  + ++K   + P+  ++  +++   
Sbjct: 62  ---RGIQCSPSVITLNILINGFCELQ-LLDKALELFHEMEKNFALVPEATTYTAIIKCYC 117

Query: 226 ------------------------------GWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
                                         G+ K   V+EA +   +MVE+    P+ ++
Sbjct: 118 KMDRLDQARQLLEESSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPD-IV 176

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
           A+   +    +  +V EA + L  +    C P    ++  +D   K  + + A+QL+ ++
Sbjct: 177 AWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKVL 236

Query: 316 VGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 375
                +  PN++ +NA+I  LC  D +++ F    QM       D+ TY  + + L K  
Sbjct: 237 SSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQG 296

Query: 376 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 435
           R  EV + F EM++    P+ +   T +     A   + A ++   ++  GI P   +  
Sbjct: 297 RTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYT 356

Query: 436 ELLVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVTMHKLKKA 475
            LL GL   G++     F E++L  R     ++Y   +    KA
Sbjct: 357 VLLEGLFENGKVRTATEFFEKILRERCPPCAVVYSALVRGCCKA 400



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 74/355 (20%), Positives = 159/355 (44%), Gaps = 12/355 (3%)

Query: 98  AVDFFRWAGRGQRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFA--SI 153
           A++ F    +   L P A  +  ++    K  R +Q   A ++++E    S    A  S+
Sbjct: 89  ALELFHEMEKNFALVPEATTYTAIIKCYCKMDRLDQ---ARQLLEESSCCSSDVIAITSV 145

Query: 154 FDSYCGAGKYDEAV-MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI 212
              +C A + DEA  +  D++     + D+VA N ++   C+   +   A E L  +  +
Sbjct: 146 ARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVIIHGFCKA-GRVREAYEMLETLVSM 204

Query: 213 -VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD 271
              P+  ++  L++G+ K GN+ EA + F  +  R      +V+ +   +  L +  +++
Sbjct: 205 GCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLE 264

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA 331
            A + ++ MK  +       ++  +D L K   ++   ++++ M+  G N  P+++ Y  
Sbjct: 265 HAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCN--PSVVTYTT 322

Query: 332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
           ++   C    + +  +    MV  G  PD  TY ++ E L +N +V    +FF ++++  
Sbjct: 323 LVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRER 382

Query: 392 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 446
             P  +  +  +     A   + A++ +  +L+  + P  A+   L+  L   GR
Sbjct: 383 CPPCAVVYSALVRGCCKAALVDEAVKYYVEMLDRRLAPDPATCKLLVEMLCKRGR 437


>gi|302784788|ref|XP_002974166.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
 gi|300158498|gb|EFJ25121.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
          Length = 647

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 155/355 (43%), Gaps = 12/355 (3%)

Query: 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMS 169
           L+ + +N +V  L K  R E+    V+ M E     +L T+ S+ D +   G+ DEA++ 
Sbjct: 252 LTHFTFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQ 311

Query: 170 FDVMSMHGVEQDVVAVNSLLSAIC---RQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
                  G   D V   S++  +C   R E    R  E  NR     +PD  ++A L++G
Sbjct: 312 LKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRG---YEPDAVTYAALIDG 368

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
           + K   + +A++ + +M++         + Y   L  L +  +V EA      M+   C 
Sbjct: 369 FMKAKMIPKAHRVYRQMLQ--SGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCV 426

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346
            T+  +S  +D      + + AV+L+  M+  G    PNL+ YN +I  LC    +   +
Sbjct: 427 ATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCE--PNLVSYNIIIRGLCRAGKLAKAY 484

Query: 347 RFFDQMVFHGAFPDSLTYNMIFECLIKN-KRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
            +F++++     PD  T+N     L +    V +  + F  M+     P   + +  +  
Sbjct: 485 FYFEKLLQRRLCPDVYTFNSFLHGLCQRLDTVGDGVELFESMVSQGTSPNLHSYSILMDG 544

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           +  A   E+ +EI++ ++  G+ P     N L+  L   GR+ +      E+  R
Sbjct: 545 ICRAGGLEVTLEIFHEMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRELERR 599



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 96/393 (24%), Positives = 174/393 (44%), Gaps = 57/393 (14%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +  +VD L K GR ++    +  M E G   +L T+  + D    AG+ +EA   F  M 
Sbjct: 114 YTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDML 173

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-----KKIVDPDGDSFAILLEGWEK 229
            +G   D     +L+S + +   +   AL +LN++      + V+PD     +++     
Sbjct: 174 GNGCRPDAFVYTALISGLAKI-GKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLCA 232

Query: 230 EGNVEEANKTFGEM-----VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            GN+E+A   F E+     +  F +NP         +  L + ++ +EA+ F++ M    
Sbjct: 233 SGNLEDALAYFDELDDSLDLTHFTFNP--------LVAALCKAERTEEAIAFVKKMSERR 284

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
           CFPTL  +++ +D  +KL     A+      V  GF  +P+ + Y ++I  LC    V+ 
Sbjct: 285 CFPTLFTYTSLVDGFLKLGRLDEALLQLKEAVERGF--IPDAVTYTSIIDGLCKLGRVEE 342

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN-------------- 390
               F +M   G  PD++TY  + +  +K K + +  + + +M+++              
Sbjct: 343 GCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILD 402

Query: 391 ---------EWQPTPL-----NC-ATAIT--MLLDADEPE----IAIEIWNYILENGILP 429
                    E   T L      C AT +T   L+D    E     A+E++  +L+ G  P
Sbjct: 403 GLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEP 462

Query: 430 LEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
              S N ++ GL   G+L+    + E++L RR+
Sbjct: 463 NLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRL 495



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 138/320 (43%), Gaps = 17/320 (5%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
            F  + +  C   + DEA    +     G E D V  N  +  +C+ E +   A + L +
Sbjct: 43  AFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAE-RVDDAFQLLKK 101

Query: 209 V-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           + +K   P   ++  L++G  K G ++EA     +MVE+   N   +  Y   +  L + 
Sbjct: 102 MDEKKCLPTTVTYTALVDGLLKAGRLDEAMAILEQMVEK--GNSPTLKTYTVVIDGLSKA 159

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV--GIGFNLMPN 325
            +V+EA +    M G  C P    ++  +  L K+     A+   + MV  G    + P+
Sbjct: 160 GRVEEARRIFVDMLGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGVEPD 219

Query: 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSL-----TYNMIFECLIKNKRVHEV 380
           ++++N VI  LC + ++++   +FD++       DSL     T+N +   L K +R  E 
Sbjct: 220 VVIHNLVIRQLCASGNLEDALAYFDEL------DDSLDLTHFTFNPLVAALCKAERTEEA 273

Query: 381 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 440
             F  +M +    PT     + +   L     + A+      +E G +P   +   ++ G
Sbjct: 274 IAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQLKEAVERGFIPDAVTYTSIIDG 333

Query: 441 LRNLGRLSDVRRFAEEMLNR 460
           L  LGR+ +      EM NR
Sbjct: 334 LCKLGRVEEGCERFHEMRNR 353



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 108/236 (45%), Gaps = 21/236 (8%)

Query: 181 DVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTF 240
           D     +LL+ +C+   Q  RA+  L+ +     PD  +F +++ G  +E  ++EA    
Sbjct: 8   DTRVCTALLNGLCKT-GQLDRAMLLLDEMP--CSPDMVAFTVVINGLCREKRLDEAFSVL 64

Query: 241 GEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV 300
            E   R    P++V  Y  F+  L + ++VD+A + L+ M  + C PT   ++  +D L+
Sbjct: 65  -ERAVRAGCEPDYV-TYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLL 122

Query: 301 KLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPD 360
           K      A+ + + MV  G +  P L  Y  VI  L     V+   R F  M+ +G  PD
Sbjct: 123 KAGRLDEAMAILEQMVEKGNS--PTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPD 180

Query: 361 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 416
           +  Y  +   L K  ++ E   + ++M++N        CA  +       EP++ I
Sbjct: 181 AFVYTALISGLAKIGKLDEALVYLNQMVEN-------GCARGV-------EPDVVI 222



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/280 (22%), Positives = 117/280 (41%), Gaps = 41/280 (14%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEA 166
           G  +S   +N+++D L K GR  + +     M+E G V ++ T++++ D +C  G    A
Sbjct: 389 GTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAA 448

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
           V  F  M   G E ++V+ N ++  +CR          F   +++ + PD  +F   L G
Sbjct: 449 VELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNSFLHG 508

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
             +  +      T G+ VE FE                               M  +   
Sbjct: 509 LCQRLD------TVGDGVELFES------------------------------MVSQGTS 532

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346
           P L  +S  +D + +       ++++  MV  G  + P+++++N +I  LC    VD   
Sbjct: 533 PNLHSYSILMDGICRAGGLEVTLEIFHEMVSRG--VAPDVVVFNTLIRWLCIAGRVDEAL 590

Query: 347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF-FH 385
             F ++    A PD+ +Y  + + L + +R+ E     FH
Sbjct: 591 EVFRELERRSA-PDAWSYWSLLDALSRCERMEEARLLSFH 629



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 65/136 (47%)

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           P+++ +  VI  LC    +D  F   ++ V  G  PD +TYN+  + L K +RV +  + 
Sbjct: 39  PDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQL 98

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
             +M + +  PT +     +  LL A   + A+ I   ++E G  P   +   ++ GL  
Sbjct: 99  LKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSK 158

Query: 444 LGRLSDVRRFAEEMLN 459
            GR+ + RR   +ML 
Sbjct: 159 AGRVEEARRIFVDMLG 174



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 83/195 (42%), Gaps = 5/195 (2%)

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLM 323
           L +  Q+D A+  L  M    C P +  F+  ++ L +      A  + +  V  G    
Sbjct: 19  LCKTGQLDRAMLLLDEMP---CSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCE-- 73

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           P+ + YN  I  LC  + VD+ F+   +M      P ++TY  + + L+K  R+ E    
Sbjct: 74  PDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAI 133

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
             +M++    PT       I  L  A   E A  I+  +L NG  P       L+ GL  
Sbjct: 134 LEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALISGLAK 193

Query: 444 LGRLSDVRRFAEEML 458
           +G+L +   +  +M+
Sbjct: 194 IGKLDEALVYLNQMV 208


>gi|255562047|ref|XP_002522032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538836|gb|EEF40436.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 451

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 88/383 (22%), Positives = 167/383 (43%), Gaps = 15/383 (3%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM 139
           T +LV  VL+    SP+ ++ FF W+      +   +  ++ +L K+ R+  MW  +  M
Sbjct: 69  TSELVFRVLRACSRSPTESLRFFNWSRAYYTPTSIEYEELIKILAKSKRYSSMWKLITQM 128

Query: 140 KEDG---VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
           K+      +S  T  SI + Y  +G  D+AV  F+  +    EQ+V   NSLL A+C + 
Sbjct: 129 KDQNPQFSISSETVRSIIEEYGRSGLIDQAVEVFNQCNSLNCEQNVDIYNSLLFALC-EV 187

Query: 197 NQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
                A   + R ++K + P+  ++++L+ GW   G  +EA     EM ++  +NP  V 
Sbjct: 188 KLFHGAYALVRRLIRKGLAPNKTTYSVLVNGWCSNGKFKEAQLFLEEMSKK-GFNPP-VR 245

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
             +  +  L+     + A + +  M  E   P +  F+  ++ +    +    V ++  +
Sbjct: 246 GRDLLIEGLLNAGYFESAKEMVFKMSKEGFVPDVNTFNCLIEAICNSGEVDFCVDMYYSL 305

Query: 316 VGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 375
             +GF   P++  Y  +I  +     +D  F+  +  +  G  P    Y  I + + +  
Sbjct: 306 RKLGF--CPDINSYKILIPAVSKVGKIDEAFKLLNNSIEDGHKPFPGLYAPIIKGMCRRG 363

Query: 376 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL---ENGILPLEA 432
           +  +   FF EM      P        ITM     +    +E  NY++   E G+ P+  
Sbjct: 364 QFDDAFCFFGEMKVKGHPPNRPVYTMLITMCGRGGK---YVEAANYLVEMTEMGLTPISR 420

Query: 433 SANELLVGLRNLGRLSDVRRFAE 455
             + +  GL+N G+    +R  +
Sbjct: 421 CFDMVTDGLKNCGKHDLAKRIEQ 443



 Score = 45.1 bits (105), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 58/269 (21%), Positives = 110/269 (40%), Gaps = 36/269 (13%)

Query: 242 EMVERFEWNPEHV----LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297
           E +  F W+  +     + YE  +  L + K+     K +  MK +N  P     S  + 
Sbjct: 86  ESLRFFNWSRAYYTPTSIEYEELIKILAKSKRYSSMWKLITQMKDQN--PQFSISSETVR 143

Query: 298 ILVKLNDST----HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
            +++    +     AV++++    +  N   N+ +YN+++  LC        +    +++
Sbjct: 144 SIIEEYGRSGLIDQAVEVFNQCNSL--NCEQNVDIYNSLLFALCEVKLFHGAYALVRRLI 201

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G  P+  TY+++      N +  E + F  EM K  + P        I  LL+A   E
Sbjct: 202 RKGLAPNKTTYSVLVNGWCSNGKFKEAQLFLEEMSKKGFNPPVRGRDLLIEGLLNAGYFE 261

Query: 414 IAIEIWNYILENGILP--------LEASAN--------ELLVGLRNLGRLSDVRRFAEEM 457
            A E+   + + G +P        +EA  N        ++   LR LG   D+  +    
Sbjct: 262 SAKEMVFKMSKEGFVPDVNTFNCLIEAICNSGEVDFCVDMYYSLRKLGFCPDINSY---- 317

Query: 458 LNRRILIYEVT-MHKLKKAFYNESRSMRD 485
              +ILI  V+ + K+ +AF   + S+ D
Sbjct: 318 ---KILIPAVSKVGKIDEAFKLLNNSIED 343


>gi|357167655|ref|XP_003581269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 587

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/378 (23%), Positives = 162/378 (42%), Gaps = 15/378 (3%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT---FASIFDSYCGAGKYD 164
           G   +   ++ + D   + GR ++   A RV+  DG+  LP+   +  +  + C  G+  
Sbjct: 115 GSAATAVTYSALADGYCRVGRLDE---ARRVV--DGMPVLPSAYAYNPLMHALCVRGQVR 169

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAIL 223
           +A++  D M   G   DVV  N LL A C+      +A+E ++ ++ +   P   ++ ++
Sbjct: 170 DALVLLDNMLYRGCAPDVVTYNILLEAACKGRGY-RQAMELIDLMRVEGCTPTNVTYNVI 228

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           ++G  +EG+V+ A +    +   +   P  V  Y T L  L    + ++  + +  M  E
Sbjct: 229 MDGMCREGDVDYARELLNSL-PSYGCTPNTV-NYNTVLKGLRTAGRWEDVEELIAEMFSE 286

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
           NC P+    S  +  L +      A++L + M     +   N++ YNAV+  LC    VD
Sbjct: 287 NCPPSEATLSVVISSLCQEGLFQRAIRLLEKMSK--HDCTANIVTYNAVVSGLCEQGHVD 344

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
                   M   G  P+  TYN++ + L   +R  + E    +M + +  P  L   T I
Sbjct: 345 GALYLLSNMQTDGCKPNIFTYNILVKGLCNAERWEDAEDLMAKMSQTDCLPDILTFNTII 404

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
             L        A+E++  + E G  P   + + ++ GL   G++        EM   +  
Sbjct: 405 GFLCQKGLTMQAVEVFKQMPEKGCCPNSVTYSSVIEGLAKTGKMEQSLELLNEM-GSKGF 463

Query: 464 IYEVTMHKLKKAFYNESR 481
             E+  H L +    E +
Sbjct: 464 NPEINYHLLAECLNEEDK 481



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 84/424 (19%), Positives = 163/424 (38%), Gaps = 76/424 (17%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSF 170
           S YA+N ++  L   G+       +  M   G    + T+  + ++ C    Y +A+   
Sbjct: 151 SAYAYNPLMHALCVRGQVRDALVLLDNMLYRGCAPDVVTYNILLEAACKGRGYRQAMELI 210

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEK 229
           D+M + G     V  N ++  +CR E     A E LN +      P+  ++  +L+G   
Sbjct: 211 DLMRVEGCTPTNVTYNVIMDGMCR-EGDVDYARELLNSLPSYGCTPNTVNYNTVLKGLRT 269

Query: 230 EGNVEEANKTFGEM----------------------------VERFEWNPEH-----VLA 256
            G  E+  +   EM                            +   E   +H     ++ 
Sbjct: 270 AGRWEDVEELIAEMFSENCPPSEATLSVVISSLCQEGLFQRAIRLLEKMSKHDCTANIVT 329

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK-LNDSTHAVQLWDIM 315
           Y   +  L     VD AL  L  M+ + C P +  +    +ILVK L ++       D+M
Sbjct: 330 YNAVVSGLCEQGHVDGALYLLSNMQTDGCKPNIFTY----NILVKGLCNAERWEDAEDLM 385

Query: 316 VGIG-FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYN--------- 365
             +   + +P+++ +N +IG LC           F QM   G  P+S+TY+         
Sbjct: 386 AKMSQTDCLPDILTFNTIIGFLCQKGLTMQAVEVFKQMPEKGCCPNSVTYSSVIEGLAKT 445

Query: 366 -------------------------MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
                                    ++ ECL +  ++ E  +  H++      P  +   
Sbjct: 446 GKMEQSLELLNEMGSKGFNPEINYHLLAECLNEEDKLVEAIQMVHKLQDTGISPQAVLYN 505

Query: 401 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           T +  L    + + AI+I + ++ +G +P E++ + L+ GL + G + + R     + +R
Sbjct: 506 TILLGLCRNGKTDQAIDILSNMVSDGCMPDESTYSILIQGLAHEGYMKEARELLSTLSSR 565

Query: 461 RILI 464
            +++
Sbjct: 566 DVIV 569



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 94/244 (38%), Gaps = 9/244 (3%)

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
           +VE     P+  LA         RG+  D A    RV++      T   +S   D   ++
Sbjct: 78  VVESSLCPPDVALANRLVRDLCRRGRPADAA----RVVEACGSAATAVTYSALADGYCRV 133

Query: 303 NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSL 362
                A ++ D     G  ++P+   YN ++  LC    V +     D M++ G  PD +
Sbjct: 134 GRLDEARRVVD-----GMPVLPSAYAYNPLMHALCVRGQVRDALVLLDNMLYRGCAPDVV 188

Query: 363 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 422
           TYN++ E   K +   +  +    M      PT +     +  +    + + A E+ N +
Sbjct: 189 TYNILLEAACKGRGYRQAMELIDLMRVEGCTPTNVTYNVIMDGMCREGDVDYARELLNSL 248

Query: 423 LENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 482
              G  P   + N +L GLR  GR  DV     EM +      E T+  +  +   E   
Sbjct: 249 PSYGCTPNTVNYNTVLKGLRTAGRWEDVEELIAEMFSENCPPSEATLSVVISSLCQEGLF 308

Query: 483 MRDI 486
            R I
Sbjct: 309 QRAI 312


>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 740

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 145/313 (46%), Gaps = 16/313 (5%)

Query: 150 FASIFDSYCGAGKYDEA--VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN 207
           F ++ + Y   G+ DEA  VM   ++S+ G   D+   N+L+  +C++    S A E +N
Sbjct: 374 FNTLINGYVSRGRLDEAKAVMHESMLSV-GCGPDIFTYNTLILGLCKKGYLVS-ARELMN 431

Query: 208 RVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
            ++ K  +P+  ++ IL++ + KEG +EEA     EM  +      + + Y   +  L +
Sbjct: 432 EMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGK--GLALNAVGYNCLISALCK 489

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNL 326
            ++V +AL     M  + C P +  F++ +  L K+N    A+ L+  M+  G  ++ N 
Sbjct: 490 DEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEG--VIANT 547

Query: 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 386
           I YN +I        +    +  + M+F G   D +TYN + + L +   + +    F +
Sbjct: 548 ITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFED 607

Query: 387 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 446
           M+     P  ++C   I  L      + A+E    ++  G+ P   + N L+ GL   GR
Sbjct: 608 MMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGR 667

Query: 447 LSDVRRFAEEMLN 459
                  A+E LN
Sbjct: 668 -------AQEALN 673



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 93/407 (22%), Positives = 169/407 (41%), Gaps = 14/407 (3%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAG--RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVR 137
           TP  + ++L+L  D P+S ++ F+WAG  +G       + +++D LG  G F+     + 
Sbjct: 95  TPYQLCKLLELPLDVPTS-MELFQWAGTQKGYCHMFDVYYMLIDKLGAAGEFKTTDALLM 153

Query: 138 VMKEDGVLSLPT-FASIFDSYCGAGKYDEAV-MSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
            MK++G++   + F  I   Y  AG   +A  +  D+  ++  E    + N +L  +   
Sbjct: 154 QMKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLDMRGVYSCEPTFRSYNVVLDVLLAG 213

Query: 196 ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
                    F   + K + P   +F ++++       V+ A     +M  R    P + +
Sbjct: 214 NCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACALLKDMT-RHGCVP-NAI 271

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
            Y+T +  L +  +V+E LK L  M    C P +  F++A+  L K+     A +L D M
Sbjct: 272 VYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRM 331

Query: 316 VGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 375
           +  GF   PN   Y  ++  LC    VD      +++      P+ + +N +    +   
Sbjct: 332 LLRGFT--PNSFTYGVLMHGLCRMGKVDEARMLLNKV----PNPNVVLFNTLINGYVSRG 385

Query: 376 RVHEVEKFFHE-MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 434
           R+ E +   HE M+     P      T I  L        A E+ N +   G  P   + 
Sbjct: 386 RLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITY 445

Query: 435 NELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
             L+      GRL + R   +EM  + + +  V  + L  A   + +
Sbjct: 446 TILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEK 492



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 80/414 (19%), Positives = 174/414 (42%), Gaps = 14/414 (3%)

Query: 67  DIESALACTGIIPTPDLVHEVLQLSYDSPSSAVD-FFRWAGRGQRLSPYAWNLMVDVLGK 125
           D+    +C     + ++V +VL L+ + P    + F+    +G   + Y + +++  L  
Sbjct: 189 DMRGVYSCEPTFRSYNVVLDVL-LAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCL 247

Query: 126 NGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVA 184
               +     ++ M   G + +   + ++  +    G+ +E +   + M + G   DV  
Sbjct: 248 VNEVDSACALLKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVNT 307

Query: 185 VNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
            N  +  +C+   +   A + ++R + +   P+  ++ +L+ G  + G V+EA     ++
Sbjct: 308 FNDAIHGLCKML-RIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKV 366

Query: 244 VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR-VMKGENCFPTLKFFSNALDILVKL 302
                 NP  VL + T +   +   ++DEA   +   M    C P +  ++  +  L K 
Sbjct: 367 P-----NPNVVL-FNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKK 420

Query: 303 NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSL 362
                A +L + M   G    PN+I Y  +I   C    ++      D+M   G   +++
Sbjct: 421 GYLVSARELMNEMQIKGCE--PNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAV 478

Query: 363 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 422
            YN +   L K+++V +    F +M     +P      + I  L   ++ E A+ ++  +
Sbjct: 479 GYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDM 538

Query: 423 LENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
           L  G++    + N L+      G + +  +   +ML R   + ++T + L KA 
Sbjct: 539 LLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKAL 592


>gi|298204849|emb|CBI34156.3| unnamed protein product [Vitis vinifera]
          Length = 442

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 142/309 (45%), Gaps = 9/309 (2%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  FA +  S      Y   +     M   GV  +V  +N L+++ C   N+   A   
Sbjct: 44  SIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHL-NRVGFAFSV 102

Query: 206 LNRVKKIV-DPDGDSFAILLEGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLIT 263
           L ++ K+   PD  +F  L+ G   EG + EA   F +M+ E F+ N   V+ Y T +  
Sbjct: 103 LAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPN---VVTYGTLING 159

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLM 323
           L +      A++ LR M+  NC P +  +++ +D L K    T A  L+  MVG G +  
Sbjct: 160 LCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGIS-- 217

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           P++  Y +++  LCN  +  +V    +QMV     PD + ++ + + L K  +V E  + 
Sbjct: 218 PDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEI 277

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL-VGLR 442
              MI+   +P  +   T +       E + A+++++ ++  G  P   S   L+  G +
Sbjct: 278 VDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINAGKK 337

Query: 443 NLGRLSDVR 451
           + G L  ++
Sbjct: 338 DGGGLVSLQ 346



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 91/223 (40%), Gaps = 8/223 (3%)

Query: 108 GQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
           GQ +SP  + +  +V  L     ++ +   +  M    +L  +  F+++ D+ C  GK  
Sbjct: 213 GQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVT 272

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
           EA    D+M   GVE DVV   +L+   C Q         F   V+K   PD  S+  L+
Sbjct: 273 EAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLI 332

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
              +K+G       +  E++   +  P+ V      +I   + K  ++    L  M    
Sbjct: 333 NAGKKDGG---GLVSLQEVIGLVKETPDAVKGGAVEVIRKDKMKLFEKGRTLLNEMVNSK 389

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
             P +  FS  +D L K      A  + D+M+  G    PN +
Sbjct: 390 IMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVE--PNAV 430



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 78/188 (41%), Gaps = 4/188 (2%)

Query: 308 AVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMI 367
           A+ L+D M+  GF   PN++ Y  +I  LC   +     R    M      PD + Y  I
Sbjct: 134 ALHLFDKMIDEGFQ--PNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSI 191

Query: 368 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 427
            + L K+++V E    F +M+     P      + +  L +  E +    + N ++ + I
Sbjct: 192 IDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKI 251

Query: 428 LPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL--KKAFYNESRSMRD 485
           LP     + ++  L   G++++     + M+ R +    VT   L       +E      
Sbjct: 252 LPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVK 311

Query: 486 IFDSLERR 493
           +FD + R+
Sbjct: 312 VFDMMVRK 319



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 67/300 (22%), Positives = 126/300 (42%), Gaps = 16/300 (5%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F +    G + +   +  +++ L K G        +R M++      +  + SI DS C 
Sbjct: 138 FDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCK 197

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGD 218
             +  EA   F  M   G+  D+    SL+ A+C    +       LN+ V   + PD  
Sbjct: 198 DRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNL-CEWKHVTTLLNQMVNSKILPDVV 256

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
            F+ +++   KEG V EA++    M++R    P+ V+ Y T +       ++DEA+K   
Sbjct: 257 IFSTVVDALCKEGKVTEAHEIVDMMIQR-GVEPD-VVTYTTLMDGHCLQSEMDEAVKVFD 314

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
           +M  +   P +  ++  ++   K  D    V L ++ +G+     P+ +   AV  +   
Sbjct: 315 MMVRKGFAPDVISYTTLINAGKK--DGGGLVSLQEV-IGL-VKETPDAVKGGAVEVI--- 367

Query: 339 NDDVDNVFR----FFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
             D   +F       ++MV     P+ + ++ + + L K  +V E       MIK   +P
Sbjct: 368 RKDKMKLFEKGRTLLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEP 427



 Score = 46.2 bits (108), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 47/245 (19%), Positives = 90/245 (36%), Gaps = 4/245 (1%)

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P  ++ +   L ++ + K     L     M      P +   +  ++    LN    A  
Sbjct: 42  PPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFS 101

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
           +   ++ +G    P+   +  +I  LC    +      FD+M+  G  P+ +TY  +   
Sbjct: 102 VLAKILKLGHQ--PDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLING 159

Query: 371 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 430
           L K        +    M +   QP  +   + I  L    +   A  +++ ++  GI P 
Sbjct: 160 LCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPD 219

Query: 431 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFD 488
             +   L+  L NL     V     +M+N +IL   V    +  A   E +     +I D
Sbjct: 220 IFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVD 279

Query: 489 SLERR 493
            + +R
Sbjct: 280 MMIQR 284


>gi|296081998|emb|CBI21003.3| unnamed protein product [Vitis vinifera]
          Length = 837

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/357 (23%), Positives = 165/357 (46%), Gaps = 8/357 (2%)

Query: 143 GVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRA 202
           GV ++ T+  +    C  GK DEA    D M   G+  +VV+ N ++   CR+ N    +
Sbjct: 425 GVANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMAS 484

Query: 203 LEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI 262
             F + + + + P+  +++IL++G  K+G+ E+A   F +M+      P     + T + 
Sbjct: 485 SVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLS-LNIAPTD-FTFNTIIN 542

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL 322
            L +  Q+ EA   L+    E   P+   +++ +D  +K  +   A+ ++  M   G + 
Sbjct: 543 GLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVS- 601

Query: 323 MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
            PN++ Y ++I   C ++ +D   +  D+M   G   D   Y+ + +   K + +   + 
Sbjct: 602 -PNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQD 660

Query: 383 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE-ASANELLVGL 441
            F E+++    P  +   + I+   D +  E A+ +W   + N  +P +  +   L+ GL
Sbjct: 661 LFFELLEVGLSPNRIVYNSMISGFRDLNNMEAAL-VWYKKMINDRIPCDLGTYTTLIDGL 719

Query: 442 RNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLERRCKT 496
              GRL        EML++ I+   +T H L     N+ +  + R I + ++R+  T
Sbjct: 720 LKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMT 776



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 89/419 (21%), Positives = 170/419 (40%), Gaps = 46/419 (10%)

Query: 67  DIESALACTGIIPTPDLVHEVLQ--LSYDSPSSAVDFFRWAG-RGQRLSPYAWNLMVDVL 123
           D+ + +   GI      VH +++  L       A ++FR    RG +L   A+++++  +
Sbjct: 206 DLYNKMVLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAV 265

Query: 124 GKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDV 182
            K          +  MKE G V S  TF S+  +    G   EA+   + M   G   ++
Sbjct: 266 CKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNL 325

Query: 183 VAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVEEANKTFG 241
           V   SL+   C Q N  S AL   N++ +  + P+  ++++L+EG    GN+E+A++ + 
Sbjct: 326 VVATSLMKGYCAQGNLDS-ALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYT 384

Query: 242 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
           +M  +    P  V    + L   ++    +EA K                F  A+D  V 
Sbjct: 385 QM--KLNGIPPSVFNVNSLLRGYLKAPLWEEASKL---------------FDEAVDCGV- 426

Query: 302 LNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS 361
                                  N+  YN ++  LC    +D      D MV  G  P+ 
Sbjct: 427 ----------------------ANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNV 464

Query: 362 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 421
           ++YN +     +   +      F +M+  + +P  +  +  I       + E A+++++ 
Sbjct: 465 VSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQ 524

Query: 422 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 480
           +L   I P + + N ++ GL  +G++S+ R   +  L    +   +T + +   F  E 
Sbjct: 525 MLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEG 583



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 72/335 (21%), Positives = 150/335 (44%), Gaps = 4/335 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T++ + D     G  ++A+  FD M    +       N++++ +C+    +    +  N 
Sbjct: 501 TYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNF 560

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           +++   P   ++  +++G+ KEGN++ A   + EM E F  +P +V+ Y + +    +  
Sbjct: 561 LEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCE-FGVSP-NVVTYTSLINGFCKSN 618

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           ++D ALK    M+ +     +  +S  +D   K  D   A  L+  ++ +G  L PN I+
Sbjct: 619 RIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVG--LSPNRIV 676

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           YN++I    + ++++    ++ +M+      D  TY  + + L+K  R+      + EM+
Sbjct: 677 YNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEML 736

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
                P  +     +  L +  + E A +I   +    + P     N L+ G    G L 
Sbjct: 737 SKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLK 796

Query: 449 DVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSM 483
           +     +EML+R ++  +VT   L    +   RS+
Sbjct: 797 EAFTLHDEMLDRGLVPDDVTYDILINGKFKGDRSL 831


>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
          Length = 791

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 98/408 (24%), Positives = 172/408 (42%), Gaps = 46/408 (11%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
           G G      ++  +++   K G  ++ ++    M + G+L  + T+ SI  + C A   D
Sbjct: 189 GGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMD 248

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAIL 223
           +A+   + M  +GV  D +  NS+L   C    Q   A+ FL +++   V+PD  ++++L
Sbjct: 249 KAMEVLNTMVKNGVMPDCMTYNSILHGYC-SSGQPKEAIGFLKKMRSDGVEPDVVTYSLL 307

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           ++   K G   EA K F  M +R    PE +  Y T L        + E    L +M   
Sbjct: 308 MDYLCKNGRCMEARKIFDSMTKR-GLKPE-ITTYGTLLQGYATKGALVEMHGLLDLMVRN 365

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
              P    FS  +           A+ ++  M   G N  PN + Y AVIG+LC +  V+
Sbjct: 366 GIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLN--PNAVTYGAVIGILCKSGRVE 423

Query: 344 NVFRFFDQMVFHGAFPDSLTYN-----------------MIFE------CL--------- 371
           +   +F+QM+  G  P ++ YN                 +I E      CL         
Sbjct: 424 DAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSII 483

Query: 372 ---IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 428
               K  RV E EK F  M++   +P  +   T I     A + + A+++ + ++  G+ 
Sbjct: 484 DSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLK 543

Query: 429 PLEASANELLVGLRNLGRLSDVRRFAEEM----LNRRILIYEVTMHKL 472
           P   + + L+ G   + R+ D     +EM    ++  I+ Y + +  L
Sbjct: 544 PNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGL 591



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 87/392 (22%), Positives = 170/392 (43%), Gaps = 12/392 (3%)

Query: 56  ICEILAHASSDDIESALACTGIIPTPDLVHEVLQ--LSYDSPSSAVDFFRWAGRGQRLSP 113
           +C+  A   + ++ + +   G++P     + +L    S   P  A+ F +   R   + P
Sbjct: 241 LCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKM-RSDGVEP 299

Query: 114 --YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSF 170
               ++L++D L KNGR  +       M + G+   + T+ ++   Y   G   E     
Sbjct: 300 DVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLL 359

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
           D+M  +G+  D    + L+ A   Q       L F    ++ ++P+  ++  ++    K 
Sbjct: 360 DLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKS 419

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF-LRVMKGENCFPTL 289
           G VE+A   F +M++    +P +++ Y + +  L    + + A +  L ++    C  T+
Sbjct: 420 GRVEDAMLYFEQMIDE-GLSPGNIV-YNSLIHGLCTCNKWERAEELILEMLDRGICLNTI 477

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
            FF++ +D   K      + +L+++MV IG    PN+I YN +I   C    +D   +  
Sbjct: 478 -FFNSIIDSHCKEGRVIESEKLFELMVRIGVK--PNVITYNTLINGYCLAGKMDEAMKLL 534

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 409
             MV  G  P+++TY+ +     K  R+ +    F EM  +   P  +     +  L   
Sbjct: 535 SGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQT 594

Query: 410 DEPEIAIEIWNYILENGILPLEASANELLVGL 441
                A E++  I E+G     ++ N +L GL
Sbjct: 595 RRTAAAKELYVRITESGTQIELSTYNIILHGL 626



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 88/385 (22%), Positives = 163/385 (42%), Gaps = 25/385 (6%)

Query: 107 RGQRLSPYAWNLMVDVLGKNG------RFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGA 160
           RG+  S Y  N  +  + ++       R+ +M    R   ++    L T+  +    C A
Sbjct: 44  RGRGASIYGLNRALADVARDSPAAAVSRYNRM---ARAGADEVTPDLCTYGILIGCCCRA 100

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF-LNRVKKI-VDPDGD 218
           G+ D    +   +   G   D +A   LL  +C  + +TS A++  L R+ ++   P+  
Sbjct: 101 GRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLC-ADKRTSDAMDIVLRRMTELGCIPNVF 159

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
           S+ ILL+G   E   +EA +    M  +R   +P  V++Y T +    +    D+A    
Sbjct: 160 SYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTY 219

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337
             M      P +  +++ +  L K      A+++ + MV  G  +MP+ + YN+++   C
Sbjct: 220 HEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNG--VMPDCMTYNSILHGYC 277

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
           ++        F  +M   G  PD +TY+++ + L KN R  E  K F  M K   +P   
Sbjct: 278 SSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKP--- 334

Query: 398 NCATAITMLLDADEPEIAIE---IWNYILENGILPLEASANELLVGLRNLGRLSDV---- 450
              T  T+L         +E   + + ++ NGI P     + L+    N G++       
Sbjct: 335 EITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVF 394

Query: 451 RRFAEEMLNRRILIYEVTMHKLKKA 475
            +  ++ LN   + Y   +  L K+
Sbjct: 395 SKMRQQGLNPNAVTYGAVIGILCKS 419



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 137/314 (43%), Gaps = 13/314 (4%)

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI----VDPDGDS 219
           ++A   FD +   G    +  +N  L+ + R  +  + A+   NR+ +     V PD  +
Sbjct: 32  EDARHVFDELLRRGRGASIYGLNRALADVAR--DSPAAAVSRYNRMARAGADEVTPDLCT 89

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKF-L 277
           + IL+    + G ++      G ++++ F  +    +A+   L  L   K+  +A+   L
Sbjct: 90  YGILIGCCCRAGRLDLGFAALGNVIKKGFRVDA---IAFTPLLKGLCADKRTSDAMDIVL 146

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG-IGFNLMPNLIMYNAVIGLL 336
           R M    C P +  ++  L  L   N S  A++L  +M    G    P+++ Y  VI   
Sbjct: 147 RRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGF 206

Query: 337 CNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 396
               D D  +  + +M+  G  PD +TYN I   L K + + +  +  + M+KN   P  
Sbjct: 207 FKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDC 266

Query: 397 LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 456
           +   + +     + +P+ AI     +  +G+ P   + + L+  L   GR  + R+  + 
Sbjct: 267 MTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDS 326

Query: 457 MLNRRILIYEVTMH 470
           M  +R L  E+T +
Sbjct: 327 M-TKRGLKPEITTY 339



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 66/316 (20%), Positives = 132/316 (41%), Gaps = 38/316 (12%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +++++      G+ +Q       M++ G+  +  T+ ++    C +G+ ++A++ F+ 
Sbjct: 372 YVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQ 431

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEF-LNRVKKIVDPDGDSFAILLEGWEKEG 231
           M   G+    +  NSL+  +C   N+  RA E  L  + + +  +   F  +++   KEG
Sbjct: 432 MIDEGLSPGNIVYNSLIHGLCTC-NKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEG 490

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            V E+ K F E++ R    P +V+ Y T +       ++DEA+K L  M      P    
Sbjct: 491 RVIESEKLF-ELMVRIGVKP-NVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVT 548

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFN---LMPNLIM-------------------- 328
           +S  ++   K++    A+ L+  M   G +   +  N+I+                    
Sbjct: 549 YSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRIT 608

Query: 329 ----------YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVH 378
                     YN ++  LC N   D+  + F  +       ++ T+N++ + L+K  R  
Sbjct: 609 ESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRND 668

Query: 379 EVEKFFHEMIKNEWQP 394
           E +  F     N   P
Sbjct: 669 EAKDLFVAFSSNGLVP 684


>gi|356532610|ref|XP_003534864.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Glycine max]
          Length = 642

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/356 (25%), Positives = 162/356 (45%), Gaps = 10/356 (2%)

Query: 137 RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM-SMHGVEQDVVAVNSLLSAICRQ 195
           ++ +E  V     F  +F +Y  A   ++AV  F  M      +Q V + NS+L+ I  Q
Sbjct: 86  QMKRERRVFLEKNFIVMFKAYGKAHLPEKAVDLFHRMWGEFQCKQTVKSFNSVLNVIV-Q 144

Query: 196 ENQTSRALEFLNRV---KKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           E   +RALEF N V   K + + P+  +F ++++   + G V++A + F E+  R    P
Sbjct: 145 EGLFNRALEFYNHVVASKSLNIHPNALTFNLVIKAMCRLGLVDKAIEVFREIPLR-NCAP 203

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           ++   Y T +  L + +++DEA+  L  M+ E  FP L  F+  +  L K  D   A +L
Sbjct: 204 DNY-TYSTLMHGLCKEERIDEAVSLLDEMQVEGTFPNLVAFNVLISALCKKGDLGRAAKL 262

Query: 312 WDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECL 371
            D M   G   +PN + YNA++  LC    ++      +QMV +   P+ +T+  +    
Sbjct: 263 VDNMFLKG--CVPNEVTYNALVHGLCLKGKLEKAVSLLNQMVSNKCVPNDVTFGTLINGF 320

Query: 372 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 431
           +   R  +  +    +     +      ++ I+ L    +   A+E+W  ++  G  P  
Sbjct: 321 VMQGRASDGTRVLVSLEARGHRGNEYVYSSLISGLCKEGKFNQAMELWKEMVGKGCGPNT 380

Query: 432 ASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIF 487
              + L+ GL   G+L + R F  EM N+  L    T   L + ++    S + I 
Sbjct: 381 IVYSALIDGLCREGKLDEARGFLSEMKNKGYLPNSFTYSSLMRGYFEAGDSHKAIL 436



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/391 (20%), Positives = 165/391 (42%), Gaps = 12/391 (3%)

Query: 95  PSSAVDFFR--WAGRGQRLSPYAWNLMVDVLGKNGRFE---QMWNAVRVMKEDGVL-SLP 148
           P  AVD F   W     + +  ++N +++V+ + G F    + +N V   K   +  +  
Sbjct: 112 PEKAVDLFHRMWGEFQCKQTVKSFNSVLNVIVQEGLFNRALEFYNHVVASKSLNIHPNAL 171

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF  +  + C  G  D+A+  F  + +     D    ++L+  +C++E +   A+  L+ 
Sbjct: 172 TFNLVIKAMCRLGLVDKAIEVFREIPLRNCAPDNYTYSTLMHGLCKEE-RIDEAVSLLDE 230

Query: 209 VK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           ++ +   P+  +F +L+    K+G++  A K    M  +    P  V  Y   +  L   
Sbjct: 231 MQVEGTFPNLVAFNVLISALCKKGDLGRAAKLVDNMFLK-GCVPNEV-TYNALVHGLCLK 288

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
            ++++A+  L  M    C P    F   ++  V    ++   ++   +   G     N  
Sbjct: 289 GKLEKAVSLLNQMVSNKCVPNDVTFGTLINGFVMQGRASDGTRVLVSLEARGHR--GNEY 346

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
           +Y+++I  LC     +     + +MV  G  P+++ Y+ + + L +  ++ E   F  EM
Sbjct: 347 VYSSLISGLCKEGKFNQAMELWKEMVGKGCGPNTIVYSALIDGLCREGKLDEARGFLSEM 406

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
               + P     ++ +    +A +   AI +W  +  N  +  E   + L+ GL   G+ 
Sbjct: 407 KNKGYLPNSFTYSSLMRGYFEAGDSHKAILVWKEMANNNCIHNEVCYSILINGLCKDGKF 466

Query: 448 SDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 478
            +     ++ML+R I +  V    +   F N
Sbjct: 467 MEALMVWKQMLSRGIKLDVVAYSSMIHGFCN 497



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 86/406 (21%), Positives = 155/406 (38%), Gaps = 50/406 (12%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y ++ ++  L K  R ++  + +  M+ +G   +L  F  +  + C  G    A    D 
Sbjct: 206 YTYSTLMHGLCKEERIDEAVSLLDEMQVEGTFPNLVAFNVLISALCKKGDLGRAAKLVDN 265

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEG 231
           M + G   + V  N+L+  +C +  +  +A+  LN+ V     P+  +F  L+ G+  +G
Sbjct: 266 MFLKGCVPNEVTYNALVHGLCLK-GKLEKAVSLLNQMVSNKCVPNDVTFGTLINGFVMQG 324

Query: 232 NVEEANKTFGEMVERFEWNPEHV---------------------------------LAYE 258
              +  +    +  R     E+V                                 + Y 
Sbjct: 325 RASDGTRVLVSLEARGHRGNEYVYSSLISGLCKEGKFNQAMELWKEMVGKGCGPNTIVYS 384

Query: 259 TFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI 318
             +  L R  ++DEA  FL  MK +   P    +S+ +    +  DS  A+ +W  M   
Sbjct: 385 ALIDGLCREGKLDEARGFLSEMKNKGYLPNSFTYSSLMRGYFEAGDSHKAILVWKEMAN- 443

Query: 319 GFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVH 378
             N + N + Y+ +I  LC +         + QM+  G   D + Y+ +         V 
Sbjct: 444 -NNCIHNEVCYSILINGLCKDGKFMEALMVWKQMLSRGIKLDVVAYSSMIHGFCNANLVE 502

Query: 379 EVEKFFHEMIKNE--WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 436
           +  K F++M+      QP  +     +           AI+I N +L+ G  P   + + 
Sbjct: 503 QGLKLFNQMLCQGPVVQPDVITYNILLNAFCIQKSIFRAIDILNIMLDQGCDPDFITCDI 562

Query: 437 LLVGLR-NLGRLSDVRRFAEEMLNRRI---------LIYEVTMHKL 472
            L  LR N+    D R F +E++ R +          I EV MHK 
Sbjct: 563 FLKTLRENMNPPQDGREFLDELVVRLVKRQRTIGASKIIEVMMHKF 608


>gi|115486223|ref|NP_001068255.1| Os11g0607100 [Oryza sativa Japonica Group]
 gi|77551887|gb|ABA94684.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113645477|dbj|BAF28618.1| Os11g0607100 [Oryza sativa Japonica Group]
          Length = 671

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/391 (21%), Positives = 161/391 (41%), Gaps = 10/391 (2%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G  L      ++V  L + GRF+ +    R M E G   ++  + +  D  C      +A
Sbjct: 211 GFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQA 270

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKI-VDPDGDSFAILL 224
               + M   G++ +V    +L+  +C+    T RA   FL  +K     P+  ++ +++
Sbjct: 271 FHVLEEMVGRGLKPNVYTHTTLIDGLCKI-GWTERAFRLFLKLIKSSSYKPNVHTYTVMI 329

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G+ +EG +  A      MVE+    P +   Y T +    +G   D A + +  MK E 
Sbjct: 330 GGYCREGKLARAEMLLVRMVEQ-GLKP-NTNTYTTLIGGHCKGGSFDRAFELMNKMKQEG 387

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
             P +  ++  +D   K      A ++  +    G     + I Y  +I   C    +  
Sbjct: 388 FLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKF--DKITYTILITEHCKQGHITY 445

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
               FD+MV +G  PD   Y  +     + +++ E +KFF + +     PT     + I 
Sbjct: 446 ALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIA 505

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 464
                    +A+ ++  +++NG      +   L+ GL    RL + +   E ML++R++ 
Sbjct: 506 GYCKVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRLEEAKALYEGMLDKRLVP 565

Query: 465 YEVTMHKLKKAFYNESRS--MRDIFDSLERR 493
            EVT   L   +    ++     + D L++R
Sbjct: 566 CEVTRVTLTFEYCRREKTSIAVSVLDRLDKR 596



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 65/294 (22%), Positives = 112/294 (38%), Gaps = 11/294 (3%)

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
           AG+  EA      M  HG+   V   N +L       +       F    +  V PD  S
Sbjct: 124 AGRLPEAADMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAGVCPDERS 183

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI---TLIRGKQVDEALKF 276
           F  L+    +EG VEE +     M     W     L   T  +   +L    +  +  +F
Sbjct: 184 FRALVVVCCREGKVEEVDALLAAM-----WRYGFSLDNATCTVVVRSLCEKGRFKDVSEF 238

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLL 336
            R M      P +  ++  +D L K      A  + + MVG G  L PN+  +  +I  L
Sbjct: 239 FRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRG--LKPNVYTHTTLIDGL 296

Query: 337 CNNDDVDNVFRFFDQMVFHGAF-PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 395
           C     +  FR F +++   ++ P+  TY ++     +  ++   E     M++   +P 
Sbjct: 297 CKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPN 356

Query: 396 PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 449
                T I         + A E+ N + + G LP   + N ++ G    G++ +
Sbjct: 357 TNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQE 410


>gi|297733848|emb|CBI15095.3| unnamed protein product [Vitis vinifera]
          Length = 815

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 147/353 (41%), Gaps = 57/353 (16%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLS--PYAWNLMVDVLGKNGRFEQMWNAVR 137
           TP+LV  VL+L ++    A+ FF+        +    +++  +D+ G+   ++ +W  V 
Sbjct: 66  TPNLVDRVLKLLWNHGPKALQFFKSLDYHPTYAHVSSSFDHAIDIAGRLRDYKTLWTLVD 125

Query: 138 VMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
            M+   +   P TFA I + Y  AGK D A+  F  M  HG  QD+ + N++L  +C   
Sbjct: 126 RMRTRRLGPNPKTFAIITERYVSAGKPDRAIKIFFSMHEHGCVQDLNSFNTILDVLC--- 182

Query: 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
                                           K   VE A+    ++   F         
Sbjct: 183 --------------------------------KSKRVEMADNKLFKVFRGF--------- 201

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
                    R  Q+ EA +F   MK   C   +  ++  +       +   A ++++ M+
Sbjct: 202 --------FRAGQLKEAWEFFLQMKKRKCEIDVVTYTTVVHGFGVAGEVRKAQRVFNEMI 253

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
           G G  ++P++  YNA I +LC  D+V+N    F++M+  G  P+S TYN++   L    R
Sbjct: 254 GEG--VLPSVATYNAFIQVLCKKDNVENAISVFEEMLRKGYMPNSTTYNVVIRGLCHVGR 311

Query: 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
           + +  +F   M  +E +P        I    DA+E E  + ++  + +   LP
Sbjct: 312 MEKAMEFMARMKDDECEPNVQIYNVVIRYFCDAEEIEKGLNVFEKMGDADCLP 364



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 71/187 (37%), Gaps = 17/187 (9%)

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYN 330
           D A+K    M    C   L  F+  LD+L K    +  V++ D              ++ 
Sbjct: 153 DRAIKIFFSMHEHGCVQDLNSFNTILDVLCK----SKRVEMADNK------------LFK 196

Query: 331 AVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 390
              G       +   + FF QM       D +TY  +         V + ++ F+EMI  
Sbjct: 197 VFRGFF-RAGQLKEAWEFFLQMKKRKCEIDVVTYTTVVHGFGVAGEVRKAQRVFNEMIGE 255

Query: 391 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 450
              P+       I +L   D  E AI ++  +L  G +P   + N ++ GL ++GR+   
Sbjct: 256 GVLPSVATYNAFIQVLCKKDNVENAISVFEEMLRKGYMPNSTTYNVVIRGLCHVGRMEKA 315

Query: 451 RRFAEEM 457
             F   M
Sbjct: 316 MEFMARM 322



 Score = 42.0 bits (97), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 79/210 (37%), Gaps = 26/210 (12%)

Query: 275 KFLRVMKGENCFPTLKF----FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYN 330
           K L+  K  +  PT       F +A+DI  +L D      L D M      L PN   + 
Sbjct: 83  KALQFFKSLDYHPTYAHVSSSFDHAIDIAGRLRDYKTLWTLVDRMRT--RRLGPNPKTFA 140

Query: 331 AVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVH------------ 378
            +     +    D   + F  M  HG   D  ++N I + L K+KRV             
Sbjct: 141 IITERYVSAGKPDRAIKIFFSMHEHGCVQDLNSFNTILDVLCKSKRVEMADNKLFKVFRG 200

Query: 379 --------EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 430
                   E  +FF +M K + +   +   T +     A E   A  ++N ++  G+LP 
Sbjct: 201 FFRAGQLKEAWEFFLQMKKRKCEIDVVTYTTVVHGFGVAGEVRKAQRVFNEMIGEGVLPS 260

Query: 431 EASANELLVGLRNLGRLSDVRRFAEEMLNR 460
            A+ N  +  L     + +     EEML +
Sbjct: 261 VATYNAFIQVLCKKDNVENAISVFEEMLRK 290


>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Vitis vinifera]
          Length = 582

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 90/425 (21%), Positives = 176/425 (41%), Gaps = 48/425 (11%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAG 161
           R   RG       +N+M+  L    +       + +++ ++ + ++ T+  + ++    G
Sbjct: 162 RMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTILIEATIVEG 221

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSF 220
             +EA+   + M   G+  D+   N+++  +C+ E    RA E +  +  K   PD  S+
Sbjct: 222 GINEAMKLLEEMLARGLLPDMYTYNAIIRGMCK-EGMVERAAELITSLTSKGCKPDVISY 280

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
            ILL  +  +G  +E  K   EM  R    P  V  Y   + +L R  ++DEA+  L+VM
Sbjct: 281 NILLRAFLNQGKWDEGEKLVAEMFSR-GCEPNKV-TYSILISSLCRFGRIDEAISVLKVM 338

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
             +   P    +   +  L K      A+ + D M+  G   +P+++ YN ++  LC N 
Sbjct: 339 IEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNG--CLPDIVNYNTILAALCKNG 396

Query: 341 DVDNVFRFFDQ-----------------------------------MVFHGAFPDSLTYN 365
           + +     F++                                   M+  G  PD +TYN
Sbjct: 397 NANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYN 456

Query: 366 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 425
            +  CL ++  V E      +M ++ ++PT ++    +  L      + AI ++  ++E 
Sbjct: 457 SLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEK 516

Query: 426 GILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRD 485
           G  P E +   L+ G+   G  ++    A  + +R + I + +  +L K F      M D
Sbjct: 517 GCRPNETTYILLIEGIGFAGWRTEAMELANSLFSRDV-ISQDSFKRLNKTF-----PMLD 570

Query: 486 IFDSL 490
           ++  L
Sbjct: 571 VYKEL 575



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 135/297 (45%), Gaps = 9/297 (3%)

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN--QTSRALEFLNRVK 210
           + +  C AGK++E++   + +   G   DV+    L+      +N  + SR +E L   +
Sbjct: 74  LLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEIL---E 130

Query: 211 KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270
              +PD  ++  ++ G+ K   +E A +    M  R  + P+ ++ Y   + +L   +++
Sbjct: 131 SHTEPDVFAYNAVISGFCKVNRIEAATQVLNRMKAR-GFLPD-IVTYNIMIGSLCNRRKL 188

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYN 330
             ALK L  +  +NC PT+  ++  ++  +       A++L + M+  G  L+P++  YN
Sbjct: 189 GLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARG--LLPDMYTYN 246

Query: 331 AVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 390
           A+I  +C    V+        +   G  PD ++YN++    +   +  E EK   EM   
Sbjct: 247 AIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSR 306

Query: 391 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
             +P  +  +  I+ L      + AI +   ++E  + P   S + L+  L   GRL
Sbjct: 307 GCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRL 363



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 77/368 (20%), Positives = 146/368 (39%), Gaps = 44/368 (11%)

Query: 129 FEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAV 185
           F+ +  A RVM+     + P    + ++   +C   + + A    + M   G   D+V  
Sbjct: 116 FKNIEKASRVMEILESHTEPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTY 175

Query: 186 NSLLSAICRQENQTSRALEFLNRVKKIVD---PDGDSFAILLEGWEKEGNVEEANKTFGE 242
           N ++ ++C +  +   AL+ L+++  ++D   P   ++ IL+E    EG + EA K   E
Sbjct: 176 NIMIGSLCNRR-KLGLALKVLDQL--LLDNCMPTVITYTILIEATIVEGGINEAMKLLEE 232

Query: 243 MVER------FEWNP---------------------------EHVLAYETFLITLIRGKQ 269
           M+ R      + +N                              V++Y   L   +   +
Sbjct: 233 MLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGK 292

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY 329
            DE  K +  M    C P    +S  +  L +      A+ +  +M  I   L P+   Y
Sbjct: 293 WDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVM--IEKELTPDTYSY 350

Query: 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389
           + +I  LC    +D      D M+ +G  PD + YN I   L KN   ++  + F+++  
Sbjct: 351 DPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRG 410

Query: 390 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 449
               P   +  T I+ L    +   A+ +   ++  G+ P E + N L+  L   G + +
Sbjct: 411 MGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRDGLVEE 470

Query: 450 VRRFAEEM 457
                ++M
Sbjct: 471 AIGLLDDM 478



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 92/216 (42%), Gaps = 12/216 (5%)

Query: 249 WNPEHVLAYETFLITLIRG----KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 304
           + P+ +L  +     LI+G    K +++A + + +++     P +  ++  +    K+N 
Sbjct: 99  YTPDVILCTK-----LIKGFFNFKNIEKASRVMEILESHT-EPDVFAYNAVISGFCKVNR 152

Query: 305 STHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTY 364
              A Q+ + M   GF  +P+++ YN +IG LCN   +    +  DQ++     P  +TY
Sbjct: 153 IEAATQVLNRMKARGF--LPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITY 210

Query: 365 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 424
            ++ E  I    ++E  K   EM+     P        I  +      E A E+   +  
Sbjct: 211 TILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTS 270

Query: 425 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
            G  P   S N LL    N G+  +  +   EM +R
Sbjct: 271 KGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSR 306



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/241 (19%), Positives = 104/241 (43%), Gaps = 10/241 (4%)

Query: 248 EWNPEHVLAY---ETFLITLI----RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV 300
           E  P H+ +Y   ET L+ L+    +  + +E+L FL  +  +   P +   +  +    
Sbjct: 55  EARPAHLQSYDFRETHLMKLLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFF 114

Query: 301 KLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPD 360
              +   A ++ +I+     +  P++  YNAVI   C  + ++   +  ++M   G  PD
Sbjct: 115 NFKNIEKASRVMEILES---HTEPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPD 171

Query: 361 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 420
            +TYN++   L   +++    K   +++ +   PT +     I   +       A+++  
Sbjct: 172 IVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLE 231

Query: 421 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 480
            +L  G+LP   + N ++ G+   G +         + ++      ++ + L +AF N+ 
Sbjct: 232 EMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQG 291

Query: 481 R 481
           +
Sbjct: 292 K 292


>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
 gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
 gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 915

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 160/348 (45%), Gaps = 12/348 (3%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            + +++  L  + R  +  N V+ M+E G+  ++ T+  + DS C   K+++A      M
Sbjct: 325 TYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQM 384

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
              G+  +V+  N+L++  C++      A++ +  ++ + + P+  ++  L++G+ K  N
Sbjct: 385 LEKGLMPNVITYNALINGYCKR-GMIEDAVDVVELMESRKLSPNTRTYNELIKGYCK-SN 442

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           V +A     +M+ER +  P+ V+ Y + +    R    D A + L +M      P    +
Sbjct: 443 VHKAMGVLNKMLER-KVLPD-VVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTY 500

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           ++ +D L K      A  L+D +   G N  PN++MY A+I   C    VD      ++M
Sbjct: 501 TSMIDSLCKSKRVEEACDLFDSLEQKGVN--PNVVMYTALIDGYCKAGKVDEAHLMLEKM 558

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
           +     P+SLT+N +   L  + ++ E      +M+K   QPT       I  LL   + 
Sbjct: 559 LSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDF 618

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           + A   +  +L +G  P   +    +      GRL D    AE+M+ +
Sbjct: 619 DHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLD----AEDMMAK 662



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 80/381 (20%), Positives = 156/381 (40%), Gaps = 41/381 (10%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N MV+   K G  E+    V  + E G+     T+ S+   YC     D A   F+ 
Sbjct: 219 YTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNE 278

Query: 173 MSMHGVEQDVVAVNSLLSAIC-------------------------------RQENQTSR 201
           M + G  ++ VA   L+  +C                               +    + R
Sbjct: 279 MPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSER 338

Query: 202 ALEFLNRVKKI----VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
             E LN VK++    + P+  ++ +L++    +   E+A +  G+M+E+      +V+ Y
Sbjct: 339 KSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLM--PNVITY 396

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317
              +    +   +++A+  + +M+     P  + ++  +    K N    A+ + + M  
Sbjct: 397 NALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSN-VHKAMGVLNKM-- 453

Query: 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
           +   ++P+++ YN++I   C + + D+ +R    M   G  PD  TY  + + L K+KRV
Sbjct: 454 LERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRV 513

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 437
            E    F  + +    P  +     I     A + + A  +   +L    LP   + N L
Sbjct: 514 EEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNAL 573

Query: 438 LVGLRNLGRLSDVRRFAEEML 458
           + GL   G+L +     E+M+
Sbjct: 574 IHGLCADGKLKEATLLEEKMV 594



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 92/451 (20%), Positives = 177/451 (39%), Gaps = 50/451 (11%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWNAVR 137
           +P  V  +  L  D P +A++F  W  +  R   S Y++  ++ +L  NG    ++  +R
Sbjct: 89  SPSHVSSLFSLDLD-PKTALNFSHWISQNPRYKHSVYSYASLLTLLINNGYVGVVFK-IR 146

Query: 138 VMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           ++      S+     + D      K +   + + ++        +   N+LL+++ R   
Sbjct: 147 LLMIKSCDSVGDALYVLDLCRKMNKDERFELKYKLI--------IGCYNTLLNSLARFGL 198

Query: 198 QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER----------- 246
                  ++  ++  V P+  ++  ++ G+ K GNVEEAN+   ++VE            
Sbjct: 199 VDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTS 258

Query: 247 -----------------FEWNP-----EHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
                            F   P      + +AY   +  L   +++DEA+     MK + 
Sbjct: 259 LIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDE 318

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
           CFPT++ ++  +  L      + A+ L   M   G    PN+  Y  +I  LC+    + 
Sbjct: 319 CFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIK--PNIHTYTVLIDSLCSQCKFEK 376

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
                 QM+  G  P+ +TYN +     K   + +       M   +  P        I 
Sbjct: 377 ARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIK 436

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 464
               ++  + A+ + N +LE  +LP   + N L+ G    G      R    M +R ++ 
Sbjct: 437 GYCKSNVHK-AMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVP 495

Query: 465 YEVTMHKLKKAFYNESR--SMRDIFDSLERR 493
            + T   +  +     R     D+FDSLE++
Sbjct: 496 DQWTYTSMIDSLCKSKRVEEACDLFDSLEQK 526



 Score = 43.5 bits (101), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 66/325 (20%), Positives = 125/325 (38%), Gaps = 27/325 (8%)

Query: 68  IESALACTGIIPTPD----LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVL 123
           +E  +   G+ PT      L+H +L+   D   +   F +    G +   + +   +   
Sbjct: 589 LEEKMVKIGLQPTVSTDTILIHRLLK-DGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTY 647

Query: 124 GKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDV 182
            + GR     + +  M+E+GV   L T++S+   Y   G+ + A      M   G E   
Sbjct: 648 CREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQ 707

Query: 183 VAVNSLLS---------------AICRQEN--QTSRALEFLNR-VKKIVDPDGDSFAILL 224
               SL+                 +C   N  +    +E L + V+  V P+  S+  L+
Sbjct: 708 HTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLI 767

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G  + GN+  A K F  M +R E      L +   L    + K+ +EA K +  M    
Sbjct: 768 LGICEVGNLRVAEKVFDHM-QRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVG 826

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
             P L+     +  L K  +      ++  ++  G+    + + +  +I  +     V+ 
Sbjct: 827 HLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGY--YEDELAWKIIIDGVGKQGLVEA 884

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFE 369
            +  F+ M  +G    S TY+++ E
Sbjct: 885 FYELFNVMEKNGCKFSSQTYSLLIE 909


>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
          Length = 2021

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 119/277 (42%), Gaps = 4/277 (1%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F+++ D+ C  GK  EA    D+M   GVE DVV   +L+   C Q         F   V
Sbjct: 278 FSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMV 337

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
           +K   PD  S+  L+ G+ K   +++A   F EM  R EW P+    Y T +  L    +
Sbjct: 338 RKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMC-RKEWIPD-TKTYNTLMYGLCHVGR 395

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY 329
           + +A+     M      P L  +S  LD L K      A+ L   +     NL P++ +Y
Sbjct: 396 LQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEAS--NLNPDIQVY 453

Query: 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389
           N +I  +C   +++     F  +   G  P   TYN++   L K   ++E  K F EM  
Sbjct: 454 NIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDG 513

Query: 390 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 426
           N+  P      T     L  +E   AI++   +L  G
Sbjct: 514 NDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARG 550



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 152/368 (41%), Gaps = 43/368 (11%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  FA +  S      Y   +     M   GV  +V  +N L+++ C   N+   A   
Sbjct: 64  SIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFC-HLNRVGFAFSV 122

Query: 206 LNRVKKIV-DPDGDSFAILLEGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLIT 263
           L ++ K+   PD  +F  L+ G   EG + EA   F +M+ E F+ N   V+ Y T +  
Sbjct: 123 LAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPN---VVTYGTLING 179

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFN-- 321
           L +      A++ LR M+  NC P +  +++ +D L K    T A  L+  MVG G +  
Sbjct: 180 LCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPD 239

Query: 322 -------------------------------LMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
                                          ++P++++++ V+  LC    V       D
Sbjct: 240 IFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVD 299

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
            M+  G  PD +TY  + +       + E  K F  M++  + P  ++  T I       
Sbjct: 300 MMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIH 359

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR----ILIYE 466
           + + A+ ++  +     +P   + N L+ GL ++GRL D      EM+ R     ++ Y 
Sbjct: 360 KIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYS 419

Query: 467 VTMHKLKK 474
           + +  L K
Sbjct: 420 ILLDSLCK 427



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 85/375 (22%), Positives = 155/375 (41%), Gaps = 44/375 (11%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF ++    C  GK  EA+  FD M   G + +VV   +L++ +C+  N TS A+  L  
Sbjct: 137 TFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGN-TSAAIRLLRS 195

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER-------------------FE 248
           +++    PD   +  +++   K+  V EA   F +MV +                    E
Sbjct: 196 MEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCE 255

Query: 249 WN---------------PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           W                P+ V+ + T +  L +  +V EA + + +M      P +  ++
Sbjct: 256 WKHVTTLLNQMVNSKILPD-VVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYT 314

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +D     ++   AV+++D+MV  GF   P++I Y  +I   C    +D     F++M 
Sbjct: 315 TLMDGHCLQSEMDEAVKVFDMMVRKGF--APDVISYTTLINGYCKIHKIDKAMYLFEEMC 372

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
                PD+ TYN +   L    R+ +    FHEM+     P  +  +  +  L      E
Sbjct: 373 RKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLE 432

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR----RFAEEMLNRRILIYEVTM 469
            A+ +   I  + + P     N ++ G+   G L   R      + + L+  +  Y + +
Sbjct: 433 EAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMI 492

Query: 470 HKL-KKAFYNESRSM 483
           H L K+   NE+  +
Sbjct: 493 HGLCKRGLLNEANKL 507



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 85/185 (45%), Gaps = 4/185 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ ++    C  G+  +A+  F  M   G   D+V  + LL ++C+  +    A+  L  
Sbjct: 382 TYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRH-LEEAMALLKA 440

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           ++   ++PD   + I+++G  + G +E A   F  +  +   +P  V  Y   +  L + 
Sbjct: 441 IEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSK-GLHPS-VWTYNIMIHGLCKR 498

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
             ++EA K    M G +C P    ++      ++ N++  A+QL + M+  GF+     +
Sbjct: 499 GLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSADSCFL 558

Query: 328 MYNAV 332
           M + +
Sbjct: 559 MLSVL 563



 Score = 41.6 bits (96), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 2/132 (1%)

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346
           P++  F+  L  + K+   +  + L   M    F + PN+   N +I   C+ + V   F
Sbjct: 63  PSIVDFAKLLTSIAKMKHYSTVLSLSTQM--DSFGVPPNVYTLNILINSFCHLNRVGFAF 120

Query: 347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406
               +++  G  PD  T+  +   L    ++ E    F +MI   +QP  +   T I  L
Sbjct: 121 SVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGL 180

Query: 407 LDADEPEIAIEI 418
                   AI +
Sbjct: 181 CKVGNTSAAIRL 192


>gi|115448805|ref|NP_001048182.1| Os02g0759500 [Oryza sativa Japonica Group]
 gi|46805701|dbj|BAD17102.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47497356|dbj|BAD19395.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113537713|dbj|BAF10096.1| Os02g0759500 [Oryza sativa Japonica Group]
 gi|125583759|gb|EAZ24690.1| hypothetical protein OsJ_08460 [Oryza sativa Japonica Group]
 gi|215704115|dbj|BAG92955.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215766866|dbj|BAG99094.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 555

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 125/520 (24%), Positives = 213/520 (40%), Gaps = 41/520 (7%)

Query: 14  NKIIPSSSSTTTSPTSHNPHRPT-RPR---------FPTHL-DAPYISSSARIICEIL-- 60
           N+  P  + T+  P     H PT + R          PT+L D  + + S RI   ++  
Sbjct: 32  NRSSPRLNPTSVPPPPRQLHLPTLQARRLCSTTHVVLPTNLQDERFAALSDRIYDAVIET 91

Query: 61  AHASSDDIESALACTGIIPTPDLVHEVL-QLSYDSPSSAVDFFRWAGR--GQRLSPYAWN 117
           A  SS+  E+AL   G   T  LV +VL +L YD    A  FF WA    G       +N
Sbjct: 92  AAGSSEGTEAALDALGAELTTPLVADVLHRLRYDE-KLAFRFFVWASHQDGYEHEAATYN 150

Query: 118 LMVDVLG----KNGRFEQMWNAVRVMKEDGVLSLPT--FASIFDSYCGAGKYDEAVMSFD 171
            ++D+L     K  +F  + + +  MK     S+P      I  +Y          ++  
Sbjct: 151 DVIDILSGTRYKARQFGVLCDVLDHMKRRRTRSVPVDDLLGILRAYTEKHLTHLRKLAKK 210

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
                    +  A+N LL A C+       A    +RVK+ +  + ++++IL  GW +  
Sbjct: 211 RRVRMRTPPETDALNVLLDAFCKC-GMVREAEVVFSRVKRKLLGNAETYSILFFGWCRAR 269

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF---PT 288
           + + A K   EM++  +  PE+   Y   + +      V EA      M+ E      PT
Sbjct: 270 DPKRAMKVLEEMIQ-MKHTPEN-FTYNAAIDSFCSAGLVSEARDLFEFMRTEGSTISSPT 327

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
            K +S  +  L K        +L   M   G   MP++  Y  +I  +   D +D  +  
Sbjct: 328 AKTYSIMIAALAKAGQMEECFELISEMRKCG--CMPDVSTYKDLIEGMLLVDKLDAAYCV 385

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
            D+M   G  PD +TYN   + L   ++  +  +    MI+   +P+       + M  +
Sbjct: 386 LDEMAKAGFPPDIVTYNCFLKVLCGLQKADDALELCERMIEAHCEPSVHTYNMLMVMFFE 445

Query: 409 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI---- 464
             EP+ AI IW  + + G      +   ++ GL + GR  D     +E++NR + +    
Sbjct: 446 MREPDRAINIWIEMDKRGCHRAVDTYETMIDGLFDSGRTEDATALLDEVINRGMKLSYKK 505

Query: 465 YEVTMHKLKK-----AFYNESRSMRDIFD-SLERRCKTSQ 498
           ++  M +L       A +  S  MR  ++ ++ RR   +Q
Sbjct: 506 FDAIMLRLSAVGNLGAIHRLSEHMRRFYNVAMSRRFAITQ 545


>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16640, mitochondrial; Flags: Precursor
 gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 140/311 (45%), Gaps = 8/311 (2%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           + +I D  C + + D A+   + M   G+  DVV  NSL+S +C     +          
Sbjct: 189 YNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMT 248

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
           K+ + PD  +F  L++   KEG V EA + + EM+ R   +P+ ++ Y   +  L    +
Sbjct: 249 KREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRR-SLDPD-IVTYSLLIYGLCMYSR 306

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY 329
           +DEA +    M  + CFP +  +S  ++   K     H ++L+  M   G  ++ N + Y
Sbjct: 307 LDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRG--VVRNTVTY 364

Query: 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389
             +I   C    ++     F +MVF G  P+ +TYN++   L  N ++ +      +M K
Sbjct: 365 TILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQK 424

Query: 390 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 449
           N      +     I  +  A E   A +I+  +   G++P   +   +++GL   G    
Sbjct: 425 NGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKG---- 480

Query: 450 VRRFAEEMLNR 460
           +RR A+ +  +
Sbjct: 481 LRREADALFRK 491



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 161/365 (44%), Gaps = 31/365 (8%)

Query: 130 EQMWNAVRVMKEDGVL-------------SLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176
           E + N +R MK D  L             S+  F+ +  +     KYD  +  ++ M M 
Sbjct: 51  EMLRNGIRFMKLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQML 110

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV-DPDGDSFAILLEGWEKEGNVEE 235
           G+  ++   N LL+  CR  +Q S AL FL ++ K+  +P   +F  LL G+ +   V +
Sbjct: 111 GIPHNLCTCNILLNCFCRC-SQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYD 169

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
           A   F +MV    + P +V+ Y T +  L + KQVD AL  L  M+ +   P +  +++ 
Sbjct: 170 ALYMFDQMVG-MGYKP-NVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSL 227

Query: 296 LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
           +  L      + A ++   M      + P++  +NA+I        V     F+++M+  
Sbjct: 228 ISGLCSSGRWSDATRMVSCMTK--REIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRR 285

Query: 356 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 415
              PD +TY+++   L    R+ E E+ F  M+     P  +  +  I     + + E  
Sbjct: 286 SLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHG 345

Query: 416 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR--------RILIYEV 467
           ++++  + + G++    +   L+ G    G+L+     AEE+  R         I+ Y V
Sbjct: 346 MKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLN----VAEEIFRRMVFCGVHPNIITYNV 401

Query: 468 TMHKL 472
            +H L
Sbjct: 402 LLHGL 406



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/334 (22%), Positives = 150/334 (44%), Gaps = 7/334 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F +  G G + +   +N ++D L K+ + +   + +  M++DG+   + T+ S+    C 
Sbjct: 174 FDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCS 233

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGD 218
           +G++ +A      M+   +  DV   N+L+ A C +E + S A EF    +++ +DPD  
Sbjct: 234 SGRWSDATRMVSCMTKREIYPDVFTFNALIDA-CVKEGRVSEAEEFYEEMIRRSLDPDIV 292

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++++L+ G      ++EA + FG MV +  + P+ V+ Y   +    + K+V+  +K   
Sbjct: 293 TYSLLIYGLCMYSRLDEAEEMFGFMVSKGCF-PD-VVTYSILINGYCKSKKVEHGMKLFC 350

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            M           ++  +    +      A +++  MV  G +  PN+I YN ++  LC+
Sbjct: 351 EMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVH--PNIITYNVLLHGLCD 408

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
           N  ++        M  +G   D +TYN+I   + K   V +    +  +      P    
Sbjct: 409 NGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWT 468

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEA 432
             T +  L        A  ++  + E+GILP E 
Sbjct: 469 YTTMMLGLYKKGLRREADALFRKMKEDGILPNEC 502


>gi|356557791|ref|XP_003547194.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 793

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 96/423 (22%), Positives = 172/423 (40%), Gaps = 44/423 (10%)

Query: 81  PDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLS--PYAWNLMVDVLGKNGRFEQMWNAVRV 138
           P LV  VL+   D    A++FF WA R  R S  P  +  M+DVL K    +     +R+
Sbjct: 167 PPLVCAVLRSQADE-RVALNFFYWADRQWRYSHHPVVYYTMLDVLSKTKLCQGARRVLRL 225

Query: 139 MKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           M   G+   P  F  +  SY  AGK   A+    +M   GVE  +   N+ +  + +   
Sbjct: 226 MTRRGIECPPEAFGYVMVSYSRAGKLRNALRVLTLMQKAGVEPSLSICNTTIYVLVKG-G 284

Query: 198 QTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEA-------------------- 236
           +  +AL+FL R++   + PD  ++  L++G+     +E+A                    
Sbjct: 285 KLEKALKFLERMQVTGIKPDIVTYNSLIKGYCDLNRIEDALELIAGLPSKGCPPDKVSYY 344

Query: 237 --------NKTFGE---MVERFEWN----PEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
                    K   E   ++E+  WN    P+ V  Y T +  L +    D+AL FL+  +
Sbjct: 345 TVMGFLCKEKKIEEVKCLMEKMVWNSNLIPDQV-TYNTLIHMLSKHGHADDALAFLKEAQ 403

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
            +        +S  +    +      A  L   M   G N  P+++ Y A++   C    
Sbjct: 404 DKGFHIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSRGCN--PDVVTYTAIVDGFCRLGR 461

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
           +D   +   QM  HG  P++++Y  +   L  + +  E  +  +   ++ W P  +    
Sbjct: 462 IDEAKKILQQMYKHGCKPNTVSYTALLNGLCHSGKSLEAREMINVSEEHWWTPNAITYGA 521

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461
            +  L    +   A ++   ++E G  P     N L+  L    ++ + +++ EE LN+ 
Sbjct: 522 VMHGLRREGKLSEACDLTREMVEKGFFPTPVEINLLIQSLCQNQKVVEAKKYLEECLNKG 581

Query: 462 ILI 464
             I
Sbjct: 582 CAI 584



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 87/420 (20%), Positives = 166/420 (39%), Gaps = 50/420 (11%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
           N  + VL K G+ E+    +  M+  G+   + T+ S+   YC   + ++A+     +  
Sbjct: 274 NTTIYVLVKGGKLEKALKFLERMQVTGIKPDIVTYNSLIKGYCDLNRIEDALELIAGLPS 333

Query: 176 HGVEQDVVAVNSLLSAICRQE-----------------------------------NQTS 200
            G   D V+  +++  +C+++                                       
Sbjct: 334 KGCPPDKVSYYTVMGFLCKEKKIEEVKCLMEKMVWNSNLIPDQVTYNTLIHMLSKHGHAD 393

Query: 201 RALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYET 259
            AL FL   + K    D   ++ ++  + ++G ++EA     +M  R   NP+ V+ Y  
Sbjct: 394 DALAFLKEAQDKGFHIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSR-GCNPD-VVTYTA 451

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG 319
            +    R  ++DEA K L+ M    C P    ++  L+ L     S  A ++  I V   
Sbjct: 452 IVDGFCRLGRIDEAKKILQQMYKHGCKPNTVSYTALLNGLCHSGKSLEAREM--INVSEE 509

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
               PN I Y AV+  L     +        +MV  G FP  +  N++ + L +N++V E
Sbjct: 510 HWWTPNAITYGAVMHGLRREGKLSEACDLTREMVEKGFFPTPVEINLLIQSLCQNQKVVE 569

Query: 380 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 439
            +K+  E +        +N  T I       + E A+ + + +  +G  P   +   L  
Sbjct: 570 AKKYLEECLNKGCAINVVNFTTVIHGFCQIGDMEAALSVLDDMYLSGKHPDAVTYTALFD 629

Query: 440 GLRNLGRLSDVRRFAEEMLNRRI----LIYEVTMHKLKKAFYNESRSMRDIFDSLERRCK 495
            L   GRL +      +ML++ +    + Y   +H+     Y++   + D+ + LE+  K
Sbjct: 630 ALGKKGRLDEAAELIVKMLSKGLDPTPVTYRSVIHR-----YSQWGRVDDMLNLLEKMLK 684



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 79/362 (21%), Positives = 140/362 (38%), Gaps = 44/362 (12%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N ++ +L K+G  +     ++  ++ G  +    +++I  S+C  G+ DEA      M
Sbjct: 378 TYNTLIHMLSKHGHADDALAFLKEAQDKGFHIDKVGYSAIVHSFCQKGRMDEAKSLVIDM 437

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGN 232
              G   DVV   +++   CR   +   A + L ++ K    P+  S+  LL G    G 
Sbjct: 438 YSRGCNPDVVTYTAIVDGFCRL-GRIDEAKKILQQMYKHGCKPNTVSYTALLNGLCHSGK 496

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
             EA +    + E   W P + + Y   +  L R  ++ EA    R M  +  FPT    
Sbjct: 497 SLEAREMI-NVSEEHWWTP-NAITYGAVMHGLRREGKLSEACDLTREMVEKGFFPTPVEI 554

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  +  L +      A +  +  +  G  +  N++ +  VI   C   D++      D M
Sbjct: 555 NLLIQSLCQNQKVVEAKKYLEECLNKGCAI--NVVNFTTVIHGFCQIGDMEAALSVLDDM 612

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
              G  PD++TY  +F+ L K  R+ E  +   +M+     PTP+   + I         
Sbjct: 613 YLSGKHPDAVTYTALFDALGKKGRLDEAAELIVKMLSKGLDPTPVTYRSVIHRYSQ---- 668

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL--IYEVTMH 470
                 W                         GR+ D+    E+ML R+    +Y   + 
Sbjct: 669 ------W-------------------------GRVDDMLNLLEKMLKRQPFRTVYNQVIE 697

Query: 471 KL 472
           KL
Sbjct: 698 KL 699



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/298 (22%), Positives = 132/298 (44%), Gaps = 10/298 (3%)

Query: 98  AVDFFRWA-GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFD 155
           A+ F + A  +G  +    ++ +V    + GR ++  + V  M   G    + T+ +I D
Sbjct: 395 ALAFLKEAQDKGFHIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSRGCNPDVVTYTAIVD 454

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV-D 214
            +C  G+ DEA      M  HG + + V+  +LL+ +C    ++  A E +N  ++    
Sbjct: 455 GFCRLGRIDEAKKILQQMYKHGCKPNTVSYTALLNGLC-HSGKSLEAREMINVSEEHWWT 513

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEA 273
           P+  ++  ++ G  +EG + EA     EMVE+ F   P  +      + +L + ++V EA
Sbjct: 514 PNAITYGAVMHGLRREGKLSEACDLTREMVEKGFFPTPVEI---NLLIQSLCQNQKVVEA 570

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
            K+L     + C   +  F+  +    ++ D   A+ + D M   G +  P+ + Y A+ 
Sbjct: 571 KKYLEECLNKGCAINVVNFTTVIHGFCQIGDMEAALSVLDDMYLSGKH--PDAVTYTALF 628

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
             L     +D       +M+  G  P  +TY  +     +  RV ++     +M+K +
Sbjct: 629 DALGKKGRLDEAAELIVKMLSKGLDPTPVTYRSVIHRYSQWGRVDDMLNLLEKMLKRQ 686


>gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]
          Length = 653

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/388 (22%), Positives = 165/388 (42%), Gaps = 7/388 (1%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F +  G G + +   +  +++ L K G        +R M++     ++  F+++ DS C 
Sbjct: 163 FDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCK 222

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
             +  EA   F  M   G+  ++V  NSL+  +C+              V   + PD  +
Sbjct: 223 DRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFT 282

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
              +++   KEG V EA+     M+ R  E N   V+ Y   +       +VD A+K   
Sbjct: 283 LNTVVDALCKEGMVAEAHDVVDMMIHRGVEPN---VVTYNALMDGHCLRNEVDVAVKVFD 339

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            M  ++C   +  ++  ++   K+     A+ L++ M      L PN + YN +I  LC+
Sbjct: 340 TMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQ--ELTPNTVTYNTLIHGLCH 397

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
              + +    F +MV  G  PD +TY  + + L KN+ + +       +  + W P    
Sbjct: 398 VGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQI 457

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
             T +  +  A E E A ++++ +   G+ P   + N ++ GL   G L++  +   EM 
Sbjct: 458 YTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMN 517

Query: 459 NRRILIYEVTMHKLKKAFYNESRSMRDI 486
                  + T + + + F   + ++R I
Sbjct: 518 KNGCSPNDCTYNLITRGFLRNNEALRTI 545



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 154/356 (43%), Gaps = 48/356 (13%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           +  N +VD L K G   +  + V +M   GV  ++ T+ ++ D +C   + D AV  FD 
Sbjct: 281 FTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDT 340

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M       +V++ N+L++  C+ ++       F    ++ + P+  ++  L+ G    G 
Sbjct: 341 MVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGR 400

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +++A   F EMV R +  P+ ++ Y T    L + + +D+A+  L+ ++G N        
Sbjct: 401 LQDAISLFHEMVARGQI-PD-LVTYRTLSDYLCKNRHLDKAMALLKAIEGSN-------- 450

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
                              WD          P++ +Y  ++  +C   ++++    F  +
Sbjct: 451 -------------------WD----------PDIQIYTTILDGMCRAGELEDARDLFSNL 481

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
              G  P+  TYN++   L K   + E  K F EM KN   P            L  +E 
Sbjct: 482 SSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEA 541

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD--VRRFAEEMLNRRILIYE 466
              IE+   +L  G   ++ S   LLVG+     LSD  + +  +++L + +++YE
Sbjct: 542 LRTIELLEEMLARG-FSVDVSTTTLLVGM-----LSDDGLDQSVKQILCKIVILYE 591



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 137/311 (44%), Gaps = 8/311 (2%)

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV-DPDGDSFAILLEGWEKEG 231
           M   G+  DV  +  +++++C   N+   A   L ++ K+   PD  +F  L+ G   EG
Sbjct: 96  MDSFGIPPDVYTLAIVINSLCHL-NRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEG 154

Query: 232 NVEEANKTFGEMV-ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
            + EA   F +M+ E F+ N   V+ Y T +  L +      A++ LR M+  NC P + 
Sbjct: 155 KIGEALHLFDKMIGEGFQPN---VVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVV 211

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
            FS  +D L K    T A  ++  M+  G +  PN++ YN++I  LC   +  +V    +
Sbjct: 212 VFSTLIDSLCKDRQVTEAFNIFSEMITKGIS--PNIVTYNSLIHGLCKLCEWKHVTTLMN 269

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
           +MV     PD  T N + + L K   V E       MI    +P  +     +      +
Sbjct: 270 EMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRN 329

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 470
           E ++A+++++ ++    +    S N L+ G   +  +       EEM  + +    VT +
Sbjct: 330 EVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYN 389

Query: 471 KLKKAFYNESR 481
            L     +  R
Sbjct: 390 TLIHGLCHVGR 400



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 78/351 (22%), Positives = 145/351 (41%), Gaps = 7/351 (1%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSF 170
           S   +N ++  + K      + +  R M   G+   + T A + +S C   + D A  + 
Sbjct: 69  STVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSAL 128

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEK 229
             +   G + D     +L+  +C  E +   AL   ++ + +   P+  ++  L+ G  K
Sbjct: 129 AKILKLGHQPDATTFTTLIRGLC-VEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCK 187

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
            GN   A +    M E+    P +V+ + T + +L + +QV EA      M  +   P +
Sbjct: 188 VGNTSAAIRLLRSM-EQGNCQP-NVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNI 245

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
             +++ +  L KL +  H   L + MV     +MP++   N V+  LC    V       
Sbjct: 246 VTYNSLIHGLCKLCEWKHVTTLMNEMV--DSKIMPDVFTLNTVVDALCKEGMVAEAHDVV 303

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 409
           D M+  G  P+ +TYN + +       V    K F  M+  +     ++  T I      
Sbjct: 304 DMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKI 363

Query: 410 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
              + A+ ++  +    + P   + N L+ GL ++GRL D      EM+ R
Sbjct: 364 QSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVAR 414



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/263 (21%), Positives = 101/263 (38%), Gaps = 6/263 (2%)

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           ++EA  TF  M+ +    P   + +   L ++ + K     L   R M      P +   
Sbjct: 51  LDEALSTFNRMLHK--QPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTL 108

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  ++ L  LN    A      ++ +G    P+   +  +I  LC    +      FD+M
Sbjct: 109 AIVINSLCHLNRVDFAFSALAKILKLGHQ--PDATTFTTLIRGLCVEGKIGEALHLFDKM 166

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
           +  G  P+ +TY  +   L K        +    M +   QP  +  +T I  L    + 
Sbjct: 167 IGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQV 226

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
             A  I++ ++  GI P   + N L+ GL  L     V     EM++ +I+    T++ +
Sbjct: 227 TEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTV 286

Query: 473 KKAFYNES--RSMRDIFDSLERR 493
             A   E       D+ D +  R
Sbjct: 287 VDALCKEGMVAEAHDVVDMMIHR 309


>gi|115458614|ref|NP_001052907.1| Os04g0446100 [Oryza sativa Japonica Group]
 gi|38344550|emb|CAD40961.2| OSJNBa0027P08.18 [Oryza sativa Japonica Group]
 gi|113564478|dbj|BAF14821.1| Os04g0446100 [Oryza sativa Japonica Group]
          Length = 583

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 139/346 (40%), Gaps = 47/346 (13%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQM------WNAVRVMKEDGVLSLPTFASIFDSYCGAG 161
           G R+  YA+N ++  L   GR   +      W   RV   D    + +F  +    C  G
Sbjct: 210 GCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPD----VWSFNVVIKGVCRVG 265

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK--IVDPDGDS 219
           +  +A+   + M+  G   D V  N L+  +CR  N+ SR  E L R+++  +  P+  +
Sbjct: 266 QVQKALELVERMNEFGCSPDTVTHNILVDGLCR-TNEVSRGHEVLRRLQRDGVCMPNVVT 324

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVER------FEWN----------------------- 250
           F  ++ G+ K G +E+A   + +MV          +N                       
Sbjct: 325 FTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMT 384

Query: 251 ----PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
               P  V+ + + +    R  Q+D+AL+    M      P +  FS  +  L K N S 
Sbjct: 385 RLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSD 444

Query: 307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM 366
            A+ L + +  +  ++ P   +YN VI +LC    VD        M   G  PD  TY +
Sbjct: 445 EAIGLLNEL-NLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTI 503

Query: 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
           +        R+ E   FFHEM++    P  +     I+ LL A  P
Sbjct: 504 LIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCLLKAGMP 549



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 128/270 (47%), Gaps = 11/270 (4%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVL--SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           N++VD L +     +    +R ++ DGV   ++ TF S+   YC AGK ++A+  ++ M 
Sbjct: 290 NILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMV 349

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNV 233
             G+  + V  N L++   +  +  S A+E   ++ ++   PD  +F+ L++G+ + G +
Sbjct: 350 ASGIMPNTVTYNVLINGYGKVGDLGS-AVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQL 408

Query: 234 EEANKTFGEMVE-RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK-GENCFPTLKF 291
           ++A + + +M + R + N   V  +   + +L +  + DEA+  L  +    +  P    
Sbjct: 409 DDALRIWSDMAQHRIQPN---VYTFSIIIHSLCKQNRSDEAIGLLNELNLRPDIAPQAFI 465

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           ++  +D+L K      A  +   M   G    P+   Y  +I   C    +     FF +
Sbjct: 466 YNPVIDVLCKCGKVDEANLIRKGMEEKGCR--PDKYTYTILIIGYCMKSRISEAIMFFHE 523

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVE 381
           MV  G  PDS+T N    CL+K    +EV+
Sbjct: 524 MVEAGCSPDSITVNCFISCLLKAGMPNEVD 553



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 79/362 (21%), Positives = 153/362 (42%), Gaps = 30/362 (8%)

Query: 112 SPYAWNLMVDVLGKNGR-------FEQMWNAVRVMKEDGVLSLPTFASIFDSYCG-AGKY 163
           S ++   ++ VL ++GR       F+QM          G      F S   S C  A   
Sbjct: 143 SAHSCQQIIVVLCRSGRQADALQLFDQM------TTHYGYSPDARFLSFLVSSCTCANLL 196

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAI 222
           D +       S  G   +  A N L+S++  +         F   ++ ++  PD  SF +
Sbjct: 197 DASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNV 256

Query: 223 LLEGWEKEGNVEEANKTFGEMVER---FEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           +++G  + G V++A     E+VER   F  +P+ V  +   +  L R  +V    + LR 
Sbjct: 257 VIKGVCRVGQVQKAL----ELVERMNEFGCSPDTV-THNILVDGLCRTNEVSRGHEVLRR 311

Query: 280 MKGEN-CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
           ++ +  C P +  F++ +    K      A+ +++ MV  G  +MPN + YN +I     
Sbjct: 312 LQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASG--IMPNTVTYNVLINGYGK 369

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
             D+ +    + QM      PD +T++ + +   +  ++ +  + + +M ++  QP    
Sbjct: 370 VGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYT 429

Query: 399 CATAITMLLDADEPEIAIEIWNYI-LENGILPLEASANELLVGLRNLGRLSD---VRRFA 454
            +  I  L   +  + AI + N + L   I P     N ++  L   G++ +   +R+  
Sbjct: 430 FSIIIHSLCKQNRSDEAIGLLNELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGM 489

Query: 455 EE 456
           EE
Sbjct: 490 EE 491



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 68/329 (20%), Positives = 129/329 (39%), Gaps = 56/329 (17%)

Query: 158 CGAGKYDEAVMSFDVMSMH-GVEQDVVAVNSLLSAICRQENQT-------SRALEFLNRV 209
           C +G+  +A+  FD M+ H G   D   ++ L+S+ C   N         S+A EF  RV
Sbjct: 155 CRSGRQADALQLFDQMTTHYGYSPDARFLSFLVSS-CTCANLLDASATLLSKASEFGCRV 213

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
           +        ++  L+      G V +    F   ++   ++P+ V ++   +  + R  Q
Sbjct: 214 EAY------AYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPD-VWSFNVVIKGVCRVGQ 266

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY 329
           V +AL+ +  M    C P     +  +D L + N+ +   ++   +   G   MPN++ +
Sbjct: 267 VQKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDGV-CMPNVVTF 325

Query: 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389
            +VI   C    +++    ++ MV  G  P+++TYN++     K   +    + + +M  
Sbjct: 326 TSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQM-- 383

Query: 390 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 449
                T L C                             P   + + L+ G    G+L D
Sbjct: 384 -----TRLRCP----------------------------PDVVTFSSLIDGYCRCGQLDD 410

Query: 450 VRRFAEEMLNRRI----LIYEVTMHKLKK 474
             R   +M   RI      + + +H L K
Sbjct: 411 ALRIWSDMAQHRIQPNVYTFSIIIHSLCK 439



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/251 (18%), Positives = 103/251 (41%), Gaps = 5/251 (1%)

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
           + P   S   ++    + G   +A + F +M   + ++P+    + +FL++      + +
Sbjct: 140 ITPSAHSCQQIIVVLCRSGRQADALQLFDQMTTHYGYSPD--ARFLSFLVSSCTCANLLD 197

Query: 273 ALKFLRVMKGE-NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA 331
           A   L     E  C      ++  +  L+        V L++  +       P++  +N 
Sbjct: 198 ASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRV-YSPDVWSFNV 256

Query: 332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
           VI  +C    V       ++M   G  PD++T+N++ + L +   V    +    + ++ 
Sbjct: 257 VIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDG 316

Query: 392 -WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 450
              P  +   + I+    A + E A+ ++N ++ +GI+P   + N L+ G   +G L   
Sbjct: 317 VCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSA 376

Query: 451 RRFAEEMLNRR 461
               ++M   R
Sbjct: 377 VEVYQQMTRLR 387


>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 142/342 (41%), Gaps = 40/342 (11%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F     +G   S  ++N ++      G++E+    +  M + G+   + TF  + D+ C 
Sbjct: 238 FEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCK 297

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
            GK  EA     VM   G+  D+V  NSL+   C   +  S    F++   K  +PD  S
Sbjct: 298 EGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVIS 357

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           + +L+ G+ K   VEEA K + EM+        +V+ Y++ L  +    +VD+A K   V
Sbjct: 358 YNVLINGYSKTLKVEEAMKLYNEML--LVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSV 415

Query: 280 MKGE-------------------NC-FPTLKFFSNA---------------LDILVKLND 304
           MK                     +C F  +K F+                 +D L K   
Sbjct: 416 MKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGK 475

Query: 305 STHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTY 364
              A +L++ +   G    PN++ Y  +I   C    VD       +M  +G  PD +TY
Sbjct: 476 LETAWELFEKLSNEGHE--PNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITY 533

Query: 365 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406
           N +     ++ ++ EV +  H M + +  P  + C+  + ML
Sbjct: 534 NTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDML 575



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 83/371 (22%), Positives = 163/371 (43%), Gaps = 10/371 (2%)

Query: 94  SPSSAVDFFRWAGRGQRL-SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFA 151
           + + A+ FF    R     S  ++N ++  L K   + Q+++    M+  G+ S   T  
Sbjct: 49  TATHALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLN 108

Query: 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK 211
            + +  C   +  E   +F  +   G   ++V  N+L+  +C  E++ S A     R++K
Sbjct: 109 ILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLC-MEHRISEATRLFLRMQK 167

Query: 212 I-VDPDGDSFAILLEGWEKEGNVEEANKTFGEM---VERFEWNPE-HVLAYETFLITLIR 266
           +   PD  ++  L++G    GN+  A K   EM   + R+E N + +V+ Y   +  L +
Sbjct: 168 LGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCK 227

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNL 326
             + DEA +    MK +   P++  +++ +           + +L D M+  G  L P++
Sbjct: 228 VGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQG--LQPDM 285

Query: 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 386
           + +N +I  LC    V    +    M+  G  PD +TYN + E       ++   + F  
Sbjct: 286 VTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVS 345

Query: 387 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 446
           M     +P  ++    I       + E A++++N +L  G  P   + + LL G+   G+
Sbjct: 346 MPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGK 405

Query: 447 LSDVRRFAEEM 457
           + D ++    M
Sbjct: 406 VDDAKKLFSVM 416



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 156/346 (45%), Gaps = 9/346 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC--RQENQTSRALEFL 206
           T+  I D  C  G+ DEA   F+ M   G+   +++ NSL+   C   +  ++ R L+ +
Sbjct: 217 TYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEM 276

Query: 207 NRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
             + + + PD  +F +L++   KEG V EA K  G M+E     P+ ++ Y + +     
Sbjct: 277 --LDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIES-GIVPD-LVTYNSLIEGFCM 332

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNL 326
              ++ A +    M  + C P +  ++  ++   K      A++L++ M+ +G    PN+
Sbjct: 333 VGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKR--PNV 390

Query: 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 386
           I Y++++  +     VD+  + F  M  HG   +S TY +  + L KN  + E  K F E
Sbjct: 391 ITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTE 450

Query: 387 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 446
           +  + ++    N    I  L  A + E A E++  +   G  P   +   ++ G    G+
Sbjct: 451 LKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQ 510

Query: 447 LSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLER 492
           +       ++M         +T + L + FY ES  + ++   L R
Sbjct: 511 VDKANVLIQKMEANGCTPDIITYNTLMRGFY-ESNKLEEVVQLLHR 555



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 142/327 (43%), Gaps = 10/327 (3%)

Query: 138 VMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           +M+     SL +F  +         Y +    ++ M + G+  D   +N LL+ +C    
Sbjct: 60  MMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLCNVNR 119

Query: 198 QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
                  F   +++   P+  ++  L++G   E  + EA + F  M ++    P+ V+ Y
Sbjct: 120 LREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRM-QKLGCTPD-VVTY 177

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGE------NCFPTLKFFSNALDILVKLNDSTHAVQL 311
            T +  L     ++ ALK  + M  +      NC P +  ++  +D L K+     A QL
Sbjct: 178 GTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQL 237

Query: 312 WDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECL 371
           ++ M   G  ++P++I YN++I   C     +   R  D+M+  G  PD +T+N++ + L
Sbjct: 238 FEEMKTQG--MIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTL 295

Query: 372 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 431
            K  +V E +K    MI++   P  +   + I       +   A E++  +   G  P  
Sbjct: 296 CKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDV 355

Query: 432 ASANELLVGLRNLGRLSDVRRFAEEML 458
            S N L+ G     ++ +  +   EML
Sbjct: 356 ISYNVLINGYSKTLKVEEAMKLYNEML 382



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 63/311 (20%), Positives = 127/311 (40%), Gaps = 14/311 (4%)

Query: 193 CRQENQT-SRALEFLN-RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
           C+  N T + AL F +  ++    P   SF  LL G  K  +  +    + +M  R    
Sbjct: 43  CKTGNVTATHALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQM--RLSGL 100

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
                     L  L    ++ E       +      P +  ++  +  L   +  + A +
Sbjct: 101 SSDRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATR 160

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH------GAFPDSLTY 364
           L+  M  +G    P+++ Y  +I  LC   +++   +   +M+           P+ +TY
Sbjct: 161 LFLRMQKLGCT--PDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITY 218

Query: 365 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 424
           N+I + L K  R  E ++ F EM      P+ ++  + I     A + E +  + + +L+
Sbjct: 219 NIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLD 278

Query: 425 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF--YNESRS 482
            G+ P   + N L+  L   G++ + ++    M+   I+   VT + L + F    +  S
Sbjct: 279 QGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNS 338

Query: 483 MRDIFDSLERR 493
            R++F S+  +
Sbjct: 339 ARELFVSMPSK 349


>gi|242075962|ref|XP_002447917.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
 gi|241939100|gb|EES12245.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
          Length = 550

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/342 (21%), Positives = 143/342 (41%), Gaps = 39/342 (11%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP--TFASIFDSYCGAGKYDE 165
           G+R+ PYA+N ++++L   GR +          +DG+ S    +F  +    C  G + +
Sbjct: 177 GRRIEPYAYNNLLNLLIARGRAQDAVALFESWIQDGLYSPDGWSFNVVIKGVCRVGNFQK 236

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK--IVDPDGDSFAIL 223
           A+   + M+  G   D +  N L+  +CR + Q +R  + L R+++  +  P+  ++  +
Sbjct: 237 ALELVERMTEFGCSPDTITHNILVDGLCRAK-QVNRGHDLLRRLQRDGVCMPNVVTYTSV 295

Query: 224 LEGWEKEGNVEEANKTFGEMVER---------------------------------FEWN 250
           + G+ K G +E+A   + +M+E                                      
Sbjct: 296 ISGYCKAGRMEDALSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLILRRC 355

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P  V+ + + +    R  Q+D+A++  + M   +  P +  FS  +  L K N S  A+ 
Sbjct: 356 PPDVVTFSSLIDGYCRCGQLDDAMRIWKEMGQHHIQPNVYTFSIIIHSLCKQNRSAEALG 415

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
               +  +  ++ P   +YN VI +LC    V+        M   G  PD  TY ++   
Sbjct: 416 FLREL-NMRADIAPQTFIYNPVIDILCKGGQVEEANLIVTDMEEKGCHPDKYTYTILIIG 474

Query: 371 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
                R+ E    FH+M++   +P  +   + I+ +L A  P
Sbjct: 475 HCMKGRIPEAITLFHKMVETGCRPDKITVNSFISCVLKAGMP 516



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 63/271 (23%), Positives = 125/271 (46%), Gaps = 7/271 (2%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVL--SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           N++VD L +  +  +  + +R ++ DGV   ++ T+ S+   YC AG+ ++A+  ++ M 
Sbjct: 257 NILVDGLCRAKQVNRGHDLLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDALSVYNDML 316

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G   + V  N L++   +  +  S    +   + +   PD  +F+ L++G+ + G ++
Sbjct: 317 ESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLILRRCPPDVVTFSSLIDGYCRCGQLD 376

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-NCFPTLKFFS 293
           +A + + EM +     P +V  +   + +L +  +  EAL FLR +    +  P    ++
Sbjct: 377 DAMRIWKEMGQH-HIQP-NVYTFSIIIHSLCKQNRSAEALGFLRELNMRADIAPQTFIYN 434

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +DIL K      A  +   M   G +  P+   Y  +I   C    +      F +MV
Sbjct: 435 PVIDILCKGGQVEEANLIVTDMEEKGCH--PDKYTYTILIIGHCMKGRIPEAITLFHKMV 492

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
             G  PD +T N    C++K    +EV++  
Sbjct: 493 ETGCRPDKITVNSFISCVLKAGMPNEVDQIM 523



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 60/304 (19%), Positives = 119/304 (39%), Gaps = 46/304 (15%)

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
           V P   S++ ++    + G   +A K F +M ++  + P+ V  +     +      +D 
Sbjct: 107 VPPSEQSYSHVITLLCRSGRHRDALKLFDQMTDQSGYLPDAVF-FSFVAGSCTNAGLLDA 165

Query: 273 ALKFLRVMK--GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYN 330
           A+  L      G    P    ++N L++L+    +  AV L++  +  G    P+   +N
Sbjct: 166 AVTLLTKASQFGRRIEPYA--YNNLLNLLIARGRAQDAVALFESWIQDGL-YSPDGWSFN 222

Query: 331 AVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 390
            VI  +C   +        ++M   G  PD++T+N++ + L + K+V+        + ++
Sbjct: 223 VVIKGVCRVGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNRGHDLLRRLQRD 282

Query: 391 E-WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL-------- 441
               P  +   + I+    A   E A+ ++N +LE+G  P   + N L+ G         
Sbjct: 283 GVCMPNVVTYTSVISGYCKAGRMEDALSVYNDMLESGTRPNTVTYNVLINGYGKALDMES 342

Query: 442 -----RNL----------------------GRLSDVRRFAEEM----LNRRILIYEVTMH 470
                R L                      G+L D  R  +EM    +   +  + + +H
Sbjct: 343 AVRMYRQLILRRCPPDVVTFSSLIDGYCRCGQLDDAMRIWKEMGQHHIQPNVYTFSIIIH 402

Query: 471 KLKK 474
            L K
Sbjct: 403 SLCK 406


>gi|388516039|gb|AFK46081.1| unknown [Lotus japonicus]
          Length = 327

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 143/312 (45%), Gaps = 6/312 (1%)

Query: 139 MKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198
           +++   +SL T+  + ++    G  D+ +   D M   G+  D+   N+++  +CR E  
Sbjct: 17  LQQTNPISLVTYTILIEATILKGGVDDVMKLLDEMIESGLRPDMFIFNAVVGGMCR-EGL 75

Query: 199 TSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
             RA EF+  +  K   PD  S++ILL G   +   E+  K   +M+ +      +V+ Y
Sbjct: 76  VDRAFEFIRYISAKGYAPDVISYSILLRGLLNQRKWEDGEKLMSDMLSK--GCEPNVVTY 133

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317
              + +L R  +V+EA+  L+VMK +   P    +   +    K +    A++  + M+ 
Sbjct: 134 SILISSLCRDGKVEEAVSLLKVMKEQGLTPDAYSYDPLIAAFCKESRVDLAIEFLESMIS 193

Query: 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
            G   +P+++ YN ++  LC N   D   + F+++   G  P+  +YN +F  L  +   
Sbjct: 194 DG--CLPDIVNYNTILSTLCKNGKADEALKIFEKLGEVGCPPNVSSYNTLFSALWSSGHK 251

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 437
                   EM+  +  P  +   + I+ L      + AIE+   +  +   P   S N +
Sbjct: 252 IRALGMILEMLSKDIDPDEITYNSLISCLCRDAMVDQAIELLVDMESSVYQPSVISYNIV 311

Query: 438 LVGLRNLGRLSD 449
           L+GL  + R+SD
Sbjct: 312 LLGLSKVHRISD 323



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 110/254 (43%), Gaps = 4/254 (1%)

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++ IL+E    +G V++  K   EM+E     P+  + +   +  + R   VD A +F+R
Sbjct: 27  TYTILIEATILKGGVDDVMKLLDEMIES-GLRPDMFI-FNAVVGGMCREGLVDRAFEFIR 84

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            +  +   P +  +S  L  L+         +L   M+  G    PN++ Y+ +I  LC 
Sbjct: 85  YISAKGYAPDVISYSILLRGLLNQRKWEDGEKLMSDMLSKGCE--PNVVTYSILISSLCR 142

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
           +  V+        M   G  PD+ +Y+ +     K  RV    +F   MI +   P  +N
Sbjct: 143 DGKVEEAVSLLKVMKEQGLTPDAYSYDPLIAAFCKESRVDLAIEFLESMISDGCLPDIVN 202

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
             T ++ L    + + A++I+  + E G  P  +S N L   L + G          EML
Sbjct: 203 YNTILSTLCKNGKADEALKIFEKLGEVGCPPNVSSYNTLFSALWSSGHKIRALGMILEML 262

Query: 459 NRRILIYEVTMHKL 472
           ++ I   E+T + L
Sbjct: 263 SKDIDPDEITYNSL 276



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 123/275 (44%), Gaps = 9/275 (3%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G R   + +N +V  + + G  ++ +  +R +   G    + +++ +        K+++ 
Sbjct: 55  GLRPDMFIFNAVVGGMCREGLVDRAFEFIRYISAKGYAPDVISYSILLRGLLNQRKWEDG 114

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLE 225
                 M   G E +VV  + L+S++CR + +   A+  L  +K + + PD  S+  L+ 
Sbjct: 115 EKLMSDMLSKGCEPNVVTYSILISSLCR-DGKVEEAVSLLKVMKEQGLTPDAYSYDPLIA 173

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
            + KE  V+ A +    M+   +     ++ Y T L TL +  + DEALK    +    C
Sbjct: 174 AFCKESRVDLAIEFLESMIS--DGCLPDIVNYNTILSTLCKNGKADEALKIFEKLGEVGC 231

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQ-LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
            P +  ++    +   L  S H ++ L  I+  +  ++ P+ I YN++I  LC +  VD 
Sbjct: 232 PPNVSSYNT---LFSALWSSGHKIRALGMILEMLSKDIDPDEITYNSLISCLCRDAMVDQ 288

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
                  M      P  ++YN++   L K  R+ +
Sbjct: 289 AIELLVDMESSVYQPSVISYNIVLLGLSKVHRISD 323



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 83/172 (48%), Gaps = 5/172 (2%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           + Q L+P  Y+++ ++    K  R +     +  M  DG L  +  + +I  + C  GK 
Sbjct: 157 KEQGLTPDAYSYDPLIAAFCKESRVDLAIEFLESMISDGCLPDIVNYNTILSTLCKNGKA 216

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
           DEA+  F+ +   G   +V + N+L SA+    ++       L  + K +DPD  ++  L
Sbjct: 217 DEALKIFEKLGEVGCPPNVSSYNTLFSALWSSGHKIRALGMILEMLSKDIDPDEITYNSL 276

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK 275
           +    ++  V++A +   +M E   + P  V++Y   L+ L +  ++ +A++
Sbjct: 277 ISCLCRDAMVDQAIELLVDM-ESSVYQP-SVISYNIVLLGLSKVHRISDAIE 326


>gi|356546522|ref|XP_003541675.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 789

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 90/388 (23%), Positives = 172/388 (44%), Gaps = 17/388 (4%)

Query: 81  PDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLS--PYAWNLMVDVLGKNGRFEQMWNAVRV 138
           P LV  VL+   D    A++FF WA R  R S  P  +  ++DVL K    +     +R+
Sbjct: 163 PSLVCAVLRSQADE-RVALNFFYWADRQWRYSHHPLVYYTLLDVLSKTKLCQGARRVLRL 221

Query: 139 MKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI---CR 194
           M   G+ LS   F  +  SY  AGK   A+    +M   GVE ++   N+ +  +   C+
Sbjct: 222 MTRRGIELSPEAFGCVMVSYSRAGKLRNALRVLTLMQKAGVEPNLSICNTTIYVLVKGCK 281

Query: 195 QENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH 253
            E    +AL FL R++   + PD  ++  L++G+     +E+A +    +  +    P  
Sbjct: 282 LE----KALRFLERMQVTGIKPDIVTYNSLIKGYCDLNRIEDALELIAGLPSK--GCPPD 335

Query: 254 VLAYETFLITLIRGKQVDEALKFL-RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
            ++Y T +  L + K++++    + ++++  N  P    ++  + +L K   +  A+   
Sbjct: 336 KVSYYTVMGFLCKEKKIEQVKCLMEKMVQDSNLIPDQVTYNTLIHMLSKHGHADDALAFL 395

Query: 313 DIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 372
                 GF++  + + Y+A++   C    +D        M      PD +TY  I +   
Sbjct: 396 KEAEDKGFHI--DKVGYSAIVHSFCQKGRMDEAKSLVIDMYSRSCNPDVVTYTAIVDGFC 453

Query: 373 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 432
           +  R+ E +K   +M K+  +P  ++    +  L  + +   A E+ N   E+   P   
Sbjct: 454 RLGRIDEAKKMLQQMYKHGCKPNTVSYTALLNGLCHSGKSLEAREMINVSEEHWWTPNAI 513

Query: 433 SANELLVGLRNLGRLSDVRRFAEEMLNR 460
           +   ++ G R  G+LS+      EM+ +
Sbjct: 514 TYGVVMHGFRREGKLSEACDLTREMVEK 541



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/365 (19%), Positives = 147/365 (40%), Gaps = 47/365 (12%)

Query: 98  AVDFFRWA-GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFD 155
           A+ F + A  +G  +    ++ +V    + GR ++  + V  M        + T+ +I D
Sbjct: 391 ALAFLKEAEDKGFHIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSRSCNPDVVTYTAIVD 450

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV-D 214
            +C  G+ DEA      M  HG + + V+  +LL+ +C    ++  A E +N  ++    
Sbjct: 451 GFCRLGRIDEAKKMLQQMYKHGCKPNTVSYTALLNGLC-HSGKSLEAREMINVSEEHWWT 509

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEA 273
           P+  ++ +++ G+ +EG + EA     EMVE+ F   P  +      + +L + ++V EA
Sbjct: 510 PNAITYGVVMHGFRREGKLSEACDLTREMVEKGFFPTPVEI---NLLIQSLCQNQKVVEA 566

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
            K+L     + C                                       N++ +  VI
Sbjct: 567 KKYLEECLNKGC-------------------------------------AINVVNFTTVI 589

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
              C   D++      + M      PD++TY  +F+ L K  R+ E  +   +M+     
Sbjct: 590 HGFCQIGDMEAALSVLEDMYLSNKHPDAVTYTALFDALGKKGRLDEAAELIVKMLSKGLD 649

Query: 394 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 453
           PTP+   + I         +  + + + +++    P     N ++  L + G L +  + 
Sbjct: 650 PTPVTFRSVIHRYCQWGRVDDMLNLLDRMVKRK--PFRTIYNHVIEKLCDFGNLEEAEKL 707

Query: 454 AEEML 458
             ++L
Sbjct: 708 LGKVL 712


>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
          Length = 768

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 163/370 (44%), Gaps = 13/370 (3%)

Query: 82  DLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE 141
           +++H + Q   D   S     +   RG   + +  N+ +  L ++GR E+   AV +++ 
Sbjct: 216 NVLHALCQKG-DVMESGALLAKVLKRGMSANKFTCNIWIRGLCEDGRLEE---AVALVER 271

Query: 142 DGVLSLP---TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198
            G    P   T+ ++    C   K  EA      M   G   D    N+++   C+    
Sbjct: 272 MGAYVAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKS-GM 330

Query: 199 TSRALEFL-NRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
              A E L + V K   PD  ++  L+ G   EG++E A + F E   + +  P+ V+ Y
Sbjct: 331 LQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAK-DLKPDLVV-Y 388

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317
            + +  L R   +  AL+ +  M  E C P +  ++  ++ L K+ + + A  + +  + 
Sbjct: 389 NSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIV 448

Query: 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
            G+  +P++  +N +I   C    +D+  +  ++M  +G  PD +TYN +   L K  + 
Sbjct: 449 KGY--LPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKA 506

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 437
            EV + F EMI    +P  +     I      ++ E A  +   + ++G++P   S N L
Sbjct: 507 KEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTL 566

Query: 438 LVGLRNLGRL 447
           + G    G L
Sbjct: 567 IHGFCRNGDL 576



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/369 (21%), Positives = 156/369 (42%), Gaps = 13/369 (3%)

Query: 95  PSSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE----DGVLSLPT 149
           P  A+   R  + RG    P A+  +V  L  +G     +NA  +  E    D    + T
Sbjct: 157 PHVALRLLRSLSERGCDAKPAAYCTVVRGLYAHG---HGYNARHLFDEMLGRDVFPDVAT 213

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F ++  + C  G   E+      +   G+  +    N  +  +C ++ +   A+  + R+
Sbjct: 214 FNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLC-EDGRLEEAVALVERM 272

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
              V PD  ++  L+ G  K+  V+EA +  G M+ +    P+    Y T +    +   
Sbjct: 273 GAYVAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQ-GCIPDD-FTYNTIIDGYCKSGM 330

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY 329
           + EA + L+    +   P    + + ++ L    D   A++L++       +L P+L++Y
Sbjct: 331 LQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFN--EAQAKDLKPDLVVY 388

Query: 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389
           N+++  LC    + +  +  ++MV  G  PD  TYN+I   L K   + +     ++ I 
Sbjct: 389 NSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIV 448

Query: 390 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 449
             + P      T I       + + A+++   +   GI P   + N +L GL   G+  +
Sbjct: 449 KGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKE 508

Query: 450 VRRFAEEML 458
           V    EEM+
Sbjct: 509 VNETFEEMI 517



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 132/308 (42%), Gaps = 21/308 (6%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LP---TFASIFDSYCGAGKYDEAVMS 169
           + +N++++ L K G    + +A  VM +  V   LP   TF ++ D YC   K D A+  
Sbjct: 421 WTYNIIINGLCKMG---NISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQL 477

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK 229
            + M  +G+  DV+  NS+L+ +C+          F   + K   P+  ++ IL+E + K
Sbjct: 478 VERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCK 537

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
              +EEA+     M +     P+ V ++ T +    R   +D A    + +  +    T 
Sbjct: 538 INQLEEASGVIVRMCQD-GLVPDAV-SFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATA 595

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVG--IGFNLMPNLIMYNAVIGLLCNNDDVDNVFR 347
             F    +IL+    S   +Q+ + + G  I     P+L  Y  ++  LC   +VD  + 
Sbjct: 596 DTF----NILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRILVDGLCKAANVDRAYA 651

Query: 348 FFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 407
              +M+  G  P   T+  +   L  N RV E     H M++    P        +  +L
Sbjct: 652 HLAEMISKGFVPSMATFGRMLNLLAMNHRVSEAVAIIHIMVRMGVVP------EVVDTIL 705

Query: 408 DADEPEIA 415
             D+ EIA
Sbjct: 706 STDKKEIA 713



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 89/433 (20%), Positives = 175/433 (40%), Gaps = 48/433 (11%)

Query: 51  SSARIICEILAHASSDD--IESALACT---GIIPTPDLV-HEVLQLSYDSPSSAVDFFRW 104
           S+ +  C I      +D  +E A+A     G    PD+V +  L       S   +  ++
Sbjct: 243 SANKFTCNIWIRGLCEDGRLEEAVALVERMGAYVAPDVVTYNTLMRGLCKDSKVQEAAQY 302

Query: 105 AGR--GQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCG 159
            GR   Q   P  + +N ++D   K+G  ++    ++     G V    T+ S+ +  C 
Sbjct: 303 LGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEATELLKDAVFKGFVPDRVTYCSLINGLCA 362

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGD 218
            G  + A+  F+      ++ D+V  NSL+  +CRQ      AL+ +N  V++   PD  
Sbjct: 363 EGDIERALELFNEAQAKDLKPDLVVYNSLVKGLCRQ-GLILHALQVMNEMVEEGCHPDIW 421

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++ I++ G  K GN+ +A     + + +  + P+ V  + T +    +  ++D AL+ + 
Sbjct: 422 TYNIIINGLCKMGNISDAAVVMNDAIVK-GYLPD-VFTFNTLIDGYCKRLKLDSALQLVE 479

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV-------GIGFN---------- 321
            M      P +  +++ L+ L K   +    + ++ M+        I +N          
Sbjct: 480 RMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKIN 539

Query: 322 ----------------LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYN 365
                           L+P+ + +N +I   C N D+D  +  F ++   G    + T+N
Sbjct: 540 QLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFN 599

Query: 366 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 425
           ++         +   EK F EMI   ++P        +  L  A   + A      ++  
Sbjct: 600 ILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRILVDGLCKAANVDRAYAHLAEMISK 659

Query: 426 GILPLEASANELL 438
           G +P  A+   +L
Sbjct: 660 GFVPSMATFGRML 672



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 72/336 (21%), Positives = 140/336 (41%), Gaps = 10/336 (2%)

Query: 98  AVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           A++ F  A + + L P    +N +V  L + G        +  M E+G    + T+  I 
Sbjct: 369 ALELFNEA-QAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIII 427

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIV 213
           +  C  G   +A +  +   + G   DV   N+L+   C++    S AL+ + R+    +
Sbjct: 428 NGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDS-ALQLVERMWTYGI 486

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
            PD  ++  +L G  K G  +E N+TF EM+   +    + + Y   +    +  Q++EA
Sbjct: 487 APDVITYNSVLNGLCKAGKAKEVNETFEEMI--LKGCRPNAITYNILIENFCKINQLEEA 544

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
              +  M  +   P    F+  +    +  D   A  L+  +   G++   +   +N +I
Sbjct: 545 SGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATAD--TFNILI 602

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
           G   +  ++    + F +M+  G  PD  TY ++ + L K   V        EMI   + 
Sbjct: 603 GAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRILVDGLCKAANVDRAYAHLAEMISKGFV 662

Query: 394 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
           P+       + +L        A+ I + ++  G++P
Sbjct: 663 PSMATFGRMLNLLAMNHRVSEAVAIIHIMVRMGVVP 698


>gi|18415314|ref|NP_567587.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|334186696|ref|NP_001190771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|15810161|gb|AAL07224.1| unknown protein [Arabidopsis thaliana]
 gi|332658782|gb|AEE84182.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658783|gb|AEE84183.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 95/454 (20%), Positives = 184/454 (40%), Gaps = 44/454 (9%)

Query: 67  DIESALACTGIIPTPDLVHEVLQ--LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLG 124
           D+   LA  G+ P+    + +L   +  +      + F    +G     Y +   ++   
Sbjct: 212 DVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCKGVSPDVYLFTTAINAFC 271

Query: 125 KNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV 183
           K G+ E+       M+E GV  ++ TF ++ D     G+YDEA M  + M   G+E  ++
Sbjct: 272 KGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLI 331

Query: 184 AVNSLLSAICR----------------------------------QENQTSRALEFLN-R 208
             + L+  + R                                  +    ++A+E  +  
Sbjct: 332 TYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLM 391

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE-RFEWNPEHVLAYETFLITLIRG 267
           V K +     ++  L++G+ K G  + A +   EM+   F  N     ++ + +  L   
Sbjct: 392 VSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQG---SFTSVICLLCSH 448

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
              D AL+F+  M   N  P     +  +  L K    + A++LW   +  GF  + +  
Sbjct: 449 LMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGF--VVDTR 506

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
             NA++  LC    +D  FR   +++  G   D ++YN +       K++ E   F  EM
Sbjct: 507 TSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEM 566

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
           +K   +P     +  I  L + ++ E AI+ W+    NG+LP   + + ++ G     R 
Sbjct: 567 VKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERT 626

Query: 448 SDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
            + + F +EM+++ +    V  + L +A+    R
Sbjct: 627 EEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGR 660



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 92/394 (23%), Positives = 161/394 (40%), Gaps = 42/394 (10%)

Query: 82  DLVHEVL--QLSYDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRV 138
           DL+ EV   Q   D    A+D F   A +G   S    N+++  L +   F++   A  V
Sbjct: 192 DLLIEVYCTQFKRDGCYLALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDV 251

Query: 139 MKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198
           + +     +  F +  +++C  GK +EAV  F  M   GV  +VV  N+           
Sbjct: 252 VCKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNT----------- 300

Query: 199 TSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYE 258
                                   +++G    G  +EA     +MVER    P  ++ Y 
Sbjct: 301 ------------------------VIDGLGMCGRYDEAFMFKEKMVER-GMEPT-LITYS 334

Query: 259 TFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI 318
             +  L R K++ +A   L+ M  +   P +  ++N +D  ++      A+++ D+MV  
Sbjct: 335 ILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSK 394

Query: 319 GFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVH 378
           G +L  +   YN +I   C N   DN  R   +M+  G   +  ++  +   L  +    
Sbjct: 395 GLSLTSS--TYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFD 452

Query: 379 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 438
              +F  EM+     P      T I+ L    +   A+E+W   L  G +    ++N LL
Sbjct: 453 SALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALL 512

Query: 439 VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
            GL   G+L +  R  +E+L R  ++  V+ + L
Sbjct: 513 HGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTL 546



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 153/361 (42%), Gaps = 58/361 (16%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP------TFASIFDSYCGA 160
           +G  L+   +N ++    KNG   Q  NA R++KE  +LS+       +F S+    C  
Sbjct: 394 KGLSLTSSTYNTLIKGYCKNG---QADNAERLLKE--MLSIGFNVNQGSFTSVICLLCSH 448

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE----FLNRVKKIVDPD 216
             +D A+     M +  +      + +L+S +C+   + S+ALE    FLN+   +VD  
Sbjct: 449 LMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKH-GKHSKALELWFQFLNK-GFVVDTR 506

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
             +   LL G  + G ++EA +   E++ R        ++Y T +      K++DEA  F
Sbjct: 507 TSN--ALLHGLCEAGKLDEAFRIQKEILGR--GCVMDRVSYNTLISGCCGKKKLDEAFMF 562

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLL 336
           L                                   D MV  G  L P+   Y+ +I  L
Sbjct: 563 L-----------------------------------DEMVKRG--LKPDNYTYSILICGL 585

Query: 337 CNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 396
            N + V+   +F+D    +G  PD  TY+++ +   K +R  E ++FF EM+    QP  
Sbjct: 586 FNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNT 645

Query: 397 LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 456
           +     I     +    +A+E+   +   GI P  A+   L+ G+  + R+ + +   EE
Sbjct: 646 VVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEE 705

Query: 457 M 457
           M
Sbjct: 706 M 706



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 110/281 (39%), Gaps = 48/281 (17%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFE---QMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGK 162
           RG +   Y +++++  L    + E   Q W+     K +G+L  + T++ + D  C A +
Sbjct: 569 RGLKPDNYTYSILICGLFNMNKVEEAIQFWDDC---KRNGMLPDVYTYSVMIDGCCKAER 625

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFA 221
            +E    FD M    V+ + V  N L+ A CR   + S ALE    +K K + P+  ++ 
Sbjct: 626 TEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRS-GRLSMALELREDMKHKGISPNSATYT 684

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L++G      VEEA   F EM  R E    +V  Y   +    +  Q+ +    LR M 
Sbjct: 685 SLIKGMSIISRVEEAKLLFEEM--RMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMH 742

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
            +N                                     + PN I Y  +IG    + +
Sbjct: 743 SKN-------------------------------------VHPNKITYTVMIGGYARDGN 765

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
           V    R  ++M   G  PDS+TY       +K   V E  K
Sbjct: 766 VTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEAFK 806



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/204 (19%), Positives = 83/204 (40%), Gaps = 3/204 (1%)

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAV 332
           AL    V+  +  FP+    +  L  LV+ N+     + +D++      + P++ ++   
Sbjct: 210 ALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCK---GVSPDVYLFTTA 266

Query: 333 IGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 392
           I   C    V+   + F +M   G  P+ +T+N + + L    R  E   F  +M++   
Sbjct: 267 INAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGM 326

Query: 393 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 452
           +PT +  +  +  L  A     A  +   + + G  P     N L+      G L+    
Sbjct: 327 EPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIE 386

Query: 453 FAEEMLNRRILIYEVTMHKLKKAF 476
             + M+++ + +   T + L K +
Sbjct: 387 IKDLMVSKGLSLTSSTYNTLIKGY 410


>gi|363543233|ref|NP_001241831.1| uncharacterized protein LOC100857030 [Zea mays]
 gi|224033903|gb|ACN36027.1| unknown [Zea mays]
          Length = 655

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 90/391 (23%), Positives = 160/391 (40%), Gaps = 40/391 (10%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++  L +NG FE++   +  M E G    +  +A+I D  C  G  + A    + M 
Sbjct: 265 FNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMP 324

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
            +G++ +VV  N+LL  +C  E              K    D  +F IL++ + + G V+
Sbjct: 325 SYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVD 384

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
              +   +M+ER    P+ V+ Y T +    +   +DEA+  L+ M    C P    ++ 
Sbjct: 385 RVIELLEQMLER-GCMPD-VITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTI 442

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
            L  L        A  L   M+  G  L P  I +N +I  LC    V+       QM+ 
Sbjct: 443 VLKGLCSAERWVDAEDLMSQMIQQGCPLNP--ITFNTLINFLCKKGLVEQAIELLKQMLV 500

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL---NCATA--------- 402
           +G  PD ++Y+ + + L K  +  E  +  + M+     P  +   + A+A         
Sbjct: 501 NGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINK 560

Query: 403 -----------------------ITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 439
                                  I+ L    E E AIE   Y++ +G +P E++   L+ 
Sbjct: 561 VIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIR 620

Query: 440 GLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 470
           GL + G + + +    E+ ++  L   +  H
Sbjct: 621 GLASEGFVKEAQEMLTELCSKGALRKHLMKH 651



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 94/423 (22%), Positives = 178/423 (42%), Gaps = 12/423 (2%)

Query: 76  GIIPTPDLVHEVLQLSYDSPS--SAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQM 132
           G  P P + H +L+ +       SAV        RG  L     NL+++ +   G  ++ 
Sbjct: 152 GCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDEA 211

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
            + +R +   G    + ++ ++    C A ++       + M       ++V  N+L+S 
Sbjct: 212 LHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISY 271

Query: 192 ICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
           +CR      R  E L + V+    PD   +A +++G  KEG++E A++    M   +   
Sbjct: 272 LCRN-GLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRM-PSYGLK 329

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P +V+ Y T L  L   ++ +E  + L  M  ++C      F+  +D   +       ++
Sbjct: 330 P-NVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIE 388

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
           L + M+  G   MP++I Y  VI   C    +D        M   G  P++++Y ++ + 
Sbjct: 389 LLEQMLERG--CMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKG 446

Query: 371 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 430
           L   +R  + E    +MI+      P+   T I  L      E AIE+   +L NG  P 
Sbjct: 447 LCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPD 506

Query: 431 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFD 488
             S + ++ GL   G+  +       M+N+ +    +    +  A   E R   +  +FD
Sbjct: 507 LISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFD 566

Query: 489 SLE 491
           +++
Sbjct: 567 NIQ 569


>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Vitis vinifera]
          Length = 728

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 88/348 (25%), Positives = 147/348 (42%), Gaps = 43/348 (12%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN- 207
           T++ +    C  G++ EA    + M+ HG+  DVV    L+  +C+ + + + A++ LN 
Sbjct: 286 TYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCK-DGRATHAMDLLNL 344

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            V+K  +P   ++ +LL G  KEG V +A K    M+E+       V+ Y T +  L   
Sbjct: 345 MVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEK--GKKADVVTYNTLMKGLCDK 402

Query: 268 KQVDEALKFLRVM-KGENCF-PTLKFFSNALDILVKLNDSTHAV---------------- 309
            +VDEALK    M   ENC  P +  F+  +  L K    T AV                
Sbjct: 403 GKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLV 462

Query: 310 -------------------QLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
                              +LW  ++ +GF  +PN   Y+ +I   C    ++     F 
Sbjct: 463 TYNMLLGGCLKAGKIKEAMELWKQVLDLGF--VPNSFTYSILIDGFCKMRMLNIAKGLFC 520

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
           +M  HG  P    YN +   L K   + + +  F EM     +P  ++  T I   L A 
Sbjct: 521 EMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAG 580

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
           + +   E+   ++E G+ P   + + L+  L  LG L + +   E M+
Sbjct: 581 DFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMV 628



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 148/343 (43%), Gaps = 5/343 (1%)

Query: 119 MVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           ++D L K+GR ++    +  MK+ G    +  + ++   +C  G  D     FD M   G
Sbjct: 220 LMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKG 279

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVEEA 236
           +  +VV  + L+  +CR   Q   A   LN + +  + PD  ++  L++G  K+G    A
Sbjct: 280 ISANVVTYSCLVHGLCRL-GQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHA 338

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
                 MVE+ E  P +V  Y   L  L +   V +A K LR+M  +     +  ++  +
Sbjct: 339 MDLLNLMVEKGE-EPSNV-TYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLM 396

Query: 297 DILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG 356
             L        A++L++ M      L PN+  +N +IG LC    +    +   +MV  G
Sbjct: 397 KGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKG 456

Query: 357 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 416
           +  + +TYNM+    +K  ++ E  + + +++   + P     +  I          IA 
Sbjct: 457 SCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAK 516

Query: 417 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
            ++  +  +G+ P     N L+  L   G L   +   +EM N
Sbjct: 517 GLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGN 559



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 91/388 (23%), Positives = 169/388 (43%), Gaps = 18/388 (4%)

Query: 98  AVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           A+   R  GR + +SP   ++N +++ L K  + ++    +  M+  G   +  T  ++ 
Sbjct: 163 AMGLIREMGR-KSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLM 221

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD 214
           D  C  G+ DEA+   + M   G + DVV   +L+S  C   N       F   + K + 
Sbjct: 222 DGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGIS 281

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
            +  +++ L+ G  + G  +EAN     M E    +P+ V+ Y   +  L +  +   A+
Sbjct: 282 ANVVTYSCLVHGLCRLGQWKEANTVLNAMAEH-GIHPD-VVTYTGLIDGLCKDGRATHAM 339

Query: 275 KFLRVM--KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAV 332
             L +M  KGE   P+   ++  L  L K      A ++  +M+  G     +++ YN +
Sbjct: 340 DLLNLMVEKGEE--PSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKK--ADVVTYNTL 395

Query: 333 IGLLCNNDDVDNVFRFFDQMVFHGAF--PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 390
           +  LC+   VD   + F+ M  +     P+  T+NM+   L K  R+ +  K   +M+K 
Sbjct: 396 MKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKK 455

Query: 391 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 450
                 +     +   L A + + A+E+W  +L+ G +P   + + L+ G   +  L+  
Sbjct: 456 GSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIA 515

Query: 451 RRFAEEM----LNRRILIYEVTMHKLKK 474
           +    EM    LN  +  Y   M  L K
Sbjct: 516 KGLFCEMRTHGLNPALFDYNTLMASLCK 543



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 137/344 (39%), Gaps = 41/344 (11%)

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR------------------ 194
           +    C  G   EA+     M    V  D+V+ N+L++ +C+                  
Sbjct: 150 VLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAG 209

Query: 195 ----------------QENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEAN 237
                           ++ +   A+E L  +KK   D D   +  L+ G+   GN++   
Sbjct: 210 CFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGK 269

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297
           + F EM+ +      +V+ Y   +  L R  Q  EA   L  M      P +  ++  +D
Sbjct: 270 ELFDEMLGK--GISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLID 327

Query: 298 ILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGA 357
            L K   +THA+ L ++MV  G    P+ + YN ++  LC    V + F+    M+  G 
Sbjct: 328 GLCKDGRATHAMDLLNLMVEKGEE--PSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGK 385

Query: 358 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE--WQPTPLNCATAITMLLDADEPEIA 415
             D +TYN + + L    +V E  K F+ M  NE   +P        I  L        A
Sbjct: 386 KADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKA 445

Query: 416 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
           ++I   +++ G      + N LL G    G++ +     +++L+
Sbjct: 446 VKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLD 489



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 118/260 (45%), Gaps = 4/260 (1%)

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           I+L+G  + G V EA     EM  R   +P+ +++Y T +  L + K++ EA+  L  M+
Sbjct: 149 IVLKGLCRNGGVFEAMGLIREM-GRKSVSPD-IVSYNTLINGLCKAKKLKEAVGLLLEME 206

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
              CFP     +  +D L K      A++L + M   GF+   ++++Y  +I   CNN +
Sbjct: 207 AAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFD--ADVVLYGTLISGFCNNGN 264

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
           +D     FD+M+  G   + +TY+ +   L +  +  E     + M ++   P  +    
Sbjct: 265 LDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTG 324

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461
            I  L        A+++ N ++E G  P   + N LL GL   G + D  +    M+ + 
Sbjct: 325 LIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKG 384

Query: 462 ILIYEVTMHKLKKAFYNESR 481
                VT + L K   ++ +
Sbjct: 385 KKADVVTYNTLMKGLCDKGK 404



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 76/384 (19%), Positives = 151/384 (39%), Gaps = 80/384 (20%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDE 165
           +G+  S   +N+++  L K G     +  +R+M E G  + + T+ ++    C  GK DE
Sbjct: 348 KGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDE 407

Query: 166 AVMSFDVM--SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-------------- 209
           A+  F+ M  + + +E +V   N L+  +C+ E + ++A++   ++              
Sbjct: 408 ALKLFNSMFDNENCLEPNVFTFNMLIGGLCK-EGRLTKAVKIHRKMVKKGSCGNLVTYNM 466

Query: 210 ------------------KKIVD----PDGDSFAILLEGWEKEGNVEEANKTFGEMVERF 247
                             K+++D    P+  +++IL++G+ K   +  A   F EM    
Sbjct: 467 LLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEM-RTH 525

Query: 248 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP-----------TLK------ 290
             NP  +  Y T + +L +   +++A    + M   NC P           TLK      
Sbjct: 526 GLNPA-LFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQF 584

Query: 291 ------------------FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAV 332
                              FS  ++ L KL +   A    + MV  GF   P+ ++Y+++
Sbjct: 585 VKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFT--PDALVYDSL 642

Query: 333 IGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 392
           +  L +  D   +     QM   G   D    + I  CL  + +  +V +      +   
Sbjct: 643 LKGLSSKGDTTEIINLLHQMAAKGTVLDRKIVSTILTCLCHSIQEVDVMELLPTFFQGTS 702

Query: 393 QPTPLNCATAITMLLDADEPEIAI 416
           +   ++C   + M L    P++ +
Sbjct: 703 EGASISC-NELLMQLHQSHPKLQL 725



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 92/248 (37%), Gaps = 11/248 (4%)

Query: 234 EEANKTFGEMVERF----EWNPEHVLAYETFLI-TLIRGKQVDEALKFLRVMKGENCFPT 288
           ++ N  F E V  F    ++N     A   FL+  L R +    A    R M   +  P+
Sbjct: 49  QKPNSQFTEAVSLFHSALDFNLLPSWATCNFLVDALARSRNYGLAFSVYRRMTHVDVLPS 108

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
               S  ++             +  +++  GF +  N+ + N V+  LC N  V      
Sbjct: 109 FGSLSALIECFADAQKPQLGFGVVGLVLKRGFTV--NVFIMNIVLKGLCRNGGVFEAMGL 166

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
             +M      PD ++YN +   L K K++ E      EM      P  + C T +  L  
Sbjct: 167 IREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCK 226

Query: 409 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI----LI 464
               + A+E+   + + G          L+ G  N G L   +   +EML + I    + 
Sbjct: 227 DGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVT 286

Query: 465 YEVTMHKL 472
           Y   +H L
Sbjct: 287 YSCLVHGL 294


>gi|15232008|ref|NP_187518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207466|sp|Q9SS81.1|PP221_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g09060
 gi|5923671|gb|AAD56322.1|AC009326_9 hypothetical protein [Arabidopsis thaliana]
 gi|332641194|gb|AEE74715.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 687

 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/376 (24%), Positives = 165/376 (43%), Gaps = 20/376 (5%)

Query: 117 NLMVDVLGKNGRFE---QMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           N+M+  L K GR +   ++W   R+ + +    L T++S+    C AG  D+A   F+ +
Sbjct: 259 NIMISGLSKCGRVDDCLKIWE--RMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNEL 316

Query: 174 SMHGVEQDVVAVNSLLSAICR-----QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
                  DVV  N++L   CR     +  +  R +E  N V  +      S+ IL++G  
Sbjct: 317 DERKASIDVVTYNTMLGGFCRCGKIKESLELWRIMEHKNSVNIV------SYNILIKGLL 370

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           + G ++EA   +  M  +          Y  F+  L     V++AL  ++ ++       
Sbjct: 371 ENGKIDEATMIWRLMPAK--GYAADKTTYGIFIHGLCVNGYVNKALGVMQEVESSGGHLD 428

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
           +  +++ +D L K      A  L   M   G  L  N  + NA+IG L  +  +     F
Sbjct: 429 VYAYASIIDCLCKKKRLEEASNLVKEMSKHGVEL--NSHVCNALIGGLIRDSRLGEASFF 486

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
             +M  +G  P  ++YN++   L K  +  E   F  EM++N W+P     +  +  L  
Sbjct: 487 LREMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCR 546

Query: 409 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 468
             + ++A+E+W+  L++G+       N L+ GL ++G+L D       M +R      VT
Sbjct: 547 DRKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVT 606

Query: 469 MHKLKKAFYNESRSMR 484
            + L + F+    S R
Sbjct: 607 YNTLMEGFFKVGDSNR 622



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 97/400 (24%), Positives = 163/400 (40%), Gaps = 54/400 (13%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           +F  AG    L  Y  N+++ +  K   FE+    +  M ++G    + +++++ +    
Sbjct: 139 YFETAGVAPNLQTY--NVLIKMSCKKKEFEKARGFLDWMWKEGFKPDVFSYSTVINDLAK 196

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV--KKIVDPDG 217
           AGK D+A+  FD MS  GV  DV   N L+    ++++  + A+E  +R+     V P+ 
Sbjct: 197 AGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKT-AMELWDRLLEDSSVYPNV 255

Query: 218 DSFAILLEG-------------WEK----------------------EGNVEEANKTFGE 242
            +  I++ G             WE+                       GNV++A   F E
Sbjct: 256 KTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNE 315

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK- 301
           + ER       V+ Y T L    R  ++ E+L+  R+M+ +N    + +     +IL+K 
Sbjct: 316 LDERKA--SIDVVTYNTMLGGFCRCGKIKESLELWRIMEHKNSVNIVSY-----NILIKG 368

Query: 302 -LNDST--HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAF 358
            L +     A  +W +M   G+    +   Y   I  LC N  V+       ++   G  
Sbjct: 369 LLENGKIDEATMIWRLMPAKGY--AADKTTYGIFIHGLCVNGYVNKALGVMQEVESSGGH 426

Query: 359 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 418
            D   Y  I +CL K KR+ E      EM K+  +     C   I  L+       A   
Sbjct: 427 LDVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEASFF 486

Query: 419 WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
              + +NG  P   S N L+ GL   G+  +   F +EML
Sbjct: 487 LREMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEML 526



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 128/307 (41%), Gaps = 48/307 (15%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE----DGVLSLPTFASIFDSYCGAG 161
            +G       + + +  L  NG   +   A+ VM+E     G L +  +ASI D  C   
Sbjct: 387 AKGYAADKTTYGIFIHGLCVNGYVNK---ALGVMQEVESSGGHLDVYAYASIIDCLCKKK 443

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSF 220
           + +EA      MS HGVE +    N+L+  + R +++   A  FL  + K    P   S+
Sbjct: 444 RLEEASNLVKEMSKHGVELNSHVCNALIGGLIR-DSRLGEASFFLREMGKNGCRPTVVSY 502

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL----KF 276
            IL+ G  K G   EA+    EM+E   W P+ +  Y   L  L R +++D AL    +F
Sbjct: 503 NILICGLCKAGKFGEASAFVKEMLEN-GWKPD-LKTYSILLCGLCRDRKIDLALELWHQF 560

Query: 277 LRV-------------------------------MKGENCFPTLKFFSNALDILVKLNDS 305
           L+                                M+  NC   L  ++  ++   K+ DS
Sbjct: 561 LQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGFFKVGDS 620

Query: 306 THAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYN 365
             A  +W  M  +G  L P++I YN ++  LC    V     FFD    HG FP   T+N
Sbjct: 621 NRATVIWGYMYKMG--LQPDIISYNTIMKGLCMCRGVSYAMEFFDDARNHGIFPTVYTWN 678

Query: 366 MIFECLI 372
           ++   ++
Sbjct: 679 ILVRAVV 685



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 96/229 (41%), Gaps = 10/229 (4%)

Query: 271 DEALK-FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY 329
           D+AL  F R+ +   C P ++ ++  L+  V+         L+      G  + PNL  Y
Sbjct: 95  DQALDVFKRMREIFGCEPAIRSYNTLLNAFVEAKQWVKVESLFAYFETAG--VAPNLQTY 152

Query: 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389
           N +I + C   + +    F D M   G  PD  +Y+ +   L K  ++ +  + F EM +
Sbjct: 153 NVLIKMSCKKKEFEKARGFLDWMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSE 212

Query: 390 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN-GILPLEASANELLVGLRNLGRLS 448
               P        I   L   + + A+E+W+ +LE+  + P   + N ++ GL   GR+ 
Sbjct: 213 RGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVD 272

Query: 449 DVRRFAEEMLN----RRILIYEVTMHKLKKAFYNESRSMRDIFDSLERR 493
           D  +  E M      + +  Y   +H L  A          +F+ L+ R
Sbjct: 273 DCLKIWERMKQNEREKDLYTYSSLIHGLCDA--GNVDKAESVFNELDER 319


>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 988

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 144/313 (46%), Gaps = 6/313 (1%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           ++ TF ++ DS C  G+   AV   DVM M G + + V+ N L++ +   + +  RA E 
Sbjct: 206 TIVTFNTMMDSRCKEGEVGRAVEVLDVMRMFGCDPNDVSYNVLVNGLS-GKGEFDRAKEL 264

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           + ++  + +     ++  L+ G+ K+   EEAN    EM+ R       V+ Y T + +L
Sbjct: 265 IEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGAL--PTVVTYNTIMYSL 322

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
            R  +V +A ++L VM  E+  P L  ++  +    +L +   A+ L+  +     NL+P
Sbjct: 323 CRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSK--NLVP 380

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           +++ YN +I   C   ++D      D M+ HG  PD +T+ ++     +   +   ++ F
Sbjct: 381 SVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNLPMAKELF 440

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
            EM+    +P  +   T I   L    P  A  +   +   G  P   + N L+ GL  L
Sbjct: 441 DEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFPPDLITYNVLINGLCKL 500

Query: 445 GRLSDVRRFAEEM 457
           G   D     ++M
Sbjct: 501 GNFDDANELVQKM 513



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 87/364 (23%), Positives = 158/364 (43%), Gaps = 17/364 (4%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSYCGAGKYD 164
           GRG   +   +N ++  L + GR       + VM  ED +  L ++ ++   Y   G + 
Sbjct: 305 GRGALPTVVTYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFA 364

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
           EA++ F  +    +   VV  N+L+   CR  N         + +K  + PD  +F IL+
Sbjct: 365 EALLLFSELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILV 424

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G+ + GN+  A + F EM+ R    P+  +AY T ++  ++     +A      MK E 
Sbjct: 425 RGFCQMGNLPMAKELFDEMLSR-GLKPD-CIAYTTRIVGELKLGNPSKAFGMKEEMKAEG 482

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI------GLLCN 338
             P L  ++  ++ L KL +   A +L   M   G  ++P+ + Y ++I      GLL  
Sbjct: 483 FPPDLITYNVLINGLCKLGNFDDANELVQKMRLEG--IVPDHVTYTSIIHAHLISGLLRK 540

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
            ++V      F  M+  G  P  +TY ++        R+   +K+F EM      P  + 
Sbjct: 541 AEEV------FSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNVIT 594

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
               I  L   +  ++A  ++  +   G+ P + +   L+    NL    D  +  ++ML
Sbjct: 595 YNALIYGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILINENSNLQYWQDALKLYKDML 654

Query: 459 NRRI 462
           +R I
Sbjct: 655 DREI 658



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 147/339 (43%), Gaps = 13/339 (3%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G ++S + +N ++    K   FE+  +  R M   G L ++ T+ +I  S C  G+  +A
Sbjct: 272 GLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALPTVVTYNTIMYSLCRLGRVSDA 331

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
               DVM    +  D+V+ N+L+    R  N     L F     K + P   ++  L++G
Sbjct: 332 RRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNTLIDG 391

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG----KQVDEALKFLRVMKG 282
             + GN++ A     +M+ +    P+ V    TF I L+RG      +  A +    M  
Sbjct: 392 GCRTGNLDIAKGMKDDMI-KHGLCPDVV----TFTI-LVRGFCQMGNLPMAKELFDEMLS 445

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
               P    ++  +   +KL + + A  + + M   GF   P+LI YN +I  LC   + 
Sbjct: 446 RGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFP--PDLITYNVLINGLCKLGNF 503

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
           D+      +M   G  PD +TY  I    + +  + + E+ F +M+K    P+ +     
Sbjct: 504 DDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVL 563

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 441
           I         + A + ++ + + G+ P   + N L+ GL
Sbjct: 564 IHSYAVRGRLDFAKKYFDEMQDKGVSPNVITYNALIYGL 602



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 85/375 (22%), Positives = 157/375 (41%), Gaps = 16/375 (4%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++N++V+ L   G F++    +  M   G+ +S  T+  +   +C    ++EA      M
Sbjct: 244 SYNVLVNGLSGKGEFDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREM 303

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEKEGN 232
              G    VV  N+++ ++CR   + S A  +L+  V + + PD  S+  L+ G+ + GN
Sbjct: 304 LGRGALPTVVTYNTIMYSLCRL-GRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGN 362

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
             EA   F E+  R +     V+ Y T +    R   +D A      M      P +  F
Sbjct: 363 FAEALLLFSEL--RSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTF 420

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  +    ++ +   A +L+D M+  G  L P+ I Y   I       +    F   ++M
Sbjct: 421 TILVRGFCQMGNLPMAKELFDEMLSRG--LKPDCIAYTTRIVGELKLGNPSKAFGMKEEM 478

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
              G  PD +TYN++   L K     +  +   +M      P  +   + I   L +   
Sbjct: 479 KAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLL 538

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI---------L 463
             A E+++ +L+ GI P   +   L+      GRL   +++ +EM ++ +         L
Sbjct: 539 RKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNVITYNAL 598

Query: 464 IYEVTMHKLKKAFYN 478
           IY +    +    YN
Sbjct: 599 IYGLCKENMMDVAYN 613



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 87/213 (40%), Gaps = 3/213 (1%)

Query: 261 LITLIRGKQ-VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG 319
           ++ L++ K  V+E  +   VM      PT+  F+  +D   K  +   AV++ D+M   G
Sbjct: 178 VLKLLKDKSMVNEVEEVYSVMIKCQIRPTIVTFNTMMDSRCKEGEVGRAVEVLDVMRMFG 237

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
            +  PN + YN ++  L    + D      +QM   G    + TYN +     K +   E
Sbjct: 238 CD--PNDVSYNVLVNGLSGKGEFDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEE 295

Query: 380 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 439
                 EM+     PT +   T +  L        A    + ++   ++P   S N L+ 
Sbjct: 296 ANDLRREMLGRGALPTVVTYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIY 355

Query: 440 GLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
           G   LG  ++      E+ ++ ++   VT + L
Sbjct: 356 GYSRLGNFAEALLLFSELRSKNLVPSVVTYNTL 388



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 81/184 (44%), Gaps = 13/184 (7%)

Query: 311 LWDIMVGIGF--NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIF 368
           + D++VGIG   N   ++ + + +I +      ++     F +MV +G  PD    N + 
Sbjct: 120 VLDVLVGIGCGRNSEVSVKLLDLLIQVFAKKLILEKCLMVFYKMVNNGLLPDVRNCNRVL 179

Query: 369 ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 428
           + L     V+EVE+ +  MIK + +PT +   T +       E   A+E+ + +   G  
Sbjct: 180 KLLKDKSMVNEVEEVYSVMIKCQIRPTIVTFNTMMDSRCKEGEVGRAVEVLDVMRMFGCD 239

Query: 429 PLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL--------KKAFYNES 480
           P + S N L+ GL   G     +   E+M    +L  +V+ H          KK  + E+
Sbjct: 240 PNDVSYNVLVNGLSGKGEFDRAKELIEQM---SMLGLKVSAHTYNPLIRGFCKKEMFEEA 296

Query: 481 RSMR 484
             +R
Sbjct: 297 NDLR 300


>gi|449500717|ref|XP_004161177.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g02060, chloroplastic-like [Cucumis sativus]
          Length = 720

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 93/382 (24%), Positives = 170/382 (44%), Gaps = 22/382 (5%)

Query: 96  SSAVDFFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM--KEDGVLSLPT--F 150
           S A+ FF WA   G   +  ++  M+++LG+N       N +  +  +  G++ L    F
Sbjct: 93  SKALQFFNWAQEMGYTHTEQSYFSMLEILGRNRHLNTARNFLFSIEKRSRGIVKLEARFF 152

Query: 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK 210
            S+  ++  AG + E++  F +M  HGV   VV  NSLL+ + ++  +T+ A +  + + 
Sbjct: 153 NSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKR-GRTNMAKKVYDEML 211

Query: 211 KI--VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
               V PD  +F IL+ G+   G V++  + F ++  RF   P+ V+ Y T +  L R  
Sbjct: 212 STYGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDL-SRFGCEPD-VVTYNTLVDGLCRAG 269

Query: 269 QVDEALKFLRVM--KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNL 326
           +V  A   ++ M  K  +  P +  ++  +       +   A+ +++ MV  G  L  N 
Sbjct: 270 KVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEEMVNQG--LKANN 327

Query: 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAF-PDSLTYNMIFECLIKNKRVHEVEKFFH 385
           I YN +I  LC     + +    +     G F PD+ T+N +  C      + +  K F 
Sbjct: 328 ITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHAGNLDDALKVFE 387

Query: 386 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL-------PLEASANELL 438
            M + + QP     +  +  L      E A ++ + +LE  IL       PL A+ N + 
Sbjct: 388 RMSELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERKILLSGDGCKPLVAAYNPIF 447

Query: 439 VGLRNLGRLSDVRRFAEEMLNR 460
             L   G+     +   +++ R
Sbjct: 448 KYLCETGKTKKAEKAFRQLMRR 469



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 74/409 (18%), Positives = 164/409 (40%), Gaps = 62/409 (15%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS--LPTFASIFDSYC 158
           F     +G + +   +N ++  L +  +FE++ + +     DG  S    TF ++   +C
Sbjct: 315 FEEMVNQGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHC 374

Query: 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV--KKIVDPD 216
            AG  D+A+  F+ MS   ++ D    ++L+ ++C Q     +A + L+++  +KI+   
Sbjct: 375 HAGNLDDALKVFERMSELKIQPDSATYSALVRSLC-QGGHYEKAEDLLDKLLERKIL-LS 432

Query: 217 GDSFAILLEGWE-------KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
           GD    L+  +        + G  ++A K F +++ R   +P    +Y+T ++   +   
Sbjct: 433 GDGCKPLVAAYNPIFKYLCETGKTKKAEKAFRQLMRRGTQDPP---SYKTLIMGHCKEGT 489

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD---------------- 313
            +   + L +M  ++  P  + + + ++ L+ ++    A+Q  +                
Sbjct: 490 FESGYELLVLMLRKDFXPDFETYESLINGLLHMDKPLLALQSLEKMLRSSHRPNSSTFHS 549

Query: 314 -----------------IMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG 356
                            I + +  N+  NL      + LL      D  F+    +   G
Sbjct: 550 ILAKLLEQGRASESASLIQLMLDKNIRQNLSFSTGCVRLLFGAGMNDKAFQLVHLLYGKG 609

Query: 357 AFPDSLTYNMIFECLIK-----NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
                  Y++  E LI+      K +   +     +  +++    L C T I  L + ++
Sbjct: 610 -------YSVKMEELIRYLCHCRKVIQGSKLLLFSLESHQFVDMDL-CNTVIFQLCEINK 661

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
              A  ++  ++E G+    +  N+L V L+  G+L +     + M  R
Sbjct: 662 LSEAFSLYYKLVEMGVHQQLSCQNQLKVSLKAGGKLEEAESVQKRMERR 710


>gi|449449910|ref|XP_004142707.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Cucumis sativus]
          Length = 757

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 93/382 (24%), Positives = 170/382 (44%), Gaps = 22/382 (5%)

Query: 96  SSAVDFFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM--KEDGVLSLPT--F 150
           S A+ FF WA   G   +  ++  M+++LG+N       N +  +  +  G++ L    F
Sbjct: 93  SKALQFFNWAQEMGYTHTEQSYFSMLEILGRNRHLNTARNFLFSIEKRSRGIVKLEARFF 152

Query: 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK 210
            S+  ++  AG + E++  F +M  HGV   VV  NSLL+ + ++  +T+ A +  + + 
Sbjct: 153 NSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKR-GRTNMAKKVYDEML 211

Query: 211 KI--VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
               V PD  +F IL+ G+   G V++  + F ++  RF   P+ V+ Y T +  L R  
Sbjct: 212 STYGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDL-SRFGCEPD-VVTYNTLVDGLCRAG 269

Query: 269 QVDEALKFLRVM--KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNL 326
           +V  A   ++ M  K  +  P +  ++  +       +   A+ +++ MV  G  L  N 
Sbjct: 270 KVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEEMVNQG--LKANN 327

Query: 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAF-PDSLTYNMIFECLIKNKRVHEVEKFFH 385
           I YN +I  LC     + +    +     G F PD+ T+N +  C      + +  K F 
Sbjct: 328 ITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHAGNLDDALKVFE 387

Query: 386 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL-------PLEASANELL 438
            M + + QP     +  +  L      E A ++ + +LE  IL       PL A+ N + 
Sbjct: 388 RMSELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERKILLSGDGCKPLVAAYNPIF 447

Query: 439 VGLRNLGRLSDVRRFAEEMLNR 460
             L   G+     +   +++ R
Sbjct: 448 KYLCETGKTKKAEKAFRQLMRR 469



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 75/420 (17%), Positives = 170/420 (40%), Gaps = 67/420 (15%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS--LPTFASIFDSYC 158
           F     +G + +   +N ++  L +  +FE++ + +     DG  S    TF ++   +C
Sbjct: 315 FEEMVNQGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHC 374

Query: 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV--KKIVDPD 216
            AG  D+A+  F+ MS   ++ D    ++L+ ++C Q     +A + L+++  +KI+   
Sbjct: 375 HAGNLDDALKVFERMSELKIQPDSATYSALVRSLC-QGGHYEKAEDLLDKLLERKIL-LS 432

Query: 217 GDSFAILLEGWE-------KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
           GD    L+  +        + G  ++A K F +++ R   +P    +Y+T ++   +   
Sbjct: 433 GDGCKPLVAAYNPIFKYLCETGKTKKAEKAFRQLMRRGTQDPP---SYKTLIMGHCKEGT 489

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD---------------- 313
            +   + L +M  ++  P  + + + ++ L+ ++    A+Q  +                
Sbjct: 490 FESGYELLVLMLRKDFLPDFETYESLINGLLHMDKPLLALQSLEKMLRSSHRPNSSTFHS 549

Query: 314 -----------------IMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG 356
                            I + +  N+  NL      + LL      D  F+    +   G
Sbjct: 550 ILAKLLEQGRTSESASLIQLMLDKNIRQNLSFSTGCVRLLFGAGMNDKAFQLVHLLYGKG 609

Query: 357 AFPDSLTYNMIFECLIK-----NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
                  Y++  E LI+      K +   +     +  +++    L C T I  L + ++
Sbjct: 610 -------YSVKMEELIRYLCHCRKVIQGSKLLLFSLESHQFVDMDL-CNTVIFQLCEINK 661

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK 471
              A  ++  ++E G+    +  N+L V L    +L +      E +++R+   E+ +H+
Sbjct: 662 LSEAFSLYYKLVEMGVHQQLSCQNQLKVSLEAGEKLEEA-----EFVSKRMEPVEMGVHQ 716


>gi|223635621|sp|Q940A6.2|PP325_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g19440, chloroplastic; Flags: Precursor
          Length = 838

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 95/454 (20%), Positives = 184/454 (40%), Gaps = 44/454 (9%)

Query: 67  DIESALACTGIIPTPDLVHEVLQ--LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLG 124
           D+   LA  G+ P+    + +L   +  +      + F    +G     Y +   ++   
Sbjct: 225 DVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCKGVSPDVYLFTTAINAFC 284

Query: 125 KNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV 183
           K G+ E+       M+E GV  ++ TF ++ D     G+YDEA M  + M   G+E  ++
Sbjct: 285 KGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLI 344

Query: 184 AVNSLLSAICR----------------------------------QENQTSRALEFLN-R 208
             + L+  + R                                  +    ++A+E  +  
Sbjct: 345 TYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLM 404

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE-RFEWNPEHVLAYETFLITLIRG 267
           V K +     ++  L++G+ K G  + A +   EM+   F  N     ++ + +  L   
Sbjct: 405 VSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQG---SFTSVICLLCSH 461

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
              D AL+F+  M   N  P     +  +  L K    + A++LW   +  GF  + +  
Sbjct: 462 LMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGF--VVDTR 519

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
             NA++  LC    +D  FR   +++  G   D ++YN +       K++ E   F  EM
Sbjct: 520 TSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEM 579

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
           +K   +P     +  I  L + ++ E AI+ W+    NG+LP   + + ++ G     R 
Sbjct: 580 VKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERT 639

Query: 448 SDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
            + + F +EM+++ +    V  + L +A+    R
Sbjct: 640 EEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGR 673



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 92/394 (23%), Positives = 161/394 (40%), Gaps = 42/394 (10%)

Query: 82  DLVHEVL--QLSYDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRV 138
           DL+ EV   Q   D    A+D F   A +G   S    N+++  L +   F++   A  V
Sbjct: 205 DLLIEVYCTQFKRDGCYLALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDV 264

Query: 139 MKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198
           + +     +  F +  +++C  GK +EAV  F  M   GV  +VV  N+           
Sbjct: 265 VCKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNT----------- 313

Query: 199 TSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYE 258
                                   +++G    G  +EA     +MVER    P  ++ Y 
Sbjct: 314 ------------------------VIDGLGMCGRYDEAFMFKEKMVER-GMEPT-LITYS 347

Query: 259 TFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI 318
             +  L R K++ +A   L+ M  +   P +  ++N +D  ++      A+++ D+MV  
Sbjct: 348 ILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSK 407

Query: 319 GFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVH 378
           G +L  +   YN +I   C N   DN  R   +M+  G   +  ++  +   L  +    
Sbjct: 408 GLSLTSS--TYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFD 465

Query: 379 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 438
              +F  EM+     P      T I+ L    +   A+E+W   L  G +    ++N LL
Sbjct: 466 SALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALL 525

Query: 439 VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
            GL   G+L +  R  +E+L R  ++  V+ + L
Sbjct: 526 HGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTL 559



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 153/361 (42%), Gaps = 58/361 (16%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP------TFASIFDSYCGA 160
           +G  L+   +N ++    KNG   Q  NA R++KE  +LS+       +F S+    C  
Sbjct: 407 KGLSLTSSTYNTLIKGYCKNG---QADNAERLLKE--MLSIGFNVNQGSFTSVICLLCSH 461

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE----FLNRVKKIVDPD 216
             +D A+     M +  +      + +L+S +C+   + S+ALE    FLN+   +VD  
Sbjct: 462 LMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKH-GKHSKALELWFQFLNK-GFVVDTR 519

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
             +   LL G  + G ++EA +   E++ R        ++Y T +      K++DEA  F
Sbjct: 520 TSN--ALLHGLCEAGKLDEAFRIQKEILGR--GCVMDRVSYNTLISGCCGKKKLDEAFMF 575

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLL 336
           L                                   D MV  G  L P+   Y+ +I  L
Sbjct: 576 L-----------------------------------DEMVKRG--LKPDNYTYSILICGL 598

Query: 337 CNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 396
            N + V+   +F+D    +G  PD  TY+++ +   K +R  E ++FF EM+    QP  
Sbjct: 599 FNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNT 658

Query: 397 LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 456
           +     I     +    +A+E+   +   GI P  A+   L+ G+  + R+ + +   EE
Sbjct: 659 VVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEE 718

Query: 457 M 457
           M
Sbjct: 719 M 719



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 110/281 (39%), Gaps = 48/281 (17%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFE---QMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGK 162
           RG +   Y +++++  L    + E   Q W+     K +G+L  + T++ + D  C A +
Sbjct: 582 RGLKPDNYTYSILICGLFNMNKVEEAIQFWDDC---KRNGMLPDVYTYSVMIDGCCKAER 638

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFA 221
            +E    FD M    V+ + V  N L+ A CR   + S ALE    +K K + P+  ++ 
Sbjct: 639 TEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRS-GRLSMALELREDMKHKGISPNSATYT 697

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L++G      VEEA   F EM  R E    +V  Y   +    +  Q+ +    LR M 
Sbjct: 698 SLIKGMSIISRVEEAKLLFEEM--RMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMH 755

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
            +N                                     + PN I Y  +IG    + +
Sbjct: 756 SKN-------------------------------------VHPNKITYTVMIGGYARDGN 778

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
           V    R  ++M   G  PDS+TY       +K   V E  K
Sbjct: 779 VTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEAFK 819



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/204 (19%), Positives = 83/204 (40%), Gaps = 3/204 (1%)

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAV 332
           AL    V+  +  FP+    +  L  LV+ N+     + +D++      + P++ ++   
Sbjct: 223 ALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCK---GVSPDVYLFTTA 279

Query: 333 IGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 392
           I   C    V+   + F +M   G  P+ +T+N + + L    R  E   F  +M++   
Sbjct: 280 INAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGM 339

Query: 393 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 452
           +PT +  +  +  L  A     A  +   + + G  P     N L+      G L+    
Sbjct: 340 EPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIE 399

Query: 453 FAEEMLNRRILIYEVTMHKLKKAF 476
             + M+++ + +   T + L K +
Sbjct: 400 IKDLMVSKGLSLTSSTYNTLIKGY 423


>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
 gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
 gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/358 (21%), Positives = 152/358 (42%), Gaps = 4/358 (1%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK 162
           R   +G   S  A+N ++  L K G+ ++       MK+D   +L T+  + D  C AGK
Sbjct: 333 RQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAAPNLSTYNILIDMLCRAGK 392

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
            D A    D M   G+  +V  VN ++  +C+ +        F     K+  PD  +F  
Sbjct: 393 LDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCS 452

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L++G  K G V++A K + +M++       + + Y + +       + ++  K  + M  
Sbjct: 453 LIDGLGKVGRVDDAYKVYEKMLD--SDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMIN 510

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
           +NC P L+  +  +D + K  +      +++ +    F  +P+   Y+ +I  L      
Sbjct: 511 QNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRF--VPDARSYSILIHGLIKAGFA 568

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
           +  +  F  M   G   D+  YN++ +   K  +V++  +   EM    ++PT +   + 
Sbjct: 569 NETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSV 628

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           I  L   D  + A  ++       I       + L+ G   +GR+ +     EE++ +
Sbjct: 629 IDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQK 686



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 103/468 (22%), Positives = 185/468 (39%), Gaps = 51/468 (10%)

Query: 56  ICEILAHAS-SDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL--S 112
           IC +L         E+ L+     P P+ V  VL+   D  + A+++FRW  R   L   
Sbjct: 39  ICNVLETGPWGPSAENTLSALSFKPQPEFVIGVLRRLKDV-NRAIEYFRWYERRTELPHC 97

Query: 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           P ++N ++ V+ +   F+ +   +  M   G    P+  +  +   G  K ++    +DV
Sbjct: 98  PESYNSLLLVMARCRNFDALDQILGEMSVAGFG--PSVNTCIEMVLGCVKANKLREGYDV 155

Query: 173 MSM---HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWE 228
           + M           A  +L+ A     N +   L    +++++  +P    F  L+ G+ 
Sbjct: 156 VQMMRKFKFRPAFSAYTTLIGAF-SAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFA 214

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           KEG V+ A     EM +    + + VL Y   + +  +  +VD A KF   ++     P 
Sbjct: 215 KEGRVDSALSLLDEM-KSSSLDADIVL-YNVCIDSFGKVGKVDMAWKFFHEIEANGLKPD 272

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
              +++ + +L K N    AV++++ +       +P    YN +I    +    D  +  
Sbjct: 273 EVTYTSMIGVLCKANRLDEAVEMFEHLEK--NRRVPCTYAYNTMIMGYGSAGKFDEAYSL 330

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
            ++    G+ P  + YN I  CL K  +V E  K F EM K +  P        I ML  
Sbjct: 331 LERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEM-KKDAAPNLSTYNILIDMLCR 389

Query: 409 ADEPEIAIEIWNYILENGILPLEASAN--------------------------------- 435
           A + + A E+ + + + G+ P   + N                                 
Sbjct: 390 AGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEIT 449

Query: 436 --ELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
              L+ GL  +GR+ D  +  E+ML+       +    L K F+N  R
Sbjct: 450 FCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGR 497



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 82/385 (21%), Positives = 161/385 (41%), Gaps = 38/385 (9%)

Query: 119 MVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           ++D LGK GR +  +    +++  D   +   + S+  ++   G+ ++    +  M    
Sbjct: 453 LIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQN 512

Query: 178 VEQDVVAVNSLLSAICRQ-ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA 236
              D+  +N+ +  + +  E +  RA+    + ++ V PD  S++IL+ G  K G   E 
Sbjct: 513 CSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFV-PDARSYSILIHGLIKAGFANET 571

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
            + F  M E  +       AY   +    +  +V++A + L  MK +   PT+  + + +
Sbjct: 572 YELFYSMKE--QGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVI 629

Query: 297 DILVKLNDSTHAVQLWD----------------IMVGIGF-----------------NLM 323
           D L K++    A  L++                ++ G G                   L 
Sbjct: 630 DGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLT 689

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           PNL  +N+++  L   ++++     F  M      P+ +TY ++   L K ++ ++   F
Sbjct: 690 PNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVF 749

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
           + EM K   +P+ ++  T I+ L  A     A  +++    NG +P  A  N ++ GL N
Sbjct: 750 WQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSN 809

Query: 444 LGRLSDVRRFAEEMLNRRILIYEVT 468
             R  D     EE   R + I+  T
Sbjct: 810 GNRAMDAFSLFEETRRRGLPIHNKT 834


>gi|297797613|ref|XP_002866691.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312526|gb|EFH42950.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 638

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/403 (22%), Positives = 168/403 (41%), Gaps = 9/403 (2%)

Query: 62  HASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL--SPYAWNLM 119
           H+    +E AL  +G+   P L+  VL    D+ +    FF WA +  R   S   +  M
Sbjct: 95  HSRVPKLELALNESGVELRPGLIERVLNRCGDAGNLGYRFFVWAAKQPRYCHSIEVYKSM 154

Query: 120 VDVLGKNGRFEQMWNAVRVMKEDG--VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           V +L K  +F  +W  +  M+++   ++    F  +   +  A    +A+   D M   G
Sbjct: 155 VKILSKMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFASADMVKKAIEVLDEMPTFG 214

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
           +E D      LL A+C+       A +    ++     +   F  LL GW +E  + EA 
Sbjct: 215 LEPDEYVFGCLLDALCKH-GSVKDAAKLFEDMRLRFPVNLRYFTSLLYGWCREEKMMEAK 273

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297
               +M E   + P+ ++ Y   L       ++ +A   L+ M+     P    ++  + 
Sbjct: 274 YVLVQMKEA-GFEPD-IVDYTNLLSGYANAGKMADAYDLLKDMRRRGFEPNATCYTVLIQ 331

Query: 298 ILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGA 357
            L K++    A++++  M    +    +++ Y A++   C    +D  +   D M+  G 
Sbjct: 332 ALCKVDRMEEAMKVFVEMER--YECEADVVTYTALVSGFCKWGKIDKCYLVLDDMIKKGL 389

Query: 358 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 417
            P  LTY  I     K +++ E  +   +M + E+ P        I +     E + A+ 
Sbjct: 390 MPSQLTYMHIMAAHEKKEKLIECLELMEKMKQIEYHPDIGIYNVVIRLACKLGEVKEAVR 449

Query: 418 IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           +WN +  NG+ P   +   ++ GL + G L +     +EM+ R
Sbjct: 450 LWNEMEGNGLSPGADTFVIIINGLTSQGCLLEACDHFKEMVAR 492


>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63130, mitochondrial; Flags: Precursor
 gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
 gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
 gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
 gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/377 (20%), Positives = 169/377 (44%), Gaps = 8/377 (2%)

Query: 83  LVHEVLQLSYDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE 141
           L+H + +  ++  S AV    R   +G +     + ++V+ L K G  +   + ++ M++
Sbjct: 192 LIHGLFR--HNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQ 249

Query: 142 DGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS 200
             +   +  + +I D+ C     ++A+  F  M   G+  +VV  NSL+  +C     + 
Sbjct: 250 GKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSD 309

Query: 201 RALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF 260
            +    + +++ ++P+  +F+ L++ + KEG + EA K + EM++R   +P+ +  Y + 
Sbjct: 310 ASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR-SIDPD-IFTYSSL 367

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF 320
           +       ++DEA     +M  ++CFP +  ++  +    K       ++L+  M   G 
Sbjct: 368 INGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRG- 426

Query: 321 NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEV 380
            L+ N + Y  +I       + DN    F QMV  G  PD +TY+++ + L  N +V   
Sbjct: 427 -LVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETA 485

Query: 381 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 440
              F  + +++ +P        I  +  A + E   +++  +   G+ P   +   ++ G
Sbjct: 486 LVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSG 545

Query: 441 LRNLGRLSDVRRFAEEM 457
               G   +      EM
Sbjct: 546 FCRKGLKEEADALFREM 562



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 81/361 (22%), Positives = 158/361 (43%), Gaps = 7/361 (1%)

Query: 119 MVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           ++  + K  +F+ + +    M+  G+  +L T++ + + +C   +   A+     M   G
Sbjct: 87  LLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLG 146

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEA 236
            E D+V +NSLL+  C   N+ S A+  + ++ ++   PD  +F  L+ G  +     EA
Sbjct: 147 YEPDIVTLNSLLNGFC-HGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEA 205

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
                 MV +    P+ ++ Y   +  L +   +D AL  L+ M+     P +  ++  +
Sbjct: 206 VALVDRMVVK-GCQPD-LVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTII 263

Query: 297 DILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG 356
           D L    +   A+ L+  M   G  + PN++ YN++I  LCN     +  R    M+   
Sbjct: 264 DALCNYKNVNDALNLFTEMDNKG--IRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERK 321

Query: 357 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 416
             P+ +T++ + +  +K  ++ E EK + EMIK    P     ++ I      D  + A 
Sbjct: 322 INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAK 381

Query: 417 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
            ++  ++     P   + N L+ G     R+ +      EM  R ++   VT   L   F
Sbjct: 382 HMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGF 441

Query: 477 Y 477
           +
Sbjct: 442 F 442



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 151/337 (44%), Gaps = 6/337 (1%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  F+ +  +     K+D  +   + M   G+  ++   + L++  CR+ +Q S AL  
Sbjct: 80  SIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRR-SQLSLALAV 138

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L ++ K+  +PD  +   LL G+     + +A    G+MVE   + P+    + T +  L
Sbjct: 139 LAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVE-MGYQPDS-FTFNTLIHGL 196

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
            R  +  EA+  +  M  + C P L  +   ++ L K  D   A+ L   M      + P
Sbjct: 197 FRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQ--GKIEP 254

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
            +++YN +I  LCN  +V++    F +M   G  P+ +TYN +  CL    R  +  +  
Sbjct: 255 GVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLL 314

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
            +MI+ +  P  +  +  I   +   +   A ++++ +++  I P   + + L+ G    
Sbjct: 315 SDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMH 374

Query: 445 GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
            RL + +   E M+++      VT + L K F    R
Sbjct: 375 DRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKR 411



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 85/371 (22%), Positives = 158/371 (42%), Gaps = 42/371 (11%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y ++++++   +  +       + ++MK      + T  S+ + +C   +  +AV     
Sbjct: 117 YTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQ 176

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEG 231
           M   G + D    N+L+  + R  N+ S A+  ++R V K   PD  ++ I++ G  K G
Sbjct: 177 MVEMGYQPDSFTFNTLIHGLFRH-NRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRG 235

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN------- 284
           +++ A     +M E+ +  P  V+ Y T +  L   K V++AL     M  +        
Sbjct: 236 DIDLALSLLKKM-EQGKIEP-GVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVT 293

Query: 285 ------CF----------------------PTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
                 C                       P +  FS  +D  VK      A +L+D M+
Sbjct: 294 YNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI 353

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
               +  P++  Y+++I   C +D +D     F+ M+    FP+ +TYN + +   K KR
Sbjct: 354 KRSID--PDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKR 411

Query: 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 436
           V E  + F EM +       +   T I     A E + A  ++  ++ +G+LP   + + 
Sbjct: 412 VDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSI 471

Query: 437 LLVGLRNLGRL 447
           LL GL N G++
Sbjct: 472 LLDGLCNNGKV 482



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 64/332 (19%), Positives = 128/332 (38%), Gaps = 37/332 (11%)

Query: 91  SYDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLP 148
           +Y + + A++ F     +G R +   +N ++  L   GR+      +  M E  +  ++ 
Sbjct: 268 NYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVV 327

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF+++ D++   GK  EA   +D M    ++ D+   +SL++  C  +        F   
Sbjct: 328 TFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM 387

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           + K   P+  ++  L++G+ K   V+E  + F EM +R      + + Y T +    + +
Sbjct: 388 ISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVG--NTVTYTTLIHGFFQAR 445

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL----------------- 311
           + D A    + M  +   P +  +S  LD L        A+ +                 
Sbjct: 446 ECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYN 505

Query: 312 ---------------WDIMVGIGF-NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
                          WD+   +    + PN++ Y  ++   C     +     F +M   
Sbjct: 506 IMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEE 565

Query: 356 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
           G  PDS TYN +    +++       +   EM
Sbjct: 566 GPLPDSGTYNTLIRAHLRDGDKAASAELIREM 597



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 64/307 (20%), Positives = 110/307 (35%), Gaps = 70/307 (22%)

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM- 315
           Y    I  +   ++D+A+     M     FP++  FS  L  + K+N     + L + M 
Sbjct: 49  YRKISINRLNDLKLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQ 108

Query: 316 -VGIGFNLM-------------------------------PNLIMYNAVIGLLCNNDDVD 343
            +GI  NL                                P+++  N+++   C+ + + 
Sbjct: 109 NLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRIS 168

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
           +      QMV  G  PDS T+N +   L ++ R  E       M+    QP  +     +
Sbjct: 169 DAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVV 228

Query: 404 TMLLDADEPEIAIE---------------IWNYILE--------------------NGIL 428
             L    + ++A+                I+N I++                     GI 
Sbjct: 229 NGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIR 288

Query: 429 PLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDI 486
           P   + N L+  L N GR SD  R   +M+ R+I    VT   L  AF  E +      +
Sbjct: 289 PNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKL 348

Query: 487 FDSLERR 493
           +D + +R
Sbjct: 349 YDEMIKR 355


>gi|413916119|gb|AFW56051.1| hypothetical protein ZEAMMB73_517553 [Zea mays]
          Length = 663

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 160/356 (44%), Gaps = 5/356 (1%)

Query: 109 QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAV 167
           ++ S + +N ++  L   G  +++ +    M+ +G++ ++ T+ ++      +G+ + A 
Sbjct: 298 KKASSFTYNPLITGLLARGFVKKVDDLQLEMENEGIMPTVVTYNAMIHGLLQSGQIEAAQ 357

Query: 168 MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW 227
             F  M   G+  DV+  NSLL+  C+  NQ    L F +  +  + P   ++ IL++G+
Sbjct: 358 AKFVEMRAMGLLPDVITYNSLLNGYCKAGNQKEALLLFGDLRRAGLAPTVLTYNILIDGY 417

Query: 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
            + G++EEA +   EMVE  +     V  Y   +        +    +F   M  +   P
Sbjct: 418 CRLGDLEEARRLKEEMVE--QGCLPDVYTYTILMKGSHNVCSLAMTREFFDEMLSKGLRP 475

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFR 347
               ++  +   + L D + + QL ++++  G +   + + YN +I  LC   ++ +   
Sbjct: 476 DCFAYNTRICAEITLGDISKSFQLREVIMLEGIS--SDTVTYNILIDGLCKTGNLKDAEE 533

Query: 348 FFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 407
              QM+ +G  PD +TY  +     +   + E  KFF++MI +   P+ +     I    
Sbjct: 534 LMMQMISNGLQPDCITYTCLIHAHCERGFLREARKFFNDMISDGLPPSAVTYTVIIHAYC 593

Query: 408 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
                  A   +  +LE G+ P E + N L+  L  +GR     R   EML R ++
Sbjct: 594 RRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLAYRHFYEMLERGLV 649



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 146/327 (44%), Gaps = 7/327 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N M+  L ++G+ E        M+  G+L  + T+ S+ + YC AG   EA++ F  + 
Sbjct: 340 YNAMIHGLLQSGQIEAAQAKFVEMRAMGLLPDVITYNSLLNGYCKAGNQKEALLLFGDLR 399

Query: 175 MHGVEQDVVAVNSLLSAICRQEN-QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
             G+   V+  N L+   CR  + + +R L+    V++   PD  ++ IL++G     ++
Sbjct: 400 RAGLAPTVLTYNILIDGYCRLGDLEEARRLKE-EMVEQGCLPDVYTYTILMKGSHNVCSL 458

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
               + F EM+ +    P+   AY T +   I    + ++ +   V+  E        ++
Sbjct: 459 AMTREFFDEMLSK-GLRPD-CFAYNTRICAEITLGDISKSFQLREVIMLEGISSDTVTYN 516

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +D L K  +   A +L   M+  G  L P+ I Y  +I   C    +    +FF+ M+
Sbjct: 517 ILIDGLCKTGNLKDAEELMMQMISNG--LQPDCITYTCLIHAHCERGFLREARKFFNDMI 574

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G  P ++TY +I     +   ++    +F +M++   +P  +     I  L      +
Sbjct: 575 SDGLPPSAVTYTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQ 634

Query: 414 IAIEIWNYILENGILPLEASANELLVG 440
           +A   +  +LE G++P + +   L+ G
Sbjct: 635 LAYRHFYEMLERGLVPNKYTYTLLIDG 661



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 71/361 (19%), Positives = 143/361 (39%), Gaps = 41/361 (11%)

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ--ENQTSRALEFLNRVKKIVDPDG 217
           A ++D+       M   G+E  +V  N+LL +  ++  +++    L+ +        P+ 
Sbjct: 209 AARWDDMSAVHAEMLQLGIEPSIVTYNTLLDSFSKEGRKDKIDMLLKEMEARGSSCLPND 268

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEM-----VERFEWNP--------------------- 251
            ++ +++ G  ++G +EEA +   EM        F +NP                     
Sbjct: 269 VTYNVVIAGLARKGYLEEAAELVEEMRLSKKASSFTYNPLITGLLARGFVKKVDDLQLEM 328

Query: 252 ------EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS 305
                   V+ Y   +  L++  Q++ A      M+     P +  +++ L+   K  + 
Sbjct: 329 ENEGIMPTVVTYNAMIHGLLQSGQIEAAQAKFVEMRAMGLLPDVITYNSLLNGYCKAGNQ 388

Query: 306 THAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYN 365
             A+ L+  +   G  L P ++ YN +I   C   D++   R  ++MV  G  PD  TY 
Sbjct: 389 KEALLLFGDLRRAG--LAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVYTYT 446

Query: 366 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 425
           ++ +       +    +FF EM+    +P      T I   +   +   + ++   I+  
Sbjct: 447 ILMKGSHNVCSLAMTREFFDEMLSKGLRPDCFAYNTRICAEITLGDISKSFQLREVIMLE 506

Query: 426 GILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVTMHK-LKKAFYNES 480
           GI     + N L+ GL   G L D      +M++  +    + Y   +H   ++ F  E+
Sbjct: 507 GISSDTVTYNILIDGLCKTGNLKDAEELMMQMISNGLQPDCITYTCLIHAHCERGFLREA 566

Query: 481 R 481
           R
Sbjct: 567 R 567



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 138/326 (42%), Gaps = 29/326 (8%)

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAI---CRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           +F  M+ HGV  DV   N +L  +    R ++ ++   E L   +  ++P   ++  LL+
Sbjct: 183 AFREMASHGVAPDVKDCNKVLRVLRDAARWDDMSAVHAEML---QLGIEPSIVTYNTLLD 239

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG---KQVDEALKFLRVMKG 282
            + KEG  ++ +    EM  R      + + Y   +  L R    ++  E ++ +R+ K 
Sbjct: 240 SFSKEGRKDKIDMLLKEMEARGSSCLPNDVTYNVVIAGLARKGYLEEAAELVEEMRLSKK 299

Query: 283 ENCFPTLKFFSNAL--DILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
            + F      +  L    + K++D    +QL     GI    MP ++ YNA+I  L  + 
Sbjct: 300 ASSFTYNPLITGLLARGFVKKVDD----LQLEMENEGI----MPTVVTYNAMIHGLLQSG 351

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
            ++     F +M   G  PD +TYN +     K     E    F ++ +    PT L   
Sbjct: 352 QIEAAQAKFVEMRAMGLLPDVITYNSLLNGYCKAGNQKEALLLFGDLRRAGLAPTVLTYN 411

Query: 401 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
             I       + E A  +   ++E G LP   +   L+ G  N+  L+  R F +EML++
Sbjct: 412 ILIDGYCRLGDLEEARRLKEEMVEQGCLPDVYTYTILMKGSHNVCSLAMTREFFDEMLSK 471

Query: 461 RI----------LIYEVTMHKLKKAF 476
            +          +  E+T+  + K+F
Sbjct: 472 GLRPDCFAYNTRICAEITLGDISKSF 497


>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
 gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
          Length = 440

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 163/370 (44%), Gaps = 18/370 (4%)

Query: 116 WNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++  L   GR         R++K      + T+ ++   +C  G+ DEA+  FD   
Sbjct: 13  YNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGELDEALKIFDGAV 72

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNV 233
             G   DVV  N+L++  C+ + +   A   L R V + + PD  ++  L+ G  K G V
Sbjct: 73  KRGFVPDVVTYNALINGFCKAD-KLDEAQRILQRMVSENLVPDVVTYNSLVNGLCKNGRV 131

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRG-KQVDEALKFLRVMKGENCFPTLKFF 292
           +EA      ++    ++P +V+ Y T +  L R  + V EALK    +  +   P +  +
Sbjct: 132 DEARM----LIVDKGFSP-NVITYSTLISGLCRELRGVSEALKLFGSVLKQGYEPEVPTY 186

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  +D L+K +    A +L+  +V  G  L P+ I Y   I  LC    V++       M
Sbjct: 187 NILIDGLLKEDRVNEAFELFSGLVKHG--LEPDAITYTVFIDGLCKAGRVEDALLMLKDM 244

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
              G  PD +++N +   L K KRV E E     M      P  ++  T I     A + 
Sbjct: 245 DEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKW 304

Query: 413 EIAIEIWNYILENGILPLEASANELLVGL---RNLGRLSDVRRFAEEMLNRR----ILIY 465
           + A+  +  +L+ G+ P   + N L+ GL   R  GR+ +     + M+ +     ++ Y
Sbjct: 305 KKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTY 364

Query: 466 EVTMHKLKKA 475
              +  L KA
Sbjct: 365 SALIDGLGKA 374



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 128/270 (47%), Gaps = 8/270 (2%)

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M  HG   + +  N+LLS +C     +     +   +K    PD  ++  LL G+ K G 
Sbjct: 1   MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGE 60

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           ++EA K F   V+R  + P+ V+ Y   +    +  ++DEA + L+ M  EN  P +  +
Sbjct: 61  LDEALKIFDGAVKR-GFVPD-VVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTY 118

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN-DDVDNVFRFFDQ 351
           ++ ++ L K      A  L   +V  GF+  PN+I Y+ +I  LC     V    + F  
Sbjct: 119 NSLVNGLCKNGRVDEARML---IVDKGFS--PNVITYSTLISGLCRELRGVSEALKLFGS 173

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           ++  G  P+  TYN++ + L+K  RV+E  + F  ++K+  +P  +     I  L  A  
Sbjct: 174 VLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGR 233

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGL 441
            E A+ +   + E G +P   S N ++ GL
Sbjct: 234 VEDALLMLKDMDEKGCVPDVVSHNAVINGL 263



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 147/333 (44%), Gaps = 14/333 (4%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLN 207
           T+ ++    C  G+  +A   ++ M   G   DVV  N+LL   C+   +   AL+ F  
Sbjct: 12  TYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKV-GELDEALKIFDG 70

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            VK+   PD  ++  L+ G+ K   ++EA +    MV   E     V+ Y + +  L + 
Sbjct: 71  AVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVS--ENLVPDVVTYNSLVNGLCKN 128

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVK-LNDSTHAVQLWDIMVGIGFNLMPNL 326
            +VDEA + L V KG +  P +  +S  +  L + L   + A++L+  ++  G+   P +
Sbjct: 129 GRVDEA-RMLIVDKGFS--PNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYE--PEV 183

Query: 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 386
             YN +I  L   D V+  F  F  +V HG  PD++TY +  + L K  RV +      +
Sbjct: 184 PTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKD 243

Query: 387 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 446
           M +    P  ++    I  L      + A  + + +   G  P   S N L+ G    G+
Sbjct: 244 MDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGK 303

Query: 447 LSDVRRFAEEMLNR----RILIYEVTMHKLKKA 475
                   +EML R     ++ Y + +  L KA
Sbjct: 304 WKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKA 336



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 116/257 (45%), Gaps = 8/257 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N+++D L K  R  + +     + + G+     T+    D  C AG+ ++A++    M 
Sbjct: 186 YNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMD 245

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G   DVV+ N++++ +C+++      +       K   P+  SF  L+ G  + G  +
Sbjct: 246 EKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWK 305

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ---VDEALKFLRVMKGENCFPTLKF 291
           +A  TF EM++R       V+ Y   +  L + +Q   + EA+     M  +   P +  
Sbjct: 306 KAMTTFKEMLKR--GVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVT 363

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           +S  +D L K      A +L   M   G   +PN+  YN++I  LC  + VD     F  
Sbjct: 364 YSALIDGLGKAGKLDDARRLLGAMEAKG--CIPNVYTYNSLISGLCGLEKVDEALELFVA 421

Query: 352 MVFHGAFPDSLTYNMIF 368
           MV  G  PD++TY  I 
Sbjct: 422 MVEKGCVPDTITYGTII 438



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 78/352 (22%), Positives = 153/352 (43%), Gaps = 43/352 (12%)

Query: 116 WNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N +++   K  + ++    + R++ E+ V  + T+ S+ +  C  G+ DEA M   ++ 
Sbjct: 83  YNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLVNGLCKNGRVDEARM---LIV 139

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNV 233
             G   +V+  ++L+S +CR+    S AL+    V K+  +P+  ++ IL++G  KE  V
Sbjct: 140 DKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYEPEVPTYNILIDGLLKEDRV 199

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            EA + F  +V +    P+ +  Y  F+  L +  +V++AL  L+ M  + C P +   +
Sbjct: 200 NEAFELFSGLV-KHGLEPDAI-TYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHN 257

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIG-------FNLM----------------------- 323
             ++ L K      A  L   M   G       FN +                       
Sbjct: 258 AVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKR 317

Query: 324 ---PNLIMYNAVIGLLC---NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
              P ++ YN ++  LC       +      FD M+  G  PD +TY+ + + L K  ++
Sbjct: 318 GVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKL 377

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
            +  +    M      P      + I+ L   ++ + A+E++  ++E G +P
Sbjct: 378 DDARRLLGAMEAKGCIPNVYTYNSLISGLCGLEKVDEALELFVAMVEKGCVP 429



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 143/331 (43%), Gaps = 51/331 (15%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS--LPTFASIFDSYCGAGK-YDEAVMSFDV 172
           +N +V+ L KNGR ++     R++  D   S  + T++++    C   +   EA+  F  
Sbjct: 118 YNSLVNGLCKNGRVDE----ARMLIVDKGFSPNVITYSTLISGLCRELRGVSEALKLFGS 173

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAILLEGWEKEG 231
           +   G E +V   N L+  + + E++ + A E F   VK  ++PD  ++ + ++G  K G
Sbjct: 174 VLKQGYEPEVPTYNILIDGLLK-EDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAG 232

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP---- 287
            VE+A     +M E+    P+ V+++   +  L + K+VDEA   L  M+ + C P    
Sbjct: 233 RVEDALLMLKDMDEK-GCVPD-VVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAIS 290

Query: 288 -------------------------------TLKFFSNALDILVKLNDS---THAVQLWD 313
                                          T+  ++  +D L K         A+ L+D
Sbjct: 291 FNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFD 350

Query: 314 IMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 373
            M+  G   +P+++ Y+A+I  L     +D+  R    M   G  P+  TYN +   L  
Sbjct: 351 AMIEKG--RVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCG 408

Query: 374 NKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
            ++V E  + F  M++    P  +   T I+
Sbjct: 409 LEKVDEALELFVAMVEKGCVPDTITYGTIIS 439



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 78/171 (45%), Gaps = 2/171 (1%)

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           PN I YNA++  LCN   + +    +++M+  G  PD +TYN +     K   + E  K 
Sbjct: 8   PNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGELDEALKI 67

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
           F   +K  + P  +     I     AD+ + A  I   ++   ++P   + N L+ GL  
Sbjct: 68  FDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLVNGLCK 127

Query: 444 LGRLSDVRRF-AEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERR 493
            GR+ + R    ++  +  ++ Y   +  L +     S +++ +F S+ ++
Sbjct: 128 NGRVDEARMLIVDKGFSPNVITYSTLISGLCRELRGVSEALK-LFGSVLKQ 177



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 28/127 (22%), Positives = 58/127 (45%)

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 414
           HG +P+ +TYN +   L    R+ + +  +  MIK  + P  +   T +       E + 
Sbjct: 4   HGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGELDE 63

Query: 415 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKK 474
           A++I++  ++ G +P   + N L+ G     +L + +R  + M++  ++   VT + L  
Sbjct: 64  ALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLVN 123

Query: 475 AFYNESR 481
                 R
Sbjct: 124 GLCKNGR 130



 Score = 39.7 bits (91), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 1/86 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G+      ++ ++D LGK G+ +     +  M+  G + ++ T+ S+    CG  K DE
Sbjct: 355 KGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLEKVDE 414

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSA 191
           A+  F  M   G   D +   +++SA
Sbjct: 415 ALELFVAMVEKGCVPDTITYGTIISA 440


>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
          Length = 577

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 142/276 (51%), Gaps = 7/276 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +++++D L K G+ E     +R M E GV   + T+++I D YC  G+ D A   F+V
Sbjct: 274 HTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNV 333

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEG 231
           +   G++ ++ + + L++  C+++N  ++A++    + +K + PD  +++ +L G  + G
Sbjct: 334 LRDKGIKPNIFSYSILINGYCKKKN-LAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVG 392

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            + +A K F EM+ R    P+ +  + T L    +   V+EA+     ++       + F
Sbjct: 393 RIGDAKKIFDEML-RVGPTPD-ICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNISF 450

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           ++  ++ L K +    A  +++ +  IG  L+P++  YN +I   C     D V     +
Sbjct: 451 YTVVINGLCKNDRVREAHAIFEKLPSIG--LIPDVRTYNVMITGFCREGLFDEVKGILRK 508

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
           M  +G   +++TYN+I +   ++ ++ E+  F  EM
Sbjct: 509 MEDNGCPANNITYNVIMQGFFRSNKISEIVSFMKEM 544



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 149/341 (43%), Gaps = 15/341 (4%)

Query: 129 FEQMWN------AVRVMKEDGVLSLPTFASIFD----SYCGAGKYDEAVMSFDVMSMHGV 178
           F+ M N       V + +E  +L +P   SI +    SYC   + D A     +    G+
Sbjct: 69  FKTMINMKHYSAVVSLFREMRILGIPISDSILNIVTNSYCLRHRIDCAFSVLPIYLKTGI 128

Query: 179 EQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEAN 237
             +VV  N+LL  +  +   T   + F   V+ KI +P+   +  ++ G  K G+ E+  
Sbjct: 129 PFNVVTFNTLLGGLFAENKVTDAVVLFKKLVREKICEPNEVMYGTVMNGLSKRGHTEKT- 187

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297
            +   ++E+    P+ V  Y   +  L +   +D A+  L  MK +N  P +  +++ +D
Sbjct: 188 LSLLRIMEQGNTKPD-VRTYSIVIDALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLID 246

Query: 298 ILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGA 357
            L KL        L   MV +  N  PN+  ++ +I  LC    V++       M+  G 
Sbjct: 247 GLCKLGQWEKVKTLLSEMVNLNIN--PNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGV 304

Query: 358 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 417
            PD +TY+ I +      +V    + F+ +     +P   + +  I           A++
Sbjct: 305 EPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQ 364

Query: 418 IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
           ++  I + G+ P   + + +L GL  +GR+ D ++  +EML
Sbjct: 365 LFGEISQKGLKPDTVTYSTILHGLIEVGRIGDAKKIFDEML 405



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 79/390 (20%), Positives = 171/390 (43%), Gaps = 9/390 (2%)

Query: 96  SSAVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFAS 152
           + AV  F+   R +   P    +  +++ L K G  E+  + +R+M++      + T++ 
Sbjct: 149 TDAVVLFKKLVREKICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSI 208

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI 212
           + D+ C     D A+   + M    +  ++   NSL+  +C+   Q  +    L+ +  +
Sbjct: 209 VIDALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKL-GQWEKVKTLLSEMVNL 267

Query: 213 -VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD 271
            ++P+  +F+IL++G  KEG VE+A++    M+E+    P+ ++ Y   +       QVD
Sbjct: 268 NINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEK-GVEPD-IITYSAIMDGYCLRGQVD 325

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA 331
            A +   V++ +   P +  +S  ++   K  +   A+QL+  +   G  L P+ + Y+ 
Sbjct: 326 RARRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKG--LKPDTVTYST 383

Query: 332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
           ++  L     + +  + FD+M+  G  PD   ++ +     K   V E    F ++ +N 
Sbjct: 384 ILHGLIEVGRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNR 443

Query: 392 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 451
                      I  L   D    A  I+  +   G++P   + N ++ G    G   +V+
Sbjct: 444 EDTNISFYTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGFCREGLFDEVK 503

Query: 452 RFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
               +M +       +T + + + F+  ++
Sbjct: 504 GILRKMEDNGCPANNITYNVIMQGFFRSNK 533


>gi|326504802|dbj|BAK06692.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 522

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/369 (24%), Positives = 158/369 (42%), Gaps = 22/369 (5%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM- 173
           A++ +VD LG+  +F+  W  V     DG  +  TFA +   Y  AG   +AV +FD M 
Sbjct: 116 AYDAVVDALGRAHQFDAAWRLVVEAAADGAATPRTFAVLARRYVAAGLTRQAVRAFDDME 175

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
           +  G E D     +LL  +C+ +     A+E  N+ K   +P+   + IL+ GW K    
Sbjct: 176 AFLGREPDAQEFTTLLDTLCKYKYPKV-AVEVFNKRKYKYEPNEKMYTILIYGWCKVNRS 234

Query: 234 EEANKTFGEMVER-FEWNPEHVLAYETFLITLIR----------GKQVDEALKFLRVMKG 282
           + A K   +M++   E N   ++ Y   L  + R           + V+ A   L+ M  
Sbjct: 235 DMAQKFLKDMIDHGIEPN---IVTYNILLNGICRHASLHPDNRFDRTVNAAENLLKEMND 291

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
               P +  +S  L +  + + +   + ++  M   G  + P +  Y +VI  L +   +
Sbjct: 292 RGIEPDVTSYSIILHVYSRAHKAELCLCMFRSMKDRG--ICPTVATYTSVIKCLASCGRL 349

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT- 401
           ++      +MV  G  P   TYN  F+     K V    + +++M K    PT  +  + 
Sbjct: 350 EDAESLLGEMVSEGVCPSPATYNCFFKEYRGRKDVSGALELYNKM-KAPCSPTAPDIHSY 408

Query: 402 --AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
              + M +  D  E  +E+WN + E  + P   S   L+ G     +  +  +F  EM+ 
Sbjct: 409 NILLGMFIKLDRHETVMELWNDMCERAVGPDLDSYTLLVHGFCAKEKWREACQFFMEMIE 468

Query: 460 RRILIYEVT 468
           +  L  ++T
Sbjct: 469 KGFLPQKIT 477


>gi|451798815|gb|AGF69111.1| PPR [Raphanus sativus]
          Length = 479

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 159/359 (44%), Gaps = 22/359 (6%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           +F  +   +C   K   A+ +F  ++  G    +V  N+LL  +C  E++ S AL+  ++
Sbjct: 17  SFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCV-EDRVSEALDLFHQ 75

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           + K   P+  +F  L+ G  +EG V EA      MVE     P  +  Y T +  + +  
Sbjct: 76  MCK---PNVVTFTTLMNGLCREGRVVEAVALLDRMVED-GLQPNQI-TYGTIVDGMCKMG 130

Query: 269 QVDEALKFLRVMKG-ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
               AL  LR M+   +  P +  +S  +D L K    T A  L+  M   G  + P+++
Sbjct: 131 DTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKG--IFPDIV 188

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            Y+ +I   C++       R   +M+     PD +T++ +   L+K   ++  +    EM
Sbjct: 189 TYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEM 248

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE-----------NGILPLEASANE 436
           I +   P  + C T +  L D+ + + A+E++  + +           NG+ P   + N 
Sbjct: 249 ISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNI 308

Query: 437 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLERR 493
           L+ GL N G+  +     EEM +R I+   VT   +      +SR      +FDS+  +
Sbjct: 309 LISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSK 367



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 89/405 (21%), Positives = 173/405 (42%), Gaps = 20/405 (4%)

Query: 93  DSPSSAVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPT 149
           D  S A+D F      Q   P    +  +++ L + GR  +    +  M EDG+  +  T
Sbjct: 64  DRVSEALDLFH-----QMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQIT 118

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMS-MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           + +I D  C  G    A+     M  +  ++ DVV  ++++  + +    T     F+  
Sbjct: 119 YGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEM 178

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
             K + PD  +++ ++ G+   G   EA +   EM+ R + +P+ V+ +   +  L++  
Sbjct: 179 QDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVR-KISPD-VVTFSGLINALVKEG 236

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILV---KLNDSTH---AVQ--LWDIMVGIGF 320
            ++ A   L+ M      P +   +  LD L    KL D+     A+Q  + DI     F
Sbjct: 237 DLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAF 296

Query: 321 N-LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
           N + P++  YN +I  L N          +++M   G  PD++TY+ +   L K  R+ E
Sbjct: 297 NGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDE 356

Query: 380 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 439
             + F  M    + P  +   T IT    A   +  +E++  +   GI+    +   L+ 
Sbjct: 357 ATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIR 416

Query: 440 GLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMR 484
           G R +G ++      +EM++  +    +T+  +    +++    R
Sbjct: 417 GFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSKEELKR 461



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/334 (21%), Positives = 139/334 (41%), Gaps = 14/334 (4%)

Query: 97  SAVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASI 153
           SA++  R       + P    ++ ++D L K+GR     N    M++ G+   + T++ +
Sbjct: 134 SALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCM 193

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV 213
            + +C +GK+ EA      M +  +  DVV  + L++A+ ++ +  S        +   V
Sbjct: 194 INGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGV 253

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEM---------VERFEWNPEHVLAYETFLITL 264
            P+  +   LL+G    G +++A + F  M            F      V  Y   +  L
Sbjct: 254 CPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGL 313

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
           I   +  EA +    M      P    +S+ ++ L K +    A Q++D M    F+  P
Sbjct: 314 INEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFS--P 371

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           N++ +N +I   C    VD+    F +M   G   +++TY  +     K   ++     F
Sbjct: 372 NIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIF 431

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 418
            EMI +   P  +     +T L   +E + A+ +
Sbjct: 432 QEMISSGVYPDTITIRNMLTGLWSKEELKRALAM 465



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 128/285 (44%), Gaps = 11/285 (3%)

Query: 176 HGVE--QDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGN 232
           HG++   D+ + N L+   C   ++   AL    ++ K+   P   +F  LL G   E  
Sbjct: 7   HGLQIPCDIYSFNILIKCFCSC-SKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDR 65

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           V EA   F +M +       +V+ + T +  L R  +V EA+  L  M  +   P    +
Sbjct: 66  VSEALDLFHQMCK------PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITY 119

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
              +D + K+ D+  A+ L   M  +  ++ P++++Y+A+I  L  +    +    F +M
Sbjct: 120 GTIVDGMCKMGDTVSALNLLRKMEELS-HIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEM 178

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
              G FPD +TY+ +      + +  E ++   EM+  +  P  +  +  I  L+   + 
Sbjct: 179 QDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDL 238

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
             A ++   ++ +G+ P   + N LL GL + G+L D     + M
Sbjct: 239 NSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAM 283


>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 87/376 (23%), Positives = 167/376 (44%), Gaps = 7/376 (1%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
            +G RLS  ++ ++++ + K G        +R ++   +  ++  ++ I D  C     D
Sbjct: 156 AQGFRLSGISYGILINGVCKIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVD 215

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAIL 223
           EA   +  M   G+  DVV  + L+S  C    Q +RA++ LN  V + ++PD  ++ IL
Sbjct: 216 EAYDLYTEMVGKGISPDVVTYSILVSGFC-IVGQLNRAIDLLNEMVLENINPDIYTYTIL 274

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           ++   KEG V+EA      MV+        V+ Y T +       +V+ A +    M   
Sbjct: 275 VDALCKEGKVKEAENVLAVMVK--ACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQM 332

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
              P +  +S  ++ L K+     A+ L++ +     N++P+ + Y ++I  LC +  + 
Sbjct: 333 GVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQK--NMVPDTVTYTSLIDCLCKSGRIS 390

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
            V+  FD+M+  G  PD +TYN + + L KN  +      F++M     +P        +
Sbjct: 391 YVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTILL 450

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
             L      + A+E +  +L  G      +   ++ GL   G L +       M +   +
Sbjct: 451 DGLCKVGRLKNALEFFQDLLTKGYCLNVRTYTVMINGLCKEGLLDEALALQSRMEDNGCI 510

Query: 464 IYEVTMHKLKKAFYNE 479
              VT   + +AF+++
Sbjct: 511 SDAVTFEIMIRAFFDK 526



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 64/317 (20%), Positives = 124/317 (39%), Gaps = 42/317 (13%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y + ++VD L K G+ ++  N + VM +  V L +  ++++ D YC   + + A   F  
Sbjct: 269 YTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYT 328

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEG 231
           M+  GV  DV   + +++ +C+ + +   AL     + +K + PD  ++  L++   K G
Sbjct: 329 MTQMGVTPDVHCYSIMINGLCKIK-RVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSG 387

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            +      F EM++R +  P  V+ Y   +  L +   +D A+     MK +        
Sbjct: 388 RISYVWDLFDEMLDRGQ--PPDVITYNNLIDALCKNGHLDRAIALFNKMKDQA------- 438

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
                                         + PN+  +  ++  LC    + N   FF  
Sbjct: 439 ------------------------------IRPNVYTFTILLDGLCKVGRLKNALEFFQD 468

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           ++  G   +  TY ++   L K   + E       M  N      +     I    D DE
Sbjct: 469 LLTKGYCLNVRTYTVMINGLCKEGLLDEALALQSRMEDNGCISDAVTFEIMIRAFFDKDE 528

Query: 412 PEIAIEIWNYILENGIL 428
            + A ++   ++  G+L
Sbjct: 529 NDKAEKLVREMIARGLL 545



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 86/411 (20%), Positives = 159/411 (38%), Gaps = 79/411 (19%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T   I + +C  G+   A      +   G + + + +N+L+  +C  E +   AL F ++
Sbjct: 95  TLNIIINCFCHFGQVVLAFSGVSKILKLGYQPNTITLNTLMKGLC-LEGKVKEALRFHDK 153

Query: 209 V-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL------------ 255
           V  +     G S+ IL+ G  K G    A +     +ER+   P  V+            
Sbjct: 154 VLAQGFRLSGISYGILINGVCKIGETRAAIRLL-RRIERWSIRPNVVIYSMIIDRLCKDT 212

Query: 256 ----AYETFLITLIRG------------------KQVDEALKFLRVMKGENCFPTLKFFS 293
               AY+ +   + +G                   Q++ A+  L  M  EN  P +  ++
Sbjct: 213 LVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYT 272

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +D L K      A  +  +MV    NL  ++++Y+ ++   C  ++V+N  R F  M 
Sbjct: 273 ILVDALCKEGKVKEAENVLAVMVKACVNL--DVVVYSTLMDGYCLVNEVNNAKRVFYTMT 330

Query: 354 FHGA-----------------------------------FPDSLTYNMIFECLIKNKRVH 378
             G                                     PD++TY  + +CL K+ R+ 
Sbjct: 331 QMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGRIS 390

Query: 379 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 438
            V   F EM+     P  +     I  L      + AI ++N + +  I P   +   LL
Sbjct: 391 YVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTILL 450

Query: 439 VGLRNLGRLSDVRRFAEEMLNR----RILIYEVTMHKL-KKAFYNESRSMR 484
            GL  +GRL +   F +++L +     +  Y V ++ L K+   +E+ +++
Sbjct: 451 DGLCKVGRLKNALEFFQDLLTKGYCLNVRTYTVMINGLCKEGLLDEALALQ 501



 Score = 38.9 bits (89), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 47/248 (18%), Positives = 95/248 (38%), Gaps = 10/248 (4%)

Query: 232 NVEEANKTFGEMVERFEWNPE-HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           N ++A   F  M   F  +P  H   +   LI+L+  K+   A+   + M+     P   
Sbjct: 38  NADDAVSQFNHM---FHVHPTPHTFHFNKILISLVNVKRYPTAISLYKQMELSEVEPDYF 94

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
             +  ++          A      ++ +G+   PN I  N ++  LC    V    RF D
Sbjct: 95  TLNIIINCFCHFGQVVLAFSGVSKILKLGYQ--PNTITLNTLMKGLCLEGKVKEALRFHD 152

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
           +++  G     ++Y ++   + K        +    + +   +P  +  +  I  L    
Sbjct: 153 KVLAQGFRLSGISYGILINGVCKIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDT 212

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNRRILIYE 466
             + A +++  ++  GI P   + + L+ G   +G+L+       EM    +N  I  Y 
Sbjct: 213 LVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYT 272

Query: 467 VTMHKLKK 474
           + +  L K
Sbjct: 273 ILVDALCK 280


>gi|125580078|gb|EAZ21224.1| hypothetical protein OsJ_36877 [Oryza sativa Japonica Group]
          Length = 726

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 96/406 (23%), Positives = 177/406 (43%), Gaps = 19/406 (4%)

Query: 65  SDDIESALACTGIIPTPDLVHEVLQL-SYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVD 121
           S  +E+ L     + +P  V  VL+  +      A +FFRWA R  R   +P  ++ M+ 
Sbjct: 76  SPKLEAQLRQLLRVLSPPQVRAVLRAQARGDVRRAFEFFRWADRQWRYRHAPEVFDEMLS 135

Query: 122 VLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQ 180
           +L      +     VR+M   GV      FA +  SY  AGK   A+    +M   G   
Sbjct: 136 LLSNTRLHDPARRVVRLMIRRGVRRGTEQFAQLMLSYSRAGKLRSAMRVLHLMQKDGCAP 195

Query: 181 DV----VAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEE 235
           D+    +AVN L+ A      +  +ALEF  R++++ V+PD  ++  L++G      V +
Sbjct: 196 DISICNMAVNVLVVA-----GRVDKALEFAERMRRVGVEPDVYTYNCLIKGLCGARRVVD 250

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-NCFPTLKFFSN 294
           A +  G M++     P   ++Y T +  L + K+V+E    L+ M+ +   FP    ++ 
Sbjct: 251 AMEMIGVMLQ--NGCPPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNV 308

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
            +  L K   +  A++      G  F +  + + Y+A++   C N  +        +M+ 
Sbjct: 309 LIHGLAKHGHADEALEFLRESEGKRFRV--DEVGYSAIVHSFCLNGRMAEAKEIVGEMIS 366

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 414
            G  PD +TY+ + +   +   + +  K    M KN+ +P  +     +  L    +   
Sbjct: 367 KGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSE 426

Query: 415 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           A E+ N   E    P + + + ++ G R  G+L +      +ML +
Sbjct: 427 AWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQK 472



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 75/370 (20%), Positives = 151/370 (40%), Gaps = 15/370 (4%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV---LSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           +N+++  L K+G  ++    +R  + +G    +    +++I  S+C  G+  EA      
Sbjct: 306 YNVLIHGLAKHGHADEALEFLR--ESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGE 363

Query: 173 MSMHGVEQDVVAVNSLLSAICR--QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
           M   G + DVV  ++++   CR  + +Q  + ++ +   K    P+  +   LL G  K 
Sbjct: 364 MISKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHM--YKNDCKPNTVTHTALLNGLCKV 421

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           G   EA +   +  E + W P  +  Y   +    R  ++ E+   +  M  +  FPT  
Sbjct: 422 GKTSEAWELLNKSEEEW-WTPSDI-TYSVVMHGFRREGKLKESCDVVVQMLQKGFFPTTV 479

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
             +  +  L K      A    +     G  +  N++ +  VI       D+++     D
Sbjct: 480 EINLLIHALCKDRKPAEAKDFMEQCQSKGCTI--NVVNFTTVIHGFSRQGDLESALSLMD 537

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
            M      PD +TY ++ + L K  R+ E      +M+     PTP+   T I    +  
Sbjct: 538 DMYLSNRHPDVVTYTVVVDALGKKGRLKEATGLVEKMLNRGVLPTPVTYRTVIHRYCEKG 597

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 470
             E  + +   +L      ++++ N+++  L   G+L++      ++L    +    T H
Sbjct: 598 NLEDLLNLLEKMLARQ--EMKSAYNQVVEKLCAFGKLNEAYSLLYKILRTASVRDAQTCH 655

Query: 471 KLKKAFYNES 480
            L ++F N  
Sbjct: 656 ILMESFLNRG 665


>gi|451798817|gb|AGF69112.1| PPR [Raphanus sativus]
          Length = 479

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 159/359 (44%), Gaps = 22/359 (6%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           +F  +   +C   K   A+ +F  ++  G    +V  N+LL  +C  E++ S AL+  ++
Sbjct: 17  SFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCV-EDRVSEALDLFHQ 75

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           + K   P+  +F  L+ G  +EG V EA      MVE     P  +  Y T +  + +  
Sbjct: 76  MCK---PNVVTFTTLMNGLCREGRVVEAVALLDRMVED-GLQPNQI-TYGTIVDGMCKMG 130

Query: 269 QVDEALKFLRVMKG-ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
               AL  LR M+   +  P +  +S  +D L K    T A  L+  M   G  + P+++
Sbjct: 131 DTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKG--IFPDIV 188

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            Y+ +I   C++       R   +M+     PD +T++ +   L+K   ++  +    EM
Sbjct: 189 TYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEM 248

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE-----------NGILPLEASANE 436
           I +   P  + C T +  L D+ + + A+E++  + +           NG+ P   + N 
Sbjct: 249 ISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNI 308

Query: 437 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLERR 493
           L+ GL N G+  +     EEM +R I+   VT   +      +SR      +FDS+  +
Sbjct: 309 LISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSK 367



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 88/400 (22%), Positives = 172/400 (43%), Gaps = 20/400 (5%)

Query: 93  DSPSSAVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPT 149
           D  S A+D F      Q   P    +  +++ L + GR  +    +  M EDG+  +  T
Sbjct: 64  DRVSEALDLFH-----QMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQIT 118

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMS-MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           + +I D  C  G    A+     M  +  ++ DVV  ++++  + +    T     F+  
Sbjct: 119 YGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEM 178

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
             K + PD  +++ ++ G+   G   EA +   EM+ R + +P+ V+ +   +  L++  
Sbjct: 179 QDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVR-KISPD-VVTFSGLINALVKEG 236

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILV---KLNDSTH---AVQ--LWDIMVGIGF 320
            ++ A   L+ M      P +   +  LD L    KL D+     A+Q  + DI     F
Sbjct: 237 DLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAF 296

Query: 321 N-LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
           N + P++  YN +I  L N          +++M   G  PD++TY+ +   L K  R+ E
Sbjct: 297 NGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDE 356

Query: 380 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 439
             + F  M    + P  +   T IT    A   +  +E++  +   GI+    +   L+ 
Sbjct: 357 ATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIR 416

Query: 440 GLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 479
           G R +G ++      +EM++  +    +T+  +    +++
Sbjct: 417 GFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSK 456



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/334 (21%), Positives = 139/334 (41%), Gaps = 14/334 (4%)

Query: 97  SAVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASI 153
           SA++  R       + P    ++ ++D L K+GR     N    M++ G+   + T++ +
Sbjct: 134 SALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCM 193

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV 213
            + +C +GK+ EA      M +  +  DVV  + L++A+ ++ +  S        +   V
Sbjct: 194 INGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGV 253

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEM---------VERFEWNPEHVLAYETFLITL 264
            P+  +   LL+G    G +++A + F  M            F      V  Y   +  L
Sbjct: 254 CPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGL 313

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
           I   +  EA +    M      P    +S+ ++ L K +    A Q++D M    F+  P
Sbjct: 314 INEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFS--P 371

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           N++ +N +I   C    VD+    F +M   G   +++TY  +     K   ++     F
Sbjct: 372 NIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIF 431

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 418
            EMI +   P  +     +T L   +E + A+ +
Sbjct: 432 QEMISSGVYPDTITIRNMLTGLWSKEELKKALAM 465



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 128/285 (44%), Gaps = 11/285 (3%)

Query: 176 HGVE--QDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGN 232
           HG++   D+ + N L+   C   ++   AL    ++ K+   P   +F  LL G   E  
Sbjct: 7   HGLQIPCDIYSFNILIKCFCSC-SKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDR 65

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           V EA   F +M +       +V+ + T +  L R  +V EA+  L  M  +   P    +
Sbjct: 66  VSEALDLFHQMCK------PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITY 119

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
              +D + K+ D+  A+ L   M  +  ++ P++++Y+A+I  L  +    +    F +M
Sbjct: 120 GTIVDGMCKMGDTVSALNLLRKMEELS-HIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEM 178

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
              G FPD +TY+ +      + +  E ++   EM+  +  P  +  +  I  L+   + 
Sbjct: 179 QDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDL 238

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
             A ++   ++ +G+ P   + N LL GL + G+L D     + M
Sbjct: 239 NSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAM 283


>gi|77557056|gb|ABA99852.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 726

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 96/406 (23%), Positives = 177/406 (43%), Gaps = 19/406 (4%)

Query: 65  SDDIESALACTGIIPTPDLVHEVLQL-SYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVD 121
           S  +E+ L     + +P  V  VL+  +      A +FFRWA R  R   +P  ++ M+ 
Sbjct: 76  SPKLEAQLRHLLRVLSPPQVRAVLRAQARGDVRRAFEFFRWADRQWRYRHAPEVFDEMLS 135

Query: 122 VLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQ 180
           +L      +     VR+M   GV      FA +  SY  AGK   A+    +M   G   
Sbjct: 136 LLSNTRLHDPARRVVRLMIRRGVRRGTEQFAQLMLSYSRAGKLRSAMRVLHLMQKDGCAP 195

Query: 181 DV----VAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEE 235
           D+    +AVN L+ A      +  +ALEF  R++++ V+PD  ++  L++G      V +
Sbjct: 196 DISICNMAVNVLVVA-----GRVDKALEFAERMRRVGVEPDVYTYNCLIKGLCGARRVVD 250

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-NCFPTLKFFSN 294
           A +  G M++     P   ++Y T +  L + K+V+E    L+ M+ +   FP    ++ 
Sbjct: 251 AMEMIGVMLQ--NGCPPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNV 308

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
            +  L K   +  A++      G  F +  + + Y+A++   C N  +        +M+ 
Sbjct: 309 LIHGLAKHGHADEALEFLRESEGKRFRV--DEVGYSAIVHSFCLNGRMAEAKEIVGEMIS 366

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 414
            G  PD +TY+ + +   +   + +  K    M KN+ +P  +     +  L    +   
Sbjct: 367 KGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSE 426

Query: 415 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           A E+ N   E    P + + + ++ G R  G+L +      +ML +
Sbjct: 427 AWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQK 472



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 75/370 (20%), Positives = 151/370 (40%), Gaps = 15/370 (4%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV---LSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           +N+++  L K+G  ++    +R  + +G    +    +++I  S+C  G+  EA      
Sbjct: 306 YNVLIHGLAKHGHADEALEFLR--ESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGE 363

Query: 173 MSMHGVEQDVVAVNSLLSAICR--QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
           M   G + DVV  ++++   CR  + +Q  + ++ +   K    P+  +   LL G  K 
Sbjct: 364 MISKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHM--YKNDCKPNTVTHTALLNGLCKV 421

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           G   EA +   +  E + W P  +  Y   +    R  ++ E+   +  M  +  FPT  
Sbjct: 422 GKTSEAWELLNKSEEEW-WTPSDI-TYSVVMHGFRREGKLKESCDVVVQMLQKGFFPTTV 479

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
             +  +  L K      A    +     G  +  N++ +  VI       D+++     D
Sbjct: 480 EINLLIHALCKDRKPAEAKDFMEQCQSKGCTI--NVVNFTTVIHGFSRQGDLESALSLMD 537

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
            M      PD +TY ++ + L K  R+ E      +M+     PTP+   T I    +  
Sbjct: 538 DMYLSNRHPDVVTYTVVVDALGKKGRLKEATGLVEKMLNRGVLPTPVTYRTVIHRYCEKG 597

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 470
             E  + +   +L      ++++ N+++  L   G+L++      ++L    +    T H
Sbjct: 598 NLEDLLNLLEKMLARQ--EMKSAYNQVVEKLCAFGKLNEAYSLLYKILRTASVRDAQTCH 655

Query: 471 KLKKAFYNES 480
            L ++F N  
Sbjct: 656 ILMESFLNRG 665


>gi|449462483|ref|XP_004148970.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 917

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 87/389 (22%), Positives = 168/389 (43%), Gaps = 19/389 (4%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
           ++++D+L K G+  +    + V+ + G +L + T  ++    C   +  +A   F  M  
Sbjct: 532 SVLIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVKGLCMKHRISKATQLFLKMQK 591

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD-------SFAILLEGWE 228
            G   +VV   +L+  +C Q      ALE    +     P G        S++I+++G  
Sbjct: 592 LGCMPNVVTCATLMKGLC-QSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLC 650

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           K G  +EA + F EM +     P+ V++Y + +    R  +  +A      M      P 
Sbjct: 651 KCGREDEARELFKEM-KALGVIPD-VISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPD 708

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
           +  FS  +D+L K      A +L ++M+  G   +PN + Y  ++  LC ND +    + 
Sbjct: 709 VTTFSVLIDMLCKEGKVIEANELLEVMIQRG--CIPNTVTYTTLVKGLCMNDRISEATQL 766

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ------PTPLNCATA 402
           F +M   G  PD +TY  + + L +   +    +   +M+ +  Q      P  ++ +  
Sbjct: 767 FMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSII 826

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
           I  L      + A E++  +   G++P   S   L+ G    G+L D +    EM+++ +
Sbjct: 827 IDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGV 886

Query: 463 LIYEVTMHKLKKAFYNESRSMRDIFDSLE 491
            +  VT   +   F  E +  + +F  +E
Sbjct: 887 QLNAVTYSVMIHGFCKEGQIDKALFQKME 915



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/373 (22%), Positives = 154/373 (41%), Gaps = 16/373 (4%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
            +++D+  K G+  +    + VM   G +L + T++++    C   +  EA   F  M  
Sbjct: 239 GVLIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKK 298

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRAL----EFLNRVK----KIVDPDGDSFAILLEGW 227
            G   D +A  +L+  +C Q  + + AL    E LN       K + PD  + ++L++  
Sbjct: 299 LGCRPDAIAYGTLMKGLC-QTGKINIALHLHQEMLNDTSQYGIKCIRPDVTTSSMLIDIL 357

Query: 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
            KEG V EAN+    M++R       ++ Y T +  L    ++ EA      M+   C P
Sbjct: 358 CKEGKVIEANELLEVMIQR--GCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRP 415

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMVG----IGFNLMPNLIMYNAVIGLLCNNDDVD 343
               +   +  L +  +   A+QL   M+      G    P LI Y+ +I  LC +   D
Sbjct: 416 DAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRRED 475

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
                F++M   G  PD ++Y  +      + +  + +  F+EM+    QP     +  I
Sbjct: 476 EARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLI 535

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
            ML    +   A ++   +++ G +    +   L+ GL    R+S   +   +M     +
Sbjct: 536 DMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCM 595

Query: 464 IYEVTMHKLKKAF 476
              VT   L K  
Sbjct: 596 PNVVTCATLMKGL 608



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 82/367 (22%), Positives = 171/367 (46%), Gaps = 18/367 (4%)

Query: 105 AGR-GQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGA 160
            GR G +  P   ++++++D L K+ R ++       MK  G++  + ++ ++   +C +
Sbjct: 447 TGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLS 506

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN--QTSRALEFLNRVKKIVDPDGD 218
           GK+++A   F+ M   G++ DV   + L+  +C++    + ++ LE + +   I+D    
Sbjct: 507 GKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCILDVV-- 564

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           +   L++G   +  + +A + F +M ++    P +V+   T +  L +   +  AL+  +
Sbjct: 565 TCTTLVKGLCMKHRISKATQLFLKM-QKLGCMP-NVVTCATLMKGLCQSGNIKIALELHK 622

Query: 279 VM------KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAV 332
            M       G NC P    +S  +D L K      A +L+  M  +G  ++P++I Y ++
Sbjct: 623 NMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALG--VIPDVISYTSL 680

Query: 333 IGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 392
           I   C +    +    F++MV  G  PD  T++++ + L K  +V E  +    MI+   
Sbjct: 681 IHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGC 740

Query: 393 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 452
            P  +   T +  L   D    A +++  + + G LP   +   L+ GL   G +     
Sbjct: 741 IPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALE 800

Query: 453 FAEEMLN 459
             ++ML+
Sbjct: 801 LHKKMLS 807



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 139/335 (41%), Gaps = 6/335 (1%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           +L +++ I D  C   + DEA   F+ M   G+  DV++  +L+   C           F
Sbjct: 457 TLISYSIIIDGLCKDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLF 516

Query: 206 LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
              +   + PD  + ++L++   K+G V EANK    +++R       V+   T +  L 
Sbjct: 517 NEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQR--GCILDVVTCTTLVKGLC 574

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG----IGFN 321
              ++ +A +    M+   C P +   +  +  L +  +   A++L   M+      G N
Sbjct: 575 MKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGIN 634

Query: 322 LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 381
             PN I Y+ +I  LC     D     F +M   G  PD ++Y  +     ++ +  + +
Sbjct: 635 CKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAK 694

Query: 382 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 441
             F+EM+    QP     +  I ML    +   A E+   +++ G +P   +   L+ GL
Sbjct: 695 YLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGL 754

Query: 442 RNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
               R+S+  +   +M     L   VT   L K  
Sbjct: 755 CMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGL 789



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 80/389 (20%), Positives = 159/389 (40%), Gaps = 23/389 (5%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL----------SLPTFASIFDSYCGAGKY 163
           + +N++++ L    R  +   A+  +   G +           + T + + D  C  GK 
Sbjct: 11  FTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSMLIDILCKEGKV 70

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
            EA    +VM   G   D+V  ++L+  +C +   +     F++  K    PD  ++  L
Sbjct: 71  IEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYGTL 130

Query: 224 LEGWEKEGNVEEANKTFGEMVE---RFEWNPEHVL-AYETFLITLIRGKQVDEALKFLRV 279
           ++G  + GN+  A +   EM+    R+    +  L +Y   +  L + ++ DEA +  + 
Sbjct: 131 MKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKE 190

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
           MK +   P +  +++ +           A  L++ M+ +G    P++     +I + C  
Sbjct: 191 MKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQ--PDVTTSGVLIDMFCKE 248

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
             V       + MV  G   D +TY+ + + L    R+ E  + F  M K   +P  +  
Sbjct: 249 GKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAY 308

Query: 400 ATAITMLLDADEPEIAIEIWNYILENG-------ILPLEASANELLVGLRNLGRLSDVRR 452
            T +  L    +  IA+ +   +L +        I P   +++ L+  L   G++ +   
Sbjct: 309 GTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCIRPDVTTSSMLIDILCKEGKVIEANE 368

Query: 453 FAEEMLNRRILIYEVTMHKLKKAFYNESR 481
             E M+ R  ++  VT   L K    E R
Sbjct: 369 LLEVMIQRGCILDIVTYSTLIKGLCMEHR 397



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 133/330 (40%), Gaps = 15/330 (4%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           +L +++ I D  C   + DEA   F  M   G+  DV++  SL+   C           F
Sbjct: 164 TLISYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLF 223

Query: 206 LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
              +   + PD  +  +L++ + KEG V EAN+    MV R       ++ Y T +  L 
Sbjct: 224 NEMLDVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHR--GCILDIVTYSTLIKGLC 281

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV------GIG 319
              ++ EA +    MK   C P    +   +  L +      A+ L   M+      GI 
Sbjct: 282 MKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIK 341

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
             + P++   + +I +LC    V       + M+  G   D +TY+ + + L    R+ E
Sbjct: 342 C-IRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISE 400

Query: 380 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN----GI--LPLEAS 433
               F  M K   +P  +   T +  L       IA+++   +L +    GI   P   S
Sbjct: 401 ATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLIS 460

Query: 434 ANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
            + ++ GL    R  + R   EEM  + I+
Sbjct: 461 YSIIIDGLCKDRREDEARELFEEMKAQGIM 490



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 67/298 (22%), Positives = 121/298 (40%), Gaps = 15/298 (5%)

Query: 173 MSMHGVEQDVVAVNSLLSAIC--RQENQTSRALEFLNRVKKIVD-------PDGDSFAIL 223
           M + G+  D    N L++ +C  ++ N+   A+  + R   I D       PD  + ++L
Sbjct: 1   MRLAGLFPDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSML 60

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           ++   KEG V EAN+    M++R       ++ Y T +  L    ++ EA      M+  
Sbjct: 61  IDILCKEGKVIEANELLEVMIQR--GCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKL 118

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG----IGFNLMPNLIMYNAVIGLLCNN 339
            C P    +   +  L +  +   A+QL   M+      G    P LI Y+ +I  LC +
Sbjct: 119 GCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKD 178

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
              D     F +M   G  PD ++Y  +      + +  + +  F+EM+    QP     
Sbjct: 179 RREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTS 238

Query: 400 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
              I M     +   A E+   ++  G +    + + L+ GL    R+S+  +    M
Sbjct: 239 GVLIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSM 296



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 52/90 (57%), Gaps = 2/90 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++++++D L K+GR ++     + MK  GV+ ++ ++ S+   +C +GK ++A   F+ M
Sbjct: 822 SYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEM 881

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRAL 203
              GV+ + V  + ++   C+ E Q  +AL
Sbjct: 882 VDQGVQLNAVTYSVMIHGFCK-EGQIDKAL 910


>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
 gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
          Length = 474

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/316 (21%), Positives = 152/316 (48%), Gaps = 6/316 (1%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+ TF ++ +  C  GK D+ +M +D M + G++ +V   N +++++  +  + + AL F
Sbjct: 131 SIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSL-SKSGKANEALGF 189

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L +++K+   P+  +++ L++G+   G ++EA   F  MV +    P +V  Y + +   
Sbjct: 190 LKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSK-GCTP-NVYTYTSLMNGY 247

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
            + ++++EA++ L     +   P +  F+  +  L +      A QL+  +   G    P
Sbjct: 248 CKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHT--P 305

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           N++ Y  ++  LC + +++  F  F +M      P+ + Y ++ + L K  ++ + ++ F
Sbjct: 306 NIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELF 365

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
             +I    +P        +  L        A +++  + E+G  P + + N ++ G    
Sbjct: 366 SRLIDEGLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQH 425

Query: 445 GRLSDVRRFAEEMLNR 460
              S  R+  EEM+NR
Sbjct: 426 KDPSMARQLVEEMVNR 441



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 78/346 (22%), Positives = 144/346 (41%), Gaps = 47/346 (13%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F+ +F S    G Y+  V     +   G+EQD+ +++ L++  C   ++    L  L+++
Sbjct: 65  FSKLFSSIVRMGHYETVVYLSKEIEFLGIEQDIHSLSILINCFCHL-HRVDFGLSVLSKI 123

Query: 210 KKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
            K+ ++P   +F  LL G   EG +++    + +M+ R    P +V  Y   + +L +  
Sbjct: 124 LKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVR-GLQP-NVYTYNVIINSLSKSG 181

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           + +EAL FL+ M+   C                                     +PN++ 
Sbjct: 182 KANEALGFLKQMEKVGC-------------------------------------VPNVVN 204

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           Y+ +I   C    +D     FD MV  G  P+  TY  +     K +R+ E  +   E +
Sbjct: 205 YSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETL 264

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
           +    P  +   T I+ L  A  P  A +++ YI  +G  P   +   LL GL   G L 
Sbjct: 265 RKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLE 324

Query: 449 DVRRFAEEM----LNRRILIYEVTMHKLKKAFYNESRSMRDIFDSL 490
           +     +EM    +   ++IY + +  L K    + +  +++F  L
Sbjct: 325 EAFALFQEMQRSTVKPNLVIYTILIDSLCKC--GKIKDGKELFSRL 368



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/324 (21%), Positives = 139/324 (42%), Gaps = 46/324 (14%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG + + Y +N++++ L K+G+  +    ++ M++ G + ++  ++++ D YC  G+ DE
Sbjct: 161 RGLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDE 220

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILL 224
           A   FD+M   G   +V    SL++  C+ E +   A++ L+  ++K + PD  +F  ++
Sbjct: 221 ARSVFDLMVSKGCTPNVYTYTSLMNGYCKIE-RIEEAVQLLDETLRKGLVPDIVTFTTII 279

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G  + G    A + F  +      +  +++ Y   L  L +   ++EA    + M+   
Sbjct: 280 SGLCRAGRPLAAQQLFRYICA--HGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRS- 336

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
              T+K                                 PNL++Y  +I  LC    + +
Sbjct: 337 ---TVK---------------------------------PNLVIYTILIDSLCKCGKIKD 360

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA--TA 402
               F +++  G  P+  TY  +   L K   + E  K F +M   E   TP  CA    
Sbjct: 361 GKELFSRLIDEGLKPNVYTYTALVGALCKEGLIIEAHKLFRKM--EEDGCTPDKCAYNVI 418

Query: 403 ITMLLDADEPEIAIEIWNYILENG 426
           I   L   +P +A ++   ++  G
Sbjct: 419 IQGFLQHKDPSMARQLVEEMVNRG 442



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 89/198 (44%), Gaps = 6/198 (3%)

Query: 128 RFEQMWNAVRVMKE---DGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV 183
           + E++  AV+++ E    G++  + TF +I    C AG+   A   F  +  HG   +++
Sbjct: 249 KIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPNIM 308

Query: 184 AVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
               LL  +C+  N       F    +  V P+   + IL++   K G +++  + F  +
Sbjct: 309 TYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRL 368

Query: 244 VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303
           ++  E    +V  Y   +  L +   + EA K  R M+ + C P    ++  +   ++  
Sbjct: 369 ID--EGLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQHK 426

Query: 304 DSTHAVQLWDIMVGIGFN 321
           D + A QL + MV  GF+
Sbjct: 427 DPSMARQLVEEMVNRGFS 444


>gi|110289336|gb|ABG66168.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
          Length = 484

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/392 (20%), Positives = 172/392 (43%), Gaps = 18/392 (4%)

Query: 94  SPSSAVDFFRWAGRG--QRLSP--YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLP 148
           SP++AV  +    R     ++P    + +++      GR +  + A+  V+K+   +   
Sbjct: 68  SPAAAVSRYNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAI 127

Query: 149 TFASIFDSYCGAGKYDEAV-MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN 207
            F  +    C   +  +A+ +    M+  G   +V + N LL  +C  EN++  ALE L 
Sbjct: 128 AFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLC-DENRSQEALELLQ 186

Query: 208 RV---KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
            +        PD  S+  ++ G+ KEG++++A  T+ EM++R      +V+ Y + +  L
Sbjct: 187 MMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGIL--PNVVTYSSIIAAL 244

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
            + + +D+A++ L  M      P  + +++ +           A+     M   G    P
Sbjct: 245 CKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVE--P 302

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           +++ YN+++  LC N       + FD M   G  P+  TY  + +       + E+    
Sbjct: 303 DVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLL 362

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
             M++N   P     +  I       + + A+ +++ + + G+ P   +   ++  L   
Sbjct: 363 DLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKS 422

Query: 445 GRLSDVRRFAEEMLNRRI----LIYEVTMHKL 472
           GR+ D  R+ E+M++ R+    ++Y   +H L
Sbjct: 423 GRVEDAMRYFEQMIDERLSPGNIVYNSLIHSL 454



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 112/244 (45%), Gaps = 5/244 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG   +   ++ ++  L K    ++    +  M ++GV+ +  T+ SI   YC +G+  E
Sbjct: 228 RGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKE 287

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A+     M   GVE DVV  NSL+  +C+    T     F +  K+ + P+  ++  LL+
Sbjct: 288 AIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQ 347

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+  +G + E +     MV R   +P H + +   +    +  +VD+A+     M+ +  
Sbjct: 348 GYATKGALVEMHGLLDLMV-RNGIHPNHYV-FSILICAYAKQGKVDQAMLVFSKMRQQGL 405

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P    +   + IL K      A++ ++ M  I   L P  I+YN++I  LC  D  D  
Sbjct: 406 NPDTVTYGTVIGILCKSGRVEDAMRYFEQM--IDERLSPGNIVYNSLIHSLCIFDKWDKA 463

Query: 346 FRFF 349
             +F
Sbjct: 464 KDYF 467



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 141/316 (44%), Gaps = 18/316 (5%)

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI----VDPDGDS 219
           ++A   FD +   G    +  +N  L+ + R  +  + A+   NR+ +     V P+  +
Sbjct: 36  EDARHVFDELLRRGRGASIYGLNCALADVAR--HSPAAAVSRYNRMARAGADEVTPNLCT 93

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKF-L 277
           + IL+      G ++      G ++++ F  +    +A+   L  L   K+  +A+   L
Sbjct: 94  YGILIGSCCCAGRLDLGFAALGNVIKKGFRVD---AIAFTPLLKGLCADKRTSDAMDIVL 150

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337
           R M    C P +  ++  L  L   N S  A++L  +M   G +  P+++ Y  VI    
Sbjct: 151 RRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFF 210

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
              D+D  +  + +M+  G  P+ +TY+ I   L K + + +  +    M+KN   P   
Sbjct: 211 KEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMP--- 267

Query: 398 NCATAITML---LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 454
           NC T  +++     + +P+ AI     +  +G+ P   + N L+  L   GR ++ R+  
Sbjct: 268 NCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMF 327

Query: 455 EEMLNRRILIYEVTMH 470
           + M  +R L  E+T +
Sbjct: 328 DSM-TKRGLKPEITTY 342


>gi|8843735|dbj|BAA97283.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1274

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 87/381 (22%), Positives = 162/381 (42%), Gaps = 7/381 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N++++VL   G FE+    ++ M++ G   ++ T+ ++   YC  G++  A+   D M
Sbjct: 195 TFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHM 254

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              GV+ DV   N L+  +CR        L   +  K+++ P+  ++  L+ G+  EG V
Sbjct: 255 KSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKV 314

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
             A++   EM+  F  +P HV  +   +   I      EALK   +M+ +   P+   + 
Sbjct: 315 LIASQLLNEMLS-FGLSPNHV-TFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYG 372

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             LD L K  +   A   +  M   G  +    I Y  +I  LC N  +D      ++M 
Sbjct: 373 VLLDGLCKNAEFDLARGFYMRMKRNG--VCVGRITYTGMIDGLCKNGFLDEAVVLLNEMS 430

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G  PD +TY+ +     K  R    ++    + +    P  +  +T I         +
Sbjct: 431 KDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLK 490

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 473
            AI I+  ++  G      + N L+  L   G++++   F   M +  IL   V+   L 
Sbjct: 491 EAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLI 550

Query: 474 KAFYNESRSMR--DIFDSLER 492
             + N    ++   +FD + +
Sbjct: 551 NGYGNSGEGLKAFSVFDEMTK 571



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/362 (21%), Positives = 157/362 (43%), Gaps = 8/362 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCG 159
           F+    +G   S  ++ +++D L KN  F+        MK +GV +   T+  + D  C 
Sbjct: 356 FYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCK 415

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGD 218
            G  DEAV+  + MS  G++ D+V  ++L++  C+   +   A E + R+ ++ + P+G 
Sbjct: 416 NGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKV-GRFKTAKEIVCRIYRVGLSPNGI 474

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
            ++ L+    + G ++EA + +  M+   E +      +   + +L +  +V EA +F+R
Sbjct: 475 IYSTLIYNCCRMGCLKEAIRIYEAMI--LEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMR 532

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            M  +   P    F   ++      +   A  ++D M  +G +  P    Y +++  LC 
Sbjct: 533 CMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHH--PTFFTYGSLLKGLCK 590

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
              +    +F   +    A  D++ YN +   + K+  + +    F EM++    P    
Sbjct: 591 GGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYT 650

Query: 399 CATAITMLLDADEPEIAIEIWNYILENG-ILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
             + I+ L    +  IAI         G +LP +      + G+   G+      F E+M
Sbjct: 651 YTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQM 710

Query: 458 LN 459
            N
Sbjct: 711 DN 712



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/324 (22%), Positives = 135/324 (41%), Gaps = 10/324 (3%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G     + +N++V  L K G+  +    +R M  DG+L +  +F  + + Y  +G+  +A
Sbjct: 503 GHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKA 562

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQEN--QTSRALEFLNRVKKIVDPDGDSFAILL 224
              FD M+  G         SLL  +C+  +  +  + L+ L+ V   VD     +  LL
Sbjct: 563 FSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTV--MYNTLL 620

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE- 283
               K GN+ +A   FGEMV+R      +   Y + +  L R  +   A+ F +  +   
Sbjct: 621 TAMCKSGNLAKAVSLFGEMVQRSILPDSY--TYTSLISGLCRKGKTVIAILFAKEAEARG 678

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
           N  P    ++  +D + K       +   + M  +G    P+++  NA+I        ++
Sbjct: 679 NVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHT--PDIVTTNAMIDGYSRMGKIE 736

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
                  +M      P+  TYN++     K K V      +  +I N   P  L C + +
Sbjct: 737 KTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLV 796

Query: 404 TMLLDADEPEIAIEIWNYILENGI 427
             + +++  EI ++I    +  G+
Sbjct: 797 LGICESNMLEIGLKILKAFICRGV 820



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 94/224 (41%), Gaps = 4/224 (1%)

Query: 149  TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
            TF  +    C  G+ + A     VM+  G+  D    ++++S + R        +     
Sbjct: 826  TFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEM 885

Query: 209  VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
             K+ + P+   +  L+ G  + G+++ A     EM+      P   +A    +  L +  
Sbjct: 886  SKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPN--VAESAMVRALAKCG 943

Query: 269  QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
            + DEA   LR M      PT+  F+  + +  K  +   A++L  +M   G  L  +L+ 
Sbjct: 944  KADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKL--DLVS 1001

Query: 329  YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 372
            YN +I  LC   D+   F  +++M   G   ++ TY  +   L+
Sbjct: 1002 YNVLITGLCAKGDMALAFELYEEMKGDGFLANATTYKALIRGLL 1045



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 103/236 (43%), Gaps = 18/236 (7%)

Query: 264 LIRGKQVDEA---LKFLRVMKGENCF------PTLKFFSN---ALDILVKLNDSTHAVQ- 310
           L+R +  D A   LK L +M G++ F       T +  ++     DIL+++      +Q 
Sbjct: 82  LVRARMYDPARHILKELSLMSGKSSFVFGALMTTYRLCNSNPSVYDILIRVYLREGMIQD 141

Query: 311 ---LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMI 367
              ++ +M   GFN  P++   NA++G +  + +  +V+ F  +M+     PD  T+N++
Sbjct: 142 SLEIFRLMGLYGFN--PSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNIL 199

Query: 368 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 427
              L       +      +M K+ + PT +   T +         + AIE+ +++   G+
Sbjct: 200 INVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGV 259

Query: 428 LPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSM 483
                + N L+  L    R++       +M  R I   EVT + L   F NE + +
Sbjct: 260 DADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVL 315


>gi|224137884|ref|XP_002326464.1| predicted protein [Populus trichocarpa]
 gi|222833786|gb|EEE72263.1| predicted protein [Populus trichocarpa]
          Length = 476

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 91/389 (23%), Positives = 171/389 (43%), Gaps = 16/389 (4%)

Query: 82  DLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM 139
           D++H   + S ++    + FF WAG     R + Y +N    +       + + + +   
Sbjct: 65  DIIH---RWSLNNLQLGLRFFIWAGDQPNYRHNLYIYNKACSLFKIKQNPQVILDLIETY 121

Query: 140 K-EDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198
           K E  V+ + TF  +       G  DEA+M    M    +  D  A N ++ ++C ++  
Sbjct: 122 KLEKCVVCVDTFKVVLRLCKAGGLADEALMVLKKMPEFNIRPDTTAYNVVIRSLC-EKGD 180

Query: 199 TSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
              A + +  +  I + PD  ++  +++G+   G +EEA   F  M     +   +V+AY
Sbjct: 181 VDMAKKLMGEMGLIDLYPDMITYVSMIKGFCDVGRLEEAFALFPVMSVHGCY--PNVVAY 238

Query: 258 ETFLITLIRGKQVDEALKFLRVM--KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
              L  + R   V+ A + L  M  +GE C P +  +++ +    +   +  A+ + ++M
Sbjct: 239 SALLDGICRFGIVERAFELLAEMEKQGEGCCPNVITYTSVIQSFCEQGRTKDALSVLELM 298

Query: 316 VGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 375
              G    PN +  +A I  +C N  + +V+ F +++V  G+      Y+ +  CLIK K
Sbjct: 299 EVRG--CAPNRVTASAWINGICTNGQLQDVYNFIERIVAGGSVSIGDCYSSLVVCLIKIK 356

Query: 376 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL-PLEASA 434
           +V E EK F   + +  +P  L C+  I  +           ++  + + G L  ++   
Sbjct: 357 KVEEAEKTFRRALSSGMKPDSLACSMMIREICSEKRVLDGFCLYEEVEKTGCLSSIDIDI 416

Query: 435 NE-LLVGLRNLGRLSDVRRFAEEMLNRRI 462
              LL GL   G  ++  R A  ML +RI
Sbjct: 417 YSILLAGLCQQGHSAEAARLARSMLEKRI 445


>gi|302763357|ref|XP_002965100.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
 gi|300167333|gb|EFJ33938.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
          Length = 603

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/360 (22%), Positives = 159/360 (44%), Gaps = 21/360 (5%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + + ++VD L K  + E+  +    M   G    +  ++S+ D    AG+ DEA    D+
Sbjct: 199 FTYTVLVDGLCKAHKVERACDVFEEMIRKGYKPDIIAYSSLIDGLSKAGRVDEARKLVDL 258

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG----DSFAILLEGWE 228
           M   G     VA  S+++ +C+      R  E +  ++++         D+++ ++ G+ 
Sbjct: 259 MVARGPPPTAVAYTSIVAGLCK----CGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYI 314

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
             G VE+A     EM +R +  P+  ++Y  F+  L    + +EA K    M  + C P 
Sbjct: 315 GMGKVEKAFAVMEEMADR-DCAPD-TISYTMFIEALYSIGRREEAEKVFETMVEKGCKPD 372

Query: 289 LKFFSNALDILVK---LNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
           +  +   +D   K   +  +TH ++L D        + PN  +Y  ++     +  ++  
Sbjct: 373 MHTYGIIIDNFCKEGSMAAATHVLRLMDKAA-----VKPNRYIYTMIMDGFVKSSRLEEA 427

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI--KNEWQPTPLNCATAI 403
              + +++  G  P ++TYN +   L K K++ E  +   EM   K E +P+ +  +  I
Sbjct: 428 LELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMII 487

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
             L      E A ++   +++NG++P   +   L+  L   G++S      EEML   I 
Sbjct: 488 HGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAGIF 547



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 92/392 (23%), Positives = 169/392 (43%), Gaps = 15/392 (3%)

Query: 96  SSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIF 154
           S A+ FF+ +     +S  ++N+++        FE +   +R MK  G+ S   T   I 
Sbjct: 113 SDALGFFQSSISEPNVS--SFNILLRGFAARDDFEVVNALLREMKSRGITSNGATHGVIL 170

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIV 213
            + C     D+AV  F+ +S +  E  +     L+  +C+  ++  RA + F   ++K  
Sbjct: 171 SALCARRDLDKAVSYFNSVSPNKCEPTLFTYTVLVDGLCKA-HKVERACDVFEEMIRKGY 229

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
            PD  +++ L++G  K G V+EA K    MV R    P   +AY + +  L +  ++ EA
Sbjct: 230 KPDIIAYSSLIDGLSKAGRVDEARKLVDLMVAR--GPPPTAVAYTSIVAGLCKCGRIQEA 287

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
           +K ++ M+     P +  +S  +   + +     A  + + M     +  P+ I Y   I
Sbjct: 288 VKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEKAFAVMEEMA--DRDCAPDTISYTMFI 345

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
             L +    +   + F+ MV  G  PD  TY +I +   K   +         M K   +
Sbjct: 346 EALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVK 405

Query: 394 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 453
           P        +   + +   E A+E++  IL++GILP   + N ++  L  L ++ +    
Sbjct: 406 PNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALEL 465

Query: 454 AEEMLNRR------ILIYEVTMHKLKKAFYNE 479
             EM  R+      I+ Y + +H L K    E
Sbjct: 466 LREMQRRKEELEPSIVTYSMIIHGLGKVGMEE 497



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/345 (21%), Positives = 149/345 (43%), Gaps = 5/345 (1%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYD 164
            RG   +  A+  +V  L K GR ++    ++ M+   +   + T++ I   Y G GK +
Sbjct: 261 ARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVE 320

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
           +A    + M+      D ++    + A+     +      F   V+K   PD  ++ I++
Sbjct: 321 KAFAVMEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIII 380

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           + + KEG++  A      ++++    P   + Y   +   ++  +++EAL+  + +  + 
Sbjct: 381 DNFCKEGSMAAATHVL-RLMDKAAVKPNRYI-YTMIMDGFVKSSRLEEALELYQRILKDG 438

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
             P+   ++  ++ L KL     A++L   M      L P+++ Y+ +I  L      + 
Sbjct: 439 ILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEER 498

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
            F    +M+ +G  PD  TY  + + L    +V    +   EM+K    P      T + 
Sbjct: 499 AFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAGIFPDDHTYGTLVQ 558

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR-NLGRLS 448
           +L  +D  + A ++   ++ NG  P E +   +  G R  L RLS
Sbjct: 559 ILCRSD-VDAAWDLLQEMMRNGHTPNEFTFKAVEKGFRLQLDRLS 602



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 67/307 (21%), Positives = 124/307 (40%), Gaps = 34/307 (11%)

Query: 196 ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER--------- 246
           E++ +R +E L     I++        LLE      + + +  TFG ++ R         
Sbjct: 25  EHEDTRHVESL---LAILEDKASDVQALLERSHAAVSTKLSRDTFGGVLGRLRCTCNALG 81

Query: 247 -FEWNP-----EHVL-AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299
            + W        H L    + L+ L+RG  + +AL F +    E   P +  F+  L   
Sbjct: 82  FYHWAATRPGFSHTLFTRNSLLLALVRGGHLSDALGFFQSSISE---PNVSSFNILLRGF 138

Query: 300 VKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFP 359
              +D      L   M   G  +  N   +  ++  LC   D+D    +F+ +  +   P
Sbjct: 139 AARDDFEVVNALLREMKSRG--ITSNGATHGVILSALCARRDLDKAVSYFNSVSPNKCEP 196

Query: 360 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 419
              TY ++ + L K  +V      F EMI+  ++P  +  ++ I  L  A   + A ++ 
Sbjct: 197 TLFTYTVLVDGLCKAHKVERACDVFEEMIRKGYKPDIIAYSSLIDGLSKAGRVDEARKLV 256

Query: 420 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR----------ILIYEVTM 469
           + ++  G  P   +   ++ GL   GR+ +  +  +EM  RR          I+   + M
Sbjct: 257 DLMVARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGM 316

Query: 470 HKLKKAF 476
            K++KAF
Sbjct: 317 GKVEKAF 323



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 67/322 (20%), Positives = 117/322 (36%), Gaps = 45/322 (13%)

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA 236
           G    +   NSLL A+ R     S AL F      I +P+  SF ILL G+    + E  
Sbjct: 91  GFSHTLFTRNSLLLALVRG-GHLSDALGFFQ--SSISEPNVSSFNILLRGFAARDDFEVV 147

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
           N    EM  R      +   +   L  L   + +D+A+ +   +    C PTL       
Sbjct: 148 NALLREMKSR--GITSNGATHGVILSALCARRDLDKAVSYFNSVSPNKCEPTL------- 198

Query: 297 DILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG 356
                                           Y  ++  LC    V+     F++M+  G
Sbjct: 199 ------------------------------FTYTVLVDGLCKAHKVERACDVFEEMIRKG 228

Query: 357 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 416
             PD + Y+ + + L K  RV E  K    M+     PT +   + +  L      + A+
Sbjct: 229 YKPDIIAYSSLIDGLSKAGRVDEARKLVDLMVARGPPPTAVAYTSIVAGLCKCGRIQEAV 288

Query: 417 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
           +    +    + P   + + ++ G   +G++       EEM +R      ++     +A 
Sbjct: 289 KTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEKAFAVMEEMADRDCAPDTISYTMFIEAL 348

Query: 477 YNESR--SMRDIFDSL-ERRCK 495
           Y+  R      +F+++ E+ CK
Sbjct: 349 YSIGRREEAEKVFETMVEKGCK 370


>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 827

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 128/276 (46%), Gaps = 6/276 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIF-DSYCGAGKYDEAVMSFDVM 173
           ++++++      GRF  M N    M + G++S     +I   ++   G  DEA++ F  M
Sbjct: 374 SYSILLHGYATEGRFADMNNLFHSMADKGIVSNCHCINILISAHAKRGMMDEAMLVFTEM 433

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              GV  +VV  ++L+SA CR         +F   +   ++P+   +  L+ G+   G++
Sbjct: 434 QGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFCMHGDL 493

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF-LRVMKGENCFPTLKFF 292
            +A +   EM+ +    P  V          I G+ +D    F L +  G+   PT+  F
Sbjct: 494 VKAKEFISEMMSKGLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDR--PTIVTF 551

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           ++ +D    +     A  + D MV +G    P+++  N ++   C +  +D+    F +M
Sbjct: 552 NSLIDGYCLVGKMEKAFGVLDAMVSVGIE--PDVVTNNTLVSGYCKSGKIDDGLILFREM 609

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           +     P ++TYN++ + L++  R    +K FHEMI
Sbjct: 610 LHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMI 645



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 97/229 (42%), Gaps = 4/229 (1%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           ++ TF S+ D YC  GK ++A    D M   G+E DVV  N+L+S  C+        + F
Sbjct: 547 TIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILF 606

Query: 206 LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
              + K V P   ++ I+L+G  + G    A K F EM++        +  Y+  L  L 
Sbjct: 607 REMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMID--SGTAVDIDTYKILLKGLC 664

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN 325
           R    DEA+     +   +C   +   +  ++ L K+     A  L+  +   G  L+PN
Sbjct: 665 RNDLTDEAITLFHKLGAMDCKFDITILNTMINALYKVRRREEANDLFAAISTSG--LVPN 722

Query: 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN 374
           +  Y  +I  L     V+     F  M   G  P S   N I   L++ 
Sbjct: 723 VSTYGVMIRNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRMLLQK 771



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 112/502 (22%), Positives = 208/502 (41%), Gaps = 75/502 (14%)

Query: 15  KIIPSSSSTTTSPTSHNPHRPTRPRFPTHLDAPYISSSARI----ICEILAH-------- 62
           +++P  SS TTSP    P R   P+        ++++ AR+     C   AH        
Sbjct: 21  QLLPRRSSATTSP----PLRCWDPQ------VAFVAAIARVRAGTFCTDDAHHLFDELLR 70

Query: 63  -------ASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR---GQRLS 112
                   S +D  +ALA       PD V        + P+  +  F    R   G R++
Sbjct: 71  QGTPVHNRSLNDFLAALA-----RAPDSVS-----CSNGPALVLALFNRICREEAGPRVA 120

Query: 113 PYA---WNLMVDVLGKNGRFEQ----MWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDE 165
           P     + +++D   +  R +     +   +R   + G +   TF       C A + DE
Sbjct: 121 PLTVRTYGILMDCCCRARRPDLGPAFVARLLRAGLKTGTIQATTF---LKCLCHAKRTDE 177

Query: 166 AV-MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK---IVDPDGDSFA 221
           AV +    MS      D ++ N+++ ++C  ++++  AL+ + R+ K      PD  SF 
Sbjct: 178 AVDVLLHRMSELSCVPDAISYNTVIKSLC-GDSRSQEALDMVQRMAKEGGRCSPDVVSFN 236

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            ++ G+ K+G V +A   F EMV++    P+ V  Y + +  L + + +D+A   LR M 
Sbjct: 237 TVIHGFFKQGEVSKACNLFNEMVQK-GVVPD-VGTYNSIVDALCKARAMDKAEFVLRQMV 294

Query: 282 GENCFPTLKFFSNALDILVKLNDSTH---AVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            +   P    + NA  I+   + S H   + +++  M   G  L+P+ + +++ +  LC 
Sbjct: 295 DKGVEPDGVTY-NA--IIHGYSCSGHWKESAKMFRKMTSKG--LIPDTVTFSSFMSSLCK 349

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
           +    +    F  M   G  PD ++Y+++        R  ++   FH M          N
Sbjct: 350 HGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGRFADMNNLFHSMADKGIVS---N 406

Query: 399 CATAITMLLDADEP----EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 454
           C   I +L+ A       + A+ ++  +   G+ P   + + L+     +GRL+D     
Sbjct: 407 CH-CINILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKF 465

Query: 455 EEMLNRRILIYEVTMHKLKKAF 476
            +M++  I       H L   F
Sbjct: 466 SQMISIGIEPNTAVYHSLIHGF 487



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 98/239 (41%), Gaps = 11/239 (4%)

Query: 259 TFLITLIRGKQVDEALK-FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317
           TFL  L   K+ DEA+   L  M   +C P    ++  +  L   + S  A+ +   M  
Sbjct: 164 TFLKCLCHAKRTDEAVDVLLHRMSELSCVPDAISYNTVIKSLCGDSRSQEALDMVQRMAK 223

Query: 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
            G    P+++ +N VI       +V      F++MV  G  PD  TYN I + L K + +
Sbjct: 224 EGGRCSPDVVSFNTVIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCKARAM 283

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 437
            + E    +M+    +P  +     I     +   + + +++  +   G++P   + +  
Sbjct: 284 DKAEFVLRQMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPDTVTFSSF 343

Query: 438 LVGLRNLGRLSDVRRFAEEMLNRR----ILIYEVTMHKLKKAFYNESR--SMRDIFDSL 490
           +  L   GR  D     + M  +     I+ Y + +H     +  E R   M ++F S+
Sbjct: 344 MSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILLH----GYATEGRFADMNNLFHSM 398


>gi|326514834|dbj|BAJ99778.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 609

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/371 (22%), Positives = 154/371 (41%), Gaps = 5/371 (1%)

Query: 109 QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAV 167
            RL    WN ++D   K+G  E    A + M+  GV + +  + ++    C AG+ D A 
Sbjct: 197 HRLDVVGWNALLDGYCKSGDMEAALTAAQRMRTQGVGVDVVGYNTLVAGLCRAGEADAAR 256

Query: 168 MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW 227
              + M   GVE +VV   + ++  CR          +   V+  V PD  + + L++G 
Sbjct: 257 GMLETMKGDGVEPNVVTYTTFIAECCRTNAVDDAFSLYEEMVRMGVLPDVVTLSALVDGL 316

Query: 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
            + G   EA   F EM E+    P HV  Y T + +L + ++  E+   L  +       
Sbjct: 317 CRAGRFSEAYALFREM-EKIGAAPNHV-TYCTLIDSLWKARRGSESHGLLGEVVSRGVVM 374

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFR 347
            L  +++ +D L K         ++     +  N  PN + Y  +I  LC   +VD   +
Sbjct: 375 DLVMYTSLMDWLGKQGKIDEVKDMFH--CALSDNHTPNGVTYTVLIDALCRAGNVDGAEQ 432

Query: 348 FFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 407
              +M      P+ +T++ I   L K   + +   +  +M +    P  +   T +    
Sbjct: 433 MLLEMEDKSVHPNVVTFSSIINGLTKQGLLGKAADYMRKMKERGIDPNVVTYGTVMDGFF 492

Query: 408 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEV 467
              E E A+++++ +L  G+   +   + L+ GLR  G++ +      +M  R +L+  V
Sbjct: 493 KCQEQESALDLYHEMLCEGVEVNKFIVDLLVNGLRKNGKMEEAEALFRDMNKRGMLLDHV 552

Query: 468 TMHKLKKAFYN 478
               L    + 
Sbjct: 553 NYTTLIDGLFK 563



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 100/218 (45%), Gaps = 6/218 (2%)

Query: 173 MSMHGVEQDVVAVNSLLSAICR--QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
           M   GV  D V VN+ L A+CR  Q    +   E + R ++I   D   +  LL+G+ K 
Sbjct: 155 MCKRGVPFDAVTVNTALVALCRDGQVEGAAALAEMMVRGREIHRLDVVGWNALLDGYCKS 214

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           G++E A      M  R +     V+ Y T +  L R  + D A   L  MKG+   P + 
Sbjct: 215 GDMEAALTAAQRM--RTQGVGVDVVGYNTLVAGLCRAGEADAARGMLETMKGDGVEPNVV 272

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
            ++  +    + N    A  L++ MV +G  ++P+++  +A++  LC        +  F 
Sbjct: 273 TYTTFIAECCRTNAVDDAFSLYEEMVRMG--VLPDVVTLSALVDGLCRAGRFSEAYALFR 330

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           +M   GA P+ +TY  + + L K +R  E      E++
Sbjct: 331 EMEKIGAAPNHVTYCTLIDSLWKARRGSESHGLLGEVV 368



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 59/302 (19%), Positives = 121/302 (40%), Gaps = 40/302 (13%)

Query: 119 MVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSFDVMSM 175
           +VD L + GRF + +   R M++ G  + P   T+ ++ DS   A +  E+      +  
Sbjct: 312 LVDGLCRAGRFSEAYALFREMEKIG--AAPNHVTYCTLIDSLWKARRGSESHGLLGEVVS 369

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEE 235
            GV  D+V   SL+  + +Q         F   +     P+G ++ +L++   + GNV+ 
Sbjct: 370 RGVVMDLVMYTSLMDWLGKQGKIDEVKDMFHCALSDNHTPNGVTYTVLIDALCRAGNVDG 429

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
           A +   EM ++   +P +V+ + + +  L +   + +A  ++R MK     P +  +   
Sbjct: 430 AEQMLLEMEDK-SVHP-NVVTFSSIINGLTKQGLLGKAADYMRKMKERGIDPNVVTYGTV 487

Query: 296 LDILVKLNDSTHAVQLWDIMV--GIGFN-------------------------------L 322
           +D   K  +   A+ L+  M+  G+  N                               +
Sbjct: 488 MDGFFKCQEQESALDLYHEMLCEGVEVNKFIVDLLVNGLRKNGKMEEAEALFRDMNKRGM 547

Query: 323 MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
           + + + Y  +I  L    ++   F+   ++      PD++ YN+   CL    +  E E 
Sbjct: 548 LLDHVNYTTLIDGLFKMGNMPAAFKVGQELTERNLSPDAVVYNVFVNCLCMLGKSKEAES 607

Query: 383 FF 384
             
Sbjct: 608 IL 609


>gi|3080374|emb|CAA18631.1| putative protein [Arabidopsis thaliana]
 gi|7268739|emb|CAB78946.1| putative protein [Arabidopsis thaliana]
          Length = 814

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 95/454 (20%), Positives = 184/454 (40%), Gaps = 44/454 (9%)

Query: 67  DIESALACTGIIPTPDLVHEVLQ--LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLG 124
           D+   LA  G+ P+    + +L   +  +      + F    +G     Y +   ++   
Sbjct: 201 DVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCKGVSPDVYLFTTAINAFC 260

Query: 125 KNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV 183
           K G+ E+       M+E GV  ++ TF ++ D     G+YDEA M  + M   G+E  ++
Sbjct: 261 KGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLI 320

Query: 184 AVNSLLSAICR----------------------------------QENQTSRALEFLN-R 208
             + L+  + R                                  +    ++A+E  +  
Sbjct: 321 TYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLM 380

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE-RFEWNPEHVLAYETFLITLIRG 267
           V K +     ++  L++G+ K G  + A +   EM+   F  N     ++ + +  L   
Sbjct: 381 VSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQG---SFTSVICLLCSH 437

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
              D AL+F+  M   N  P     +  +  L K    + A++LW   +  GF  + +  
Sbjct: 438 LMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGF--VVDTR 495

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
             NA++  LC    +D  FR   +++  G   D ++YN +       K++ E   F  EM
Sbjct: 496 TSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEM 555

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
           +K   +P     +  I  L + ++ E AI+ W+    NG+LP   + + ++ G     R 
Sbjct: 556 VKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERT 615

Query: 448 SDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
            + + F +EM+++ +    V  + L +A+    R
Sbjct: 616 EEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGR 649



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 92/394 (23%), Positives = 161/394 (40%), Gaps = 42/394 (10%)

Query: 82  DLVHEVL--QLSYDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRV 138
           DL+ EV   Q   D    A+D F   A +G   S    N+++  L +   F++   A  V
Sbjct: 181 DLLIEVYCTQFKRDGCYLALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDV 240

Query: 139 MKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198
           + +     +  F +  +++C  GK +EAV  F  M   GV  +VV  N+           
Sbjct: 241 VCKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNT----------- 289

Query: 199 TSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYE 258
                                   +++G    G  +EA     +MVER    P  ++ Y 
Sbjct: 290 ------------------------VIDGLGMCGRYDEAFMFKEKMVER-GMEPT-LITYS 323

Query: 259 TFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI 318
             +  L R K++ +A   L+ M  +   P +  ++N +D  ++      A+++ D+MV  
Sbjct: 324 ILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSK 383

Query: 319 GFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVH 378
           G +L  +   YN +I   C N   DN  R   +M+  G   +  ++  +   L  +    
Sbjct: 384 GLSLTSS--TYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFD 441

Query: 379 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 438
              +F  EM+     P      T I+ L    +   A+E+W   L  G +    ++N LL
Sbjct: 442 SALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALL 501

Query: 439 VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
            GL   G+L +  R  +E+L R  ++  V+ + L
Sbjct: 502 HGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTL 535



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 153/361 (42%), Gaps = 58/361 (16%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP------TFASIFDSYCGA 160
           +G  L+   +N ++    KNG   Q  NA R++KE  +LS+       +F S+    C  
Sbjct: 383 KGLSLTSSTYNTLIKGYCKNG---QADNAERLLKE--MLSIGFNVNQGSFTSVICLLCSH 437

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE----FLNRVKKIVDPD 216
             +D A+     M +  +      + +L+S +C+   + S+ALE    FLN+   +VD  
Sbjct: 438 LMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKH-GKHSKALELWFQFLNK-GFVVDTR 495

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
             +   LL G  + G ++EA +   E++ R        ++Y T +      K++DEA  F
Sbjct: 496 TSN--ALLHGLCEAGKLDEAFRIQKEILGR--GCVMDRVSYNTLISGCCGKKKLDEAFMF 551

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLL 336
           L                                   D MV  G  L P+   Y+ +I  L
Sbjct: 552 L-----------------------------------DEMVKRG--LKPDNYTYSILICGL 574

Query: 337 CNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 396
            N + V+   +F+D    +G  PD  TY+++ +   K +R  E ++FF EM+    QP  
Sbjct: 575 FNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNT 634

Query: 397 LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 456
           +     I     +    +A+E+   +   GI P  A+   L+ G+  + R+ + +   EE
Sbjct: 635 VVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEE 694

Query: 457 M 457
           M
Sbjct: 695 M 695



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 110/281 (39%), Gaps = 48/281 (17%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFE---QMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGK 162
           RG +   Y +++++  L    + E   Q W+     K +G+L  + T++ + D  C A +
Sbjct: 558 RGLKPDNYTYSILICGLFNMNKVEEAIQFWDDC---KRNGMLPDVYTYSVMIDGCCKAER 614

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFA 221
            +E    FD M    V+ + V  N L+ A CR   + S ALE    +K K + P+  ++ 
Sbjct: 615 TEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRS-GRLSMALELREDMKHKGISPNSATYT 673

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L++G      VEEA   F EM  R E    +V  Y   +    +  Q+ +    LR M 
Sbjct: 674 SLIKGMSIISRVEEAKLLFEEM--RMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMH 731

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
            +N                                     + PN I Y  +IG    + +
Sbjct: 732 SKN-------------------------------------VHPNKITYTVMIGGYARDGN 754

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
           V    R  ++M   G  PDS+TY       +K   V E  K
Sbjct: 755 VTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEAFK 795



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/204 (19%), Positives = 83/204 (40%), Gaps = 3/204 (1%)

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAV 332
           AL    V+  +  FP+    +  L  LV+ N+     + +D++      + P++ ++   
Sbjct: 199 ALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCK---GVSPDVYLFTTA 255

Query: 333 IGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 392
           I   C    V+   + F +M   G  P+ +T+N + + L    R  E   F  +M++   
Sbjct: 256 INAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGM 315

Query: 393 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 452
           +PT +  +  +  L  A     A  +   + + G  P     N L+      G L+    
Sbjct: 316 EPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIE 375

Query: 453 FAEEMLNRRILIYEVTMHKLKKAF 476
             + M+++ + +   T + L K +
Sbjct: 376 IKDLMVSKGLSLTSSTYNTLIKGY 399


>gi|125548468|gb|EAY94290.1| hypothetical protein OsI_16061 [Oryza sativa Indica Group]
          Length = 586

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 139/346 (40%), Gaps = 47/346 (13%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQM------WNAVRVMKEDGVLSLPTFASIFDSYCGAG 161
           G R+  YA+N ++  L   GR   +      W   RV   D    + +F  +    C  G
Sbjct: 213 GCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPD----VWSFNVVIKGVCRVG 268

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK--IVDPDGDS 219
           +  +A+   + M+  G   D V  N ++  +CR  N+ SR  E L R+++  +  P+  +
Sbjct: 269 QVQKALELVERMNEFGCSPDTVTHNIIVDGLCR-TNEVSRGHEVLRRLQRDGVCMPNVVT 327

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVER------FEWN----------------------- 250
           F  ++ G+ K G +E+A   + +MV          +N                       
Sbjct: 328 FTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMT 387

Query: 251 ----PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
               P  V+ + + +    R  Q+D+AL+    M      P +  FS  +  L K N S 
Sbjct: 388 RLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSD 447

Query: 307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM 366
            A+ L + +  +  ++ P   +YN VI +LC    VD        M   G  PD  TY +
Sbjct: 448 EAICLLNEL-NLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTI 506

Query: 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
           +        R+ E   FFHEM++    P  +     I+ LL A  P
Sbjct: 507 LIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCLLKAGMP 552



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 128/270 (47%), Gaps = 11/270 (4%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVL--SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           N++VD L +     +    +R ++ DGV   ++ TF S+   YC AGK ++A+  ++ M 
Sbjct: 293 NIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMV 352

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNV 233
             G+  + V  N L++   +  +  S A+E   ++ ++   PD  +F+ L++G+ + G +
Sbjct: 353 ASGIMPNTVTYNVLINGYGKVGDLGS-AVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQL 411

Query: 234 EEANKTFGEMVE-RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK-GENCFPTLKF 291
           ++A + + +M + R + N   V  +   + +L +  + DEA+  L  +    +  P    
Sbjct: 412 DDALRIWSDMAQHRIQPN---VYTFSIIIHSLCKQNRSDEAICLLNELNLRPDIAPQAFI 468

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           ++  +D+L K      A  +   M   G    P+   Y  +I   C    +     FF +
Sbjct: 469 YNPVIDVLCKCGKVDEANLIRKGMEEKGCR--PDKYTYTILIIGYCMKSRISEAIMFFHE 526

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVE 381
           MV  G  PDS+T N    CL+K    +EV+
Sbjct: 527 MVEAGCSPDSITVNCFISCLLKAGMPNEVD 556



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 77/361 (21%), Positives = 153/361 (42%), Gaps = 28/361 (7%)

Query: 112 SPYAWNLMVDVLGKNGR-------FEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYD 164
           S ++   ++ VL ++GR       F+QM        +   LS      +  S   A   D
Sbjct: 146 SAHSCQQIIVVLCRSGRQADALQLFDQMTTHYGYSPDARFLSF-----LVSSCTCANLLD 200

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAIL 223
            +       S  G   +  A N L+S++  +         F   ++ ++  PD  SF ++
Sbjct: 201 ASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNVV 260

Query: 224 LEGWEKEGNVEEANKTFGEMVER---FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
           ++G  + G V++A     E+VER   F  +P+ V  +   +  L R  +V    + LR +
Sbjct: 261 IKGVCRVGQVQKAL----ELVERMNEFGCSPDTV-THNIIVDGLCRTNEVSRGHEVLRRL 315

Query: 281 KGEN-CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
           + +  C P +  F++ +    K      A+ +++ MV  G  +MPN + YN +I      
Sbjct: 316 QRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASG--IMPNTVTYNVLINGYGKV 373

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
            D+ +    + QM      PD +T++ + +   +  ++ +  + + +M ++  QP     
Sbjct: 374 GDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTF 433

Query: 400 ATAITMLLDADEPEIAIEIWNYI-LENGILPLEASANELLVGLRNLGRLSD---VRRFAE 455
           +  I  L   +  + AI + N + L   I P     N ++  L   G++ +   +R+  E
Sbjct: 434 SIIIHSLCKQNRSDEAICLLNELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGME 493

Query: 456 E 456
           E
Sbjct: 494 E 494



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 68/329 (20%), Positives = 129/329 (39%), Gaps = 56/329 (17%)

Query: 158 CGAGKYDEAVMSFDVMSMH-GVEQDVVAVNSLLSAICRQENQT-------SRALEFLNRV 209
           C +G+  +A+  FD M+ H G   D   ++ L+S+ C   N         S+A EF  RV
Sbjct: 158 CRSGRQADALQLFDQMTTHYGYSPDARFLSFLVSS-CTCANLLDASATLLSKASEFGCRV 216

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
           +        ++  L+      G V +    F   ++   ++P+ V ++   +  + R  Q
Sbjct: 217 EAY------AYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPD-VWSFNVVIKGVCRVGQ 269

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY 329
           V +AL+ +  M    C P     +  +D L + N+ +   ++   +   G   MPN++ +
Sbjct: 270 VQKALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDGV-CMPNVVTF 328

Query: 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389
            +VI   C    +++    ++ MV  G  P+++TYN++     K   +    + + +M  
Sbjct: 329 TSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQM-- 386

Query: 390 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 449
                T L C                             P   + + L+ G    G+L D
Sbjct: 387 -----TRLRCP----------------------------PDVVTFSSLIDGYCRCGQLDD 413

Query: 450 VRRFAEEMLNRRI----LIYEVTMHKLKK 474
             R   +M   RI      + + +H L K
Sbjct: 414 ALRIWSDMAQHRIQPNVYTFSIIIHSLCK 442



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 50/266 (18%), Positives = 107/266 (40%), Gaps = 5/266 (1%)

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
           + P   S   ++    + G   +A + F +M   + ++P+    + +FL++      + +
Sbjct: 143 ITPSAHSCQQIIVVLCRSGRQADALQLFDQMTTHYGYSPD--ARFLSFLVSSCTCANLLD 200

Query: 273 ALKFLRVMKGE-NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA 331
           A   L     E  C      ++  +  L+        V L++  +       P++  +N 
Sbjct: 201 ASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRV-YSPDVWSFNV 259

Query: 332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
           VI  +C    V       ++M   G  PD++T+N+I + L +   V    +    + ++ 
Sbjct: 260 VIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDG 319

Query: 392 -WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 450
              P  +   + I+    A + E A+ ++N ++ +GI+P   + N L+ G   +G L   
Sbjct: 320 VCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSA 379

Query: 451 RRFAEEMLNRRILIYEVTMHKLKKAF 476
               ++M   R     VT   L   +
Sbjct: 380 VEVYQQMTRLRCPPDVVTFSSLIDGY 405


>gi|115474201|ref|NP_001060699.1| Os07g0688100 [Oryza sativa Japonica Group]
 gi|33146488|dbj|BAC79597.1| membrane-associated salt-inducible protein-like [Oryza sativa
           Japonica Group]
 gi|50509161|dbj|BAD30301.1| membrane-associated salt-inducible protein-like [Oryza sativa
           Japonica Group]
 gi|113612235|dbj|BAF22613.1| Os07g0688100 [Oryza sativa Japonica Group]
 gi|215678726|dbj|BAG95163.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222637719|gb|EEE67851.1| hypothetical protein OsJ_25651 [Oryza sativa Japonica Group]
          Length = 665

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 159/341 (46%), Gaps = 10/341 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWN-AVRVMKEDGVLSLPTFASIFDSYCGAGKYDE 165
           RG +    A   ++  L KN + ++ +  A R++  D  L++  + ++   +  AG  ++
Sbjct: 329 RGLKPDVVACGALIFGLCKNQKVDEAFELASRMLTLDIQLNVSIYNALISGFWRAGSIEK 388

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILL 224
           A  +   M  +G E DVV  N LL+  C     T +A   + +++   V+PD  S+ ILL
Sbjct: 389 AYKTVSFMQRNGCEPDVVTYNILLNHYC-SIGMTDKAENLIRKMEMSGVNPDRYSYNILL 447

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNP-EHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           +G  K     + +K F  + +  E      +++    +    R K+V+ AL   + M  +
Sbjct: 448 KGLCK---AHQLDKAFAFVSDHMEVGGFCDIVSCNILIDAFCRAKKVNSALNLFKEMGYK 504

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
                   +   ++ L  +  S  A +L+D M+     ++PN+ +YN ++  LC      
Sbjct: 505 GIQADAVTYGILINGLFGIGYSNLAEELFDQMLNT--KIVPNVNVYNIMLHNLCKVGHFK 562

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
           +  + F QM      PD++T+N +   L K+ R  E    F EM     +P  L     I
Sbjct: 563 HAQKIFWQMTQKEVSPDTVTFNTLIYWLGKSSRAVEALDLFKEMRTKGVEPDNLTFRYII 622

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
           + LLD  +  +A EIW Y++ENGI+ L+   +E L+ +  L
Sbjct: 623 SGLLDEGKATLAYEIWEYMMENGII-LDRDVSERLISVLKL 662



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 85/394 (21%), Positives = 163/394 (41%), Gaps = 13/394 (3%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTF--ASIFDSY-CGAGK 162
            +G  L+P+ ++  +  L ++ R E +   +  M + G    P F   +I+  Y CG  +
Sbjct: 223 AKGFCLTPFTYSRWITALCQSNRIELVEELLTDMDKFG--CFPDFWACNIYVHYLCGHNR 280

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
             +A+   + M+M G   DVV   +++S +C     +     +   V++ + PD  +   
Sbjct: 281 LYDALQMVEKMTMKGTGPDVVTYTTVVSCLCDHRRFSEAVGLWEEMVRRGLKPDVVACGA 340

Query: 223 LLEGWEKEGNVEEANKTFGEMVE-RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           L+ G  K   V+EA +    M+    + N   V  Y   +    R   +++A K +  M+
Sbjct: 341 LIFGLCKNQKVDEAFELASRMLTLDIQLN---VSIYNALISGFWRAGSIEKAYKTVSFMQ 397

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
              C P +  ++  L+    +  +  A  L   M   G N  P+   YN ++  LC    
Sbjct: 398 RNGCEPDVVTYNILLNHYCSIGMTDKAENLIRKMEMSGVN--PDRYSYNILLKGLCKAHQ 455

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
           +D  F F    +  G F D ++ N++ +   + K+V+     F EM     Q   +    
Sbjct: 456 LDKAFAFVSDHMEVGGFCDIVSCNILIDAFCRAKKVNSALNLFKEMGYKGIQADAVTYGI 515

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461
            I  L       +A E+++ +L   I+P     N +L  L  +G     ++   +M  + 
Sbjct: 516 LINGLFGIGYSNLAEELFDQMLNTKIVPNVNVYNIMLHNLCKVGHFKHAQKIFWQMTQKE 575

Query: 462 ILIYEVTMHKLKKAFYNESRSMR--DIFDSLERR 493
           +    VT + L       SR++   D+F  +  +
Sbjct: 576 VSPDTVTFNTLIYWLGKSSRAVEALDLFKEMRTK 609



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 101/245 (41%), Gaps = 5/245 (2%)

Query: 204 EFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI 262
           EFL RV+ + V      + +LL G+ + G  +   +TF EMV       E  + Y  F+ 
Sbjct: 146 EFLGRVRSQGVAFHRSLYRVLLAGYARAGKFDSVIETFDEMVT--SGCREFGVDYNRFIG 203

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL 322
            +I+    D   K+  +   +    T   +S  +  L + N      +L   M    F  
Sbjct: 204 VMIKNCCFDLVEKYYNMALAKGFCLTPFTYSRWITALCQSNRIELVEELLTDM--DKFGC 261

Query: 323 MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
            P+    N  +  LC ++ + +  +  ++M   G  PD +TY  +  CL  ++R  E   
Sbjct: 262 FPDFWACNIYVHYLCGHNRLYDALQMVEKMTMKGTGPDVVTYTTVVSCLCDHRRFSEAVG 321

Query: 383 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 442
            + EM++   +P  + C   I  L    + + A E+ + +L   I    +  N L+ G  
Sbjct: 322 LWEEMVRRGLKPDVVACGALIFGLCKNQKVDEAFELASRMLTLDIQLNVSIYNALISGFW 381

Query: 443 NLGRL 447
             G +
Sbjct: 382 RAGSI 386



 Score = 42.0 bits (97), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 55/130 (42%)

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
           +Y  ++         D+V   FD+MV  G     + YN     +IKN     VEK+++  
Sbjct: 162 LYRVLLAGYARAGKFDSVIETFDEMVTSGCREFGVDYNRFIGVMIKNCCFDLVEKYYNMA 221

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
           +   +  TP   +  IT L  ++  E+  E+   + + G  P   + N  +  L    RL
Sbjct: 222 LAKGFCLTPFTYSRWITALCQSNRIELVEELLTDMDKFGCFPDFWACNIYVHYLCGHNRL 281

Query: 448 SDVRRFAEEM 457
            D  +  E+M
Sbjct: 282 YDALQMVEKM 291


>gi|255577256|ref|XP_002529510.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531026|gb|EEF32879.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 804

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 112/247 (45%), Gaps = 4/247 (1%)

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
            D+F +L++ + K   +E+A ++F EM++ F+  P+ V  Y T L  ++R + V  AL  
Sbjct: 126 ADAFTVLIQAYAKMDMIEKAVESF-EMMKDFDCKPD-VFTYNTVLHVMVRKEVVLLALGI 183

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLL 336
              M   NC P +  FS  +D + K   + +A+Q++D M      ++PN I Y  +I  L
Sbjct: 184 YNRMLKLNCLPNIATFSILIDGMCKSGKTQNALQMFDEMTQ--RRILPNKITYTIIISGL 241

Query: 337 CNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 396
           C     D  +R F  M  HG  PDS+TYN +     K  RV E         K+ +    
Sbjct: 242 CQAQKADVAYRLFIAMKDHGCIPDSVTYNALLHGFCKLGRVDEALGLLKYFEKDRYVLDK 301

Query: 397 LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 456
              +  I  L  A   E A   +  + E+ I P       ++ GL   G+  D  R   E
Sbjct: 302 QGYSCLIDGLFRARRFEDAQVWYRKMTEHNIKPDVILYTIMMKGLSKAGKFKDALRLLNE 361

Query: 457 MLNRRIL 463
           M  R ++
Sbjct: 362 MTERGLV 368



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 102/474 (21%), Positives = 195/474 (41%), Gaps = 54/474 (11%)

Query: 64  SSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDF--FRWAGRGQRLSPY-AWNLMV 120
           S + IE AL       +P +V  +++   + P+S + F  F WA + +RL  + + N+++
Sbjct: 42  SVNPIEPALESKVPFLSPSIVTYIIK---NPPNSLLGFRFFIWASKFRRLRSWVSHNMII 98

Query: 121 DVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVE 179
           D+L K+  FE  W  ++ +K  G  +S   F  +  +Y      ++AV SF++M     +
Sbjct: 99  DMLIKDNGFELYWQVLKEIKRCGFSISADAFTVLIQAYAKMDMIEKAVESFEMMKDFDCK 158

Query: 180 QDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANK 238
            DV   N++L  + R+E     AL   NR+ K+   P+  +F+IL++G  K G  + A +
Sbjct: 159 PDVFTYNTVLHVMVRKE-VVLLALGIYNRMLKLNCLPNIATFSILIDGMCKSGKTQNALQ 217

Query: 239 TFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDI 298
            F EM +R    P  +  Y   +  L + ++ D A +    MK   C P    ++  L  
Sbjct: 218 MFDEMTQR-RILPNKI-TYTIIISGLCQAQKADVAYRLFIAMKDHGCIPDSVTYNALLHG 275

Query: 299 LVKLNDSTHAVQLWD-------IMVGIGF--------------------------NLMPN 325
             KL     A+ L         ++   G+                          N+ P+
Sbjct: 276 FCKLGRVDEALGLLKYFEKDRYVLDKQGYSCLIDGLFRARRFEDAQVWYRKMTEHNIKPD 335

Query: 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 385
           +I+Y  ++  L       +  R  ++M   G  PD+  YN + +       + E +    
Sbjct: 336 VILYTIMMKGLSKAGKFKDALRLLNEMTERGLVPDTHCYNALIKGYCDLGLLDEAKSLHL 395

Query: 386 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
           E+ KN+   +       I  +  +     A +I+N + ++G  P   + N L+ G    G
Sbjct: 396 EISKNDCFSSACTYTILICGMCRSGLVGDAQQIFNEMEKHGCYPSVVTFNALIDGFCKAG 455

Query: 446 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQM 499
            +             ++L Y++ + +    F   S+    + D+   +    Q+
Sbjct: 456 NIEKA----------QLLFYKMEIGRNPSLFLRLSQGANRVLDTASLQTMVEQL 499



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/332 (20%), Positives = 144/332 (43%), Gaps = 22/332 (6%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N ++    K GR ++    ++  ++D  VL    ++ + D    A ++++A + +  M
Sbjct: 268 TYNALLHGFCKLGRVDEALGLLKYFEKDRYVLDKQGYSCLIDGLFRARRFEDAQVWYRKM 327

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGN 232
           + H ++ DV+    ++  + +   +   AL  LN + ++ + PD   +  L++G+   G 
Sbjct: 328 TEHNIKPDVILYTIMMKGLSKA-GKFKDALRLLNEMTERGLVPDTHCYNALIKGYCDLGL 386

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           ++EA     E+ +   ++      Y   +  + R   V +A +    M+   C+P++  F
Sbjct: 387 LDEAKSLHLEISKNDCFSS--ACTYTILICGMCRSGLVGDAQQIFNEMEKHGCYPSVVTF 444

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM--------------YNAVIGLLCN 338
           +  +D   K  +   A QL    + IG N  P+L +                 ++  LC+
Sbjct: 445 NALIDGFCKAGNIEKA-QLLFYKMEIGRN--PSLFLRLSQGANRVLDTASLQTMVEQLCD 501

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
           +  +   +    Q+   G  P+ +TYN++     K   ++   K F E+      P  + 
Sbjct: 502 SGLILKAYNILMQLTDSGFAPNIITYNILIHGFCKAGNINGAFKLFKELQLKGLSPDSVT 561

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPL 430
             T I  LL A+  E A  + + IL+NG  P+
Sbjct: 562 YGTLINGLLSANREEDAFTVLDQILKNGCTPI 593



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 70/306 (22%), Positives = 124/306 (40%), Gaps = 29/306 (9%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           + +M+  L K G+F+     +  M E G++     + ++   YC  G  DEA      +S
Sbjct: 339 YTIMMKGLSKAGKFKDALRLLNEMTERGLVPDTHCYNALIKGYCDLGLLDEAKSLHLEIS 398

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNV 233
            +           L+  +CR       A +  N ++K    P   +F  L++G+ K GN+
Sbjct: 399 KNDCFSSACTYTILICGMCR-SGLVGDAQQIFNEMEKHGCYPSVVTFNALIDGFCKAGNI 457

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           E+A   F +M      NP       +  + L +G         L+ M  + C   L    
Sbjct: 458 EKAQLLFYKM--EIGRNP-------SLFLRLSQGANRVLDTASLQTMVEQLCDSGLIL-- 506

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
            A +IL++L DS  A               PN+I YN +I   C   +++  F+ F ++ 
Sbjct: 507 KAYNILMQLTDSGFA---------------PNIITYNILIHGFCKAGNINGAFKLFKELQ 551

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G  PDS+TY  +   L+   R  +      +++KN   P      + +T     ++  
Sbjct: 552 LKGLSPDSVTYGTLINGLLSANREEDAFTVLDQILKNGCTPITEVYKSFMTWSCRRNKIT 611

Query: 414 IAIEIW 419
           +A  +W
Sbjct: 612 LAFSLW 617



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 72/321 (22%), Positives = 130/321 (40%), Gaps = 55/321 (17%)

Query: 101 FFRWA-GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYC 158
           F R + G  + L   +   MV+ L  +G   + +N +  + + G   ++ T+  +   +C
Sbjct: 476 FLRLSQGANRVLDTASLQTMVEQLCDSGLILKAYNILMQLTDSGFAPNIITYNILIHGFC 535

Query: 159 GAGKYDEAVMSFDVMSMHGVEQDVVA----VNSLLSA----------------------- 191
            AG  + A   F  + + G+  D V     +N LLSA                       
Sbjct: 536 KAGNINGAFKLFKELQLKGLSPDSVTYGTLINGLLSANREEDAFTVLDQILKNGCTPITE 595

Query: 192 --------ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
                    CR+   T     +L  ++ I   D +    + E +EK G VEEA +   EM
Sbjct: 596 VYKSFMTWSCRRNKITLAFSLWLKYLRSIPGRDSEVLKSVEENFEK-GEVEEAVRGLLEM 654

Query: 244 VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303
              F+ N   +  Y  +LI L +  +++EALK    ++  N   T       +  L+K+ 
Sbjct: 655 --DFKLNDFQLAPYTIWLIGLCQAGRLEEALKIFFTLEEHNVLVTPPSCVKLIYRLLKVG 712

Query: 304 DSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLT 363
           +   A +++   +  G+ LMP +   N ++  L  ++D  N  R FD +    +   SL 
Sbjct: 713 NLDLAAEIFLYTIDKGYMLMPRIC--NRLLKSLLRSEDKRN--RAFDLL----SRMKSLG 764

Query: 364 YNMIFECLIKNKRVHEVEKFF 384
           Y++       +  +H+  KF 
Sbjct: 765 YDL-------DSHLHQTTKFL 778


>gi|218200292|gb|EEC82719.1| hypothetical protein OsI_27404 [Oryza sativa Indica Group]
          Length = 665

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 159/341 (46%), Gaps = 10/341 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWN-AVRVMKEDGVLSLPTFASIFDSYCGAGKYDE 165
           RG +    A   ++  L KN + ++ +  A R++  D  L++  + ++   +  AG  ++
Sbjct: 329 RGLKPDVVACGALIFGLCKNQKVDEAFELASRMLTLDIQLNVSIYNALISGFWRAGSIEK 388

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILL 224
           A  +   M  +G E DVV  N LL+  C     T +A   + +++   V+PD  S+ ILL
Sbjct: 389 AYKTVSFMQRNGCEPDVVTYNILLNHYC-SIGMTDKAENLIRKMEMSGVNPDRYSYNILL 447

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNP-EHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           +G  K     + +K F  + +  E      +++    +    R K+V+ AL   + M  +
Sbjct: 448 KGLCK---AHQLDKAFAFVSDHMEVGGFCDIVSCNILIDAFCRAKKVNSALNLFKEMGYK 504

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
                   +   ++ L  +  S  A +L+D M+     ++PN+ +YN ++  LC      
Sbjct: 505 GIQADAVTYGILINGLFGIGYSNLAEELFDQMLNT--KIVPNVNVYNIMLHNLCKVGHFK 562

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
           +  + F QM      PD++T+N +   L K+ R  E    F EM     +P  L     I
Sbjct: 563 HAQKIFWQMTQKEVSPDTVTFNTLIYWLGKSSRAVEALDLFKEMRTKGVEPDNLTFRYII 622

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
           + LLD  +  +A EIW Y++ENGI+ L+   +E L+ +  L
Sbjct: 623 SGLLDEGKATLAYEIWEYMMENGII-LDRDVSERLISVLKL 662



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 85/394 (21%), Positives = 163/394 (41%), Gaps = 13/394 (3%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTF--ASIFDSY-CGAGK 162
            +G  L+P+ ++  +  L ++ R E +   +  M + G    P F   +I+  Y CG  +
Sbjct: 223 AKGFCLTPFTYSRWITALCQSNRIELVEELLTDMDKFG--CFPDFWACNIYVHYLCGHNR 280

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
             +A+   + M+M G   DVV   +++S +C     +     +   V++ + PD  +   
Sbjct: 281 LYDALQMVEKMTMKGTGPDVVTYTTVVSCLCDHRRFSEAVGLWEEMVRRGLKPDVVACGA 340

Query: 223 LLEGWEKEGNVEEANKTFGEMVE-RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           L+ G  K   V+EA +    M+    + N   V  Y   +    R   +++A K +  M+
Sbjct: 341 LIFGLCKNQKVDEAFELASRMLTLDIQLN---VSIYNALISGFWRAGSIEKAYKTVSFMQ 397

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
              C P +  ++  L+    +  +  A  L   M   G N  P+   YN ++  LC    
Sbjct: 398 RNGCEPDVVTYNILLNHYCSIGMTDKAENLIRKMEMSGVN--PDRYSYNILLKGLCKAHQ 455

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
           +D  F F    +  G F D ++ N++ +   + K+V+     F EM     Q   +    
Sbjct: 456 LDKAFAFVSDHMEVGGFCDIVSCNILIDAFCRAKKVNSALNLFKEMGYKGIQADAVTYGI 515

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461
            I  L       +A E+++ +L   I+P     N +L  L  +G     ++   +M  + 
Sbjct: 516 LINGLFGIGYSNLAEELFDQMLNTKIVPNVNVYNIMLHNLCKVGHFKHAQKIFWQMTQKE 575

Query: 462 ILIYEVTMHKLKKAFYNESRSMR--DIFDSLERR 493
           +    VT + L       SR++   D+F  +  +
Sbjct: 576 VSPDTVTFNTLIYWLGKSSRAVEALDLFKEMRTK 609



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 102/246 (41%), Gaps = 5/246 (2%)

Query: 203 LEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFL 261
           LEFL RV+ + V      + +LL G+ + G  +   +TF EMV       E  + Y  F+
Sbjct: 145 LEFLGRVRSQGVAFHRSLYRVLLAGYARAGKFDSVIETFDEMVT--SGCREFGVDYNRFI 202

Query: 262 ITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFN 321
             +I+    D   K+  +   +    T   +S  +  L + N      +L   M    F 
Sbjct: 203 GVMIKNCCFDLVEKYYNMALAKGFCLTPFTYSRWITALCQSNRIELVEELLTDM--DKFG 260

Query: 322 LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 381
             P+    N  +  LC ++ + +  +  ++M   G  PD +TY  +  CL  ++R  E  
Sbjct: 261 CFPDFWACNIYVHYLCGHNRLYDALQMVEKMTMKGTGPDVVTYTTVVSCLCDHRRFSEAV 320

Query: 382 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 441
             + EM++   +P  + C   I  L    + + A E+ + +L   I    +  N L+ G 
Sbjct: 321 GLWEEMVRRGLKPDVVACGALIFGLCKNQKVDEAFELASRMLTLDIQLNVSIYNALISGF 380

Query: 442 RNLGRL 447
              G +
Sbjct: 381 WRAGSI 386



 Score = 42.0 bits (97), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 55/130 (42%)

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
           +Y  ++         D+V   FD+MV  G     + YN     +IKN     VEK+++  
Sbjct: 162 LYRVLLAGYARAGKFDSVIETFDEMVTSGCREFGVDYNRFIGVMIKNCCFDLVEKYYNMA 221

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
           +   +  TP   +  IT L  ++  E+  E+   + + G  P   + N  +  L    RL
Sbjct: 222 LAKGFCLTPFTYSRWITALCQSNRIELVEELLTDMDKFGCFPDFWACNIYVHYLCGHNRL 281

Query: 448 SDVRRFAEEM 457
            D  +  E+M
Sbjct: 282 YDALQMVEKM 291


>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
          Length = 715

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/378 (20%), Positives = 155/378 (41%), Gaps = 36/378 (9%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF  +   +C  G  + A+   + MS HG   +    N +++ IC+Q  +   A +FLN 
Sbjct: 318 TFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQ-GRVDDAFQFLNN 376

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           +      PD  S+  +L+G  +    E+A +   EMV +    P + + + TF+  L + 
Sbjct: 377 MGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKN--CPPNEVTFNTFICILCQK 434

Query: 268 KQVDEALKFLRVMKGENC-------------FPTLKFFSNALDILVKLNDSTHAVQLWDI 314
             +++A   +  M    C             F       +AL++   +    + +    +
Sbjct: 435 GLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCKPNTITYTTL 494

Query: 315 MVGIG-----------------FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGA 357
           + G+                   +  PN++ +N ++   C    +D      +QM+ HG 
Sbjct: 495 LTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGC 554

Query: 358 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 417
            P+ +TYN + + + K+    E  +  H ++ N   P  +  ++ I +L   D  E AI+
Sbjct: 555 TPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIK 614

Query: 418 IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFY 477
           +++ + + G+ P     N++L+ L           F   M++   +  E+T   L +   
Sbjct: 615 MFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLA 674

Query: 478 NES--RSMRDIFDSLERR 493
           NE   +  RD+   L  R
Sbjct: 675 NEDFLKETRDLLRELCSR 692



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 140/311 (45%), Gaps = 11/311 (3%)

Query: 122 VLGKNGRFEQMWNAVRVMKEDGVLSLP----TFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           VL    R E+  +A  ++KE    + P    TF +     C  G  ++A M  + MS HG
Sbjct: 392 VLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHG 451

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
            E ++V  N+L++  C Q  +   ALE    +     P+  ++  LL G      ++ A 
Sbjct: 452 CEVNIVTYNALVNGFCVQ-GRVDSALELFYSMP--CKPNTITYTTLLTGLCNAERLDAAA 508

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297
           +   EM+++ +  P +V+ +   +    +   +DEA++ +  M    C P L  ++  LD
Sbjct: 509 ELLAEMLQK-DCAP-NVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLD 566

Query: 298 ILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGA 357
            + K  +S  A++L   +V  G +  P+++ Y+++IG+L   D V+   + F  +   G 
Sbjct: 567 GITKDCNSEEALELLHGLVSNGVS--PDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGM 624

Query: 358 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 417
            P ++ YN I   L K         FF  M+ N   P  L   T I  L + D  +   +
Sbjct: 625 RPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRD 684

Query: 418 IWNYILENGIL 428
           +   +   G+L
Sbjct: 685 LLRELCSRGVL 695



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 88/405 (21%), Positives = 161/405 (39%), Gaps = 58/405 (14%)

Query: 96  SSAVDFFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP------ 148
           S A    R A R G  +  +A+N +V       R+ Q+  A R+     + S+P      
Sbjct: 126 SDAARVLRAAERSGTAVDVFAYNTLV---AGYCRYGQLDAARRL-----IASMPVAPDAY 177

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+  I    C  G+  EA+   D M   G +  VV    LL A+C+      +A+E L+ 
Sbjct: 178 TYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTG-FGQAMEVLDE 236

Query: 209 VK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           ++ K   P+  ++ +++ G  +EG V++A + F   +  + + P+ V +Y T L  L   
Sbjct: 237 MRAKGCTPNIVTYNVIINGMCREGRVDDA-REFLNRLSSYGFQPDTV-SYTTVLKGLCAA 294

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
           K+ ++  +    M  +NC                                     MPN +
Sbjct: 295 KRWEDVEELFAEMMEKNC-------------------------------------MPNEV 317

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            ++ ++   C    V+   +  +QM  HG   ++   N++   + K  RV +  +F + M
Sbjct: 318 TFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNM 377

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
                 P  ++  T +  L  A+  E A E+   ++     P E + N  +  L   G +
Sbjct: 378 GSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLI 437

Query: 448 SDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSL 490
                  E+M      +  VT + L   F  + R  S  ++F S+
Sbjct: 438 EQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSM 482



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 121/289 (41%), Gaps = 11/289 (3%)

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQ--ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
           D  +  G   DV     L+  +CR+   +  +R L    R    VD    ++  L+ G+ 
Sbjct: 98  DRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVF--AYNTLVAGYC 155

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           + G ++ A +    M       P+    Y   +  L    +V EAL  L  M    C P+
Sbjct: 156 RYGQLDAARRLIASM----PVAPD-AYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPS 210

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
           +  ++  L+ + K      A+++ D M   G    PN++ YN +I  +C    VD+   F
Sbjct: 211 VVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCT--PNIVTYNVIINGMCREGRVDDAREF 268

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
            +++  +G  PD+++Y  + + L   KR  +VE+ F EM++    P  +     +     
Sbjct: 269 LNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCR 328

Query: 409 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
               E AI++   +  +G        N ++  +   GR+ D  +F   M
Sbjct: 329 GGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNM 377


>gi|326487476|dbj|BAJ89722.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 805

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 127/301 (42%), Gaps = 8/301 (2%)

Query: 98  AVDFFRWA-GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMK--EDGVLSLPTFASIF 154
           A+   RWA   G    P  + ++V  LG+ GR + +   +  M       L +  + ++ 
Sbjct: 131 ALALLRWARAEGAADGPAPFEMVVRALGREGRHDAVCALLDEMPLPPGARLDVRAYTTVL 190

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-V 213
            +    G+Y+ A+  FD +   GV    V  N +L    R      R +  L  ++   V
Sbjct: 191 HALSREGRYERALRLFDELRREGVAPTRVTYNVVLDVYGRMGRSWPRVVALLADMRAAGV 250

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
           +PDG + + ++    ++G V+EA   F ++  R   +   V+ Y   L    +     EA
Sbjct: 251 EPDGFTASTVIAAAGRDGLVDEAVAFFEDLKAR--GHAPCVVTYNALLQVFGKAGNYTEA 308

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
           L+ LR M+   C P    ++       +      A +  D M+G G  L+PN   YN ++
Sbjct: 309 LRVLREMEDAGCKPDAVTYNELAGSYARAGFYQEAAKCIDTMIGKG--LLPNTFTYNTIM 366

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
               N   VD     FD+M  +G  P + TYN++   L K  R   + +   EM ++   
Sbjct: 367 TAYGNAGKVDEALALFDRMKKNGFIPYTNTYNLVLGMLGKKSRFAAMLEMLGEMSRSGCT 426

Query: 394 P 394
           P
Sbjct: 427 P 427



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 65/331 (19%), Positives = 130/331 (39%), Gaps = 55/331 (16%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           WN ++ V GK G    +   +  MK   V L   T+ ++  +Y   G    A   +D M+
Sbjct: 432 WNTLLAVCGKRGMESYVTRVLEGMKSCKVELCRDTYNTLICAYGRCGSRANAFKMYDEMT 491

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNV 233
             G    +   N+LL+ + RQ + T+ A   ++++K +   P+  S+++LL+   K GN 
Sbjct: 492 AAGFAPCLTTYNALLNVLSRQGDWTA-ARSIVSKMKSEGFKPNDMSYSLLLQCHAKGGNA 550

Query: 234 EEANKTFGEMVER--FEWN--PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
                   E +E+  ++ N  P  V+   T +I   + ++++   +  + +K     P L
Sbjct: 551 AGI-----EAIEKEVYQGNIFPSWVI-LRTLVIANFKCRRLEGIERAFQEVKARGHKPDL 604

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFN---------------------------- 321
              ++ L I  K    + A+++++ +  +G +                            
Sbjct: 605 VILNSMLSIYAKNGLYSKAMEMFESIEQLGLSPDLITYNSLMDMYAKSNEPWEAEKILNR 664

Query: 322 --------------LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMI 367
                         L P+++ YN VI   C    +    R   +M+  G  P  +TY+ +
Sbjct: 665 LRSSQSQQQQQQQQLKPDVVSYNTVINGFCKEGLIKEAQRVLSEMIADGVAPCVITYHTL 724

Query: 368 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
                  +   E  +    MI+ + +P  L 
Sbjct: 725 VGGYASREMFAEAREVVGYMIQRKLKPMELT 755



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/242 (21%), Positives = 93/242 (38%), Gaps = 5/242 (2%)

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS-THAVQLW 312
           V AY T L  L R  + + AL+    ++ E   PT   ++  LD+  ++  S    V L 
Sbjct: 183 VRAYTTVLHALSREGRYERALRLFDELRREGVAPTRVTYNVVLDVYGRMGRSWPRVVALL 242

Query: 313 DIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 372
             M   G    P+    + VI     +  VD    FF+ +   G  P  +TYN + +   
Sbjct: 243 ADMRAAGVE--PDGFTASTVIAAAGRDGLVDEAVAFFEDLKARGHAPCVVTYNALLQVFG 300

Query: 373 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 432
           K     E  +   EM     +P  +           A   + A +  + ++  G+LP   
Sbjct: 301 KAGNYTEALRVLREMEDAGCKPDAVTYNELAGSYARAGFYQEAAKCIDTMIGKGLLPNTF 360

Query: 433 SANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSL 490
           + N ++    N G++ +     + M     + Y  T + +      +SR  +M ++   +
Sbjct: 361 TYNTIMTAYGNAGKVDEALALFDRMKKNGFIPYTNTYNLVLGMLGKKSRFAAMLEMLGEM 420

Query: 491 ER 492
            R
Sbjct: 421 SR 422


>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
          Length = 814

 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 89/405 (21%), Positives = 172/405 (42%), Gaps = 43/405 (10%)

Query: 92  YDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPT 149
           Y     A D F   A +GQ  + +++ +M++     G    M +   +M  DG+   + T
Sbjct: 337 YGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYT 396

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F  +  +Y   G  D+A++ F+ M  HGV+ DVV   ++++A+CR         +F   +
Sbjct: 397 FNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMI 456

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
            + V PD  ++  L++G+   G++ +A +   E++                      G  
Sbjct: 457 DQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMN--------------------NGMH 496

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY 329
           +D                 + FFS+ ++ L KL     A  ++D+ V +G  L P  ++Y
Sbjct: 497 LD-----------------IVFFSSIINNLCKLGRVMDAQNIFDLTVNVG--LHPTAVVY 537

Query: 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389
           + ++   C    ++   R FD MV  G  P+ + Y  +     K  R+ E    F EM++
Sbjct: 538 SMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQ 597

Query: 390 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 449
              +P+ +     I  L +A     A   ++ + E+GI   + + N +L GL       +
Sbjct: 598 KGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYNIVLRGLFKNRCFDE 657

Query: 450 VRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLER 492
                +E+    + I  +T++ +    +   R    +D+F S+ R
Sbjct: 658 AIFLFKELRAMNVKINIITLNTMIAGMFQTRRVEEAKDLFASISR 702



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 91/415 (21%), Positives = 177/415 (42%), Gaps = 57/415 (13%)

Query: 94  SPSSAVDFF-RWAGRGQR---LSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LS 146
            P+ AV  F R A R Q    LSP  + + +++D   +  R E        +   G+ ++
Sbjct: 86  GPALAVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVN 145

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMH-----GVEQDVVAVNSLLSAICRQ--ENQT 199
           +     +   +C A + DEA+   D++ +H     G   DV + + LL ++C Q    Q 
Sbjct: 146 IIIANHLLKGFCEAKRTDEAL---DIL-LHRTPELGCVPDVFSYSILLKSLCDQGKSGQA 201

Query: 200 SRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYET 259
              L  +     +  PD  +++ +++G+ KEG+V +A   F EMV+R    P   + Y +
Sbjct: 202 DDLLRMMAEGGAVCSPDVVAYSTVIDGFFKEGDVNKACDLFKEMVQR--GIPPDFVTYSS 259

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG 319
            +  L + + +D+A  FLR M  +   P    ++N +           AV+++  M    
Sbjct: 260 VVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRR-- 317

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVD----------------NVFRF--------------- 348
            +++P+++  + ++G LC    +                 NVF +               
Sbjct: 318 HSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVD 377

Query: 349 ----FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
               FD M+  G  PD  T+N++ +       + +    F+EM  +  +P  +   T I 
Sbjct: 378 MTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIA 437

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
            L    + + A+E +N +++ G+ P + + + L+ G    G L   +    E++N
Sbjct: 438 ALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMN 492



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 122/310 (39%), Gaps = 48/310 (15%)

Query: 190 SAICRQENQTSRALEFLNRVK------KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
           SA CR  +  + A+   NR        +++ P   ++AIL++   +    E A   FG++
Sbjct: 80  SAACR--SGPALAVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQL 137

Query: 244 VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-NCFPTLKFFSNALDILVKL 302
           + R       ++A    L      K+ DEAL  L     E  C P +  +S  L  L   
Sbjct: 138 L-RTGLRVNIIIA-NHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQ 195

Query: 303 NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSL 362
             S  A  L  +M   G    P+++ Y+ VI       DV+     F +MV  G  PD +
Sbjct: 196 GKSGQADDLLRMMAEGGAVCSPDVVAYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFV 255

Query: 363 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 422
           TY+ +   L K + + + E F  +M+                                  
Sbjct: 256 TYSSVVHALCKARAMDKAEAFLRQMV---------------------------------- 281

Query: 423 LENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF--YNES 480
              G+LP   + N L+ G  + G+  +  R  +EM    IL   VT+  L  +   Y + 
Sbjct: 282 -NKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKI 340

Query: 481 RSMRDIFDSL 490
           +  RD+FD++
Sbjct: 341 KEARDVFDTM 350



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 131/332 (39%), Gaps = 40/332 (12%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLN 207
           T+A + D    A + + A+  F  +   G+  +++  N LL   C +  +T  AL+  L+
Sbjct: 113 TYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLKGFC-EAKRTDEALDILLH 171

Query: 208 RVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
           R  ++   PD  S++ILL+    +G   +A+     M E                     
Sbjct: 172 RTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAE--------------------- 210

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNL 326
                          G  C P +  +S  +D   K  D   A  L+  MV  G  + P+ 
Sbjct: 211 --------------GGAVCSPDVVAYSTVIDGFFKEGDVNKACDLFKEMVQRG--IPPDF 254

Query: 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 386
           + Y++V+  LC    +D    F  QMV  G  P++ TYN +        +  E  + F E
Sbjct: 255 VTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKE 314

Query: 387 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 446
           M ++   P  +  +  +  L    + + A ++++ +   G  P   S   +L G    G 
Sbjct: 315 MRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGC 374

Query: 447 LSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 478
           L D+    + ML   I     T + L KA+ N
Sbjct: 375 LVDMTDLFDLMLGDGIAPDIYTFNVLIKAYAN 406



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 58/281 (20%), Positives = 112/281 (39%), Gaps = 5/281 (1%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G  L    ++ +++ L K GR     N   +    G+  +   ++ + D YC  GK ++A
Sbjct: 494 GMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKA 553

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
           +  FD M   G+E + V   +L++  C+          F   ++K + P    + I+++G
Sbjct: 554 LRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDG 613

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
             + G    A   F EM E       +   Y   L  L + +  DEA+   + ++  N  
Sbjct: 614 LFEAGRTVPAKVKFHEMTE--SGIAMNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMNVK 671

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346
             +   +  +  + +      A  L+  +   G  L+P ++ Y+ +I  L     V+   
Sbjct: 672 INIITLNTMIAGMFQTRRVEEAKDLFASISRSG--LVPCVVTYSIMITNLIKEGLVEEAE 729

Query: 347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
             F  M   G  PDS   N +   L+K   +     +  ++
Sbjct: 730 DMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKI 770



 Score = 40.0 bits (92), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 58/271 (21%), Positives = 104/271 (38%), Gaps = 8/271 (2%)

Query: 43  HLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSY---DSPSSAV 99
           HLD  + SS    +C++     + +I       G+ PT  +V+ +L   Y        A+
Sbjct: 496 HLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTA-VVYSMLMDGYCLVGKMEKAL 554

Query: 100 DFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSY 157
             F      G   +   +  +V+   K GR ++  +  R M + G+  S   +  I D  
Sbjct: 555 RVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGL 614

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG 217
             AG+   A + F  M+  G+  +    N +L  + +          F       V  + 
Sbjct: 615 FEAGRTVPAKVKFHEMTESGIAMNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINI 674

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            +   ++ G  +   VEEA   F   + R    P  V+ Y   +  LI+   V+EA    
Sbjct: 675 ITLNTMIAGMFQTRRVEEAKDLFAS-ISRSGLVP-CVVTYSIMITNLIKEGLVEEAEDMF 732

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHA 308
             M+   C P  +  ++ +  L+K N+   A
Sbjct: 733 SSMQNAGCEPDSRLLNHVVRELLKKNEIVRA 763


>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
 gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
          Length = 545

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 82/336 (24%), Positives = 143/336 (42%), Gaps = 7/336 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
            F  + +  C   + DEA    +     G E D V  N  +  +C+ E +   A + L +
Sbjct: 9   AFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAE-RVDDAFQLLKK 67

Query: 209 V-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           + +K   P   ++  L++G  K G ++EA     +MVE+   N   +  Y   +  L + 
Sbjct: 68  MDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEK--GNSPTLKTYTVVIDGLSKA 125

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL--MPN 325
            +V+EA +    M G  C P    ++  +  L K      A  L+        +   +P+
Sbjct: 126 GRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVPD 185

Query: 326 LIMYNAVIGLLCNNDDVDNVFRFFD-QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           ++ Y ++I  LC    +    + FD + V  G  PD++TY  I + L K  RV E  + F
Sbjct: 186 VVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERF 245

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
           HEM    ++P  +  A  I   + A     A  ++  +L++G +    + N +L GL   
Sbjct: 246 HEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKA 305

Query: 445 GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 480
           GR+++       M  R  +   VT   L   F +E 
Sbjct: 306 GRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEG 341



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 85/391 (21%), Positives = 160/391 (40%), Gaps = 21/391 (5%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSF---D 171
           + +++D L K GR E+       M  +G       + ++    C +GK +EA   +   +
Sbjct: 115 YTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEAN 174

Query: 172 VMSMHGVE-QDVVAVNSLLSAICRQENQTSRALEFLN-----RVKKIVDPDGDSFAILLE 225
               H     DVV   SL+  +C+      R LE         V++   PD  ++  +++
Sbjct: 175 ARKHHATAVPDVVTYTSLIDGLCK----AGRILEARQVFDDEAVERGFIPDAVTYTSIID 230

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G  K G VEE  + F EM  R  + P+ V  Y   +   ++ K + +A +  R M     
Sbjct: 231 GLCKLGRVEEGCERFHEMRNR-GYEPDAV-TYAALIDGFMKAKMIPKAHRVYRQMLQSGT 288

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
             +   ++  LD L K      A   +  M   G   +  ++ Y+A++   C+  +V   
Sbjct: 289 VVSTVTYNIILDGLCKAGRVAEAYATFLAMEERG--CVATVVTYSALMDGFCSEGNVSAA 346

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
              F +M+  G  P+ ++YN+I   L +  ++ +   +F ++++    P        +  
Sbjct: 347 VELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHG 406

Query: 406 LLDA-DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 464
           L    D     +E++  ++  G  P   S + L+ G+   G L        EM++R +  
Sbjct: 407 LCQRLDTVSDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVALEIFREMVSRGVAP 466

Query: 465 YEVTMHKLKKAFYNESR--SMRDIFDSLERR 493
             V  + L +      R     ++F  LERR
Sbjct: 467 DVVVFNTLIRWLCIAGRVDEALEVFRELERR 497



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/285 (21%), Positives = 119/285 (41%), Gaps = 41/285 (14%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEA 166
           G  +S   +N+++D L K GR  + +     M+E G V ++ T++++ D +C  G    A
Sbjct: 287 GTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAA 346

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
           V  F  M   G E ++V+ N ++  +CR          F   +++ + PD  +F   L G
Sbjct: 347 VELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHG 406

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
                           + +R +                     V + ++    M  +   
Sbjct: 407 ----------------LCQRLD--------------------TVSDGVELFESMVSQGTS 430

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346
           P L  +S  +D + +      A++++  MV  G  + P+++++N +I  LC    VD   
Sbjct: 431 PNLHSYSILMDGICRAGGLEVALEIFREMVSRG--VAPDVVVFNTLIRWLCIAGRVDEAL 488

Query: 347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF-FHEMIKN 390
             F ++    A PD+ +Y  + + L + +R+ E     FH  ++ 
Sbjct: 489 EVFRELERRSA-PDAWSYWSLLDGLSRCERMEEARLLSFHMKLQG 532



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 65/136 (47%)

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           P+++ +  VI  LC    +D  F   ++ V  G  PD +TYN+  + L K +RV +  + 
Sbjct: 5   PDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQL 64

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
             +M + +  PT +     +  LL A   + A+ +   ++E G  P   +   ++ GL  
Sbjct: 65  LKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSK 124

Query: 444 LGRLSDVRRFAEEMLN 459
            GR+ + RR   +ML 
Sbjct: 125 AGRVEEARRIFVDMLG 140


>gi|116310235|emb|CAH67244.1| OSIGBa0140O07.12 [Oryza sativa Indica Group]
          Length = 581

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 140/346 (40%), Gaps = 47/346 (13%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQM------WNAVRVMKEDGVLSLPTFASIFDSYCGAG 161
           G R+  YA+N ++  L   GR   +      W   R+   D    + +F  +    C  G
Sbjct: 208 GCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRLYSPD----VWSFNVVIKGVCRVG 263

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK--IVDPDGDS 219
           +  +A+   + M+  G   D V  N ++  +CR  N+ SR  E L R+++  +  P+  +
Sbjct: 264 QVQKALELVERMNEFGCSPDTVTHNIIVDGLCR-TNEVSRGHEVLRRLQRDGVCMPNVVT 322

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVER------FEWN----------------------- 250
           F  ++ G+ K G +E+A   + +MV          +N                       
Sbjct: 323 FTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMT 382

Query: 251 ----PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
               P  V+ + + +    R  Q+D+AL+    M      P +  FS  +  L K N S 
Sbjct: 383 RLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSD 442

Query: 307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM 366
            A++L + +  +  ++ P   +YN VI +LC    VD        M   G  PD  TY +
Sbjct: 443 EAIRLLNEL-NLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTI 501

Query: 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
           +        R+ E   FFHEM++    P  +     I+ LL A  P
Sbjct: 502 LIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCLLKAGMP 547



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 129/270 (47%), Gaps = 11/270 (4%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVL--SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           N++VD L +     +    +R ++ DGV   ++ TF S+   YC AGK ++A+  ++ M 
Sbjct: 288 NIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMV 347

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNV 233
             G+  + V  N L++   +  +  S A+E   ++ ++   PD  +F+ L++G+ + G +
Sbjct: 348 ASGIMPNTVTYNVLINGYGKVGDLGS-AVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQL 406

Query: 234 EEANKTFGEMVE-RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK-GENCFPTLKF 291
           ++A + + +M + R + N   V  +   + +L +  + DEA++ L  +    +  P    
Sbjct: 407 DDALRIWSDMAQHRIQPN---VYTFSIIIHSLCKQNRSDEAIRLLNELNLRPDIAPQAFI 463

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           ++  +D+L K      A  +   M   G    P+   Y  +I   C    +     FF +
Sbjct: 464 YNPVIDVLCKCGKVDEANLIRKGMEEKGCR--PDKYTYTILIIGYCMKSRISEAIMFFHE 521

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVE 381
           MV  G  PDS+T N    CL+K    +EV+
Sbjct: 522 MVEAGCSPDSITVNCFISCLLKAGMPNEVD 551



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 77/361 (21%), Positives = 153/361 (42%), Gaps = 28/361 (7%)

Query: 112 SPYAWNLMVDVLGKNGR-------FEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYD 164
           S ++   ++ VL ++GR       F+QM        +   LS      +  S   A   D
Sbjct: 141 SAHSCQQIIVVLCRSGRQADALQLFDQMTTHYGYSPDARFLSF-----LVSSCTCANLLD 195

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAIL 223
            +       S  G   +  A N L+S++  +         F   ++ ++  PD  SF ++
Sbjct: 196 ASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRLYSPDVWSFNVV 255

Query: 224 LEGWEKEGNVEEANKTFGEMVER---FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
           ++G  + G V++A     E+VER   F  +P+ V  +   +  L R  +V    + LR +
Sbjct: 256 IKGVCRVGQVQKAL----ELVERMNEFGCSPDTV-THNIIVDGLCRTNEVSRGHEVLRRL 310

Query: 281 KGEN-CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
           + +  C P +  F++ +    K      A+ +++ MV  G  +MPN + YN +I      
Sbjct: 311 QRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASG--IMPNTVTYNVLINGYGKV 368

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
            D+ +    + QM      PD +T++ + +   +  ++ +  + + +M ++  QP     
Sbjct: 369 GDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTF 428

Query: 400 ATAITMLLDADEPEIAIEIWNYI-LENGILPLEASANELLVGLRNLGRLSD---VRRFAE 455
           +  I  L   +  + AI + N + L   I P     N ++  L   G++ +   +R+  E
Sbjct: 429 SIIIHSLCKQNRSDEAIRLLNELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGME 488

Query: 456 E 456
           E
Sbjct: 489 E 489



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 68/329 (20%), Positives = 129/329 (39%), Gaps = 56/329 (17%)

Query: 158 CGAGKYDEAVMSFDVMSMH-GVEQDVVAVNSLLSAICRQENQT-------SRALEFLNRV 209
           C +G+  +A+  FD M+ H G   D   ++ L+S+ C   N         S+A EF  RV
Sbjct: 153 CRSGRQADALQLFDQMTTHYGYSPDARFLSFLVSS-CTCANLLDASATLLSKASEFGCRV 211

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
                 +  ++  L+      G V +    F   ++   ++P+ V ++   +  + R  Q
Sbjct: 212 ------EAYAYNKLMSSLIGRGRVHDVVALFERWIQDRLYSPD-VWSFNVVIKGVCRVGQ 264

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY 329
           V +AL+ +  M    C P     +  +D L + N+ +   ++   +   G   MPN++ +
Sbjct: 265 VQKALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDGV-CMPNVVTF 323

Query: 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389
            +VI   C    +++    ++ MV  G  P+++TYN++     K   +    + + +M  
Sbjct: 324 TSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQM-- 381

Query: 390 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 449
                T L C                             P   + + L+ G    G+L D
Sbjct: 382 -----TRLRCP----------------------------PDVVTFSSLIDGYCRCGQLDD 408

Query: 450 VRRFAEEMLNRRI----LIYEVTMHKLKK 474
             R   +M   RI      + + +H L K
Sbjct: 409 ALRIWSDMAQHRIQPNVYTFSIIIHSLCK 437



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 50/266 (18%), Positives = 107/266 (40%), Gaps = 5/266 (1%)

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
           + P   S   ++    + G   +A + F +M   + ++P+    + +FL++      + +
Sbjct: 138 ITPSAHSCQQIIVVLCRSGRQADALQLFDQMTTHYGYSPD--ARFLSFLVSSCTCANLLD 195

Query: 273 ALKFLRVMKGE-NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA 331
           A   L     E  C      ++  +  L+        V L++  +       P++  +N 
Sbjct: 196 ASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRL-YSPDVWSFNV 254

Query: 332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
           VI  +C    V       ++M   G  PD++T+N+I + L +   V    +    + ++ 
Sbjct: 255 VIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDG 314

Query: 392 -WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 450
              P  +   + I+    A + E A+ ++N ++ +GI+P   + N L+ G   +G L   
Sbjct: 315 VCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSA 374

Query: 451 RRFAEEMLNRRILIYEVTMHKLKKAF 476
               ++M   R     VT   L   +
Sbjct: 375 VEVYQQMTRLRCPPDVVTFSSLIDGY 400


>gi|356536611|ref|XP_003536830.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 578

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 94/392 (23%), Positives = 167/392 (42%), Gaps = 23/392 (5%)

Query: 83  LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMK 140
           L++ + +     P +AV   +     Q + P    +N +V  L K+G   +       M 
Sbjct: 165 LINGLCKSKIGKPRAAVQLLQKMEERQLVKPNLIMYNTVVHGLCKDGNINEARVLCSKMI 224

Query: 141 EDGVL-SLPTFASIFDSYCGAG----------------KYDEAVMSFDVMSMHGVEQDVV 183
             G+   + T++S+    C AG                K DEA   F+VM   G + D++
Sbjct: 225 VQGIFPDIFTYSSLIYGLCRAGQRKEVTSLLNGFCLNNKVDEARELFNVMIERGEQHDII 284

Query: 184 AVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
             N L++  C           F   V++   PD  ++ IL+ G+     V+EA   F  M
Sbjct: 285 NYNILMNGYCLNNKVGEARKLFHMMVERGEQPDTITYTILMHGYCLIDKVDEARNLFHGM 344

Query: 244 VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303
           +ER    P+ V +Y   +    + ++V EA+  L  M  +N  P +  +++ +D L K  
Sbjct: 345 IER-GLVPD-VWSYNILIKGYCKFERVGEAMNLLEDMFLKNLVPNIITYNSVVDGLCKSG 402

Query: 304 DSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAF-PDSL 362
               A +L D M        P++  YN ++  LC  + V+    FF  ++F  +F P+  
Sbjct: 403 GILDAWKLVDEM-HYCCQPPPDVTTYNILLESLCRIECVEKAIAFFKHLIFERSFAPNVW 461

Query: 363 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 422
           +YN++     KN+R+ E    F+ M      P  +     +  L +  + + AI +   I
Sbjct: 462 SYNILISGCCKNRRLDEAINLFNHMCFKNLVPDIVTYNILLDALFNGQQLDKAIALLVQI 521

Query: 423 LENGILPLEASANELLVGLRNLGRLSDVRRFA 454
           ++ GI P   + N L+ GL   GR    ++ +
Sbjct: 522 VDQGISPNLRTYNILINGLHKGGRPKTAQKIS 553



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 77/377 (20%), Positives = 144/377 (38%), Gaps = 26/377 (6%)

Query: 91  SYDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP- 148
            +DS   AV  F R        S   +  ++  + K   +    +   +M+  GV+    
Sbjct: 31  KFDSIDDAVALFHRMVDMHPLPSIVEFTKILGTIAKMRYYATAIDLYTLMEYKGVVPFTV 90

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF  + + +C  G+ D A      +   G   +VV   +L+   C  +        +   
Sbjct: 91  TFNILINCFCHMGQMDFAFSVMGKILKWGCRPNVVTFTTLMKGFCVNDKMLDALYIYDEM 150

Query: 209 VKKIVDPDGDSFAILLEGWEKE--GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
           V + +  D   +  L+ G  K   G    A +   +M ER    P +++ Y T +  L +
Sbjct: 151 VARRIRFDDVLYGTLINGLCKSKIGKPRAAVQLLQKMEERQLVKP-NLIMYNTVVHGLCK 209

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNL 326
              ++EA      M  +  FP +  +S+ +  L +         L +     GF      
Sbjct: 210 DGNINEARVLCSKMIVQGIFPDIFTYSSLIYGLCRAGQRKEVTSLLN-----GF------ 258

Query: 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 386
                     C N+ VD     F+ M+  G   D + YN++      N +V E  K FH 
Sbjct: 259 ----------CLNNKVDEARELFNVMIERGEQHDIINYNILMNGYCLNNKVGEARKLFHM 308

Query: 387 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 446
           M++   QP  +     +      D+ + A  +++ ++E G++P   S N L+ G     R
Sbjct: 309 MVERGEQPDTITYTILMHGYCLIDKVDEARNLFHGMIERGLVPDVWSYNILIKGYCKFER 368

Query: 447 LSDVRRFAEEMLNRRIL 463
           + +     E+M  + ++
Sbjct: 369 VGEAMNLLEDMFLKNLV 385


>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
          Length = 582

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 88/348 (25%), Positives = 147/348 (42%), Gaps = 43/348 (12%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN- 207
           T++ +    C  G++ EA    + M+ HG+  DVV    L+  +C+ + + + A++ LN 
Sbjct: 140 TYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCK-DGRATHAMDLLNL 198

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            V+K  +P   ++ +LL G  KEG V +A K    M+E+       V+ Y T +  L   
Sbjct: 199 MVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEK--GKKADVVTYNTLMKGLCDK 256

Query: 268 KQVDEALKFLRVM-KGENCF-PTLKFFSNALDILVKLNDSTHAV---------------- 309
            +VDEALK    M   ENC  P +  F+  +  L K    T AV                
Sbjct: 257 GKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLV 316

Query: 310 -------------------QLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
                              +LW  ++ +GF  +PN   Y+ +I   C    ++     F 
Sbjct: 317 TYNMLLGGCLKAGKIKEAMELWKQVLDLGF--VPNSFTYSILIDGFCKMRMLNIAKGLFC 374

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
           +M  HG  P    YN +   L K   + + +  F EM     +P  ++  T I   L A 
Sbjct: 375 EMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAG 434

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
           + +   E+   ++E G+ P   + + L+  L  LG L + +   E M+
Sbjct: 435 DFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMV 482



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 148/343 (43%), Gaps = 5/343 (1%)

Query: 119 MVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           ++D L K+GR ++    +  MK+ G    +  + ++   +C  G  D     FD M   G
Sbjct: 74  LMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKG 133

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVEEA 236
           +  +VV  + L+  +CR   Q   A   LN + +  + PD  ++  L++G  K+G    A
Sbjct: 134 ISANVVTYSCLVHGLCRL-GQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHA 192

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
                 MVE+ E  P +V  Y   L  L +   V +A K LR+M  +     +  ++  +
Sbjct: 193 MDLLNLMVEKGE-EPSNV-TYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLM 250

Query: 297 DILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG 356
             L        A++L++ M      L PN+  +N +IG LC    +    +   +MV  G
Sbjct: 251 KGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKG 310

Query: 357 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 416
           +  + +TYNM+    +K  ++ E  + + +++   + P     +  I          IA 
Sbjct: 311 SCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAK 370

Query: 417 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
            ++  +  +G+ P     N L+  L   G L   +   +EM N
Sbjct: 371 GLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGN 413



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 92/398 (23%), Positives = 175/398 (43%), Gaps = 19/398 (4%)

Query: 98  AVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           A+   R  GR + +SP   ++N +++ L K  + ++    +  M+  G   +  T  ++ 
Sbjct: 17  AMGLIREMGR-KSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLM 75

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD 214
           D  C  G+ DEA+   + M   G + DVV   +L+S  C   N       F   + K + 
Sbjct: 76  DGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGIS 135

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
            +  +++ L+ G  + G  +EAN     M E    +P+ V+ Y   +  L +  +   A+
Sbjct: 136 ANVVTYSCLVHGLCRLGQWKEANTVLNAMAEH-GIHPD-VVTYTGLIDGLCKDGRATHAM 193

Query: 275 KFLRVM--KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAV 332
             L +M  KGE   P+   ++  L  L K      A ++  +M+  G     +++ YN +
Sbjct: 194 DLLNLMVEKGEE--PSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKK--ADVVTYNTL 249

Query: 333 IGLLCNNDDVDNVFRFFDQMVFHGAF--PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 390
           +  LC+   VD   + F+ M  +     P+  T+NM+   L K  R+ +  K   +M+K 
Sbjct: 250 MKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKK 309

Query: 391 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 450
                 +     +   L A + + A+E+W  +L+ G +P   + + L+ G   +  L+  
Sbjct: 310 GSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIA 369

Query: 451 RRFAEEM----LNRRILIYEVTMHKL-KKAFYNESRSM 483
           +    EM    LN  +  Y   M  L K+    +++S+
Sbjct: 370 KGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSL 407



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 137/344 (39%), Gaps = 41/344 (11%)

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR------------------ 194
           +    C  G   EA+     M    V  D+V+ N+L++ +C+                  
Sbjct: 4   VLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAG 63

Query: 195 ----------------QENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEAN 237
                           ++ +   A+E L  +KK   D D   +  L+ G+   GN++   
Sbjct: 64  CFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGK 123

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297
           + F EM+ +      +V+ Y   +  L R  Q  EA   L  M      P +  ++  +D
Sbjct: 124 ELFDEMLGK--GISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLID 181

Query: 298 ILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGA 357
            L K   +THA+ L ++MV  G    P+ + YN ++  LC    V + F+    M+  G 
Sbjct: 182 GLCKDGRATHAMDLLNLMVEKGEE--PSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGK 239

Query: 358 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE--WQPTPLNCATAITMLLDADEPEIA 415
             D +TYN + + L    +V E  K F+ M  NE   +P        I  L        A
Sbjct: 240 KADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKA 299

Query: 416 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
           ++I   +++ G      + N LL G    G++ +     +++L+
Sbjct: 300 VKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLD 343



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 118/260 (45%), Gaps = 4/260 (1%)

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           I+L+G  + G V EA     EM  R   +P+ +++Y T +  L + K++ EA+  L  M+
Sbjct: 3   IVLKGLCRNGGVFEAMGLIREM-GRKSVSPD-IVSYNTLINGLCKAKKLKEAVGLLLEME 60

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
              CFP     +  +D L K      A++L + M   GF+   ++++Y  +I   CNN +
Sbjct: 61  AAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFD--ADVVLYGTLISGFCNNGN 118

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
           +D     FD+M+  G   + +TY+ +   L +  +  E     + M ++   P  +    
Sbjct: 119 LDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTG 178

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461
            I  L        A+++ N ++E G  P   + N LL GL   G + D  +    M+ + 
Sbjct: 179 LIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKG 238

Query: 462 ILIYEVTMHKLKKAFYNESR 481
                VT + L K   ++ +
Sbjct: 239 KKADVVTYNTLMKGLCDKGK 258



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 76/384 (19%), Positives = 151/384 (39%), Gaps = 80/384 (20%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDE 165
           +G+  S   +N+++  L K G     +  +R+M E G  + + T+ ++    C  GK DE
Sbjct: 202 KGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDE 261

Query: 166 AVMSFDVM--SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-------------- 209
           A+  F+ M  + + +E +V   N L+  +C+ E + ++A++   ++              
Sbjct: 262 ALKLFNSMFDNENCLEPNVFTFNMLIGGLCK-EGRLTKAVKIHRKMVKKGSCGNLVTYNM 320

Query: 210 ------------------KKIVD----PDGDSFAILLEGWEKEGNVEEANKTFGEMVERF 247
                             K+++D    P+  +++IL++G+ K   +  A   F EM    
Sbjct: 321 LLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEM-RTH 379

Query: 248 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP-----------TLK------ 290
             NP  +  Y T + +L +   +++A    + M   NC P           TLK      
Sbjct: 380 GLNPA-LFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQF 438

Query: 291 ------------------FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAV 332
                              FS  ++ L KL +   A    + MV  GF   P+ ++Y+++
Sbjct: 439 VKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFT--PDALVYDSL 496

Query: 333 IGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 392
           +  L +  D   +     QM   G   D    + I  CL  + +  +V +      +   
Sbjct: 497 LKGLSSKGDTTEIINLLHQMAAKGTVLDRKIVSTILTCLCHSIQEVDVMELLPTFFQGTS 556

Query: 393 QPTPLNCATAITMLLDADEPEIAI 416
           +   ++C   + M L    P++ +
Sbjct: 557 EGASISC-NELLMQLHQSHPKLQL 579



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 56/147 (38%), Gaps = 4/147 (2%)

Query: 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389
           N V+  LC N  V        +M      PD ++YN +   L K K++ E      EM  
Sbjct: 2   NIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEA 61

Query: 390 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 449
               P  + C T +  L      + A+E+   + + G          L+ G  N G L  
Sbjct: 62  AGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDR 121

Query: 450 VRRFAEEMLNRRI----LIYEVTMHKL 472
            +   +EML + I    + Y   +H L
Sbjct: 122 GKELFDEMLGKGISANVVTYSCLVHGL 148


>gi|297793055|ref|XP_002864412.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310247|gb|EFH40671.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1245

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 85/381 (22%), Positives = 162/381 (42%), Gaps = 7/381 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N++++VL   G F++    ++ M++ G   ++ T+ ++   YC  G++  A+   D M
Sbjct: 195 TFNILINVLCAEGSFKKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHM 254

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
           ++ GV  DV   N L+  +CR        L   +  K+++ P+  ++  LL G+  EG V
Sbjct: 255 NLKGVNADVCTYNMLIHDLCRSNRSAKGYLLLRDMRKRMIHPNEVTYNTLLNGFSNEGKV 314

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
             A +   EM+  F  +P HV  +   +   I      EALK   +M+ +    T   + 
Sbjct: 315 LIARQLLNEMLT-FGLSPNHV-TFNALIDGHISEGNFKEALKMFHMMEAKGLIGTEVSYG 372

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             LD L K  +   A   +  M   G  +    I Y  +I  LC N  +D      ++M 
Sbjct: 373 VLLDGLCKNAEFDLARGFYMRMKRNG--VCVGRITYTGMIDGLCKNGFLDEAVVMLNEMS 430

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G  PD +TY+ +     +  R+   ++    + +    P  +  +T I         +
Sbjct: 431 KDGIDPDIVTYSALINGFCRVGRLKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLK 490

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 473
             I I+  ++  G  P   + N L+  L   G++++   F   M +  IL   V+   L 
Sbjct: 491 ETIRIYEAMILEGNTPDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNAVSFDCLI 550

Query: 474 KAFYNESRSMR--DIFDSLER 492
             + +    ++   +FD + +
Sbjct: 551 NGYGSSGEGLKAFSVFDEMTK 571



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 81/373 (21%), Positives = 157/373 (42%), Gaps = 44/373 (11%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCG 159
           F     +G   +  ++ +++D L KN  F+        MK +GV +   T+  + D  C 
Sbjct: 356 FHMMEAKGLIGTEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCK 415

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGD 218
            G  DEAV+  + MS  G++ D+V  ++L++  CR   +   A E + R+ ++ + P+G 
Sbjct: 416 NGFLDEAVVMLNEMSKDGIDPDIVTYSALINGFCRV-GRLKTAKEIVCRIYRVGLSPNGI 474

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWN-PEHVLAYETFLITLIRGKQVDEALKFL 277
            ++ L+    + G ++E  + +  M+   E N P+H   +   + +L +  +V EA +F+
Sbjct: 475 IYSTLIYNCCRMGCLKETIRIYEAMI--LEGNTPDH-FTFNVLVTSLCKAGKVAEAEEFM 531

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337
           R M  +                                      ++PN + ++ +I    
Sbjct: 532 RCMTSDG-------------------------------------ILPNAVSFDCLINGYG 554

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
           ++ +    F  FD+M   G  P   TY  + + L K   +   EKF   +         +
Sbjct: 555 SSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLIAAEKFLKSLQNVPAAVDTV 614

Query: 398 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
            C T IT +  +   + A+ ++  +++  ILP   +   L+ GL   G+      FA+E 
Sbjct: 615 MCNTLITAMCKSGNLDKAVSLFGEMVQRSILPDSFTYTSLISGLCRKGKTVIAILFAKEA 674

Query: 458 LNRRILIYEVTMH 470
             R  L+    M+
Sbjct: 675 EARGNLVPNKVMY 687



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 133/317 (41%), Gaps = 8/317 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +N++V  L K G+  +    +R M  DG+L +  +F  + + Y  +G+  +A   FD 
Sbjct: 509 FTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNAVSFDCLINGYGSSGEGLKAFSVFDE 568

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEG 231
           M+  G         SLL  +C+  +  + A +FL  ++ +    D      L+    K G
Sbjct: 569 MTKVGHHPTFFTYGSLLKGLCKGGHLIA-AEKFLKSLQNVPAAVDTVMCNTLITAMCKSG 627

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-NCFPTLK 290
           N+++A   FGEMV+R    P+    Y + +  L R  +   A+ F +  +   N  P   
Sbjct: 628 NLDKAVSLFGEMVQR-SILPDS-FTYTSLISGLCRKGKTVIAILFAKEAEARGNLVPNKV 685

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
            ++  +D + K             M  +G  L  +++  NA+I        ++       
Sbjct: 686 MYTCFVDGMFKAGQWKAGFYFRQQMDKLG--LTRDVVTTNAMIDGYSRMGKIEKTHDLLF 743

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
           +M      P+  TYN++     K K V      +  MI +   P  L C + I  + +++
Sbjct: 744 EMGNQNQGPNLTTYNILLHGYSKRKHVSTSFMLYRSMILSGILPDKLTCYSIILGICESN 803

Query: 411 EPEIAIEIWNYILENGI 427
             EI ++I    +  G+
Sbjct: 804 MLEIGLKILKAFICRGV 820



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 93/219 (42%), Gaps = 4/219 (1%)

Query: 149  TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
            TF  +    C  G+ + A    +VM+  G+  D    ++++S + R        +     
Sbjct: 826  TFNMLISKCCANGEINWAFDMVNVMTSLGISLDKNTCDAIVSVLNRNHRFQESRMVLHEM 885

Query: 209  VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
             K+ + P+   +  LL G  + G+++ A     EM+      P   +A    +  L +  
Sbjct: 886  SKQGISPESRKYIGLLNGLCRVGDIKTAFVVKEEMIAHKICPPN--VAESAMVRALAKCG 943

Query: 269  QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
            + DEA   LR M      PT+  F+  + +  K  + T A++L  +M   G  L  +L+ 
Sbjct: 944  KADEASLLLRSMLKMKLVPTIASFTTLMHLFCKNGNVTEALELRVVMSNCGLKL--DLVS 1001

Query: 329  YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMI 367
            YN +I  LC   D+   F  F++M   G   +  TY  +
Sbjct: 1002 YNVLITGLCAKGDMAIAFELFEEMKRDGFLANVTTYKAL 1040



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 59/260 (22%), Positives = 115/260 (44%), Gaps = 23/260 (8%)

Query: 243 MVERFEWNPEHVLAYETFLIT---LIRGKQVDEA---LKFLRVMKGENCF------PTLK 290
           +V++   + +H++  + F IT   L+R +  D A   LK L +M G++ F       T +
Sbjct: 60  VVKQPGLDTDHIV--QLFCITTHILVRARMYDPARHILKELSLMSGKSSFVFGALMATYR 117

Query: 291 FFSN---ALDILVKLNDSTHAVQ----LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
             ++     DIL+++      +Q    ++ +M   GFN  P++   NA++G +  + +  
Sbjct: 118 LCNSNPSVFDILIRVYLREGMIQDSLEIFRLMGLYGFN--PSVYTCNAILGSIVKSCEDV 175

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
           +V+ F  +M+     PD  T+N++   L       +      +M K+ + PT +   T +
Sbjct: 176 SVWSFLKEMLKRKICPDVATFNILINVLCAEGSFKKSSYLMQKMEKSGYAPTIVTYNTVL 235

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
                    + AIE+ +++   G+     + N L+  L    R +       +M  R I 
Sbjct: 236 HWYCKKGRFKAAIELLDHMNLKGVNADVCTYNMLIHDLCRSNRSAKGYLLLRDMRKRMIH 295

Query: 464 IYEVTMHKLKKAFYNESRSM 483
             EVT + L   F NE + +
Sbjct: 296 PNEVTYNTLLNGFSNEGKVL 315


>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 529

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 133/280 (47%), Gaps = 13/280 (4%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N++++ L K G  ++  N + VM ++G+   + T++++ D YC  G+   A   F  
Sbjct: 221 YIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHA 280

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD----PDGDSFAILLEGWE 228
           M   GV  +V + N +++ +C+      R  E +N +++++     PD  ++  L++G  
Sbjct: 281 MVQMGVNPNVYSYNIMINGLCK----CKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLC 336

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           K G +  A     EM  R +  P  V+ Y + L  L + + +D+A      MK     PT
Sbjct: 337 KSGRITSALNLMNEMHHRGQ--PADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPT 394

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
           +  ++  +D L K     +A +L+  ++  G  +  ++  Y  +I  LC     D     
Sbjct: 395 MYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCI--DVWTYTVMISGLCKEGMFDEALAI 452

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
             +M  +G  P+++T+ +I   L +     + EK  HEMI
Sbjct: 453 KSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMI 492



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 144/349 (41%), Gaps = 20/349 (5%)

Query: 122 VLGKNGRFEQMWNAVRVMKEDGVLSL----PTFASIFDSYCGAGKYDEAVMSFDVMSM-- 175
           +LG   + +Q   A+ + K+  V  +     T   + + +C  G   +   SF V+    
Sbjct: 16  ILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLG---QMAFSFSVLGKIL 72

Query: 176 -HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNV 233
             G + D + +N+L+  +C +  +  ++L F ++V  +    D  S+  LL G  K G  
Sbjct: 73  KLGYQPDTITLNTLMKGLCLK-GEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGLCKIGET 131

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
             A K    M+E     P +V+ Y T +  L + K V+EA      M     FP    ++
Sbjct: 132 RCAVKLL-RMIEDRSTRP-NVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYT 189

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +     L     A  L D M  I  N+ P + +YN +I  LC   +V         M 
Sbjct: 190 TLIYGFCLLGQLMGAFSLLDEM--ILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMT 247

Query: 354 FHGAFPDSLTYNMIFE--CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
             G  P  +TY+ + +  CL+    V   ++ FH M++    P   +    I  L     
Sbjct: 248 KEGIKPGVVTYSTLMDGYCLV--GEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKR 305

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
            + A+ +   +L   ++P   + N L+ GL   GR++       EM +R
Sbjct: 306 VDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHR 354



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 72/332 (21%), Positives = 135/332 (40%), Gaps = 41/332 (12%)

Query: 97  SAVDFFRWA-GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
            AV   R    R  R +   +N ++D L K+    + ++    M   G+     T+ ++ 
Sbjct: 133 CAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLI 192

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD 214
             +C  G+   A    D M +  +   V   N L++A+C++ N            K+ + 
Sbjct: 193 YGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIK 252

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           P   +++ L++G+   G V+ A + F  MV+    NP +V +Y   +  L + K+VDEA+
Sbjct: 253 PGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQ-MGVNP-NVYSYNIMINGLCKCKRVDEAM 310

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
             LR M                                     +  N++P+ + YN++I 
Sbjct: 311 NLLREM-------------------------------------LHKNMVPDTVTYNSLID 333

Query: 335 LLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
            LC +  + +     ++M   G   D +TY  + + L KN+ + +    F +M +   QP
Sbjct: 334 GLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQP 393

Query: 395 TPLNCATAITMLLDADEPEIAIEIWNYILENG 426
           T       I  L      + A E++ ++L  G
Sbjct: 394 TMYTYTALIDGLCKGGRLKNAQELFQHLLVKG 425



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 142/333 (42%), Gaps = 6/333 (1%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F  I  S     +Y  A+     M + G+  + V +N L++  C    Q + +   L ++
Sbjct: 13  FNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHL-GQMAFSFSVLGKI 71

Query: 210 KKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
            K+   PD  +   L++G   +G V+++   F + V    +  +HV +Y T L  L +  
Sbjct: 72  LKLGYQPDTITLNTLMKGLCLKGEVKKS-LHFHDKVVAQGFQMDHV-SYGTLLNGLCKIG 129

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           +   A+K LR+++  +  P +  ++  +D L K      A  L+  M   G  + P+ I 
Sbjct: 130 ETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARG--IFPDAIT 187

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           Y  +I   C    +   F   D+M+     P    YN++   L K   V E +     M 
Sbjct: 188 YTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMT 247

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
           K   +P  +  +T +       E + A +I++ +++ G+ P   S N ++ GL    R+ 
Sbjct: 248 KEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVD 307

Query: 449 DVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
           +      EML++ ++   VT + L        R
Sbjct: 308 EAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGR 340



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 95/208 (45%), Gaps = 3/208 (1%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVR-VMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y++N+M++ L K  R ++  N +R ++ ++ V    T+ S+ D  C +G+   A+   + 
Sbjct: 291 YSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNE 350

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M   G   DVV   SLL A+C+ +N       F+   ++ + P   ++  L++G  K G 
Sbjct: 351 MHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGR 410

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           ++ A + F  ++   +     V  Y   +  L +    DEAL     M+   C P    F
Sbjct: 411 LKNAQELFQHLL--VKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTF 468

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGF 320
              +  L + +++  A +L   M+  G 
Sbjct: 469 EIIIRSLFEKDENDKAEKLLHEMIAKGL 496



 Score = 43.5 bits (101), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 67/143 (46%), Gaps = 5/143 (3%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RGQ      +  ++D L KN   ++       MKE G+  ++ T+ ++ D  C  G+   
Sbjct: 354 RGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKN 413

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILL 224
           A   F  + + G   DV     ++S +C+ E     AL   ++++     P+  +F I++
Sbjct: 414 AQELFQHLLVKGCCIDVWTYTVMISGLCK-EGMFDEALAIKSKMEDNGCIPNAVTFEIII 472

Query: 225 EG-WEKEGNVEEANKTFGEMVER 246
              +EK+ N ++A K   EM+ +
Sbjct: 473 RSLFEKDEN-DKAEKLLHEMIAK 494


>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
 gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
 gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
 gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
 gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 729

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/357 (22%), Positives = 165/357 (46%), Gaps = 7/357 (1%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G  ++ Y  N+MV+ L K+G+ E++   +  ++E GV   + T+ ++  +Y   G  +EA
Sbjct: 230 GVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEA 289

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAILLE 225
               + M   G    V   N++++ +C+   +  RA E F   ++  + PD  ++  LL 
Sbjct: 290 FELMNAMPGKGFSPGVYTYNTVINGLCKH-GKYERAKEVFAEMLRSGLSPDSTTYRSLLM 348

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
              K+G+V E  K F +M  R +  P+ ++ + + +    R   +D+AL +   +K    
Sbjct: 349 EACKKGDVVETEKVFSDMRSR-DVVPD-LVCFSSMMSLFTRSGNLDKALMYFNSVKEAGL 406

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P    ++  +    +    + A+ L + M+  G  +  +++ YN ++  LC    +   
Sbjct: 407 IPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAM--DVVTYNTILHGLCKRKMLGEA 464

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
            + F++M     FPDS T  ++ +   K   +    + F +M +   +   +   T +  
Sbjct: 465 DKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDG 524

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
                + + A EIW  ++   ILP   S + L+  L + G L++  R  +EM+++ I
Sbjct: 525 FGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNI 581



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 156/368 (42%), Gaps = 12/368 (3%)

Query: 81  PDLV-HEVLQLSYDSPSSAVDFFRW--AGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNA 135
           PD+V +  L  +Y S     + F    A  G+  SP  Y +N +++ L K+G++E+    
Sbjct: 268 PDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEV 327

Query: 136 VRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194
              M   G+     T+ S+    C  G   E    F  M    V  D+V  +S++S   R
Sbjct: 328 FAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTR 387

Query: 195 QENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH 253
             N   +AL + N VK+  + PD   + IL++G+ ++G +  A     EM++  +     
Sbjct: 388 SGN-LDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQ--QGCAMD 444

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
           V+ Y T L  L + K + EA K    M     FP     +  +D   KL +  +A++L+ 
Sbjct: 445 VVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQ 504

Query: 314 IMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 373
            M      L  +++ YN ++       D+D     +  MV     P  ++Y+++   L  
Sbjct: 505 KMKEKRIRL--DVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCS 562

Query: 374 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 433
              + E  + + EMI    +PT + C + I     +            ++  G +P   S
Sbjct: 563 KGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCIS 622

Query: 434 ANELLVGL 441
            N L+ G 
Sbjct: 623 YNTLIYGF 630



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 73/346 (21%), Positives = 152/346 (43%), Gaps = 9/346 (2%)

Query: 119 MVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIF-DSYCGAGKYDEAVMSFDVMSMHG 177
           M+ +  ++G  ++       +KE G++      +I    YC  G    A+   + M   G
Sbjct: 381 MMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQG 440

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
              DVV  N++L  +C+++        F    ++ + PD  +  IL++G  K GN++ A 
Sbjct: 441 CAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAM 500

Query: 238 KTFGEMVE-RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
           + F +M E R   +   V+ Y T L    +   +D A +    M  +   PT   +S  +
Sbjct: 501 ELFQKMKEKRIRLD---VVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILV 557

Query: 297 DILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG 356
           + L        A ++WD M  I  N+ P +++ N++I   C + +  +   F ++M+  G
Sbjct: 558 NALCSKGHLAEAFRVWDEM--ISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEG 615

Query: 357 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP--LNCATAITMLLDADEPEI 414
             PD ++YN +    ++ + + +      +M + +    P      + +      ++ + 
Sbjct: 616 FVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKE 675

Query: 415 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           A  +   ++E G+ P  ++   ++ G  +   L++  R  +EML R
Sbjct: 676 AEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQR 721



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 80/378 (21%), Positives = 147/378 (38%), Gaps = 61/378 (16%)

Query: 119 MVDVLGKNGRFEQMWNAV-RVMKEDGVLSL-------PTFA------SIFD----SYCGA 160
           M+ +L ++GR     + + R+++  GV  L        TF+      S+FD    +Y  A
Sbjct: 119 MIHILVRSGRLSDAQSCLLRMIRRSGVSRLEIVNSLDSTFSNCGSNDSVFDLLIRTYVQA 178

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSF 220
            K  EA  +F ++   G    + A N+L+ ++ R                          
Sbjct: 179 RKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRI------------------------- 213

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
                GW     VE A   + E+         +V      +  L +  ++++   FL  +
Sbjct: 214 -----GW-----VELAWGVYQEISR--SGVGINVYTLNIMVNALCKDGKMEKVGTFLSQV 261

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
           + +  +P +  ++  +           A +L + M G GF+  P +  YN VI  LC + 
Sbjct: 262 QEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFS--PGVYTYNTVINGLCKHG 319

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
             +     F +M+  G  PDS TY  +     K   V E EK F +M   +  P  +  +
Sbjct: 320 KYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFS 379

Query: 401 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           + +++   +   + A+  +N + E G++P       L+ G    G +S       EML +
Sbjct: 380 SMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQ 439

Query: 461 R----ILIYEVTMHKLKK 474
                ++ Y   +H L K
Sbjct: 440 GCAMDVVTYNTILHGLCK 457



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/246 (20%), Positives = 99/246 (40%), Gaps = 2/246 (0%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T   + D +C  G    A+  F  M    +  DVV  N+LL    +  +  +    + + 
Sbjct: 482 TLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADM 541

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           V K + P   S++IL+     +G++ EA + + EM+ +    P  V+   + +    R  
Sbjct: 542 VSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISK-NIKPT-VMICNSMIKGYCRSG 599

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
              +   FL  M  E   P    ++  +   V+  + + A  L   M      L+P++  
Sbjct: 600 NASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFT 659

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           YN+++   C  + +        +M+  G  PD  TY  +    +    + E  +   EM+
Sbjct: 660 YNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEML 719

Query: 389 KNEWQP 394
           +  + P
Sbjct: 720 QRGFSP 725



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 101/256 (39%), Gaps = 46/256 (17%)

Query: 110 RLSPYAWNLMVDVLGKNGRFE---QMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDE 165
           RL    +N ++D  GK G  +   ++W A  V KE  +L  P +++ + ++ C  G   E
Sbjct: 512 RLDVVTYNTLLDGFGKVGDIDTAKEIW-ADMVSKE--ILPTPISYSILVNALCSKGHLAE 568

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILL 224
           A   +D M    ++  V+  NS++   CR  N  S    FL + + +   PD  S+  L+
Sbjct: 569 AFRVWDEMISKNIKPTVMICNSMIKGYCRSGN-ASDGESFLEKMISEGFVPDCISYNTLI 627

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G+ +E N+ +A     +M E        V  Y + L    R  Q+ EA   LR M    
Sbjct: 628 YGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKM---- 683

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
                                          +  G N  P+   Y  +I    + D++  
Sbjct: 684 -------------------------------IERGVN--PDRSTYTCMINGFVSQDNLTE 710

Query: 345 VFRFFDQMVFHGAFPD 360
            FR  D+M+  G  PD
Sbjct: 711 AFRIHDEMLQRGFSPD 726


>gi|359487106|ref|XP_002274114.2| PREDICTED: pentatricopeptide repeat-containing protein At1g80550,
           mitochondrial-like [Vitis vinifera]
          Length = 571

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 90/383 (23%), Positives = 169/383 (44%), Gaps = 15/383 (3%)

Query: 84  VHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE 141
           V + L    +    A++FF W     G   +   +N M+D+LGK   F+ +W  ++ MK 
Sbjct: 181 VRQTLSCYANDWKRALEFFDWVQTQCGFNHTTDTYNGMIDILGKFFEFDLIWVLIQRMKA 240

Query: 142 DGVLSLP---TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198
           D V + P   TF  +F  Y  A   +EA+ ++       + +D  + ++L+ A+C  ++ 
Sbjct: 241 DPV-AYPNHVTFRFVFKRYAAAHLVEEAMNAYYRTEEFNL-RDETSYSNLIDALCEYKHV 298

Query: 199 TSRALEFLNRVKKIV-DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
                 FL   K +V + D   + I+L GW K G  ++  + + EM  R     + + +Y
Sbjct: 299 IEAEELFLKESKDLVFNDDVKIYNIILRGWFKMGWWKKCREFWEEMDRRGV--CKSLYSY 356

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317
             ++    +  +   A+K  + MK +     +  ++  +  +        +++++  M  
Sbjct: 357 SIYMDIQCKSGKPWRAVKLYKEMKKKGIRLDVVAYNTVIRAIGLSEGVDFSIRVFREMKE 416

Query: 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
           +G    PN++ YN +I LLC N  +   +  FDQM   G  P+ +TY+  F C+ K K  
Sbjct: 417 VGCE--PNVVTYNTIIKLLCENGRIREAYGVFDQMREKGYAPNVITYHCFFGCIEKPK-- 472

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 437
            ++ + F  MI +  +P        +              +W  + E G  P   + N L
Sbjct: 473 -QILRTFDRMINSGVRPRMDTYVMLMKKFGRWGFLRPVFIVWKKMEEQGCSPDACAYNAL 531

Query: 438 LVGLRNLGRLSDVRRFAEEMLNR 460
           +  L   G +   R++ EEML +
Sbjct: 532 IDALVQKGMVDLARKYEEEMLAK 554


>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
          Length = 799

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 88/390 (22%), Positives = 170/390 (43%), Gaps = 20/390 (5%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE----DGVLSLPTFASIFDSYCGA 160
           A RG  L+P A+  ++ +L   G   Q+ +AVRV+++      VL    F ++   +C  
Sbjct: 312 AARGLELNPVAYTSVIALLCDEG---QVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRK 368

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR--QENQTSRALEFLNRVKKIVDPDGD 218
           G    A   FD M   G+  D V   +L++ +CR  +  +  R L+ +    K +D D  
Sbjct: 369 GDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEME--DKGLDVDAV 426

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++ +L++G+ K G + EA     +MV++    P +V+ Y      L +   V  A + L 
Sbjct: 427 TYTVLIDGYCKVGKMTEAFLVHNKMVQK-RVTP-NVVTYTALSDGLCKQGDVCAANELLH 484

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            M  +     +  +++ ++ L K  +   A++    M   G  L P++  Y  +IG LC 
Sbjct: 485 EMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAG--LKPDVYTYTTIIGALCQ 542

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
           + ++D       +M+  G  P  +TYN++      + RV   ++    M++    P    
Sbjct: 543 SKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTT 602

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
             + +         +   EI+  +L   ++P E + N L+ G      + +   F  EM+
Sbjct: 603 YNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMI 662

Query: 459 NRRILIYEVTMHKL-----KKAFYNESRSM 483
            +   +   + + L     KK  + E+R +
Sbjct: 663 EKGFRLTASSYNALIRLLNKKKKFTEARRL 692



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 100/422 (23%), Positives = 177/422 (41%), Gaps = 23/422 (5%)

Query: 76  GIIPTPDLVHEVL-QLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWN 134
           GI P+P+  + VL +L  D    AV  F+        S   +N+++  L   GR +    
Sbjct: 221 GISPSPESCNAVLCRLPLDE---AVQLFQELPEKNTCS---YNILLKALCTAGRIKDAHQ 274

Query: 135 AVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
                  D + S P   T+  +   YC   + + A+     M+  G+E + VA  S+++ 
Sbjct: 275 LF-----DEMASPPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIAL 329

Query: 192 ICRQENQTSRALEFL-NRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
           +C  E Q S A+  + + V   V  D   F  ++ G+ ++G++  A   F EM +R    
Sbjct: 330 LC-DEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKR--GL 386

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
               + Y   +  L R  ++ EA + L+ M+ +        ++  +D   K+   T A  
Sbjct: 387 AADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFL 446

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
           + + MV     + PN++ Y A+   LC   DV        +M   G   +  TYN +   
Sbjct: 447 VHNKMVQK--RVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLING 504

Query: 371 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 430
           L K   + +  +   +M +   +P      T I  L  + E + A  +   +L+ GI P 
Sbjct: 505 LCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPT 564

Query: 431 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES--RSMRDIFD 488
             + N L+ G    GR+   +R  E ML + I     T + L K +  E   +S  +I+ 
Sbjct: 565 IVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYK 624

Query: 489 SL 490
            +
Sbjct: 625 GM 626



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 70/327 (21%), Positives = 136/327 (41%), Gaps = 42/327 (12%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDE 165
           RG       +  +++ L + G  ++    ++ M++ G+ +   T+  + D YC  GK  E
Sbjct: 384 RGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTE 443

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILL 224
           A +  + M    V  +VV   +L   +C+Q +  + A E L+ +  K ++ +  ++  L+
Sbjct: 444 AFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCA-ANELLHEMCSKGLELNIFTYNSLI 502

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G  K GN+E+A +T  +M E     P+ V  Y T +  L + K++D A   L+ M  + 
Sbjct: 503 NGLCKAGNLEQAMRTMIDMDEA-GLKPD-VYTYTTIIGALCQSKELDRAHSLLQEMLDKG 560

Query: 285 CFPTL--------------------KFFSNALDILVKLNDSTH---------------AV 309
             PT+                    +     L+  +  N +T+                 
Sbjct: 561 IKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTT 620

Query: 310 QLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFE 369
           +++  M  +   ++PN   YN +I   C   ++     F  +M+  G    + +YN +  
Sbjct: 621 EIYKGM--LSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIR 678

Query: 370 CLIKNKRVHEVEKFFHEMIKNEWQPTP 396
            L K K+  E  + F +M K+     P
Sbjct: 679 LLNKKKKFTEARRLFEKMRKDRLTAEP 705


>gi|225424625|ref|XP_002282301.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial [Vitis vinifera]
 gi|296081374|emb|CBI16807.3| unnamed protein product [Vitis vinifera]
          Length = 519

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 149/347 (42%), Gaps = 11/347 (3%)

Query: 97  SAVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWN-AVRVMKEDGVLSLPTFASI 153
           SAV+ +R   R +  SP   A   +V  L  +G+ +  +   V  M+     S   + S+
Sbjct: 167 SAVEIWRNMVR-KGFSPDEKACRALVLGLCHDGKVDLAYELTVGAMRGRIKFSKSIYNSL 225

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV 213
            + +C AG  D+A      M  +G E D+V  N LL+  C +              +  V
Sbjct: 226 INGFCQAGWIDKAQSIISFMRRNGCEPDLVTYNVLLNYCCDELLLEEAENLMKKMERSGV 285

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP-EHVLAYETFLITLIRGKQVDE 272
           +PD  S+  LL+G  K   +++A   +  MV + E      V++Y T +  L        
Sbjct: 286 EPDVYSYNELLKGLCKANRLDKA---YMMMVNKMEAKGLCDVVSYNTIIKALCTASHTKR 342

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAV 332
           A K    M G+   P +  F+  +   ++   S  A +L D M G+G  L+P+ ++Y  +
Sbjct: 343 AYKLFEEMGGKGITPDVVTFTILIKAFLREGSSNIAKKLLDQMTGLG--LLPDRVLYTTI 400

Query: 333 IGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 392
           +  LC    +      F  MV  G  PD ++YN +   L +  RV E    + +M     
Sbjct: 401 VDHLCKTGKMGMAHSVFCDMVESGITPDVVSYNALINGLCRASRVSEAMHLYEDMHTGGP 460

Query: 393 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 439
            P  +     I  L+   +  +A  +W+ ++E G   L+ + +E LV
Sbjct: 461 CPDEVTFKLIIGGLIWEKKLSVACRVWDQMMEKG-FTLDGAVSETLV 506



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 72/347 (20%), Positives = 150/347 (43%), Gaps = 9/347 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           +A+N+ +++L    + +     V+ M E G    + T+  + +  C AG++D AV  +  
Sbjct: 115 WAYNIYLNLLCCENQLDVALGVVQTMVEKGREPDIVTYTIVINGLCRAGRFDSAVEIWRN 174

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEF-LNRVKKIVDPDGDSFAILLEGWEKEG 231
           M   G   D  A  +L+  +C  + +   A E  +  ++  +      +  L+ G+ + G
Sbjct: 175 MVRKGFSPDEKACRALVLGLC-HDGKVDLAYELTVGAMRGRIKFSKSIYNSLINGFCQAG 233

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            +++A      M  R    P+ ++ Y   L        ++EA   ++ M+     P +  
Sbjct: 234 WIDKAQSIISFM-RRNGCEPD-LVTYNVLLNYCCDELLLEEAENLMKKMERSGVEPDVYS 291

Query: 292 FSNALDILVKLNDSTHA-VQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
           ++  L  L K N    A + + + M   G   + +++ YN +I  LC        ++ F+
Sbjct: 292 YNELLKGLCKANRLDKAYMMMVNKMEAKG---LCDVVSYNTIIKALCTASHTKRAYKLFE 348

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
           +M   G  PD +T+ ++ +  ++    +  +K   +M      P  +   T +  L    
Sbjct: 349 EMGGKGITPDVVTFTILIKAFLREGSSNIAKKLLDQMTGLGLLPDRVLYTTIVDHLCKTG 408

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           +  +A  ++  ++E+GI P   S N L+ GL    R+S+     E+M
Sbjct: 409 KMGMAHSVFCDMVESGITPDVVSYNALINGLCRASRVSEAMHLYEDM 455



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 93/227 (40%), Gaps = 10/227 (4%)

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
            H LAY   + + ++   +D+ALK    M   NC      ++  + +LV+ +    A Q 
Sbjct: 7   RHRLAYRAQISSYVKAGLIDQALKTFDEMTKSNCRVFSIDYNRFIGVLVRQSRFDLAEQY 66

Query: 312 WDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECL 371
           +D M+  GF+L  N   Y+  I  LC   +   + +  + M   G  PD   YN+    L
Sbjct: 67  YDRMIPQGFSL--NSFTYSRFISGLCKVKNFVLIEKLLEDMDRLGYVPDIWAYNIYLNLL 124

Query: 372 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 431
               ++         M++   +P  +     I  L  A   + A+EIW  ++  G  P E
Sbjct: 125 CCENQLDVALGVVQTMVEKGREPDIVTYTIVINGLCRAGRFDSAVEIWRNMVRKGFSPDE 184

Query: 432 ASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 478
            +   L++GL + G++          +  RI        K  K+ YN
Sbjct: 185 KACRALVLGLCHDGKVDLAYELTVGAMRGRI--------KFSKSIYN 223



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 73/338 (21%), Positives = 139/338 (41%), Gaps = 8/338 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
            + +   SY  AG  D+A+ +FD M+        +  N  +  + RQ ++   A ++ +R
Sbjct: 11  AYRAQISSYVKAGLIDQALKTFDEMTKSNCRVFSIDYNRFIGVLVRQ-SRFDLAEQYYDR 69

Query: 209 -VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            + +    +  +++  + G  K  N     K   +M +R  + P+ + AY  +L  L   
Sbjct: 70  MIPQGFSLNSFTYSRFISGLCKVKNFVLIEKLLEDM-DRLGYVPD-IWAYNIYLNLLCCE 127

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
            Q+D AL  ++ M  +   P +  ++  ++ L +      AV++W  MV  GF+  P+  
Sbjct: 128 NQLDVALGVVQTMVEKGREPDIVTYTIVINGLCRAGRFDSAVEIWRNMVRKGFS--PDEK 185

Query: 328 MYNAVIGLLCNNDDVDNVFRF-FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 386
              A++  LC++  VD  +      M     F  S+ YN +     +   + + +     
Sbjct: 186 ACRALVLGLCHDGKVDLAYELTVGAMRGRIKFSKSI-YNSLINGFCQAGWIDKAQSIISF 244

Query: 387 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 446
           M +N  +P  +     +    D    E A  +   +  +G+ P   S NELL GL    R
Sbjct: 245 MRRNGCEPDLVTYNVLLNYCCDELLLEEAENLMKKMERSGVEPDVYSYNELLKGLCKANR 304

Query: 447 LSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMR 484
           L          +  + L   V+ + + KA    S + R
Sbjct: 305 LDKAYMMMVNKMEAKGLCDVVSYNTIIKALCTASHTKR 342


>gi|334188438|ref|NP_200395.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332009303|gb|AED96686.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1136

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 87/380 (22%), Positives = 162/380 (42%), Gaps = 7/380 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N++++VL   G FE+    ++ M++ G   ++ T+ ++   YC  G++  A+   D M 
Sbjct: 236 FNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMK 295

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             GV+ DV   N L+  +CR        L   +  K+++ P+  ++  L+ G+  EG V 
Sbjct: 296 SKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVL 355

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
            A++   EM+  F  +P HV  +   +   I      EALK   +M+ +   P+   +  
Sbjct: 356 IASQLLNEMLS-FGLSPNHV-TFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGV 413

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
            LD L K  +   A   +  M   G  +    I Y  +I  LC N  +D      ++M  
Sbjct: 414 LLDGLCKNAEFDLARGFYMRMKRNG--VCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSK 471

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 414
            G  PD +TY+ +     K  R    ++    + +    P  +  +T I         + 
Sbjct: 472 DGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKE 531

Query: 415 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKK 474
           AI I+  ++  G      + N L+  L   G++++   F   M +  IL   V+   L  
Sbjct: 532 AIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLIN 591

Query: 475 AFYNESRSMR--DIFDSLER 492
            + N    ++   +FD + +
Sbjct: 592 GYGNSGEGLKAFSVFDEMTK 611



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/318 (22%), Positives = 142/318 (44%), Gaps = 7/318 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCG 159
           F+    +G   S  ++ +++D L KN  F+        MK +GV +   T+  + D  C 
Sbjct: 396 FYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCK 455

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGD 218
            G  DEAV+  + MS  G++ D+V  ++L++  C+   +   A E + R+ ++ + P+G 
Sbjct: 456 NGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKV-GRFKTAKEIVCRIYRVGLSPNGI 514

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
            ++ L+    + G ++EA + +  M+   E +      +   + +L +  +V EA +F+R
Sbjct: 515 IYSTLIYNCCRMGCLKEAIRIYEAMI--LEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMR 572

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            M  +   P    F   ++      +   A  ++D M  +G +  P    Y +++  LC 
Sbjct: 573 CMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHH--PTFFTYGSLLKGLCK 630

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
              +    +F   +    A  D++ YN +   + K+  + +    F EM++    P    
Sbjct: 631 GGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYT 690

Query: 399 CATAITMLLDADEPEIAI 416
             + I+ L    +  IAI
Sbjct: 691 YTSLISGLCRKGKTVIAI 708



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/324 (22%), Positives = 135/324 (41%), Gaps = 10/324 (3%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G     + +N++V  L K G+  +    +R M  DG+L +  +F  + + Y  +G+  +A
Sbjct: 543 GHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKA 602

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQEN--QTSRALEFLNRVKKIVDPDGDSFAILL 224
              FD M+  G         SLL  +C+  +  +  + L+ L+ V   VD     +  LL
Sbjct: 603 FSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTV--MYNTLL 660

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE- 283
               K GN+ +A   FGEMV+R      +   Y + +  L R  +   A+ F +  +   
Sbjct: 661 TAMCKSGNLAKAVSLFGEMVQRSILPDSY--TYTSLISGLCRKGKTVIAILFAKEAEARG 718

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
           N  P    ++  +D + K       +   + M  +G    P+++  NA+I        ++
Sbjct: 719 NVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHT--PDIVTTNAMIDGYSRMGKIE 776

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
                  +M      P+  TYN++     K K V      +  +I N   P  L C + +
Sbjct: 777 KTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLV 836

Query: 404 TMLLDADEPEIAIEIWNYILENGI 427
             + +++  EI ++I    +  G+
Sbjct: 837 LGICESNMLEIGLKILKAFICRGV 860



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 94/224 (41%), Gaps = 4/224 (1%)

Query: 149  TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
            TF  +    C  G+ + A     VM+  G+  D    ++++S + R        +     
Sbjct: 866  TFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEM 925

Query: 209  VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
             K+ + P+   +  L+ G  + G+++ A     EM+      P   +A    +  L +  
Sbjct: 926  SKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPN--VAESAMVRALAKCG 983

Query: 269  QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
            + DEA   LR M      PT+  F+  + +  K  +   A++L  +M   G  L  +L+ 
Sbjct: 984  KADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKL--DLVS 1041

Query: 329  YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 372
            YN +I  LC   D+   F  +++M   G   ++ TY  +   L+
Sbjct: 1042 YNVLITGLCAKGDMALAFELYEEMKGDGFLANATTYKALIRGLL 1085



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/234 (22%), Positives = 100/234 (42%), Gaps = 18/234 (7%)

Query: 264 LIRGKQVDEA---LKFLRVMKGENCFPTLKFFS---------NALDILVKLNDSTHAVQ- 310
           L+R +  D A   LK L +M G++ F      +         +  DIL+++      +Q 
Sbjct: 122 LVRARMYDPARHILKELSLMSGKSSFVFGALMTTYRLCNSNPSVYDILIRVYLREGMIQD 181

Query: 311 ---LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMI 367
              ++ +M   GFN  P++   NA++G +  + +  +V+ F  +M+     PD  T+N++
Sbjct: 182 SLEIFRLMGLYGFN--PSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNIL 239

Query: 368 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 427
              L       +      +M K+ + PT +   T +         + AIE+ +++   G+
Sbjct: 240 INVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGV 299

Query: 428 LPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
                + N L+  L    R++       +M  R I   EVT + L   F NE +
Sbjct: 300 DADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGK 353


>gi|125590524|gb|EAZ30874.1| hypothetical protein OsJ_14948 [Oryza sativa Japonica Group]
          Length = 414

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 139/346 (40%), Gaps = 47/346 (13%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQM------WNAVRVMKEDGVLSLPTFASIFDSYCGAG 161
           G R+  YA+N ++  L   GR   +      W   RV   D    + +F  +    C  G
Sbjct: 41  GCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPD----VWSFNVVIKGVCRVG 96

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK--IVDPDGDS 219
           +  +A+   + M+  G   D V  N L+  +CR  N+ SR  E L R+++  +  P+  +
Sbjct: 97  QVQKALELVERMNEFGCSPDTVTHNILVDGLCRT-NEVSRGHEVLRRLQRDGVCMPNVVT 155

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVER------FEWN----------------------- 250
           F  ++ G+ K G +E+A   + +MV          +N                       
Sbjct: 156 FTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMT 215

Query: 251 ----PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
               P  V+ + + +    R  Q+D+AL+    M      P +  FS  +  L K N S 
Sbjct: 216 RLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSD 275

Query: 307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM 366
            A+ L + +  +  ++ P   +YN VI +LC    VD        M   G  PD  TY +
Sbjct: 276 EAIGLLNEL-NLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTI 334

Query: 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
           +        R+ E   FFHEM++    P  +     I+ LL A  P
Sbjct: 335 LIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCLLKAGMP 380



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 128/270 (47%), Gaps = 11/270 (4%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVL--SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           N++VD L +     +    +R ++ DGV   ++ TF S+   YC AGK ++A+  ++ M 
Sbjct: 121 NILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMV 180

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNV 233
             G+  + V  N L++   +  +  S A+E   ++ ++   PD  +F+ L++G+ + G +
Sbjct: 181 ASGIMPNTVTYNVLINGYGKVGDLGS-AVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQL 239

Query: 234 EEANKTFGEMVE-RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK-GENCFPTLKF 291
           ++A + + +M + R + N   V  +   + +L +  + DEA+  L  +    +  P    
Sbjct: 240 DDALRIWSDMAQHRIQPN---VYTFSIIIHSLCKQNRSDEAIGLLNELNLRPDIAPQAFI 296

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           ++  +D+L K      A  +   M   G    P+   Y  +I   C    +     FF +
Sbjct: 297 YNPVIDVLCKCGKVDEANLIRKGMEEKGCR--PDKYTYTILIIGYCMKSRISEAIMFFHE 354

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVE 381
           MV  G  PDS+T N    CL+K    +EV+
Sbjct: 355 MVEAGCSPDSITVNCFISCLLKAGMPNEVD 384



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 70/317 (22%), Positives = 137/317 (43%), Gaps = 17/317 (5%)

Query: 150 FASIFDSYCG-AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           F S   S C  A   D +       S  G   +  A N L+S++  +         F   
Sbjct: 13  FLSFLVSSCTCANLLDASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERW 72

Query: 209 VK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER---FEWNPEHVLAYETFLITL 264
           ++ ++  PD  SF ++++G  + G V++A     E+VER   F  +P+ V  +   +  L
Sbjct: 73  IQDRVYSPDVWSFNVVIKGVCRVGQVQKAL----ELVERMNEFGCSPDTV-THNILVDGL 127

Query: 265 IRGKQVDEALKFLRVMKGEN-CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLM 323
            R  +V    + LR ++ +  C P +  F++ +    K      A+ +++ MV  G  +M
Sbjct: 128 CRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASG--IM 185

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           PN + YN +I       D+ +    + QM      PD +T++ + +   +  ++ +  + 
Sbjct: 186 PNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRI 245

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI-LENGILPLEASANELLVGLR 442
           + +M ++  QP     +  I  L   +  + AI + N + L   I P     N ++  L 
Sbjct: 246 WSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNELNLRPDIAPQAFIYNPVIDVLC 305

Query: 443 NLGRLSD---VRRFAEE 456
             G++ +   +R+  EE
Sbjct: 306 KCGKVDEANLIRKGMEE 322



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/279 (19%), Positives = 107/279 (38%), Gaps = 47/279 (16%)

Query: 200 SRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYET 259
           S+A EF  RV+        ++  L+      G V +    F   ++   ++P+ V ++  
Sbjct: 35  SKASEFGCRVEAY------AYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPD-VWSFNV 87

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG 319
            +  + R  QV +AL+ +  M    C P     +  +D L + N+ +   ++   +   G
Sbjct: 88  VIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDG 147

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
              MPN++ + +VI   C    +++    ++ MV  G  P+++TYN++     K   +  
Sbjct: 148 V-CMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGS 206

Query: 380 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 439
             + + +M       T L C                             P   + + L+ 
Sbjct: 207 AVEVYQQM-------TRLRCP----------------------------PDVVTFSSLID 231

Query: 440 GLRNLGRLSDVRRFAEEMLNRRI----LIYEVTMHKLKK 474
           G    G+L D  R   +M   RI      + + +H L K
Sbjct: 232 GYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCK 270



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 67/154 (43%), Gaps = 1/154 (0%)

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           P++  +N VI  +C    V       ++M   G  PD++T+N++ + L +   V    + 
Sbjct: 80  PDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEV 139

Query: 384 FHEMIKNE-WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 442
              + ++    P  +   + I+    A + E A+ ++N ++ +GI+P   + N L+ G  
Sbjct: 140 LRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYG 199

Query: 443 NLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
            +G L       ++M   R     VT   L   +
Sbjct: 200 KVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGY 233


>gi|125569916|gb|EAZ11431.1| hypothetical protein OsJ_01299 [Oryza sativa Japonica Group]
          Length = 563

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 85/391 (21%), Positives = 161/391 (41%), Gaps = 10/391 (2%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G  L      ++V  L + GRF+ +    R M E G   ++  + +  D  C      +A
Sbjct: 103 GFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQA 162

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKI-VDPDGDSFAILL 224
               + M   G++ +V    +L+  +C+    T RA   FL  +K     P+  ++ +++
Sbjct: 163 FHVLEEMVGRGLKPNVYTHTTLIDGLCKI-GWTERAFRLFLKLIKSSSYKPNVHTYTVMI 221

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G+ +EG +  A      MVE+    P +   Y T +    +G   D A + +  MK E 
Sbjct: 222 GGYCREGKLARAEMLLVRMVEQ-GLKP-NTNTYTTLIGGHCKGGSFDRAFELMNKMKQEG 279

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
             P +  ++  +D   K      A ++  +    G     + I Y  +I   C    +  
Sbjct: 280 FLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKF--DKITYTILITEHCKQGHITY 337

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
               FD+MV +G  PD   Y  +     + +++ E +KFF + +     PT     + I 
Sbjct: 338 ALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIA 397

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 464
                    +A+ ++  +++NG      +   L+ GL    RL + +   E ML++R++ 
Sbjct: 398 GYCKVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRLEEAKALYEGMLDKRLVP 457

Query: 465 YEVTMHKLKKAFYNESRS--MRDIFDSLERR 493
            EVT   L   +    ++     + D L++R
Sbjct: 458 CEVTRVTLTFEYCRREKTSIAVSVLDRLDKR 488


>gi|414871539|tpg|DAA50096.1| TPA: ATP binding protein [Zea mays]
          Length = 692

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 94/423 (22%), Positives = 178/423 (42%), Gaps = 12/423 (2%)

Query: 76  GIIPTPDLVHEVLQLSYDSPS--SAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQM 132
           G  P P + H +L+ +       SAV        RG  L     NL+++ +   G  ++ 
Sbjct: 189 GCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDEA 248

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
            + +R +   G    + ++ ++    C A ++       + M       ++V  N+L+S 
Sbjct: 249 LHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISY 308

Query: 192 ICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
           +CR      R  E L + V+    PD   +A +++G  KEG++E A++    M   +   
Sbjct: 309 LCRN-GLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRM-PSYGLK 366

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P +V+ Y T L  L   ++ +E  + L  M  ++C      F+  +D   +       ++
Sbjct: 367 P-NVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIE 425

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
           L + M+  G   MP++I Y  VI   C    +D        M   G  P++++Y ++ + 
Sbjct: 426 LLEQMLEHG--CMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKG 483

Query: 371 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 430
           L   +R  + E    +MI+      P+   T I  L      E AIE+   +L NG  P 
Sbjct: 484 LCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPD 543

Query: 431 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFD 488
             S + ++ GL   G+  +       M+N+ +    +    +  A   E R   +  +FD
Sbjct: 544 LISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFD 603

Query: 489 SLE 491
           +++
Sbjct: 604 NIQ 606



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 89/391 (22%), Positives = 159/391 (40%), Gaps = 40/391 (10%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++  L +NG FE++   +  M E G    +  +A+I D  C  G  + A    + M 
Sbjct: 302 FNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMP 361

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
            +G++ +VV  N+LL  +C  E              K    D  +F IL++ + + G V+
Sbjct: 362 SYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVD 421

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
              +   +M+E     P+ V+ Y T +    +   +DEA+  L+ M    C P    ++ 
Sbjct: 422 RVIELLEQMLEH-GCMPD-VITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTI 479

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
            L  L        A  L   M+  G  L P  I +N +I  LC    V+       QM+ 
Sbjct: 480 VLKGLCSAERWVDAEDLMSQMIQQGCPLNP--ITFNTLINFLCKKGLVEQAIELLKQMLV 537

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL---NCATA--------- 402
           +G  PD ++Y+ + + L K  +  E  +  + M+     P  +   + A+A         
Sbjct: 538 NGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINK 597

Query: 403 -----------------------ITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 439
                                  I+ L    E E AIE   Y++ +G +P E++   L+ 
Sbjct: 598 VIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIR 657

Query: 440 GLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 470
           GL + G + + +    E+ ++  L   +  H
Sbjct: 658 GLASEGFVKEAQEMLTELCSKGALRKHLMKH 688


>gi|223635748|sp|Q9LVQ5.2|PP432_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g55840
          Length = 1096

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 87/381 (22%), Positives = 162/381 (42%), Gaps = 7/381 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N++++VL   G FE+    ++ M++ G   ++ T+ ++   YC  G++  A+   D M
Sbjct: 195 TFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHM 254

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              GV+ DV   N L+  +CR        L   +  K+++ P+  ++  L+ G+  EG V
Sbjct: 255 KSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKV 314

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
             A++   EM+  F  +P HV  +   +   I      EALK   +M+ +   P+   + 
Sbjct: 315 LIASQLLNEMLS-FGLSPNHV-TFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYG 372

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             LD L K  +   A   +  M   G  +    I Y  +I  LC N  +D      ++M 
Sbjct: 373 VLLDGLCKNAEFDLARGFYMRMKRNG--VCVGRITYTGMIDGLCKNGFLDEAVVLLNEMS 430

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G  PD +TY+ +     K  R    ++    + +    P  +  +T I         +
Sbjct: 431 KDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLK 490

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 473
            AI I+  ++  G      + N L+  L   G++++   F   M +  IL   V+   L 
Sbjct: 491 EAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLI 550

Query: 474 KAFYNESRSMR--DIFDSLER 492
             + N    ++   +FD + +
Sbjct: 551 NGYGNSGEGLKAFSVFDEMTK 571



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/318 (22%), Positives = 142/318 (44%), Gaps = 7/318 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCG 159
           F+    +G   S  ++ +++D L KN  F+        MK +GV +   T+  + D  C 
Sbjct: 356 FYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCK 415

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGD 218
            G  DEAV+  + MS  G++ D+V  ++L++  C+   +   A E + R+ ++ + P+G 
Sbjct: 416 NGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKV-GRFKTAKEIVCRIYRVGLSPNGI 474

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
            ++ L+    + G ++EA + +  M+   E +      +   + +L +  +V EA +F+R
Sbjct: 475 IYSTLIYNCCRMGCLKEAIRIYEAMI--LEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMR 532

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            M  +   P    F   ++      +   A  ++D M  +G +  P    Y +++  LC 
Sbjct: 533 CMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHH--PTFFTYGSLLKGLCK 590

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
              +    +F   +    A  D++ YN +   + K+  + +    F EM++    P    
Sbjct: 591 GGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYT 650

Query: 399 CATAITMLLDADEPEIAI 416
             + I+ L    +  IAI
Sbjct: 651 YTSLISGLCRKGKTVIAI 668



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/324 (22%), Positives = 135/324 (41%), Gaps = 10/324 (3%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G     + +N++V  L K G+  +    +R M  DG+L +  +F  + + Y  +G+  +A
Sbjct: 503 GHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKA 562

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQEN--QTSRALEFLNRVKKIVDPDGDSFAILL 224
              FD M+  G         SLL  +C+  +  +  + L+ L+ V   VD     +  LL
Sbjct: 563 FSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTV--MYNTLL 620

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE- 283
               K GN+ +A   FGEMV+R      +   Y + +  L R  +   A+ F +  +   
Sbjct: 621 TAMCKSGNLAKAVSLFGEMVQRSILPDSY--TYTSLISGLCRKGKTVIAILFAKEAEARG 678

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
           N  P    ++  +D + K       +   + M  +G    P+++  NA+I        ++
Sbjct: 679 NVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHT--PDIVTTNAMIDGYSRMGKIE 736

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
                  +M      P+  TYN++     K K V      +  +I N   P  L C + +
Sbjct: 737 KTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLV 796

Query: 404 TMLLDADEPEIAIEIWNYILENGI 427
             + +++  EI ++I    +  G+
Sbjct: 797 LGICESNMLEIGLKILKAFICRGV 820



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 94/224 (41%), Gaps = 4/224 (1%)

Query: 149  TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
            TF  +    C  G+ + A     VM+  G+  D    ++++S + R        +     
Sbjct: 826  TFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEM 885

Query: 209  VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
             K+ + P+   +  L+ G  + G+++ A     EM+      P   +A    +  L +  
Sbjct: 886  SKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPN--VAESAMVRALAKCG 943

Query: 269  QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
            + DEA   LR M      PT+  F+  + +  K  +   A++L  +M   G  L  +L+ 
Sbjct: 944  KADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKL--DLVS 1001

Query: 329  YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 372
            YN +I  LC   D+   F  +++M   G   ++ TY  +   L+
Sbjct: 1002 YNVLITGLCAKGDMALAFELYEEMKGDGFLANATTYKALIRGLL 1045



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 101/236 (42%), Gaps = 18/236 (7%)

Query: 264 LIRGKQVDEA---LKFLRVMKGENCFPTLKFFS---------NALDILVKLNDSTHAVQ- 310
           L+R +  D A   LK L +M G++ F      +         +  DIL+++      +Q 
Sbjct: 82  LVRARMYDPARHILKELSLMSGKSSFVFGALMTTYRLCNSNPSVYDILIRVYLREGMIQD 141

Query: 311 ---LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMI 367
              ++ +M   GFN  P++   NA++G +  + +  +V+ F  +M+     PD  T+N++
Sbjct: 142 SLEIFRLMGLYGFN--PSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNIL 199

Query: 368 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 427
              L       +      +M K+ + PT +   T +         + AIE+ +++   G+
Sbjct: 200 INVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGV 259

Query: 428 LPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSM 483
                + N L+  L    R++       +M  R I   EVT + L   F NE + +
Sbjct: 260 DADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVL 315


>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
 gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
          Length = 600

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 149/352 (42%), Gaps = 11/352 (3%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           ++ ++ ++        K DEA   F+ M  +G E DV+A  +L+   C+   Q     + 
Sbjct: 6   TIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKA-GQPQVGHKL 64

Query: 206 LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
           LN+  K   PD   +  ++ G+ K G+++     F  +  +   +   V++Y T +  L 
Sbjct: 65  LNQALKRFRPDVFLYTSVIHGYCKAGDLDTGY--FRAVTPKASLD---VISYTTVIKGLA 119

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN 325
             K++DEA +    +K   C P +  ++  +D L+K       ++ ++ M   G + +P 
Sbjct: 120 DSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMS--GSSCVPT 177

Query: 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 385
              Y  VI  LC    + +  + F+QMV  G  PD++TY  + +   K  ++ E  K   
Sbjct: 178 RTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLD 237

Query: 386 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
            M+    +PT +   + +      D    A E+   + E G  P       LL    + G
Sbjct: 238 VMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKG 297

Query: 446 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSL-ERRC 494
           R  +  +   EM  R      +    L    ++  R    R +FDS+ E+ C
Sbjct: 298 RAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGC 349



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 92/413 (22%), Positives = 161/413 (38%), Gaps = 57/413 (13%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           + +++D L K             M + G V    T+ ++ D +  A K DEA    DVM 
Sbjct: 181 YTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVML 240

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV--------DPDGDSFAILLEG 226
             G E   V   S++   C+        L+ +N  K+++        +P    F  LL  
Sbjct: 241 TKGPEPTAVTYGSIVHGFCK--------LDMINEAKEVIAQMRERGCEPGLFIFTSLLSY 292

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
           +  +G  EEA +   EM  R    P+ +L Y + +  L    +V EA      M  + C 
Sbjct: 293 YLSKGRAEEAYQVLTEMTAR-GCAPDVIL-YTSLIDLLFSTGRVPEARHVFDSMIEKGCA 350

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346
           P    +   +    K+ +   A ++ ++M   G    P+   YN+++      + VD  F
Sbjct: 351 PDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVG--PDCFAYNSLMDGYVKLERVDQAF 408

Query: 347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI-KNEWQPTPLNCATAITM 405
             +D+MV  G  P+++T+N++   L K+ +       F EM+ K E  PT ++    I  
Sbjct: 409 GVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDG 468

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE---------- 455
           L  A     A   +  +++ GI+P   +   L+  L   GR+ + ++  E          
Sbjct: 469 LGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPD 528

Query: 456 -------------------------EMLNRRILIYEVTMHKLKKAFYNESRSM 483
                                    EM+ R     EVT   L++ F    R++
Sbjct: 529 VQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAGRAL 581



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 133/313 (42%), Gaps = 4/313 (1%)

Query: 139 MKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           M+E G    L  F S+   Y   G+ +EA      M+  G   DV+   SL+  +     
Sbjct: 274 MRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGR 333

Query: 198 QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
                  F + ++K   PD  ++  +++ + K GNVE A +   E++ +    P+   AY
Sbjct: 334 VPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEIL-ELMAKSGVGPD-CFAY 391

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317
            + +   ++ ++VD+A      M      P    F+  +  L K   +  A  L+  M+ 
Sbjct: 392 NSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLE 451

Query: 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
               + P L+ Y  +I  L     V   F  F +M+  G  P+  TY  +   L K  R+
Sbjct: 452 -KEEVPPTLVSYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRI 510

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 437
            E +K   +M+K    P     +  IT L+D+   + A +++  +++ G  P E +   L
Sbjct: 511 PEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVL 570

Query: 438 LVGLRNLGRLSDV 450
             G R  GR  D+
Sbjct: 571 RRGFRAAGRALDL 583



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 71/348 (20%), Positives = 139/348 (39%), Gaps = 4/348 (1%)

Query: 137 RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
           R +     L + ++ ++      + + DEA   F+ +   G   +VVA  +++  + +  
Sbjct: 98  RAVTPKASLDVISYTTVIKGLADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAG 157

Query: 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
                   F         P   ++ ++++G  K   + +A K F +MV++    P+  + 
Sbjct: 158 RIEDGLKNFEEMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQK-GCVPD-TIT 215

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
           Y T +    +  ++DEA K L VM  +   PT   + + +    KL+    A ++   M 
Sbjct: 216 YTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMR 275

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
             G    P L ++ +++    +    +  ++   +M   G  PD + Y  + + L    R
Sbjct: 276 ERGCE--PGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGR 333

Query: 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 436
           V E    F  MI+    P  L   T I         E A EI   + ++G+ P   + N 
Sbjct: 334 VPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNS 393

Query: 437 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMR 484
           L+ G   L R+       + M+   I    VT + L    + + ++ R
Sbjct: 394 LMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDR 441



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/325 (19%), Positives = 128/325 (39%), Gaps = 52/325 (16%)

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEE 235
           G E  +V+ N+++S +    ++   A +F N  +    +PD  +F  L+ G+ K G  + 
Sbjct: 2   GCEPTIVSYNTVISGLASI-DKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQV 60

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
            +K   + ++R  + P+ V  Y + +    +   +D    + R +  +           +
Sbjct: 61  GHKLLNQALKR--FRPD-VFLYTSVIHGYCKAGDLDTG--YFRAVTPKA----------S 105

Query: 296 LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
           LD+                            I Y  VI  L ++  +D     F+++   
Sbjct: 106 LDV----------------------------ISYTTVIKGLADSKRIDEACELFEELKTA 137

Query: 356 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 415
           G  P+ + Y  + + L+K  R+ +  K F EM  +   PT       I  L  A     A
Sbjct: 138 GCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYTVVIDGLCKAQMLPDA 197

Query: 416 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR----RILIYEVTMHK 471
            +++  +++ G +P   +   L+ G     ++ + R+  + ML +      + Y   +H 
Sbjct: 198 CKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHG 257

Query: 472 LKKA-FYNESRSMRDIFDSLERRCK 495
             K    NE++ +  I    ER C+
Sbjct: 258 FCKLDMINEAKEV--IAQMRERGCE 280


>gi|413948663|gb|AFW81312.1| hypothetical protein ZEAMMB73_082399 [Zea mays]
          Length = 798

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 162/377 (42%), Gaps = 7/377 (1%)

Query: 108 GQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
           GQ   P    ++ ++D L K     +    ++ M + GV+ +  T+  +   YC  G+ +
Sbjct: 231 GQGFPPDVVTYSSLIDGLCKAQAMNKAEAILQHMFDKGVMPNTRTYNIMIRGYCSLGQLE 290

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
           EAV     MS  G++ DVV    L+   C+          F + V+K   P+   + ILL
Sbjct: 291 EAVRLLKKMSGSGLQPDVVTYILLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILL 350

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G+  +G + +       M+   +  P    A+   +    +   VD+A+     M+   
Sbjct: 351 HGYATKGALIDVRDLLDLMIR--DGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNG 408

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
             P +  +S  + IL K+     AV  ++ MV  G  L PN+I + ++I  LC+  +   
Sbjct: 409 LRPDVVSYSTVIHILCKIGRVEDAVYHFNQMVSEG--LSPNIISFTSLIHGLCSIGEWKK 466

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
           V     +M+  G  PD++  N I + L K  RV E + FF  +I    +P  ++  T I 
Sbjct: 467 VEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPNVVSYNTLID 526

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 464
                 + + +I+ ++ ++  G+ P   + N LL G    GR+ D      EM  + +  
Sbjct: 527 GYCFVGKMDESIKQFDRMVSIGLRPDSWTYNALLNGYFKNGRVEDALALYREMFRKDVKF 586

Query: 465 YEVTMHKLKKAFYNESR 481
             +T + +    +   R
Sbjct: 587 CAITSNIILHGLFQAGR 603



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 80/367 (21%), Positives = 143/367 (38%), Gaps = 45/367 (12%)

Query: 81  PDLVHEVLQLSY-----DSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNA 135
           PD+V  +L + Y         +   F     +GQ+ +   +++++      G    + + 
Sbjct: 306 PDVVTYILLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDL 365

Query: 136 VRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194
           + +M  DG+      F  +  +Y   G  D+A+ +F  M  +G+  DVV+ ++++  +C+
Sbjct: 366 LDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCK 425

Query: 195 QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV 254
                     F   V + + P+  SF  L+ G    G                EW     
Sbjct: 426 IGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIG----------------EWKKVEE 469

Query: 255 LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314
           LA+E                     M      P   F +  +D L K      A   +D+
Sbjct: 470 LAFE---------------------MINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDM 508

Query: 315 MVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN 374
           ++ IG    PN++ YN +I   C    +D   + FD+MV  G  PDS TYN +     KN
Sbjct: 509 VIHIGVK--PNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPDSWTYNALLNGYFKN 566

Query: 375 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 434
            RV +    + EM + + +   +     +  L  A     A E++  +++ G      + 
Sbjct: 567 GRVEDALALYREMFRKDVKFCAITSNIILHGLFQAGRIVAARELYMKMVDRGTQLRIETY 626

Query: 435 NELLVGL 441
           N +L GL
Sbjct: 627 NTVLGGL 633



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 94/387 (24%), Positives = 174/387 (44%), Gaps = 26/387 (6%)

Query: 78  IPTPDLVHEVLQLSYDSPSSAVD-----FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQM 132
           IP       +L  +Y +   AVD     F      G R    +++ ++ +L K GR E  
Sbjct: 374 IPFEHRAFNILICAY-AKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDA 432

Query: 133 WNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAV-MSFDVMSMHGVEQDVVAVNSLLS 190
                 M  +G+  ++ +F S+    C  G++ +   ++F++++  G+  D + +N+++ 
Sbjct: 433 VYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMIN-RGIHPDAIFMNTIMD 491

Query: 191 AICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW 249
            +C+ E +   A +F + V  I V P+  S+  L++G+   G ++E+ K F  MV     
Sbjct: 492 NLCK-EGRVVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVS-IGL 549

Query: 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDI----LVKLNDS 305
            P+    Y   L    +  +V++AL   R M  ++    +KF +   +I    L +    
Sbjct: 550 RPDS-WTYNALLNGYFKNGRVEDALALYREMFRKD----VKFCAITSNIILHGLFQAGRI 604

Query: 306 THAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYN 365
             A +L+  MV  G  L   +  YN V+G LC N  VD   R F+ +       D  T+N
Sbjct: 605 VAARELYMKMVDRGTQL--RIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVWTFN 662

Query: 366 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 425
           ++   L+K  R+ E +  F  M+     P  +  +  I   ++    E + +++  + +N
Sbjct: 663 IVINALLKVGRIDEAKSLFSAMVLRGPVPHVITYSLMIKSRIEEGLLEESDDLFLSMEKN 722

Query: 426 GILPLEASANELLVGLRNLGRLSDVRR 452
           G     A ++ L V +R L    DVRR
Sbjct: 723 GC---AADSHMLNVIIRRLLEKGDVRR 746



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 83/394 (21%), Positives = 156/394 (39%), Gaps = 45/394 (11%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS----LPTFASIFDS 156
           F R    G     +++N ++  L    + ++    +  M  DG  +    + ++++I D 
Sbjct: 153 FRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLLHMTADGGYNCSPNVVSYSTIIDG 212

Query: 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPD 216
           +   G+ D+A   FD M   G   DVV  +SL+  +C+ +          +   K V P+
Sbjct: 213 FFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLCKAQAMNKAEAILQHMFDKGVMPN 272

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
             ++ I++ G+   G +E                                     EA++ 
Sbjct: 273 TRTYNIMIRGYCSLGQLE-------------------------------------EAVRL 295

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLL 336
           L+ M G    P +  +   +    K+     A  ++D MV  G    PN  +Y+ ++   
Sbjct: 296 LKKMSGSGLQPDVVTYILLIQYYCKIGRCAEARSVFDSMVRKGQK--PNSTIYHILLHGY 353

Query: 337 CNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 396
                + +V    D M+  G   +   +N++     K+  V +    F EM +N  +P  
Sbjct: 354 ATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDV 413

Query: 397 LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 456
           ++ +T I +L      E A+  +N ++  G+ P   S   L+ GL ++G    V   A E
Sbjct: 414 VSYSTVIHILCKIGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFE 473

Query: 457 MLNRRILIYEVTMHKLKKAFYNESRSM--RDIFD 488
           M+NR I    + M+ +      E R +  +D FD
Sbjct: 474 MINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFD 507



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 73/352 (20%), Positives = 146/352 (41%), Gaps = 24/352 (6%)

Query: 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS------RALEFLNRVKK- 211
           G+   ++A+  FD +        V A NS+L+ + R ++ +S       A+   N + + 
Sbjct: 26  GSLGREDALNLFDELLPQARPASVHAFNSVLTVVARADSSSSPRHSAALAVSLFNTMARS 85

Query: 212 ---IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
              ++  +     IL+  +   G ++ A   F  +  +  W  ++V      +  L  GK
Sbjct: 86  GVNMMAANRYIIGILIRCFCTVGRLDLAFAAF-ALFLKMGWRVQNV-TLNQLIKGLCDGK 143

Query: 269 QVDEALKFL-RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG-IGFNLMPNL 326
           + D+A+  + R M      P +  ++  +  L     S  A++L   M    G+N  PN+
Sbjct: 144 RTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLLHMTADGGYNCSPNV 203

Query: 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 386
           + Y+ +I       +VD  +  FD+M+  G  PD +TY+ + + L K + +++ E     
Sbjct: 204 VSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLCKAQAMNKAEAILQH 263

Query: 387 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 446
           M      P        I       + E A+ +   +  +G+ P   +   L+     +GR
Sbjct: 264 MFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQYYCKIGR 323

Query: 447 LSDVRRFAEEMLNR----RILIYEVTMH--KLKKAFYNESRSMRDIFDSLER 492
            ++ R   + M+ +       IY + +H    K A  +    +RD+ D + R
Sbjct: 324 CAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALID----VRDLLDLMIR 371


>gi|302786208|ref|XP_002974875.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
 gi|300157770|gb|EFJ24395.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
          Length = 382

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 82/339 (24%), Positives = 153/339 (45%), Gaps = 24/339 (7%)

Query: 60  LAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFR--WAGRGQRLSPYAWN 117
           LAHA  D          ++    L++ + +L      +A D FR   A  G R + + +N
Sbjct: 39  LAHAQPD----------VVSYTTLINGLCKLG--RVDAAFDLFRKMVAAGGCRPNAFTYN 86

Query: 118 LMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176
            +VD L K  R +     +    K D    + T+ ++  +    G+ DEA+ +F  M+  
Sbjct: 87  ALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEE 146

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEE 235
           G    +V+ N++++ +CR   + + ALE  N  + +   P+  +++++++G  K   ++E
Sbjct: 147 GYVPTLVSFNAIITGLCRAR-RLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDE 205

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
           A +    MV   E     ++AY   ++      ++D AL  LR M  + C P +  ++  
Sbjct: 206 AQQLLDRMVS--EGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVV 263

Query: 296 LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
           +D L K+     A +++  +V       PN++ Y+A+IG  C    VD   +   +M   
Sbjct: 264 IDKLCKVGRVDDAHEIFRELV--ANKCSPNVVTYSALIGGYCRASRVDEGGKVMREMACR 321

Query: 356 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
              P+ +TYN +   L    R  E    F EM +  + P
Sbjct: 322 ---PNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVP 357



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 144/335 (42%), Gaps = 9/335 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDV-MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN 207
           T + I    C  G+  +A+  FD  + +   + DVV+  +L++ +C+   +   A +   
Sbjct: 12  TTSIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKL-GRVDAAFDLFR 70

Query: 208 RVKKI--VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
           ++       P+  ++  L++G  K+  ++ A     E  +R ++ P+ V+ Y T +  L 
Sbjct: 71  KMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVIAEARKR-DFAPD-VVTYNTLMAALF 128

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN 325
           +  +VDEAL     M  E   PTL  F+  +  L +      A+++++ M+   F+  PN
Sbjct: 129 QLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFH--PN 186

Query: 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 385
           L+ Y+ VI  LC +D +D   +  D+MV  G  PD + Y  +        R+        
Sbjct: 187 LVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLR 246

Query: 386 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
            M+     P  +     I  L      + A EI+  ++ N   P   + + L+ G     
Sbjct: 247 RMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRAS 306

Query: 446 RLSDVRRFAEEMLNR-RILIYEVTMHKLKKAFYNE 479
           R+ +  +   EM  R  ++ Y   +  L     NE
Sbjct: 307 RVDEGGKVMREMACRPNVVTYNTMIWGLSMVDRNE 341



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/316 (20%), Positives = 137/316 (43%), Gaps = 16/316 (5%)

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV--DPDGDSFAILLEGWEKE 230
           M + G++ +    + +L  +CR   + ++ALE  +   ++    PD  S+  L+ G  K 
Sbjct: 1   MDVEGMQCNDRTTSIILQGLCRC-GRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKL 59

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           G V+ A   F +MV      P +   Y   +  L +  ++D A   +   +  +  P + 
Sbjct: 60  GRVDAAFDLFRKMVAAGGCRP-NAFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVV 118

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
            ++  +  L +L     A+  +  M   G+  +P L+ +NA+I  LC    + +    F+
Sbjct: 119 TYNTLMAALFQLGRVDEALATFTQMTEEGY--VPTLVSFNAIITGLCRARRLADALEVFN 176

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP-----TPLNCATAITM 405
           +M+     P+ +TY+++ + L K+ ++ E ++    M+    +P     TPL    +   
Sbjct: 177 EMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAG 236

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 465
            LD+     A+ +   ++  G +P   +   ++  L  +GR+ D      E++  +    
Sbjct: 237 RLDS-----ALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPN 291

Query: 466 EVTMHKLKKAFYNESR 481
            VT   L   +   SR
Sbjct: 292 VVTYSALIGGYCRASR 307


>gi|242055005|ref|XP_002456648.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
 gi|241928623|gb|EES01768.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
          Length = 702

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 163/370 (44%), Gaps = 19/370 (5%)

Query: 116 WNLMVDVLGKNGRFEQ---MWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +M+D L K GRF++   +W+  R+M  +      T+  +    C +G  D A   +  
Sbjct: 267 YKVMLDGLCKLGRFKEAGEVWS--RMMANNHQADTVTYGILIHGLCRSGDVDSAARVYSD 324

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEF-----LNRVKKIVDPDGDSFAILLEGW 227
           M   G+  DV   NSL+   C +  +T  A +F      + +++I      ++ I+ +G 
Sbjct: 325 MVKAGLVLDVSVYNSLIKGFC-EVGRTGEAWKFWDSTGFSGIRQIT-----TYNIMTKGL 378

Query: 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
              G V EA +   ++      +P+ V  + T +  L      + A + L   +      
Sbjct: 379 LDSGMVSEATELLKQLENDASCSPDKV-TFGTLIHGLCENGYANRAFEILEDARNSGEEL 437

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFR 347
            +  +S+ ++   K   +  A +++  MV  G    PN  +YNA+I   C    +++  +
Sbjct: 438 DVFSYSSMINRFCKDGRTHDANEVYKNMVKDGCK--PNSHVYNALINGFCRVSKINDAIK 495

Query: 348 FFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 407
            + +M  +G  P  +TYN + + L K ++  E      EM++  ++P     A+ I  L 
Sbjct: 496 IYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERGFKPDIRTYASLIRGLC 555

Query: 408 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEV 467
              + ++A+ IW+ IL+ G+       N L+ GL + G++ +      EM  +      V
Sbjct: 556 RDKKVDVALRIWDEILDAGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEMKEKNCSPNLV 615

Query: 468 TMHKLKKAFY 477
           T + L   FY
Sbjct: 616 TYNTLMDGFY 625



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 87/395 (22%), Positives = 162/395 (41%), Gaps = 8/395 (2%)

Query: 83  LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED 142
           L+H + + S D  S+A  +      G  L    +N ++    + GR  + W         
Sbjct: 305 LIHGLCR-SGDVDSAARVYSDMVKAGLVLDVSVYNSLIKGFCEVGRTGEAWKFWDSTGFS 363

Query: 143 GVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG-VEQDVVAVNSLLSAICRQENQTSR 201
           G+  + T+  +      +G   EA      +        D V   +L+  +C +    +R
Sbjct: 364 GIRQITTYNIMTKGLLDSGMVSEATELLKQLENDASCSPDKVTFGTLIHGLC-ENGYANR 422

Query: 202 ALEFLNRVKKIVDP-DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF 260
           A E L   +   +  D  S++ ++  + K+G   +AN+ +  MV+       HV  Y   
Sbjct: 423 AFEILEDARNSGEELDVFSYSSMINRFCKDGRTHDANEVYKNMVKDGCKPNSHV--YNAL 480

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF 320
           +    R  ++++A+K    M    C PT+  ++  +D L K      A  L   M+  GF
Sbjct: 481 INGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERGF 540

Query: 321 NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEV 380
              P++  Y ++I  LC +  VD   R +D+++  G   D + +N++   L    +V E 
Sbjct: 541 K--PDIRTYASLIRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILIHGLCSAGKVDEA 598

Query: 381 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 440
              + EM +    P  +   T +    +    + A  +W  IL+NG+ P   + N  + G
Sbjct: 599 FCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDKAASLWTAILDNGLKPDIVTYNTRIKG 658

Query: 441 LRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKA 475
           L +  R  +      E+L   I+   +T   L +A
Sbjct: 659 LCSCNRTPEGVLLLNEVLATGIMPTVITWSILVRA 693



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/270 (22%), Positives = 127/270 (47%), Gaps = 11/270 (4%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G+ L  ++++ M++   K+GR        + M +DG   +   + ++ + +C   K ++A
Sbjct: 434 GEELDVFSYSSMINRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRVSKINDA 493

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQEN---QTSRALEFLNRVKKIVDPDGDSFAIL 223
           +  +  M+ +G    ++  N+L+  +C+ E     +S   E L R  K   PD  ++A L
Sbjct: 494 IKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERGFK---PDIRTYASL 550

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           + G  ++  V+ A + + E+++        V+ +   +  L    +VDEA      MK +
Sbjct: 551 IRGLCRDKKVDVALRIWDEILD--AGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEMKEK 608

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
           NC P L  ++  +D   ++     A  LW  ++  G  L P+++ YN  I  LC+ +   
Sbjct: 609 NCSPNLVTYNTLMDGFYEIGSIDKAASLWTAILDNG--LKPDIVTYNTRIKGLCSCNRTP 666

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIK 373
                 ++++  G  P  +T++++   +IK
Sbjct: 667 EGVLLLNEVLATGIMPTVITWSILVRAVIK 696



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 92/466 (19%), Positives = 181/466 (38%), Gaps = 47/466 (10%)

Query: 37  RPRFPTHLDAPYISSSARIICEILAHASSDDIESALACT-GIIPTPDLVHEVLQLSYDSP 95
           RPRF        +S+ +R +    A A+  D+ S L C  G+     L+   ++    S 
Sbjct: 78  RPRFSESAALVVLSAFSRALMPDAALAAFRDLPSLLGCNPGVRSHNTLLDAFVRARRYSD 137

Query: 96  SSAVDFF---RWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPT 149
           + A  FF        G+R++P    +N+++  L   G  ++  +    ++  GV     T
Sbjct: 138 ADA--FFASLSHGAFGRRIAPNLQTYNIILRSLCARGDVDRAVSLFSSLRRRGVAPDRVT 195

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           ++++        + D A+   D M  +GV+ D V  N+LLS  C +     +A++   ++
Sbjct: 196 YSTLMSGLAKHDQLDNALDLLDEMPNYGVQADAVCYNALLSG-CFRTGMFEKAMKVWEQL 254

Query: 210 KK--IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            +     P+  ++ ++L+G  K G  +EA + +  M+     +    + Y   +  L R 
Sbjct: 255 VRDPGASPNLATYKVMLDGLCKLGRFKEAGEVWSRMMA--NNHQADTVTYGILIHGLCRS 312

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG------FN 321
             VD A +    M        +  +++ +    ++  +  A + WD     G      +N
Sbjct: 313 GDVDSAARVYSDMVKAGLVLDVSVYNSLIKGFCEVGRTGEAWKFWDSTGFSGIRQITTYN 372

Query: 322 LM---------------------------PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
           +M                           P+ + +  +I  LC N   +  F   +    
Sbjct: 373 IMTKGLLDSGMVSEATELLKQLENDASCSPDKVTFGTLIHGLCENGYANRAFEILEDARN 432

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 414
            G   D  +Y+ +     K+ R H+  + +  M+K+  +P        I       +   
Sbjct: 433 SGEELDVFSYSSMINRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRVSKIND 492

Query: 415 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           AI+I+  +  NG  P   + N L+ GL    +  +     +EML R
Sbjct: 493 AIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLER 538


>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
            thaliana]
          Length = 1184

 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 91/391 (23%), Positives = 172/391 (43%), Gaps = 15/391 (3%)

Query: 92   YDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTF 150
            Y + ++ + F  +   G   +  ++N+++  + + GR ++  + + +M+  G    + ++
Sbjct: 668  YKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISY 727

Query: 151  ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK 210
            +++ + YC  G+ D+     +VM   G++ +     S++  +CR          F   ++
Sbjct: 728  STVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIR 787

Query: 211  KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270
            + + PD   +  L++G+ K G++  A+K F EM  R +  P+ VL Y   +    +   +
Sbjct: 788  QGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSR-DITPD-VLTYTAIISGFCQIGDM 845

Query: 271  DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYN 330
             EA K    M  +   P    F+  ++   K      A ++ + M+  G +  PN++ Y 
Sbjct: 846  VEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCS--PNVVTYT 903

Query: 331  AVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 390
             +I  LC   D+D+      +M   G  P+  TYN I   L K+  + E  K        
Sbjct: 904  TLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLV-----G 958

Query: 391  EWQPTPLNCATAI-TMLLDA----DEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
            E++   LN  T   T L+DA     E + A EI   +L  G+ P   + N L+ G    G
Sbjct: 959  EFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHG 1018

Query: 446  RLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
             L D  +    ML + I     T + L K +
Sbjct: 1019 MLEDGEKLLNWMLAKGIAPNATTFNSLVKQY 1049



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 78/416 (18%), Positives = 162/416 (38%), Gaps = 42/416 (10%)

Query: 115  AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +++ +V+   + G  +++W  + VMK  G+  +   + SI    C   K  EA  +F  M
Sbjct: 726  SYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEM 785

Query: 174  SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
               G+  D V   +L+   C++ +  + +  F     + + PD  ++  ++ G+ + G++
Sbjct: 786  IRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDM 845

Query: 234  EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
             EA K F EM  +    P+ V  +   +    +   + +A +    M    C P +  ++
Sbjct: 846  VEAGKLFHEMFCK-GLEPDSV-TFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYT 903

Query: 294  NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF----- 348
              +D L K  D   A +L   M  IG  L PN+  YN+++  LC + +++   +      
Sbjct: 904  TLIDGLCKEGDLDSANELLHEMWKIG--LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFE 961

Query: 349  ------------------------------FDQMVFHGAFPDSLTYNMIFECLIKNKRVH 378
                                            +M+  G  P  +T+N++      +  + 
Sbjct: 962  AAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLE 1021

Query: 379  EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 438
            + EK  + M+     P      + +      +  + A  I+  +   G+ P   +   L+
Sbjct: 1022 DGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLV 1081

Query: 439  VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSM--RDIFDSLER 492
             G      + +     +EM  +   +   T   L K F    + +  R++FD + R
Sbjct: 1082 KGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRR 1137



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 74/331 (22%), Positives = 139/331 (41%), Gaps = 9/331 (2%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F   F      G   EA   F+ M  +G+   V + N  L+ + +   +T+ A+      
Sbjct: 621 FDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREF 680

Query: 210 KKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
            ++ V  +  S+ I++    + G ++EA+     ++E   + P+ V++Y T +    R  
Sbjct: 681 PEVGVCWNVASYNIVIHFVCQLGRIKEAHHLL-LLMELKGYTPD-VISYSTVVNGYCRFG 738

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           ++D+  K + VMK +   P    + + + +L ++     A + +  M+  G  ++P+ ++
Sbjct: 739 ELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQG--ILPDTVV 796

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           Y  +I   C   D+    +FF +M      PD LTY  I     +   + E  K FHEM 
Sbjct: 797 YTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMF 856

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
               +P  +     I     A   + A  + N++++ G  P   +   L+ GL   G L 
Sbjct: 857 CKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLD 916

Query: 449 DVRRFAEEM----LNRRILIYEVTMHKLKKA 475
                  EM    L   I  Y   ++ L K+
Sbjct: 917 SANELLHEMWKIGLQPNIFTYNSIVNGLCKS 947



 Score = 46.6 bits (109), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 36/171 (21%), Positives = 75/171 (43%), Gaps = 3/171 (1%)

Query: 115  AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
             +  ++D   K+G  ++    ++ M   G+  ++ TF  + + +C  G  ++     + M
Sbjct: 971  TYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWM 1030

Query: 174  SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
               G+  +    NSL+   C + N  +    + +   + V PDG ++  L++G  K  N+
Sbjct: 1031 LAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNM 1090

Query: 234  EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            +EA   F EM  + +     V  Y   +   ++ K+  EA +    M+ E 
Sbjct: 1091 KEAWFLFQEM--KGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREG 1139


>gi|357167837|ref|XP_003581356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Brachypodium distachyon]
          Length = 524

 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 94/375 (25%), Positives = 160/375 (42%), Gaps = 18/375 (4%)

Query: 95  PSSAVDFFRWAGRGQRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---T 149
           P  A++  R     Q  SP A  +N ++      GR +     +R M+E G ++ P   T
Sbjct: 132 PVRALELLR-----QMPSPNAVTYNTVIAGFCARGRVQAGIEIMREMRERGGIA-PDKYT 185

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHG-VEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           +A++   +C  GK ++A   FD M   G VE + V  N+L+   C Q N    AL +   
Sbjct: 186 YATVISGWCKVGKVEDATKVFDEMLTEGKVEPNAVMYNALIGGYCDQGN-LEVALRYRGE 244

Query: 209 -VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            V + V     ++ + +     EG   EA+    EM E+    P+    Y   +    + 
Sbjct: 245 MVDRGVSMTVATYNLFVHTLFMEGRAAEAHALVEEMGEK-GLAPD-AFTYNILINGYCKE 302

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
            +  +A+K   VM G+    T+  +++ +  L          +L++  V  G    P+L 
Sbjct: 303 GKEKKAMKMFEVMVGKGIRATVVTYTSLIHALSMKGMVQETDRLFNDAVRRGIR--PDLF 360

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
           MYNA+I   C   D+D  F    +M      PD +TYN +   L    R+ E      EM
Sbjct: 361 MYNALINSHCTGGDMDRAFEIMGEMEKKRITPDDVTYNTLMRGLCLLGRLDEARGLIEEM 420

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
            K   QP  ++  T I+      + + A+++ + ++  G  P   + N ++ GL   G+ 
Sbjct: 421 TKRGIQPDLVSYNTLISGYSMKGDIKDAVKVRDEMMGKGFNPTLLTYNAMIKGLCLNGQG 480

Query: 448 SDVRRFAEEMLNRRI 462
            D     +EM+   I
Sbjct: 481 GDAEDLVKEMVGNGI 495



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 122/275 (44%), Gaps = 9/275 (3%)

Query: 102 FRWAG----RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDS 156
            R+ G    RG  ++   +NL V  L   GR  +    V  M E G+     T+  + + 
Sbjct: 239 LRYRGEMVDRGVSMTVATYNLFVHTLFMEGRAAEAHALVEEMGEKGLAPDAFTYNILING 298

Query: 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPD 216
           YC  GK  +A+  F+VM   G+   VV   SL+ A+  +         F + V++ + PD
Sbjct: 299 YCKEGKEKKAMKMFEVMVGKGIRATVVTYTSLIHALSMKGMVQETDRLFNDAVRRGIRPD 358

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
              +  L+      G+++ A +  GEM E+    P+ V  Y T +  L    ++DEA   
Sbjct: 359 LFMYNALINSHCTGGDMDRAFEIMGEM-EKKRITPDDV-TYNTLMRGLCLLGRLDEARGL 416

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLL 336
           +  M      P L  ++  +       D   AV++ D M+G GFN  P L+ YNA+I  L
Sbjct: 417 IEEMTKRGIQPDLVSYNTLISGYSMKGDIKDAVKVRDEMMGKGFN--PTLLTYNAMIKGL 474

Query: 337 CNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECL 371
           C N    +      +MV +G  PD  TY  + E L
Sbjct: 475 CLNGQGGDAEDLVKEMVGNGITPDDSTYISLIEGL 509


>gi|302798519|ref|XP_002981019.1| hypothetical protein SELMODRAFT_114007 [Selaginella moellendorffii]
 gi|300151073|gb|EFJ17720.1| hypothetical protein SELMODRAFT_114007 [Selaginella moellendorffii]
          Length = 448

 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 129/313 (41%), Gaps = 38/313 (12%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           A+  M+D L K G+  +    V  M +  V    T+ ++    C   + D+A+  FD+M 
Sbjct: 117 AYKTMLDCLIKTGKTREASEVVGEMIKKSVPDGMTYTALISVLCKHNRADDAMKVFDIMV 176

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE--------- 225
              +  +V    SLL+A CR          F+  +++   P   ++ +LL          
Sbjct: 177 EKEIVPNVDVYTSLLAAHCRTRKLDGAYRLFVEMIQRGYGPSASTYGLLLRCLCNGGRSY 236

Query: 226 --------------------------GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYET 259
                                     G    G + EA   F E++E  +   +  + Y  
Sbjct: 237 LAYDIHSSMRSRGHVPDENTYASLIYGCCMAGRITEAKVLFKEVLEGEKAQLDAGI-YNV 295

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG 319
            +  L R  +V+EAL+    M  + C PTL+ ++  +    K N+   A+QL+  M   G
Sbjct: 296 LIEGLCRASKVEEALEVTAGMVDKGCIPTLQTYNALIMGFFKANEVDKALQLFRAMEEKG 355

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
           F+  PN ++Y+  I  LC    ++    FF Q V  G  PD++TYN +   L    R+ E
Sbjct: 356 FS--PNTMIYSTFIDGLCKVGKINEAHEFFQQSVERGCVPDNVTYNALIRGLFGANRMDE 413

Query: 380 VEKFFHEMIKNEW 392
             + + EM +  +
Sbjct: 414 AHRLYREMGERGY 426



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 115/279 (41%), Gaps = 36/279 (12%)

Query: 213 VDPDGDSFAILLEGWEKEGNVEEAN----------------------------KTFGEMV 244
           V PD DS+ +L+ G  K  +V++A                             K  GE+ 
Sbjct: 6   VVPDRDSYNLLVRGLTKLSSVDQARAMLSTMVGEGYDPDVVTCGLLVDKFCEMKRVGEVC 65

Query: 245 ERF---EWNPEHV--LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299
           E F   E N   V  LAY   L  L+     D   KF  +  G+   P +  +   LD L
Sbjct: 66  ELFQELESNGVAVGMLAYNAILKALMCSGDFDGGFKFSDIAVGDGSLPHVLAYKTMLDCL 125

Query: 300 VKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFP 359
           +K   +  A ++   M+      +P+ + Y A+I +LC ++  D+  + FD MV     P
Sbjct: 126 IKTGKTREASEVVGEMIK---KSVPDGMTYTALISVLCKHNRADDAMKVFDIMVEKEIVP 182

Query: 360 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 419
           +   Y  +     + +++    + F EMI+  + P+       +  L +     +A +I 
Sbjct: 183 NVDVYTSLLAAHCRTRKLDGAYRLFVEMIQRGYGPSASTYGLLLRCLCNGGRSYLAYDIH 242

Query: 420 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
           + +   G +P E +   L+ G    GR+++ +   +E+L
Sbjct: 243 SSMRSRGHVPDENTYASLIYGCCMAGRITEAKVLFKEVL 281



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/335 (21%), Positives = 142/335 (42%), Gaps = 19/335 (5%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++NL+V  L K    +Q    +  M  +G    + T   + D +C   +  E    F  +
Sbjct: 12  SYNLLVRGLTKLSSVDQARAMLSTMVGEGYDPDVVTCGLLVDKFCEMKRVGEVCELFQEL 71

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD-----SFAILLEGWE 228
             +GV   ++A N++L A+       S   +   +   I   DG      ++  +L+   
Sbjct: 72  ESNGVAVGMLAYNAILKAL-----MCSGDFDGGFKFSDIAVGDGSLPHVLAYKTMLDCLI 126

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           K G   EA++  GEM+++    P+  + Y   +  L +  + D+A+K   +M  +   P 
Sbjct: 127 KTGKTREASEVVGEMIKK--SVPDG-MTYTALISVLCKHNRADDAMKVFDIMVEKEIVPN 183

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
           +  +++ L    +      A +L+  M+  G+   P+   Y  ++  LCN       +  
Sbjct: 184 VDVYTSLLAAHCRTRKLDGAYRLFVEMIQRGYG--PSASTYGLLLRCLCNGGRSYLAYDI 241

Query: 349 FDQMVFHGAFPDSLTY-NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA-ITML 406
              M   G  PD  TY ++I+ C +   R+ E +  F E+++ E            I  L
Sbjct: 242 HSSMRSRGHVPDENTYASLIYGCCMAG-RITEAKVLFKEVLEGEKAQLDAGIYNVLIEGL 300

Query: 407 LDADEPEIAIEIWNYILENGILPLEASANELLVGL 441
             A + E A+E+   +++ G +P   + N L++G 
Sbjct: 301 CRASKVEEALEVTAGMVDKGCIPTLQTYNALIMGF 335


>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 777

 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 88/397 (22%), Positives = 179/397 (45%), Gaps = 15/397 (3%)

Query: 94  SPSSAVDFFRWAGRGQRLSPYAWNLMVDVL-------GKNGRFEQMWNAVRVMKEDGVL- 145
           +P +A +FF +A       P     +VD+L        K+  F  ++    ++   G+  
Sbjct: 102 NPRTAFNFFHFASE-TLFEPAVAVTVVDLLIHVYSTQFKHLGFGVVFELFSLLANKGLFP 160

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           SL T   +  S   A +   +   FD+M   GV  DV   +++++A C    +   A+E 
Sbjct: 161 SLKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMVNAFCTG-GRVDDAIEL 219

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
             +++K+ V P+  ++  ++ G  K G ++EA + F E +E+    P  ++ Y   +  L
Sbjct: 220 FRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQ-FKEKMEKERVKPS-LVTYGVLINGL 277

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
           ++ ++ DEA   L+ M      P    ++  +D   ++ + + A+Q+ D M+  G +  P
Sbjct: 278 VKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMISNGIS--P 335

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           N +  N++I   C ++ +++     ++M+  G   +  T+  +   L    R      F 
Sbjct: 336 NSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFI 395

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
            EM+   ++P        ++ L    +   AIE+W  +LE G      ++N L+ GL   
Sbjct: 396 MEMLLRNFKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEA 455

Query: 445 GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
           G   +  +  +EML R +++  ++ + L  A   E +
Sbjct: 456 GSKEEAAKLLKEMLERGLVLDSISYNTLILACCKEGK 492



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 95/396 (23%), Positives = 170/396 (42%), Gaps = 15/396 (3%)

Query: 98  AVDFFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFD 155
           A++ FR   + G   +   +N ++  L KNGR ++ +     M+++ V  SL T+  + +
Sbjct: 216 AIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLVTYGVLIN 275

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVD 214
                 ++DEA      MS  G   + V  N+L+   CR  N  S AL+  +  +   + 
Sbjct: 276 GLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGN-ISTALQIRDDMISNGIS 334

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR---GKQVD 271
           P+  +   L++G+ K   +E A     EM+         V+   TF   + R     + D
Sbjct: 335 PNSVTCNSLIQGYCKSNQMEHAEHLLEEML-----TGGGVINQGTFTSVIHRLCLKCRFD 389

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA 331
            AL F+  M   N  P     +  +  L +    + A++LW  ++  GF    N +  NA
Sbjct: 390 SALLFIMEMLLRNFKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGF--AANTVTSNA 447

Query: 332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
           +I  LC     +   +   +M+  G   DS++YN +     K  +V E  K   EM++  
Sbjct: 448 LIHGLCEAGSKEEAAKLLKEMLERGLVLDSISYNTLILACCKEGKVEEGFKLKEEMVRRG 507

Query: 392 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 451
            QP        +  L +  + E A  +W+   +NG  P   +   ++ G     R+ +  
Sbjct: 508 IQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKANRVEEGE 567

Query: 452 RFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIF 487
           +  +EM+  +I    V    L +A Y E+ +MR+ F
Sbjct: 568 KLFQEMVTMKIEQNAVVYGTLIRA-YCENGNMREAF 602



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 140/332 (42%), Gaps = 45/332 (13%)

Query: 131 QMWNAVRVMKE----DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN 186
           QM +A  +++E     GV++  TF S+    C   ++D A++    M +   + +   + 
Sbjct: 352 QMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFIMEMLLRNFKPNDGLLT 411

Query: 187 SLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245
            L+S +C Q  + S A+E   R+ +K    +  +   L+ G  + G+ EEA K   EM+E
Sbjct: 412 LLVSGLC-QNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLE 470

Query: 246 RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS 305
           R        ++Y T ++   +  +V+E  K                              
Sbjct: 471 RGLVLDS--ISYNTLILACCKEGKVEEGFK------------------------------ 498

Query: 306 THAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYN 365
                L + MV  G  + P++  YN ++  LCN   ++     + +   +G FPD+ TY 
Sbjct: 499 -----LKEEMVRRG--IQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYG 551

Query: 366 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 425
           ++ +   K  RV E EK F EM+  + +   +   T I    +      A  + + +   
Sbjct: 552 IMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSR 611

Query: 426 GILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           GI    A+ + L+ GL N+G +    +  +EM
Sbjct: 612 GIPQTSATYSSLIHGLSNIGLVDSANQLLDEM 643



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 86/369 (23%), Positives = 154/369 (41%), Gaps = 31/369 (8%)

Query: 118 LMVDVLGKNGRFEQ---MWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           L+V  L +NG+  +   +W   R++++    +  T  ++    C AG  +EA      M 
Sbjct: 412 LLVSGLCQNGKQSEAIELW--YRLLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEML 469

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNV 233
             G+  D ++ N+L+ A C+ E +     +     V++ + PD  ++ +LL G    G +
Sbjct: 470 ERGLVLDSISYNTLILACCK-EGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKI 528

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP---TLK 290
           EEA    G +    + N     AY         G  +D   K  RV +GE  F    T+K
Sbjct: 529 EEA----GGLWHECKKNGNFPDAY-------TYGIMIDGYCKANRVEEGEKLFQEMVTMK 577

Query: 291 FFSNAL--DILVKL----NDSTHAVQLWDIMVGIGFNLMPNL-IMYNAVIGLLCNNDDVD 343
              NA+    L++      +   A +L D M   G   +P     Y+++I  L N   VD
Sbjct: 578 IEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRG---IPQTSATYSSLIHGLSNIGLVD 634

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
           +  +  D+M   G  P+ + Y  +     K  ++H+V+    EM  N   P  +     I
Sbjct: 635 SANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMI 694

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
                    + A ++ N + + GI+P   + N L  G    G++ +  +  + M    I 
Sbjct: 695 NGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNALTNGFCKEGKMEEALKVCDLMSTGGIS 754

Query: 464 IYEVTMHKL 472
           + ++T   L
Sbjct: 755 LDDITYTTL 763



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 113/267 (42%), Gaps = 11/267 (4%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKY 163
           RG +   Y +N+++  L   G+ E+        K++G  + P   T+  + D YC A + 
Sbjct: 506 RGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNG--NFPDAYTYGIMIDGYCKANRV 563

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD-SFAI 222
           +E    F  M    +EQ+ V   +L+ A C   N    A    + ++    P    +++ 
Sbjct: 564 EEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNM-REAFRLRDDMRSRGIPQTSATYSS 622

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+ G    G V+ AN+   EM  R E    +V+ Y   +    +  Q+ +    L+ M  
Sbjct: 623 LIHGLSNIGLVDSANQLLDEM--RKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQEMSI 680

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
            N  P    ++  ++   KL +   A +L + M   G  ++P+ + YNA+    C    +
Sbjct: 681 NNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKG--IVPDAVTYNALTNGFCKEGKM 738

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFE 369
           +   +  D M   G   D +TY  + +
Sbjct: 739 EEALKVCDLMSTGGISLDDITYTTLID 765


>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
 gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
          Length = 684

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 78/378 (20%), Positives = 155/378 (41%), Gaps = 36/378 (9%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF  +   +C  G  + A+   + MS HG   +    N +++ IC+Q  +   A +FLN 
Sbjct: 287 TFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQ-GRVDDAFQFLNN 345

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           +      PD  S+  +L+G  +    E+A +   EMV +    P + + + TF+  L + 
Sbjct: 346 MGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRK--NCPPNEVTFNTFICILCQK 403

Query: 268 KQVDEALKFLRVMKGENC-------------FPTLKFFSNALDILVKLNDSTHAVQLWDI 314
             +++A   +  M    C             F       +AL++   +    + +    +
Sbjct: 404 GLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCKPNTITYTTL 463

Query: 315 MVGIG-----------------FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGA 357
           + G+                   +  PN++ +N ++   C    +D      +QM+ HG 
Sbjct: 464 LTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGC 523

Query: 358 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 417
            P+ +TYN + + + K+    E  +  H ++ N   P  +  ++ I +L   D  E AI+
Sbjct: 524 TPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIK 583

Query: 418 IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFY 477
           +++ + + G+ P     N++L+ L           F   M++   +  E+T   L +   
Sbjct: 584 MFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLA 643

Query: 478 NES--RSMRDIFDSLERR 493
           NE   +  RD+   L  R
Sbjct: 644 NEDFLKETRDLLRELCSR 661



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 140/311 (45%), Gaps = 11/311 (3%)

Query: 122 VLGKNGRFEQMWNAVRVMKEDGVLSLP----TFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           VL    R E+  +A  ++KE    + P    TF +     C  G  ++A M  + MS HG
Sbjct: 361 VLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHG 420

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
            E ++V  N+L++  C Q  +   ALE    +     P+  ++  LL G      ++ A 
Sbjct: 421 CEVNIVTYNALVNGFCVQ-GRVDSALELFYSMP--CKPNTITYTTLLTGLCNAERLDAAA 477

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297
           +   EM+++ +  P +V+ +   +    +   +DEA++ +  M    C P L  ++  LD
Sbjct: 478 ELLAEMLQK-DCAP-NVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLD 535

Query: 298 ILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGA 357
            + K  +S  A++L   +V  G +  P+++ Y+++IG+L   D V+   + F  +   G 
Sbjct: 536 GITKDCNSEEALELLHGLVSNGVS--PDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGM 593

Query: 358 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 417
            P ++ YN I   L K         FF  M+ N   P  L   T I  L + D  +   +
Sbjct: 594 RPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRD 653

Query: 418 IWNYILENGIL 428
           +   +   G+L
Sbjct: 654 LLRELCSRGVL 664



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 99/475 (20%), Positives = 188/475 (39%), Gaps = 70/475 (14%)

Query: 26  SPTSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVH 85
           +P++ +P+ P   R    +    ++ +AR++    +   + D+     CT +I   +L  
Sbjct: 37  APSASSPN-PANARLRRLIARDDLAEAARLVDRATSRGEAPDV---YLCTKLIR--NLCR 90

Query: 86  EVLQLSYDSPSSAVDFFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV 144
                     S A    R A R G  +  +A+N +V       R+ Q+  A R+     +
Sbjct: 91  R------GRTSDAARVLRAAERSGTAVDVFAYNTLV---AGYCRYGQLDAARRL-----I 136

Query: 145 LSLP------TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198
            S+P      T+  I    C  G+  EA+   D M   G +  VV    LL A+C+    
Sbjct: 137 ASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTG- 195

Query: 199 TSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
             +A+E L+ ++ K   P+  ++ +++ G  +EG V++A + F   +  + + P+ V +Y
Sbjct: 196 FGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDA-REFLNRLSSYGFQPDTV-SY 253

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317
            T L  L   K+ ++  +    M  +NC                                
Sbjct: 254 TTVLKGLCAAKRWEDVEELFAEMMEKNC-------------------------------- 281

Query: 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
                MPN + ++ ++   C    V+   +  +QM  HG   ++   N++   + K  RV
Sbjct: 282 -----MPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRV 336

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 437
            +  +F + M      P  ++  T +  L  A+  E A E+   ++     P E + N  
Sbjct: 337 DDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTF 396

Query: 438 LVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSL 490
           +  L   G +       E+M      +  VT + L   F  + R  S  ++F S+
Sbjct: 397 ICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSM 451


>gi|357499677|ref|XP_003620127.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495142|gb|AES76345.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 412

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 126/265 (47%), Gaps = 9/265 (3%)

Query: 127 GRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAV 185
           G  ++  N + +M + G+  +  T++S+ D YC   + + A   F  MS+ GV  +V + 
Sbjct: 149 GNVKEAKNVLAMMMKQGINPNAVTYSSLMDGYCLVNEVNNAKGIFSTMSLRGVTANVWSY 208

Query: 186 NSLLSAICRQENQTSRALEFLNRV--KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
           N +++  C+ +  T  A+     +  +K++ PD  ++  L+ G  K G +  A K   EM
Sbjct: 209 NIMINGFCKIK-MTDEAMNLFEEMHCRKLI-PDVVTYNSLINGLCKSGKISYALKLVDEM 266

Query: 244 VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303
            +R +  P  ++ Y + L  L +  QVD+A+  L+ +K +   P +  ++  +D L K  
Sbjct: 267 HDRGQ--PPDIITYSSLLDALCKNHQVDKAIALLKNLKDQGIRPNMYTYTILIDGLCKGG 324

Query: 304 DSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLT 363
               A  +++ ++  G+N+  N   Y  +I   CN    D       +M  +  FP++LT
Sbjct: 325 RLEDAHNIFEDLLVKGYNITVN--TYTVMIHGFCNKGLFDEALALLSKMKDNSCFPNALT 382

Query: 364 YNMIFECLIKNKRVHEVEKFFHEMI 388
           Y +I   L  N    + E    EMI
Sbjct: 383 YEIIIRSLFDNDENDKAENLLREMI 407



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 93/189 (49%), Gaps = 5/189 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F   + RG   + +++N+M++   K    ++  N    M    ++  + T+ S+ +  C 
Sbjct: 193 FSTMSLRGVTANVWSYNIMINGFCKIKMTDEAMNLFEEMHCRKLIPDVVTYNSLINGLCK 252

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGD 218
           +GK   A+   D M   G   D++  +SLL A+C+  +Q  +A+  L  +K + + P+  
Sbjct: 253 SGKISYALKLVDEMHDRGQPPDIITYSSLLDALCK-NHQVDKAIALLKNLKDQGIRPNMY 311

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++ IL++G  K G +E+A+  F +++ +  +N   V  Y   +         DEAL  L 
Sbjct: 312 TYTILIDGLCKGGRLEDAHNIFEDLLVK-GYNIT-VNTYTVMIHGFCNKGLFDEALALLS 369

Query: 279 VMKGENCFP 287
            MK  +CFP
Sbjct: 370 KMKDNSCFP 378



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 92/219 (42%), Gaps = 7/219 (3%)

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY 329
           V EA   L +M  +   P    +S+ +D    +N+  +A  ++  M   G  +  N+  Y
Sbjct: 151 VKEAKNVLAMMMKQGINPNAVTYSSLMDGYCLVNEVNNAKGIFSTMSLRG--VTANVWSY 208

Query: 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389
           N +I   C     D     F++M      PD +TYN +   L K+ ++    K   EM  
Sbjct: 209 NIMINGFCKIKMTDEAMNLFEEMHCRKLIPDVVTYNSLINGLCKSGKISYALKLVDEMHD 268

Query: 390 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 449
               P  +  ++ +  L    + + AI +   + + GI P   +   L+ GL   GRL D
Sbjct: 269 RGQPPDIITYSSLLDALCKNHQVDKAIALLKNLKDQGIRPNMYTYTILIDGLCKGGRLED 328

Query: 450 VRRFAEEML----NRRILIYEVTMHKL-KKAFYNESRSM 483
                E++L    N  +  Y V +H    K  ++E+ ++
Sbjct: 329 AHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALAL 367


>gi|18407744|ref|NP_564809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169913|sp|Q9CAM8.1|PP100_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63150
 gi|12323259|gb|AAG51611.1|AC010795_15 unknown protein; 70626-72515 [Arabidopsis thaliana]
 gi|15810427|gb|AAL07101.1| unknown protein [Arabidopsis thaliana]
 gi|24030501|gb|AAN41397.1| unknown protein [Arabidopsis thaliana]
 gi|332195941|gb|AEE34062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 92/386 (23%), Positives = 167/386 (43%), Gaps = 14/386 (3%)

Query: 98  AVDFFRWAGRGQRLSPY----AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFAS 152
           AVD F   G   +  P+     +N ++  + K  +FE + +    M+  G+   L T++ 
Sbjct: 67  AVDLF---GDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSI 123

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI 212
             + +C   +   A+     M   G E D+V ++SLL+  C  + + S A+  ++++ ++
Sbjct: 124 FINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSK-RISDAVALVDQMVEM 182

Query: 213 -VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD 271
              PD  +F  L+ G        EA     +MV+R    P+ V  Y T +  L +   +D
Sbjct: 183 GYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQR-GCQPDLV-TYGTVVNGLCKRGDID 240

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA 331
            AL  L  M+       +  F+  +D L K      AV L+  M   G  + PN++ YN+
Sbjct: 241 LALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKG--IRPNVVTYNS 298

Query: 332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
           +I  LCN     +  R    M+     P+ +T+N + +   K  ++ E EK   EMI+  
Sbjct: 299 LINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRS 358

Query: 392 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 451
             P  +     I      +  + A +++ +++    LP   + N L+ G     R+ D  
Sbjct: 359 IDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGV 418

Query: 452 RFAEEMLNRRILIYEVTMHKLKKAFY 477
               EM  R ++   VT   + + F+
Sbjct: 419 ELFREMSQRGLVGNTVTYTTIIQGFF 444



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 140/332 (42%), Gaps = 10/332 (3%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF ++        K  EAV   D M   G + D+V   ++++ +C++ +    AL  LN+
Sbjct: 190 TFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGD-IDLALNLLNK 248

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           ++   +  +   F  +++   K  +VE A   F EM E     P +V+ Y + +  L   
Sbjct: 249 MEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEM-ETKGIRP-NVVTYNSLINCLCNY 306

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
            +  +A + L  M  +   P +  F+  +D   K      A +L + M+    +  P+ I
Sbjct: 307 GRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSID--PDTI 364

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            YN +I   C ++ +D   + F  MV     P+  TYN +     K KRV +  + F EM
Sbjct: 365 TYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREM 424

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
            +       +   T I     A + + A  ++  ++ N +     + + LL GL + G+L
Sbjct: 425 SQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKL 484

Query: 448 SDV----RRFAEEMLNRRILIYEVTMHKLKKA 475
                  +   +  +   I IY   +  + KA
Sbjct: 485 DTALVIFKYLQKSEMELNIFIYNTMIEGMCKA 516



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 77/338 (22%), Positives = 132/338 (39%), Gaps = 43/338 (12%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  F  +  +     K++  +   + M   G+  D+   +  ++  CR+ +Q S AL  
Sbjct: 82  SIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRR-SQLSLALAV 140

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF-LIT 263
           L ++ K+  +PD  + + LL G+     + +A     +MVE   + P+      TF   T
Sbjct: 141 LAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVE-MGYKPD------TFTFTT 193

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLM 323
           LI G                               L   N ++ AV L D MV  G    
Sbjct: 194 LIHG-------------------------------LFLHNKASEAVALVDQMVQRG--CQ 220

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           P+L+ Y  V+  LC   D+D      ++M       + + +N I + L K + V      
Sbjct: 221 PDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDL 280

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
           F EM     +P  +   + I  L +      A  + + +LE  I P   + N L+     
Sbjct: 281 FTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFK 340

Query: 444 LGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
            G+L +  +  EEM+ R I    +T + L   F   +R
Sbjct: 341 EGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNR 378



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 76/358 (21%), Positives = 140/358 (39%), Gaps = 10/358 (2%)

Query: 92  YDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPT 149
           Y     AVD F     +G R +   +N +++ L   GR+      +  M E  +  ++ T
Sbjct: 271 YRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVT 330

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F ++ D++   GK  EA    + M    ++ D +  N L++  C           F   V
Sbjct: 331 FNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMV 390

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
            K   P+  ++  L+ G+ K   VE+  + F EM +R      + + Y T +    +   
Sbjct: 391 SKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVG--NTVTYTTIIQGFFQAGD 448

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY 329
            D A    + M        +  +S  L  L        A+ ++  +      L  N+ +Y
Sbjct: 449 CDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMEL--NIFIY 506

Query: 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389
           N +I  +C    V   +  F  +      PD +TYN +   L   + + E +  F +M +
Sbjct: 507 NTMIEGMCKAGKVGEAWDLFCSLSIK---PDVVTYNTMISGLCSKRLLQEADDLFRKMKE 563

Query: 390 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
           +   P      T I   L   +   + E+   +  +G +  +AS   L+  + + GRL
Sbjct: 564 DGTLPNSGTYNTLIRANLRDCDRAASAELIKEMRSSGFVG-DASTISLVTNMLHDGRL 620


>gi|449457845|ref|XP_004146658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Cucumis sativus]
 gi|449484609|ref|XP_004156929.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Cucumis sativus]
          Length = 501

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 149/354 (42%), Gaps = 16/354 (4%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPT---FASIFDSYCGAGKYDEAVMSFDV 172
           ++++ +    GR  +  +++RV  K       PT   + S+        +   A   +  
Sbjct: 115 DILLSICRAYGRIHKPLDSIRVFHKMQDFHCKPTEKSYISVLAILVEENQLKSAFRFYRD 174

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAILLEGWEKEG 231
           M   G+   V ++N L+ A C+      +A+  F        +PD  ++  L+ G  +  
Sbjct: 175 MRKMGIPPTVTSLNVLIKAFCKNSGTMDKAMHLFRTMSNHGCEPDSYTYGTLINGLCRFR 234

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           ++ EA +   EM E    +P  V+ Y + +  L +   VDEA++ L  MK +N  P +  
Sbjct: 235 SIVEAKELLQEM-ETKGCSPS-VVTYTSIIHGLCQLNNVDEAMRLLEDMKDKNIEPNVFT 292

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           +S+ +D   K   S+ A  + ++M  I   L PN+I Y+ ++  LCN   ++     FD+
Sbjct: 293 YSSLMDGFCKTGHSSRARDILELM--IQKRLRPNMISYSTLLNGLCNEGKINEALEIFDR 350

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA-------TAIT 404
           M   G  PD+  Y  I  CL    R  E   F  EM+    +P  +  +         I 
Sbjct: 351 MKLQGFKPDAGLYGKIVNCLCDVSRFQEAANFLDEMVLCGIKPNRITWSLHVRTHNRVIH 410

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
            L   +    A +++  +L  GI     + N LL    N   L    R  +EM+
Sbjct: 411 GLCTINNSNRAFQLYLSVLTRGISITVDTFNSLLKCFCNKKDLPKTSRILDEMV 464



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/298 (22%), Positives = 127/298 (42%), Gaps = 15/298 (5%)

Query: 98  AVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFD 155
           A+  FR  +  G     Y +  +++ L +     +    ++ M+  G   S+ T+ SI  
Sbjct: 204 AMHLFRTMSNHGCEPDSYTYGTLINGLCRFRSIVEAKELLQEMETKGCSPSVVTYTSIIH 263

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVD 214
             C     DEA+   + M    +E +V   +SL+   C+    +SRA + L   ++K + 
Sbjct: 264 GLCQLNNVDEAMRLLEDMKDKNIEPNVFTYSSLMDGFCKT-GHSSRARDILELMIQKRLR 322

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           P+  S++ LL G   EG + EA + F  M  +  + P+  L Y   +  L    +  EA 
Sbjct: 323 PNMISYSTLLNGLCNEGKINEALEIFDRMKLQ-GFKPDAGL-YGKIVNCLCDVSRFQEAA 380

Query: 275 KFLRVMKGENCFPT-------LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
            FL  M      P        ++  +  +  L  +N+S  A QL+  ++  G ++  +  
Sbjct: 381 NFLDEMVLCGIKPNRITWSLHVRTHNRVIHGLCTINNSNRAFQLYLSVLTRGISITVD-- 438

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 385
            +N+++   CN  D+    R  D+MV +G  P    ++ +  C    ++  +  K   
Sbjct: 439 TFNSLLKCFCNKKDLPKTSRILDEMVINGCIPQGEMWSTMVNCFCDERKACDAMKLLQ 496



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 136/320 (42%), Gaps = 22/320 (6%)

Query: 97  SAVDFFRWAGR-GQRLSPYAWNLMVDVLGKN-GRFEQMWNAVRVMKEDGVL-SLPTFASI 153
           SA  F+R   + G   +  + N+++    KN G  ++  +  R M   G      T+ ++
Sbjct: 167 SAFRFYRDMRKMGIPPTVTSLNVLIKAFCKNSGTMDKAMHLFRTMSNHGCEPDSYTYGTL 226

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KI 212
            +  C      EA      M   G    VV   S++  +C Q N    A+  L  +K K 
Sbjct: 227 INGLCRFRSIVEAKELLQEMETKGCSPSVVTYTSIIHGLC-QLNNVDEAMRLLEDMKDKN 285

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
           ++P+  +++ L++G+ K G+   A      M+++    P ++++Y T L  L    +++E
Sbjct: 286 IEPNVFTYSSLMDGFCKTGHSSRARDILELMIQK-RLRP-NMISYSTLLNGLCNEGKINE 343

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM---- 328
           AL+    MK +   P    +   ++ L  ++    A    D MV  G  + PN I     
Sbjct: 344 ALEIFDRMKLQGFKPDAGLYGKIVNCLCDVSRFQEAANFLDEMVLCG--IKPNRITWSLH 401

Query: 329 ---YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 385
              +N VI  LC  ++ +  F+ +  ++  G      T+N + +C    K + +  +   
Sbjct: 402 VRTHNRVIHGLCTINNSNRAFQLYLSVLTRGISITVDTFNSLLKCFCNKKDLPKTSRILD 461

Query: 386 EMIKNEWQP------TPLNC 399
           EM+ N   P      T +NC
Sbjct: 462 EMVINGCIPQGEMWSTMVNC 481



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 106/247 (42%), Gaps = 9/247 (3%)

Query: 252 EHVLAYETFLITLIRG-KQVDEALKFLRV---MKGENCFPTLKFFSNALDILVKLNDSTH 307
           E +   E  L+++ R   ++ + L  +RV   M+  +C PT K + + L ILV+ N    
Sbjct: 108 EKIDVTEDILLSICRAYGRIHKPLDSIRVFHKMQDFHCKPTEKSYISVLAILVEENQLKS 167

Query: 308 AVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD-VDNVFRFFDQMVFHGAFPDSLTYNM 366
           A + +  M  +G  + P +   N +I   C N   +D     F  M  HG  PDS TY  
Sbjct: 168 AFRFYRDMRKMG--IPPTVTSLNVLIKAFCKNSGTMDKAMHLFRTMSNHGCEPDSYTYGT 225

Query: 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 426
           +   L + + + E ++   EM      P+ +   + I  L   +  + A+ +   + +  
Sbjct: 226 LINGLCRFRSIVEAKELLQEMETKGCSPSVVTYTSIIHGLCQLNNVDEAMRLLEDMKDKN 285

Query: 427 ILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMR 484
           I P   + + L+ G    G  S  R   E M+ +R+    ++   L     NE +     
Sbjct: 286 IEPNVFTYSSLMDGFCKTGHSSRARDILELMIQKRLRPNMISYSTLLNGLCNEGKINEAL 345

Query: 485 DIFDSLE 491
           +IFD ++
Sbjct: 346 EIFDRMK 352


>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
 gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
          Length = 814

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 142/310 (45%), Gaps = 24/310 (7%)

Query: 92  YDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPT 149
           Y     A D F   A +GQ    +++N+M++     G    M +   +M  DG+   + T
Sbjct: 337 YGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICT 396

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F  +  +Y   G  D+A++ F+ M  HGV+ +V+   ++++A+CR         +F   +
Sbjct: 397 FNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMI 456

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
            + V PD  ++  L++G+   G++ +A +   E++     N  H+   +  L + I    
Sbjct: 457 DQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMN----NGMHL---DIVLFSSI---- 505

Query: 270 VDEALKFLRVMKGENCF---------PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF 320
           ++   K  RVM  +N F         PT   +S  +D    +     A++++D MV  G 
Sbjct: 506 INNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGI 565

Query: 321 NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEV 380
              PN ++Y  ++   C    +D     F +M+  G  P ++ YN+I + L +  R    
Sbjct: 566 E--PNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPA 623

Query: 381 EKFFHEMIKN 390
           +  FHEM ++
Sbjct: 624 KVKFHEMTES 633



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 94/415 (22%), Positives = 174/415 (41%), Gaps = 57/415 (13%)

Query: 94  SPSSAVDFF-RWAGRGQR---LSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LS 146
            P+ AV  F R A R Q    LSP  + + +++D   +  R E        +   G+ + 
Sbjct: 86  GPALAVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVD 145

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMH-----GVEQDVVAVNSLLSAICRQ--ENQT 199
           +     +   +C A + DEA+   D++ +H     G   DV + + LL ++C Q    Q 
Sbjct: 146 IIIANHLLKGFCEAKRTDEAL---DIL-LHRTPELGCVPDVFSYSILLKSLCDQGKSGQA 201

Query: 200 SRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYET 259
              L  +     +  PD  ++  +++G+ KEG+V +A   F EMV+R    P   + Y +
Sbjct: 202 DDLLRMMAEGGAVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQR--GIPPDFVTYSS 259

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG 319
            +  L + + +D+A  FLR M  +   P    ++N +           AV+++  M    
Sbjct: 260 VVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQ- 318

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMI------------ 367
            +++P+++ +N ++G LC    +      FD M   G  PD  +YN++            
Sbjct: 319 -SILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVD 377

Query: 368 -------------------FECLIKN----KRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
                              F  LIK       + +    F+EM  +  +P  L   T I 
Sbjct: 378 MTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIA 437

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
            L    + + A+E +N +++ G+ P + + + L+ G    G L   +    E++N
Sbjct: 438 ALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMN 492



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/367 (20%), Positives = 152/367 (41%), Gaps = 44/367 (11%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLN 207
           T+A + D    A + + A+  F  +   G+  D++  N LL   C +  +T  AL+  L+
Sbjct: 113 TYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFC-EAKRTDEALDILLH 171

Query: 208 RVKKI-VDPDGDSFAILL-------------------------------------EGWEK 229
           R  ++   PD  S++ILL                                     +G+ K
Sbjct: 172 RTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNTVIDGFFK 231

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
           EG+V +A   F EMV+R    P   + Y + +  L + + +D+A  FLR M  +   P  
Sbjct: 232 EGDVNKACDLFKEMVQR--GIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNN 289

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
             ++N +           AV+++  M     +++P+++ +N ++G LC    +      F
Sbjct: 290 WTYNNLIYGYSSTGQWKEAVRVFKEMRRQ--SILPDVVTFNMLMGSLCKYGKIKEARDVF 347

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 409
           D M   G  PD  +YN++         + ++   F  M+ +   P        I    + 
Sbjct: 348 DTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANC 407

Query: 410 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTM 469
              + A+ I+N + ++G+ P   +   ++  L  +G++ D      +M+++ +   +   
Sbjct: 408 GMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAY 467

Query: 470 HKLKKAF 476
           H L + F
Sbjct: 468 HCLIQGF 474



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 75/368 (20%), Positives = 154/368 (41%), Gaps = 9/368 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +N ++      G++++     + M+   +L  + TF  +  S C  GK  EA   FD 
Sbjct: 290 WTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDT 349

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M+M G   DV + N +L+    +         F   +   + P   +F +L++ +   G 
Sbjct: 350 MAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGM 409

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +++A   F EM  R      +VL Y T +  L R  ++D+A++    M  +   P    +
Sbjct: 410 LDKAMIIFNEM--RDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAY 467

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
              +           A +L   ++  G +L  ++++++++I  LC    V +    FD  
Sbjct: 468 HCLIQGFCTHGSLLKAKELISEIMNNGMHL--DIVLFSSIINNLCKLGRVMDAQNIFDLT 525

Query: 353 VFHGAFPDSLTYNMIFE--CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
           V  G  P ++ Y+M+ +  CL+   ++ +  + F  M+    +P  +   T +       
Sbjct: 526 VNVGLHPTAVVYSMLMDGYCLV--GKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIG 583

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 470
             +  + ++  +L+ GI P     N ++ GL   GR    +    EM    I + + T  
Sbjct: 584 RIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYS 643

Query: 471 KLKKAFYN 478
            + +  + 
Sbjct: 644 IVLRGLFK 651



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 127/321 (39%), Gaps = 52/321 (16%)

Query: 185 VNSLLSAICRQENQTS------RALEFLNRVK------KIVDPDGDSFAILLEGWEKEGN 232
           +N  L+AI R  +  +       A+   NR        +++ P   ++AIL++   +   
Sbjct: 67  LNGFLAAIARAPSSAACRSGPALAVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHR 126

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-NCFPTLKF 291
            E A   FG+++ R     + ++A    L      K+ DEAL  L     E  C P +  
Sbjct: 127 PELALAFFGQLL-RTGLRVDIIIA-NHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFS 184

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           +S  L  L     S  A  L  +M   G    P+++ YN VI       DV+     F +
Sbjct: 185 YSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNTVIDGFFKEGDVNKACDLFKE 244

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           MV  G  PD +TY+ +   L K + + + E F  +M+                       
Sbjct: 245 MVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMV----------------------- 281

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK 471
                         G+LP   + N L+ G  + G+  +  R  +EM  + IL   VT + 
Sbjct: 282 ------------NKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNM 329

Query: 472 LKKAF--YNESRSMRDIFDSL 490
           L  +   Y + +  RD+FD++
Sbjct: 330 LMGSLCKYGKIKEARDVFDTM 350



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 58/281 (20%), Positives = 112/281 (39%), Gaps = 5/281 (1%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G  L    ++ +++ L K GR     N   +    G+  +   ++ + D YC  GK ++A
Sbjct: 494 GMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKA 553

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
           +  FD M   G+E + V   +L++  C+          F   ++K + P    + I+++G
Sbjct: 554 LRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDG 613

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
             + G    A   F EM E       +   Y   L  L + +  DEA+   + ++  N  
Sbjct: 614 LFEAGRTVPAKVKFHEMTE--SGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVK 671

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346
             +   +  +  + +      A  L+  +   G  L+P ++ Y+ +I  L     V+   
Sbjct: 672 IDIITLNTMIAGMFQTRRVEEAKDLFASISRSG--LVPCVVTYSIMITNLIKEGLVEEAE 729

Query: 347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
             F  M   G  PDS   N +   L+K   +     +  ++
Sbjct: 730 DMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKI 770



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 63/290 (21%), Positives = 119/290 (41%), Gaps = 9/290 (3%)

Query: 109 QRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDE 165
           Q ++P  YA++ ++     +G   +    +  +  +G+ L +  F+SI ++ C  G+  +
Sbjct: 458 QGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRVMD 517

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A   FD+    G+    V  + L+   C           F   V   ++P+   +  L+ 
Sbjct: 518 AQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVN 577

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR-GKQVDEALKFLRVMKGEN 284
           G+ K G ++E    F EM+++    P  +L Y   +  L   G+ V   +KF  + +   
Sbjct: 578 GYCKIGRIDEGLSLFREMLQK-GIKPSTIL-YNIIIDGLFEAGRTVPAKVKFHEMTESGI 635

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
                 + S  L  L K      A+ L+  +  +  N+  ++I  N +I  +     V+ 
Sbjct: 636 AMNKCTY-SIVLRGLFKNRCFDEAIFLFKELRAM--NVKIDIITLNTMIAGMFQTRRVEE 692

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
               F  +   G  P  +TY+++   LIK   V E E  F  M     +P
Sbjct: 693 AKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEP 742



 Score = 38.1 bits (87), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 58/271 (21%), Positives = 103/271 (38%), Gaps = 8/271 (2%)

Query: 43  HLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSY---DSPSSAV 99
           HLD    SS    +C++     + +I       G+ PT  +V+ +L   Y        A+
Sbjct: 496 HLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTA-VVYSMLMDGYCLVGKMEKAL 554

Query: 100 DFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSY 157
             F      G   +   +  +V+   K GR ++  +  R M + G+  S   +  I D  
Sbjct: 555 RVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGL 614

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG 217
             AG+   A + F  M+  G+  +    + +L  + +          F       V  D 
Sbjct: 615 FEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDI 674

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            +   ++ G  +   VEEA   F   + R    P  V+ Y   +  LI+   V+EA    
Sbjct: 675 ITLNTMIAGMFQTRRVEEAKDLFAS-ISRSGLVP-CVVTYSIMITNLIKEGLVEEAEDMF 732

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHA 308
             M+   C P  +  ++ +  L+K N+   A
Sbjct: 733 SSMQNAGCEPDSRLLNHVVRELLKKNEIVRA 763


>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 550

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 139/308 (45%), Gaps = 4/308 (1%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           + +I DS C   + ++A+  F  +   G+  +VV   +L++ +C        A    + +
Sbjct: 193 YNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMI 252

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
           K+ + P+  +++ LL+ + K G V EA + F EMV R   +P+ ++ Y + +  L    +
Sbjct: 253 KRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMV-RMSIDPD-IVTYSSLINGLCLHDR 310

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY 329
           +DEA +   +M  + CFP +  ++  ++   K       ++L+  M   G  L+ N + Y
Sbjct: 311 IDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRG--LVNNTVTY 368

Query: 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389
           N +I       DVD    FF QM   G  PD  TYN++   L  N  + +    F +M K
Sbjct: 369 NTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQK 428

Query: 390 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 449
           +E     +   T I  +    + E A  ++  +   G+ P   +   ++ GL   G   +
Sbjct: 429 SEMDLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLKGLKPDIVTYTTMMSGLCTKGLQHE 488

Query: 450 VRRFAEEM 457
           V     +M
Sbjct: 489 VEALYTKM 496



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 90/363 (24%), Positives = 170/363 (46%), Gaps = 8/363 (2%)

Query: 98  AVDFFRWAGRGQRL-SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFD 155
           A++ FR   + +   S   +N ++  + K  +++ + +  + M+  G+ + L TF  + +
Sbjct: 69  AINLFREMVKTRPFPSIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLYTFNIVIN 128

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VD 214
            +C   +   A+     M   G E D V + SL++  CR+ N+ S A+  ++++ +I   
Sbjct: 129 CFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRR-NRVSDAVSLVDKMVEIGYR 187

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           PD  ++  +++   K   V +A   F E + R    P +V+ Y   +  L    + ++A 
Sbjct: 188 PDIVAYNAIIDSLCKTRRVNDALDFFKE-IGRKGIRP-NVVTYTALVNGLCNSGRWNDAA 245

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
           + LR M      P +  +S  LD  VK      A ++++ MV +  +  P+++ Y+++I 
Sbjct: 246 RLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSID--PDIVTYSSLIN 303

Query: 335 LLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
            LC +D +D   + FD MV  G FPD ++YN +     K KRV +  K F +M +     
Sbjct: 304 GLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVN 363

Query: 395 TPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 454
             +   T I       + + A E ++ +   G+ P   + N LL GL + G L       
Sbjct: 364 NTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIF 423

Query: 455 EEM 457
           E+M
Sbjct: 424 EDM 426



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 71/333 (21%), Positives = 144/333 (43%), Gaps = 41/333 (12%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  F  +  +     KYD  +     M + G+  D+   N +++  C    Q S AL  
Sbjct: 84  SIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFC-CCFQVSLALSV 142

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L ++ K+  +PD  +   L+ G+ +   V +A     +MVE   + P+ ++AY   + +L
Sbjct: 143 LGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVE-IGYRPD-IVAYNAIIDSL 200

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
            + ++V++AL F + +  +                                      + P
Sbjct: 201 CKTRRVNDALDFFKEIGRKG-------------------------------------IRP 223

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           N++ Y A++  LCN+   ++  R    M+     P+ +TY+ + +  +KN +V E ++ F
Sbjct: 224 NVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIF 283

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
            EM++    P  +  ++ I  L   D  + A ++++ ++  G  P   S N L+ G    
Sbjct: 284 EEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKA 343

Query: 445 GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFY 477
            R+ D  +   +M  R ++   VT + L + F+
Sbjct: 344 KRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFF 376



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 97/232 (41%), Gaps = 4/232 (1%)

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL 322
           T +R  ++ +A+   R M     FP++  F+  L  +VK+      + L   M  +G  +
Sbjct: 59  TRLRDIKLHDAINLFREMVKTRPFPSIVDFNRLLSAIVKMKKYDVVISLGKKMEVLG--I 116

Query: 323 MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
             +L  +N VI   C    V        +M+  G  PD +T   +     +  RV +   
Sbjct: 117 RNDLYTFNIVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVS 176

Query: 383 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 442
              +M++  ++P  +     I  L        A++ +  I   GI P   +   L+ GL 
Sbjct: 177 LVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLC 236

Query: 443 NLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSM--RDIFDSLER 492
           N GR +D  R   +M+ R+I    +T   L  AF    + +  ++IF+ + R
Sbjct: 237 NSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVR 288



 Score = 41.6 bits (96), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 1/123 (0%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++N +++   K  R E      R M + G+++   T+ ++   +   G  D+A   F  M
Sbjct: 332 SYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQM 391

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              GV  D+   N LL  +C         + F +  K  +D D  ++  +++G  K G V
Sbjct: 392 DSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGKV 451

Query: 234 EEA 236
           E+A
Sbjct: 452 EDA 454



 Score = 40.4 bits (93), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 3/91 (3%)

Query: 111 LSPYAW--NLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAV 167
           +SP  W  N+++  L  NG  E+       M++  + L + T+ ++    C  GK ++A 
Sbjct: 396 VSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDAW 455

Query: 168 MSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198
             F  +S+ G++ D+V   +++S +C +  Q
Sbjct: 456 GLFCSLSLKGLKPDIVTYTTMMSGLCTKGLQ 486


>gi|242082131|ref|XP_002445834.1| hypothetical protein SORBIDRAFT_07g026590 [Sorghum bicolor]
 gi|241942184|gb|EES15329.1| hypothetical protein SORBIDRAFT_07g026590 [Sorghum bicolor]
          Length = 426

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 119/271 (43%), Gaps = 10/271 (3%)

Query: 129 FEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS 187
           F  +W+    M+  G+ LS  TF+++  SY  +   D+AV  F+ +   G  Q     N+
Sbjct: 127 FPHLWSLASDMRGLGLPLSPTTFSAVISSYGHSRLPDQAVEVFNRLPRFGCPQTTEVYNA 186

Query: 188 LLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
           LL A+C   N T  A + L R+ +K V PD  +F+ L++ W   G + EA     +M  R
Sbjct: 187 LLDALCANGNFTG-AYKLLRRMARKGVAPDRATFSTLVDSWCAAGKLNEAQAFLDDMASR 245

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
               P  V   +  +  L+R   ++EA  F   M  E   P +  F++  + L    D  
Sbjct: 246 GFRPP--VRGRDLLVDGLVRAGHLEEAKAFALRMTKEGILPDVATFNSLAEALCNAGDVD 303

Query: 307 HAVQLWDIMVGIGFNLMPNL---IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLT 363
            AV L       G  L P++    +Y A+I  LC      + F FF  M   G  P+   
Sbjct: 304 FAVALLADASSRG--LCPDISHTSLYAAIIKALCKAGRFADAFAFFGDMKMKGHPPNRPV 361

Query: 364 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
           Y M+ +  ++  R  E   +  EM +  + P
Sbjct: 362 YVMLVKMCVRGGRFVEAANYLVEMSEAGFTP 392



 Score = 41.6 bits (96), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 63/172 (36%), Gaps = 5/172 (2%)

Query: 310 QLWDI---MVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM 366
            LW +   M G+G  L P    ++AVI    ++   D     F+++   G    +  YN 
Sbjct: 129 HLWSLASDMRGLGLPLSPT--TFSAVISSYGHSRLPDQAVEVFNRLPRFGCPQTTEVYNA 186

Query: 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 426
           + + L  N       K    M +    P     +T +     A +   A    + +   G
Sbjct: 187 LLDALCANGNFTGAYKLLRRMARKGVAPDRATFSTLVDSWCAAGKLNEAQAFLDDMASRG 246

Query: 427 ILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 478
             P     + L+ GL   G L + + FA  M    IL    T + L +A  N
Sbjct: 247 FRPPVRGRDLLVDGLVRAGHLEEAKAFALRMTKEGILPDVATFNSLAEALCN 298


>gi|356499079|ref|XP_003518371.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Glycine max]
          Length = 615

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 139/313 (44%), Gaps = 8/313 (2%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ---ENQTSRALEFL 206
           F ++  +Y  +G   +AV  F +++ +     +    +LL  + R    E + S AL +L
Sbjct: 179 FDALISAYVDSGFTPDAVQCFRLVTKNKFPVPIRGCENLLRRVVRLRPVEIERSWAL-YL 237

Query: 207 NRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
             +     P    F +L+ G+ K G+V  A   F E+ +R    P  V+++ T +    +
Sbjct: 238 EVLDSGYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKR-GLRPT-VVSFNTLISGCCK 295

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNL 326
              V+E  +   VM+ E   P +  FS  ++ L K         L+D M G G  L+PN 
Sbjct: 296 SGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRG--LVPNG 353

Query: 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 386
           + +  +I   C    VD   + F  M+  G  PD +TYN +   L K   + E  +  +E
Sbjct: 354 VTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNE 413

Query: 387 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 446
           M  +  +P  +   T I       + E A+EI   ++E GI   + +   L+ GL   GR
Sbjct: 414 MTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREGR 473

Query: 447 LSDVRRFAEEMLN 459
           + D  R   +ML+
Sbjct: 474 VHDAGRMLTDMLS 486



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 130/308 (42%), Gaps = 4/308 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           +F ++    C +G  +E      VM   GV  DV   ++L++ +C++      +L F   
Sbjct: 285 SFNTLISGCCKSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEM 344

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
             + + P+G +F  L++G  K G V+ A K F  M+ +    P+ ++ Y   +  L +  
Sbjct: 345 CGRGLVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQ-GVRPD-LVTYNALINGLCKVG 402

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
            + EA + +  M      P    F+  +D   K  D   A+++   MV  G  L  + + 
Sbjct: 403 DLKEARRLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIEL--DDVA 460

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           + A+I  LC    V +  R    M+  G  PD  TY M+ +C  K   V    K   EM 
Sbjct: 461 FTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFKLLKEMQ 520

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
            +   P  +     +  L    + + A  + + +L  G+ P + + N LL G    G   
Sbjct: 521 SDGHVPGVVTYNALMNGLCKQGQMKNAKMLLDAMLNVGVAPNDITYNILLDGHSKHGSSV 580

Query: 449 DVRRFAEE 456
           DV  F  E
Sbjct: 581 DVDIFNSE 588



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 133/317 (41%), Gaps = 42/317 (13%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-------------------- 146
           RG R +  ++N ++    K+G  E+ +    VM+ +GV                      
Sbjct: 277 RGLRPTVVSFNTLISGCCKSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDE 336

Query: 147 -------------LP---TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS 190
                        +P   TF ++ D  C  GK D A+ +F +M   GV  D+V  N+L++
Sbjct: 337 GSLLFDEMCGRGLVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALIN 396

Query: 191 AICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW 249
            +C+       A   +N +    + PD  +F  L++G  K+G++E A +    MVE  E 
Sbjct: 397 GLCKV-GDLKEARRLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVE--EG 453

Query: 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV 309
                +A+   +  L R  +V +A + L  M      P    ++  +D   K  D     
Sbjct: 454 IELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGF 513

Query: 310 QLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFE 369
           +L   M   G   +P ++ YNA++  LC    + N     D M+  G  P+ +TYN++ +
Sbjct: 514 KLLKEMQSDGH--VPGVVTYNALMNGLCKQGQMKNAKMLLDAMLNVGVAPNDITYNILLD 571

Query: 370 CLIKNKRVHEVEKFFHE 386
              K+    +V+ F  E
Sbjct: 572 GHSKHGSSVDVDIFNSE 588



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 105/235 (44%), Gaps = 7/235 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F    GRG   +   +  ++D   K G+ +      ++M   GV   L T+ ++ +  C 
Sbjct: 341 FDEMCGRGLVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCK 400

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGD 218
            G   EA    + M+  G++ D +   +L+   C+  +  S ALE   R V++ ++ D  
Sbjct: 401 VGDLKEARRLVNEMTASGLKPDKITFTTLIDGCCKDGDMES-ALEIKRRMVEEGIELDDV 459

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           +F  L+ G  +EG V +A +   +M+    + P+    Y   +    +   V    K L+
Sbjct: 460 AFTALISGLCREGRVHDAGRMLTDMLSA-GFKPDDP-TYTMVIDCFCKKGDVKMGFKLLK 517

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
            M+ +   P +  ++  ++ L K     +A  L D M+ +G  + PN I YN ++
Sbjct: 518 EMQSDGHVPGVVTYNALMNGLCKQGQMKNAKMLLDAMLNVG--VAPNDITYNILL 570


>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 139/293 (47%), Gaps = 7/293 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F     +G + +   +N+++DVL K G+  +  + + VM + G++ +L T+ S+ + +C 
Sbjct: 300 FNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCL 359

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD-PDGD 218
            G  + A   F  M   G E DV+    L++  C+  ++   A++  N + ++   PD  
Sbjct: 360 VGDLNSARELFVSMPSKGCEPDVICYTVLINGYCK-TSKVEEAMKLYNGMLQVGKRPDVK 418

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++  LL G  + G V +A K FG M  +    P  +  Y  FL  L +   + EA++   
Sbjct: 419 TYGALLTGLFQGGKVGDAKKLFGVM--KVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFN 476

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            +K  N    ++ F+  +D L K      A +L++ +      L P+++ YN +I   C 
Sbjct: 477 KLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLP--QEELQPDVVTYNIMIHEFCR 534

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
              V      F +M  +G  PD +TY  +     ++K++ +V +  H M++ +
Sbjct: 535 GGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVELLHMMVQRD 587



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 77/347 (22%), Positives = 155/347 (44%), Gaps = 42/347 (12%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++++++D L K+ R ++  +    MK  G+  ++ ++ S+   +C  GK++EA   F+ M
Sbjct: 244 SYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEM 303

Query: 174 SMHGVEQDVVAVNSLLSAICRQEN------------------------------------ 197
              GV+ +VV  N L+  +C++                                      
Sbjct: 304 VNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDL 363

Query: 198 QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
            ++R L F++   K  +PD   + +L+ G+ K   VEEA K +  M++     P+ V  Y
Sbjct: 364 NSAREL-FVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQ-VGKRPD-VKTY 420

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317
              L  L +G +V +A K   VMK       L  +   L+ L K      A++L++ +  
Sbjct: 421 GALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLK- 479

Query: 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
             +N+  ++  +N +I  LC    ++  +  F+++      PD +TYN++     +  +V
Sbjct: 480 -SYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQV 538

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 424
            +    F +M KN   P  +  AT I    ++ + E  +E+ + +++
Sbjct: 539 VKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVELLHMMVQ 585



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 80/370 (21%), Positives = 159/370 (42%), Gaps = 16/370 (4%)

Query: 94  SPSSAVDFFRWAGRGQRLSPYA-WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFA 151
           + + A  FF          P + +  ++  L K   + Q++     M+  G+     T  
Sbjct: 76  TATQAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLN 135

Query: 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK 211
            + +  C   +  E +     +   G   D+V   +L+  +C  E++ S+A     R++K
Sbjct: 136 ILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLC-MEHRISKAALLFTRMQK 194

Query: 212 I-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE-----RFEWNPEHVLAYETFLITLI 265
           +   P+  ++  L++G  + GN+  A K   EM+         + P  V++Y   +  L 
Sbjct: 195 LGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPV-VISYSIIIDALC 253

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN 325
           + ++ DEA      MK +   PT+  +++ +           A +L++ MV  G  + PN
Sbjct: 254 KDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQG--VQPN 311

Query: 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFE--CLIKNKRVHEVEKF 383
           ++ +N +I +LC    V       + M+  G  P+ LTYN + E  CL+ +  ++   + 
Sbjct: 312 VVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGD--LNSAREL 369

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
           F  M     +P  +     I       + E A++++N +L+ G  P   +   LL GL  
Sbjct: 370 FVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQ 429

Query: 444 LGRLSDVRRF 453
            G++ D ++ 
Sbjct: 430 GGKVGDAKKL 439



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/312 (21%), Positives = 124/312 (39%), Gaps = 35/312 (11%)

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206
           L +F  +         Y +    ++ M + G+  D   +N LL+ +C   N+    L  +
Sbjct: 96  LSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLNCLC-NVNRVGEGLAVM 154

Query: 207 NRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
             + ++   PD  ++  L++G   E  + +A   F  M ++    P + + Y T +  L 
Sbjct: 155 AGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRM-QKLGCTP-NAITYGTLMKGLC 212

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN 325
           R   +  ALK  + M                     LNDS+    L+      G N  P 
Sbjct: 213 RTGNISIALKLHQEM---------------------LNDSS----LY------GINFKPV 241

Query: 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 385
           +I Y+ +I  LC +   D     F++M   G  P  ++Y  +        +  E ++ F+
Sbjct: 242 VISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFN 301

Query: 386 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
           EM+    QP  +     I +L    +   A ++   +++ GI+P   + N L+ G   +G
Sbjct: 302 EMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVG 361

Query: 446 RLSDVRRFAEEM 457
            L+  R     M
Sbjct: 362 DLNSARELFVSM 373



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/287 (20%), Positives = 115/287 (40%), Gaps = 12/287 (4%)

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           P   SF  LL G  K  +  +    + +M  R              L  L    +V E L
Sbjct: 94  PPLSSFTHLLSGLAKIKHYSQVFYLYNQM--RLSGISPDCCTLNILLNCLCNVNRVGEGL 151

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
             +  +      P +  ++  +  L   +  + A  L+  M  +G    PN I Y  ++ 
Sbjct: 152 AVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLG--CTPNAITYGTLMK 209

Query: 335 LLCNNDDVDNVFRFFDQMVFHGAF------PDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
            LC   ++    +   +M+   +       P  ++Y++I + L K++R  E    F EM 
Sbjct: 210 GLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMK 269

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
                PT ++  + I       + E A  ++N ++  G+ P   + N L+  L   G++ 
Sbjct: 270 VQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVI 329

Query: 449 DVRRFAEEMLNRRILIYEVTMHKLKKAF--YNESRSMRDIFDSLERR 493
           + +   E M+ R I+   +T + L + F    +  S R++F S+  +
Sbjct: 330 EAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSK 376



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 63/155 (40%), Gaps = 2/155 (1%)

Query: 305 STHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTY 364
           +T A Q + +M  +  N  P L  +  ++  L        VF  ++QM   G  PD  T 
Sbjct: 77  ATQAFQFFHLM--MYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTL 134

Query: 365 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 424
           N++  CL    RV E       +++  + P  +   T I  L        A  ++  + +
Sbjct: 135 NILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQK 194

Query: 425 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
            G  P   +   L+ GL   G +S   +  +EMLN
Sbjct: 195 LGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLN 229


>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Brachypodium distachyon]
          Length = 966

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 65/304 (21%), Positives = 131/304 (43%), Gaps = 16/304 (5%)

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG 217
           CG GK+++A      M   G   D      +++ +C+ +      L F    +  V+PD 
Sbjct: 428 CGVGKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDV 487

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            ++ IL++ + K G +E+A   F EM  R      +V+ Y   L   ++ KQ+ +A    
Sbjct: 488 YTYTILIDSFCKAGLIEQARSWFDEM--RSVGCSPNVVTYTALLHAYLKSKQLIQAHDIF 545

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFN--------------LM 323
             M    C+P    +S  +D L K  +   A ++++ ++G   N              + 
Sbjct: 546 HRMVDAACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIA 605

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           PN++ Y A+I  LC    V +     D M+  G  P+ + Y+ + +   K  ++   ++ 
Sbjct: 606 PNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEV 665

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
           F  M K  + P+     + I  +      ++A+++ + +L +   P   +   ++ GL  
Sbjct: 666 FLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSK 725

Query: 444 LGRL 447
           +G +
Sbjct: 726 VGEI 729



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 116/261 (44%), Gaps = 22/261 (8%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFD--VMSMHGVEQD--------------VVAVNSLLSAI 192
           T++++ D  C AG+  +A   ++  + +   VE D              VV   +L+  +
Sbjct: 559 TYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTYGALIDGL 618

Query: 193 CRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           C+ + + S A E L+  +    +P+   +  L++G+ K G ++ A + F  M  +  + P
Sbjct: 619 CKAQ-KVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMT-KCGYLP 676

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
             V  Y + +  + +  ++D A+K L  M  ++C P +  ++  +D L K+ +   A+ L
Sbjct: 677 S-VHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALNL 735

Query: 312 WDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECL 371
             +M   G +  PN++ Y A+I  L      D   + F QM   G  P+ +TY ++    
Sbjct: 736 LSLMEEKGCS--PNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLINHC 793

Query: 372 IKNKRVHEVEKFFHEMIKNEW 392
                + E      EM    W
Sbjct: 794 CAAGLLDEAHLLLDEMKHTHW 814



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 77/395 (19%), Positives = 147/395 (37%), Gaps = 51/395 (12%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEA 166
           G R S   +N +V VL   G+ E  +   + M   G  +   T      + C  G++ +A
Sbjct: 199 GYRPSAVTYNALVQVLASAGQVEMGFRVQKEMSASGFCMDRSTIGYFAQALCKVGRWADA 258

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV----------------- 209
           +   +++       D V    ++S +  + +  + A+ FL+R+                 
Sbjct: 259 L---NMLEKEDFNLDTVLCTQMISGL-MEASLFNEAMSFLHRMRCNSCIPNVVTYRTLLS 314

Query: 210 -----------KKIVD--------PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
                      K+I++        P+   F  L+ G+   G+   A K F  M      +
Sbjct: 315 GFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNAGDYAYAYKLFNRMTTC--GS 372

Query: 251 PEHVLAYETFLITLIRGKQV------DEALKFLRVMKGENCFPTLKFFSNALDILVKLND 304
           P   +AY  F+ ++   +++      D   K    M   +C       +N    L  +  
Sbjct: 373 PPGYVAYNIFIGSICGQEELPNAELLDLVEKVYEEMLAASCVLNKVNTANFSRCLCGVGK 432

Query: 305 STHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTY 364
              A Q+   M+  GF  +P+   Y  VI  LC    V+  F  F +M   G  PD  TY
Sbjct: 433 FEKAFQILKEMMRKGF--VPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTY 490

Query: 365 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 424
            ++ +   K   + +   +F EM      P  +     +   L + +   A +I++ +++
Sbjct: 491 TILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVD 550

Query: 425 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
               P   + + L+ GL   G +       E+++ 
Sbjct: 551 AACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIG 585



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/275 (20%), Positives = 114/275 (41%), Gaps = 6/275 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCG 159
           F R    G   S + +  ++D + K+GR +     +  M  D    ++ T+ ++ D    
Sbjct: 666 FLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSK 725

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
            G+ ++A+    +M   G   +VV   +L+  + +     +    F     K   P+  +
Sbjct: 726 VGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVT 785

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           + +L+      G ++EA+    EM +   W P+H+  Y   +      K+   +L  L  
Sbjct: 786 YRVLINHCCAAGLLDEAHLLLDEM-KHTHW-PKHLQGYHCAVQGF--SKKFIASLGLLEE 841

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL-MPNLIMYNAVIGLLCN 338
           M+     P    +   +D   K      A++L   +V +  +L M +  MY ++I  LC 
Sbjct: 842 MESHETVPIAPVYGMLIDSFSKAGRLETALELHKELVEVSSSLNMTSTGMYASLIQALCL 901

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 373
              V+  F  + +M   G  PD + +  + + LI+
Sbjct: 902 ASQVEEAFTLYTEMTRKGIVPDLIVFVSLVKGLIE 936


>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
          Length = 333

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 144/320 (45%), Gaps = 10/320 (3%)

Query: 142 DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSR 201
           DGV+    +  +   +C AG   +A+   D M   G   DVV  N+LL+ +C+ E +   
Sbjct: 15  DGVI----YTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCK-ERRLLD 69

Query: 202 ALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF 260
           A   LN ++ + V PD  +F  L+ G+  EG +++A + F  M+ +    P+ ++ Y T 
Sbjct: 70  AEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQ-RLRPD-IVTYNTL 127

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF 320
           +  + R   +D+A      M     FP    +S  +D   +      A    D M+  G 
Sbjct: 128 IDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKG- 186

Query: 321 NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEV 380
            ++PN++ YN++I   C + +V    +F  +M+ +   PD +TYN +    IK  ++H+ 
Sbjct: 187 -ILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDA 245

Query: 381 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 440
            K  + M K + QP  +     I         + A  I+  +   GI P   +   ++ G
Sbjct: 246 FKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMING 305

Query: 441 LRNLGRLSDVRRFAEEMLNR 460
               G   +  +  +EML R
Sbjct: 306 HVTAGNSKEAFQLHDEMLQR 325



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 129/317 (40%), Gaps = 42/317 (13%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N +++ L K  R       +  M+E GV   L TF ++   YC  GK D+A+  FD M
Sbjct: 53  TYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTM 112

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
               +  D+V  N+L+  +CRQ                                   G++
Sbjct: 113 LNQRLRPDIVTYNTLIDGMCRQ-----------------------------------GDL 137

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           ++AN  + +M  R E  P HV  Y   + +     QV++A  FL  M  +   P +  ++
Sbjct: 138 DKANDLWDDMHSR-EIFPNHV-TYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYN 195

Query: 294 NALDILVKLNDSTHAVQ-LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           + +    +  + +   + L  +MV     + P+LI YN +I      D + + F+  + M
Sbjct: 196 SIIKGYCRSGNVSKGQKFLQKMMVN---KVSPDLITYNTLIHGYIKEDKMHDAFKLLNMM 252

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
                 PD +TYNM+      +  V E    F +M     +P      + I   + A   
Sbjct: 253 EKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNS 312

Query: 413 EIAIEIWNYILENGILP 429
           + A ++ + +L+ G  P
Sbjct: 313 KEAFQLHDEMLQRGFAP 329



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 119/283 (42%), Gaps = 39/283 (13%)

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFL------------- 261
           PDG  + +++ G+ + G + +A +   EMV      P+ V+ Y T L             
Sbjct: 14  PDGVIYTMVIGGFCRAGLMSDALRVRDEMVG-CGCLPD-VVTYNTLLNGLCKERRLLDAE 71

Query: 262 ------------------ITLIRG----KQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299
                              TLI G     ++D+AL+    M  +   P +  ++  +D +
Sbjct: 72  GLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGM 131

Query: 300 VKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFP 359
            +  D   A  LWD M      + PN + Y+ +I   C    V++ F F D+M+  G  P
Sbjct: 132 CRQGDLDKANDLWDDMH--SREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILP 189

Query: 360 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 419
           + +TYN I +   ++  V + +KF  +M+ N+  P  +   T I   +  D+   A ++ 
Sbjct: 190 NIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLL 249

Query: 420 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
           N + +  + P   + N L+ G    G + +     E+M  + I
Sbjct: 250 NMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGI 292



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 78/172 (45%), Gaps = 1/172 (0%)

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
           F L+P+ ++Y  VIG  C    + +  R  D+MV  G  PD +TYN +   L K +R+ +
Sbjct: 10  FGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLD 69

Query: 380 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 439
            E   +EM +    P      T I       + + A+++++ +L   + P   + N L+ 
Sbjct: 70  AEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLID 129

Query: 440 GLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLE 491
           G+   G L       ++M +R I    VT   L  + + E   + D F  L+
Sbjct: 130 GMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDS-HCEKGQVEDAFGFLD 180



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/244 (22%), Positives = 103/244 (42%), Gaps = 4/244 (1%)

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
           F   P+ V+ Y   +    R   + +AL+    M G  C P +  ++  L+ L K     
Sbjct: 10  FGLVPDGVI-YTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLL 68

Query: 307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM 366
            A  L + M   G  + P+L  +  +I   C    +D   + FD M+     PD +TYN 
Sbjct: 69  DAEGLLNEMRERG--VPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNT 126

Query: 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 426
           + + + +   + +    + +M   E  P  +  +  I    +  + E A    + ++  G
Sbjct: 127 LIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKG 186

Query: 427 ILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDI 486
           ILP   + N ++ G    G +S  ++F ++M+  ++    +T + L   +  E + M D 
Sbjct: 187 ILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDK-MHDA 245

Query: 487 FDSL 490
           F  L
Sbjct: 246 FKLL 249


>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Glycine max]
          Length = 747

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 148/338 (43%), Gaps = 7/338 (2%)

Query: 95  PSSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFAS 152
           P  A+  F+   G+G R S   +N ++  L + G        +  M E+G L ++ T+  
Sbjct: 346 PDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYNL 405

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KK 211
           + +  C  G   +A    D     G   D+   N+L+   C+Q    S A E +NR+  +
Sbjct: 406 VINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDS-ATEMVNRMWSQ 464

Query: 212 IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD 271
            + PD  ++  LL G  K G  EE  + F  M E+    P +++ Y   + +L + K+V+
Sbjct: 465 GMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEK-GCTP-NIITYNIIVDSLCKAKKVN 522

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA 331
           EA+  L  MK +   P +  F        K+ D   A QL+  M    +++      YN 
Sbjct: 523 EAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQLFRRMEK-QYDVCHTTATYNI 581

Query: 332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
           ++       +++   + F  M   G  PD+ TY ++ +   K   + +  KF  E ++  
Sbjct: 582 IVSAFSEQLNMNMAMKLFSVMKNSGCDPDNYTYRVVIDGFCKMGNITQGYKFLLENMEKR 641

Query: 392 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
           + P+       +  L   D+   A+ I + +L+ GI+P
Sbjct: 642 FIPSLTTFGRVLNCLCVKDKVHEAVGIIHLMLQKGIVP 679



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 88/381 (23%), Positives = 157/381 (41%), Gaps = 18/381 (4%)

Query: 115 AWNLMVDVLGKNGR-FEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV- 172
           A+N +V VL K G  FE      +V+K     +L TF       C  G  D AV +  V 
Sbjct: 218 AFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQGLCREGALDRAVRNSRVV 277

Query: 173 --------MSMHGVEQDVVAVNSLLSAICRQE--NQTSRALEFLNRVKKIVDPDGDSFAI 222
                   M   G E D +  NS++   C++      +R L+  + V K   PD  ++  
Sbjct: 278 EAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLK--DAVFKGFKPDEFTYCS 335

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+ G+ K+G+ + A   F + + +    P  VL Y T +  L +   +  AL+ +  M  
Sbjct: 336 LINGFCKDGDPDRAMAVFKDGLGK-GLRPSIVL-YNTLIKGLSQQGLILPALQLMNEMAE 393

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
             C P +  ++  ++ L K+   + A  L D  +  G    P++  YN +I   C    +
Sbjct: 394 NGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKG--CPPDIFTYNTLIDGYCKQLKL 451

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
           D+     ++M   G  PD +TYN +   L K  +  EV + F  M +    P  +     
Sbjct: 452 DSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNII 511

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
           +  L  A +   A+++   +   G+ P   S   L  G   +G +    +    M  +  
Sbjct: 512 VDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQLFRRMEKQYD 571

Query: 463 LIYEVTMHKLKKAFYNESRSM 483
           + +    + +  + ++E  +M
Sbjct: 572 VCHTTATYNIIVSAFSEQLNM 592



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 96/410 (23%), Positives = 173/410 (42%), Gaps = 33/410 (8%)

Query: 87  VLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG--- 143
           +++  Y + +  V + R   RG +   Y + + +    K  R       +R M E G   
Sbjct: 121 LVEFGYHNQAHKV-YMRMRDRGVQSDVYTYTIRIKSFCKTARPYAALRLLRNMPELGCDS 179

Query: 144 --VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSR 201
             V      A ++DS    G++D A   FD M    +  DVVA N L+  +C++      
Sbjct: 180 NAVAYCTVVAGLYDS----GEHDHARELFDEMLARCLCPDVVAFNKLVHVLCKK-GLVFE 234

Query: 202 ALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV------ 254
           +   L +V K+ V P+  +F I ++G  +EG ++ A +    +VE  E+  + V      
Sbjct: 235 SERLLGKVLKRGVCPNLFTFNIFVQGLCREGALDRAVRN-SRVVEAEEYLRKMVNGGFEP 293

Query: 255 --LAYETFLITLIRGKQVDEALKFLR--VMKGENCFPTLKF-FSNALDILVKLNDSTHAV 309
             L Y + +    +   V +A + L+  V KG   F   +F + + ++   K  D   A+
Sbjct: 294 DDLTYNSIIDGYCKKGMVQDANRVLKDAVFKG---FKPDEFTYCSLINGFCKDGDPDRAM 350

Query: 310 QLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFE 369
            ++    G+G  L P++++YN +I  L     +    +  ++M  +G  P+  TYN++  
Sbjct: 351 AVFKD--GLGKGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYNLVIN 408

Query: 370 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
            L K   V +      + I     P      T I       + + A E+ N +   G+ P
Sbjct: 409 GLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTP 468

Query: 430 LEASANELLVGLRNLGRLSDV----RRFAEEMLNRRILIYEVTMHKLKKA 475
              + N LL GL   G+  +V    +   E+     I+ Y + +  L KA
Sbjct: 469 DVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVDSLCKA 518



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 100/430 (23%), Positives = 173/430 (40%), Gaps = 57/430 (13%)

Query: 81  PDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRV 138
           P  V  V+++  D P  A++ F  A    G + +   +  +V  LG +G FE+M   +  
Sbjct: 7   PKHVAAVVKIQTD-PLKALEMFNSAKSEDGFKHTASTYKCIVQKLGHHGEFEEMEKLLSE 65

Query: 139 MKE--DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM-------SMH------------- 176
           M+E  +  L    +     +Y   GK  EAV +F+ M       S+H             
Sbjct: 66  MRENVNNALLEGAYIEAMKNYGRKGKVQEAVDTFERMDFYNCDPSVHSHNAIMNILVEFG 125

Query: 177 ---------------GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSF 220
                          GV+ DV      + + C+     + AL  L  + ++  D +  ++
Sbjct: 126 YHNQAHKVYMRMRDRGVQSDVYTYTIRIKSFCKTARPYA-ALRLLRNMPELGCDSNAVAY 184

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL-RV 279
             ++ G    G  + A + F EM+ R    P+ V+A+   +  L +   V E+ + L +V
Sbjct: 185 CTVVAGLYDSGEHDHARELFDEMLARC-LCPD-VVAFNKLVHVLCKKGLVFESERLLGKV 242

Query: 280 MKGENCFPTLKFFS---------NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYN 330
           +K   C P L  F+          ALD  V+ +    A +    MV  GF   P+ + YN
Sbjct: 243 LKRGVC-PNLFTFNIFVQGLCREGALDRAVRNSRVVEAEEYLRKMVNGGFE--PDDLTYN 299

Query: 331 AVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 390
           ++I   C    V +  R     VF G  PD  TY  +     K+         F + +  
Sbjct: 300 SIIDGYCKKGMVQDANRVLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGK 359

Query: 391 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 450
             +P+ +   T I  L        A+++ N + ENG LP   + N ++ GL  +G +SD 
Sbjct: 360 GLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDA 419

Query: 451 RRFAEEMLNR 460
               ++ + +
Sbjct: 420 SHLVDDAIAK 429



 Score = 43.5 bits (101), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 71/359 (19%), Positives = 127/359 (35%), Gaps = 54/359 (15%)

Query: 189 LSAICRQENQTSRALEFLNRVKKIVDPDG-----DSFAILLEGWEKEGNVEEANKTFGEM 243
           ++A+ + +    +ALE  N  K     DG      ++  +++     G  EE  K   EM
Sbjct: 10  VAAVVKIQTDPLKALEMFNSAK---SEDGFKHTASTYKCIVQKLGHHGEFEEMEKLLSEM 66

Query: 244 VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303
            E    N     AY   +    R  +V EA+     M   NC P++   +  ++ILV+  
Sbjct: 67  RENVN-NALLEGAYIEAMKNYGRKGKVQEAVDTFERMDFYNCDPSVHSHNAIMNILVEFG 125

Query: 304 DSTHAVQLWDIMVGIGFNL---------------------------MP------NLIMYN 330
               A +++  M   G                              MP      N + Y 
Sbjct: 126 YHNQAHKVYMRMRDRGVQSDVYTYTIRIKSFCKTARPYAALRLLRNMPELGCDSNAVAYC 185

Query: 331 AVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 390
            V+  L ++ + D+    FD+M+     PD + +N +   L K   V E E+   +++K 
Sbjct: 186 TVVAGLYDSGEHDHARELFDEMLARCLCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKR 245

Query: 391 EWQPTPLNCATAITMLLDADEPEIAI---------EIWNYILENGILPLEASANELLVGL 441
              P        +  L      + A+         E    ++  G  P + + N ++ G 
Sbjct: 246 GVCPNLFTFNIFVQGLCREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGY 305

Query: 442 RNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES---RSMRDIFDSLERRCKTS 497
              G + D  R  ++ + +     E T   L   F  +    R+M    D L +  + S
Sbjct: 306 CKKGMVQDANRVLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPS 364


>gi|125559009|gb|EAZ04545.1| hypothetical protein OsI_26694 [Oryza sativa Indica Group]
          Length = 784

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 158/370 (42%), Gaps = 8/370 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG-AGKYDEAVMSFDV 172
           A+  +V    + GRF       R M + GV  ++ T+  +   Y   A  + E V     
Sbjct: 174 AYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVELVAS 233

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEG 231
           M  HGV  D    N+L+S  CR+      A +  + +K    +PD  +F  LL+ + K  
Sbjct: 234 MKEHGVAPDRYTYNTLISC-CRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKAR 292

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
             +EA +   EM ER    P  V+ Y + + + ++   +++A+   + M+ +   P +  
Sbjct: 293 RHDEAIEVIQEM-ERVGC-PPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGIKPDVVT 350

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           ++  +  L +      A+  +D MV  G    PNL  YNA+I +         +   FD+
Sbjct: 351 YTTLISGLDRAGKIDAAIVEYDEMVRNGCK--PNLCTYNALIKMHGVRGKFPEMMAVFDE 408

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           +   G  PD +T+N +     +N    EV   F EM K  + P      + I+       
Sbjct: 409 LRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGL 468

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK 471
            ++A++I+  ++E GI P  ++ N +L  L   GR     +   EM  R     E +   
Sbjct: 469 FDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSS 528

Query: 472 LKKAFYNESR 481
           L  A+ N  R
Sbjct: 529 LLHAYANAKR 538



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/347 (20%), Positives = 143/347 (41%), Gaps = 13/347 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           WN ++ V G+NG   ++    + MK+ G +    T+ S+  SY   G +D A+  +  M 
Sbjct: 421 WNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMM 480

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G+  DV   N++LSA+ R          F    ++   PD  S++ LL  +     ++
Sbjct: 481 EAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLD 540

Query: 235 E----ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           +    ++  + E +E   W        +T ++   +   + EA K    ++ + C   + 
Sbjct: 541 KMKALSDDIYSERIEPHNW------LVKTLVLVNSKVNNLAEAEKAFLELRQKRCSLDIN 594

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
             +  + I  K        ++  +M     NL  +   YN+++ +     D +       
Sbjct: 595 VLNAMVSIYGKNRMVRKVEKILSLMKESAINL--SAATYNSLMHMYSRLGDCEKCENILT 652

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
           ++   G  PD  +YN +     +  ++ E  + F EM  +  +P  +     +   +   
Sbjct: 653 EIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNS 712

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
             E AIE+  Y++  G  P E + N ++ G    G+L+D + F   +
Sbjct: 713 MFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKLTDAKIFVSNL 759



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/283 (21%), Positives = 118/283 (41%), Gaps = 7/283 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N ++    +   +++       MK  G      TF S+ D Y  A ++DEA+     
Sbjct: 244 YTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQE 303

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEG 231
           M   G    VV  NSL+S+  + +    +A+     ++ K + PD  ++  L+ G ++ G
Sbjct: 304 MERVGCPPSVVTYNSLISSYVK-DGLLEQAVALKQEMEVKGIKPDVVTYTTLISGLDRAG 362

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            ++ A   + EMV R    P          +  +RGK   E +     ++     P +  
Sbjct: 363 KIDAAIVEYDEMV-RNGCKPNLCTYNALIKMHGVRGK-FPEMMAVFDELRSAGFVPDIVT 420

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           ++  L +  +    +    ++  M   G+  +P    Y ++I         D   + + +
Sbjct: 421 WNTLLAVFGQNGLDSEVSGVFKEMKKAGY--IPERDTYVSLISSYSRCGLFDLAMQIYKR 478

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
           M+  G +PD  TYN +   L +  R  + EK F EM + + +P
Sbjct: 479 MMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKP 521



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 57/280 (20%), Positives = 116/280 (41%), Gaps = 5/280 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++DV GK  R ++    ++ M+  G   S+ T+ S+  SY   G  ++AV     M 
Sbjct: 281 FNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEME 340

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
           + G++ DVV   +L+S + R     +  +E+   V+    P+  ++  L++     G   
Sbjct: 341 VKGIKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFP 400

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           E    F E+  R       ++ + T L    +     E     + MK     P    + +
Sbjct: 401 EMMAVFDEL--RSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVS 458

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
            +    +      A+Q++  M+  G  + P++  YNAV+  L      +   + F +M  
Sbjct: 459 LISSYSRCGLFDLAMQIYKRMMEAG--IYPDVSTYNAVLSALARGGRWEQAEKLFAEMEE 516

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
               PD  +Y+ +       KR+ +++    ++     +P
Sbjct: 517 RDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEP 556



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 51/265 (19%), Positives = 102/265 (38%), Gaps = 7/265 (2%)

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
           +HG  + V+    +L+   R   +  R  E    +     PD  ++  L+  + + G   
Sbjct: 132 LHG--EGVLHHPRVLATAIRVMARAGRLAEASALLDAAPGPDAGAYTALVSAFSRAGRFR 189

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIR-GKQVDEALKFLRVMKGENCFPTLKFFS 293
           +A   F  MV+        ++ Y   L    +      E ++ +  MK     P    ++
Sbjct: 190 DAVAVFRRMVD--SGVQPAIVTYNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYN 247

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +    +      A Q++D M   GF   P+ + +N+++ +       D       +M 
Sbjct: 248 TLISCCRRRALYKEAAQVFDEMKASGFE--PDKVTFNSLLDVYGKARRHDEAIEVIQEME 305

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G  P  +TYN +    +K+  + +      EM     +P  +   T I+ L  A + +
Sbjct: 306 RVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGIKPDVVTYTTLISGLDRAGKID 365

Query: 414 IAIEIWNYILENGILPLEASANELL 438
            AI  ++ ++ NG  P   + N L+
Sbjct: 366 AAIVEYDEMVRNGCKPNLCTYNALI 390



 Score = 46.6 bits (109), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 80/215 (37%), Gaps = 11/215 (5%)

Query: 248 EWNPEHVLAYETFLITLIR----GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303
           E + E VL +   L T IR      ++ EA   L    G    P    ++  +    +  
Sbjct: 131 ELHGEGVLHHPRVLATAIRVMARAGRLAEASALLDAAPG----PDAGAYTALVSAFSRAG 186

Query: 304 DSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND-DVDNVFRFFDQMVFHGAFPDSL 362
               AV ++  MV  G  + P ++ YN V+ +          V      M  HG  PD  
Sbjct: 187 RFRDAVAVFRRMVDSG--VQPAIVTYNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRY 244

Query: 363 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 422
           TYN +  C  +     E  + F EM  + ++P  +   + + +   A   + AIE+   +
Sbjct: 245 TYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEM 304

Query: 423 LENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
              G  P   + N L+      G L       +EM
Sbjct: 305 ERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEM 339


>gi|326513138|dbj|BAK06809.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 93/413 (22%), Positives = 172/413 (41%), Gaps = 40/413 (9%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCG-AGKYDE 165
           +G  L  + +N+++D L K+G  +Q +     MK+          +I     G AGK  +
Sbjct: 215 KGYMLDIFGYNMLLDALAKSGMVDQAYQVFEDMKQKYCEPDAYTYTILIRMSGRAGKASK 274

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICR-------------------QENQTSRALEF- 205
            +  FD M   G   +++A N+L+ A+ +                   Q NQ + ++   
Sbjct: 275 FLSFFDEMVSKGCALNLIAYNTLIEALGKNKMVDKVIFVLSKMIEGGCQPNQFTYSITLD 334

Query: 206 -------LNRVKKIVD-----PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH 253
                  L+R+ +++D      +   ++ L++   K G+V EA+  F +M   +E     
Sbjct: 335 ILAKEGQLHRLNEVLDICDRYMNKSIYSYLVKSLSKSGHVSEAHNVFCQMWNSYETGDRD 394

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
             A+ + L  L    +  EA+  L +M  +     +  ++     L KL   +    L+D
Sbjct: 395 --AFVSMLEVLCNSGKTLEAIDLLHMMPEKGVATDVGMYNMVFSALGKLKQVSFITSLFD 452

Query: 314 IMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 373
            M   G  + P+L  YN +I        VD     F+ M      PD +TYN +  CL K
Sbjct: 453 KMKANG--IAPDLFTYNIMISSYGRVGLVDKASGLFEDMNASSCKPDVITYNSLINCLGK 510

Query: 374 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 433
           N  + E    F EM +  + P     +  I     +++ ++A  ++  ++  G +P   +
Sbjct: 511 NGDLDEAHMLFKEMQEKGYGPDVFTYSILIECFGKSNKVDMACNLFLDMIAEGCIPNVVT 570

Query: 434 ANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDI 486
            N LL  L   G+ ++  +  E M  + +    +T   L++    ESRS R +
Sbjct: 571 YNILLDCLERHGKTAEAHKHYETMKQQGLTPDSITCSILERL---ESRSQRTV 620



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 129/290 (44%), Gaps = 22/290 (7%)

Query: 116 WNLMVDVLGKNGR-------FEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVM 168
           ++ +V  L K+G        F QMWN+      D       F S+ +  C +GK  EA+ 
Sbjct: 361 YSYLVKSLSKSGHVSEAHNVFCQMWNSYETGDRDA------FVSMLEVLCNSGKTLEAID 414

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGW 227
              +M   GV  DV   N + SA+ + + Q S      +++K   + PD  ++ I++  +
Sbjct: 415 LLHMMPEKGVATDVGMYNMVFSALGKLK-QVSFITSLFDKMKANGIAPDLFTYNIMISSY 473

Query: 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
            + G V++A+  F +M       P+ V+ Y + +  L +   +DEA    + M+ +   P
Sbjct: 474 GRVGLVDKASGLFEDM-NASSCKPD-VITYNSLINCLGKNGDLDEAHMLFKEMQEKGYGP 531

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFR 347
            +  +S  ++   K N    A  L+  M+  G   +PN++ YN ++  L  +       +
Sbjct: 532 DVFTYSILIECFGKSNKVDMACNLFLDMIAEG--CIPNVVTYNILLDCLERHGKTAEAHK 589

Query: 348 FFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
            ++ M   G  PDS+T +++     +++R   + K         W  +PL
Sbjct: 590 HYETMKQQGLTPDSITCSILERLESRSQRTVRIRK---PARATSWVVSPL 636


>gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 597

 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 139/293 (47%), Gaps = 7/293 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F     +G + +   +N+++DVL K G+  +  + + VM + G++ +L T+ S+ + +C 
Sbjct: 292 FNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCL 351

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD-PDGD 218
            G  + A   F  M   G E DV+    L++  C+  ++   A++  N + ++   PD  
Sbjct: 352 VGDLNSARELFVSMPSKGCEPDVICYTVLINGYCK-TSKVEEAMKLYNGMLQVGKRPDVK 410

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++  LL G  + G V +A K FG M  +    P  +  Y  FL  L +   + EA++   
Sbjct: 411 TYGALLTGLFQGGKVGDAKKLFGVM--KVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFN 468

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            +K  N    ++ F+  +D L K      A +L++ +      L P+++ YN +I   C 
Sbjct: 469 KLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLP--QEELQPDVVTYNIMIHEFCR 526

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
              V      F +M  +G  PD +TY  +     ++K++ +V +  H M++ +
Sbjct: 527 GGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVELLHMMVQRD 579



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 127/276 (46%), Gaps = 4/276 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF  + D  C  GK  EA    +VM   G+  +++  NSL+   C   +  S    F++ 
Sbjct: 306 TFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSM 365

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
             K  +PD   + +L+ G+ K   VEEA K +  M++     P+ V  Y   L  L +G 
Sbjct: 366 PSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQ-VGKRPD-VKTYGALLTGLFQGG 423

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           +V +A K   VMK       L  +   L+ L K      A++L++ +    +N+  ++  
Sbjct: 424 KVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLK--SYNIKLDIEC 481

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           +N +I  LC    ++  +  F+++      PD +TYN++     +  +V +    F +M 
Sbjct: 482 FNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKME 541

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 424
           KN   P  +  AT I    ++ + E  +E+ + +++
Sbjct: 542 KNGCTPDKITYATLIRGFFESKKLEKVVELLHMMVQ 577



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 76/348 (21%), Positives = 153/348 (43%), Gaps = 23/348 (6%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++  ++  L K   + Q++     M+  G+     T   + +  C   +  E +     +
Sbjct: 98  SFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGI 157

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGN 232
              G   D+V   +L+  +C  E++ S+A     R++K+   P+  ++  L++G  + GN
Sbjct: 158 LRRGYIPDIVTYTTLIKGLC-MEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGN 216

Query: 233 VEEANKTFGEMVE-----RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
           +  A K   EM+         + P  V++Y   +  L + ++ DEA      MK +   P
Sbjct: 217 ISIALKLHQEMLNDSSLYGINFKPV-VISYSIIIDALCKDRREDEARDLFEEMKVQGMTP 275

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFR 347
           T+  +++ +           A +L++ MV  G  + PN++ +N +I +LC    V     
Sbjct: 276 TVISYTSLM--------WEEAKRLFNEMVNQG--VQPNVVTFNVLIDVLCKEGKVIEAKD 325

Query: 348 FFDQMVFHGAFPDSLTYNMIFE--CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
             + M+  G  P+ LTYN + E  CL+ +  ++   + F  M     +P  +     I  
Sbjct: 326 LLEVMIQRGIVPNLLTYNSLIEGFCLVGD--LNSARELFVSMPSKGCEPDVICYTVLING 383

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 453
                + E A++++N +L+ G  P   +   LL GL   G++ D ++ 
Sbjct: 384 YCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKL 431



 Score = 47.0 bits (110), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 62/155 (40%), Gaps = 2/155 (1%)

Query: 305 STHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTY 364
           +  A Q + +M  +  N  P L  +  ++  L        VF  ++QM   G  PD  T 
Sbjct: 77  AIQAFQFFHLM--MYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTL 134

Query: 365 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 424
           N++  CL    RV E       +++  + P  +   T I  L        A  ++  + +
Sbjct: 135 NILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQK 194

Query: 425 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
            G  P   +   L+ GL   G +S   +  +EMLN
Sbjct: 195 LGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLN 229


>gi|242039015|ref|XP_002466902.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
 gi|241920756|gb|EER93900.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
          Length = 653

 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 101/435 (23%), Positives = 182/435 (41%), Gaps = 31/435 (7%)

Query: 76  GIIPTPDLVHEVLQLSYDSPS-----SAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRF 129
           G  P P + H +L+ +          SAV   +   GRG  L     NL+++ +   G  
Sbjct: 145 GCAPIPPMYHVILEAACSRGGGGGFRSAVRVLQDLHGRGCALDVGNCNLVLNAVCDQG-- 202

Query: 130 EQMWNAVRVMKEDGVLSLPT----------FASIFDSYCGAGKYDEAVMSFDVMSMHGVE 179
             +  A+R++++     LPT          + ++    C A ++       + M   G  
Sbjct: 203 GSVDEALRLLRD-----LPTSFGCDPDVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVGCP 257

Query: 180 QDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANK 238
            +VV  N+L+  +CR      R  + L + V     PD   +A +L+G  KEG++E A++
Sbjct: 258 PNVVTFNTLIGYLCRN-GLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHE 316

Query: 239 TFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDI 298
               M   +   P +V+ Y T L  L   ++ ++A + L  M   +C      F+  +D 
Sbjct: 317 ILDRM-PSYGLKP-NVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNILVDF 374

Query: 299 LVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAF 358
             +       ++L + M+  G   +P++I Y  VI   C    +D        M   G  
Sbjct: 375 FCQNGLVYRVIELLEQMLEHG--CVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACGCR 432

Query: 359 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 418
           P++++Y ++ + L   +R  + E    +MI+    P P+   T I  L      E AIE+
Sbjct: 433 PNTISYTIVLKGLCSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAIEL 492

Query: 419 WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 478
              +L NG  P   S + ++ GL   G+  +       M+N+ +    +    +  A   
Sbjct: 493 LKQMLLNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSK 552

Query: 479 ESRSMRDI--FDSLE 491
           E R  R I  FD+++
Sbjct: 553 EGRINRVIQMFDNIQ 567



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 122/278 (43%), Gaps = 5/278 (1%)

Query: 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMS 169
           L    +N++VD   +NG   ++   +  M E G +  + T+ ++ + +C  G  DEAVM 
Sbjct: 363 LDDVTFNILVDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVML 422

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK 229
              M+  G   + ++   +L  +C  E            +++   P+  +F  ++    K
Sbjct: 423 LKSMAACGCRPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCK 482

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
           +G VE+A +   +M+         +++Y T +  L +  + DEAL+ L VM  +   P  
Sbjct: 483 KGLVEQAIELLKQML--LNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNT 540

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
             +S+    L K       +Q++D +  +   +  + ++YNAVI  LC     D    F 
Sbjct: 541 IIYSSIASALSKEGRINRVIQMFDNIQDV--TIRSDAVLYNAVISSLCKRGGTDRAIEFL 598

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
             MV  G  P+  TY ++   L     V E ++   E+
Sbjct: 599 AYMVSSGCMPNESTYTILIRGLASEGFVKEAQEMLTEL 636



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 126/294 (42%), Gaps = 7/294 (2%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSYCGAG 161
           R    G + +   +N ++  L    R+EQ    +  M   D  L   TF  + D +C  G
Sbjct: 320 RMPSYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNG 379

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSF 220
                +   + M  HG   DV+   ++++  C+ E     A+  L  +      P+  S+
Sbjct: 380 LVYRVIELLEQMLEHGCVPDVITYTTVINGFCK-EGLIDEAVMLLKSMAACGCRPNTISY 438

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
            I+L+G        +A     +M+E+   +P  V  + T +  L +   V++A++ L+ M
Sbjct: 439 TIVLKGLCSAERWVDAEDLMSQMIEQ-GCSPNPV-TFNTVINFLCKKGLVEQAIELLKQM 496

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
               C P L  +S  +D L K   +  A++L ++MV  G +  PN I+Y+++   L    
Sbjct: 497 LLNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMS--PNTIIYSSIASALSKEG 554

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
            ++ V + FD +       D++ YN +   L K        +F   M+ +   P
Sbjct: 555 RINRVIQMFDNIQDVTIRSDAVLYNAVISSLCKRGGTDRAIEFLAYMVSSGCMP 608


>gi|357161570|ref|XP_003579133.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Brachypodium distachyon]
          Length = 721

 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 101/440 (22%), Positives = 187/440 (42%), Gaps = 13/440 (2%)

Query: 50  SSSARIICEILAHASS--DDIESALACTGIIPTPDLVHEVLQLSYDSPS-SAVDFFRWAG 106
           S   R  C +L    S    +E+ L     + +P  V  VL+      + +A +FFRWA 
Sbjct: 58  SRLVRDTCRLLEQRGSWTPKLEAQLRHLLRVLSPPQVRAVLRAQAQGDARAAFEFFRWAD 117

Query: 107 RG--QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKY 163
           R    R +P  ++ M+ +L +    +     VR+M   GV   P  FA +  SY  AGK 
Sbjct: 118 RQWQYRHAPEVFDEMLGLLSRTRLHDPARRVVRLMIRRGVRRGPRQFAHLMLSYSRAGKL 177

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAI 222
             A+    +M   G   D+ ++ ++   +     +  +AL F +R++++ V+PD  ++  
Sbjct: 178 RSAMRVLQLMQTDGCAPDI-SICNVAVNVLVVAGRVDKALGFADRMRRVGVEPDVVTYNC 236

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L++G      V EA +  G M++     P   ++Y T +  L + K+V E    L  M+ 
Sbjct: 237 LIKGLCSVRRVVEALEMIGVMLK--NGCPPDKISYYTVMSFLCKEKRVSEVRSLLATMRN 294

Query: 283 ENCFPTLKFFSNAL-DILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
           +    T +   N L  +L K   +  A++      G  F +  + + Y+AV+   C N  
Sbjct: 295 DAGLLTDQVTYNMLIHVLAKHGHADEALEFLRESEGKRFRV--DEVGYSAVVHSFCLNGR 352

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
           +        +M+     PD +TY+ + +   +   + +  K    M KN  +P  +    
Sbjct: 353 MAEAKEIVGEMISKECHPDVVTYSAVVDGFCRIGEIDQARKMMKHMYKNGCKPNIVTHTA 412

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461
            +  L    +   A E+ N   E+   P + + + ++ G R  G+L +      +ML + 
Sbjct: 413 LLNGLCKVGKSSEAWELLNKSGEDWWTPSDITYSVVMHGFRREGKLKESCDVVAQMLQKG 472

Query: 462 ILIYEVTMHKLKKAFYNESR 481
                V ++ L  A   E +
Sbjct: 473 FFPTTVEINLLIHALCKEGK 492



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 71/322 (22%), Positives = 138/322 (42%), Gaps = 17/322 (5%)

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEE 235
           G+  D V  N L+  + +       ALEFL   + K    D   ++ ++  +   G + E
Sbjct: 297 GLLTDQVTYNMLIHVLAKH-GHADEALEFLRESEGKRFRVDEVGYSAVVHSFCLNGRMAE 355

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
           A +  GEM+ + E +P+ V+ Y   +    R  ++D+A K ++ M    C P +   +  
Sbjct: 356 AKEIVGEMISK-ECHPD-VVTYSAVVDGFCRIGEIDQARKMMKHMYKNGCKPNIVTHTAL 413

Query: 296 LDILVKLNDSTHAVQLWDIMVGIGFNL-MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
           L+ L K+  S+ A   W+++   G +   P+ I Y+ V+        +        QM+ 
Sbjct: 414 LNGLCKVGKSSEA---WELLNKSGEDWWTPSDITYSVVMHGFRREGKLKESCDVVAQMLQ 470

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 414
            G FP ++  N++   L K  +  E ++F  +          +N  T I       + E 
Sbjct: 471 KGFFPTTVEINLLIHALCKEGKPAEAKEFMEQCQSKGCTINVVNFTTVIHGFSRQGDLES 530

Query: 415 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR----RILIYEVTMH 470
           A+ + + +  +   P   +   ++  L   GRL +     E+MLNR     ++ Y   +H
Sbjct: 531 ALSLLDDLYLSNRHPDVVTYTVVVNALGRKGRLKEATGLVEKMLNRGLVPTLVTYRTVIH 590

Query: 471 KLKKAFYNESRSMRDIFDSLER 492
           +     Y E  ++ ++ D L++
Sbjct: 591 R-----YCEKGTVEELVDLLDK 607



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 70/386 (18%), Positives = 156/386 (40%), Gaps = 45/386 (11%)

Query: 98  AVDFFRWA-GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFD 155
           A++F R + G+  R+    ++ +V     NGR  +    V  ++ ++    + T++++ D
Sbjct: 321 ALEFLRESEGKRFRVDEVGYSAVVHSFCLNGRMAEAKEIVGEMISKECHPDVVTYSAVVD 380

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVD 214
            +C  G+ D+A      M  +G + ++V   +LL+ +C+   ++S A E LN+  +    
Sbjct: 381 GFCRIGEIDQARKMMKHMYKNGCKPNIVTHTALLNGLCKV-GKSSEAWELLNKSGEDWWT 439

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           P   ++++++ G+ +EG ++E+     +M+++                            
Sbjct: 440 PSDITYSVVMHGFRREGKLKESCDVVAQMLQK---------------------------- 471

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
                      FPT    +  +  L K      A +  +     G  +  N++ +  VI 
Sbjct: 472 ---------GFFPTTVEINLLIHALCKEGKPAEAKEFMEQCQSKGCTI--NVVNFTTVIH 520

Query: 335 LLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
                 D+++     D +      PD +TY ++   L +  R+ E      +M+     P
Sbjct: 521 GFSRQGDLESALSLLDDLYLSNRHPDVVTYTVVVNALGRKGRLKEATGLVEKMLNRGLVP 580

Query: 395 TPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 454
           T +   T I    +    E  +++ + +L      L++  N+++  L   G+L++     
Sbjct: 581 TLVTYRTVIHRYCEKGTVEELVDLLDKMLARQ--ELKSVYNQVIEKLCAFGKLNEAYGLL 638

Query: 455 EEMLNRRILIYEVTMHKLKKAFYNES 480
            ++L         T H L ++F N  
Sbjct: 639 SKVLRTASQRDAQTCHILMESFLNRG 664



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 61/315 (19%), Positives = 125/315 (39%), Gaps = 9/315 (2%)

Query: 119 MVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           +++ L K G+  + W  +    ED    S  T++ +   +   GK  E+      M   G
Sbjct: 413 LLNGLCKVGKSSEAWELLNKSGEDWWTPSDITYSVVMHGFRREGKLKESCDVVAQMLQKG 472

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEA 236
                V +N L+ A+C+ E + + A EF+ + + K    +  +F  ++ G+ ++G++E A
Sbjct: 473 FFPTTVEINLLIHALCK-EGKPAEAKEFMEQCQSKGCTINVVNFTTVIHGFSRQGDLESA 531

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
                + +     +P+ V+ Y   +  L R  ++ EA   +  M      PTL  +   +
Sbjct: 532 LSLL-DDLYLSNRHPD-VVTYTVVVNALGRKGRLKEATGLVEKMLNRGLVPTLVTYRTVI 589

Query: 297 DILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG 356
               +       V L D M+           +YN VI  LC    ++  +    +++   
Sbjct: 590 HRYCEKGTVEELVDLLDKMLA----RQELKSVYNQVIEKLCAFGKLNEAYGLLSKVLRTA 645

Query: 357 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 416
           +  D+ T +++ E  +      +       M +    P    C      L+  +  + A 
Sbjct: 646 SQRDAQTCHILMESFLNRGLTIQAYNVACRMFQRNLIPDLKLCQKVDDRLVLEERKQAAG 705

Query: 417 EIWNYILENGILPLE 431
           ++    +E G+L  E
Sbjct: 706 KLIVKFVERGLLKQE 720


>gi|302757529|ref|XP_002962188.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
 gi|300170847|gb|EFJ37448.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
          Length = 535

 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 82/358 (22%), Positives = 158/358 (44%), Gaps = 21/358 (5%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           + ++VD L K  + E+  +    M   G    +  ++S+ D    AG+ DEA    D+M 
Sbjct: 144 YTVLVDGLCKAHKVERACDVFEEMIRKGHKPDIIAYSSLIDGLSKAGRVDEARKLVDLMI 203

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG----DSFAILLEGWEKE 230
             G     VA  S+++ +C+      R  E +  ++++         D+++ ++ G+   
Sbjct: 204 ARGPPPTAVAYTSIVAGLCK----CGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGM 259

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           G VEEA     EM +R +  P+  ++Y  F+  L    + +EA K    M  + C P + 
Sbjct: 260 GKVEEAFAVMEEMADR-DCAPD-TISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMH 317

Query: 291 FFSNALDILVK---LNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFR 347
            +   +D   K   +  +TH ++L D        + PN  +Y  ++     +  ++    
Sbjct: 318 TYGIIIDNFCKEGSMAAATHVLRLMDKAA-----VKPNRYIYTMIMDGFVKSSRLEEALE 372

Query: 348 FFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI--KNEWQPTPLNCATAITM 405
            + +++  G  P ++TYN +   L K K++ E  +   EM   K E +P+ +  +  I  
Sbjct: 373 LYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMIIHG 432

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
           L      E A ++   +++NG++P   +   L+  L   G++S      EEML   I 
Sbjct: 433 LGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAGIF 490



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/338 (23%), Positives = 145/338 (42%), Gaps = 12/338 (3%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLN 207
           T+ +I D    AG YD  +  ++ M     E  ++    L+  +C+  ++  RA + F  
Sbjct: 108 TYTAIVDGLFKAGNYDAGLEYYEKMVASKCEPTLLTYTVLVDGLCKA-HKVERACDVFEE 166

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            ++K   PD  +++ L++G  K G V+EA K    M+ R    P   +AY + +  L + 
Sbjct: 167 MIRKGHKPDIIAYSSLIDGLSKAGRVDEARKLVDLMIAR--GPPPTAVAYTSIVAGLCKC 224

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
            ++ EA+K ++ M+     P +  +S  +   + +     A  + + M     +  P+ I
Sbjct: 225 GRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEEAFAVMEEMA--DRDCAPDTI 282

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            Y   I  L +    +   + F+ MV  G  PD  TY +I +   K   +         M
Sbjct: 283 SYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLM 342

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
            K   +P        +   + +   E A+E++  IL++GILP   + N ++  L  L ++
Sbjct: 343 DKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKM 402

Query: 448 SDVRRFAEEMLNRR------ILIYEVTMHKLKKAFYNE 479
            +      EM  R+      I+ Y + +H L K    E
Sbjct: 403 DEALELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEE 440



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/327 (20%), Positives = 141/327 (43%), Gaps = 4/327 (1%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYD 164
            RG   +  A+  +V  L K GR ++    ++ M+   +   + T++ I   Y G GK +
Sbjct: 204 ARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVE 263

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
           EA    + M+      D ++    + A+     +      F   V+K   PD  ++ I++
Sbjct: 264 EAFAVMEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIII 323

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           + + KEG++  A      ++++    P   + Y   +   ++  +++EAL+  + +  + 
Sbjct: 324 DNFCKEGSMAAATHVL-RLMDKAAVKPNRYI-YTMIMDGFVKSSRLEEALELYQRILKDG 381

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
             P+   ++  ++ L KL     A++L   M      L P+++ Y+ +I  L      + 
Sbjct: 382 ILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEER 441

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
            F    +M+ +G  PD  TY  + + L    +V    +   EM+K    P      T + 
Sbjct: 442 AFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAGIFPDDHTYGTLVQ 501

Query: 405 MLLDADEPEIAIEIWNYILENGILPLE 431
           +L  +D  + A ++   ++ NG  P E
Sbjct: 502 ILCRSD-VDAAWDLLQEMMRNGHTPNE 527



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 131/320 (40%), Gaps = 17/320 (5%)

Query: 186 NSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245
           NSLL A+ R   Q S AL F      I +P+  SF ILL G+    + E  N    EM  
Sbjct: 1   NSLLLALVRG-GQLSDALGFFQ--SSISEPNVSSFNILLRGFAARDDFEVVNALLREMKA 57

Query: 246 RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC-------FPTLKFFSNALDI 298
           R      +   +   L  L   + +D+A+ +      E C        P    ++  +D 
Sbjct: 58  R--GITSNGATHGVILSALCARRDLDKAVSYFNSRTEEACRLFEAIEAPDSVTYTAIVDG 115

Query: 299 LVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAF 358
           L K  +    ++ ++ MV       P L+ Y  ++  LC    V+     F++M+  G  
Sbjct: 116 LFKAGNYDAGLEYYEKMVA--SKCEPTLLTYTVLVDGLCKAHKVERACDVFEEMIRKGHK 173

Query: 359 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 418
           PD + Y+ + + L K  RV E  K    MI     PT +   + +  L      + A++ 
Sbjct: 174 PDIIAYSSLIDGLSKAGRVDEARKLVDLMIARGPPPTAVAYTSIVAGLCKCGRIQEAVKT 233

Query: 419 WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 478
              +    + P   + + ++ G   +G++ +     EEM +R      ++     +A Y+
Sbjct: 234 IQEMRRRRLRPRVDTYSFIVTGYIGMGKVEEAFAVMEEMADRDCAPDTISYTMFIEALYS 293

Query: 479 ESR--SMRDIFDSL-ERRCK 495
             R      +F+++ E+ CK
Sbjct: 294 IGRREEAEKVFETMVEKGCK 313


>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
 gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
          Length = 799

 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 91/413 (22%), Positives = 159/413 (38%), Gaps = 40/413 (9%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F     RG       +  ++D L K   F++     + M ++G   +  T+  +   Y  
Sbjct: 222 FLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLS 281

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
            GK+ E V   + MS  G++ D     SLL+ +C+          F + ++K + P   +
Sbjct: 282 IGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVST 341

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           + IL+ G+  +G + E +     MVE    +P+H + +  F     +   +D+A+     
Sbjct: 342 YGILIHGYATKGALSEMHSFLDLMVEN-GLSPDHHI-FNIFFSAYAKCGMIDKAMDIFNK 399

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG-------FN----------- 321
           M+     P +  +   +D L KL     A   ++ M+  G       FN           
Sbjct: 400 MRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDK 459

Query: 322 ---------------LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM 366
                          + PN + +N +I  LCN   V    R  D M   G  PD+ +Y  
Sbjct: 460 WERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTP 519

Query: 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 426
           +        R  E EK F  M+     PT +   T +     A   + A  ++  +L  G
Sbjct: 520 LISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKG 579

Query: 427 ILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR----ILIYEVTMHKLKKA 475
           + P   + N +L GL    R S+ +     M+N      I  Y + ++ L K+
Sbjct: 580 VTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKS 632



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 147/336 (43%), Gaps = 15/336 (4%)

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSR--ALEFLNRVKK----IVDPDG 217
           D+A+  FD +  H     V A N LL+A+ R    ++   A+   NR+ +     V P+ 
Sbjct: 31  DDALKLFDELLHHARPASVRAFNHLLTAVSRARCSSASELAVSHFNRMVRECSDKVAPNL 90

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK-F 276
            +++IL+  + + G++E     FG ++ +  W  +H+ A    L  L  GK+V EA+   
Sbjct: 91  CTYSILIGRFCRMGHLEHGFAAFG-LILKTGWRMDHI-AINQLLKGLCHGKRVGEAMDVL 148

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG-IGFNLMPNLIMYNAVIGL 335
           L+ M    C P    ++  L  L     +  A++L  +M    G    PN++ Y+ VI  
Sbjct: 149 LQRMPELGCMPDTVSYTILLKGLCNEKRAEEALELLHMMADDHGRRCPPNVVSYSIVING 208

Query: 336 LCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 395
                 VD  +  F +M+  G  PD +TY  + + L K +     E  F +MI N ++P 
Sbjct: 209 FFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPN 268

Query: 396 PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 455
                  I   L   + +  +++   +   G+ P   +   LL  L   GR  + R F +
Sbjct: 269 NYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFD 328

Query: 456 EMLNR----RILIYEVTMHKL-KKAFYNESRSMRDI 486
            M+ +    ++  Y + +H    K   +E  S  D+
Sbjct: 329 SMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDL 364



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 86/407 (21%), Positives = 165/407 (40%), Gaps = 42/407 (10%)

Query: 111 LSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAV 167
           LSP  + +N+      K G  ++  +    M++ G+  ++  + ++ D+ C  G+ D+A 
Sbjct: 370 LSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAE 429

Query: 168 MSFDVMSMHGVEQDVVAVNSLLSAIC------RQENQTSRALE--------FLNRV---- 209
           + F+ M   GV  ++V  NSL+  +C      R E      L+        F N +    
Sbjct: 430 VKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNL 489

Query: 210 ---------KKIVD--------PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
                    ++++D        PD  S+  L+ G+   G  +EA K F  MV     +P 
Sbjct: 490 CNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVS-IGLSPT 548

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
            V  Y T L       ++D+A    R M  +   P +  ++  L  L +    + A +L+
Sbjct: 549 EV-TYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELY 607

Query: 313 DIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 372
             M+  G     ++  YN ++  LC ++ VD  F+ F  +   G   + +T+ ++   L+
Sbjct: 608 LNMINSGTKC--DIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALL 665

Query: 373 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 432
           K  R  +    F  +  N   P  +        L++    E    +++ + +NG  P   
Sbjct: 666 KGGRKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQ 725

Query: 433 SANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 479
             N L+  L + G +S    +  ++  R   +   T   L   F ++
Sbjct: 726 MLNALVRRLLHRGDISRAGAYLSKLDERNFSVEASTTSLLMSIFTSD 772



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 74/347 (21%), Positives = 141/347 (40%), Gaps = 8/347 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP----TFASIFDSYCGAGKYDEAVMSF 170
           ++ +++  L    R E+    + +M +D     P    +++ + + +   G+ D+    F
Sbjct: 163 SYTILLKGLCNEKRAEEALELLHMMADDHGRRCPPNVVSYSIVINGFFTEGQVDKPYNLF 222

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
             M   G+  DVV   +++  +C+ +        F   +     P+  ++  L+ G+   
Sbjct: 223 LEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSI 282

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           G  +E  +   EM  R    P+    Y + L  L +  +  EA  F   M  +   P + 
Sbjct: 283 GKWKEVVQMLEEMSAR-GLKPD-CYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVS 340

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
            +   +         +      D+MV  G  L P+  ++N           +D     F+
Sbjct: 341 TYGILIHGYATKGALSEMHSFLDLMVENG--LSPDHHIFNIFFSAYAKCGMIDKAMDIFN 398

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
           +M  HG  P+ + Y  + + L K  RV + E  F++MI     P  +   + +  L   D
Sbjct: 399 KMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVD 458

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           + E A E+   +L+ GI P     N L+  L N+GR+ + RR  + M
Sbjct: 459 KWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLM 505



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 87/419 (20%), Positives = 159/419 (37%), Gaps = 48/419 (11%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAV-MSFDVM 173
           +++++    + G  E  + A  ++ + G  +       +    C   +  EA+ +    M
Sbjct: 93  YSILIGRFCRMGHLEHGFAAFGLILKTGWRMDHIAINQLLKGLCHGKRVGEAMDVLLQRM 152

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK----KIVDPDGDSFAILLEGWEK 229
              G   D V+   LL  +C  E +   ALE L+ +     +   P+  S++I++ G+  
Sbjct: 153 PELGCMPDTVSYTILLKGLC-NEKRAEEALELLHMMADDHGRRCPPNVVSYSIVINGFFT 211

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
           EG V++    F EM++R    P  V+ Y T +  L + +  D A    + M      P  
Sbjct: 212 EGQVDKPYNLFLEMIDR--GIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNN 269

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV------- 342
             ++  +   + +      VQ+ + M   G  L P+   Y +++  LC N          
Sbjct: 270 YTYNCLIHGYLSIGKWKEVVQMLEEMSARG--LKPDCYTYGSLLNYLCKNGRCREARFFF 327

Query: 343 DNVFR----------------------------FFDQMVFHGAFPDSLTYNMIFECLIKN 374
           D++ R                            F D MV +G  PD   +N+ F    K 
Sbjct: 328 DSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKC 387

Query: 375 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 434
             + +    F++M ++   P  +N    I  L      + A   +N ++  G+ P     
Sbjct: 388 GMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVF 447

Query: 435 NELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSM--RDIFDSLE 491
           N L+ GL  + +         EML++ I    V  + L     N  R M  R + D +E
Sbjct: 448 NSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLME 506


>gi|449436637|ref|XP_004136099.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80880,
           mitochondrial-like [Cucumis sativus]
 gi|449509164|ref|XP_004163514.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80880,
           mitochondrial-like [Cucumis sativus]
          Length = 547

 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 88/378 (23%), Positives = 167/378 (44%), Gaps = 10/378 (2%)

Query: 82  DLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE 141
           DLV+  + +  D   S++  F+W  +   +     NLM+ VLG + +F   W+ +R +  
Sbjct: 116 DLVYSAIWVLRDDWKSSLLAFKWGEKVGAIDEEICNLMIWVLGNHKKFSTAWSLIRELHG 175

Query: 142 DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSR 201
             + S+     + D Y  A +  +A+ +F +M    +  D  A + LL+++C+  N    
Sbjct: 176 SLLNSMQAMLVMIDRYAYANEASKAIKTFHMMEKFRLTPDQEAFHVLLNSLCKYGN-IEE 234

Query: 202 ALEFLNRVKKIVDPDGDSFAILLEGW-EKEGNVEEANKTFGEMVERFEWNPEHVLAYETF 260
           A EF+   KK+     +SF I+L GW     +V EA + + EM  +    P+   +Y   
Sbjct: 235 AEEFMFVNKKLFPLGTESFNIILNGWCNVTVDVFEAKRIWREM-SKCCILPDST-SYTHM 292

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF 320
           +    +   + ++L+F   MK  +  P+++ +++   +L + N    A+++ + +  +G 
Sbjct: 293 ISCFSKNGNLFDSLRFYDQMKKRDWIPSVEVYNSLAYVLTRENCFNEALKILEKIKEVG- 351

Query: 321 NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEV 380
            L P+   YN++I  LC    +D        M      P   TY+   +    +K   E+
Sbjct: 352 -LRPDSTTYNSLISPLCEAGKLDEAKDVLTMMTEDNISPTIETYHSFIQA-ADSKMSFEL 409

Query: 381 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 440
            K    M ++   PT            + +EPE A+ +W  +    + P     + L+ G
Sbjct: 410 LK---RMRQDGLGPTEGTFLIMFNKSFELEEPEYALNVWVEMKRYEVFPSCEHYSVLIQG 466

Query: 441 LRNLGRLSDVRRFAEEML 458
           L   G L   R   +EM+
Sbjct: 467 LATCGHLKKARELYDEMI 484



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 43/209 (20%), Positives = 89/209 (42%), Gaps = 10/209 (4%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           ++  +   +   G   +++  +D M        V   NSL   + R EN  + AL+ L +
Sbjct: 288 SYTHMISCFSKNGNLFDSLRFYDQMKKRDWIPSVEVYNSLAYVLTR-ENCFNEALKILEK 346

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           +K++ + PD  ++  L+    + G ++EA      M E    +P  +  Y +F    I+ 
Sbjct: 347 IKEVGLRPDSTTYNSLISPLCEAGKLDEAKDVLTMMTED-NISPT-IETYHSF----IQA 400

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
                + + L+ M+ +   PT   F    +   +L +  +A+ +W  M    + + P+  
Sbjct: 401 ADSKMSFELLKRMRQDGLGPTEGTFLIMFNKSFELEEPEYALNVWVEMKR--YEVFPSCE 458

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHG 356
            Y+ +I  L     +      +D+M+ HG
Sbjct: 459 HYSVLIQGLATCGHLKKARELYDEMILHG 487


>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12775, mitochondrial; Flags: Precursor
 gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
           Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
           multiple PPR PF|01535 repeats. EST gb|AI999079 comes
           from this gene [Arabidopsis thaliana]
 gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 644

 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 92/387 (23%), Positives = 170/387 (43%), Gaps = 8/387 (2%)

Query: 98  AVDFFRWAGRGQRL-SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFD 155
           AVD FR   + + L +   +N +   + K  ++E +    + M+  G+  S+ T + + +
Sbjct: 72  AVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMIN 131

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV-D 214
            +C   K   A  +   +   G E D V  N+LL+ +C  E + S ALE ++R+ ++   
Sbjct: 132 CFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLC-LECRVSEALELVDRMVEMGHK 190

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           P   +   L+ G    G V +A      MVE   + P  V  Y   L  + +  Q   A+
Sbjct: 191 PTLITLNTLVNGLCLNGKVSDAVVLIDRMVET-GFQPNEV-TYGPVLNVMCKSGQTALAM 248

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
           + LR M+  N       +S  +D L K     +A  L++ M   GF    ++I YN +IG
Sbjct: 249 ELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFK--ADIITYNTLIG 306

Query: 335 LLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
             CN    D+  +    M+     P+ +T++++ +  +K  ++ E ++   EM++    P
Sbjct: 307 GFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAP 366

Query: 395 TPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 454
             +   + I      +  E AI++ + ++  G  P   + N L+ G     R+ D     
Sbjct: 367 NTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELF 426

Query: 455 EEMLNRRILIYEVTMHKLKKAFYNESR 481
            EM  R ++   VT + L + F    +
Sbjct: 427 REMSLRGVIANTVTYNTLVQGFCQSGK 453



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 72/340 (21%), Positives = 147/340 (43%), Gaps = 48/340 (14%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAG 161
           R    G + +   +  +++V+ K+G+       +R M+E  + L    ++ I D  C  G
Sbjct: 218 RMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDG 277

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221
             D A   F+ M + G + D++  N+L+   C        A    + +K+ + P+  +F+
Sbjct: 278 SLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFS 337

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           +L++ + KEG + EA++   EM++R      + + Y + +    +  +++EA++ + +M 
Sbjct: 338 VLIDSFVKEGKLREADQLLKEMMQR--GIAPNTITYNSLIDGFCKENRLEEAIQMVDLMI 395

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
            + C P                         DIM             +N +I   C  + 
Sbjct: 396 SKGCDP-------------------------DIMT------------FNILINGYCKANR 418

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
           +D+    F +M   G   +++TYN + +   ++ ++   +K F EM+    +P  ++   
Sbjct: 419 IDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKI 478

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 441
            +  L D  E E A+EI+  I        E S  EL +G+
Sbjct: 479 LLDGLCDNGELEKALEIFGKI--------EKSKMELDIGI 510



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 73/343 (21%), Positives = 150/343 (43%), Gaps = 8/343 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G +     +N ++      GR++     +R M +  +  ++ TF+ + DS+   GK  E
Sbjct: 292 KGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLRE 351

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILL 224
           A      M   G+  + +  NSL+   C+ EN+   A++ ++  + K  DPD  +F IL+
Sbjct: 352 ADQLLKEMMQRGIAPNTITYNSLIDGFCK-ENRLEEAIQMVDLMISKGCDPDIMTFNILI 410

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G+ K   +++  + F EM  R      + + Y T +    +  +++ A K  + M    
Sbjct: 411 NGYCKANRIDDGLELFREMSLR--GVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRR 468

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
             P +  +   LD L    +   A++++  +      L  ++ +Y  +I  +CN   VD+
Sbjct: 469 VRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMEL--DIGIYMIIIHGMCNASKVDD 526

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
            +  F  +   G   D+  YN++   L +   + + +  F +M +    P  L     I 
Sbjct: 527 AWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIR 586

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
             L  D+   A E+   +  +G  P + S  ++++ + + G L
Sbjct: 587 AHLGDDDATTAAELIEEMKSSG-FPADVSTVKMVINMLSSGEL 628



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 74/335 (22%), Positives = 133/335 (39%), Gaps = 41/335 (12%)

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSF 220
           K D+AV  F  M        V+  N L SAI + + Q    L    +++ K +     + 
Sbjct: 68  KADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTK-QYELVLALCKQMESKGIAHSIYTL 126

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
           +I++  + +   +  A  T G+++ +  + P+ V+ + T L  L    +V EAL+ +  M
Sbjct: 127 SIMINCFCRCRKLSYAFSTMGKIM-KLGYEPDTVI-FNTLLNGLCLECRVSEALELVDRM 184

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGL----- 335
                 PTL   +  ++ L      + AV L D MV  GF   PN + Y  V+ +     
Sbjct: 185 VEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQ--PNEVTYGPVLNVMCKSG 242

Query: 336 ------------------------------LCNNDDVDNVFRFFDQMVFHGAFPDSLTYN 365
                                         LC +  +DN F  F++M   G   D +TYN
Sbjct: 243 QTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYN 302

Query: 366 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 425
            +        R  +  K   +MIK +  P  +  +  I   +   +   A ++   +++ 
Sbjct: 303 TLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQR 362

Query: 426 GILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           GI P   + N L+ G     RL +  +  + M+++
Sbjct: 363 GIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISK 397



 Score = 43.5 bits (101), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 63/144 (43%), Gaps = 1/144 (0%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCG 159
           F     R  R    ++ +++D L  NG  E+      ++ K    L +  +  I    C 
Sbjct: 461 FQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCN 520

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
           A K D+A   F  + + GV+ D  A N ++S +CR+++ +   + F    ++   PD  +
Sbjct: 521 ASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELT 580

Query: 220 FAILLEGWEKEGNVEEANKTFGEM 243
           + IL+     + +   A +   EM
Sbjct: 581 YNILIRAHLGDDDATTAAELIEEM 604


>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
          Length = 650

 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 142/330 (43%), Gaps = 41/330 (12%)

Query: 93  DSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTF 150
           D  S AVD   R    G + + + +  +++ + K+G      + +R M+   +   + T+
Sbjct: 209 DRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTY 268

Query: 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK 210
             I D+ C  G+ D+A+  F  M   G++ +V   NSL+ + C        A    + + 
Sbjct: 269 TIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMIT 328

Query: 211 KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270
           + + P+  +F+ L++   KEG + EA   + EM+ R    P + + Y + +  L   K++
Sbjct: 329 RKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITR-GIEP-NTITYNSLIYGLCNDKRL 386

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYN 330
           DEA                                    Q+ D+MV  G +  P++  YN
Sbjct: 387 DEA-----------------------------------NQMMDLMVSKGCD--PDIWTYN 409

Query: 331 AVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 390
            +I   C    VD+  R F +M   G   D++TY+ + +   +++++   +K F EM+  
Sbjct: 410 ILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQ 469

Query: 391 EWQPTPLNCATAITMLLDADEPEIAIEIWN 420
              P  +  A  +  L D  E E A+ I +
Sbjct: 470 GVHPGIMTYAILLDGLCDNGELEEALGILD 499



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 71/325 (21%), Positives = 151/325 (46%), Gaps = 10/325 (3%)

Query: 98  AVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFD 155
           A+ FF     +G + + + +N ++      GR++     +R M    +  ++ TF+++ D
Sbjct: 284 ALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSALID 343

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC--RQENQTSRALEFLNRVKKIV 213
           S    GK  EA   ++ M   G+E + +  NSL+  +C  ++ ++ ++ ++ +  V K  
Sbjct: 344 SLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLM--VSKGC 401

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
           DPD  ++ IL+ G+ K   V++  + F +M  R        + Y T +    + +++  A
Sbjct: 402 DPDIWTYNILINGFCKAKQVDDGMRLFRKMSLR--GMIADTVTYSTLIQGFCQSRKLIVA 459

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
            K  + M  +   P +  ++  LD L    +   A+ + D M      L  ++ +YN +I
Sbjct: 460 KKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGILDQMHKCKMEL--DIGIYNIII 517

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
             +CN + VD+ +  F  +   G   D  +YN++   L K   + E +  F +M ++ ++
Sbjct: 518 HGMCNANKVDDAWSLFCSLPSKGVKRDIQSYNIMLSGLCKRSSLSEADALFRKMKEDGYE 577

Query: 394 PTPLNCATAITMLLDADEPEIAIEI 418
           P      T I   L  ++   ++++
Sbjct: 578 PDGCTYNTLIRAHLRGNDITTSVQL 602



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 137/318 (43%), Gaps = 9/318 (2%)

Query: 147 LPT---FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRAL 203
           LPT   F  +F       +YD  +     M + G+  D+  +N +++  CR+  +   A 
Sbjct: 87  LPTVIDFNRLFGLLARTKQYDLVLALCKQMELKGIAYDLYTLNIMINCFCRRR-KLGFAF 145

Query: 204 EFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI 262
             + ++ K+  +P+  +F  LL G   EG V EA +    MV     +   ++   T + 
Sbjct: 146 SAMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELVDCMV--LSQHVPDLITLNTIVN 203

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL 322
            L    +V EA+  +  M    C P    +   L+ + K  ++  A+ L   M      +
Sbjct: 204 GLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEH--RKI 261

Query: 323 MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
            P+++ Y  +I  LC +  +D+   FF +M   G   +  TYN +        R  +  +
Sbjct: 262 KPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQ 321

Query: 383 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 442
              +MI  +  P  +  +  I  L+   +   A +++N ++  GI P   + N L+ GL 
Sbjct: 322 LLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLC 381

Query: 443 NLGRLSDVRRFAEEMLNR 460
           N  RL +  +  + M+++
Sbjct: 382 NDKRLDEANQMMDLMVSK 399



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/358 (18%), Positives = 157/358 (43%), Gaps = 7/358 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDE 165
           +G     Y  N+M++   +  +    ++A+ ++ K     +  TF ++ +  C  G+  E
Sbjct: 119 KGIAYDLYTLNIMINCFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFE 178

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILL 224
           AV   D M +     D++ +N++++ +C ++ + S A++ + R+      P+  ++  +L
Sbjct: 179 AVELVDCMVLSQHVPDLITLNTIVNGLCLKD-RVSEAVDLIARMMANGCQPNQFTYGPIL 237

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
               K GN   A     +M  R +  P HV+ Y   +  L +  ++D+AL F   M+ + 
Sbjct: 238 NRMCKSGNTASALDLLRKMEHR-KIKP-HVVTYTIIIDNLCKDGRLDDALSFFSEMETKG 295

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
               +  +++ +             QL   M  I   + PN++ ++A+I  L     +  
Sbjct: 296 IKANVFTYNSLIGSFCSFGRWDDGAQLLRDM--ITRKITPNVVTFSALIDSLVKEGKLTE 353

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
               +++M+  G  P+++TYN +   L  +KR+ E  +    M+     P        I 
Sbjct: 354 AKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILIN 413

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
               A + +  + ++  +   G++    + + L+ G     +L   ++  +EM+++ +
Sbjct: 414 GFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGV 471



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 49/228 (21%), Positives = 81/228 (35%), Gaps = 2/228 (0%)

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
           V+ +      L R KQ D  L   + M+ +     L   +  ++   +      A     
Sbjct: 90  VIDFNRLFGLLARTKQYDLVLALCKQMELKGIAYDLYTLNIMINCFCRRRKLGFAFSAMG 149

Query: 314 IMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 373
            +  +G+   PN + +N ++  LC    V       D MV     PD +T N I   L  
Sbjct: 150 KIFKLGYE--PNTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQHVPDLITLNTIVNGLCL 207

Query: 374 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 433
             RV E       M+ N  QP        +  +  +     A+++   +    I P   +
Sbjct: 208 KDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVT 267

Query: 434 ANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
              ++  L   GRL D   F  EM  + I     T + L  +F +  R
Sbjct: 268 YTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGR 315



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 2/133 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+A + D  C  G+ +EA+   D M    +E D+   N ++  +C           F + 
Sbjct: 477 TYAILLDGLCDNGELEEALGILDQMHKCKMELDIGIYNIIIHGMCNANKVDDAWSLFCSL 536

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
             K V  D  S+ I+L G  K  ++ EA+  F +M E   + P+    Y T +   +RG 
Sbjct: 537 PSKGVKRDIQSYNIMLSGLCKRSSLSEADALFRKMKED-GYEPDGC-TYNTLIRAHLRGN 594

Query: 269 QVDEALKFLRVMK 281
            +  +++ +  MK
Sbjct: 595 DITTSVQLIEEMK 607



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 76/189 (40%), Gaps = 4/189 (2%)

Query: 307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM 366
            AV+L D MV      +P+LI  N ++  LC  D V        +M+ +G  P+  TY  
Sbjct: 178 EAVELVDCMVL--SQHVPDLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGP 235

Query: 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 426
           I   + K+           +M   + +P  +     I  L      + A+  ++ +   G
Sbjct: 236 ILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKG 295

Query: 427 ILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMR 484
           I     + N L+    + GR  D  +   +M+ R+I    VT   L  +   E +    +
Sbjct: 296 IKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAK 355

Query: 485 DIFDSLERR 493
           D+++ +  R
Sbjct: 356 DLYNEMITR 364


>gi|302801478|ref|XP_002982495.1| hypothetical protein SELMODRAFT_116601 [Selaginella moellendorffii]
 gi|300149594|gb|EFJ16248.1| hypothetical protein SELMODRAFT_116601 [Selaginella moellendorffii]
          Length = 448

 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 129/312 (41%), Gaps = 46/312 (14%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           A+  M+D L K G+  +    V  M +  V    T+ ++    C   + D+A+  FD+M 
Sbjct: 117 AYKTMLDCLIKTGKTREASEVVGEMIKKSVPDGMTYTALISVLCKHNRADDAMKVFDIM- 175

Query: 175 MHGVEQDVV----AVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE----- 225
              VE+++V       SLL+A CR          F+  +++   P   ++ +LL      
Sbjct: 176 ---VEKEIVPNLDVYTSLLAAHCRTRKLDGAYRLFVEMIQRGYGPSASTYGLLLRCLCNG 232

Query: 226 ------------------------------GWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
                                         G    G + EA   F E++E  E       
Sbjct: 233 GRSYLAYDIHSSMRSRGHVPDENTYASLIYGCCMAGRITEAKVLFKEVLEG-EKALLDAG 291

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
            Y   +  L R  +V+EAL+    M  + C PTL+ ++  +    K N+   A+QL+ +M
Sbjct: 292 IYNVLIEGLCRASKVEEALEVTAGMVDKGCIPTLQTYNALIMGFFKANEVDKALQLFRVM 351

Query: 316 VGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 375
              GF+  PN ++Y+  I  LC    ++    FF Q V  G  PD++TYN +   L    
Sbjct: 352 EEKGFS--PNTMIYSTFIDGLCKVGKINEAHEFFQQSVERGCVPDNVTYNALIRGLFGAN 409

Query: 376 RVHEVEKFFHEM 387
           R+ E  + + EM
Sbjct: 410 RMDEAHRLYREM 421



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 125/301 (41%), Gaps = 41/301 (13%)

Query: 213 VDPDGDSFAILLEGWEKEGNVEEAN----------------------------KTFGEMV 244
           V PD DS+ +L+ G  K  +V++A                             K  GE+ 
Sbjct: 6   VVPDRDSYNLLVRGLTKLSSVDQARAMLSTMVGEGYDPDVVTCGLLVDKFCEMKRVGEVC 65

Query: 245 ERF---EWNPEHV--LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299
           E F   E N   V  LAY   L  L+     D   KF  +  G+   P +  +   LD L
Sbjct: 66  ELFQELESNGVAVGMLAYNAILKALMCSGDFDGGFKFSDIAVGDGSLPHVLAYKTMLDCL 125

Query: 300 VKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFP 359
           +K   +  A ++   M+      +P+ + Y A+I +LC ++  D+  + FD MV     P
Sbjct: 126 IKTGKTREASEVVGEMIK---KSVPDGMTYTALISVLCKHNRADDAMKVFDIMVEKEIVP 182

Query: 360 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 419
           +   Y  +     + +++    + F EMI+  + P+       +  L +     +A +I 
Sbjct: 183 NLDVYTSLLAAHCRTRKLDGAYRLFVEMIQRGYGPSASTYGLLLRCLCNGGRSYLAYDIH 242

Query: 420 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML--NRRIL---IYEVTMHKLKK 474
           + +   G +P E +   L+ G    GR+++ +   +E+L   + +L   IY V +  L +
Sbjct: 243 SSMRSRGHVPDENTYASLIYGCCMAGRITEAKVLFKEVLEGEKALLDAGIYNVLIEGLCR 302

Query: 475 A 475
           A
Sbjct: 303 A 303



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/335 (21%), Positives = 141/335 (42%), Gaps = 19/335 (5%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++NL+V  L K    +Q    +  M  +G    + T   + D +C   +  E    F  +
Sbjct: 12  SYNLLVRGLTKLSSVDQARAMLSTMVGEGYDPDVVTCGLLVDKFCEMKRVGEVCELFQEL 71

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD-----SFAILLEGWE 228
             +GV   ++A N++L A+       S   +   +   I   DG      ++  +L+   
Sbjct: 72  ESNGVAVGMLAYNAILKAL-----MCSGDFDGGFKFSDIAVGDGSLPHVLAYKTMLDCLI 126

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           K G   EA++  GEM+++   +    + Y   +  L +  + D+A+K   +M  +   P 
Sbjct: 127 KTGKTREASEVVGEMIKK---SVPDGMTYTALISVLCKHNRADDAMKVFDIMVEKEIVPN 183

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
           L  +++ L    +      A +L+  M+  G+   P+   Y  ++  LCN       +  
Sbjct: 184 LDVYTSLLAAHCRTRKLDGAYRLFVEMIQRGYG--PSASTYGLLLRCLCNGGRSYLAYDI 241

Query: 349 FDQMVFHGAFPDSLTY-NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA-ITML 406
              M   G  PD  TY ++I+ C +   R+ E +  F E+++ E            I  L
Sbjct: 242 HSSMRSRGHVPDENTYASLIYGCCMAG-RITEAKVLFKEVLEGEKALLDAGIYNVLIEGL 300

Query: 407 LDADEPEIAIEIWNYILENGILPLEASANELLVGL 441
             A + E A+E+   +++ G +P   + N L++G 
Sbjct: 301 CRASKVEEALEVTAGMVDKGCIPTLQTYNALIMGF 335


>gi|224127136|ref|XP_002329409.1| predicted protein [Populus trichocarpa]
 gi|222870459|gb|EEF07590.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 92/409 (22%), Positives = 171/409 (41%), Gaps = 42/409 (10%)

Query: 86  EVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV- 144
           +VL ++ D  +    F ++ G G  ++  A N ++   G  G  E++    R MKE+GV 
Sbjct: 105 DVLAINGDLDNVKSVFCKFRGMGFLMNVSAANSLIKSFGSLGMVEELLWVWRGMKENGVE 164

Query: 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204
            SL T+  + +    +   + A    +VM    +  DVV  N+++   C Q  +T +A E
Sbjct: 165 PSLFTYNFLLNGLVNSVFIESAERVLEVMENGKIGPDVVTYNTMIKGYC-QVGKTQKAFE 223

Query: 205 -FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT 263
            F +   + V PD  ++  L++    EG+ +     + EM E     P H  AY   +  
Sbjct: 224 KFRDMELRNVAPDKITYMTLIQACYAEGDFDLCLSLYHEMDENGLEIPPH--AYSLVIGG 281

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLM 323
           L +  +  E       M  + C   +  ++  +D   K  +   A+ L++ M   G  L 
Sbjct: 282 LCKEGKCVEGYAVFEKMIQKGCKVNVAIYTALIDSNAKCGNMGEAMLLFERMKKEG--LE 339

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           P+++ Y  V+  +C +  +D    + +    +G   +++ Y+ + + L K  RVHE EK 
Sbjct: 340 PDVVTYGVVVNCMCKSGRLDEAMEYLEFCRVNGVAVNAMLYSSLIDGLGKAGRVHEAEKL 399

Query: 384 FHEMIKNEWQP-----------------------------------TPLNCATAITMLLD 408
           F EM+K    P                                   T       I  L  
Sbjct: 400 FEEMVKKGCPPDSYCYNALIDALAKCGKTDEALAFFKRMEDEGCDQTVYTYTIMINGLFR 459

Query: 409 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
             + E A+++W+ +++ GI P  A+   L +GL   G+++   +  +E+
Sbjct: 460 EHKNEEALKMWDMMIDKGITPTAAAFRALSIGLCLSGKVARACKLLDEL 508



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 82/391 (20%), Positives = 152/391 (38%), Gaps = 54/391 (13%)

Query: 80  TPDLVHEVLQLS--YDSPSSAVDFFRWAGRGQRLSPYAWNLM-----VDVLGKNGRFEQM 132
           +P+ V  VL+       P  A+ FF WAG+ ++   Y  NL      +DVL  NG  + +
Sbjct: 60  SPNFVSFVLKSMELQKRPDLALKFFTWAGKQKK---YTHNLQCYVSSIDVLAINGDLDNV 116

Query: 133 WNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
            +     +  G L ++    S+  S+   G  +E +  +  M  +GVE  +   N LL+ 
Sbjct: 117 KSVFCKFRGMGFLMNVSAANSLIKSFGSLGMVEELLWVWRGMKENGVEPSLFTYNFLLNG 176

Query: 192 ICRQE--NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW 249
           +          R LE +   K  + PD  ++  +++G+ + G  ++A + F +M  R   
Sbjct: 177 LVNSVFIESAERVLEVMENGK--IGPDVVTYNTMIKGYCQVGKTQKAFEKFRDMELR--- 231

Query: 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV 309
              +V   +   +TLI+                  C+                 D    +
Sbjct: 232 ---NVAPDKITYMTLIQA-----------------CYAE--------------GDFDLCL 257

Query: 310 QLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFE 369
            L+  M   G  + P+   Y+ VIG LC        +  F++M+  G   +   Y  + +
Sbjct: 258 SLYHEMDENGLEIPPH--AYSLVIGGLCKEGKCVEGYAVFEKMIQKGCKVNVAIYTALID 315

Query: 370 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
              K   + E    F  M K   +P  +     +  +  +   + A+E   +   NG+  
Sbjct: 316 SNAKCGNMGEAMLLFERMKKEGLEPDVVTYGVVVNCMCKSGRLDEAMEYLEFCRVNGVAV 375

Query: 430 LEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
                + L+ GL   GR+ +  +  EEM+ +
Sbjct: 376 NAMLYSSLIDGLGKAGRVHEAEKLFEEMVKK 406


>gi|326505926|dbj|BAJ91202.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 669

 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 83/360 (23%), Positives = 151/360 (41%), Gaps = 21/360 (5%)

Query: 96  SSAVDFFRWA-GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP------ 148
           S A    R A   G  +  +A+N +V    + GR +    A R +    + S+P      
Sbjct: 91  SDAARVLRTAEASGAPVDVFAYNTLVAGYCRYGRLD----AARRL----IASMPVPPDAY 142

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+  I    C  G+  +A+   D M   G +  VV    LL A+C+       A+  L+ 
Sbjct: 143 TYTPIIRGLCDRGRVGDALALLDDMLQRGCQPSVVTYTVLLEAVCKSSG-FGEAMNVLDE 201

Query: 209 VK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           ++ K   P+  ++ +++ G  +EG V++A +    +   + + P+ +++Y T L  L   
Sbjct: 202 MRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRL-SSYGFQPD-IVSYTTVLKGLCAA 259

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
           ++ D+       M  + C P    F   +    +      A+Q+   M   G    PN  
Sbjct: 260 RRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCT--PNTT 317

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
           + N VI  +C    VD+ + F + M  +G  PD+++Y  +   L +  R    ++   EM
Sbjct: 318 LCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEM 377

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
           ++    P  +   T I +L      E AI++   + E G      + N L+ G    GR+
Sbjct: 378 VRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRV 437



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/324 (21%), Positives = 135/324 (41%), Gaps = 34/324 (10%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF  +   +C  G  + A+     MS HG   +    N +++AIC+Q  +   A +FLN 
Sbjct: 283 TFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQ-GRVDDAYDFLNN 341

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           +     +PD  S+  +L G  + G  E A +   EMV +    P + + + TF+  L + 
Sbjct: 342 MGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRK--NCPPNEVTFNTFICILCQK 399

Query: 268 KQVDEALKFLRVMKGENC--------------------------FPTLKFFSNALDILVK 301
             +++A+K + +M    C                          F  L    N +     
Sbjct: 400 GLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLPCEPNTITYTTL 459

Query: 302 LNDSTHAVQL---WDIMVGIGFNLMP-NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGA 357
           L    HA +L    +++ G+     P N + +N ++   C    V+      +QM+ HG 
Sbjct: 460 LTGLCHAERLDAAAELLAGMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGC 519

Query: 358 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 417
            P+ +T+N + + + K+    E  +  H ++        +  ++ + +L   D  E AI+
Sbjct: 520 TPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQ 579

Query: 418 IWNYILENGILPLEASANELLVGL 441
           + + + + G+ P     N++L  L
Sbjct: 580 MLHAVQDMGMRPKVGMYNKILFAL 603



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 127/273 (46%), Gaps = 8/273 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N  + +L + G  EQ    + +M E G  + + T+ ++   +C  G+ D A+  F+ + 
Sbjct: 389 FNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLP 448

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
               E + +   +LL+ +C  E   + A      ++K    +  +F +L+  + ++G VE
Sbjct: 449 ---CEPNTITYTTLLTGLCHAERLDAAAELLAGMIQKDCPLNAVTFNVLVSFFCQKGFVE 505

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           EA +   +M+E       +++ + T L  + +    +EAL+ L  +  +        +S+
Sbjct: 506 EAMELVNQMME--HGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSS 563

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
            +D+L + + +  A+Q+   +  +G  + P + MYN ++  LC   + D    FF  MV 
Sbjct: 564 VVDVLSREDRTEEAIQMLHAVQDMG--MRPKVGMYNKILFALCKRCETDQAIDFFAYMVS 621

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
           +G  P+  TY ++ E L     + E      E+
Sbjct: 622 NGCMPNESTYIILIEGLAHEGLLKEARYVLSEL 654



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 70/316 (22%), Positives = 128/316 (40%), Gaps = 13/316 (4%)

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDP-DGDSFAIL 223
           EA    +  S  G   DV     L+  +CR+  +TS A   L   +    P D  ++  L
Sbjct: 57  EAARLVETSSSRGEAPDVYLCTKLIRNLCRR-GRTSDAARVLRTAEASGAPVDVFAYNTL 115

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           + G+ + G ++ A +    M       P     Y   +  L    +V +AL  L  M   
Sbjct: 116 VAGYCRYGRLDAARRLIASMPV-----PPDAYTYTPIIRGLCDRGRVGDALALLDDMLQR 170

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
            C P++  ++  L+ + K +    A+ + D M   G    PN++ YN +I  +C    VD
Sbjct: 171 GCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCT--PNIVTYNVIINGMCREGRVD 228

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
           +     +++  +G  PD ++Y  + + L   +R  +V+  F EM+  +  P  +     +
Sbjct: 229 DAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLV 288

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LN 459
                    E AI++   + ++G  P     N ++  +   GR+ D   F   M     N
Sbjct: 289 RFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCN 348

Query: 460 RRILIYEVTMHKLKKA 475
              + Y   +  L +A
Sbjct: 349 PDTISYTTVLRGLCRA 364



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 105/246 (42%), Gaps = 7/246 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF +     C  G  ++A+   ++M  +G    +V  N+L+   C Q  +   ALE  N 
Sbjct: 388 TFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQ-GRVDSALELFNN 446

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           +    +P+  ++  LL G      ++ A +    M+++    P + + +   +    +  
Sbjct: 447 LP--CEPNTITYTTLLTGLCHAERLDAAAELLAGMIQK--DCPLNAVTFNVLVSFFCQKG 502

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
            V+EA++ +  M    C P L  F+  LD + K  +S  A++L   +V  G +L  + I 
Sbjct: 503 FVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSL--DTIT 560

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           Y++V+ +L   D  +   +    +   G  P    YN I   L K     +   FF  M+
Sbjct: 561 YSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQAIDFFAYMV 620

Query: 389 KNEWQP 394
            N   P
Sbjct: 621 SNGCMP 626



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 61/153 (39%)

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           P+   Y  +I  LC+   V +     D M+  G  P  +TY ++ E + K+    E    
Sbjct: 139 PDAYTYTPIIRGLCDRGRVGDALALLDDMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNV 198

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
             EM      P  +     I  +      + A EI N +   G  P   S   +L GL  
Sbjct: 199 LDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCA 258

Query: 444 LGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
             R  DV+    EM++++ +  EVT   L + F
Sbjct: 259 ARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFF 291


>gi|225431703|ref|XP_002264696.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial [Vitis vinifera]
 gi|296088528|emb|CBI37519.3| unnamed protein product [Vitis vinifera]
          Length = 525

 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 113/463 (24%), Positives = 193/463 (41%), Gaps = 28/463 (6%)

Query: 34  RPTRPRFPTHLDAPYISSSARIICEIL--AHASSDDIESALACTGIIPTPDLVHEVLQLS 91
           +P      T L +   S  A +I +IL   H     +ES+L   GI  +  LVH+ L   
Sbjct: 34  QPPDDALSTGLPSLQPSYDADLISKILLQHHNPFHAMESSLQLNGIALSTHLVHQTLLRL 93

Query: 92  YDSPSSAVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLP 148
            +    A+ FF WA      S    ++NL++D+L K  +F+  W  +  M ++ +  +  
Sbjct: 94  RNVSKIALSFFLWAKDQAHHSHDVVSYNLIIDILAKVRQFDVAWQFIIEMDQNSLEPTST 153

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN--SLLSAICRQENQTSRALEFL 206
           TF  +      AG   +AV +FD MS   VE+D  + +   LL  + +       A +  
Sbjct: 154 TFRILIRRSVSAGLTRQAVRAFDDMSCF-VEKDADSDDFCYLLDTLSKY-GYVKLASQIF 211

Query: 207 NRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLI 265
           N+ K   + +   + IL+ GW K   V  A +  GEMVER  E N   V+ Y   L  + 
Sbjct: 212 NQRKFKFEANAKMYTILIYGWCKINRVSIAERLLGEMVERGIEAN---VVTYNVLLNGIC 268

Query: 266 RG----------KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
           R           + + +A K L  M+ +   P +  +S  + +  + +     +    +M
Sbjct: 269 RRASLHPDDRFERTIRDAEKVLDEMRQKGIEPDVTSYSIVIHVYSRAHKPELTLDKLRMM 328

Query: 316 VGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 375
              G  + P +  Y +V+  LC+   +++       MV  G  P + TYN  F+     K
Sbjct: 329 KDKG--IWPTVATYTSVVKCLCSCGRLEDAEELVSDMVKDGVSPSAATYNCFFKEYRGRK 386

Query: 376 RVHEVEKFFHEMIKNEWQPTP--LNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 433
                 + + +M K E+   P        + M +  +  EI  EIW+ +  +G  P   S
Sbjct: 387 DSDNALRLYRKM-KEEYSCLPDMHTYNILVGMFVKLNRMEIVQEIWDDMKTSGAGPDLDS 445

Query: 434 ANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
              L+ GL    +  +   F  EM+ +  L  ++T   L +  
Sbjct: 446 YTLLIHGLCEKQKWKEACHFFVEMIEKGYLPQKITFETLYRGL 488



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/241 (21%), Positives = 92/241 (38%), Gaps = 21/241 (8%)

Query: 259 TFLITLIRGKQVDEALKFLRVMKGENCFPTLKF----FSNALDILVKLNDSTHAVQLWDI 314
           TF I + R        + +R     +CF         F   LD L K      A Q+++ 
Sbjct: 154 TFRILIRRSVSAGLTRQAVRAFDDMSCFVEKDADSDDFCYLLDTLSKYGYVKLASQIFN- 212

Query: 315 MVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN 374
                F    N  MY  +I   C  + V    R   +MV  G   + +TYN++   + + 
Sbjct: 213 --QRKFKFEANAKMYTILIYGWCKINRVSIAERLLGEMVERGIEANVVTYNVLLNGICRR 270

Query: 375 KRVH----------EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 424
             +H          + EK   EM +   +P   + +  I +   A +PE+ ++    + +
Sbjct: 271 ASLHPDDRFERTIRDAEKVLDEMRQKGIEPDVTSYSIVIHVYSRAHKPELTLDKLRMMKD 330

Query: 425 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMR 484
            GI P  A+   ++  L + GRL D      +M+   +     T +     F+ E R  +
Sbjct: 331 KGIWPTVATYTSVVKCLCSCGRLEDAEELVSDMVKDGVSPSAATYN----CFFKEYRGRK 386

Query: 485 D 485
           D
Sbjct: 387 D 387


>gi|357505881|ref|XP_003623229.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498244|gb|AES79447.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 770

 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 80/366 (21%), Positives = 165/366 (45%), Gaps = 8/366 (2%)

Query: 98  AVDFFRWAGRGQ-RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFD 155
           A + F+    G+ + +   ++ ++D   KNG  E+ +  +  M++ G+   +  ++++  
Sbjct: 183 AKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGLEGDVFVYSALIS 242

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN--QTSRALEFLNRVKKIV 213
            +C  G  +     F+ M    V  +VV  + L++A+C+++   + ++ L+ +   K  V
Sbjct: 243 GFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLDTMTGCK--V 300

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
            PD  ++ +L +G  K G   +A K    MV+R E  P +V  Y   +  L +  +VD+A
Sbjct: 301 RPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGE-EPNNV-TYNAIINGLCKEGRVDDA 358

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
           L  L  M  +   P +  +S  +  L  +     AV L ++++   F++ P++  +N VI
Sbjct: 359 LGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMSKEFHIKPDVFAFNLVI 418

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
             LC    + +  R +  MV  G   + +TYN++ +  +   ++ +  + + + + +   
Sbjct: 419 QELCKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAGKLTKALELWKDAVDSGIS 478

Query: 394 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 453
           P        I  L       IA  ++N    +G  P  +  N L+  L     +   R  
Sbjct: 479 PNAATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYNTLMASLCRESSVEQARNL 538

Query: 454 AEEMLN 459
            +EM N
Sbjct: 539 FQEMRN 544



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 143/327 (43%), Gaps = 10/327 (3%)

Query: 138 VMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           +MK    L++  F  +   +C +G   +A+  F +M  + +  D V+ N++++ +C+ + 
Sbjct: 120 IMKRGFHLNVYNFNLLLKGFCQSGDSHKAMDLFCMMKRNCLIPDCVSYNTVINGLCKGK- 178

Query: 198 QTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE-HVL 255
           +   A E    +K     P+  +F+ L++G+ K G+VEE    FG + E  +   E  V 
Sbjct: 179 RLVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEG---FGLLEEMEKMGLEGDVF 235

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
            Y   +        ++   +    M  +N  P +  +S  ++ L K      A Q+ D M
Sbjct: 236 VYSALISGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLDTM 295

Query: 316 VGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 375
            G    + P+++ Y  +   L  N    +  +  D MV  G  P+++TYN I   L K  
Sbjct: 296 TGC--KVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKEG 353

Query: 376 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL--ENGILPLEAS 433
           RV +       M K   +P  +  +T +  L    + + A+++ N ++  E  I P   +
Sbjct: 354 RVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMSKEFHIKPDVFA 413

Query: 434 ANELLVGLRNLGRLSDVRRFAEEMLNR 460
            N ++  L    RL   +R    M+ R
Sbjct: 414 FNLVIQELCKQRRLRHAKRVYYTMVER 440



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 75/365 (20%), Positives = 160/365 (43%), Gaps = 15/365 (4%)

Query: 108 GQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGK 162
           G ++ P   A+ ++ D L KNGR       + +M + G    P   T+ +I +  C  G+
Sbjct: 297 GCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRG--EEPNNVTYNAIINGLCKEGR 354

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI---VDPDGDS 219
            D+A+   + M+  G + DVV  ++L+  +C    +   A++ LN +      + PD  +
Sbjct: 355 VDDALGILETMAKKGKKPDVVTYSTLVKGLC-GVGKIDEAVDLLNLLMSKEFHIKPDVFA 413

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           F ++++   K+  +  A + +  MVER    P +++ Y   +   +   ++ +AL+  + 
Sbjct: 414 FNLVIQELCKQRRLRHAKRVYYTMVER--GFPSNIVTYNILIDGYLSAGKLTKALELWKD 471

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
                  P    ++  ++ L K+   + A  L++     G    P +  YN ++  LC  
Sbjct: 472 AVDSGISPNAATYTVLINGLCKMQMLSIAKGLFNKKRASGTR--PTVSEYNTLMASLCRE 529

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
             V+     F +M      PD +++N+I +  +K   V   ++   EM+     P  +  
Sbjct: 530 SSVEQARNLFQEMRNANHDPDVVSFNIIIDGTLKAGDVESAKELLLEMLNMNLVPDNITF 589

Query: 400 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
           +  I   L   + + A  ++  ++  G +P     + LL G    G+   V    ++M +
Sbjct: 590 SILINRFLKLGQLDEAASLYERMVSCGHVPDAVLFDSLLKGYSLKGKTEKVVSMLQQMAD 649

Query: 460 RRILI 464
           + +++
Sbjct: 650 KDVVL 654



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 86/432 (19%), Positives = 159/432 (36%), Gaps = 86/432 (19%)

Query: 75  TGIIPTPDLV-HEVLQLSYDSPSSAVDFFR----WAGRGQRLSPYAWNLMVDVLGKNGRF 129
           TG    PD+V + VL         A D  +       RG+  +   +N +++ L K GR 
Sbjct: 296 TGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKEGRV 355

Query: 130 EQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM---SMHGVEQDVVAV 185
           +     +  M + G    + T++++    CG GK DEAV   +++     H ++ DV A 
Sbjct: 356 DDALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMSKEFH-IKPDVFAF 414

Query: 186 NSLLSAICRQE----------------------------------NQTSRALEF-LNRVK 210
           N ++  +C+Q                                    + ++ALE   + V 
Sbjct: 415 NLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAGKLTKALELWKDAVD 474

Query: 211 KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270
             + P+  ++ +L+ G  K   +  A   F +  +R       V  Y T + +L R   V
Sbjct: 475 SGISPNAATYTVLINGLCKMQMLSIAKGLFNK--KRASGTRPTVSEYNTLMASLCRESSV 532

Query: 271 DEALKFLRVMKGENCFP-----------TLK------------------------FFSNA 295
           ++A    + M+  N  P           TLK                         FS  
Sbjct: 533 EQARNLFQEMRNANHDPDVVSFNIIIDGTLKAGDVESAKELLLEMLNMNLVPDNITFSIL 592

Query: 296 LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
           ++  +KL     A  L++ MV  G   +P+ +++++++         + V     QM   
Sbjct: 593 INRFLKLGQLDEAASLYERMVSCGH--VPDAVLFDSLLKGYSLKGKTEKVVSMLQQMADK 650

Query: 356 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 415
               DS   + I  CL    +  ++EK   +  ++      + C   + M L+   P+ A
Sbjct: 651 DVVLDSKLTSTILACLCNMSKDVDIEKILPKFSQHTSVGASIKC-NELLMKLNKVHPDNA 709

Query: 416 -IEIWNYILENG 426
            I + N  +  G
Sbjct: 710 NILVANTAMGTG 721



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 73/357 (20%), Positives = 142/357 (39%), Gaps = 45/357 (12%)

Query: 146 SLPTFAS---IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRA 202
           S+P+++S   + D+   A  YD  +     M+   V     ++++L+ +    + + S A
Sbjct: 55  SIPSYSSCNTLIDNLRKAKHYDHVISVHSKMASVSVFPCFTSLSALIESFVNTQ-KPSFA 113

Query: 203 LEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFL 261
              L  + K+    +  +F +LL+G+ + G+  +A   F  M++R    P+ V +Y T +
Sbjct: 114 FGVLGLIMKRGFHLNVYNFNLLLKGFCQSGDSHKAMDLFC-MMKRNCLIPDCV-SYNTVI 171

Query: 262 ITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFN 321
             L +GK++ EA +  + MKG  C                                    
Sbjct: 172 NGLCKGKRLVEAKELFKEMKGGEC------------------------------------ 195

Query: 322 LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 381
             PN + ++A+I   C N DV+  F   ++M   G   D   Y+ +         +   +
Sbjct: 196 -KPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGLEGDVFVYSALISGFCSKGDIERGK 254

Query: 382 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 441
           + F+EM++    P  +  +  +  L    + + A ++ + +    + P   +   L  GL
Sbjct: 255 ELFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLDTMTGCKVRPDVVAYTVLADGL 314

Query: 442 RNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQ 498
              GR SD  +  + M+ R      VT + +      E R + D    LE   K  +
Sbjct: 315 SKNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKEGR-VDDALGILETMAKKGK 370


>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
          Length = 814

 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 90/405 (22%), Positives = 171/405 (42%), Gaps = 43/405 (10%)

Query: 92  YDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPT 149
           Y     A D F   A +GQ    +++N+M++     G    M +   +M  DG+     T
Sbjct: 337 YGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYT 396

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F  +  +Y   G  D+A++ F+ M  HGV+ DVV   ++++A+CR         +F   +
Sbjct: 397 FNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMI 456

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
            + V PD  ++  L++G+   G++ +A +   E++                      G  
Sbjct: 457 DQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMN--------------------NGMH 496

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY 329
           +D                 + FFS+ ++ L KL     A  ++D+ V +G  L P+ ++Y
Sbjct: 497 LD-----------------IVFFSSIINNLCKLGRVMDAQNIFDLTVNVG--LHPDAVVY 537

Query: 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389
           + ++   C    ++   R FD MV  G  P+ + Y  +     K  R+ E    F EM++
Sbjct: 538 SMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQ 597

Query: 390 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 449
              +P+ +  +  I  L  A     A   ++ + E+GI     + N +L GL       +
Sbjct: 598 RGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAMDICTYNIVLRGLFKNRCFDE 657

Query: 450 VRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLER 492
                +E+    + I  +T++ +    +   R    +D+F S+ R
Sbjct: 658 AIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISR 702



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 92/415 (22%), Positives = 174/415 (41%), Gaps = 57/415 (13%)

Query: 94  SPSSAVDFF-RWAGRGQR---LSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LS 146
            P+ AV  F R A R Q    LSP  + + +++D   +  R E        +   G+ ++
Sbjct: 86  GPALAVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVN 145

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMH-----GVEQDVVAVNSLLSAICRQ--ENQT 199
           +     + + +C A + DEA+   D++ +H     G   DV + + LL ++C Q    Q 
Sbjct: 146 IIIANHLLEGFCEAKRTDEAL---DIL-LHRTPELGCVPDVFSYSILLKSLCDQGKSGQA 201

Query: 200 SRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYET 259
              L  +     +  P+  ++  +++G+ KEG+V +A   F EMV+R    P  ++ Y +
Sbjct: 202 DDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQR--GIPPDLVTYNS 259

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFP--------------------TLKFF------- 292
            +  L + + +D+A  FLR M  +   P                     ++ F       
Sbjct: 260 VVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHS 319

Query: 293 --------SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
                   S  +  L K      A  ++D M   G N  P++  YN ++        + +
Sbjct: 320 ILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQN--PDVFSYNIMLNGYATKGCLVD 377

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
           +   FD M+  G  PD  T+N++ +       + +    F+EM  +  +P  +   T I 
Sbjct: 378 MTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIA 437

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
            L    + + A+E +N +++ G+ P + + N L+ G    G L   +    E++N
Sbjct: 438 ALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMN 492



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 120/310 (38%), Gaps = 48/310 (15%)

Query: 190 SAICRQENQTSRALEFLNRVK------KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
           SA CR  +  + A+   NR        +++ P   ++AIL++   +    E A   FG++
Sbjct: 80  SAACR--SGPALAVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQL 137

Query: 244 VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-NCFPTLKFFSNALDILVKL 302
           + R       ++A    L      K+ DEAL  L     E  C P +  +S  L  L   
Sbjct: 138 L-RTGLRVNIIIA-NHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQ 195

Query: 303 NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSL 362
             S  A  L  +M   G    PN++ YN VI       DV+     F +MV  G  PD +
Sbjct: 196 GKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLV 255

Query: 363 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 422
           TYN +   L K + + + E F  +M+     P                        W Y 
Sbjct: 256 TYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNN----------------------WTY- 292

Query: 423 LENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF--YNES 480
                       N L+ G  + G+  +  R  +EM    IL   VT+  L  +   Y + 
Sbjct: 293 ------------NNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKI 340

Query: 481 RSMRDIFDSL 490
           +  RD+FD++
Sbjct: 341 KEARDVFDTM 350



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 132/332 (39%), Gaps = 40/332 (12%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLN 207
           T+A + D    A + + A+  F  +   G+  +++  N LL   C +  +T  AL+  L+
Sbjct: 113 TYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFC-EAKRTDEALDILLH 171

Query: 208 RVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
           R  ++   PD  S++ILL+    +G   +A+     M E                     
Sbjct: 172 RTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAE--------------------- 210

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNL 326
                          G  C P +  ++  +D   K  D   A  L+  MV  G  + P+L
Sbjct: 211 --------------GGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRG--IPPDL 254

Query: 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 386
           + YN+V+  LC    +D    F  QMV     P++ TYN +        +  E  + F E
Sbjct: 255 VTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKE 314

Query: 387 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 446
           M ++   P  +  +  +  L    + + A ++++ +   G  P   S N +L G    G 
Sbjct: 315 MRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGC 374

Query: 447 LSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 478
           L D+    + ML   I     T + L KA+ N
Sbjct: 375 LVDMTDLFDLMLGDGIAPDFYTFNVLIKAYAN 406



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/240 (20%), Positives = 100/240 (41%), Gaps = 6/240 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
            ++ + D YC  GK ++A+  FD M   G+E +VV   +L++  C+          F   
Sbjct: 536 VYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREM 595

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           +++ + P    ++I+++G  + G    A   F EM E        +  Y   L  L + +
Sbjct: 596 LQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTE--SGIAMDICTYNIVLRGLFKNR 653

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFN-LMPNLI 327
             DEA+   + ++  N    +   +  +D + +      A    D+   I  + L+P+++
Sbjct: 654 CFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEA---KDLFASISRSRLVPSVV 710

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            Y+ +I  L     V+     F  M   G  P+S   N +   L+K   +     +  ++
Sbjct: 711 TYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAGAYLSKI 770



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 73/358 (20%), Positives = 133/358 (37%), Gaps = 73/358 (20%)

Query: 108 GQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
           G  ++P  Y +N+++      G  ++       M++ GV   + T+ ++  + C  GK D
Sbjct: 387 GDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMD 446

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQT---------------------SRAL 203
           +A+  F+ M   GV  D  A N L+   C   +                       S  +
Sbjct: 447 DAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSII 506

Query: 204 EFLNRVKKIVD--------------PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW 249
             L ++ +++D              PD   +++L++G+   G +E+A + F  MV     
Sbjct: 507 NNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVS--AG 564

Query: 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL---------- 299
              +V+ Y T +    +  ++DE L   R M      P+   +S  +D L          
Sbjct: 565 IEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAK 624

Query: 300 VKLNDSTHAVQLWDI------MVGI-----------------GFNLMPNLIMYNAVIGLL 336
           VK ++ T +    DI      + G+                   N+  N+I  N +I  +
Sbjct: 625 VKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGM 684

Query: 337 CNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
                V+     F  +      P  +TY+++   LIK   V E E  F  M     +P
Sbjct: 685 FQTRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEP 742



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 58/271 (21%), Positives = 106/271 (39%), Gaps = 8/271 (2%)

Query: 43  HLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSY---DSPSSAV 99
           HLD  + SS    +C++     + +I       G+ P   +V+ +L   Y        A+
Sbjct: 496 HLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDA-VVYSMLMDGYCLVGKMEKAL 554

Query: 100 DFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSY 157
             F      G   +   +  +V+   K GR ++  +  R M + G+  S   ++ I D  
Sbjct: 555 RVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGL 614

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG 217
             AG+   A + F  M+  G+  D+   N +L  + +          F       V  + 
Sbjct: 615 FQAGRTVPAKVKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINI 674

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            +   +++G  +   VEEA   F   + R    P  V+ Y   +  LI+   V+EA    
Sbjct: 675 ITLNTMIDGMFQTRRVEEAKDLFAS-ISRSRLVPS-VVTYSIMITNLIKEGLVEEAEDMF 732

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHA 308
             M+   C P  +  ++ +  L+K N+   A
Sbjct: 733 SSMQNAGCEPNSRLLNHVVRELLKKNEIVRA 763



 Score = 38.5 bits (88), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 40/228 (17%), Positives = 95/228 (41%), Gaps = 5/228 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +++++D     G+ E+       M   G+  ++  + ++ + YC  G+ DE +  F  M 
Sbjct: 537 YSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREML 596

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G++   +  + ++  + +        ++F    +  +  D  ++ I+L G  K    +
Sbjct: 597 QRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAMDICTYNIVLRGLFKNRCFD 656

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           EA   F E+  R      +++   T +  + + ++V+EA      +      P++  +S 
Sbjct: 657 EAIFLFKEL--RAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSI 714

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
            +  L+K      A  ++  M   G    PN  + N V+  L   +++
Sbjct: 715 MITNLIKEGLVEEAEDMFSSMQNAGCE--PNSRLLNHVVRELLKKNEI 760


>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
 gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
          Length = 573

 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 89/371 (23%), Positives = 164/371 (44%), Gaps = 11/371 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSF-DVM 173
           +  +VD L ++G+ ++    VR MK  GV     TF+++   +C A K DEA+  + +++
Sbjct: 116 YTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEIL 175

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV--KKIVDPDGDSFAILLEGWEKEG 231
           +    + DVV   +L+   C+  N   +A++ L  +  +K V P+  +++ LL G  K G
Sbjct: 176 TSSSWKPDVVTYTALIDGFCKSGN-LEKAMKMLGVMEGRKCV-PNVVTYSSLLHGLCKAG 233

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           ++++A   F  M  +      +V+ Y T +  L    +VD A   +  M    C P    
Sbjct: 234 DLDQALDLFRRMTSK--GCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVS 291

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           ++  LD   +L     A QL+  M     + +P+ I Y  ++   CN   ++      + 
Sbjct: 292 YNALLDGYCRLGRIEEAKQLFKEMAT--KSCLPDRITYTCLVRGFCNASRLEEARFLLEN 349

Query: 352 M-VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
           M    G  PD +TY+++     + KR  E  +F  EMI     P  +  ++ I  L  A 
Sbjct: 350 MKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAG 409

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 470
             + A+E+   ++   + P   + N ++  L  LG + +  +    M    +    VT  
Sbjct: 410 RVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYT 469

Query: 471 KLKKAFYNESR 481
            L + F    R
Sbjct: 470 TLLEGFSRTGR 480



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 153/339 (45%), Gaps = 8/339 (2%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           ++ T+  I D +C A +  +A+  F+ M    V  +    N +++ +C+    TS+A E 
Sbjct: 6   TVVTWTIIIDGFCKANQLKQALACFEKMR-EFVAPNERTYNVVVNGLCKA-RLTSKAYEV 63

Query: 206 LNRVK--KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT 263
           L  ++  K V PD  +++ ++ G+ K+G ++ A +   EMV R    P+ V+ Y + +  
Sbjct: 64  LKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPD-VVTYTSVVDG 122

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW-DIMVGIGFNL 322
           L R  ++D A + +R MK +   P    FS  +           A++L+ +I+    +  
Sbjct: 123 LCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWK- 181

Query: 323 MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
            P+++ Y A+I   C + +++   +    M      P+ +TY+ +   L K   + +   
Sbjct: 182 -PDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALD 240

Query: 383 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 442
            F  M      P  +   T I  L  A + + A  + + +      P   S N LL G  
Sbjct: 241 LFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYC 300

Query: 443 NLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
            LGR+ + ++  +EM  +  L   +T   L + F N SR
Sbjct: 301 RLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASR 339



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 129/308 (41%), Gaps = 39/308 (12%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMK-EDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +  ++D   K+G  E+    + VM+    V ++ T++S+    C AG  D+A+  F  M+
Sbjct: 187 YTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMT 246

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G   +VV   +L+  +C      +  L           PD  S+  LL+G+ + G +E
Sbjct: 247 SKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIE 306

Query: 235 EANKTFGEMV------ERFEW-----------------------------NPEHVLAYET 259
           EA + F EM       +R  +                             +P+ V+ Y  
Sbjct: 307 EAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPD-VVTYSI 365

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG 319
            +    R K+  EA +F++ M   N  P    +S+ +D L K     HA+++   MV   
Sbjct: 366 VVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMV--N 423

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
             + P++  +N+VIG LC   D+D  ++    M  HG  P  +TY  + E   +  R+  
Sbjct: 424 KRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEI 483

Query: 380 VEKFFHEM 387
             + F  M
Sbjct: 484 AYELFEVM 491



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 78/179 (43%), Gaps = 9/179 (5%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T++S+ D  C AG+ D A+     M    VE  V   NS++ A+CR  +        +  
Sbjct: 397 TYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAM 456

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM-------VERFEWNPEHVLAYETFL 261
               ++P   ++  LLEG+ + G +E A + F  M              PE   A+   +
Sbjct: 457 AAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRKKAKKSSSAANLVPEQ--AFSALI 514

Query: 262 ITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF 320
             L + +++D+A+  +  ++   C P  +     +D L++   +  A +L + +  +G 
Sbjct: 515 RGLCKAREIDKAMAVVEELRSRECEPAEEDCLAIVDGLLRAGRTEEAGKLINSISKVGL 573


>gi|302785101|ref|XP_002974322.1| hypothetical protein SELMODRAFT_30949 [Selaginella moellendorffii]
 gi|300157920|gb|EFJ24544.1| hypothetical protein SELMODRAFT_30949 [Selaginella moellendorffii]
          Length = 522

 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 116/247 (46%), Gaps = 10/247 (4%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F  +    C AGK  EA   +  +        VV  NSL+  + + +    +ALE  +R 
Sbjct: 4   FGFLVTGLCKAGKISEATDHYQRLRKSLRFLSVVVYNSLIDGLVKAK-LVDKALEIFSRD 62

Query: 210 --KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
             + +  P+  ++  L+ G  K G + EA + F +M+ER  + P HV+ Y T +  L + 
Sbjct: 63  MDEALCQPNSHTYGALVSGLCKAGRIAEACELFQQMIER-RYTP-HVVLYTTVIDGLCKA 120

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
           +Q D+A  +L  M+     P +  +S  +D L  +    +A +L   +   G N  P+++
Sbjct: 121 RQFDKACSYLEKMES----PDIVTYSAFIDGLCNVGKVDYAFELLKQIQERG-NARPDVV 175

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
           +Y   I  LC    VDN    F +M   G  P+++TYN +   L  +K V    + F EM
Sbjct: 176 LYTIFIKGLCKAGQVDNAVELFYKMEDIGCPPNAVTYNSLMRALAWHKSVDAARRLFTEM 235

Query: 388 IKNEWQP 394
           I+   +P
Sbjct: 236 IRKGCEP 242



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 150/365 (41%), Gaps = 57/365 (15%)

Query: 96  SSAVDFFRWAGRGQR-LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED--GVLSLP---T 149
           S A D ++   +  R LS   +N ++D L K    ++   A+ +   D    L  P   T
Sbjct: 18  SEATDHYQRLRKSLRFLSVVVYNSLIDGLVKAKLVDK---ALEIFSRDMDEALCQPNSHT 74

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           + ++    C AG+  EA   F  M        VV   +++  +C+   Q  +A  +L   
Sbjct: 75  YGALVSGLCKAGRIAEACELFQQMIERRYTPHVVLYTTVIDGLCK-ARQFDKACSYL--- 130

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
           +K+  PD  +++  ++G    G V+ A +   ++ ER    P+ VL Y  F+  L +  Q
Sbjct: 131 EKMESPDIVTYSAFIDGLCNVGKVDYAFELLKQIQERGNARPDVVL-YTIFIKGLCKAGQ 189

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY 329
           VD                      NA+++  K+ D                   PN + Y
Sbjct: 190 VD----------------------NAVELFYKMED---------------IGCPPNAVTY 212

Query: 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLT------YNMIFECLIKNKRVHEVEKF 383
           N+++  L  +  VD   R F +M+  G  PD  T      Y  +    ++++R  EV++ 
Sbjct: 213 NSLMRALAWHKSVDAARRLFTEMIRKGCEPDGATYPTVGMYATLVRAFLRDERAMEVDEL 272

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
             +M++           T + ML  + + +I++ +    LE G      +  E++ GL  
Sbjct: 273 VKDMVRRGCSINHHLWDTLVRMLFTSGKLKISLTVAEQALERGCEIHVLTYYEIIRGLVR 332

Query: 444 LGRLS 448
           LG++S
Sbjct: 333 LGKVS 337


>gi|225465635|ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial [Vitis vinifera]
 gi|296085293|emb|CBI29025.3| unnamed protein product [Vitis vinifera]
          Length = 854

 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 94/420 (22%), Positives = 170/420 (40%), Gaps = 61/420 (14%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYD 164
           GRG  +  +  +++V    K G  ++ +  +  M++ G+ L+  TF  +   +    + D
Sbjct: 262 GRGW-VDGHVLSILVLTFSKCGEVDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVD 320

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAIL 223
           +A+  F  M   G   DV   ++L+  +C ++ +  +AL  L+ +K++ +DPD    + L
Sbjct: 321 KALQLFKKMQKSGFAPDVSVYDALIGGLCAKK-EIEKALHLLSEMKELGIDPDIQILSKL 379

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           +    +E ++    +   E +E  +     +L Y + L  L+ GK VD+A   LR M G+
Sbjct: 380 IAYCSEEVDIY---RLIEERLEDLD-TEAMLLLYNSVLNGLVNGKSVDKAYYLLRAMTGD 435

Query: 284 N---------------------------------------------------CFPTLKFF 292
           N                                                   C   +  +
Sbjct: 436 NYTDNFEVNKFFMVKEMVRPDTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLY 495

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +N +D L   N       L   M G GF   P    +N++ G LC  +DV        +M
Sbjct: 496 NNLIDKLSNSNRLEECYLLLKEMKGSGFR--PTQFTHNSIFGCLCRREDVTGALDMVREM 553

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
             HG  P    Y ++ + L K KR  E   F  EM++  + P  +  + AI   +     
Sbjct: 554 RVHGHEPWIKHYTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAV 613

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
           + A+EI+  I   G  P   + N L+ G   + R+S+     +EM+ + ++   VT + L
Sbjct: 614 DQALEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLL 673



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 125/298 (41%), Gaps = 6/298 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           +F+ + D  C  GK D A+  F  M   G +Q+V+  N+L+  +    N+       L  
Sbjct: 459 SFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKL-SNSNRLEECYLLLKE 517

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           +K     P   +   +     +  +V  A     EM  R   +   +  Y   +  L + 
Sbjct: 518 MKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREM--RVHGHEPWIKHYTLLVKQLCKR 575

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
           K+  EA  FL  M  E   P +  +S A+D  VK+     A++++  +   G+   P+++
Sbjct: 576 KRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGY--CPDVV 633

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            YN +I   C    V       D+MV  G  P  +TYN++ +   KN  + +       M
Sbjct: 634 AYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRM 693

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
           +  E +P  +   T I  L +A  P+ AI +WN +   G  P   S   L+ GL   G
Sbjct: 694 VGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIHGLCKCG 751



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 117/252 (46%), Gaps = 8/252 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           + L+V  L K  R  +  N +  M  +G L  +  +++  D +      D+A+  F  + 
Sbjct: 565 YTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDIC 624

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNV 233
             G   DVVA N+L++  C+ + + S A + L+  V K + P   ++ +L++GW K G++
Sbjct: 625 ARGYCPDVVAYNTLINGFCKVK-RVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDI 683

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           ++A      MV + E  P +V+ Y T +  L    + D+A+     M+G+ C P    F 
Sbjct: 684 DQAFHCLSRMVGK-EREP-NVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISFI 741

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +  L K      A+  +  M   G    P+ I+Y A+I    +N +    F    +MV
Sbjct: 742 ALIHGLCKCGWPDAALLYFREM---GERETPDTIVYVALITSFISNKNPTLAFEILKEMV 798

Query: 354 FHGAFPDSLTYN 365
             G FPD L  N
Sbjct: 799 AKGKFPDPLDKN 810



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/304 (22%), Positives = 134/304 (44%), Gaps = 7/304 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++++++D L   G+ +   +  R M   G   ++  + ++ D    + + +E  +    M
Sbjct: 459 SFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEECYLLLKEM 518

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
              G        NS+   +CR+E+ T  AL+ +  ++    +P    + +L++   K   
Sbjct: 519 KGSGFRPTQFTHNSIFGCLCRREDVTG-ALDMVREMRVHGHEPWIKHYTLLVKQLCKRKR 577

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
             EA     EMV R  + P+ ++AY   +   ++ K VD+AL+  R +      P +  +
Sbjct: 578 SAEACNFLAEMV-REGFLPD-IVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAY 635

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  ++   K+   + A  + D MV  G  L+P+++ YN +I   C N D+D  F    +M
Sbjct: 636 NTLINGFCKVKRVSEAHDILDEMVAKG--LVPSVVTYNLLIDGWCKNGDIDQAFHCLSRM 693

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
           V     P+ +TY  + + L    R  +    ++EM      P  ++    I  L     P
Sbjct: 694 VGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIHGLCKCGWP 753

Query: 413 EIAI 416
           + A+
Sbjct: 754 DAAL 757



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 76/349 (21%), Positives = 159/349 (45%), Gaps = 35/349 (10%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y++N +++ + K+G  + +   ++ M + G      T  S+  +YC + K+D+A+  F+ 
Sbjct: 200 YSFNCLLEAISKSGSIDLVEMRLKEMCDSGWEPDKYTLTSVLQAYCNSRKFDKALSVFNE 259

Query: 173 MSMHG-VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKE 230
           +   G V+  V+++  L  + C    +  +A E + R++ + +  +  +F +L+ G+ ++
Sbjct: 260 IYGRGWVDGHVLSILVLTFSKC---GEVDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQ 316

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
             V++A + F +M ++  + P+ V  Y+  +  L   K++++AL  L  MK     P ++
Sbjct: 317 SRVDKALQLFKKM-QKSGFAPD-VSVYDALIGGLCAKKEIEKALHLLSEMKELGIDPDIQ 374

Query: 291 FFSNALDILVKLNDSTHAVQ--LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
             S  +    +  D    ++  L D+      +    L++YN+V+  L N   VD  +  
Sbjct: 375 ILSKLIAYCSEEVDIYRLIEERLEDL------DTEAMLLLYNSVLNGLVNGKSVDKAYYL 428

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
              M       D+ T N             EV KFF  M+K   +P   + +  I  L +
Sbjct: 429 LRAMT-----GDNYTDNF------------EVNKFF--MVKEMVRPDTTSFSIVIDGLCN 469

Query: 409 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
             + ++A+ ++  ++  G        N L+  L N  RL +     +EM
Sbjct: 470 TGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEECYLLLKEM 518



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 79/338 (23%), Positives = 139/338 (41%), Gaps = 42/338 (12%)

Query: 98  AVDFFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFD 155
           A+  FR   R G + +   +N ++D L  + R E+ +  ++ MK  G      T  SIF 
Sbjct: 476 ALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEECYLLLKEMKGSGFRPTQFTHNSIFG 535

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVD 214
             C       A+     M +HG E  +     L+  +C+++ +++ A  FL   V++   
Sbjct: 536 CLCRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQLCKRK-RSAEACNFLAEMVREGFL 594

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           PD  +++  ++G+ K   V++A + F ++  R  + P+ V+AY T +    + K+V EA 
Sbjct: 595 PDIVAYSAAIDGFVKIKAVDQALEIFRDICAR-GYCPD-VVAYNTLINGFCKVKRVSEAH 652

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
             L  M  +   P++  ++  +D   K  D   A      MVG      PN+I Y  +I 
Sbjct: 653 DILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRMVGK--EREPNVITYTTLID 710

Query: 335 LLCNNDDVDNVFRFFDQM--------------VFHGAF--------------------PD 360
            LCN    D+    +++M              + HG                      PD
Sbjct: 711 GLCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIHGLCKCGWPDAALLYFREMGERETPD 770

Query: 361 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
           ++ Y  +    I NK      +   EM+     P PL+
Sbjct: 771 TIVYVALITSFISNKNPTLAFEILKEMVAKGKFPDPLD 808


>gi|147828617|emb|CAN73046.1| hypothetical protein VITISV_008668 [Vitis vinifera]
          Length = 477

 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 88/380 (23%), Positives = 162/380 (42%), Gaps = 16/380 (4%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRV---MKE-DGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           ++ + +    GR  +  +AVRV   MKE +   S  ++ ++F    G  +   A+  +  
Sbjct: 86  DIFLSICRAYGRVHKPLDAVRVFRKMKEYECEPSQKSYITVFAILVGENQLKLALRFYRY 145

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEG 231
           M   G+   V ++N L+ A+C+       AL     +  +   P   ++  L+ G  + G
Sbjct: 146 MREMGIPPSVASLNVLIKALCKNSGTMDAALRIFREMPNRGCPPHSYTYGTLIXGLCRLG 205

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            + EA + F EM E    +P  V+ Y + +  L + K +D A++ L  M  +   P +  
Sbjct: 206 KIGEAKELFKEM-ETKACSPT-VVTYXSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFT 263

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           +S+ +D   K   S+ A++L D+MV      +PN+I Y+ ++  LC    +       D+
Sbjct: 264 YSSLMDGHCKSGCSSRALELLDMMVS--RRHLPNMITYSTLVHGLCKEGKLQEAVEILDR 321

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA------TAITM 405
           M   G  PD+  Y  I        + HE   F  EM+     P  L  +        +  
Sbjct: 322 MKLQGLRPDAGLYGKIISGFCDICKFHEAANFLDEMVLGGISPNRLTWSLHVRIHNIVVQ 381

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 465
            L  + P  A +++  +   GI     + + L+    N G L       +EM+    +  
Sbjct: 382 GLCTEHPNRAFQLYLSMRTRGISIDAKTFDSLVNYFCNKGDLHKAAHLVDEMVLDGCIPD 441

Query: 466 EVTMHKLKKAFYNESRSMRD 485
           E T + +  AF++  R +R+
Sbjct: 442 EXTWNAVVCAFWDR-RKVRE 460



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 76/354 (21%), Positives = 141/354 (39%), Gaps = 43/354 (12%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEA 166
           G R S   ++LM+  L     F      +  MKE+   ++   F SI  +Y    K  +A
Sbjct: 45  GFRHSHQTFSLMISRLVSANHFRLAEELLCRMKEEKCNITEDIFLSICRAYGRVHKPLDA 104

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLE 225
           V  F  M  +  E    +  ++  AI   ENQ   AL F   ++++ + P   S  +L++
Sbjct: 105 VRVFRKMKEYECEPSQKSYITVF-AILVGENQLKLALRFYRYMREMGIPPSVASLNVLIK 163

Query: 226 GWEK-EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
              K  G ++ A + F EM  R    P H   Y T +  L R  ++ EA +  + M+ + 
Sbjct: 164 ALCKNSGTMDAALRIFREMPNR--GCPPHSYTYGTLIXGLCRLGKIGEAKELFKEMETKA 221

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
           C PT+                                     + Y ++I  LC + D+D+
Sbjct: 222 CSPTV-------------------------------------VTYXSLIHGLCQSKDLDS 244

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
             R  ++M   G  P+  TY+ + +   K+       +    M+     P  +  +T + 
Sbjct: 245 AIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYSTLVH 304

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
            L    + + A+EI + +   G+ P      +++ G  ++ +  +   F +EM+
Sbjct: 305 GLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISGFCDICKFHEAANFLDEMV 358


>gi|449446442|ref|XP_004140980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 77/359 (21%), Positives = 153/359 (42%), Gaps = 23/359 (6%)

Query: 116 WNLMVDVLGKNGR------FEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVM 168
           +N+++  +   G       FE    A   M   G VL+     S     CG GK+++A  
Sbjct: 416 YNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYK 475

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
               M  +G   D    + ++  +C      +    F       V PD  ++ IL++ + 
Sbjct: 476 VIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFS 535

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           K G +++A+    EMV R    P  V+ Y T +   ++ K+V  A +   +M  + CFP 
Sbjct: 536 KAGIIKQAHNWLDEMV-RDGCEPT-VVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPN 593

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVG------------IGFNLM--PNLIMYNAVIG 334
           +  ++  +D   K  +   A Q++  M G            I  N+   PN++ Y A++ 
Sbjct: 594 VITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVD 653

Query: 335 LLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
            LC    V +     + M   G  P+++ Y+ + +   K  ++ E ++ FH+M+++ + P
Sbjct: 654 GLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVEHGYNP 713

Query: 395 TPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 453
                ++ I  L      ++ +++ + +LEN   P      E++ GL  + +  +  + 
Sbjct: 714 NVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKL 772



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 96/453 (21%), Positives = 170/453 (37%), Gaps = 66/453 (14%)

Query: 1   MEVMDESPDFVIKNKIIPSSSSTTTSPTSHNPHRPTRP-----RFPTHLDAPYISSSARI 55
           ME  +  P +V+ N +I S  S    P         +         T L+   + S AR 
Sbjct: 404 MEKCECKPGYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARC 463

Query: 56  ICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA---GRGQRLS 112
           +C       +  +   +   G +P      EV+    ++      FF +    G G    
Sbjct: 464 LCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPD 523

Query: 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFD 171
            Y + +++D   K G  +Q  N +  M  DG   ++ T+ ++  +Y  A K   A   F+
Sbjct: 524 VYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFE 583

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD-PDGD------------ 218
           +M   G   +V+   +L+   C+  N   +A +   R++   D PD D            
Sbjct: 584 LMIAKGCFPNVITYTALIDGYCKSGN-IEKACQIYARMRGDADIPDVDMYFKIKNNVAEK 642

Query: 219 ----SFAILLE-----------------------------------GWEKEGNVEEANKT 239
               ++  L++                                   G+ K   ++EA + 
Sbjct: 643 PNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEV 702

Query: 240 FGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299
           F +MVE   +NP +V  Y + +  L + K++D  LK L  M   +C P +  ++  +D L
Sbjct: 703 FHKMVEH-GYNP-NVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGL 760

Query: 300 VKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFP 359
            K+  +  A +L  +M   G    PN++ Y A+I        VD     F +M   G  P
Sbjct: 761 SKVAKTDEAYKLMLMMEEKGCK--PNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAP 818

Query: 360 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 392
           + +TY ++         + E      EM +  W
Sbjct: 819 NFVTYTVLINHCCATGHLDEAYALLEEMKQTYW 851



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/357 (22%), Positives = 144/357 (40%), Gaps = 14/357 (3%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAV 167
           G  +  +        L K G++ +  + +   KED V +   +  +    C A  ++EA+
Sbjct: 271 GLSMDEFTLGFFAQALCKVGKWREALSLIE--KEDFVPNTILYNKMISGLCEASFFEEAM 328

Query: 168 MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEG 226
              + M       +V     LL   C  + Q  R    L+  + +   P    F  L+  
Sbjct: 329 DFLNRMRSTSCIPNVQTYRILLCG-CLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHA 387

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
           + K  +   A K   +M E+ E  P +V+ Y   + ++  G ++   + F    K  N  
Sbjct: 388 YCKSDDFSYAYKLLKKM-EKCECKPGYVV-YNILIGSICSGGELPGPVTFELAEKAYNEM 445

Query: 287 PTLKFFSNALDI------LVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
            +     N +++      L        A ++   M+G GF  +P+   Y+ VIG LCN  
Sbjct: 446 LSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGF--VPDTSTYSEVIGFLCNAS 503

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
            V+N F  F +M   G  PD  TY ++ +C  K   + +   +  EM+++  +PT +   
Sbjct: 504 RVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYT 563

Query: 401 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           T I   L A +  +A E++  ++  G  P   +   L+ G    G +    +    M
Sbjct: 564 TLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARM 620



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 93/446 (20%), Positives = 171/446 (38%), Gaps = 62/446 (13%)

Query: 81  PDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQ------- 131
           PDLV E+L     SP   V FF WAGR  G   +P  +  ++DV  + G +++       
Sbjct: 138 PDLVVEILSF-LKSPELCVKFFLWAGRQIGYDHTPAVYIALLDVF-ERGSYDRVPEEFLR 195

Query: 132 -------------------------MWNAVRVMKEDGVL-------SLPTFASIFDSYCG 159
                                    +WN    ++E G L       +  T+ ++   +  
Sbjct: 196 EIRGDDKEVLGKLLNVLIRKCCRNGLWNV--ALEELGRLKDFGYKPTRMTYNALVQVFLR 253

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
           A K D A +    MS  G+  D   +     A+C+   +   AL  + +   +  P+   
Sbjct: 254 ADKLDTAQLVHREMSELGLSMDEFTLGFFAQALCKV-GKWREALSLIEKEDFV--PNTIL 310

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           +  ++ G  +    EEA      M  R      +V  Y   L   +  KQ+    + L +
Sbjct: 311 YNKMISGLCEASFFEEAMDFLNRM--RSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSM 368

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
           M  E C+P+   F++ +    K +D ++A +L   M        P  ++YN +IG +C+ 
Sbjct: 369 MIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKC--ECKPGYVVYNILIGSICSG 426

Query: 340 DDVDNVFRF------FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
            ++     F      +++M+  G   + +       CL    +  +  K  HEM+ N + 
Sbjct: 427 GELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFV 486

Query: 394 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 453
           P     +  I  L +A   E A  ++  +   G++P   +   L+      G +     +
Sbjct: 487 PDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNW 546

Query: 454 AEEMLNR----RILIYEVTMHKLKKA 475
            +EM+       ++ Y   +H   KA
Sbjct: 547 LDEMVRDGCEPTVVTYTTLIHAYLKA 572


>gi|302784708|ref|XP_002974126.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
 gi|300158458|gb|EFJ25081.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
          Length = 538

 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 146/320 (45%), Gaps = 16/320 (5%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT----FASIFDSYCGAGKY 163
           G + +P  +  ++  L + G  ++   A+RVM E   L LPT      +I    C A + 
Sbjct: 153 GCKPNPITYGTLIQHLSRAGEIDE---ALRVMIEQRSLELPTDVITCTTIVGGLCKASRL 209

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN--RVKKIVDPDGDSFA 221
           D+A+   + M   GV  + V  ++L+    RQ  +  R + F    + +K    +  ++ 
Sbjct: 210 DDALKFMEEMRQMGVRPNEVTYSNLVHGF-RQHGELDRVIRFFEEEKARKGGSLEAAAYP 268

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
             L+   K G ++ A K+  E+  R       V+ Y   + T  R  Q D +L+ L  M+
Sbjct: 269 GYLDALCKAGYLDRARKSVEEL--RQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMR 326

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
                P +  +S  +++L K      A +L ++M   G    PN++ YN+V+  LC +  
Sbjct: 327 RNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSP--PNVVTYNSVMDGLCKSGK 384

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ-PTPLNCA 400
           +D V R ++ M+     PD +TY++I   L K   +    K F E+IK+  + P     +
Sbjct: 385 MDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLF-ELIKSSREGPDAAAYS 443

Query: 401 TAITMLLDADEPEIAIEIWN 420
             IT L  A + E A  +++
Sbjct: 444 MVITSLCRAGKLEEACGMYH 463



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/338 (19%), Positives = 160/338 (47%), Gaps = 6/338 (1%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDV 172
           + + ++++ L ++ + +      + MK +G    P T+ ++      AG+ DEA+     
Sbjct: 124 FTYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIE 183

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEG 231
                +  DV+   +++  +C+  ++   AL+F+  ++++ V P+  +++ L+ G+ + G
Sbjct: 184 QRSLELPTDVITCTTIVGGLCKA-SRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHG 242

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            ++   + F E   R   + E   AY  +L  L +   +D A K +  ++     P +  
Sbjct: 243 ELDRVIRFFEEEKARKGGSLEAA-AYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVT 301

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           +S  ++   +      +++L + M   G    P+++ Y+ +I +LC      + FR  + 
Sbjct: 302 YSMLINTFARAGQFDASLELLEDMRRNGVK--PDVVTYSTLINVLCKERKFQDAFRLLEL 359

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M   G+ P+ +TYN + + L K+ ++ EV + +  M+K+   P  +  +  +  L  A  
Sbjct: 360 MEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGM 419

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 449
            + A++++  I  +   P  A+ + ++  L   G+L +
Sbjct: 420 LDSAVKLFELIKSSREGPDAAAYSMVITSLCRAGKLEE 457



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 87/384 (22%), Positives = 161/384 (41%), Gaps = 17/384 (4%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT---FASIFDSY 157
           F   A RG       + L+VD L   G   Q    VR +   GV + PT   +  I    
Sbjct: 42  FTLLASRGVVYGETTYKLVVDGLCGAGMANQALELVREL--SGVYT-PTVFIYNGIITGL 98

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPD 216
           C A +  +A    + M    +  +V     LL+ +CR  N+T  A E    +K+    P+
Sbjct: 99  CRASRVMDAYKVLEKMVEESIVPNVFTYTILLNGLCRS-NKTKLAREVFQEMKRNGCKPN 157

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
             ++  L++   + G ++EA +   E  +R    P  V+   T +  L +  ++D+ALKF
Sbjct: 158 PITYGTLIQHLSRAGEIDEALRVMIE--QRSLELPTDVITCTTIVGGLCKASRLDDALKF 215

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI-MVGIGFNLMPNLIMYNAVIGL 335
           +  M+     P    +SN +    +  +    ++ ++      G +L      Y   +  
Sbjct: 216 MEEMRQMGVRPNEVTYSNLVHGFRQHGELDRVIRFFEEEKARKGGSL--EAAAYPGYLDA 273

Query: 336 LCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 395
           LC    +D   +  +++   G  PD +TY+M+     +  +     +   +M +N  +P 
Sbjct: 274 LCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPD 333

Query: 396 PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 455
            +  +T I +L    + + A  +   +   G  P   + N ++ GL   G++ +V R  E
Sbjct: 334 VVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYE 393

Query: 456 EMLNRR----ILIYEVTMHKLKKA 475
            ML  R    ++ Y + M+ L KA
Sbjct: 394 MMLKSRCSPDVVTYSIIMNGLSKA 417



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 92/224 (41%), Gaps = 9/224 (4%)

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
           A+      L R  +  E ++   ++           +   +D L     +  A++L   +
Sbjct: 21  AFTLLATKLFRRSKFSEVVRLFTLLASRGVVYGETTYKLVVDGLCGAGMANQALELVREL 80

Query: 316 VGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 375
            G+     P + +YN +I  LC    V + ++  ++MV     P+  TY ++   L ++ 
Sbjct: 81  SGV---YTPTVFIYNGIITGLCRASRVMDAYKVLEKMVEESIVPNVFTYTILLNGLCRSN 137

Query: 376 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA--- 432
           +     + F EM +N  +P P+   T I  L  A E + A+ +   ++E   L L     
Sbjct: 138 KTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRV---MIEQRSLELPTDVI 194

Query: 433 SANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
           +   ++ GL    RL D  +F EEM    +   EVT   L   F
Sbjct: 195 TCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGF 238



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 53/246 (21%), Positives = 103/246 (41%), Gaps = 5/246 (2%)

Query: 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK 275
           D  +F +L     +     E  + F  +  R     E    Y+  +  L      ++AL+
Sbjct: 18  DSQAFTLLATKLFRRSKFSEVVRLFTLLASRGVVYGETT--YKLVVDGLCGAGMANQALE 75

Query: 276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGL 335
            +R + G    PT+  ++  +  L + +    A ++ + MV    +++PN+  Y  ++  
Sbjct: 76  LVRELSGVYT-PTVFIYNGIITGLCRASRVMDAYKVLEKMVE--ESIVPNVFTYTILLNG 132

Query: 336 LCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 395
           LC ++        F +M  +G  P+ +TY  + + L +   + E  +   E    E    
Sbjct: 133 LCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQRSLELPTD 192

Query: 396 PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 455
            + C T +  L  A   + A++    + + G+ P E + + L+ G R  G L  V RF E
Sbjct: 193 VITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGELDRVIRFFE 252

Query: 456 EMLNRR 461
           E   R+
Sbjct: 253 EEKARK 258


>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
 gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 77/351 (21%), Positives = 163/351 (46%), Gaps = 7/351 (1%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y+ N++++ L +    +   + +  M + G+     TF ++ +  C  GK  EAV  F+ 
Sbjct: 129 YSLNILINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNE 188

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEG 231
           M   G E +V++  ++++ +C+  N TS A++   ++++    P+  +++ +++   K+ 
Sbjct: 189 MVKRGHEPNVISYTTVINGLCKTGN-TSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDR 247

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            V +A +   EMVER    P +V  Y + +       Q++EA +  + M G +  P    
Sbjct: 248 LVNDAMEFLSEMVER--GIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVT 305

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           F+  +D L K    + A  +++ M   G    P++  YNA++   C    ++   + F+ 
Sbjct: 306 FTILVDGLCKEGMVSEARLVFETMTEKGVE--PDISTYNALMDGYCLQRLMNEAKKVFEI 363

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M+  G  P + +YN++     K++R+ E +    EM      P  +  +T +  L     
Sbjct: 364 MIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGR 423

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
           P+ A+ ++  +   G  P   +   LL G    G L +  +  + M  +++
Sbjct: 424 PKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKL 474



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 83/356 (23%), Positives = 157/356 (44%), Gaps = 11/356 (3%)

Query: 98  AVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFD 155
           AV+ F     RG   +  ++  +++ L K G      +  + M+++G   ++ T+++I D
Sbjct: 182 AVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIID 241

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR--QENQTSRALEFLNRVKKIV 213
           S C     ++A+     M   G+  +V   NS++   C   Q N+ +R   F   V + V
Sbjct: 242 SLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRL--FKEMVGRDV 299

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
            P+  +F IL++G  KEG V EA   F  M E+    P+ +  Y   +      + ++EA
Sbjct: 300 MPNTVTFTILVDGLCKEGMVSEARLVFETMTEK-GVEPD-ISTYNALMDGYCLQRLMNEA 357

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
            K   +M  + C P    ++  ++   K      A  L   M     N  P+ + Y+ ++
Sbjct: 358 KKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALN--PDTVTYSTLM 415

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
             LC           F +M  +G  P+ +TY ++ +   K+  + E  K    M + + +
Sbjct: 416 QGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLE 475

Query: 394 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 449
           P  ++    I  +  A + E+A E+++ +  +G  P   +   ++ GL   G LSD
Sbjct: 476 PNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEG-LSD 530



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/368 (21%), Positives = 157/368 (42%), Gaps = 6/368 (1%)

Query: 96  SSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASI 153
           S AVD F+     G + +   ++ ++D L K+         +  M E G+  ++ T+ SI
Sbjct: 215 SMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSI 274

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV 213
              +C  G+ +EA   F  M    V  + V    L+  +C++   +   L F    +K V
Sbjct: 275 VHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGV 334

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
           +PD  ++  L++G+  +  + EA K F  M+ +      H  +Y   +    + +++DEA
Sbjct: 335 EPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAH--SYNILINGYCKSRRMDEA 392

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
              L  M  +   P    +S  +  L +L     A+ L+  M   G +  PNL+ Y  ++
Sbjct: 393 KSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPH--PNLVTYVILL 450

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
              C +  +D   +    M      P+ + Y ++ E +    ++   ++ F ++  +  +
Sbjct: 451 DGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTR 510

Query: 394 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 453
           P        I  LL     + A +++  + ++G LP   S N ++ G       S   R 
Sbjct: 511 PDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRL 570

Query: 454 AEEMLNRR 461
            +EM+ +R
Sbjct: 571 IDEMVGKR 578



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 67/316 (21%), Positives = 130/316 (41%), Gaps = 41/316 (12%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  F     S+    +Y   V   + M +  V  +V ++N L++ +CR  N    ++  
Sbjct: 92  SVVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSLNILINCLCRL-NHVDFSVSV 150

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L ++ K+ + PD  +F  L+ G   EG ++EA + F EMV+R   +  +V++Y T +  L
Sbjct: 151 LGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKR--GHEPNVISYTTVINGL 208

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
            +      A+   + M+   C                                      P
Sbjct: 209 CKTGNTSMAVDVFKKMEQNGC-------------------------------------KP 231

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           N++ Y+ +I  LC +  V++   F  +MV  G  P+  TYN I        +++E  + F
Sbjct: 232 NVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLF 291

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
            EM+  +  P  +     +  L        A  ++  + E G+ P  ++ N L+ G    
Sbjct: 292 KEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQ 351

Query: 445 GRLSDVRRFAEEMLNR 460
             +++ ++  E M+ +
Sbjct: 352 RLMNEAKKVFEIMIRK 367



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 115/263 (43%), Gaps = 6/263 (2%)

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           V++A  +F  MV R    P  V+ +  FL +  + KQ    +     M        +   
Sbjct: 74  VDDALASFYRMV-RINPRPS-VVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSL 131

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  ++ L +LN    +V +   M  +G +  P+ I +NA+I  LCN   +      F++M
Sbjct: 132 NILINCLCRLNHVDFSVSVLGKMFKLGIH--PDAITFNALINGLCNEGKIKEAVELFNEM 189

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
           V  G  P+ ++Y  +   L K          F +M +N  +P  +  +T I  L      
Sbjct: 190 VKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLV 249

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
             A+E  + ++E GI P   + N ++ G  NLG+L++  R  +EM+ R ++   VT   L
Sbjct: 250 NDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTIL 309

Query: 473 KKAFYNES--RSMRDIFDSLERR 493
                 E      R +F+++  +
Sbjct: 310 VDGLCKEGMVSEARLVFETMTEK 332


>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
          Length = 827

 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 90/405 (22%), Positives = 171/405 (42%), Gaps = 43/405 (10%)

Query: 92  YDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPT 149
           Y     A D F   A +GQ    +++N+M++     G    M +   +M  DG+     T
Sbjct: 350 YGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYT 409

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F  +  +Y   G  D+A++ F+ M  HGV+ DVV   ++++A+CR         +F   +
Sbjct: 410 FNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMI 469

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
            + V PD  ++  L++G+   G++ +A +   E++                      G  
Sbjct: 470 DQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMN--------------------NGMH 509

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY 329
           +D                 + FFS+ ++ L KL     A  ++D+ V +G  L P+ ++Y
Sbjct: 510 LD-----------------IVFFSSIINNLCKLGRVMDAQNIFDLTVNVG--LHPDAVVY 550

Query: 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389
           + ++   C    ++   R FD MV  G  P+ + Y  +     K  R+ E    F EM++
Sbjct: 551 SMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQ 610

Query: 390 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 449
              +P+ +  +  I  L  A     A   ++ + E+GI     + N +L GL       +
Sbjct: 611 RGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDE 670

Query: 450 VRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLER 492
                +E+    + I  +T++ +    +   R    +D+F S+ R
Sbjct: 671 AIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISR 715



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 92/415 (22%), Positives = 174/415 (41%), Gaps = 57/415 (13%)

Query: 94  SPSSAVDFF-RWAGRGQR---LSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LS 146
            P+ AV  F R A R Q    LSP  + + +++D   +  R E        +   G+ ++
Sbjct: 99  GPALAVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVN 158

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMH-----GVEQDVVAVNSLLSAICRQ--ENQT 199
           +     + + +C A + DEA+   D++ +H     G   DV + + LL ++C Q    Q 
Sbjct: 159 IIIANHLLEGFCEAKRTDEAL---DIL-LHRTPELGCVPDVFSYSILLKSLCDQGKSGQA 214

Query: 200 SRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYET 259
              L  +     +  P+  ++  +++G+ KEG+V +A   F EMV+R    P  ++ Y +
Sbjct: 215 DDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQR--GIPPDLVTYNS 272

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFP--------------------TLKFF------- 292
            +  L + + +D+A  FLR M  +   P                     ++ F       
Sbjct: 273 VVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHS 332

Query: 293 --------SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
                   S  +  L K      A  ++D M   G N  P++  YN ++        + +
Sbjct: 333 ILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQN--PDVFSYNIMLNGYATKGCLVD 390

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
           +   FD M+  G  PD  T+N++ +       + +    F+EM  +  +P  +   T I 
Sbjct: 391 MTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIA 450

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
            L    + + A+E +N +++ G+ P + + N L+ G    G L   +    E++N
Sbjct: 451 ALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMN 505



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/343 (21%), Positives = 148/343 (43%), Gaps = 11/343 (3%)

Query: 109 QRLSPYAW--NLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +R+ P  W  N ++      G++++     + M+   +L  + T + +  S C  GK  E
Sbjct: 296 KRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKE 355

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A   FD M+M G   DV + N +L+    +         F   +   + PD  +F +L++
Sbjct: 356 ARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIK 415

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
            +   G +++A   F EM  R       V+ Y T +  L R  ++D+A++    M  +  
Sbjct: 416 AYANCGMLDKAMIIFNEM--RDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGV 473

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P    ++  +           A +L   ++  G +L  +++ ++++I  LC    V + 
Sbjct: 474 APDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHL--DIVFFSSIINNLCKLGRVMDA 531

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFE--CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
              FD  V  G  PD++ Y+M+ +  CL+   ++ +  + F  M+    +P  +   T +
Sbjct: 532 QNIFDLTVNVGLHPDAVVYSMLMDGYCLV--GKMEKALRVFDAMVSAGIEPNVVVYCTLV 589

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 446
                    +  + ++  +L+ GI P     + ++ GL   GR
Sbjct: 590 NGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGR 632



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 120/310 (38%), Gaps = 48/310 (15%)

Query: 190 SAICRQENQTSRALEFLNRVK------KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
           SA CR  +  + A+   NR        +++ P   ++AIL++   +    E A   FG++
Sbjct: 93  SAACR--SGPALAVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQL 150

Query: 244 VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-NCFPTLKFFSNALDILVKL 302
           + R       ++A    L      K+ DEAL  L     E  C P +  +S  L  L   
Sbjct: 151 L-RTGLRVNIIIA-NHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQ 208

Query: 303 NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSL 362
             S  A  L  +M   G    PN++ YN VI       DV+     F +MV  G  PD +
Sbjct: 209 GKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLV 268

Query: 363 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 422
           TYN +   L K + + + E F  +M+     P                        W Y 
Sbjct: 269 TYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNN----------------------WTY- 305

Query: 423 LENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF--YNES 480
                       N L+ G  + G+  +  R  +EM    IL   VT+  L  +   Y + 
Sbjct: 306 ------------NNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKI 353

Query: 481 RSMRDIFDSL 490
           +  RD+FD++
Sbjct: 354 KEARDVFDTM 363



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 132/332 (39%), Gaps = 40/332 (12%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLN 207
           T+A + D    A + + A+  F  +   G+  +++  N LL   C +  +T  AL+  L+
Sbjct: 126 TYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFC-EAKRTDEALDILLH 184

Query: 208 RVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
           R  ++   PD  S++ILL+    +G   +A+     M E                     
Sbjct: 185 RTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAE--------------------- 223

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNL 326
                          G  C P +  ++  +D   K  D   A  L+  MV  G  + P+L
Sbjct: 224 --------------GGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRG--IPPDL 267

Query: 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 386
           + YN+V+  LC    +D    F  QMV     P++ TYN +        +  E  + F E
Sbjct: 268 VTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKE 327

Query: 387 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 446
           M ++   P  +  +  +  L    + + A ++++ +   G  P   S N +L G    G 
Sbjct: 328 MRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGC 387

Query: 447 LSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 478
           L D+    + ML   I     T + L KA+ N
Sbjct: 388 LVDMTDLFDLMLGDGIAPDFYTFNVLIKAYAN 419



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/240 (21%), Positives = 100/240 (41%), Gaps = 6/240 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
            ++ + D YC  GK ++A+  FD M   G+E +VV   +L++  C+          F   
Sbjct: 549 VYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREM 608

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           +++ + P    ++I+++G  + G    A   F EM E        +  Y   L  L + +
Sbjct: 609 LQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTE--SGIAMDICTYNIVLRGLFKNR 666

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFN-LMPNLI 327
             DEA+   + ++  N    +   +  +D + +      A    D+   I  + L+PN++
Sbjct: 667 CFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEA---KDLFASISRSRLVPNVV 723

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            Y+ +I  L     V+     F  M   G  P+S   N +   L+K   +     +  ++
Sbjct: 724 TYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAGAYLSKI 783



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 121/290 (41%), Gaps = 9/290 (3%)

Query: 109 QRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDE 165
           Q ++P  YA+N ++     +G   +    +  +  +G+ L +  F+SI ++ C  G+  +
Sbjct: 471 QGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMD 530

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A   FD+    G+  D V  + L+   C           F   V   ++P+   +  L+ 
Sbjct: 531 AQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVN 590

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR-GKQVDEALKFLRVMKGEN 284
           G+ K G ++E    F EM++R    P  +L Y   +  L + G+ V   +KF   M    
Sbjct: 591 GYCKIGRIDEGLSLFREMLQR-GIKPSTIL-YSIIIDGLFQAGRTVPAKMKF-HEMTESG 647

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
               +  ++  L  L K      A+ L+  +  +  N+  N+I  N +I  +     V+ 
Sbjct: 648 IAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAM--NVKINIITLNTMIDGMFQTRRVEE 705

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
               F  +      P+ +TY+++   LIK   V E E  F  M     +P
Sbjct: 706 AKDLFASISRSRLVPNVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEP 755



 Score = 46.6 bits (109), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 107/271 (39%), Gaps = 8/271 (2%)

Query: 43  HLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSY---DSPSSAV 99
           HLD  + SS    +C++     + +I       G+ P   +V+ +L   Y        A+
Sbjct: 509 HLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDA-VVYSMLMDGYCLVGKMEKAL 567

Query: 100 DFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSY 157
             F      G   +   +  +V+   K GR ++  +  R M + G+  S   ++ I D  
Sbjct: 568 RVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGL 627

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG 217
             AG+   A M F  M+  G+  D+   N +L  + +          F       V  + 
Sbjct: 628 FQAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINI 687

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            +   +++G  +   VEEA   F   + R    P +V+ Y   +  LI+   V+EA    
Sbjct: 688 ITLNTMIDGMFQTRRVEEAKDLFAS-ISRSRLVP-NVVTYSIMITNLIKEGLVEEAEDMF 745

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHA 308
             M+   C P  +  ++ +  L+K N+   A
Sbjct: 746 SSMQNAGCEPNSRLLNHVVRELLKKNEIVRA 776


>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
 gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 89/387 (22%), Positives = 168/387 (43%), Gaps = 13/387 (3%)

Query: 111 LSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAV 167
           LSP  Y  ++++D      R +  ++    M + G+     TF ++ +  C  GK+ +AV
Sbjct: 126 LSPDIYTLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAV 185

Query: 168 MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW 227
             FD     G +  V    ++++ +C+    T+ A  F    +    P+  ++ IL++  
Sbjct: 186 EFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSL 245

Query: 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
            K+  V EA   F  M  +   +P+ +  Y + +  L   ++  EA   L  M   N  P
Sbjct: 246 CKDKLVNEALDIFSYMKAK-RISPD-IFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMP 303

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFR 347
            +  F+  +D + K    + A  ++  M  +G    P+++ Y++++       ++    +
Sbjct: 304 NIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVE--PDVVTYSSLMYGYSLRMEIVEARK 361

Query: 348 FFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 407
            FD M+  G  PD+ +YN++ +   K KR+ E ++ F+EMI     P  +N  T I  L 
Sbjct: 362 LFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLC 421

Query: 408 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNRRIL 463
                  A +++  +  NG LP   + + LL G    G L    R    M    L   I 
Sbjct: 422 QLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIA 481

Query: 464 IYEVTMHKLKKAFYNESRSMRDIFDSL 490
           +Y + +  + K  +   +  R +F  L
Sbjct: 482 MYNILIDAMCK--FGNLKDARKLFSEL 506



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 150/335 (44%), Gaps = 10/335 (2%)

Query: 98  AVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           A+D F +  + +R+SP  + +N ++  L    R+++    +  M    ++ ++ TF  + 
Sbjct: 254 ALDIFSYM-KAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLV 312

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC-RQENQTSRALEFLNRVKKIV 213
           D+ C  GK  EA   F  M+  GVE DVV  +SL+     R E   +R L F   + K  
Sbjct: 313 DAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKL-FDAMITKGC 371

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
            PD  S+ IL++G+ K   ++EA + F EM+ +    P++V  Y T +  L +  ++ EA
Sbjct: 372 KPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQ-GLTPDNV-NYNTLIHGLCQLGRLREA 429

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
               + M      P L  +S  LD   K      A +L+ +M      L P++ MYN +I
Sbjct: 430 QDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQST--YLKPDIAMYNILI 487

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
             +C   ++ +  + F ++   G  P+   Y  I   L K   + E  + F  M  +   
Sbjct: 488 DAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDGCP 547

Query: 394 PTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 428
           P   +    I   L   +   A ++   + + G +
Sbjct: 548 PDEFSYNVIIRGFLQYKDESRAAQLIGEMRDRGFV 582



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 57/251 (22%), Positives = 97/251 (38%), Gaps = 5/251 (1%)

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR-GKQVDEALKFLRVMKGENCFPTLK 290
           N+++A  +F  M+ R E  P  ++ +   L  +++ G+     +   + M+     P + 
Sbjct: 74  NIDDALASFNHMLHR-EPLP-CIIQFTKLLSAIVKMGQYYGAVISLSKQMELAGLSPDIY 131

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
             S  +D    L     A  ++  M+ +G  L P+ + +N +I  LC          FFD
Sbjct: 132 TLSILIDCFSHLQRVDLAFSVFSKMIKLG--LQPDAVTFNTLINGLCKVGKFAQAVEFFD 189

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
                G  P   TY  I   L K          F +M +   QP  +     I  L    
Sbjct: 190 DFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDK 249

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 470
               A++I++Y+    I P   + N L+ GL N  R  +      EM +  I+    T +
Sbjct: 250 LVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFN 309

Query: 471 KLKKAFYNESR 481
            L  A   E +
Sbjct: 310 VLVDAICKEGK 320


>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
 gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
          Length = 529

 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 157/353 (44%), Gaps = 12/353 (3%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGK---NGRFEQMWNAVRVMKEDGVLSLPTFASIFDSY 157
           F R    G +LS  + N ++  L K   NG  E ++    ++K    L++ +F  + +  
Sbjct: 108 FKRAGDYGFKLSLISCNPLLSGLVKESENGDMEFVYR--EMIKRKIELNVISFNIVVNGL 165

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE--NQTSRALEFLNR-VKKIVD 214
           C  GK + A    + M + GV  +V+  N+L+   C+     +  +A   L   V K + 
Sbjct: 166 CKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGIC 225

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           P+  ++ IL++G+ K+ NV  A + FGEM +R    P +V+ Y   +  L    +VDEA+
Sbjct: 226 PNEVTYNILIDGFCKDENVSGAMRVFGEM-QRQGLRP-NVVTYNILINGLCSDGKVDEAV 283

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
                M   +  P +   +  ++   K      A+ L++ M   G +  PN + Y  +I 
Sbjct: 284 ALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVD--PNAMTYTTLID 341

Query: 335 LLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
             C +  +++ F  ++ M+  G FP+  TYN +   L +   V       +EM+  +   
Sbjct: 342 AYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSA 401

Query: 395 TPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
             +     I  L    E   A+++ + + E G+ P   + N L+ G    G L
Sbjct: 402 DVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNL 454



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/372 (22%), Positives = 159/372 (42%), Gaps = 8/372 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           R   L+  ++N++V+ L K G+  +  + +  MK  GV  ++ T+ ++ D YC  G+  +
Sbjct: 149 RKIELNVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGK 208

Query: 166 AVMSFDV---MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
              +  +   M   G+  + V  N L+   C+ EN +     F    ++ + P+  ++ I
Sbjct: 209 MYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNI 268

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+ G   +G V+EA     +MV   +  P +V+ +   +    + K V+EA+     M+ 
Sbjct: 269 LINGLCSDGKVDEAVALRDQMVSS-DLEP-NVVTHNVLINGFCKNKTVNEAINLFNDMEK 326

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
           +   P    ++  +D   K      A  L+++M+  G  + P +  YN +I  LC   DV
Sbjct: 327 QGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRG--IFPEVSTYNCLIAGLCRKGDV 384

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
                  ++MV      D +TYN++ + L K     +  K   EM +    P+ +   T 
Sbjct: 385 KAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTL 444

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
           +           A+ +   +   G      + N L+ G    GRL D      EML R +
Sbjct: 445 MDGYCREGNLRAALIVRTRMERKGKQANVVTHNVLIKGFCLKGRLEDANGLLNEMLERGL 504

Query: 463 LIYEVTMHKLKK 474
           +    T   +K+
Sbjct: 505 VPNRTTYEIIKE 516



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 77/324 (23%), Positives = 149/324 (45%), Gaps = 17/324 (5%)

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEE 235
           +G +  +++ N LLS + ++         +   +K+ ++ +  SF I++ G  K G +  
Sbjct: 114 YGFKLSLISCNPLLSGLVKESENGDMEFVYREMIKRKIELNVISFNIVVNGLCKVGKLNR 173

Query: 236 ANKTFGEMVERFE-WNPE-HVLAYETFLITLIRGKQVDEALK---FLRVMKGENCFPTLK 290
           A    G+++E  + W    +V+ Y T +    +  ++ +  K    L+ M  +   P   
Sbjct: 174 A----GDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGICPNEV 229

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
            ++  +D   K  + + A++++  M   G  L PN++ YN +I  LC++  VD      D
Sbjct: 230 TYNILIDGFCKDENVSGAMRVFGEMQRQG--LRPNVVTYNILINGLCSDGKVDEAVALRD 287

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
           QMV     P+ +T+N++     KNK V+E    F++M K    P  +   T I       
Sbjct: 288 QMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDG 347

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR----ILIYE 466
             E A  ++N +++ GI P  ++ N L+ GL   G +   R    EM++++    ++ Y 
Sbjct: 348 RMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYN 407

Query: 467 VTMHKLKKAFYNESRSMRDIFDSL 490
           + +  L K    ESR    + D +
Sbjct: 408 ILIDSLCKK--GESRKAVKLLDEM 429


>gi|297842741|ref|XP_002889252.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335093|gb|EFH65511.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 780

 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 93/393 (23%), Positives = 161/393 (40%), Gaps = 38/393 (9%)

Query: 101 FFRWAGRGQRL-SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYC 158
           FF WA R +RL S  ++ L++D+L ++   +  W  +  +K  GV +    F  +  +Y 
Sbjct: 79  FFIWASRRERLRSGESFGLVIDMLSEDNGCDLYWQTLEELKSGGVSVDSYCFCVLISAYA 138

Query: 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDG 217
             G  ++AV SF  M       DV   N +L  + R++     A    N + K    P+ 
Sbjct: 139 KMGLAEKAVESFGRMKEFDCRPDVFTYNVILRIMMREDVFFMLAFAVYNEMLKCNCSPNL 198

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERF-----------------EWNPEHV------ 254
            +F IL++G  K+G   +A K F +M  R                    +PE        
Sbjct: 199 YTFGILMDGLYKKGRTSDAQKMFDDMTGRGISPNRVTYTILISGLCQRGSPEDARKLFYE 258

Query: 255 ----------LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 304
                     +A+   L    +  ++ EA + LR+ + +     L+ +S+ +D L +   
Sbjct: 259 MKASGNYPDSVAHNALLDGFCKLGRMVEAFELLRLFEKDGFVLGLRGYSSLIDGLFRARR 318

Query: 305 STHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTY 364
            T A +L+  M  +  N+ P++I+Y  +I  L     +++  +    M   G  PD+  Y
Sbjct: 319 YTQAFELYANM--LKRNIKPDIILYTILIQGLSKAGKIEDALKLLRSMPSKGITPDTYCY 376

Query: 365 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 424
           N + + L     + E      EM + E  P        I  +        A EI+  I +
Sbjct: 377 NAVIKALCGRGLLEEGRSLQLEMSETESFPDACTHTILICSMCRNGLVRKAEEIFLEIEK 436

Query: 425 NGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           +G  P  A+ N L+ GL   G L + R    +M
Sbjct: 437 SGCSPSVATFNALIDGLCKSGELKEARLLLHKM 469



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 112/252 (44%), Gaps = 7/252 (2%)

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
           V  D   F +L+  + K G  E+A ++FG M E F+  P+ V  Y   L  ++R + V  
Sbjct: 123 VSVDSYCFCVLISAYAKMGLAEKAVESFGRMKE-FDCRPD-VFTYNVILRIMMR-EDVFF 179

Query: 273 ALKF--LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYN 330
            L F     M   NC P L  F   +D L K   ++ A +++D M G G +  PN + Y 
Sbjct: 180 MLAFAVYNEMLKCNCSPNLYTFGILMDGLYKKGRTSDAQKMFDDMTGRGIS--PNRVTYT 237

Query: 331 AVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 390
            +I  LC     ++  + F +M   G +PDS+ +N + +   K  R+ E  +      K+
Sbjct: 238 ILISGLCQRGSPEDARKLFYEMKASGNYPDSVAHNALLDGFCKLGRMVEAFELLRLFEKD 297

Query: 391 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 450
            +       ++ I  L  A     A E++  +L+  I P       L+ GL   G++ D 
Sbjct: 298 GFVLGLRGYSSLIDGLFRARRYTQAFELYANMLKRNIKPDIILYTILIQGLSKAGKIEDA 357

Query: 451 RRFAEEMLNRRI 462
            +    M ++ I
Sbjct: 358 LKLLRSMPSKGI 369



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 83/384 (21%), Positives = 155/384 (40%), Gaps = 45/384 (11%)

Query: 94  SPSSAVD-FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFA 151
           SP  A   F+     G      A N ++D   K GR  + +  +R+ ++DG VL L  ++
Sbjct: 248 SPEDARKLFYEMKASGNYPDSVAHNALLDGFCKLGRMVEAFELLRLFEKDGFVLGLRGYS 307

Query: 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-K 210
           S+ D    A +Y +A   +  M    ++ D++    L+  + +   +   AL+ L  +  
Sbjct: 308 SLIDGLFRARRYTQAFELYANMLKRNIKPDIILYTILIQGLSKA-GKIEDALKLLRSMPS 366

Query: 211 KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270
           K + PD   +  +++     G +EE      EM E  E  P+    +   + ++ R   V
Sbjct: 367 KGITPDTYCYNAVIKALCGRGLLEEGRSLQLEMSET-ESFPD-ACTHTILICSMCRNGLV 424

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL------------------- 311
            +A +    ++   C P++  F+  +D L K  +   A  L                   
Sbjct: 425 RKAEEIFLEIEKSGCSPSVATFNALIDGLCKSGELKEARLLLHKMEVGRPASLFLRLAHS 484

Query: 312 ----WDIMVGIGFNLM--------------PNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
               +D MV  G  L               P+++ YN +I   C   D+D   +  + + 
Sbjct: 485 GNRSFDTMVQSGSILKAYKNLAHFADTGNSPDIVSYNVLINGFCREGDIDGALKLLNVLQ 544

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G  PDS+TYN +   L +  R  E  K F+   K++++ +P    + +T      +  
Sbjct: 545 LKGLSPDSVTYNTLINGLHRVGREEEAFKLFYA--KDDFRHSPAVYRSLMTWSCRRRKLL 602

Query: 414 IAIEIWNYILENGILPLEASANEL 437
           +A  +W   L+      + +ANE+
Sbjct: 603 VAFNLWMKYLKKISCLDDETANEI 626


>gi|297844198|ref|XP_002889980.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335822|gb|EFH66239.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 517

 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 132/286 (46%), Gaps = 12/286 (4%)

Query: 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204
           LS+  + ++   +C AG+ ++A      MS  G E D+V  N LL+      N   RA  
Sbjct: 218 LSIVVYNALISGFCKAGRIEKAEALKSFMSKIGCEPDLVTYNVLLNYY-YDNNMLKRAEG 276

Query: 205 FLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE---HVLAYETF 260
            +   V+  +  D  S+  LL+   +   V   ++ +  M++  E  P     V++Y T 
Sbjct: 277 VMTEMVRSGIQLDAYSYNQLLK---RHCRVSHPDRCYSFMLKEME--PRGFCDVVSYSTL 331

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF 320
           + T  R     +A K    M+ +     +  F++ +   ++  +S+ A +L D M  +G 
Sbjct: 332 IETFCRASNTKKAYKLFEEMRQKGIVTNVVTFTSLIKAFLREGNSSVAKKLLDQMTELG- 390

Query: 321 NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEV 380
            L P+ I Y  ++  LC + +VD  +  F+ M+ H   PD+++YN +   L ++ RV E 
Sbjct: 391 -LSPDRIFYTTILDHLCKSGNVDKAYGIFNDMIEHEITPDAISYNSLISGLCRSGRVTEA 449

Query: 381 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 426
            K F +M   E  P  L     I  L+   +   A ++W+ +++ G
Sbjct: 450 IKLFEDMKGKECCPDELTFKFIIGGLIREKKLSAAYKVWDQMMDKG 495



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 79/396 (19%), Positives = 153/396 (38%), Gaps = 37/396 (9%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G  L P+ ++  +  L K  +FE +   +R M+  G +  +  F    D  C   K   A
Sbjct: 74  GFSLIPFTYSRFISGLCKVKKFELIDALLRDMETLGFIPDIWAFNIYLDLLCRENKVGFA 133

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLE 225
           V +F  M   G E DVV+   L++ + R   + + A+E  N  ++  V PD  + A L+ 
Sbjct: 134 VQTFFCMVQRGREPDVVSYTILINGLFRA-GKVTDAVEIWNAMIRSGVSPDNKACAALVV 192

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G      V+ A +   E ++        ++ Y   +    +  ++++A      M    C
Sbjct: 193 GLCHARKVDLAYEMVAEEIKSARVKLS-IVVYNALISGFCKAGRIEKAEALKSFMSKIGC 251

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL----------------------- 322
            P L  ++  L+     N    A  +   MV  G  L                       
Sbjct: 252 EPDLVTYNVLLNYYYDNNMLKRAEGVMTEMVRSGIQLDAYSYNQLLKRHCRVSHPDRCYS 311

Query: 323 ----------MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 372
                       +++ Y+ +I   C   +    ++ F++M   G   + +T+  + +  +
Sbjct: 312 FMLKEMEPRGFCDVVSYSTLIETFCRASNTKKAYKLFEEMRQKGIVTNVVTFTSLIKAFL 371

Query: 373 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 432
           +       +K   +M +    P  +   T +  L  +   + A  I+N ++E+ I P   
Sbjct: 372 REGNSSVAKKLLDQMTELGLSPDRIFYTTILDHLCKSGNVDKAYGIFNDMIEHEITPDAI 431

Query: 433 SANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 468
           S N L+ GL   GR+++  +  E+M  +     E+T
Sbjct: 432 SYNSLISGLCRSGRVTEAIKLFEDMKGKECCPDELT 467



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 76/367 (20%), Positives = 159/367 (43%), Gaps = 16/367 (4%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFE---QMWNAVRVMKEDGVL-SLPTFASIFDS 156
           FF    RG+     ++ ++++ L + G+     ++WNA   M   GV       A++   
Sbjct: 137 FFCMVQRGREPDVVSYTILINGLFRAGKVTDAVEIWNA---MIRSGVSPDNKACAALVVG 193

Query: 157 YCGAGKYDEAV-MSFDVMSMHGVEQDVVAVNSLLSAICRQEN-QTSRALE-FLNRVKKIV 213
            C A K D A  M  + +    V+  +V  N+L+S  C+    + + AL+ F++++    
Sbjct: 194 LCHARKVDLAYEMVAEEIKSARVKLSIVVYNALISGFCKAGRIEKAEALKSFMSKIG--C 251

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
           +PD  ++ +LL  +     ++ A     EMV           +Y   L    R    D  
Sbjct: 252 EPDLVTYNVLLNYYYDNNMLKRAEGVMTEMVR--SGIQLDAYSYNQLLKRHCRVSHPDRC 309

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
             F+        F  +  +S  ++   + +++  A +L++ M   G  ++ N++ + ++I
Sbjct: 310 YSFMLKEMEPRGFCDVVSYSTLIETFCRASNTKKAYKLFEEMRQKG--IVTNVVTFTSLI 367

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
                  +     +  DQM   G  PD + Y  I + L K+  V +    F++MI++E  
Sbjct: 368 KAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTILDHLCKSGNVDKAYGIFNDMIEHEIT 427

Query: 394 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 453
           P  ++  + I+ L  +     AI+++  +      P E +   ++ GL    +LS   + 
Sbjct: 428 PDAISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPDELTFKFIIGGLIREKKLSAAYKV 487

Query: 454 AEEMLNR 460
            ++M+++
Sbjct: 488 WDQMMDK 494



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 78/349 (22%), Positives = 150/349 (42%), Gaps = 16/349 (4%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N  + VL K  RFE      R M   G   +P T++      C   K++        M 
Sbjct: 47  YNRFIGVLVKESRFELAEAIYRDMMPMGFSLIPFTYSRFISGLCKVKKFELIDALLRDME 106

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
             G   D+ A N  L  +CR EN+   A++ F   V++  +PD  S+ IL+ G  + G V
Sbjct: 107 TLGFIPDIWAFNIYLDLLCR-ENKVGFAVQTFFCMVQRGREPDVVSYTILINGLFRAGKV 165

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL-RVMKGENCFPTLKFF 292
            +A + +  M+ R   +P++  A    ++ L   ++VD A + +   +K      ++  +
Sbjct: 166 TDAVEIWNAMI-RSGVSPDNK-ACAALVVGLCHARKVDLAYEMVAEEIKSARVKLSIVVY 223

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  +    K      A  L   M  IG    P+L+ YN ++    +N+ +        +M
Sbjct: 224 NALISGFCKAGRIEKAEALKSFMSKIGCE--PDLVTYNVLLNYYYDNNMLKRAEGVMTEM 281

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP----LNCATAITMLLD 408
           V  G   D+ +YN + +   ++ RV   ++ +  M+K E +P      ++ +T I     
Sbjct: 282 VRSGIQLDAYSYNQLLK---RHCRVSHPDRCYSFMLK-EMEPRGFCDVVSYSTLIETFCR 337

Query: 409 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           A   + A +++  + + GI+    +   L+      G  S  ++  ++M
Sbjct: 338 ASNTKKAYKLFEEMRQKGIVTNVVTFTSLIKAFLREGNSSVAKKLLDQM 386



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 102/228 (44%), Gaps = 3/228 (1%)

Query: 255 LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314
           LAY + +  L++   +D A++    M+  +       ++  + +LVK +    A  ++  
Sbjct: 10  LAYRSRIANLVKSGMIDNAVQVFDEMRHSSYRVFSSDYNRFIGVLVKESRFELAEAIYRD 69

Query: 315 MVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN 374
           M+ +GF+L+P    Y+  I  LC     + +      M   G  PD   +N+  + L + 
Sbjct: 70  MMPMGFSLIP--FTYSRFISGLCKVKKFELIDALLRDMETLGFIPDIWAFNIYLDLLCRE 127

Query: 375 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 434
            +V    + F  M++   +P  ++    I  L  A +   A+EIWN ++ +G+ P   + 
Sbjct: 128 NKVGFAVQTFFCMVQRGREPDVVSYTILINGLFRAGKVTDAVEIWNAMIRSGVSPDNKAC 187

Query: 435 NELLVGLRNLGRLS-DVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
             L+VGL +  ++       AEE+ + R+ +  V  + L   F    R
Sbjct: 188 AALVVGLCHARKVDLAYEMVAEEIKSARVKLSIVVYNALISGFCKAGR 235


>gi|302809819|ref|XP_002986602.1| hypothetical protein SELMODRAFT_124189 [Selaginella moellendorffii]
 gi|300145785|gb|EFJ12459.1| hypothetical protein SELMODRAFT_124189 [Selaginella moellendorffii]
          Length = 445

 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 85/356 (23%), Positives = 151/356 (42%), Gaps = 22/356 (6%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL--SLPTFASI-FDSYCGAGKYDEAVM 168
           S + +  +V      G F++    V   K+ G+   SL    ++    +  AG  DEA  
Sbjct: 13  SEFTYGTLVHGHCLAGEFDEAKRLVEEFKDTGMSPGSLVVLHNLMLKGFSEAGFVDEAKS 72

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
               M     + + V+ N+L+ A+C          E     K+ V P+  ++  +  G  
Sbjct: 73  HLHRMD---CKPNSVSYNTLIDALCSSGRIQEAREELQAMAKRGVAPNRVTYNAMATGLG 129

Query: 229 KEGNVEEANKTFGEM------VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           K G ++EA +  G M      +    +NP  V+ +      L +  + DEA K +  M  
Sbjct: 130 KAGLLDEAFELMGVMESAGFALTAVTFNP--VVEF------LCKSGRPDEACKVMETMLL 181

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
            N  P +   +  L    K      A+ + DIMV +GF   P ++ +NA++ L CN D +
Sbjct: 182 RNIEPNILTLNLILHAFCKAARPEEALGMTDIMVEMGF--CPTIVTFNALLELFCNTDQM 239

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
           D+  +  + M      P+ +TY+++ +   +  R+ E   F  +++   + P  L C   
Sbjct: 240 DSAAKLLETMAHSKCKPNFVTYSIMVQKFAEMGRMVEARAFLEQLVVCGYAPNLLVCNAY 299

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
           +  L    E ++A      + E G     A+ N L+ G   LGR+ +  R  EEM+
Sbjct: 300 VAGLCKTGEMDLASRFLTVMAEEGCRANTATYNSLVEGFCKLGRMDEAERVLEEMI 355



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 145/350 (41%), Gaps = 11/350 (3%)

Query: 75  TGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQM 132
           TG+ P   +V   L L   S +  VD  +         P   ++N ++D L  +GR ++ 
Sbjct: 43  TGMSPGSLVVLHNLMLKGFSEAGFVDEAKSHLHRMDCKPNSVSYNTLIDALCSSGRIQEA 102

Query: 133 WNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              ++ M + GV  +  T+ ++      AG  DEA     VM   G     V  N ++  
Sbjct: 103 REELQAMAKRGVAPNRVTYNAMATGLGKAGLLDEAFELMGVMESAGFALTAVTFNPVVEF 162

Query: 192 ICR--QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW 249
           +C+  + ++  + +E +  + + ++P+  +  ++L  + K    EEA      MVE   +
Sbjct: 163 LCKSGRPDEACKVMETM--LLRNIEPNILTLNLILHAFCKAARPEEALGMTDIMVE-MGF 219

Query: 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV 309
            P  ++ +   L       Q+D A K L  M    C P    +S  +    ++     A 
Sbjct: 220 CPT-IVTFNALLELFCNTDQMDSAAKLLETMAHSKCKPNFVTYSIMVQKFAEMGRMVEAR 278

Query: 310 QLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFE 369
              + +V  G+   PNL++ NA +  LC   ++D   RF   M   G   ++ TYN + E
Sbjct: 279 AFLEQLVVCGYA--PNLLVCNAYVAGLCKTGEMDLASRFLTVMAEEGCRANTATYNSLVE 336

Query: 370 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 419
              K  R+ E E+   EMI     P     +  I  L  A + E A  + 
Sbjct: 337 GFCKLGRMDEAERVLEEMIAEGSLPDSTTYSVLIQGLCSAGQIEHAFMVM 386



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/260 (21%), Positives = 97/260 (37%), Gaps = 9/260 (3%)

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++  L+ G    G  +EA +   E  +        V+ +   L        VDEA   L 
Sbjct: 16  TYGTLVHGHCLAGEFDEAKRLVEEFKDTGMSPGSLVVLHNLMLKGFSEAGFVDEAKSHLH 75

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            M   +C P    ++  +D L        A +    M   G  + PN + YNA+   L  
Sbjct: 76  RM---DCKPNSVSYNTLIDALCSSGRIQEAREELQAMAKRG--VAPNRVTYNAMATGLGK 130

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
              +D  F     M   G    ++T+N + E L K+ R  E  K    M+    +P  L 
Sbjct: 131 AGLLDEAFELMGVMESAGFALTAVTFNPVVEFLCKSGRPDEACKVMETMLLRNIEPNILT 190

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
               +     A  PE A+ + + ++E G  P   + N LL    N  ++    +  E M 
Sbjct: 191 LNLILHAFCKAARPEEALGMTDIMVEMGFCPTIVTFNALLELFCNTDQMDSAAKLLETMA 250

Query: 459 NRRI----LIYEVTMHKLKK 474
           + +     + Y + + K  +
Sbjct: 251 HSKCKPNFVTYSIMVQKFAE 270


>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
 gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 74/333 (22%), Positives = 146/333 (43%), Gaps = 5/333 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG      +++ +++     G  +++   ++ M+  G+  +L T+ SI    C +GK D+
Sbjct: 4   RGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDD 63

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A      M   G+  D V   +L+   C+  N  +    F    K+ + PD  ++  ++ 
Sbjct: 64  AERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVIC 123

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G  + G + EA+K F +M  R    P+ V  Y T +    +  ++++A      M     
Sbjct: 124 GLCRCGKMMEADKVFNKMFSR-GVEPDEV-TYTTLIDGYCKSGEMEKAFSLHNQMVQSGL 181

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P +  ++   D L KL     A +L   M G G  L  N+  YN+++  LC + ++   
Sbjct: 182 TPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQL--NICTYNSLVNGLCKSGNIRQA 239

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
            +  ++M   G +PD++T+  + +   K   + +  +   EM+    QPT +     +  
Sbjct: 240 VKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNG 299

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELL 438
              +   E    +  ++LE GI+P   + N L+
Sbjct: 300 FCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLM 332



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 144/347 (41%), Gaps = 6/347 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           +++++ + YC  G+  + +     M M G++ ++   NS++  +C+              
Sbjct: 12  SYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERVLREM 71

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           + + + PD   +  L++G+ K GN++ A K F EM E+    P+ + AY   +  L R  
Sbjct: 72  INQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEM-EKQRIVPDFI-AYTAVICGLCRCG 129

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           ++ EA K    M      P    ++  +D   K  +   A  L + MV  G  L PN++ 
Sbjct: 130 KMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSG--LTPNVVT 187

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           Y A+   LC    VD       +M   G   +  TYN +   L K+  + +  K   EM 
Sbjct: 188 YTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEME 247

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
                P  +   T +       E   A E+   +L+ G+ P   + N L+ G    G L 
Sbjct: 248 VAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLE 307

Query: 449 DVRRFAEEMLNRRILIYEVTMHKLKKAFY--NESRSMRDIFDSLERR 493
           D  R    ML + I+    T + L K +   N  R   +I+  +  R
Sbjct: 308 DGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCAR 354



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/335 (20%), Positives = 144/335 (42%), Gaps = 5/335 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G + + Y +N ++ +L K+G+ +     +R M   G++     + ++ D +C  G    
Sbjct: 39  KGLKPNLYTYNSIILLLCKSGKVDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQA 98

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A   FD M    +  D +A  +++  +CR          F     + V+PD  ++  L++
Sbjct: 99  AYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLID 158

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+ K G +E+A     +MV+     P +V+ Y      L +  QVD A + L  M G+  
Sbjct: 159 GYCKSGEMEKAFSLHNQMVQS-GLTP-NVVTYTALADGLCKLGQVDTANELLHEMCGKGL 216

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
              +  +++ ++ L K  +   AV+L + M   G  + P+ I +  ++   C   ++   
Sbjct: 217 QLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAG--MYPDTITFTTLMDAYCKTGEMVKA 274

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
                +M+  G  P  +T+N++      +  + + E+    M++    P      + +  
Sbjct: 275 HELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQ 334

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVG 440
               +      EI+  +   G++P   + N L+ G
Sbjct: 335 YCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKG 369



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 103/227 (45%), Gaps = 2/227 (0%)

Query: 246 RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS 305
           +F  +   V++Y T +     G ++ + LK ++ M+ +   P L  +++ + +L K    
Sbjct: 2   KFRGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKV 61

Query: 306 THAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYN 365
             A ++   M+  G  ++P+ ++Y  +I   C   ++   ++ FD+M      PD + Y 
Sbjct: 62  DDAERVLREMINQG--IVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYT 119

Query: 366 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 425
            +   L +  ++ E +K F++M     +P  +   T I     + E E A  + N ++++
Sbjct: 120 AVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQS 179

Query: 426 GILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
           G+ P   +   L  GL  LG++        EM  + + +   T + L
Sbjct: 180 GLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSL 226



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 42/181 (23%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSL----PTFASIFDSYCGA 160
            G+G +L+   +N +V+ L K+G   Q   AV++M+E  V  +     TF ++ D+YC  
Sbjct: 212 CGKGLQLNICTYNSLVNGLCKSGNIRQ---AVKLMEEMEVAGMYPDTITFTTLMDAYCKT 268

Query: 161 GKYDEA---------------VMSFDVM----SMHGVEQD----------------VVAV 185
           G+  +A               V++F+V+     M G+ +D                    
Sbjct: 269 GEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTY 328

Query: 186 NSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245
           NSL+   C + N       +     + V PD +++ IL++G  K  N++EA     EM E
Sbjct: 329 NSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMAE 388

Query: 246 R 246
           +
Sbjct: 389 K 389



 Score = 47.0 bits (110), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 53/306 (17%), Positives = 121/306 (39%), Gaps = 42/306 (13%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F +   RG       +  ++D   K+G  E+ ++    M + G+  ++ T+ ++ D  C 
Sbjct: 138 FNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCK 197

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGD 218
            G+ D A      M   G++ ++   NSL++ +C+  N   +A++ +  ++   + PD  
Sbjct: 198 LGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGN-IRQAVKLMEEMEVAGMYPDTI 256

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           +F  L++ + K G + +A++   EM++R    P  V+ +   +        +++  + L 
Sbjct: 257 TFTTLMDAYCKTGEMVKAHELLREMLDR-GLQPT-VITFNVLMNGFCMSGMLEDGERLLA 314

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            M  +   P    +++ +      N+     +++  M   G  +MP+   YN +I   C 
Sbjct: 315 WMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARG--VMPDSNTYNILIKGHCK 372

Query: 339 NDDVDNVF-----------------------------------RFFDQMVFHGAFPDSLT 363
             ++   +                                     F++M   G   D+  
Sbjct: 373 ARNMKEAWFLHKEMAEKGFNLTASSYNSIIKGFFKKKKISEARELFEEMRREGMAADAEI 432

Query: 364 YNMIFE 369
           YN+  +
Sbjct: 433 YNLFVD 438


>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g05670, mitochondrial; Flags: Precursor
 gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
          Length = 741

 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 91/391 (23%), Positives = 173/391 (44%), Gaps = 15/391 (3%)

Query: 92  YDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTF 150
           Y + ++ + F  +   G   +  ++N+++  + + GR ++  + + +M+  G    + ++
Sbjct: 225 YKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISY 284

Query: 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK 210
           +++ + YC  G+ D+     +VM   G++ +     S++  +CR          F   ++
Sbjct: 285 STVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIR 344

Query: 211 KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270
           + + PD   +  L++G+ K G++  A+K F EM  R +  P+ VL Y   +    +   +
Sbjct: 345 QGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSR-DITPD-VLTYTAIISGFCQIGDM 402

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYN 330
            EA K    M  +   P    F+  ++   K      A ++ + M+  G +  PN++ Y 
Sbjct: 403 VEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCS--PNVVTYT 460

Query: 331 AVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 390
            +I  LC   D+D+      +M   G  P+  TYN I   L K+  + E  K     +  
Sbjct: 461 TLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVK-----LVG 515

Query: 391 EWQPTPLNCATAI-TMLLDA----DEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
           E++   LN  T   T L+DA     E + A EI   +L  G+ P   + N L+ G    G
Sbjct: 516 EFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHG 575

Query: 446 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
            L D  +    ML + I     T + L K +
Sbjct: 576 MLEDGEKLLNWMLAKGIAPNATTFNSLVKQY 606



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/416 (18%), Positives = 162/416 (38%), Gaps = 42/416 (10%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           +++ +V+   + G  +++W  + VMK  G+  +   + SI    C   K  EA  +F  M
Sbjct: 283 SYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEM 342

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G+  D V   +L+   C++ +  + +  F     + + PD  ++  ++ G+ + G++
Sbjct: 343 IRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDM 402

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            EA K F EM  +    P+ V  +   +    +   + +A +    M    C P +  ++
Sbjct: 403 VEAGKLFHEMFCK-GLEPDSV-TFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYT 460

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF----- 348
             +D L K  D   A +L   M  IG  L PN+  YN+++  LC + +++   +      
Sbjct: 461 TLIDGLCKEGDLDSANELLHEMWKIG--LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFE 518

Query: 349 ------------------------------FDQMVFHGAFPDSLTYNMIFECLIKNKRVH 378
                                           +M+  G  P  +T+N++      +  + 
Sbjct: 519 AAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLE 578

Query: 379 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 438
           + EK  + M+     P      + +      +  + A  I+  +   G+ P   +   L+
Sbjct: 579 DGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLV 638

Query: 439 VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSM--RDIFDSLER 492
            G      + +     +EM  +   +   T   L K F    + +  R++FD + R
Sbjct: 639 KGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRR 694



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 74/331 (22%), Positives = 139/331 (41%), Gaps = 9/331 (2%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F   F      G   EA   F+ M  +G+   V + N  L+ + +   +T+ A+      
Sbjct: 178 FDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREF 237

Query: 210 KKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
            ++ V  +  S+ I++    + G ++EA+     ++E   + P+ V++Y T +    R  
Sbjct: 238 PEVGVCWNVASYNIVIHFVCQLGRIKEAHHLL-LLMELKGYTPD-VISYSTVVNGYCRFG 295

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           ++D+  K + VMK +   P    + + + +L ++     A + +  M+  G  ++P+ ++
Sbjct: 296 ELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQG--ILPDTVV 353

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           Y  +I   C   D+    +FF +M      PD LTY  I     +   + E  K FHEM 
Sbjct: 354 YTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMF 413

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
               +P  +     I     A   + A  + N++++ G  P   +   L+ GL   G L 
Sbjct: 414 CKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLD 473

Query: 449 DVRRFAEEM----LNRRILIYEVTMHKLKKA 475
                  EM    L   I  Y   ++ L K+
Sbjct: 474 SANELLHEMWKIGLQPNIFTYNSIVNGLCKS 504



 Score = 46.2 bits (108), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 46/213 (21%), Positives = 91/213 (42%), Gaps = 38/213 (17%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEA 166
           G + + + +N +V+ L K+G  E+    V   +  G+     T+ ++ D+YC +G+ D+A
Sbjct: 486 GLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKA 545

Query: 167 ---------------VMSFDVM----SMHGVEQD----------------VVAVNSLLSA 191
                          +++F+V+     +HG+ +D                    NSL+  
Sbjct: 546 QEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQ 605

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
            C + N  +    + +   + V PDG ++  L++G  K  N++EA   F EM  + +   
Sbjct: 606 YCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEM--KGKGFS 663

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
             V  Y   +   ++ K+  EA +    M+ E 
Sbjct: 664 VSVSTYSVLIKGFLKRKKFLEAREVFDQMRREG 696


>gi|302770855|ref|XP_002968846.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
 gi|300163351|gb|EFJ29962.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
          Length = 538

 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 146/320 (45%), Gaps = 16/320 (5%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT----FASIFDSYCGAGKY 163
           G + +P  +  ++  L + G  ++   A+RVM E   L LPT      +I    C A + 
Sbjct: 153 GCKPNPITYGTLIQHLSRAGEIDE---ALRVMIEQRSLELPTDVITCTTIVGGLCKASRL 209

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN--RVKKIVDPDGDSFA 221
           D+A+   + M   GV  + V  ++L+    RQ  +  R + F    + +K    +  ++ 
Sbjct: 210 DDALKFMEEMRQMGVRPNEVTYSNLVHGF-RQHGELDRVIRFFEEEKARKGGSLEAAAYP 268

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
             L+   K G ++ A K+  E+  R       V+ Y   + T  R  Q D +L+ L  M+
Sbjct: 269 GYLDALCKAGYLDRARKSVEEL--RQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMR 326

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
                P +  +S  +++L K      A +L ++M   G    PN++ YN+V+  LC +  
Sbjct: 327 RNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSP--PNVVTYNSVMDGLCKSGK 384

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ-PTPLNCA 400
           +D V R ++ M+     PD +TY++I   L K   +    K F E+IK+  + P     +
Sbjct: 385 MDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLF-ELIKSSREGPDAAAYS 443

Query: 401 TAITMLLDADEPEIAIEIWN 420
             IT L  A + E A  +++
Sbjct: 444 MVITSLCRAGKLEEACGMYH 463



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/338 (19%), Positives = 160/338 (47%), Gaps = 6/338 (1%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDV 172
           + + ++++ L ++ + +      + MK +G    P T+ ++      AG+ DEA+     
Sbjct: 124 FTYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIE 183

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEG 231
                +  DV+   +++  +C+  ++   AL+F+  ++++ V P+  +++ L+ G+ + G
Sbjct: 184 QRSLELPTDVITCTTIVGGLCKA-SRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHG 242

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            ++   + F E   R   + E   AY  +L  L +   +D A K +  ++     P +  
Sbjct: 243 ELDRVIRFFEEEKARKGGSLEAA-AYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVT 301

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           +S  ++   +      +++L + M   G    P+++ Y+ +I +LC      + FR  + 
Sbjct: 302 YSMLINTFARAGQFDASLELLEDMRRNGVK--PDVVTYSTLINVLCKERKFQDAFRLLEL 359

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M   G+ P+ +TYN + + L K+ ++ EV + +  M+K+   P  +  +  +  L  A  
Sbjct: 360 MEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGM 419

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 449
            + A++++  I  +   P  A+ + ++  L   G+L +
Sbjct: 420 LDSAVKLFELIKSSREGPDAAAYSMVITSLCRAGKLEE 457



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 84/381 (22%), Positives = 158/381 (41%), Gaps = 11/381 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGA 160
           F   A RG       + L+VD L   G   Q    VR +      +L  +  I    C A
Sbjct: 42  FTLLASRGVVYGETTYKLVVDGLCGAGMANQALELVRELSGVYTPTLFIYNGIITGLCRA 101

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDS 219
            +  +A    + M    +  +V     LL+ +CR  N+T  A E    +K+    P+  +
Sbjct: 102 SRVMDAYKVLEKMVEESIVPNVFTYTILLNGLCRS-NKTKLAREVFQEMKRNGCKPNPIT 160

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           +  L++   + G ++EA +   E  +R    P  V+   T +  L +  ++D+ALKF+  
Sbjct: 161 YGTLIQHLSRAGEIDEALRVMIE--QRSLELPTDVITCTTIVGGLCKASRLDDALKFMEE 218

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI-MVGIGFNLMPNLIMYNAVIGLLCN 338
           M+     P    +SN +    +  +    ++ ++      G +L      Y   +  LC 
Sbjct: 219 MRQMGVRPNEVTYSNLVHGFRQHGELDRVIRFFEEEKARKGGSL--EAAAYPGYLDALCK 276

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
              +D   +  +++   G  PD +TY+M+     +  +     +   +M +N  +P  + 
Sbjct: 277 AGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPDVVT 336

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
            +T I +L    + + A  +   +   G  P   + N ++ GL   G++ +V R  E ML
Sbjct: 337 YSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMML 396

Query: 459 NRR----ILIYEVTMHKLKKA 475
             R    ++ Y + M+ L KA
Sbjct: 397 KSRCSPDVVTYSIIMNGLSKA 417



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 92/224 (41%), Gaps = 9/224 (4%)

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
           A+      L R  +  E ++   ++           +   +D L     +  A++L   +
Sbjct: 21  AFTLLATKLFRRSKFSEVVRLFTLLASRGVVYGETTYKLVVDGLCGAGMANQALELVREL 80

Query: 316 VGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 375
            G+     P L +YN +I  LC    V + ++  ++MV     P+  TY ++   L ++ 
Sbjct: 81  SGV---YTPTLFIYNGIITGLCRASRVMDAYKVLEKMVEESIVPNVFTYTILLNGLCRSN 137

Query: 376 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA--- 432
           +     + F EM +N  +P P+   T I  L  A E + A+ +   ++E   L L     
Sbjct: 138 KTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRV---MIEQRSLELPTDVI 194

Query: 433 SANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
           +   ++ GL    RL D  +F EEM    +   EVT   L   F
Sbjct: 195 TCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGF 238



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 110/262 (41%), Gaps = 7/262 (2%)

Query: 202 ALEFLNR--VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYET 259
           A + L R  V+  V  D  +F +L     +     E  + F  +  R     E    Y+ 
Sbjct: 2   AAKLLERSVVEAGVKVDSQAFTLLATKLFRRSKFSEVVRLFTLLASRGVVYGETT--YKL 59

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG 319
            +  L      ++AL+ +R + G    PTL  ++  +  L + +    A ++ + MV   
Sbjct: 60  VVDGLCGAGMANQALELVRELSGVYT-PTLFIYNGIITGLCRASRVMDAYKVLEKMVE-- 116

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
            +++PN+  Y  ++  LC ++        F +M  +G  P+ +TY  + + L +   + E
Sbjct: 117 ESIVPNVFTYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDE 176

Query: 380 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 439
             +   E    E     + C T +  L  A   + A++    + + G+ P E + + L+ 
Sbjct: 177 ALRVMIEQRSLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVH 236

Query: 440 GLRNLGRLSDVRRFAEEMLNRR 461
           G R  G L  V RF EE   R+
Sbjct: 237 GFRQHGELDRVIRFFEEEKARK 258


>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 77/358 (21%), Positives = 152/358 (42%), Gaps = 4/358 (1%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK 162
           R   +G   S  A+N ++  L K G+ ++       MK+D   +L T+  + D  C AGK
Sbjct: 333 RQRAKGSIPSVIAYNCILTCLRKMGKVDEALRVFEEMKKDAAPNLSTYNILIDMLCRAGK 392

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
            D A    D M   G+  +V  VN ++  +C+ +        F     K+  PD  +F  
Sbjct: 393 LDCAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAIFEQMDYKVCTPDEITFCS 452

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L++G  K G V++A K + +M++       + + Y + +       + ++  K  + M  
Sbjct: 453 LIDGLGKVGRVDDAYKIYEKMLD--SDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMVN 510

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
           +NC P L+  +  +D + K  +      +++ +    F  +P+   Y+ +I  L      
Sbjct: 511 QNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKSRRF--VPDARSYSILIHGLIKAGFA 568

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
           +  +  F  M   G   D+  YN++ +   K  +V++  +   EM    ++PT +   + 
Sbjct: 569 NETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSV 628

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           I  L   D  + A  ++       I       + L+ G   +GR+ +     EE++ +
Sbjct: 629 IDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQK 686



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 74/323 (22%), Positives = 136/323 (42%), Gaps = 7/323 (2%)

Query: 107 RGQRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKY 163
           + +R  P A  +++++  L K G   + +     MKE G VL    +  + D +C  GK 
Sbjct: 544 KSRRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKV 603

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
           ++A    + M   G E  VV   S++  + + +      + F     K ++ +   ++ L
Sbjct: 604 NKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSL 663

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           ++G+ K G ++EA     E++++    P +V  + + L  L++ ++++EAL   + MK  
Sbjct: 664 IDGFGKVGRIDEAYLILEELMQK-GLTP-NVYTWNSLLDALVKAEEINEALVCFQSMKEL 721

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
            C P    +   ++ L K+     A   W  M   G  + P+ I Y  +I  L    ++ 
Sbjct: 722 KCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQG--MKPSTISYTTMISGLAKAGNIA 779

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
                FD+   +G  PDS  YN + E L    R  +    F E  +         C   +
Sbjct: 780 EAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLHIHNKTCVVLL 839

Query: 404 TMLLDADEPEIAIEIWNYILENG 426
             L   D  E A  +   + E G
Sbjct: 840 DTLHKNDCLEQAAIVGAVLRETG 862



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 109/500 (21%), Positives = 190/500 (38%), Gaps = 61/500 (12%)

Query: 36  TRPRFPTHLDA----------PYISSSARII----CEILAHAS-SDDIESALACTGIIPT 80
            R +F  HL +          PY     R I    C +L   +     E+AL+     P 
Sbjct: 5   ARTKFCKHLSSLSDNGENHEKPYTFEGNRQIVNDICNVLETGAWGPSAENALSALNFKPQ 64

Query: 81  PDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWNAVRV 138
           P+ V  VL+   D  + A+++FRW  R   L   P ++N ++ V+ +   F+ +   +  
Sbjct: 65  PEFVIGVLRRLKDV-NRAIEYFRWYERRTELPHCPESYNSLLLVMARCRNFDALDQILGE 123

Query: 139 MKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           M   G   S+ T   +  S   A K  E       M          A  +L+ A     N
Sbjct: 124 MSVAGFGPSVNTCIEMVLSCVKANKLREGFDVVQNMRKFKFRPAFSAYTTLIGAF-SAVN 182

Query: 198 QTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
            +   L    +++++  +P    F  L+ G+ KEG V+ A     EM  +       ++ 
Sbjct: 183 HSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEM--KSSSLDADIVL 240

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
           Y   + +  +  +VD A KF   ++     P    +++ + +L K N    AV++++ + 
Sbjct: 241 YNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLE 300

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
                 +P    YN +I    +    D  +   ++    G+ P  + YN I  CL K  +
Sbjct: 301 K--NRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGK 358

Query: 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN- 435
           V E  + F EM K +  P        I ML  A + + A E+ + + + G+ P   + N 
Sbjct: 359 VDEALRVFEEM-KKDAAPNLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVRTVNI 417

Query: 436 ----------------------------------ELLVGLRNLGRLSDVRRFAEEMLNRR 461
                                              L+ GL  +GR+ D  +  E+ML+  
Sbjct: 418 MVDRLCKSQKLDEACAIFEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKIYEKMLDSD 477

Query: 462 ILIYEVTMHKLKKAFYNESR 481
                +    L K F+N  R
Sbjct: 478 CRTNSIVYTSLIKNFFNHGR 497



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 81/385 (21%), Positives = 161/385 (41%), Gaps = 38/385 (9%)

Query: 119 MVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           ++D LGK GR +  +    +++  D   +   + S+  ++   G+ ++    +  M    
Sbjct: 453 LIDGLGKVGRVDDAYKIYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMVNQN 512

Query: 178 VEQDVVAVNSLLSAICRQ-ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA 236
              D+  +N+ +  + +  E +  RA+    + ++ V PD  S++IL+ G  K G   E 
Sbjct: 513 CSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKSRRFV-PDARSYSILIHGLIKAGFANET 571

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
            + F  M E  +       AY   +    +  +V++A + L  MK +   PT+  + + +
Sbjct: 572 YELFYSMKE--QGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVI 629

Query: 297 DILVKLNDSTHAVQLWD----------------IMVGIGF-----------------NLM 323
           D L K++    A  L++                ++ G G                   L 
Sbjct: 630 DGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLT 689

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           PN+  +N+++  L   ++++     F  M      P+ +TY ++   L K ++ ++   F
Sbjct: 690 PNVYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVF 749

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
           + EM K   +P+ ++  T I+ L  A     A  +++    NG +P  A  N ++ GL N
Sbjct: 750 WQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSN 809

Query: 444 LGRLSDVRRFAEEMLNRRILIYEVT 468
             R  D     EE   R + I+  T
Sbjct: 810 GNRAMDAFSLFEETRRRGLHIHNKT 834


>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 719

 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 80/357 (22%), Positives = 163/357 (45%), Gaps = 7/357 (1%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G  ++ Y  N+MV+ L K+G+ E++   +  ++E GV   + T+ ++  +Y   G  +EA
Sbjct: 220 GVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSSQGLMEEA 279

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAILLE 225
                 M   G    V   N++++ +C+   +  RA E F   ++  + PD  ++  LL 
Sbjct: 280 FELMHAMPSKGFSPGVYTYNTVINGLCKH-GKYERAKEVFAEMLRSGLSPDSTTYRSLLM 338

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
              K+G+  E    F +M  R +  P+ ++ + + +    R   +D+AL +   +K    
Sbjct: 339 EACKKGDAVETENIFSDMRSR-DVVPD-LVCFSSMMSLFTRSGNLDKALMYFNSVKEAGL 396

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P    ++  +    +    + A+ L + M+  G  +  +++ YN ++  LC    +   
Sbjct: 397 IPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAM--DVVTYNTILHGLCKRKMLGEA 454

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
            + F++M   G FPDS T  ++ +   K   +    + F +M +   +   +   T +  
Sbjct: 455 DKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDG 514

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
                + + A EIW  ++   ILP   S + L+  L + G LS+  R  +EM+++ I
Sbjct: 515 FGKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSI 571



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/346 (22%), Positives = 156/346 (45%), Gaps = 9/346 (2%)

Query: 119 MVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIF-DSYCGAGKYDEAVMSFDVMSMHG 177
           M+ +  ++G  ++       +KE G++      +I    YC  G   EA+   + M   G
Sbjct: 371 MMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQG 430

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
              DVV  N++L  +C+++        F    ++ + PD  +  IL++G  K GN++ A 
Sbjct: 431 CAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAM 490

Query: 238 KTFGEMVE-RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
           + F +M E R + +   V+ Y T L    +   +D A +    M  +   PT   FS  +
Sbjct: 491 ELFKKMKEKRIKLD---VVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILV 547

Query: 297 DILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG 356
           + L      + A ++WD M  I  ++ P +++ N++I   C + +  +   F ++M+  G
Sbjct: 548 NALCSKGHLSEAFRVWDEM--ISKSIKPTVMICNSMIKGYCRSGNASDGEIFLEKMISEG 605

Query: 357 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP--LNCATAITMLLDADEPEI 414
             PD ++YN +    +K + + +      +M + +    P      + +      ++ + 
Sbjct: 606 FVPDCISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGLVPDVFTYNSILHGFCRENQMKE 665

Query: 415 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           A  +   ++E G+ P  ++   L+ G  +   L++  RF +EML R
Sbjct: 666 AEAVLRKMIERGVNPDRSTYTSLINGFVSQDNLTEAFRFHDEMLQR 711



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/246 (21%), Positives = 101/246 (41%), Gaps = 2/246 (0%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T   + D +C  G    A+  F  M    ++ DVV  N+LL    +  +  +    + + 
Sbjct: 472 TLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADM 531

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           V K + P   SF+IL+     +G++ EA + + EM+ +    P  V+   + +    R  
Sbjct: 532 VSKEILPTPISFSILVNALCSKGHLSEAFRVWDEMISK-SIKPT-VMICNSMIKGYCRSG 589

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
              +   FL  M  E   P    ++  +   VK  + + A  L   M      L+P++  
Sbjct: 590 NASDGEIFLEKMISEGFVPDCISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGLVPDVFT 649

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           YN+++   C  + +        +M+  G  PD  TY  +    +    + E  +F  EM+
Sbjct: 650 YNSILHGFCRENQMKEAEAVLRKMIERGVNPDRSTYTSLINGFVSQDNLTEAFRFHDEML 709

Query: 389 KNEWQP 394
           +  + P
Sbjct: 710 QRGFSP 715



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 97/216 (44%), Gaps = 7/216 (3%)

Query: 110 RLSPYAWNLMVDVLGKNGRFE---QMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDE 165
           +L    +N ++D  GK G  +   ++W A  V KE  +L  P +F+ + ++ C  G   E
Sbjct: 502 KLDVVTYNTLLDGFGKVGDIDTAKEIW-ADMVSKE--ILPTPISFSILVNALCSKGHLSE 558

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A   +D M    ++  V+  NS++   CR  N +   +     + +   PD  S+  L+ 
Sbjct: 559 AFRVWDEMISKSIKPTVMICNSMIKGYCRSGNASDGEIFLEKMISEGFVPDCISYNTLIY 618

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+ KE N+ +A     +M E+       V  Y + L    R  Q+ EA   LR M     
Sbjct: 619 GFVKEENMSKAFGLVKKMEEKQGGLVPDVFTYNSILHGFCRENQMKEAEAVLRKMIERGV 678

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFN 321
            P    +++ ++  V  ++ T A +  D M+  GF+
Sbjct: 679 NPDRSTYTSLINGFVSQDNLTEAFRFHDEMLQRGFS 714



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 73/361 (20%), Positives = 142/361 (39%), Gaps = 27/361 (7%)

Query: 119 MVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           M+ +L ++GR     + V R+++  GV  +    S+  +Y   G  D     FD++    
Sbjct: 109 MIHILVRSGRLSDAQSCVLRMIRRSGVSRVEIVNSLVSTYSNCGSNDSV---FDLL---- 161

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
                  + + + A  R+  +   A   L      V  D  +   L+    + G VE A 
Sbjct: 162 -------IRTFVQA--RKLREAYEAFTLLRSKGYTVSIDACN--ALIGSLVRIGWVELAW 210

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297
           + + E+         +V      +  L +  ++++   FL  ++ +  +P +  ++  + 
Sbjct: 211 RIYQEISR--SGVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLIS 268

Query: 298 ILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGA 357
                     A +L   M   GF+  P +  YN VI  LC +   +     F +M+  G 
Sbjct: 269 AYSSQGLMEEAFELMHAMPSKGFS--PGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGL 326

Query: 358 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 417
            PDS TY  +     K     E E  F +M   +  P  +  ++ +++   +   + A+ 
Sbjct: 327 SPDSTTYRSLLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALM 386

Query: 418 IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR----ILIYEVTMHKLK 473
            +N + E G++P       L+ G    G +S+      EML +     ++ Y   +H L 
Sbjct: 387 YFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLC 446

Query: 474 K 474
           K
Sbjct: 447 K 447


>gi|145336957|ref|NP_176459.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206054|sp|Q9SI78.1|PPR93_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62720
 gi|6630449|gb|AAF19537.1|AC007190_5 F23N19.8 [Arabidopsis thaliana]
 gi|62320514|dbj|BAD95075.1| PPR-repeat protein [Arabidopsis thaliana]
 gi|332195876|gb|AEE33997.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 485

 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 132/275 (48%), Gaps = 6/275 (2%)

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206
           L ++  + +  C   ++  A+     M   G E DVV V+SL++  C Q N+   A++ +
Sbjct: 104 LYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFC-QGNRVFDAIDLV 162

Query: 207 NRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
           ++++++   PD   +  +++G  K G V +A + F  M ER     + V  Y + +  L 
Sbjct: 163 SKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRM-ERDGVRADAV-TYNSLVAGLC 220

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN 325
              +  +A + +R M   +  P +  F+  +D+ VK    + A++L++ M     +  P+
Sbjct: 221 CSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVD--PD 278

Query: 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 385
           +  YN++I  LC +  VD   +  D MV  G  PD +TYN +     K+KRV E  K F 
Sbjct: 279 VFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFR 338

Query: 386 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 420
           EM +       +   T I     A  P+ A EI++
Sbjct: 339 EMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFS 373



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 131/311 (42%), Gaps = 32/311 (10%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           + +I D  C  G  ++AV  FD M   GV  D V  NSL++ +C     +  A    + V
Sbjct: 177 YNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMV 236

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
            + + P+  +F  +++ + KEG   EA K + EM  R   +P+ V  Y + +  L    +
Sbjct: 237 MRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCV-DPD-VFTYNSLINGLCMHGR 294

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM-----VG--IGFNL 322
           VDEA + L +M  + C P +  ++  ++   K        +L+  M     VG  I +N 
Sbjct: 295 VDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNT 354

Query: 323 M-----------------------PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFP 359
           +                       PN+  Y+ ++  LC N  V+     F+ M       
Sbjct: 355 IIQGYFQAGRPDAAQEIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIEL 414

Query: 360 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 419
           D  TYN++   + K   V +    F  +     +P  ++  T I+      + + +  ++
Sbjct: 415 DITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLY 474

Query: 420 NYILENGILPL 430
             + E+G+LPL
Sbjct: 475 RKMQEDGLLPL 485



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 136/303 (44%), Gaps = 17/303 (5%)

Query: 98  AVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE----DGVLSLPTFAS 152
           AV+ F R    G R     +N +V  L  +GR+    +A R+M++    D V ++ TF +
Sbjct: 193 AVELFDRMERDGVRADAVTYNSLVAGLCCSGRWS---DAARLMRDMVMRDIVPNVITFTA 249

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKK 211
           + D +   GK+ EA+  ++ M+   V+ DV   NSL++ +C    +   A + L+  V K
Sbjct: 250 VIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLC-MHGRVDEAKQMLDLMVTK 308

Query: 212 IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD 271
              PD  ++  L+ G+ K   V+E  K F EM +R        + Y T +    +  + D
Sbjct: 309 GCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVG--DTITYNTIIQGYFQAGRPD 366

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA 331
            A +    M      P ++ +S  L  L        A+ L++ M      L  ++  YN 
Sbjct: 367 AAQEIFSRMDSR---PNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIEL--DITTYNI 421

Query: 332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
           VI  +C   +V++ +  F  +   G  PD ++Y  +     + ++  + +  + +M ++ 
Sbjct: 422 VIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDG 481

Query: 392 WQP 394
             P
Sbjct: 482 LLP 484



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/226 (21%), Positives = 96/226 (42%), Gaps = 2/226 (0%)

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
           +Y   +  L R  +   AL  +  M      P +   S+ ++   + N    A+ L   M
Sbjct: 106 SYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKM 165

Query: 316 VGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 375
             +GF   P++++YN +I   C    V++    FD+M   G   D++TYN +   L  + 
Sbjct: 166 EEMGFR--PDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSG 223

Query: 376 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 435
           R  +  +   +M+  +  P  +     I + +   +   A++++  +    + P   + N
Sbjct: 224 RWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYN 283

Query: 436 ELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
            L+ GL   GR+ + ++  + M+ +  L   VT + L   F    R
Sbjct: 284 SLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKR 329



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 41/210 (19%), Positives = 85/210 (40%), Gaps = 39/210 (18%)

Query: 323 MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
           +P+++ ++ V+  +  + + D V   F  M   G   D  +YN++  CL +  R      
Sbjct: 66  LPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALS 125

Query: 383 FFHEMIKNEWQPTPLNCATAITMLLDAD-----------------EPEI----------- 414
              +M+K  ++P  +  ++ I      +                  P++           
Sbjct: 126 VVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSC 185

Query: 415 -------AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEV 467
                  A+E+++ +  +G+     + N L+ GL   GR SD  R   +M+ R I+   +
Sbjct: 186 KIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVI 245

Query: 468 TMHKLKKAFYNE---SRSMRDIFDSLERRC 494
           T   +   F  E   S +M+ +++ + RRC
Sbjct: 246 TFTAVIDVFVKEGKFSEAMK-LYEEMTRRC 274


>gi|46518447|gb|AAS99705.1| At1g62720 [Arabidopsis thaliana]
          Length = 426

 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 132/275 (48%), Gaps = 6/275 (2%)

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206
           L ++  + +  C   ++  A+     M   G E DVV V+SL++  C Q N+   A++ +
Sbjct: 45  LYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFC-QGNRVFDAIDLV 103

Query: 207 NRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
           ++++++   PD   +  +++G  K G V +A + F  M ER     + V  Y + +  L 
Sbjct: 104 SKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRM-ERDGVRADAV-TYNSLVAGLC 161

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN 325
              +  +A + +R M   +  P +  F+  +D+ VK    + A++L++ M     +  P+
Sbjct: 162 CSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVD--PD 219

Query: 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 385
           +  YN++I  LC +  VD   +  D MV  G  PD +TYN +     K+KRV E  K F 
Sbjct: 220 VFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFR 279

Query: 386 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 420
           EM +       +   T I     A  P+ A EI++
Sbjct: 280 EMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFS 314



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 131/311 (42%), Gaps = 32/311 (10%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           + +I D  C  G  ++AV  FD M   GV  D V  NSL++ +C     +  A    + V
Sbjct: 118 YNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMV 177

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
            + + P+  +F  +++ + KEG   EA K + EM  R   +P+ V  Y + +  L    +
Sbjct: 178 MRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCV-DPD-VFTYNSLINGLCMHGR 235

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM-----VG--IGFNL 322
           VDEA + L +M  + C P +  ++  ++   K        +L+  M     VG  I +N 
Sbjct: 236 VDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNT 295

Query: 323 M-----------------------PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFP 359
           +                       PN+  Y+ ++  LC N  V+     F+ M       
Sbjct: 296 IIQGYFQAGRPDAAQEIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIEL 355

Query: 360 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 419
           D  TYN++   + K   V +    F  +     +P  ++  T I+      + + +  ++
Sbjct: 356 DITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLY 415

Query: 420 NYILENGILPL 430
             + E+G+LPL
Sbjct: 416 RKMQEDGLLPL 426



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 136/303 (44%), Gaps = 17/303 (5%)

Query: 98  AVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE----DGVLSLPTFAS 152
           AV+ F R    G R     +N +V  L  +GR+    +A R+M++    D V ++ TF +
Sbjct: 134 AVELFDRMERDGVRADAVTYNSLVAGLCCSGRWS---DAARLMRDMVMRDIVPNVITFTA 190

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKK 211
           + D +   GK+ EA+  ++ M+   V+ DV   NSL++ +C    +   A + L+  V K
Sbjct: 191 VIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLC-MHGRVDEAKQMLDLMVTK 249

Query: 212 IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD 271
              PD  ++  L+ G+ K   V+E  K F EM +R        + Y T +    +  + D
Sbjct: 250 GCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVG--DTITYNTIIQGYFQAGRPD 307

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA 331
            A +    M      P ++ +S  L  L        A+ L++ M      L  ++  YN 
Sbjct: 308 AAQEIFSRMDSR---PNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIEL--DITTYNI 362

Query: 332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
           VI  +C   +V++ +  F  +   G  PD ++Y  +     + ++  + +  + +M ++ 
Sbjct: 363 VIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDG 422

Query: 392 WQP 394
             P
Sbjct: 423 LLP 425



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/226 (21%), Positives = 96/226 (42%), Gaps = 2/226 (0%)

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
           +Y   +  L R  +   AL  +  M      P +   S+ ++   + N    A+ L   M
Sbjct: 47  SYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKM 106

Query: 316 VGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 375
             +GF   P++++YN +I   C    V++    FD+M   G   D++TYN +   L  + 
Sbjct: 107 EEMGFR--PDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSG 164

Query: 376 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 435
           R  +  +   +M+  +  P  +     I + +   +   A++++  +    + P   + N
Sbjct: 165 RWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYN 224

Query: 436 ELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
            L+ GL   GR+ + ++  + M+ +  L   VT + L   F    R
Sbjct: 225 SLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKR 270



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 41/210 (19%), Positives = 85/210 (40%), Gaps = 39/210 (18%)

Query: 323 MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
           +P+++ ++ V+  +  + + D V   F  M   G   D  +YN++  CL +  R      
Sbjct: 7   LPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALS 66

Query: 383 FFHEMIKNEWQPTPLNCATAITMLLDAD-----------------EPEI----------- 414
              +M+K  ++P  +  ++ I      +                  P++           
Sbjct: 67  VVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSC 126

Query: 415 -------AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEV 467
                  A+E+++ +  +G+     + N L+ GL   GR SD  R   +M+ R I+   +
Sbjct: 127 KIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVI 186

Query: 468 TMHKLKKAFYNE---SRSMRDIFDSLERRC 494
           T   +   F  E   S +M+ +++ + RRC
Sbjct: 187 TFTAVIDVFVKEGKFSEAMK-LYEEMTRRC 215


>gi|297737369|emb|CBI26570.3| unnamed protein product [Vitis vinifera]
          Length = 1042

 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 106/491 (21%), Positives = 199/491 (40%), Gaps = 24/491 (4%)

Query: 21  SSTTTSPTSHNPHRPTRPRFP-----THL--DAPYISSSARIICEILAHASSDDIESALA 73
           S +  SP+   PH      +P     TH+  D  +      +   IL   S + +   L 
Sbjct: 61  SYSRASPSVRWPHLKLTENYPPSQRPTHVVEDVDWRQRVQFLTDRILGLKSEEFVADVLD 120

Query: 74  CTGIIPTP-DLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQM 132
              +  TP D    V  +   S   A++ + W       SP A  ++  +L   G+  Q 
Sbjct: 121 DRKVQMTPTDFCFVVKWVGQSSWQRALEVYEWLNLRHWYSPNA-RMLATILSVLGKANQE 179

Query: 133 WNAVRVMKEDGVLS---LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLL 189
             AV +       S   +  + ++   Y   G++ +     D+M   G E D+V+ N+L+
Sbjct: 180 ALAVEIFARAEAASGNTVQVYNAMMGVYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLI 239

Query: 190 SAICRQENQ-TSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF 247
           +A  +     T+ A+E LN V++  + PD  ++  L+    +E N+EEA K + +MV   
Sbjct: 240 NARLKSGTMVTNLAIELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAH- 298

Query: 248 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 307
              P+ +  Y   +    R     EA +  + ++ +   P    +++ L    +  +   
Sbjct: 299 RCQPD-LWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDK 357

Query: 308 AVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMI 367
             ++ + MV +GF    + + YN +I +       D  F+ +  M   G  PD++TY ++
Sbjct: 358 VKEICEDMVKMGFG--KDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVL 415

Query: 368 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 427
            + L K   + E  +   EM+    +PT    +  I     A +   A E ++ +L +GI
Sbjct: 416 IDSLGKANMIKEAAEVMSEMLNARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGI 475

Query: 428 LPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVTMHKLKKAFYNESRSM 483
            P   + + +L  L          +  +EM+         +YEV +  L K   N    +
Sbjct: 476 KPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHALYEVMLRVLGKE--NREEDV 533

Query: 484 RDIFDSLERRC 494
             +   +E  C
Sbjct: 534 HKVVKDMEELC 544


>gi|255570715|ref|XP_002526312.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534393|gb|EEF36101.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 729

 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 87/393 (22%), Positives = 163/393 (41%), Gaps = 40/393 (10%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDE 165
           RG   S   +N++++ L K G  +Q    ++ M + G+   P T+  +   YC  G   E
Sbjct: 266 RGCYPSEVTFNVLINGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVE 325

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A+  ++ M   GV   V + N+++   C++   +    +  + +KK + PD  S+  L+ 
Sbjct: 326 ALALWEEMVTRGVSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIY 385

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+ + GN+ EA     E+  RF     +++ Y T +  L R   ++ ALK    M     
Sbjct: 386 GFCRLGNIGEAFILLDEL--RFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRGI 443

Query: 286 FPTL--------------------KFFSNALDILV---------------KLNDSTHAVQ 310
            P +                    +FF   L + +               KL D+  A +
Sbjct: 444 HPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVGELKLGDTAKAFK 503

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
           L + M+  GF   P++I YN  +  LC   +++       +M+  G  PD +TY      
Sbjct: 504 LQEEMLTKGFP--PDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHVPDHVTYTSFMHA 561

Query: 371 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 430
            ++N  + E  + F++M+     PT +     I         + A+  +  + E G++P 
Sbjct: 562 HMENGHLREGREIFYDMLSRGQTPTVVTYTVLIHAHALNGRLDWAMAYFLEMQEKGVVPN 621

Query: 431 EASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
             + N L+ G   + ++    +F  EM  + I 
Sbjct: 622 VITYNVLINGFCKVRKMDQACKFFIEMQEKGIF 654



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 87/386 (22%), Positives = 164/386 (42%), Gaps = 13/386 (3%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
           N ++ +L       +     R+M E G+  ++ T+ ++  S+C  G+   A+     M  
Sbjct: 206 NRILKILRDKNLLVKALEVYRMMGEYGIRPTVTTYNTMLHSFCKGGEVQRALDLVPKMQE 265

Query: 176 HGVEQDVVAVNSLLSAICRQ-ENQTSRAL-EFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
            G     V  N L++ + ++ E Q ++ L + + +    V P   ++  L+ G+ K+G +
Sbjct: 266 RGCYPSEVTFNVLINGLSKKGELQQAKGLIQEMAKAGLRVSPY--TYNPLICGYCKKGLL 323

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            EA   + EMV R   +P  V ++ T +    +  ++ +A + L  M  +N  P +  ++
Sbjct: 324 VEALALWEEMVTR-GVSPT-VASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYN 381

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGF-NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
             +    +L +   A  L D    + F NL  N++ YN +I  LC   D++   +  + M
Sbjct: 382 TLIYGFCRLGNIGEAFILLD---ELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDM 438

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
           +  G  PD +TY ++     K   +   ++FF EM+     P        I   L   + 
Sbjct: 439 INRGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVGELKLGDT 498

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
             A ++   +L  G  P   + N  + GL  LG L +     ++M+    +   VT    
Sbjct: 499 AKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHVPDHVTYTSF 558

Query: 473 KKAFYNES--RSMRDIFDSLERRCKT 496
             A       R  R+IF  +  R +T
Sbjct: 559 MHAHMENGHLREGREIFYDMLSRGQT 584



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 70/323 (21%), Positives = 134/323 (41%), Gaps = 10/323 (3%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N ++D L + G  E        M   G+   + T+  + +  C  G    A   FD M
Sbjct: 414 TYNTLIDGLCRLGDLETALKLKEDMINRGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEM 473

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGN 232
              G+  D  A  + +    +  + T++A +     + K   PD  ++ + + G  K GN
Sbjct: 474 LHVGLAPDQFAYTARIVGELKLGD-TAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGN 532

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +EEA +   +M+ R    P+HV  Y +F+   +    + E  +    M      PT+  +
Sbjct: 533 LEEAGELLQKMI-RDGHVPDHV-TYTSFMHAHMENGHLREGREIFYDMLSRGQTPTVVTY 590

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  +           A+  +  M   G  ++PN+I YN +I   C    +D   +FF +M
Sbjct: 591 TVLIHAHALNGRLDWAMAYFLEMQEKG--VVPNVITYNVLINGFCKVRKMDQACKFFIEM 648

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA-TAITMLLDADE 411
              G FP+  TY ++        +  E  + + +M+    +P   +C   A+   LD D 
Sbjct: 649 QEKGIFPNKYTYTILINENCNMGKWQEALRLYAQMLGKRIRPD--SCTHGALLKKLDKDY 706

Query: 412 PEIAIEIWNYILENGILPLEASA 434
              A++    ++ +G   ++A+ 
Sbjct: 707 KVQAVQFIESLILDGDRTIDANT 729



 Score = 39.7 bits (91), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 28/135 (20%), Positives = 56/135 (41%), Gaps = 1/135 (0%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F+    RGQ  +   + +++     NGR +        M+E GV+ ++ T+  + + +C 
Sbjct: 575 FYDMLSRGQTPTVVTYTVLIHAHALNGRLDWAMAYFLEMQEKGVVPNVITYNVLINGFCK 634

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
             K D+A   F  M   G+  +      L++  C           +   + K + PD  +
Sbjct: 635 VRKMDQACKFFIEMQEKGIFPNKYTYTILINENCNMGKWQEALRLYAQMLGKRIRPDSCT 694

Query: 220 FAILLEGWEKEGNVE 234
              LL+  +K+  V+
Sbjct: 695 HGALLKKLDKDYKVQ 709


>gi|357116365|ref|XP_003559952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Brachypodium distachyon]
          Length = 627

 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 92/390 (23%), Positives = 171/390 (43%), Gaps = 11/390 (2%)

Query: 96  SSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASI 153
             AV   R     G R     +  ++  L      ++    +R M E G+  ++  ++ +
Sbjct: 130 GQAVGLLRDMQASGVRPDVVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCL 189

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKI 212
              YC AG+++     F+ MS  G+E DVV    L+ ++CR E +  +A + +++ +++ 
Sbjct: 190 LQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCR-EGKVKKATQVMDKMMERG 248

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
           ++P+  ++ +L+    KEG+V+EA      M+E+        + Y T +  L    ++DE
Sbjct: 249 LEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEK--GVALDAVTYNTLITGLSGVLEMDE 306

Query: 273 ALKFLRVM-KGENCF-PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYN 330
           A+  L  M  GE    P +  F++ +  L K      A Q+ D+M   G     NL+ +N
Sbjct: 307 AMGLLEEMIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGCAC--NLVTFN 364

Query: 331 AVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 390
            +IG L     V       D+M   G  PDS TY+++     K  +V   E    +M ++
Sbjct: 365 LLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLLSKMRRD 424

Query: 391 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 450
             +P  ++    +  L +    E A   ++ + +N  L + A +  ++ G   L      
Sbjct: 425 GIEPELVHYIPLLAALCEQGMMEQARNFFDEMHKNCKLDVVAYST-MIHGACRLRDRKSA 483

Query: 451 RRFAEEMLNRRILIYEVTMHKLKKAFYNES 480
             F + ML+  ++   VT   L   F N  
Sbjct: 484 EEFLKHMLDEGLIPDSVTYSMLINMFANSG 513



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/363 (21%), Positives = 153/363 (42%), Gaps = 5/363 (1%)

Query: 97  SAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFD 155
           +A+   R      R +  ++  ++  L    R  Q    +R M+  GV   + T+ ++  
Sbjct: 97  AALFLLRVMAHETRPTAVSYTTLMRALCAERRTGQAVGLLRDMQASGVRPDVVTYGTLIR 156

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDP 215
             C A   D+AV     M   G+E +VV  + LL   C+       +  F     + ++P
Sbjct: 157 GLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRGIEP 216

Query: 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEAL 274
           D   +  L++   +EG V++A +   +M+ER  E N   V+ Y   + ++ +   V EA+
Sbjct: 217 DVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPN---VVTYNVLINSMCKEGSVKEAM 273

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
                M  +        ++  +  L  + +   A+ L + M+     + PN++ +N+VI 
Sbjct: 274 SLRNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIH 333

Query: 335 LLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
            LC    +   F+  D M  +G   + +T+N++   L++  +V +  +   EM  +  +P
Sbjct: 334 GLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEP 393

Query: 395 TPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 454
                +  I       + + A  + + +  +GI P       LL  L   G +   R F 
Sbjct: 394 DSFTYSILINGFCKMWQVDRAESLLSKMRRDGIEPELVHYIPLLAALCEQGMMEQARNFF 453

Query: 455 EEM 457
           +EM
Sbjct: 454 DEM 456



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 117/266 (43%), Gaps = 11/266 (4%)

Query: 127 GRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN 186
           G  E+M +    M E  V+   TF S+    C  G+  +A    D+M+ +G   ++V  N
Sbjct: 309 GLLEEMIHG-ETMVEPNVV---TFNSVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFN 364

Query: 187 SLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245
            L+  + R  ++  +A+E ++ +    ++PD  +++IL+ G+ K   V+ A     +M  
Sbjct: 365 LLIGGLLRV-HKVKKAMELMDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLLSKM-R 422

Query: 246 RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS 305
           R    PE V  Y   L  L     +++A  F   M  +NC   +  +S  +    +L D 
Sbjct: 423 RDGIEPELV-HYIPLLAALCEQGMMEQARNFFDEMH-KNCKLDVVAYSTMIHGACRLRDR 480

Query: 306 THAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYN 365
             A +    M+  G  L+P+ + Y+ +I +  N+ D+    R   QM   G  PD   ++
Sbjct: 481 KSAEEFLKHMLDEG--LIPDSVTYSMLINMFANSGDLGAAERVLKQMTASGFVPDVAVFD 538

Query: 366 MIFECLIKNKRVHEVEKFFHEMIKNE 391
            + +         +V +   EM   +
Sbjct: 539 SLIKGYGAKGDTEKVLELIREMTAKD 564



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 93/219 (42%), Gaps = 4/219 (1%)

Query: 255 LAYETFLITLIR-GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
           ++Y T L  L R G  +D AL  LRVM  E   PT   ++  +  L     +  AV L  
Sbjct: 79  VSYNTVLAALCRQGGCLDAALFLLRVMAHET-RPTAVSYTTLMRALCAERRTGQAVGLLR 137

Query: 314 IMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 373
            M   G    P+++ Y  +I  LC+  DVD       +M   G  P+ + Y+ + +   K
Sbjct: 138 DMQASGVR--PDVVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQGYCK 195

Query: 374 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 433
             R   V K F EM     +P  +     I  L    + + A ++ + ++E G+ P   +
Sbjct: 196 AGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNVVT 255

Query: 434 ANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
            N L+  +   G + +       ML + + +  VT + L
Sbjct: 256 YNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTL 294



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 67/339 (19%), Positives = 126/339 (37%), Gaps = 70/339 (20%)

Query: 125 KNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV 183
           K GR+E +      M   G+   +  +  + DS C  GK  +A    D M   G+E +VV
Sbjct: 195 KAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNVV 254

Query: 184 AVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
             N L++++C+ E     A+   N  ++K V  D  ++  L+ G      ++EA     E
Sbjct: 255 TYNVLINSMCK-EGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMGLLEE 313

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
           M+        +V+ + + +  L +  ++ +A +   +M    C   L  F+  +  L+++
Sbjct: 314 MIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLRV 373

Query: 303 NDSTHAVQLWDIMVGIGF---------------------------------NLMPNLIMY 329
           +    A++L D M   G                                   + P L+ Y
Sbjct: 374 HKVKKAMELMDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLLSKMRRDGIEPELVHY 433

Query: 330 NAVIGLLCNNDDVDNVFRFFDQM-------------VFHGA------------------- 357
             ++  LC    ++    FFD+M             + HGA                   
Sbjct: 434 IPLLAALCEQGMMEQARNFFDEMHKNCKLDVVAYSTMIHGACRLRDRKSAEEFLKHMLDE 493

Query: 358 --FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
              PDS+TY+M+      +  +   E+   +M  + + P
Sbjct: 494 GLIPDSVTYSMLINMFANSGDLGAAERVLKQMTASGFVP 532


>gi|414587035|tpg|DAA37606.1| TPA: hypothetical protein ZEAMMB73_100135 [Zea mays]
          Length = 547

 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 80/373 (21%), Positives = 155/373 (41%), Gaps = 47/373 (12%)

Query: 107 RGQRLS----PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS--LPTFASIFDSYCGA 160
           +G RL     PYA+N +++ L  +GR +          +DG+ S  + +F  +    C  
Sbjct: 169 KGSRLGCCIEPYAYNYLLNSLIAHGRAQDAVALFESWIQDGLYSPDVWSFNVVIKGVCRM 228

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK--IVDPDGD 218
           G + +A+   + M+  G   D +  N L+  +CR + Q ++  E L R+++  +  P+  
Sbjct: 229 GNFQKALELVERMTEFGCSPDTITHNILVDGLCRAK-QVNKGHEVLRRLQRDGVCMPNAV 287

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVER-------------------------------- 246
           ++  ++ G+ K G +E+A   + +M+E                                 
Sbjct: 288 TYTSVISGYCKAGKMEDAMSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQL 347

Query: 247 -FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS 305
                P  V+ + + +    R  Q+D+A +  + M   +  P +  FS  +  L K N S
Sbjct: 348 ILRHCPPDVVTFSSLIDGYCRCGQLDDAKRIWKEMGLHHIQPNVYTFSIIIHSLCKQNRS 407

Query: 306 THAVQLWDIM--VGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLT 363
             A+   DI+  + +  ++ P   +YN VI +LC    VD        M   G  PD  T
Sbjct: 408 AEAL---DILRELNMRTDIAPQTFIYNPVIDILCKGGKVDEANLIVTDMKEKGCHPDKYT 464

Query: 364 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 423
           Y ++        R+ E    FH+M++   +P  +   + ++ +L A  P    +I     
Sbjct: 465 YTILIIGHCMKGRIPEAITLFHKMVEAGCRPDNITVNSFVSCVLKAGMPNEVDQIMLIAS 524

Query: 424 ENGILPLEASANE 436
            +G+   + S+ +
Sbjct: 525 GHGLASQKVSSQQ 537



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 65/322 (20%), Positives = 129/322 (40%), Gaps = 46/322 (14%)

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI-TLIRGKQVD 271
           V P   S+  ++    + G   +A K F +M+++  + PE    + +F+  +      +D
Sbjct: 104 VPPSEQSYIHVIAFLCRSGRHRDALKLFDQMMDQSGYLPE--AGFFSFVAGSCTNAGLLD 161

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA 331
            A   L       C      ++  L+ L+    +  AV L++  +  G    P++  +N 
Sbjct: 162 AASTLLTKGSRLGCCIEPYAYNYLLNSLIAHGRAQDAVALFESWIQDGL-YSPDVWSFNV 220

Query: 332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
           VI  +C   +        ++M   G  PD++T+N++ + L + K+V++  +    + ++ 
Sbjct: 221 VIKGVCRMGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNKGHEVLRRLQRDG 280

Query: 392 -WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG---------- 440
              P  +   + I+    A + E A+ ++N +LE+G  P   + N L+ G          
Sbjct: 281 VCMPNAVTYTSVISGYCKAGKMEDAMSVYNDMLESGTRPNTVTYNVLINGYGKALDMESA 340

Query: 441 --------LRNL-----------------GRLSDVRRFAEEM----LNRRILIYEVTMHK 471
                   LR+                  G+L D +R  +EM    +   +  + + +H 
Sbjct: 341 VRMYRQLILRHCPPDVVTFSSLIDGYCRCGQLDDAKRIWKEMGLHHIQPNVYTFSIIIHS 400

Query: 472 LKKAFYNESRSMRDIFDSLERR 493
           L K   N S    DI   L  R
Sbjct: 401 LCKQ--NRSAEALDILRELNMR 420


>gi|297800016|ref|XP_002867892.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
 gi|297313728|gb|EFH44151.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
          Length = 658

 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 164/366 (44%), Gaps = 13/366 (3%)

Query: 123 LGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM-SMHGVEQD 181
           LG     E++ + +R+  E+ V+   +F  +F +Y  A   ++AV  F  M      ++ 
Sbjct: 90  LGDFASVEKLLSRIRL--ENRVIIERSFIVVFRAYGKAHLPEKAVDLFHRMVDEFRCKRS 147

Query: 182 VVAVNSLLSAICRQENQTSRALEFLNRVKKI-----VDPDGDSFAILLEGWEKEGNVEEA 236
           V + NS+L+ I   E    R LEF + V        + P+G SF ++++   K G V+ A
Sbjct: 148 VKSFNSVLNVII-NEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLGFVDRA 206

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
            + F  M E+ +  P+    Y T +  L + +++DEA+  L  M+ E C P+   ++  +
Sbjct: 207 IEVFRGMPEK-KCLPDGY-TYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLI 264

Query: 297 DILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG 356
           D L K  D +   +L D M   G    PN + YN +I  LC    +D      ++MV   
Sbjct: 265 DGLCKKGDLSRVTKLVDNMFLKG--CFPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSK 322

Query: 357 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 416
             P+ +TY  +   L+K +R  +  +    M +  ++      +  I+ L    + E A+
Sbjct: 323 CIPNDVTYGTLINGLVKQRRAMDGARLLISMEERGYRLNQHIYSVLISGLFKEGKAEEAM 382

Query: 417 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
            +W  + E G  P     + ++ GL   G+ ++ +     M++   L    T   L K F
Sbjct: 383 TLWKKMAEKGCRPNIVVYSAVIDGLCREGKPNEAKEILNGMISSGCLPNVYTYSSLMKGF 442

Query: 477 YNESRS 482
           +    S
Sbjct: 443 FKTGLS 448



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 85/359 (23%), Positives = 154/359 (42%), Gaps = 11/359 (3%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G   SP  +N+++D L K G   ++   V  M   G   +  T+ ++    C  GK D+A
Sbjct: 252 GCSPSPVIYNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNTLIHGLCLKGKLDKA 311

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
           V   + M       + V   +L++ + +Q      A   ++  ++    +   +++L+ G
Sbjct: 312 VSLLERMVSSKCIPNDVTYGTLINGLVKQRRAMDGARLLISMEERGYRLNQHIYSVLISG 371

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
             KEG  EEA   + +M E+    P +++ Y   +  L R  + +EA + L  M    C 
Sbjct: 372 LFKEGKAEEAMTLWKKMAEK-GCRP-NIVVYSAVIDGLCREGKPNEAKEILNGMISSGCL 429

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346
           P +  +S+ +    K   S  A+Q+W  M   G +   N   Y+ +I  LC    V    
Sbjct: 430 PNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCS--RNEFCYSVLIDGLCGVGRVKEAM 487

Query: 347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406
             + +M+  G  PD++ Y+ + + L     +    K +HEM+  E +P          +L
Sbjct: 488 MVWSKMLTIGIKPDTVAYSSMIKGLCGIGSMDAALKLYHEMLCQE-EPKSQPDVVTYNIL 546

Query: 407 LDA----DEPEIAIEIWNYILENGILPLEASANELLVGLRNLG-RLSDVRRFAEEMLNR 460
           LD      +   A+++ N +L+ G  P   + N  L  L        + R F EE++ R
Sbjct: 547 LDGLCMQKDVSRAVDLLNCMLDRGCDPDVITCNTFLNTLSEKSDSCEEGRSFLEELVAR 605



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 141/354 (39%), Gaps = 56/354 (15%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVM 173
           ++NL++  L K G  ++     R M E   L    T+ ++ D  C   + DEAV+  D M
Sbjct: 189 SFNLVIKALCKLGFVDRAIEVFRGMPEKKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEM 248

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD--------PDGDSFAILLE 225
              G     V  N L+  +C++ +        L+RV K+VD        P+  ++  L+ 
Sbjct: 249 QSEGCSPSPVIYNVLIDGLCKKGD--------LSRVTKLVDNMFLKGCFPNEVTYNTLIH 300

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G   +G +++A      MV   +  P  V  Y T +  L++ ++  +  + L  M+    
Sbjct: 301 GLCLKGKLDKAVSLLERMVSS-KCIPNDV-TYGTLINGLVKQRRAMDGARLLISMEERGY 358

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
                 +S  +  L K   +  A+ LW  M   G    PN+++Y+AVI  LC     +  
Sbjct: 359 RLNQHIYSVLISGLFKEGKAEEAMTLWKKMAEKGCR--PNIVVYSAVIDGLCREGKPNEA 416

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
               + M+  G  P+  TY+ +            ++ FF   +  E              
Sbjct: 417 KEILNGMISSGCLPNVYTYSSL------------MKGFFKTGLSEE-------------- 450

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
                    AI++W  + E G    E   + L+ GL  +GR+ +      +ML 
Sbjct: 451 ---------AIQVWREMDETGCSRNEFCYSVLIDGLCGVGRVKEAMMVWSKMLT 495



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 89/210 (42%), Gaps = 2/210 (0%)

Query: 276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG--IGFNLMPNLIMYNAVI 333
           F R++    C  ++K F++ L++++        ++ +D +V   +  N+ PN + +N VI
Sbjct: 135 FHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVI 194

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
             LC    VD     F  M      PD  TY  + + L K +R+ E      EM      
Sbjct: 195 KALCKLGFVDRAIEVFRGMPEKKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCS 254

Query: 394 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 453
           P+P+     I  L    +     ++ + +   G  P E + N L+ GL   G+L      
Sbjct: 255 PSPVIYNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNTLIHGLCLKGKLDKAVSL 314

Query: 454 AEEMLNRRILIYEVTMHKLKKAFYNESRSM 483
            E M++ + +  +VT   L      + R+M
Sbjct: 315 LERMVSSKCIPNDVTYGTLINGLVKQRRAM 344



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 92/209 (44%), Gaps = 22/209 (10%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDV 172
           Y ++ ++    K G  E+     R M E G       ++ + D  CG G+  EA+M +  
Sbjct: 433 YTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNEFCYSVLIDGLCGVGRVKEAMMVWSK 492

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRAL----EFLNRVKKIVDPDGDSFAILLEGWE 228
           M   G++ D VA +S++  +C   +  + AL    E L + +    PD  ++ ILL+G  
Sbjct: 493 MLTIGIKPDTVAYSSMIKGLCGIGSMDA-ALKLYHEMLCQEEPKSQPDVVTYNILLDGLC 551

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
            + +V  A      M++R   +P+ V+   TFL TL                K ++C   
Sbjct: 552 MQKDVSRAVDLLNCMLDR-GCDPD-VITCNTFLNTLSE--------------KSDSCEEG 595

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVG 317
             F    +  L+K    + A ++ ++M+G
Sbjct: 596 RSFLEELVARLLKRQRVSGACKIVEVMLG 624


>gi|302143622|emb|CBI22375.3| unnamed protein product [Vitis vinifera]
          Length = 407

 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 137/291 (47%), Gaps = 9/291 (3%)

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN--QTSRALEFLNRVK 210
           + +  C AGK++E++   + +   G   DV+    L+      +N  + SR +E L   +
Sbjct: 74  LLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEIL---E 130

Query: 211 KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270
              +PD  ++  ++ G+ K   +E A +    M  R  + P+ ++ Y   + +L   +++
Sbjct: 131 SHTEPDVFAYNAVISGFCKVNRIEAATQVLNRMKAR-GFLPD-IVTYNIMIGSLCNRRKL 188

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYN 330
             ALK L  +  +NC PT+  ++  ++  +       A++L + M+  G  L+P++  YN
Sbjct: 189 GLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARG--LLPDMYTYN 246

Query: 331 AVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 390
           A+I  +C     D   +   +M   G  P+ +TY+++   L +  R+ E       MI+ 
Sbjct: 247 AIIRGMCKEGMWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEK 306

Query: 391 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 441
           E  P   +    I+ L      ++AI I +Y++ NG LP   + N +L  L
Sbjct: 307 ELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAAL 357



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 116/265 (43%), Gaps = 13/265 (4%)

Query: 129 FEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAV 185
           F+ +  A RVM+     + P    + ++   +C   + + A    + M   G   D+V  
Sbjct: 116 FKNIEKASRVMEILESHTEPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTY 175

Query: 186 NSLLSAICRQENQTSRALEFLNRVKKIVD---PDGDSFAILLEGWEKEGNVEEANKTFGE 242
           N ++ ++C +  +   AL+ L+++  ++D   P   ++ IL+E    EG + EA K   E
Sbjct: 176 NIMIGSLCNRR-KLGLALKVLDQL--LLDNCMPTVITYTILIEATIVEGGINEAMKLLEE 232

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
           M+ R    P+ +  Y   +  + +    DE  K +  M    C P    +S  +  L + 
Sbjct: 233 MLAR-GLLPD-MYTYNAIIRGMCKEGMWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRF 290

Query: 303 NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSL 362
                A+ +  +M  I   L P+   Y+ +I  LC    +D      D M+ +G  PD +
Sbjct: 291 GRIDEAISVLKVM--IEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIV 348

Query: 363 TYNMIFECLIKNKRVHEVEKFFHEM 387
            YN I   L KN   ++  + F+++
Sbjct: 349 NYNTILAALCKNGNANQALEIFNKL 373



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 107/249 (42%), Gaps = 7/249 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           +A+N ++    K  R E     +  MK  G L  + T+  +  S C   K   A+   D 
Sbjct: 138 FAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQ 197

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEG 231
           + +      V+    L+ A    E   + A++ L   + + + PD  ++  ++ G  KEG
Sbjct: 198 LLLDNCMPTVITYTILIEATI-VEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEG 256

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
             +E  K   EM  R    P  V  Y   + +L R  ++DEA+  L+VM  +   P    
Sbjct: 257 MWDEGEKLVAEMFSR-GCEPNKV-TYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYS 314

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           +   +  L K      A+ + D M+  G   +P+++ YN ++  LC N + +     F++
Sbjct: 315 YDPLISALCKEGRLDLAIGIMDYMISNG--CLPDIVNYNTILAALCKNGNANQALEIFNK 372

Query: 352 MVFHGAFPD 360
           +   G  P+
Sbjct: 373 LRGMGCPPN 381



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/220 (20%), Positives = 96/220 (43%), Gaps = 10/220 (4%)

Query: 248 EWNPEHVLAY---ETFLITLI----RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV 300
           E  P H+ +Y   ET L+ L+    +  + +E+L FL  +  +   P +   +  +    
Sbjct: 55  EARPAHLQSYDFRETHLMKLLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFF 114

Query: 301 KLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPD 360
              +   A ++ +I+     +  P++  YNAVI   C  + ++   +  ++M   G  PD
Sbjct: 115 NFKNIEKASRVMEILES---HTEPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPD 171

Query: 361 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 420
            +TYN++   L   +++    K   +++ +   PT +     I   +       A+++  
Sbjct: 172 IVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLE 231

Query: 421 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
            +L  G+LP   + N ++ G+   G   +  +   EM +R
Sbjct: 232 EMLARGLLPDMYTYNAIIRGMCKEGMWDEGEKLVAEMFSR 271



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 60/114 (52%), Gaps = 2/114 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG   +   +++++  L + GR ++  + ++VM E  +     ++  +  + C  G+ D 
Sbjct: 271 RGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDL 330

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
           A+   D M  +G   D+V  N++L+A+C+  N  ++ALE  N+++ +  P  D 
Sbjct: 331 AIGIMDYMISNGCLPDIVNYNTILAALCKNGN-ANQALEIFNKLRGMGCPPNDG 383


>gi|357494039|ref|XP_003617308.1| Auxin response factor [Medicago truncatula]
 gi|355518643|gb|AET00267.1| Auxin response factor [Medicago truncatula]
          Length = 948

 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 143/302 (47%), Gaps = 7/302 (2%)

Query: 150 FASIFDSYCGAGKYDEAV-MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           + ++ + Y  +G+++EA  + +  M + G E D    N ++  +C++    S ALEFL+ 
Sbjct: 339 YNTLINGYVVSGRFEEAKDLLYKNMVIAGFEPDAFTFNIMIDGLCKKGYLVS-ALEFLDE 397

Query: 209 -VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            VKK  +P+  ++ IL++G+ K+G+ EEA+K    M  +      + + Y   +  L + 
Sbjct: 398 MVKKGFEPNVITYTILIDGFCKQGHFEEASKVVNSMSAK--GLSLNTVGYNCLIGALCKD 455

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
            ++ +AL+    M  + C P +  F++ +  L K +    A+ L+  M+  G  ++ N +
Sbjct: 456 GKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEG--VIANTV 513

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            YN +I      + +    +   +M F G   D++TYN + + L K     +      +M
Sbjct: 514 TYNTLIHAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGATEKCLGLIEQM 573

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
              E  P+  +C   I       +   A++    +++ G+ P   + N L+ GL  +GR 
Sbjct: 574 FGEEIFPSINSCNILINSFCRTGKVNDALQFLRDMIQRGLTPDIVTYNSLINGLCKMGRF 633

Query: 448 SD 449
            +
Sbjct: 634 QE 635



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 137/322 (42%), Gaps = 7/322 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +N+M+D L K G        +  M + G   ++ T+  + D +C  G ++EA    + 
Sbjct: 373 FTFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEASKVVNS 432

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEG 231
           MS  G+  + V  N L+ A+C+ + +   AL+    +  K   PD  +F  L+ G  K  
Sbjct: 433 MSAKGLSLNTVGYNCLIGALCK-DGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKND 491

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            +EEA   + +M+   E    + + Y T +   +R + + +A K +  M+   C      
Sbjct: 492 KMEEALGLYRDML--LEGVIANTVTYNTLIHAFLRLELIQQADKLVGEMRFRGCPLDNIT 549

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           ++  +  L K   +   + L + M   G  + P++   N +I   C    V++  +F   
Sbjct: 550 YNGLIKALCKTGATEKCLGLIEQM--FGEEIFPSINSCNILINSFCRTGKVNDALQFLRD 607

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M+  G  PD +TYN +   L K  R  E    F+ +      P  +   T I+       
Sbjct: 608 MIQRGLTPDIVTYNSLINGLCKMGRFQEALNLFNGLQAKGIHPDAVTYNTLISRYCYEGL 667

Query: 412 PEIAIEIWNYILENGILPLEAS 433
              A ++    + NG +P E +
Sbjct: 668 FNDACQLLFKGVSNGFIPNEIT 689



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 84/420 (20%), Positives = 169/420 (40%), Gaps = 53/420 (12%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS----LPTFASIFDSYCGAGKYDEAVMSFD 171
           + +++  L +N R  +   A+++++E  ++     + TF  +    C AG+  EA    D
Sbjct: 238 YQMLIHALSENNRVNE---AMKLLEEMFLMGCEPDVQTFNDVIHGLCKAGRIHEAAKLHD 294

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQEN--------------------------------QT 199
            M +     D +    L+  +CR                                   + 
Sbjct: 295 RMLLRDFTADALIQGYLMHGLCRMGKVDEARAMLSKIPNPNTVLYNTLINGYVVSGRFEE 354

Query: 200 SRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYE 258
           ++ L + N V    +PD  +F I+++G  K+G +  A +   EMV++ FE N   V+ Y 
Sbjct: 355 AKDLLYKNMVIAGFEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPN---VITYT 411

Query: 259 TFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI 318
             +    +    +EA K +  M  +        ++  +  L K      A+Q++  M   
Sbjct: 412 ILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDALQMYGEMSSK 471

Query: 319 GFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVH 378
           G    P++  +N++I  LC ND ++     +  M+  G   +++TYN +    ++ + + 
Sbjct: 472 GCK--PDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYNTLIHAFLRLELIQ 529

Query: 379 EVEKFFHEMIKNEWQPTPLNCAT---AITMLLDADEPEIAIEIWNYILENGILPLEASAN 435
           + +K   EM    ++  PL+  T    I  L      E  + +   +    I P   S N
Sbjct: 530 QADKLVGEM---RFRGCPLDNITYNGLIKALCKTGATEKCLGLIEQMFGEEIFPSINSCN 586

Query: 436 ELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMR--DIFDSLERR 493
            L+      G+++D  +F  +M+ R +    VT + L        R     ++F+ L+ +
Sbjct: 587 ILINSFCRTGKVNDALQFLRDMIQRGLTPDIVTYNSLINGLCKMGRFQEALNLFNGLQAK 646



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 95/419 (22%), Positives = 171/419 (40%), Gaps = 45/419 (10%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAG--RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVR 137
           TP  + ++L+L  D P+S +D F  AG  RG   S + + L++D LG  G F+ +   ++
Sbjct: 60  TPSQLCKLLELPLDVPTS-MDLFEKAGLQRGYIHSFHVYYLLIDKLGNVGEFKMIDKLLK 118

Query: 138 VMKEDG-VLSLPTFASIFDSYCGAGKYDEAV-MSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
            MK++G V     F  I   Y  AG   +A  +  D+  ++  E    + N +L  +   
Sbjct: 119 QMKDEGCVFKESLFILIMRYYGKAGLPGQATRLLLDMWGVYCFEPTFKSYNVVLEILVAG 178

Query: 196 ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
                    F + + + + P   +F ++++ +     V+ A     +M +     P  ++
Sbjct: 179 NCPKVAPNVFYDMLSRGISPTVYTFGVVMKAFCMVNEVDSACSLLRDMTKH-GCVPNSII 237

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
            Y+  +  L    +V+EA+K L  M    C P ++ F++ +  L K      A +L D M
Sbjct: 238 -YQMLIHALSENNRVNEAMKLLEEMFLMGCEPDVQTFNDVIHGLCKAGRIHEAAKLHDRM 296

Query: 316 VGIGFN--------LM---------------------PNLIMYNAVIGLLCNNDDVDNVF 346
           +   F         LM                     PN ++YN +I    N   V   F
Sbjct: 297 LLRDFTADALIQGYLMHGLCRMGKVDEARAMLSKIPNPNTVLYNTLI----NGYVVSGRF 352

Query: 347 R-----FFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
                  +  MV  G  PD+ T+N++ + L K   +    +F  EM+K  ++P  +    
Sbjct: 353 EEAKDLLYKNMVIAGFEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTI 412

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
            I         E A ++ N +   G+       N L+  L   G++ D  +   EM ++
Sbjct: 413 LIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDALQMYGEMSSK 471



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 111/259 (42%), Gaps = 14/259 (5%)

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERF--EWNPEHVLAYETFLITLIR--GKQV--DE 272
           SF +     +K GNV E      +M+++   +   E  +  E+  I ++R  GK     +
Sbjct: 93  SFHVYYLLIDKLGNVGEF-----KMIDKLLKQMKDEGCVFKESLFILIMRYYGKAGLPGQ 147

Query: 273 ALKFLRVMKGENCF-PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA 331
           A + L  M G  CF PT K ++  L+ILV  N    A  ++  M+  G +  P +  +  
Sbjct: 148 ATRLLLDMWGVYCFEPTFKSYNVVLEILVAGNCPKVAPNVFYDMLSRGIS--PTVYTFGV 205

Query: 332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
           V+   C  ++VD+       M  HG  P+S+ Y M+   L +N RV+E  K   EM    
Sbjct: 206 VMKAFCMVNEVDSACSLLRDMTKHGCVPNSIIYQMLIHALSENNRVNEAMKLLEEMFLMG 265

Query: 392 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 451
            +P        I  L  A     A ++ + +L             L+ GL  +G++ + R
Sbjct: 266 CEPDVQTFNDVIHGLCKAGRIHEAAKLHDRMLLRDFTADALIQGYLMHGLCRMGKVDEAR 325

Query: 452 RFAEEMLNRRILIYEVTMH 470
               ++ N   ++Y   ++
Sbjct: 326 AMLSKIPNPNTVLYNTLIN 344


>gi|449499490|ref|XP_004160831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 77/359 (21%), Positives = 152/359 (42%), Gaps = 23/359 (6%)

Query: 116 WNLMVDVLGKNGR------FEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVM 168
           +N+++  +   G       FE    A   M   G VL+     S     CG GK+++A  
Sbjct: 416 YNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYK 475

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
               M  +G   D    + ++  +C      +    F       V PD  ++ IL++ + 
Sbjct: 476 VIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFS 535

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           K G +++A+    EMV R    P  V+ Y T +   ++ K+V  A +   +M  + CFP 
Sbjct: 536 KAGIIKQAHNWLDEMV-RDGCEPT-VVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPN 593

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVG------------IGFNLM--PNLIMYNAVIG 334
           +  ++  +D   K  +   A Q++  M G            I  N+   PN++ Y A++ 
Sbjct: 594 VITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVD 653

Query: 335 LLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
            LC    V +     + M   G  P+++ Y+ + +   K  ++ E ++ FH+M++  + P
Sbjct: 654 GLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVERGYNP 713

Query: 395 TPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 453
                ++ I  L      ++ +++ + +LEN   P      E++ GL  + +  +  + 
Sbjct: 714 NVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKL 772



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 97/453 (21%), Positives = 170/453 (37%), Gaps = 66/453 (14%)

Query: 1   MEVMDESPDFVIKNKIIPSSSSTTTSPTSHNPHRPTRP-----RFPTHLDAPYISSSARI 55
           ME  +  P +V+ N +I S  S    P         +         T L+   + S AR 
Sbjct: 404 MEKCECKPGYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARC 463

Query: 56  ICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA---GRGQRLS 112
           +C       +  +   +   G +P      EV+    ++      FF +    G G    
Sbjct: 464 LCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPD 523

Query: 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFD 171
            Y + +++D   K G  +Q  N +  M  DG   ++ T+ ++  +Y  A K   A   F+
Sbjct: 524 VYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFE 583

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD-PDGD------------ 218
           +M   G   +V+   +L+   C+  N   +A +   R++   D PD D            
Sbjct: 584 LMIAKGCFPNVITYTALIDGYCKSGN-IEKACQIYARMRGDADIPDVDMYFKIKNNVAEK 642

Query: 219 ---------------------------------------SFAILLEGWEKEGNVEEANKT 239
                                                   +  L++G+ K   ++EA + 
Sbjct: 643 PNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEV 702

Query: 240 FGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299
           F +MVER  +NP +V  Y + +  L + K++D  LK L  M   +C P +  ++  +D L
Sbjct: 703 FHKMVER-GYNP-NVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGL 760

Query: 300 VKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFP 359
            K+  +  A +L  +M   G    PN++ Y A+I        VD     F +M   G  P
Sbjct: 761 SKVAKTDEAYKLMLMMEEKGCK--PNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAP 818

Query: 360 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 392
           + +TY ++         + E      EM +  W
Sbjct: 819 NFVTYTVLINHCCATGHLDEAYALLEEMKQTYW 851



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/347 (22%), Positives = 142/347 (40%), Gaps = 14/347 (4%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAV 167
           G  +  +        L K G++ +  + +   KED V +   +  +    C A  ++EA+
Sbjct: 271 GLSMDEFTLGFFAQALCKVGKWREALSLIE--KEDFVPNTILYNKMISGLCEASFFEEAM 328

Query: 168 MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEG 226
              + M       +V     LL   C  + Q  R    L+  + +   P    F  L+  
Sbjct: 329 DFLNRMRSTSCIPNVQTYRILLCG-CLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHA 387

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
           + K  +   A K   +M E+ E  P +V+ Y   + ++  G ++   + F    K  N  
Sbjct: 388 YCKSDDFSYAYKLLKKM-EKCECKPGYVV-YNILIGSICSGGELPGPVTFELAEKAYNEM 445

Query: 287 PTLKFFSNALDI------LVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
            +     N +++      L        A ++   M+G GF  +P+   Y+ VIG LCN  
Sbjct: 446 LSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGF--VPDTSTYSEVIGFLCNAS 503

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
            V+N F  F +M   G  PD  TY ++ +C  K   + +   +  EM+++  +PT +   
Sbjct: 504 RVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYT 563

Query: 401 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
           T I   L A +  +A E++  ++  G  P   +   L+ G    G +
Sbjct: 564 TLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNI 610



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 93/446 (20%), Positives = 171/446 (38%), Gaps = 62/446 (13%)

Query: 81  PDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQ------- 131
           PDLV E+L     SP   V FF WAGR  G   +P  +  ++DV  + G +++       
Sbjct: 138 PDLVVEILSF-LKSPELCVKFFLWAGRQIGYDHTPAVYIALLDVF-ERGSYDRVPEEFLR 195

Query: 132 -------------------------MWNAVRVMKEDGVL-------SLPTFASIFDSYCG 159
                                    +WN    ++E G L       +  T+ ++   +  
Sbjct: 196 EIRGDDKEVLGKLLNVLIRKCCRNGLWNV--ALEELGRLKDFGYKPTRMTYNALVQVFLR 253

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
           A K D A +    MS  G+  D   +     A+C+   +   AL  + +   +  P+   
Sbjct: 254 ADKLDTAQLVHREMSELGLSMDEFTLGFFAQALCKV-GKWREALSLIEKEDFV--PNTIL 310

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           +  ++ G  +    EEA      M  R      +V  Y   L   +  KQ+    + L +
Sbjct: 311 YNKMISGLCEASFFEEAMDFLNRM--RSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSM 368

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
           M  E C+P+   F++ +    K +D ++A +L   M        P  ++YN +IG +C+ 
Sbjct: 369 MIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKC--ECKPGYVVYNILIGSICSG 426

Query: 340 DDVDNVFRF------FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
            ++     F      +++M+  G   + +       CL    +  +  K  HEM+ N + 
Sbjct: 427 GELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFV 486

Query: 394 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 453
           P     +  I  L +A   E A  ++  +   G++P   +   L+      G +     +
Sbjct: 487 PDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNW 546

Query: 454 AEEMLNR----RILIYEVTMHKLKKA 475
            +EM+       ++ Y   +H   KA
Sbjct: 547 LDEMVRDGCEPTVVTYTTLIHAYLKA 572


>gi|356558657|ref|XP_003547620.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g55840-like [Glycine max]
          Length = 1078

 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 82/380 (21%), Positives = 168/380 (44%), Gaps = 9/380 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N++++ L + G+F+     +R M+E GV  +  T+ ++ + YC  G+Y  A    D M
Sbjct: 177 TFNILLNALCERGKFKNAGFLLRKMEESGVYPTAVTYNTLLNWYCKKGRYKAASQLIDCM 236

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGN 232
           +  G+  DV   N  +  +CR ++++++    L R+++ +V P+  ++  L+ G+ +EG 
Sbjct: 237 ASKGIGVDVCTYNVFIDNLCR-DSRSAKGYLLLKRMRRNMVYPNEITYNTLISGFVREGK 295

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +E A K F EM   F   P  +  Y T +        + EAL+ + VM      P    +
Sbjct: 296 IEVATKVFDEM-SLFNLLPNSI-TYNTLIAGHCTTGNIGEALRLMDVMVSHGLRPNEVTY 353

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
              L+ L K  +      + + M   G  +  + I Y A+I  LC N  ++   +  D M
Sbjct: 354 GALLNGLYKNAEFGMVSSILERMRMGGVRV--SHISYTAMIDGLCKNGMLEEAVQLLDDM 411

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
           +     PD +T++++     +  +++  ++   +M K    P  +  +T I         
Sbjct: 412 LKVSVNPDVVTFSVLINGFFRVGKINNAKEIMCKMYKTGLVPNGILYSTLIYNYCKMGYL 471

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
           + A+  +  +  +G +    + N L+      G+L +   F   M    +    VT   +
Sbjct: 472 KEALNAYAVMNHSGHVADHFTCNVLVATFCRYGKLEEAEYFMNHMSRMGLDPNSVTFDCI 531

Query: 473 KKAFYNESRSMR--DIFDSL 490
              + N   +++   +FD +
Sbjct: 532 INGYGNSGDALKAFSVFDKM 551



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 83/378 (21%), Positives = 147/378 (38%), Gaps = 58/378 (15%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSL----PTFASIFDSYCGAGKYDEAVMSF 170
            +N ++    + G+ E    A +V  E  + +L     T+ ++   +C  G   EA+   
Sbjct: 282 TYNTLISGFVREGKIEV---ATKVFDEMSLFNLLPNSITYNTLIAGHCTTGNIGEALRLM 338

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQE--NQTSRALEFLN----RVKKIVDPDGDSFAILL 224
           DVM  HG+  + V   +LL+ + +       S  LE +     RV  I      S+  ++
Sbjct: 339 DVMVSHGLRPNEVTYGALLNGLYKNAEFGMVSSILERMRMGGVRVSHI------SYTAMI 392

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           +G  K G +EEA +   +M+ +   NP+ V+ +   +    R  +++ A + +  M    
Sbjct: 393 DGLCKNGMLEEAVQLLDDML-KVSVNPD-VVTFSVLINGFFRVGKINNAKEIMCKMYKTG 450

Query: 285 CFPT-------------LKFFSNALDILVKLNDSTHAVQLWDIMVGIG------------ 319
             P              + +   AL+    +N S H    +   V +             
Sbjct: 451 LVPNGILYSTLIYNYCKMGYLKEALNAYAVMNHSGHVADHFTCNVLVATFCRYGKLEEAE 510

Query: 320 --------FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECL 371
                     L PN + ++ +I    N+ D    F  FD+M   G FP   TY  + + L
Sbjct: 511 YFMNHMSRMGLDPNSVTFDCIINGYGNSGDALKAFSVFDKMNSFGHFPSLFTYGGLLKGL 570

Query: 372 IKNKRVHEVEKFFHEM--IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
                ++E  KFFH +  I N       N  T +T    +     AI + N ++ N  LP
Sbjct: 571 CIGGHINEALKFFHRLRCIPNAVDNVIFN--TKLTSTCRSGNLSDAIALINEMVTNDFLP 628

Query: 430 LEASANELLVGLRNLGRL 447
              +   L+ GL   G++
Sbjct: 629 DNFTYTNLIAGLCKKGKI 646



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 57/277 (20%), Positives = 120/277 (43%), Gaps = 9/277 (3%)

Query: 114  YAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
            ++W+ ++    ++  F+     +R +  +G V+   TF  +   +C   +  +A      
Sbjct: 772  FSWHSLILGYCQSKSFDVAIKILRWITLEGHVIDRFTFNMLITKFCERNEMKKAFELVKQ 831

Query: 173  MSMHGVEQDVVAVNSLLSAICRQEN--QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
            M+   V  +V   N+L + + R  +  +  R L+ L     +  P    +  L+ G  + 
Sbjct: 832  MNQFMVIPNVDTYNALFNGLIRTSDFHKAHRVLQVLLESGSV--PTNKQYITLINGMCRV 889

Query: 231  GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
            GN++ A K   EM  +      H +A    +  L   K+++ A+  L +M      PT+ 
Sbjct: 890  GNIKGAMKLQDEM--KTLGISSHNVAMSAIVRGLANSKKIENAIWVLDLMLEMQIIPTVA 947

Query: 291  FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
             F+  + +  K  +   A++L  IM      L  +++ YN +I  LC N D++  F+ ++
Sbjct: 948  TFTTLMHVYCKEANVAKALELRSIMEHCHVKL--DVVAYNVLISGLCANGDIEAAFKLYE 1005

Query: 351  QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            +M     +P++  Y ++ +         E EK   ++
Sbjct: 1006 EMKQRDLWPNTSIYIVLIDSFCAGNYQIESEKLLRDI 1042



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 69/338 (20%), Positives = 141/338 (41%), Gaps = 15/338 (4%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F +   S C +G   +A+   + M  +    D     +L++ +C++    +  L     +
Sbjct: 598 FNTKLTSTCRSGNLSDAIALINEMVTNDFLPDNFTYTNLIAGLCKKGKIVAALLLSGKAI 657

Query: 210 KK-IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           +K ++ P+   +  L++G  K G+   A   F EM+ + +  P+ V A+   +    R  
Sbjct: 658 EKGLLSPNPAVYTSLVDGLLKHGHARAALYIFEEMLNK-DVEPDTV-AFNVIIDQYSRKG 715

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           +  +    L  MK +N    L  ++  L    K +       L+  M+  GF  +P+   
Sbjct: 716 KTSKVNDILSTMKSKNLCFNLATYNILLHGYAKRHAMARCFMLYKDMIRHGF--LPDKFS 773

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           ++++I   C +   D   +    +   G   D  T+NM+   + K    +E++K F E++
Sbjct: 774 WHSLILGYCQSKSFDVAIKILRWITLEGHVIDRFTFNML---ITKFCERNEMKKAF-ELV 829

Query: 389 K--NEWQPTPLNCATAITM---LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
           K  N++   P N  T   +   L+   +   A  +   +LE+G +P       L+ G+  
Sbjct: 830 KQMNQFMVIP-NVDTYNALFNGLIRTSDFHKAHRVLQVLLESGSVPTNKQYITLINGMCR 888

Query: 444 LGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
           +G +    +  +EM    I  + V M  + +   N  +
Sbjct: 889 VGNIKGAMKLQDEMKTLGISSHNVAMSAIVRGLANSKK 926



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 73/357 (20%), Positives = 146/357 (40%), Gaps = 41/357 (11%)

Query: 141  EDGVLSL--PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198
            E G+LS     + S+ D     G    A+  F+ M    VE D VA N ++    R+  +
Sbjct: 658  EKGLLSPNPAVYTSLVDGLLKHGHARAALYIFEEMLNKDVEPDTVAFNVIIDQYSRK-GK 716

Query: 199  TSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV------ERFEWNP 251
            TS+  + L+ +K K +  +  ++ ILL G+ K   +      + +M+      ++F W+ 
Sbjct: 717  TSKVNDILSTMKSKNLCFNLATYNILLHGYAKRHAMARCFMLYKDMIRHGFLPDKFSWHS 776

Query: 252  ------------------------EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF- 286
                                     HV+   TF + + +  + +E  K   ++K  N F 
Sbjct: 777  LILGYCQSKSFDVAIKILRWITLEGHVIDRFTFNMLITKFCERNEMKKAFELVKQMNQFM 836

Query: 287  --PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
              P +  ++   + L++ +D   A ++  +++  G   +P    Y  +I  +C   ++  
Sbjct: 837  VIPNVDTYNALFNGLIRTSDFHKAHRVLQVLLESGS--VPTNKQYITLINGMCRVGNIKG 894

Query: 345  VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
              +  D+M   G    ++  + I   L  +K++         M++ +  PT     T + 
Sbjct: 895  AMKLQDEMKTLGISSHNVAMSAIVRGLANSKKIENAIWVLDLMLEMQIIPTVATFTTLMH 954

Query: 405  MLLDADEPEIAIEIWNYILENGILPLEASA-NELLVGLRNLGRLSDVRRFAEEMLNR 460
            +         A+E+ + I+E+  + L+  A N L+ GL   G +    +  EEM  R
Sbjct: 955  VYCKEANVAKALELRS-IMEHCHVKLDVVAYNVLISGLCANGDIEAAFKLYEEMKQR 1010



 Score = 41.6 bits (96), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 72/176 (40%), Gaps = 6/176 (3%)

Query: 308 AVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMI 367
           AVQ + +M   G N  P++   N V+G L     VD  + FF  M+  G  PD  T+N++
Sbjct: 124 AVQTFYLMGFRGLN--PSVYTCNMVLGSLVKEQKVDMFWSFFKGMLAKGICPDVATFNIL 181

Query: 368 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 427
              L +  +         +M ++   PT +   T +         + A ++ + +   GI
Sbjct: 182 LNALCERGKFKNAGFLLRKMEESGVYPTAVTYNTLLNWYCKKGRYKAASQLIDCMASKGI 241

Query: 428 LPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY--EVTMHKLKKAFYNESR 481
                + N  +  L    R +      + M  RR ++Y  E+T + L   F  E +
Sbjct: 242 GVDVCTYNVFIDNLCRDSRSAKGYLLLKRM--RRNMVYPNEITYNTLISGFVREGK 295


>gi|242067038|ref|XP_002454808.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
 gi|241934639|gb|EES07784.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
          Length = 951

 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 82/359 (22%), Positives = 156/359 (43%), Gaps = 7/359 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIF-DSYCGAGKYDE 165
           RG  L    +  ++D L K G     +   + + E  +       ++F +  C  GK+ E
Sbjct: 531 RGLLLDHVNYTTLMDGLFKTGNMPAAFKVGQELMEKNLSPDAVVYNVFINCLCTLGKFSE 590

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILL 224
           A      M   G+E D    N++++A CR E +TS+AL+ L  +K+  + P+  ++  L+
Sbjct: 591 AKSFLKEMRNTGLEPDQATYNTMIAARCR-EGKTSKALKLLKEMKRNSIKPNLITYTTLV 649

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G  + G V++A     EM     + P   L ++  L      ++ D  L+   +M G  
Sbjct: 650 VGLLEAGVVKKAKFLLNEMASA-GFAPTS-LTHQRVLQACSGSRRPDVILEIHELMMGAG 707

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
               +  ++  + +L     + +A  + D M+  G  + P+ I +NA+I   C +  +DN
Sbjct: 708 LHADITVYNTLVHVLCCHGMARNATVVLDEMLTRG--IAPDTITFNALILGHCKSSHLDN 765

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
            F  + QM+  G  P+  T+N +   L    R+ E +    +M K   +P  L     +T
Sbjct: 766 AFAIYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADTVLSDMKKVGLEPNNLTYDILVT 825

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
                     A+ ++  ++  G +P  ++ N L+      G ++  +    EM  R +L
Sbjct: 826 GYAKKSNKVEALRLYCEMVSKGFIPKASTYNSLMSDFAKAGMMNQAKELFSEMKRRGVL 884



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 82/394 (20%), Positives = 163/394 (41%), Gaps = 15/394 (3%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG  +    +  ++D LGK G+ E+  + +R  + D +  +  T+  + D++C AG  D 
Sbjct: 356 RGVVMDLVMYTALMDRLGKEGKIEEAKDVLRHAQSDNITPNFVTYTVLVDAHCRAGNIDG 415

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILL 224
           A      M    V  +VV  +S+++ + ++     +A +++ ++K   + P+  ++  L+
Sbjct: 416 AEQVLLQMEEKSVIPNVVTFSSIINGLVKR-GCLGKAADYMRKMKDSGIAPNVVTYGTLI 474

Query: 225 EGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           +G+ K    E A   + +M+ E  E N       ++ +  L +   ++ A    + M   
Sbjct: 475 DGFFKFQGQEAALDVYRDMLHEGVEANN---FVVDSLVNGLRKNGNIEGAEALFKDMDER 531

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
                   ++  +D L K  +   A ++   +  +  NL P+ ++YN  I  LC      
Sbjct: 532 GLLLDHVNYTTLMDGLFKTGNMPAAFKVGQEL--MEKNLSPDAVVYNVFINCLCTLGKFS 589

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
               F  +M   G  PD  TYN +     +  +  +  K   EM +N  +P  +   T +
Sbjct: 590 EAKSFLKEMRNTGLEPDQATYNTMIAARCREGKTSKALKLLKEMKRNSIKPNLITYTTLV 649

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LN 459
             LL+A   + A  + N +   G  P   +   +L       R   +    E M    L+
Sbjct: 650 VGLLEAGVVKKAKFLLNEMASAGFAPTSLTHQRVLQACSGSRRPDVILEIHELMMGAGLH 709

Query: 460 RRILIYEVTMHKLKKAFYNESRSMRDIFDSLERR 493
             I +Y   +H L    +  +R+   + D +  R
Sbjct: 710 ADITVYNTLVHVL--CCHGMARNATVVLDEMLTR 741



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 81/407 (19%), Positives = 163/407 (40%), Gaps = 10/407 (2%)

Query: 92  YDSPSSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPT 149
           +    +A+D +R     G   + +  + +V+ L KNG  E      + M E G+L     
Sbjct: 480 FQGQEAALDVYRDMLHEGVEANNFVVDSLVNGLRKNGNIEGAEALFKDMDERGLLLDHVN 539

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           + ++ D     G    A      +    +  D V  N  ++ +C    + S A  FL  +
Sbjct: 540 YTTLMDGLFKTGNMPAAFKVGQELMEKNLSPDAVVYNVFINCLCTL-GKFSEAKSFLKEM 598

Query: 210 KKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           +   ++PD  ++  ++    +EG   +A K   EM +R    P +++ Y T ++ L+   
Sbjct: 599 RNTGLEPDQATYNTMIAARCREGKTSKALKLLKEM-KRNSIKP-NLITYTTLVVGLLEAG 656

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
            V +A   L  M      PT       L            +++ ++M+G G  L  ++ +
Sbjct: 657 VVKKAKFLLNEMASAGFAPTSLTHQRVLQACSGSRRPDVILEIHELMMGAG--LHADITV 714

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           YN ++ +LC +    N     D+M+  G  PD++T+N +     K+  +      + +M+
Sbjct: 715 YNTLVHVLCCHGMARNATVVLDEMLTRGIAPDTITFNALILGHCKSSHLDNAFAIYAQML 774

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
                P      T +  L  A     A  + + + + G+ P   + + L+ G        
Sbjct: 775 HQGLSPNIATFNTLLGGLESAGRIGEADTVLSDMKKVGLEPNNLTYDILVTGYAKKSNKV 834

Query: 449 DVRRFAEEMLNRRILIYEVTMHKLKKAFYNES--RSMRDIFDSLERR 493
           +  R   EM+++  +    T + L   F         +++F  ++RR
Sbjct: 835 EALRLYCEMVSKGFIPKASTYNSLMSDFAKAGMMNQAKELFSEMKRR 881



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 73/398 (18%), Positives = 157/398 (39%), Gaps = 38/398 (9%)

Query: 119 MVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           +VD L ++G+F + +   R M + GV  +  T+ ++ DS   A +  E++     M   G
Sbjct: 298 LVDGLCRDGQFSEAYALFREMDKIGVAPNHVTYCTLIDSLAKARRGSESLGLLGEMVSRG 357

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEA 236
           V  D+V   +L+  + + E +   A + L   +   + P+  ++ +L++   + GN++ A
Sbjct: 358 VVMDLVMYTALMDRLGK-EGKIEEAKDVLRHAQSDNITPNFVTYTVLVDAHCRAGNIDGA 416

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
            +   +M E+      +V+ + + +  L++   + +A  ++R MK     P +  +   +
Sbjct: 417 EQVLLQMEEKSVI--PNVVTFSSIINGLVKRGCLGKAADYMRKMKDSGIAPNVVTYGTLI 474

Query: 297 DILVKLNDSTHAVQLWDIMVGIGF---------------------------------NLM 323
           D   K      A+ ++  M+  G                                   L+
Sbjct: 475 DGFFKFQGQEAALDVYRDMLHEGVEANNFVVDSLVNGLRKNGNIEGAEALFKDMDERGLL 534

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
            + + Y  ++  L    ++   F+   +++     PD++ YN+   CL    +  E + F
Sbjct: 535 LDHVNYTTLMDGLFKTGNMPAAFKVGQELMEKNLSPDAVVYNVFINCLCTLGKFSEAKSF 594

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
             EM     +P      T I       +   A+++   +  N I P   +   L+VGL  
Sbjct: 595 LKEMRNTGLEPDQATYNTMIAARCREGKTSKALKLLKEMKRNSIKPNLITYTTLVVGLLE 654

Query: 444 LGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
            G +   +    EM +       +T  ++ +A     R
Sbjct: 655 AGVVKKAKFLLNEMASAGFAPTSLTHQRVLQACSGSRR 692



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 101/511 (19%), Positives = 187/511 (36%), Gaps = 89/511 (17%)

Query: 50  SSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSS---AVDFFRWAG 106
           S  AR++  ++   +S  + +A  C   +P   L    + LSY S  S   A+   R + 
Sbjct: 44  SPPARLLRRLIPALASSGLAAAAVCFRPVPGDTLTLNSIILSYCSLRSLRPALSLLRSSS 103

Query: 107 RGQRLSPYA-----WNLMVDVLGKNGR-------FEQM------WNAVRV---------- 138
             Q  S  A     +N+ +  L + G          +M      W+ V V          
Sbjct: 104 GPQSQSQVAADTVSYNIFLAALSEQGHGRLAPPVLSEMCKRGVSWDGVTVSTALVGLCRT 163

Query: 139 -------------MKEDGV--LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV 183
                        ++  G+  L +  + ++ D YC       A+   + M+  GV  DVV
Sbjct: 164 GLVGEAAALAEMLVRGRGIDGLDVVGWNALIDGYCKVQDMAAALAVVERMTTQGVALDVV 223

Query: 184 AVNSLLSAICRQENQTSRALEFLNR----------------------------------- 208
             NSL++      +  + ALE + R                                   
Sbjct: 224 GYNSLVAGFFHSGDADA-ALEVVERMKADGVEPNVVTYTALIGEYCKGKGMDEAFSLYEG 282

Query: 209 -VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            V+  V PD  + + L++G  ++G   EA   F EM ++    P HV  Y T + +L + 
Sbjct: 283 MVRSGVLPDVVTLSALVDGLCRDGQFSEAYALFREM-DKIGVAPNHV-TYCTLIDSLAKA 340

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV-GIGFNLMPNL 326
           ++  E+L  L  M        L  ++  +D   +L       +  D++      N+ PN 
Sbjct: 341 RRGSESLGLLGEMVSRGVVMDLVMYTALMD---RLGKEGKIEEAKDVLRHAQSDNITPNF 397

Query: 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 386
           + Y  ++   C   ++D   +   QM      P+ +T++ I   L+K   + +   +  +
Sbjct: 398 VTYTVLVDAHCRAGNIDGAEQVLLQMEEKSVIPNVVTFSSIINGLVKRGCLGKAADYMRK 457

Query: 387 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 446
           M  +   P  +   T I         E A++++  +L  G+       + L+ GLR  G 
Sbjct: 458 MKDSGIAPNVVTYGTLIDGFFKFQGQEAALDVYRDMLHEGVEANNFVVDSLVNGLRKNGN 517

Query: 447 LSDVRRFAEEMLNRRILIYEVTMHKLKKAFY 477
           +       ++M  R +L+  V    L    +
Sbjct: 518 IEGAEALFKDMDERGLLLDHVNYTTLMDGLF 548



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 53/250 (21%), Positives = 104/250 (41%), Gaps = 10/250 (4%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC---RQENQTSRALEF 205
           T   +  +  G+ + D  +   ++M   G+  D+   N+L+  +C      N T    E 
Sbjct: 679 THQRVLQACSGSRRPDVILEIHELMMGAGLHADITVYNTLVHVLCCHGMARNATVVLDEM 738

Query: 206 LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
           L R    + PD  +F  L+ G  K  +++ A   + +M+ +   +P ++  + T L  L 
Sbjct: 739 LTRG---IAPDTITFNALILGHCKSSHLDNAFAIYAQMLHQ-GLSP-NIATFNTLLGGLE 793

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN 325
              ++ EA   L  MK     P    +   +    K ++   A++L+  MV  GF  +P 
Sbjct: 794 SAGRIGEADTVLSDMKKVGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGF--IPK 851

Query: 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 385
              YN+++        ++     F +M   G    S TY+++     K +   EV     
Sbjct: 852 ASTYNSLMSDFAKAGMMNQAKELFSEMKRRGVLHTSSTYDILLNGWSKLRNGIEVRILLK 911

Query: 386 EMIKNEWQPT 395
           +M +  ++P+
Sbjct: 912 DMKELGFKPS 921


>gi|449493486|ref|XP_004159312.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 772

 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 91/393 (23%), Positives = 163/393 (41%), Gaps = 40/393 (10%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDE 165
           RG   +   +N++V+ L K G  EQ    +  M   G+ +S  T+  + + +C  G + E
Sbjct: 244 RGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVE 303

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A    + M        +   N+L+  +C+    T   L F + +K    PD  SF  LL 
Sbjct: 304 AFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLY 363

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+ + G + EA   F E+  R +  P  V+ Y T +  L     +D AL+  + M  +  
Sbjct: 364 GYCRTGCISEAFLLFDELKCR-DLVPT-VITYNTLIHGLCMWGYLDAALRLKKEMTDQGL 421

Query: 286 FPTL--------------------KFFSNALD-------------IL--VKLNDSTHAVQ 310
           FP +                     FF+  L              I+  +K+ D++ A  
Sbjct: 422 FPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFS 481

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
           + + M+  GF   P++I YN  +  LC   + +      + MV  G  PD +TY  I   
Sbjct: 482 MQEEMLAAGFP--PDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIING 539

Query: 371 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 430
            +KN  + +  + F+EM+     P+ +     I         ++A   ++ +LE  +   
Sbjct: 540 FVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPAN 599

Query: 431 EASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
             + N ++ GL    R+ +  ++ +EM  + IL
Sbjct: 600 VITYNAIINGLCMTRRMDEAYKYFDEMEEKGIL 632



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 106/481 (22%), Positives = 188/481 (39%), Gaps = 70/481 (14%)

Query: 76  GIIPTPDLVHEVLQLSYDSPSSAVDFFRW--AGRGQRLSPYAWNLMVDVL-GKNGRFEQM 132
            +I  P L   VL      P  A+ FFRW  A    + S + +  ++D+L G +      
Sbjct: 80  AVITDPHLFIRVLHSMRIRPRVALRFFRWVMAQPDFKESEFVFCAILDILVGNDLMHAAY 139

Query: 133 WNAVRVMKED--GVLSLPTFASI-----FDSYCGAGKY--------------DEAVMS-- 169
           W   RV+  +  GV+ +     +     FD     G                DE ++S  
Sbjct: 140 WVMERVVSFEMHGVVDVLIAGHVXCLLVFDKMIRNGLLPDVKNCNRILRVLRDENLLSKA 199

Query: 170 ---FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLE 225
              + +M   G++  VV  N++L + C+ E +  +ALE L+ ++ +   P+  ++ +L+ 
Sbjct: 200 KNVYGMMEQFGIKPTVVTYNTMLDSYCK-EGRVDQALELLSEMQERGCYPNDVTYNVLVN 258

Query: 226 GWEKEGNVEEANKTFGEM------VERFEWNP---------------------------E 252
           G  K+G +E+A     EM      V  + +NP                            
Sbjct: 259 GLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFP 318

Query: 253 HVLAYETFLITLIRGKQVDEA-LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
            +  Y T +  L +  QV    L+F  ++K +   P +  F++ L    +    + A  L
Sbjct: 319 TLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFT-PDIVSFNSLLYGYCRTGCISEAFLL 377

Query: 312 WDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECL 371
           +D +     +L+P +I YN +I  LC    +D   R   +M   G FPD  TY ++    
Sbjct: 378 FDELKCR--DLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGC 435

Query: 372 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 431
            K   V     FF+EM+    +P      T I   +   +  +A  +   +L  G  P  
Sbjct: 436 FKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDV 495

Query: 432 ASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES--RSMRDIFDS 489
            + N  +  L   G   +     E M++  ++   VT   +   F      R  R++F+ 
Sbjct: 496 ITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNE 555

Query: 490 L 490
           +
Sbjct: 556 M 556



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 90/205 (43%), Gaps = 4/205 (1%)

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA 236
           G   DV+  N  + A+C+Q N         N V   + PD  ++  ++ G+ K G++ +A
Sbjct: 490 GFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKA 549

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
            + F EM+ +       V+ Y   +      + +D A  +   M  ++    +  ++  +
Sbjct: 550 REVFNEMLSK--GVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAII 607

Query: 297 DILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG 356
           + L        A + +D M   G  ++PN   Y  +I   CN    +   R + +M+   
Sbjct: 608 NGLCMTRRMDEAYKYFDEMEEKG--ILPNKFSYTILINESCNMGYWEEALRLYREMLDRK 665

Query: 357 AFPDSLTYNMIFECLIKNKRVHEVE 381
             PDS T+++  + L ++ +VH V+
Sbjct: 666 IQPDSFTHSVFLKNLHRDYQVHAVQ 690


>gi|414871694|tpg|DAA50251.1| TPA: hypothetical protein ZEAMMB73_705675 [Zea mays]
          Length = 1161

 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 150/342 (43%), Gaps = 6/342 (1%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176
           N++++ L  NG F +  + ++ MK   + +  T+ +I   Y   G++  A+   + M   
Sbjct: 230 NILLNSLCTNGEFRKAEDMLQKMKSCHISNSVTYNTILHWYVKKGRFKAALCVLEDMERD 289

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEE 235
            V+ DV   N ++  +CR +  T RA   L R++K  + PD  ++  L+ G+ +EG +  
Sbjct: 290 SVQADVYTYNIMIDKLCRIKRST-RAFLLLKRMRKDDLTPDECTYNTLINGFFREGKINH 348

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
           A   F  M+ R    P  V  Y T +    R +++D+AL  L  M+     P+   +S  
Sbjct: 349 ARYVFNHML-RQNLVPS-VATYTTMIDGYCRNRRIDKALSILSEMQITGVMPSELTYSAL 406

Query: 296 LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
           L+   K++    A+ L + +   G  +  N  M   +I   C   ++    +    M   
Sbjct: 407 LNGYCKVSMLGPAIYLMEDLKSRGITI--NKTMRTILIDGFCQVGEISKAKQILKSMFED 464

Query: 356 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 415
           G  PD +TY+ +   + +  ++HE ++    M K+   P  +   T I     A   + A
Sbjct: 465 GIDPDVITYSALINGMCRMAKMHETKEILSRMQKSGILPNDVLYTTLICYYCKAGYVKEA 524

Query: 416 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           ++ +  I   G++      N LL      G +++   F + M
Sbjct: 525 LKHFVDIYRRGLVANPVIHNALLHAFYREGMITEAEHFRQYM 566



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/368 (20%), Positives = 143/368 (38%), Gaps = 38/368 (10%)

Query: 149  TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
            TF ++    C  G  DEA+   + M  +    D+     LLS  CR+       +     
Sbjct: 647  TFNALLLGICRYGTLDEALDLCEKMIKNNCLPDIHTYTILLSGFCRKGKILPALVILQMM 706

Query: 209  VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
            ++K V PD  ++  LL G   EG V+ A+  F E++ + E      +AY + +   ++ +
Sbjct: 707  LEKGVVPDTVAYTCLLNGLINEGQVKAASYVFHEIICK-EGLYADCIAYNSLMNGYLKSR 765

Query: 269  QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
             V+   + +  M     +P    ++  +   VK    + ++ L+  MV  G    P+ + 
Sbjct: 766  NVNTIKRMMSDMYQNEVYPNSASYNILMHGYVKRGQFSKSLYLYKYMVRKGIR--PDNVT 823

Query: 329  YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM----------------IFEC-- 370
            Y  +I  L     +D   +F ++MV  G FPD L +++                +F C  
Sbjct: 824  YRLLILGLSECGLIDIAVKFLEKMVLEGIFPDRLVFDILITAFSEKSKMHNALQVFNCMK 883

Query: 371  -----------------LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
                             LI+   +    K  HEM++   QP   +    +       E +
Sbjct: 884  WLHMSPSSKTFSAMINGLIRKGYLDHSHKVLHEMLQVGLQPNHTHYIALVNAKCRVGEID 943

Query: 414  IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 473
             A  +   +   GI+P E + + ++ GL   G+L +       M+   ++    T   L 
Sbjct: 944  RAFRLKEEMKAIGIVPAEVAESSIIRGLCRCGKLEEAVIVFSSMMRSGMVPTVATFTTLM 1003

Query: 474  KAFYNESR 481
             +   ES+
Sbjct: 1004 HSLCKESK 1011



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 78/351 (22%), Positives = 146/351 (41%), Gaps = 9/351 (2%)

Query: 139 MKEDGVLSLPTFASIF-DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           +K  G+    T  +I  D +C  G+  +A      M   G++ DV+  ++L++ +CR   
Sbjct: 426 LKSRGITINKTMRTILIDGFCQVGEISKAKQILKSMFEDGIDPDVITYSALINGMCRMA- 484

Query: 198 QTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVL 255
           +     E L+R++K  + P+   +  L+  + K G V+EA K F ++  R    NP   +
Sbjct: 485 KMHETKEILSRMQKSGILPNDVLYTTLICYYCKAGYVKEALKHFVDIYRRGLVANP---V 541

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
            +   L    R   + EA  F + M   N       F+  +D      +   A  ++D M
Sbjct: 542 IHNALLHAFYREGMITEAEHFRQYMSRMNISFDSVSFNRIIDSYCHRGNIVGAFSVYDDM 601

Query: 316 VGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 375
           V  G++  PN+  Y  ++  LC    +    +F   ++      D  T+N +   + +  
Sbjct: 602 VRYGYS--PNVCTYQNLLRGLCQGGHLVQARQFMSCLLDIPFAIDEKTFNALLLGICRYG 659

Query: 376 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 435
            + E      +MIKN   P        ++      +   A+ I   +LE G++P   +  
Sbjct: 660 TLDEALDLCEKMIKNNCLPDIHTYTILLSGFCRKGKILPALVILQMMLEKGVVPDTVAYT 719

Query: 436 ELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDI 486
            LL GL N G++        E++ +  L  +   +      Y +SR++  I
Sbjct: 720 CLLNGLINEGQVKAASYVFHEIICKEGLYADCIAYNSLMNGYLKSRNVNTI 770



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 64/323 (19%), Positives = 133/323 (41%), Gaps = 19/323 (5%)

Query: 115  AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSFD 171
            ++N+++    K G+F +     + M   G+   P   T+  +       G  D AV   +
Sbjct: 788  SYNILMHGYVKRGQFSKSLYLYKYMVRKGIR--PDNVTYRLLILGLSECGLIDIAVKFLE 845

Query: 172  VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKE 230
             M + G+  D +  + L++A   ++++   AL+  N +K + + P   +F+ ++ G  ++
Sbjct: 846  KMVLEGIFPDRLVFDILITAF-SEKSKMHNALQVFNCMKWLHMSPSSKTFSAMINGLIRK 904

Query: 231  GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK----QVDEALKFLRVMKGENCF 286
            G ++ ++K   EM++     P H     T  I L+  K    ++D A +    MK     
Sbjct: 905  GYLDHSHKVLHEMLQ-VGLQPNH-----THYIALVNAKCRVGEIDRAFRLKEEMKAIGIV 958

Query: 287  PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346
            P     S+ +  L +      AV ++  M+  G  ++P +  +  ++  LC    + +  
Sbjct: 959  PAEVAESSIIRGLCRCGKLEEAVIVFSSMMRSG--MVPTVATFTTLMHSLCKESKIADAL 1016

Query: 347  RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406
                 M       D ++YN++   L K+K + +    + EM      P      T    +
Sbjct: 1017 HLKRLMELCRLRVDVVSYNVLITGLCKDKHISDALDLYGEMKSKGLWPNITTYITLTGAM 1076

Query: 407  LDADEPEIAIEIWNYILENGILP 429
                  +   E+   I E G++P
Sbjct: 1077 YSTGRVQNGEELLEDIEERGLIP 1099



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 67/374 (17%), Positives = 155/374 (41%), Gaps = 48/374 (12%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT-FASIFDSYCGAGKYDEAVMSFDVM 173
            ++ +++ + +  +  +    +  M++ G+L     + ++   YC AG   EA+  F  +
Sbjct: 472 TYSALINGMCRMAKMHETKEILSRMQKSGILPNDVLYTTLICYYCKAGYVKEALKHFVDI 531

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGN 232
              G+  + V  N+LL A  R E   + A  F   + ++ +  D  SF  +++ +   GN
Sbjct: 532 YRRGLVANPVIHNALLHAFYR-EGMITEAEHFRQYMSRMNISFDSVSFNRIIDSYCHRGN 590

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +  A   + +MV R+ ++P +V  Y+  L  L +G  + +A +F+               
Sbjct: 591 IVGAFSVYDDMV-RYGYSP-NVCTYQNLLRGLCQGGHLVQARQFM--------------- 633

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           S  LDI   +++ T                      +NA++  +C    +D      ++M
Sbjct: 634 SCLLDIPFAIDEKT----------------------FNALLLGICRYGTLDEALDLCEKM 671

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
           + +   PD  TY ++     +  ++         M++    P  +     +  L++  + 
Sbjct: 672 IKNNCLPDIHTYTILLSGFCRKGKILPALVILQMMLEKGVVPDTVAYTCLLNGLINEGQV 731

Query: 413 EIAIEIWNYIL-ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL----IYEV 467
           + A  +++ I+ + G+     + N L+ G      ++ ++R   +M    +      Y +
Sbjct: 732 KAASYVFHEIICKEGLYADCIAYNSLMNGYLKSRNVNTIKRMMSDMYQNEVYPNSASYNI 791

Query: 468 TMHK-LKKAFYNES 480
            MH  +K+  +++S
Sbjct: 792 LMHGYVKRGQFSKS 805


>gi|357449161|ref|XP_003594857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483905|gb|AES65108.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 90/390 (23%), Positives = 174/390 (44%), Gaps = 21/390 (5%)

Query: 81  PDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMK 140
           P   H +    + SPS+     +W     +L   ++  +++    +  F  +   +  MK
Sbjct: 36  PHTHHSLPPQIFKSPSNTSSH-KWGSY--KLGDLSFYSLIENFSNSLDFTSLEQLLHQMK 92

Query: 141 -EDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVE----QDVVAVNSLLSAICRQ 195
            E+ V    +F  +F +Y   GK      + D+    G E    Q V + N++L+ +  Q
Sbjct: 93  CENRVFIEKSFIIMFKAY---GKAHLPQKALDLFHRMGAEFHCKQTVKSFNTVLNVVI-Q 148

Query: 196 ENQTSRALEFLNRVKKI-----VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
           E     ALEF N V        + P+G SF ++++   + GNV++A + F  M +R    
Sbjct: 149 EGCFDLALEFYNHVIDSNSFSNIQPNGLSFNLVIKALCRVGNVDQAVEVFRGMSDRNCVA 208

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
             +   Y T +  L    ++DEA+  L  M+ E  FP    F+  +  L K  D + A +
Sbjct: 209 DGY--TYSTLMHGLCNEGRIDEAVSLLDEMQVEGTFPNPVAFNVLISALCKKGDLSRASK 266

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
           L D M   G   +PN + YN+++  LC    +D      ++MV +   P+ +T+  + + 
Sbjct: 267 LVDNMFLKG--CVPNEVTYNSLVHGLCLKGKLDKAMSLLNRMVANKCVPNDITFGTLVDG 324

Query: 371 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 430
            +K+ R  +  +    + +  ++    + ++ I+ L    + E  +++W  ++E G  P 
Sbjct: 325 FVKHGRALDGVRVLVSLEEKGYRGNEFSYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPN 384

Query: 431 EASANELLVGLRNLGRLSDVRRFAEEMLNR 460
               + L+ GL   G+  + + +  EM N+
Sbjct: 385 TIVYSALIDGLCREGKPDEAKEYLIEMKNK 414



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 80/365 (21%), Positives = 152/365 (41%), Gaps = 40/365 (10%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKE-DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++NL++  L + G  +Q     R M + + V    T++++    C  G+ DEAV   D M
Sbjct: 177 SFNLVIKALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEM 236

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
            + G   + VA N L+SA+C++ +        L+R  K+VD       + L+G       
Sbjct: 237 QVEGTFPNPVAFNVLISALCKKGD--------LSRASKLVD------NMFLKGCV----- 277

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
                            P  V  Y + +  L    ++D+A+  L  M    C P    F 
Sbjct: 278 -----------------PNEV-TYNSLVHGLCLKGKLDKAMSLLNRMVANKCVPNDITFG 319

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +D  VK   +   V++   +   G+    N   Y+++I  L      ++  + + +MV
Sbjct: 320 TLVDGFVKHGRALDGVRVLVSLEEKGYR--GNEFSYSSLISGLFKEGKGEHGMQLWKEMV 377

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G  P+++ Y+ + + L +  +  E +++  EM      P     ++ +    +A +  
Sbjct: 378 EKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKGHTPNSFTYSSLMWGYFEAGDIH 437

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 473
            AI +W  + +N     E   + L+ GL   G+L +     ++ML+R I +  V    + 
Sbjct: 438 KAILVWKEMTDNDCNHHEVCYSILINGLCKNGKLKEALIVWKQMLSRGIKLDVVAYSSMI 497

Query: 474 KAFYN 478
             F N
Sbjct: 498 HGFCN 502



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 92/406 (22%), Positives = 164/406 (40%), Gaps = 46/406 (11%)

Query: 98  AVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFD 155
           AV+ FR  + R      Y ++ ++  L   GR ++  + +  M+ +G    P  F  +  
Sbjct: 194 AVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEMQVEGTFPNPVAFNVLIS 253

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV--KKIV 213
           + C  G    A    D M + G   + V  NSL+  +C +  +  +A+  LNR+   K V
Sbjct: 254 ALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLK-GKLDKAMSLLNRMVANKCV 312

Query: 214 DPD--------------------------------GD--SFAILLEGWEKEGNVEEANKT 239
             D                                G+  S++ L+ G  KEG  E   + 
Sbjct: 313 PNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSSLISGLFKEGKGEHGMQL 372

Query: 240 FGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299
           + EMVE+      + + Y   +  L R  + DEA ++L  MK +   P    +S+ +   
Sbjct: 373 WKEMVEK--GCKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKGHTPNSFTYSSLMWGY 430

Query: 300 VKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFP 359
            +  D   A+ +W  M     N   + + Y+ +I  LC N  +      + QM+  G   
Sbjct: 431 FEAGDIHKAILVWKEMTDNDCN--HHEVCYSILINGLCKNGKLKEALIVWKQMLSRGIKL 488

Query: 360 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKN--EWQPTPLNCATAITMLLDADEPEIAIE 417
           D + Y+ +       + V +  K F++M+ +  + QP  +     +      +    AI+
Sbjct: 489 DVVAYSSMIHGFCNAQLVEQGMKLFNQMLCHNPKLQPDVVTYNILLNAFCTKNSVSRAID 548

Query: 418 IWNYILENGILPLEASANELLVGLR-NLGRLSDVRRFAEEMLNRRI 462
           I N +L+ G  P   + +  L  LR N+    D R F +E++ R I
Sbjct: 549 ILNTMLDQGCDPDFITCDIFLKTLRDNMDPPQDGREFLDELVVRLI 594



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 90/218 (41%), Gaps = 3/218 (1%)

Query: 272 EALKFLRVMKGE-NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF--NLMPNLIM 328
           +AL     M  E +C  T+K F+  L+++++      A++ ++ ++      N+ PN + 
Sbjct: 118 KALDLFHRMGAEFHCKQTVKSFNTVLNVVIQEGCFDLALEFYNHVIDSNSFSNIQPNGLS 177

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           +N VI  LC   +VD     F  M       D  TY+ +   L    R+ E      EM 
Sbjct: 178 FNLVIKALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEMQ 237

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
                P P+     I+ L    +   A ++ + +   G +P E + N L+ GL   G+L 
Sbjct: 238 VEGTFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLD 297

Query: 449 DVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDI 486
                   M+  + +  ++T   L   F    R++  +
Sbjct: 298 KAMSLLNRMVANKCVPNDITFGTLVDGFVKHGRALDGV 335


>gi|356529507|ref|XP_003533332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 82/361 (22%), Positives = 161/361 (44%), Gaps = 9/361 (2%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYD 164
           GR  + +   +N ++D L K     + +     M   G+ + + T+ ++   +C A K  
Sbjct: 192 GRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGISADVVTYTTLIYGFCIASKLK 251

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAIL 223
           EA+   + M +  +  +V   N L+ A+C+ E +   A   L   +K  V PD  +++ L
Sbjct: 252 EAIGLLNEMVLKTINPNVYTYNILVDALCK-EGKVKEAKNVLAVMLKACVKPDVITYSTL 310

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           ++G+     +++A   F  M       P+ V +Y   +    + K VDEAL   + M  +
Sbjct: 311 MDGYFLVYELKKAQHVFNAM-SLMGVTPD-VHSYTILINGFCKNKMVDEALNLFKEMHQK 368

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP-NLIMYNAVIGLLCNNDDV 342
           N  P +  +S+ +D L K   S     +WD++  +    +P N+I YN++I  LC N  +
Sbjct: 369 NMVPGIVTYSSLIDGLCK---SGRISYVWDLIDEMRDRGIPANVITYNSLIDGLCKNGHL 425

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
           D     F++M   G  P S T+ ++ + L K  R+ + ++ F +++   +          
Sbjct: 426 DRAIALFNKMKDQGIRPCSFTFTILLDGLCKGGRLKDAQEAFQDLLTKGYHLDVYKYNVM 485

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
           I         E A+ + + + ENG +P   + + ++  L          +   +M+ R +
Sbjct: 486 INGHCKQGLLEEALTMLSKMEENGCVPNAVTFDIIINALFKKDENDKAEKLLRQMICRGL 545

Query: 463 L 463
           L
Sbjct: 546 L 546



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 72/351 (20%), Positives = 145/351 (41%), Gaps = 16/351 (4%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F  I DS+     Y  AV     + + G++ D++ +N L++  C    Q +     L ++
Sbjct: 62  FNKILDSFAKIKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHM-GQITFGFSVLAKI 120

Query: 210 -KKIVDPDGDSFAILLEGWEKEGNVEEA----NKTFGEMVERFEWNPEHVLAYETFLITL 264
            K+   P   +F  L++G   +G V +A    +K   + + +F+      ++Y T +  +
Sbjct: 121 LKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQGI-KFDQ-----VSYGTLINGV 174

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
            +      A+K +R + G    P ++ ++  +D L K    + A  L+  M   G +   
Sbjct: 175 CKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGIS--A 232

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           +++ Y  +I   C    +       ++MV     P+  TYN++ + L K  +V E +   
Sbjct: 233 DVVTYTTLIYGFCIASKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKNVL 292

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
             M+K   +P  +  +T +       E + A  ++N +   G+ P   S   L+ G    
Sbjct: 293 AVMLKACVKPDVITYSTLMDGYFLVYELKKAQHVFNAMSLMGVTPDVHSYTILINGFCKN 352

Query: 445 GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLERR 493
             + +     +EM  + ++   VT   L        R   + D+ D +  R
Sbjct: 353 KMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDR 403


>gi|125538899|gb|EAY85294.1| hypothetical protein OsI_06665 [Oryza sativa Indica Group]
          Length = 632

 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 143/303 (47%), Gaps = 14/303 (4%)

Query: 161 GKYDEAVMSFDVMSMHG-VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGD 218
           G+Y++    ++ MS  G  + D V  ++L+SA C+   Q S A+  LN +K+  + P   
Sbjct: 208 GQYEKVHELYNEMSNEGHCQPDTVTYSALISAFCKLGRQDS-AIRLLNEMKENGMQPTAK 266

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
            + +++  + K  NV  A   F EM  R+ +    V  Y   +  L +  ++DEA  F  
Sbjct: 267 IYTMIISLFFKLDNVHGALSLFEEM--RYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYH 324

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI-GLLC 337
            M+ E C P     +N ++ L K       ++L++ M G+  + +PN++ YN +I  L  
Sbjct: 325 EMQREGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEM-GVS-HCIPNVVTYNTIIKALFE 382

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
           +   V  VF +F++M   G  P   TY+++ +   K  R+ +      EM +  + P P 
Sbjct: 383 SKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPA 442

Query: 398 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL---GRLSDVRRFA 454
              + I  L  A   ++A E++  + EN      +SA    V +++L   GRL D     
Sbjct: 443 AYCSLIDALGKAKRYDLACELFQELKENC---GSSSARVYAVMIKHLGKAGRLDDAINLF 499

Query: 455 EEM 457
           +EM
Sbjct: 500 DEM 502



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 89/385 (23%), Positives = 172/385 (44%), Gaps = 15/385 (3%)

Query: 43  HLDAPYISSSARI--ICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSY--DSPSSA 98
           H     ++ SA I   C++    S+  + + +   G+ PT  +   ++ L +  D+   A
Sbjct: 225 HCQPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGA 284

Query: 99  VDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDS 156
           +  F    R     P  + +  ++  LGK GR ++ ++    M+ +G        +   +
Sbjct: 285 LSLFEEM-RYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREGCKPDTVVMNNMIN 343

Query: 157 YCG-AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VD 214
           + G AG+ D+ +  F+ M +     +VV  N+++ A+   +++ S    +  R+K   + 
Sbjct: 344 FLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGIS 403

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           P   +++IL++G+ K   +E+A     EM E+    P    AY + +  L + K+ D A 
Sbjct: 404 PSPFTYSILIDGFCKTNRIEKAMMLLEEMDEK--GFPPCPAAYCSLIDALGKAKRYDLAC 461

Query: 275 KFLRVMKGENC-FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
           +  + +K ENC   + + ++  +  L K      A+ L+D M  +G    PN+  YNA++
Sbjct: 462 ELFQELK-ENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCT--PNVYAYNALM 518

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
             L     +D       +M  HG  PD  +YN+I   L K    H   +    M  +  +
Sbjct: 519 SGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIK 578

Query: 394 PTPLNCATAITMLLDADEPEIAIEI 418
           P  ++  T ++ L  A   E A E+
Sbjct: 579 PDAVSYNTVLSALSHAGMFEEAAEL 603



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/307 (21%), Positives = 122/307 (39%), Gaps = 44/307 (14%)

Query: 72  LACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRW----AGRGQRLSPYAWNLMVDVLGKNG 127
           +  +  IP     + +++  ++S S   + F W     G G   SP+ +++++D   K  
Sbjct: 361 MGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTN 420

Query: 128 RFEQMWNAVRVMKEDGVLSLPT-FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN 186
           R E+    +  M E G    P  + S+ D+   A +YD A   F  +             
Sbjct: 421 RIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQEL------------- 467

Query: 187 SLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
                   +EN  S +                 +A++++   K G +++A   F EM  +
Sbjct: 468 --------KENCGSSSARV--------------YAVMIKHLGKAGRLDDAINLFDEM-SK 504

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
               P +V AY   +  L R   +DEAL  +R M+   C P +  ++  L+ L K     
Sbjct: 505 LGCTP-NVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPH 563

Query: 307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM 366
            A+++   M      + P+ + YN V+  L +    +       +M   G   D +TY+ 
Sbjct: 564 RAMEMLTNMKN--STIKPDAVSYNTVLSALSHAGMFEEAAELMKEMNALGFEYDLITYSS 621

Query: 367 IFECLIK 373
           I E + K
Sbjct: 622 ILEAIGK 628



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 91/226 (40%), Gaps = 1/226 (0%)

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNL 326
            K + +A+     +K   C PT + +++ + +L+         +L++ M   G +  P+ 
Sbjct: 172 AKMIGKAITIFYQIKARKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMSNEG-HCQPDT 230

Query: 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 386
           + Y+A+I   C     D+  R  ++M  +G  P +  Y MI     K   VH     F E
Sbjct: 231 VTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEE 290

Query: 387 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 446
           M     +P        I  L  A   + A   ++ +   G  P     N ++  L   GR
Sbjct: 291 MRYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREGCKPDTVVMNNMINFLGKAGR 350

Query: 447 LSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLER 492
           L D  +  EEM     +   VT + + KA +     + ++F   ER
Sbjct: 351 LDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFER 396


>gi|302755068|ref|XP_002960958.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
 gi|300171897|gb|EFJ38497.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
          Length = 479

 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 123/279 (44%), Gaps = 9/279 (3%)

Query: 117 NLMVDVLGKNGRFEQMWNAVR-VMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
           N ++D+L +  R EQ+    R +  +D   +  ++  +  + C  GK D+A  +   M+ 
Sbjct: 4   NALLDLLERARRSEQIVVVFRRIFSQDCKPNALSYCYLVKALCRTGKIDKACSTIAEMAR 63

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEE 235
             +  DV   N ++  +C+   + SRA+EF    + + +PD  ++  LL G  K G V +
Sbjct: 64  EKLVPDVFTYNVVIDTLCK-ARRISRAIEFF---ETMPEPDVVTYNTLLGGLCKNGRVAQ 119

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
           A   FG M E     P  V  Y T +    +  Q + A   L++M    C PT+  + + 
Sbjct: 120 ACSLFGSM-EGAGITPSDV-TYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSI 177

Query: 296 LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
           ++ L K      A QL++ M   G    P+ + YN +I  LC    +         MV +
Sbjct: 178 INGLCKNRKVDQAYQLFEEMKLAGCK--PDRVTYNTLIHGLCVKQRLHEAKDLLTVMVEN 235

Query: 356 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
           G  PD +T+  + E L    R+ E    F  M K    P
Sbjct: 236 GFQPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAP 274



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 75/361 (20%), Positives = 135/361 (37%), Gaps = 40/361 (11%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F    G G   S   +  ++DV  K  +FE  +  +++M       ++ ++ SI +  C 
Sbjct: 124 FGSMEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCK 183

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
             K D+A   F+ M + G + D V  N+L+  +C ++            V+    PD  +
Sbjct: 184 NRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENGFQPDKIT 243

Query: 220 FAILLEGWEKEGNVEEANKTFGEM-------------------------------VERFE 248
           F  L+EG      ++EA   F  M                               V  + 
Sbjct: 244 FTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCILRKLRPALSVVRNYP 303

Query: 249 WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHA 308
             PE V+ Y      L R +  D A + L+ M      P +  ++     L    +   A
Sbjct: 304 ACPEAVILYTPIFRELGRRRGFDRAARLLQKMARRGVPPNVVTYTAFFKGLGDWKEGMRA 363

Query: 309 VQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD---NVFRFFDQMVFHGAFPDSLTYN 365
            + +  M+  G    P+++ YN ++   C  D +D    + R+ DQ    G  P+ +TYN
Sbjct: 364 YREFRRMLEQGIE--PDMVAYNVLVDGFCKADRLDMAEKMVRYMDQ---SGLPPNIVTYN 418

Query: 366 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 425
            +     +  +V  + +  H M+    QP     +T +  L    + + A    N  +  
Sbjct: 419 TLVGHHCRKGKVEAIGELLHTMVSRGRQPDVATWSTLVAGLFMVGQADAAYSFLNLAMSQ 478

Query: 426 G 426
           G
Sbjct: 479 G 479



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 111/282 (39%), Gaps = 43/282 (15%)

Query: 183 VAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
           V  N+LL  + R        + F     +   P+  S+  L++   + G +++A  T  E
Sbjct: 1   VTCNALLDLLERARRSEQIVVVFRRIFSQDCKPNALSYCYLVKALCRTGKIDKACSTIAE 60

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
           M  R +  P+ V  Y   + TL + +++  A++F   M      P +  ++  L  L K 
Sbjct: 61  MA-REKLVPD-VFTYNVVIDTLCKARRISRAIEFFETMPE----PDVVTYNTLLGGLCKN 114

Query: 303 NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI-------------GL-------------- 335
                A  L+  M G G  + P+ + Y  +I             GL              
Sbjct: 115 GRVAQACSLFGSMEGAG--ITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVY 172

Query: 336 --------LCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
                   LC N  VD  ++ F++M   G  PD +TYN +   L   +R+HE +     M
Sbjct: 173 SYCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVM 232

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
           ++N +QP  +     I  L   D  + A  ++  + + G  P
Sbjct: 233 VENGFQPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAP 274



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/351 (20%), Positives = 142/351 (40%), Gaps = 17/351 (4%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++  L KNGR  Q  +    M+  G+  S  T+ ++ D +C   +++ A     +M+
Sbjct: 104 YNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMA 163

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNV 233
                  V +  S+++ +C+   +  +A +    +K     PD  ++  L+ G   +  +
Sbjct: 164 SRKCSPTVYSYCSIINGLCKNR-KVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRL 222

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL---K 290
            EA      MVE   + P+ +  +   +  L    ++ EA    + M  + C P L    
Sbjct: 223 HEAKDLLTVMVEN-GFQPDKI-TFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHT 280

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN-LIMYNAVIGLLCNNDDVDNVFRFF 349
              + L IL KL  +   V+         +   P  +I+Y  +   L      D   R  
Sbjct: 281 VLVSKLCILRKLRPALSVVR--------NYPACPEAVILYTPIFRELGRRRGFDRAARLL 332

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 409
            +M   G  P+ +TY   F+ L   K      + F  M++   +P  +     +     A
Sbjct: 333 QKMARRGVPPNVVTYTAFFKGLGDWKEGMRAYREFRRMLEQGIEPDMVAYNVLVDGFCKA 392

Query: 410 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           D  ++A ++  Y+ ++G+ P   + N L+      G++  +      M++R
Sbjct: 393 DRLDMAEKMVRYMDQSGLPPNIVTYNTLVGHHCRKGKVEAIGELLHTMVSR 443



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/199 (21%), Positives = 81/199 (40%), Gaps = 6/199 (3%)

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
           + L+Y   +  L R  ++D+A   +  M  E   P +  ++  +D L K    + A++ +
Sbjct: 34  NALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRISRAIEFF 93

Query: 313 DIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 372
           + M        P+++ YN ++G LC N  V      F  M   G  P  +TY  + +   
Sbjct: 94  ETMPE------PDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFC 147

Query: 373 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 432
           K  +          M   +  PT  +  + I  L    + + A +++  +   G  P   
Sbjct: 148 KMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRV 207

Query: 433 SANELLVGLRNLGRLSDVR 451
           + N L+ GL    RL + +
Sbjct: 208 TYNTLIHGLCVKQRLHEAK 226


>gi|356570295|ref|XP_003553325.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Glycine max]
          Length = 516

 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 101/426 (23%), Positives = 181/426 (42%), Gaps = 21/426 (4%)

Query: 49  ISSSARIICEILAHASS--DDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAG 106
           +S   + I +I+    S     +  L    +  +  LV EVL  + +   +A  FF WAG
Sbjct: 28  LSQDVKTILDIMHEMGSGPSQTKQKLEHCSVDLSAKLVVEVLLRTRNDWEAAFTFFLWAG 87

Query: 107 R--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED----GVLSLPTFASIFDSYCGA 160
           +  G   S   ++ M+ +LGK  +F+  WN +  M+       +++  T   +   YC  
Sbjct: 88  KQPGYAHSIREYHSMISILGKMRKFDTAWNLIEEMRRGRTGPSLVTPQTLLIMIRKYCAV 147

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN-QTSRALEFLNRVKKIVDPDGDS 219
                A+ +F        +  +   +SLLSA+CR +N Q +  L F N  K +   D  S
Sbjct: 148 HDVARAINTFYAYKQFNFQVGLEEFHSLLSALCRYKNVQDAEHLLFCN--KNLFPLDTKS 205

Query: 220 FAILLEGW-EKEGNVEEANKTFGEMVERFEWNPEH-VLAYETFLITLIRGKQVDEALKFL 277
           F I+L GW     +   A + + EM +R     +H V++Y + +    +  ++ + L+  
Sbjct: 206 FNIILNGWCNLIVSTSHAERIWHEMSKR---RIQHDVVSYGSIISCYSKSSKLYKVLRMF 262

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337
             MK     P  K ++  +  L K      AV L  I      ++ PN++ YN++I  LC
Sbjct: 263 DEMKKRKITPDRKVYNAVIYALAKGRLVKEAVNL--IGTLEDNDVTPNVVTYNSLIKPLC 320

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
               VD   + F +++     P   T++  F  L   + V E+     +M +    PT  
Sbjct: 321 KAGKVDEAKQLFYEILKRHLSPTIQTFHAFFRILRTKEEVFEL---LDKMKELGCYPTIE 377

Query: 398 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
                +       + +   ++W+ + E+GI    +S   L+ GL   G+L +   +  EM
Sbjct: 378 TYIMLMRKFCRWRQLDDVFKMWDAMREDGIGHDRSSYIVLIHGLFLNGKLEEAHTYYAEM 437

Query: 458 LNRRIL 463
             +  L
Sbjct: 438 QEKGFL 443


>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
          Length = 748

 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 80/393 (20%), Positives = 170/393 (43%), Gaps = 15/393 (3%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G + +PY +N ++ +L K G+  +    +R M  +G+      + ++ D +C  G    
Sbjct: 317 KGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSS 376

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE----FLNRVKKIVDPDGDSFA 221
           A   FD M    +  D +   +++  +C    QT R +E    F   V K ++PD  ++ 
Sbjct: 377 AYRLFDEMQKRKISPDFITYTAVICGLC----QTGRVMEADKLFHEMVCKRLEPDEVTYT 432

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L++G+ KEG ++EA     +M++     P +++ Y      L +  +VD A + L  M 
Sbjct: 433 ALIDGYCKEGKMKEAFSLHNQMLQ-MGLTP-NIVTYTALADGLCKCGEVDTANELLHEMC 490

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
            +     +  +++ ++ L K  +   AV+L   M   GF+  P+ + Y  ++   C + +
Sbjct: 491 RKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFH--PDAVTYTTLMDAYCKSRE 548

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
           +        QM+     P  +T+N++      +  + + EK    M++    P      +
Sbjct: 549 MVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNS 608

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461
            I      +      EI+  +   G++P   + N L+ G      + +      +M+ + 
Sbjct: 609 LIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKG 668

Query: 462 ILIYEVTMHKLKKAFYNESRSM--RDIFDSLER 492
             +   + + L K FY   + +  R++F+ + R
Sbjct: 669 FNLTVSSYNALIKGFYKRKKFLEARELFEQMRR 701



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 82/379 (21%), Positives = 162/379 (42%), Gaps = 7/379 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++N++   L + GR  +    +  M+  G +  + +++++ + YC  G+    +   + M
Sbjct: 255 SYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVGELQRVLKLIEEM 314

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
            + G++ +    N ++  +C+              + + + PDG  +  L++G+ K GNV
Sbjct: 315 QIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNV 374

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
             A + F EM +R + +P+ +  Y   +  L +  +V EA K    M  +   P    ++
Sbjct: 375 SSAYRLFDEMQKR-KISPDFI-TYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYT 432

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +D   K      A  L + M+ +G  L PN++ Y A+   LC   +VD       +M 
Sbjct: 433 ALIDGYCKEGKMKEAFSLHNQMLQMG--LTPNIVTYTALADGLCKCGEVDTANELLHEMC 490

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G   +  TYN +   L K   + +  K   +M    + P  +   T +     + E  
Sbjct: 491 RKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMV 550

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 473
            A E+   +L+  + P   + N L+ G    G L D  +  + ML + I+    T + L 
Sbjct: 551 RAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLI 610

Query: 474 KAF--YNESRSMRDIFDSL 490
           K +   N  R+  +I+  +
Sbjct: 611 KQYCIRNNMRATTEIYRGM 629



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 138/332 (41%), Gaps = 9/332 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
            F   F     AG  DEA   FD M  +G+   V + N  +S +    +    AL+    
Sbjct: 184 VFDIFFQVLVEAGMLDEARKLFDKMLNYGLLISVDSCNLFISHLSEDLDGIKIALKVFVE 243

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
             ++ V  +  S+ I+     + G V EA++   +M  R    P+ V++Y T +    + 
Sbjct: 244 FPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELR-GCIPD-VISYSTVINGYCQV 301

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
            ++   LK +  M+ +   P    ++  + +L K      A ++   M+  G  + P+ +
Sbjct: 302 GELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEG--IAPDGV 359

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
           +Y  +I   C   +V + +R FD+M      PD +TY  +   L +  RV E +K FHEM
Sbjct: 360 IYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEM 419

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
           +    +P  +     I       + + A  + N +L+ G+ P   +   L  GL   G +
Sbjct: 420 VCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEV 479

Query: 448 SDVRRFAEEMLNR----RILIYEVTMHKLKKA 475
                   EM  +     I  Y   ++ L KA
Sbjct: 480 DTANELLHEMCRKGLELNIYTYNSLVNGLCKA 511



 Score = 47.0 bits (110), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 103/247 (41%), Gaps = 55/247 (22%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP----TFASIFDSYCGAGK 162
           +G  L+ Y +N +V+ L K G  +Q   AV++MK+  V        T+ ++ D+YC + +
Sbjct: 492 KGLELNIYTYNSLVNGLCKAGNIDQ---AVKLMKDMEVAGFHPDAVTYTTLMDAYCKSRE 548

Query: 163 YDEA---------------VMSFDVM----SMHGVEQD----------------VVAVNS 187
              A               V++F+V+     M G+ +D                    NS
Sbjct: 549 MVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNS 608

Query: 188 LLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER- 246
           L+   C + N  +    +     K V PDG+++ IL++G  K  N++EA     +MV + 
Sbjct: 609 LIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKG 668

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE---------NCFPTLKFFSNALD 297
           F      V +Y   +    + K+  EA +    M+ E         N F  + +    ++
Sbjct: 669 FNLT---VSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIFADINYDEGKME 725

Query: 298 ILVKLND 304
           + ++L D
Sbjct: 726 LTLELCD 732


>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 80/393 (20%), Positives = 170/393 (43%), Gaps = 15/393 (3%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G + +PY +N ++ +L K G+  +    +R M  +G+      + ++ D +C  G    
Sbjct: 217 KGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSS 276

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE----FLNRVKKIVDPDGDSFA 221
           A   FD M    +  D +   +++  +C    QT R +E    F   V K ++PD  ++ 
Sbjct: 277 AYRLFDEMQKRKISPDFITYTAVICGLC----QTGRVMEADKLFHEMVCKRLEPDEVTYT 332

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L++G+ KEG ++EA     +M++     P +++ Y      L +  +VD A + L  M 
Sbjct: 333 ALIDGYCKEGKMKEAFSLHNQMLQ-MGLTP-NIVTYTALADGLCKCGEVDTANELLHEMC 390

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
            +     +  +++ ++ L K  +   AV+L   M   GF+  P+ + Y  ++   C + +
Sbjct: 391 RKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFH--PDAVTYTTLMDAYCKSRE 448

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
           +        QM+     P  +T+N++      +  + + EK    M++    P      +
Sbjct: 449 MVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNS 508

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461
            I      +      EI+  +   G++P   + N L+ G      + +      +M+ + 
Sbjct: 509 LIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKG 568

Query: 462 ILIYEVTMHKLKKAFYNESRSM--RDIFDSLER 492
             +   + + L K FY   + +  R++F+ + R
Sbjct: 569 FNLTVSSYNALIKGFYKRKKFLEARELFEQMRR 601



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 134/320 (41%), Gaps = 6/320 (1%)

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M + G++ +    N ++  +C+              + + + PDG  +  L++G+ K GN
Sbjct: 214 MQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGN 273

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           V  A + F EM +R + +P+ +  Y   +  L +  +V EA K    M  +   P    +
Sbjct: 274 VSSAYRLFDEMQKR-KISPDFI-TYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTY 331

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  +D   K      A  L + M+ +G  L PN++ Y A+   LC   +VD       +M
Sbjct: 332 TALIDGYCKEGKMKEAFSLHNQMLQMG--LTPNIVTYTALADGLCKCGEVDTANELLHEM 389

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
              G   +  TYN +   L K   + +  K   +M    + P  +   T +     + E 
Sbjct: 390 CRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREM 449

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
             A E+   +L+  + P   + N L+ G    G L D  +  + ML + I+    T + L
Sbjct: 450 VRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSL 509

Query: 473 KKAF--YNESRSMRDIFDSL 490
            K +   N  R+  +I+  +
Sbjct: 510 IKQYCIRNNMRATTEIYRGM 529



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 79/187 (42%), Gaps = 2/187 (1%)

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
           LK +  M+ +   P    ++  + +L K      A ++   M+  G  + P+ ++Y  +I
Sbjct: 208 LKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEG--IAPDGVIYTTLI 265

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
              C   +V + +R FD+M      PD +TY  +   L +  RV E +K FHEM+    +
Sbjct: 266 DGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLE 325

Query: 394 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 453
           P  +     I       + + A  + N +L+ G+ P   +   L  GL   G +      
Sbjct: 326 PDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANEL 385

Query: 454 AEEMLNR 460
             EM  +
Sbjct: 386 LHEMCRK 392



 Score = 47.0 bits (110), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 103/247 (41%), Gaps = 55/247 (22%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP----TFASIFDSYCGAGK 162
           +G  L+ Y +N +V+ L K G  +Q   AV++MK+  V        T+ ++ D+YC + +
Sbjct: 392 KGLELNIYTYNSLVNGLCKAGNIDQ---AVKLMKDMEVAGFHPDAVTYTTLMDAYCKSRE 448

Query: 163 YDEA---------------VMSFDVM----SMHGVEQD----------------VVAVNS 187
              A               V++F+V+     M G+ +D                    NS
Sbjct: 449 MVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNS 508

Query: 188 LLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER- 246
           L+   C + N  +    +     K V PDG+++ IL++G  K  N++EA     +MV + 
Sbjct: 509 LIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKG 568

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE---------NCFPTLKFFSNALD 297
           F      V +Y   +    + K+  EA +    M+ E         N F  + +    ++
Sbjct: 569 FNLT---VSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIFADINYDEGKME 625

Query: 298 ILVKLND 304
           + ++L D
Sbjct: 626 LTLELCD 632


>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
 gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
          Length = 1041

 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 87/390 (22%), Positives = 174/390 (44%), Gaps = 13/390 (3%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDE 165
           +G +    A+  ++D   + G   + +     M   GV L+L T+ ++    C  G  ++
Sbjct: 335 KGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEK 394

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILL 224
           A    + M M G++ D    N+++    +++N TSR  + L+ +KK  + P   +  +++
Sbjct: 395 ADALLNEMIMVGIKPDTQTYNNMIEGYLKEQN-TSRVKDLLSEMKKSNLVPTAYTCGMII 453

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G  + G++E+A++ F E++      P  V+ Y T +   ++  +  EA++ L+VM  + 
Sbjct: 454 NGLCRHGSIEDASRVF-EIMVSLGVKPNAVI-YTTLIKGHVQEGRFQEAVRILKVMDKKG 511

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
             P +  +++ +  L K      A      M+  G  L PN+  Y A+I   C + ++  
Sbjct: 512 VQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERG--LKPNVYTYGALIHGYCKSGEMQV 569

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
             R+F +M+  G  P+ +    + +   K     E    F  M+     P     +  I 
Sbjct: 570 ADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIH 629

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR---- 460
            LL   + + A+E+ +  LE G++P   + N ++ G    G +    +  E M  +    
Sbjct: 630 GLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISP 689

Query: 461 RILIYEVTMHKLKKAFYNESRSMRDIFDSL 490
            I+ Y   ++ L KA   E    R++FD +
Sbjct: 690 NIITYNALINGLCKA--GEIERARELFDGI 717



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/395 (20%), Positives = 163/395 (41%), Gaps = 10/395 (2%)

Query: 56  ICEILAHASSDDIESALACTGIIPTPDLVHEVLQ--LSYDSPSSAVDFFRWAGRGQRL-S 112
           +C+      +D + + +   GI P     + +++  L   + S   D      +   + +
Sbjct: 386 VCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPT 445

Query: 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFD 171
            Y   ++++ L ++G  E       +M   GV  +   + ++   +   G++ EAV    
Sbjct: 446 AYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILK 505

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
           VM   GV+ DV+  NS++  +C+           +  +++ + P+  ++  L+ G+ K G
Sbjct: 506 VMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSG 565

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLI-TLIRGKQVDEALKFLRVMKGENCFPTLK 290
            ++ A++ F EM+      P  V+   T LI    +     EA    R M G +  P ++
Sbjct: 566 EMQVADRYFKEMLG-CGIAPNDVVC--TALIDGYCKEGSTTEATSIFRCMLGRSVHPDVR 622

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
            +S  +  L++      A++L    +  G  L+P++  YN++I   C    +   F+  +
Sbjct: 623 TYSALIHGLLRNGKLQGAMELLSEFLEKG--LVPDVFTYNSIISGFCKQGGIGKAFQLHE 680

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
            M   G  P+ +TYN +   L K   +    + F  +         +  AT I     + 
Sbjct: 681 YMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSG 740

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
               A  +++ +   G+ P     + L+ G R  G
Sbjct: 741 NLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEG 775



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 105/477 (22%), Positives = 186/477 (38%), Gaps = 76/477 (15%)

Query: 51  SSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA----G 106
           +++ I+ EI    +  + ES L       +PD+VH V+    + P   +DFF W     G
Sbjct: 37  NNSNIVNEITTFLNQKNWESLLPLVSNKLSPDVVHSVITKQVNDPKRLLDFFNWVQFQMG 96

Query: 107 RGQRLSPYAW------------------NLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP 148
             Q+L  ++                   N M+ ++   G  E + + ++  KE  + ++ 
Sbjct: 97  FSQKLQSFSILALILCNSRLFSRADSVVNQMI-MMSSGGYSEILDSLIKSCKEFDLNNVN 155

Query: 149 ------------TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
                        F  + D Y   G +DEAV  F     +G    ++  N LLS + +  
Sbjct: 156 GNENSNNNDRGVVFELLIDGYKKKGLFDEAVSFFLGAKRNGFVVGLLCCNGLLSDLLKA- 214

Query: 197 NQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
           N+      F N + +  V  D  ++  L+    + GN +E  +   EM E+   +P  ++
Sbjct: 215 NKLELFWRFYNGMLEANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEK-GCSPS-LV 272

Query: 256 AYETFLITLIRGKQVDEALKFLRVM--------------------KGENCF--------- 286
            Y   +  L R  +VDEA +  ++M                    K + C          
Sbjct: 273 TYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEM 332

Query: 287 ------PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
                 P    ++  +D  ++  DS  A ++ + M+  G  L  NL  YNA++  +C   
Sbjct: 333 FSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKL--NLFTYNALVKGVCKFG 390

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
           D++      ++M+  G  PD+ TYN + E  +K +    V+    EM K+   PT   C 
Sbjct: 391 DMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCG 450

Query: 401 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
             I  L      E A  ++  ++  G+ P       L+ G    GR  +  R  + M
Sbjct: 451 MIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVM 507



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 79/370 (21%), Positives = 155/370 (41%), Gaps = 5/370 (1%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +  +++   + G  ++    +  M+E G   SL T+  +    C AG+ DEA     +
Sbjct: 237 YTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEAFELKKL 296

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M   G+  DV   + L+    +Q+  T   L       K + P   ++  L++G+ ++G+
Sbjct: 297 MDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGD 356

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
             EA +   EM+ R      ++  Y   +  + +   +++A   L  M      P  + +
Sbjct: 357 SGEAFRVKEEMLAR--GVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTY 414

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +N ++  +K  +++    L   M     NL+P       +I  LC +  +++  R F+ M
Sbjct: 415 NNMIEGYLKEQNTSRVKDLLSEMKKS--NLVPTAYTCGMIINGLCRHGSIEDASRVFEIM 472

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
           V  G  P+++ Y  + +  ++  R  E  +    M K   QP  L   + I  L  + + 
Sbjct: 473 VSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKM 532

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
           E A +    ++E G+ P   +   L+ G    G +    R+ +EML   I   +V    L
Sbjct: 533 EEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTAL 592

Query: 473 KKAFYNESRS 482
              +  E  +
Sbjct: 593 IDGYCKEGST 602



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/361 (20%), Positives = 150/361 (41%), Gaps = 11/361 (3%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G     + +++++D  GK  R  +    +  M   G+      + ++ D +   G   E
Sbjct: 300 KGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGE 359

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILL 224
           A    + M   GV+ ++   N+L+  +C+  +   +A   LN +  + + PD  ++  ++
Sbjct: 360 AFRVKEEMLARGVKLNLFTYNALVKGVCKFGDM-EKADALLNEMIMVGIKPDTQTYNNMI 418

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT--LIRGKQVDEALKFLRVMKG 282
           EG+ KE N         EM ++    P    AY   +I   L R   +++A +   +M  
Sbjct: 419 EGYLKEQNTSRVKDLLSEM-KKSNLVPT---AYTCGMIINGLCRHGSIEDASRVFEIMVS 474

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
               P    ++  +   V+      AV++  +M   G  + P+++ YN+VI  LC +  +
Sbjct: 475 LGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKG--VQPDVLCYNSVIIGLCKSRKM 532

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
           +    +  +M+  G  P+  TY  +     K+  +   +++F EM+     P  + C   
Sbjct: 533 EEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTAL 592

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
           I           A  I+  +L   + P   + + L+ GL   G+L        E L + +
Sbjct: 593 IDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGL 652

Query: 463 L 463
           +
Sbjct: 653 V 653



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 141/326 (43%), Gaps = 8/326 (2%)

Query: 115  AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
             +N +++ L K G  E+       +   G+  +  T+A+I D YC +G   +A   FD M
Sbjct: 693  TYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEM 752

Query: 174  SMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAILLEGWEKEGN 232
            ++ GV  D    ++L+   CR+E  T +AL  FL  V+K       S   L++G+ K G 
Sbjct: 753  TLKGVPPDSFVYSALIDG-CRKEGNTEKALSLFLESVQKGF-ASTSSLNALMDGFCKSGK 810

Query: 233  VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
            V EAN+   +MV++    P+HV  Y   +    +   + EA +F   M+  N  P    +
Sbjct: 811  VIEANQLLEDMVDK-HVKPDHV-TYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTY 868

Query: 293  SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
            +  L         +    L+D M  I  ++ P+ + ++ +I       D     +  D M
Sbjct: 869  TALLSGYNMAGRRSEMFALFDEM--IAKDIEPDGVTWSVMIDAHLKEGDHVKTLKLVDDM 926

Query: 353  VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
            +  G        +++ + L + + V EV K   ++ +     +   C+T +     A + 
Sbjct: 927  LKKGGNVSKNVCHVLIDPLCRKEHVSEVLKVLEKIEEQGLNLSLATCSTLVRCFHKAGKM 986

Query: 413  EIAIEIWNYILENGILPLEASANELL 438
            + A  +   ++    +P     N+L+
Sbjct: 987  DGAARVLKSMVRFKWVPDSTELNDLI 1012



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 74/347 (21%), Positives = 148/347 (42%), Gaps = 8/347 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +N ++    K G   + +     M + G+  ++ T+ ++ +  C AG+ + A   FD 
Sbjct: 657 FTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDG 716

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEG 231
           +   G+  + V   +++   C+  N  S+A    + +  K V PD   ++ L++G  KEG
Sbjct: 717 IPGKGLAHNAVTYATIIDGYCKSGN-LSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEG 775

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           N E+A   F E V++   +   + A    +    +  +V EA + L  M  ++  P    
Sbjct: 776 NTEKALSLFLESVQKGFASTSSLNA---LMDGFCKSGKVIEANQLLEDMVDKHVKPDHVT 832

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           ++  +D   K      A Q +  M     NLMPN + Y A++           +F  FD+
Sbjct: 833 YTILIDYHCKTGFLKEAEQFFVDMQ--KRNLMPNALTYTALLSGYNMAGRRSEMFALFDE 890

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M+     PD +T++++ +  +K     +  K   +M+K     +   C   I  L   + 
Sbjct: 891 MIAKDIEPDGVTWSVMIDAHLKEGDHVKTLKLVDDMLKKGGNVSKNVCHVLIDPLCRKEH 950

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
               +++   I E G+    A+ + L+      G++    R  + M+
Sbjct: 951 VSEVLKVLEKIEEQGLNLSLATCSTLVRCFHKAGKMDGAARVLKSMV 997


>gi|168055632|ref|XP_001779828.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668740|gb|EDQ55341.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 730

 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 93/388 (23%), Positives = 162/388 (41%), Gaps = 10/388 (2%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G  L  YA+  ++  L +N +F++       MKE G   SL T+  I D Y   G+  E 
Sbjct: 112 GYPLDVYAYTSLISALSRNRKFKEALGFFEQMKEAGPQPSLVTYNVIIDLYGKKGRSWEN 171

Query: 167 VMS-FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILL 224
           ++  F+ M   G++ D    N+ ++A C   +    A E   ++K     PD  ++  LL
Sbjct: 172 ILELFEEMKAQGIQPDEYTYNTAITA-CASGSLCEEATELFTQMKSSNCTPDRVTYNALL 230

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           + + K G   EA     EM E     P +++ Y   L    R    + A +    M  + 
Sbjct: 231 DVYGKAGWYNEAANVLKEM-ESAGCLP-NIVTYNELLSAFGRAGLCNAAAEMKDSMVSKG 288

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
             P +  +++ L    +      A+++++ M     N  PN   +NA+IG+   N +   
Sbjct: 289 IEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTS--NCTPNSFTFNALIGMHGKNKNFSE 346

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
           +   F+ M   G  PD +T+N +     KN    EV K F  M K  ++P        I 
Sbjct: 347 MMVIFEDMQACGVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFNILIE 406

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 464
                   + A+ I++ +L+ G  P  A+ N LL  L   GR        +E+       
Sbjct: 407 AYGRCGSSDQALSIYDGMLQAGCTPDLATFNTLLAALAREGRWEHAELILDELNRSSYKP 466

Query: 465 YEVTMHKLKKAFYN--ESRSMRDIFDSL 490
            ++    +  A+ N  E   ++++ D+L
Sbjct: 467 NDIAYASMLHAYANGGELEKLKEMVDTL 494



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/342 (22%), Positives = 144/342 (42%), Gaps = 13/342 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           WN ++   GKNG + ++    R MK+ G      TF  + ++Y   G  D+A+  +D M 
Sbjct: 366 WNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFNILIEAYGRCGSSDQALSIYDGML 425

Query: 175 MHGVEQDVVAVNSLLSAICRQEN--QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
             G   D+   N+LL+A+ R+         L+ LNR      P+  ++A +L  +   G 
Sbjct: 426 QAGCTPDLATFNTLLAALAREGRWEHAELILDELNRSS--YKPNDIAYASMLHAYANGGE 483

Query: 233 VEEANKTFGEMVERFE--WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           +E+      EMV+     + P   +  +TF++   +   VDEA      M+         
Sbjct: 484 LEK----LKEMVDTLHTIYVPFTKILLKTFVLVYSKCSLVDEAEDAFLAMRHHGYLSDTS 539

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
            F+  + +  K      A   + ++   G  L P+++ YN ++G+               
Sbjct: 540 TFNAMISMYGKKGMMDKATDTFALLRSTG--LEPDVVTYNCLMGMYGREGMYRKCEATLR 597

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
           + +  G  PD ++YN +     K+ ++    + FHEM+ N  QP      T +   ++  
Sbjct: 598 ECMAAGQTPDLVSYNTVIFSYSKHGQLSSATRIFHEMVSNGIQPDSFTYNTFVGCYVNGG 657

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 452
               A+ +  ++ + G  P E +   L+     +G+  +V R
Sbjct: 658 MFPEALSVVKHMHKTGCKPDEVTYRTLVDAYCKIGKFEEVER 699



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 115/274 (41%), Gaps = 8/274 (2%)

Query: 187 SLLSAICRQENQTSRALEFLNRVKKIVD--PDGDSFAILLEGWEKEGNVEEANKTFGEMV 244
           S++  + R E Q ++ALE  N +++ V+  PDG + A++L    +E  +   ++ F  + 
Sbjct: 51  SIMKGLGR-EGQWNKALEVFNWMRQSVNFRPDGVTIAVMLRILGRESQLTTVSRLFKSLR 109

Query: 245 ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 304
           E  E  P  V AY + +  L R ++  EAL F   MK     P+L  ++  +D+  K   
Sbjct: 110 E--EGYPLDVYAYTSLISALSRNRKFKEALGFFEQMKEAGPQPSLVTYNVIIDLYGKKGR 167

Query: 305 S-THAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLT 363
           S  + ++L++ M   G  + P+   YN  I    +    +     F QM      PD +T
Sbjct: 168 SWENILELFEEMKAQG--IQPDEYTYNTAITACASGSLCEEATELFTQMKSSNCTPDRVT 225

Query: 364 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 423
           YN + +   K    +E      EM      P  +     ++    A     A E+ + ++
Sbjct: 226 YNALLDVYGKAGWYNEAANVLKEMESAGCLPNIVTYNELLSAFGRAGLCNAAAEMKDSMV 285

Query: 424 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
             GI P   +   LL      G++        +M
Sbjct: 286 SKGIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQM 319


>gi|449531171|ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 761

 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 86/389 (22%), Positives = 167/389 (42%), Gaps = 19/389 (4%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
           ++++D+L K G+  +    + V+ + G +  + T  ++    C   +  +A   F  M  
Sbjct: 376 SVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKGLCMKHRISKATQLFLKMQK 435

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD-------SFAILLEGWE 228
            G   +VV   +L+  +C Q      ALE    +     P G        S++I+++G  
Sbjct: 436 LGCMPNVVTCATLMKGLC-QSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLC 494

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           K G  +EA + F EM +     P+ V++Y + +    R  +  +A      M      P 
Sbjct: 495 KCGREDEARELFKEM-KALGVIPD-VISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPD 552

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
           +  FS  +D+L K      A +L ++M+  G   +PN + Y  ++  LC ND +    + 
Sbjct: 553 VTTFSVLIDMLCKEGKVIEANELLEVMIQRG--CIPNTVTYTTLVKGLCMNDRISEATQL 610

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ------PTPLNCATA 402
           F +M   G  PD +TY  + + L +   +    +   +M+ +  Q      P  ++ +  
Sbjct: 611 FMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSII 670

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
           I  L      + A E++  +   G++P   S   L+ G    G+L D +    EM+++ +
Sbjct: 671 IDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGV 730

Query: 463 LIYEVTMHKLKKAFYNESRSMRDIFDSLE 491
            +  VT   +   F  E +  + +F  +E
Sbjct: 731 QLNAVTYSVMIHGFCKEGQIDKALFQKME 759



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 88/387 (22%), Positives = 151/387 (39%), Gaps = 13/387 (3%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED----GVLSLPTFAS---I 153
           F      G R    A+  ++  L + G+     +  + M  D    G+   PT  S   I
Sbjct: 68  FMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPTLVSYSII 127

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV 213
            D  C   + DEA   F  M   G+  DV++  SL+   CR          F   +   +
Sbjct: 128 IDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEMLDVGI 187

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
             D  + ++L++   KEG V EAN+    M++R       ++ Y T +  L    ++ EA
Sbjct: 188 RSDVTTSSMLIDILCKEGKVIEANELLEVMIQR--GCILDIVTYSTLIKGLCMKHRISEA 245

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG----IGFNLMPNLIMY 329
            +    M+   C P    +   +  L +  +   A+QL   M+      G    P LI Y
Sbjct: 246 TRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYGIKCKPTLISY 305

Query: 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389
           + +I  LC +   D     F +M   G  PD ++Y  +      + +  + +  F+EM+ 
Sbjct: 306 SIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLD 365

Query: 390 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 449
              QP     +  I ML    +   A ++   +++ G +P   +   L+ GL    R+S 
Sbjct: 366 VGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKGLCMKHRISK 425

Query: 450 VRRFAEEMLNRRILIYEVTMHKLKKAF 476
             +   +M     +   VT   L K  
Sbjct: 426 ATQLFLKMQKLGCMPNVVTCATLMKGL 452



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 82/367 (22%), Positives = 173/367 (47%), Gaps = 18/367 (4%)

Query: 105 AGR-GQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGA 160
            GR G +  P   ++++++D L K+ R ++     + MK  G++  + ++ ++   +C +
Sbjct: 291 TGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIHGFCLS 350

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN--QTSRALEFLNRVKKIVDPDGD 218
           GK+++A   F+ M   G++ DV   + L+  +C++    + ++ LE +  +++   PD  
Sbjct: 351 GKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVV--IQRGCIPDVV 408

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           +   L++G   +  + +A + F +M ++    P +V+   T +  L +   +  AL+  +
Sbjct: 409 TCTTLVKGLCMKHRISKATQLFLKM-QKLGCMP-NVVTCATLMKGLCQSGNIKIALELHK 466

Query: 279 VM------KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAV 332
            M       G NC P    +S  +D L K      A +L+  M  +G  ++P++I Y ++
Sbjct: 467 NMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALG--VIPDVISYTSL 524

Query: 333 IGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 392
           I   C +    +    F++MV  G  PD  T++++ + L K  +V E  +    MI+   
Sbjct: 525 IHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGC 584

Query: 393 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 452
            P  +   T +  L   D    A +++  + + G LP   +   L+ GL   G +     
Sbjct: 585 IPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALE 644

Query: 453 FAEEMLN 459
             ++ML+
Sbjct: 645 LHKKMLS 651



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 88/387 (22%), Positives = 153/387 (39%), Gaps = 13/387 (3%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED----GVLSLPTFAS---I 153
           F      G R    A+  ++  L + G         + M  D    G+   PT  S   I
Sbjct: 249 FMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYGIKCKPTLISYSII 308

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV 213
            D  C   + DEA   F  M   G+  DV++  +L+   C           F   +   +
Sbjct: 309 IDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGI 368

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
            PD  + ++L++   K+G V EANK    +++R    P+ V+   T +  L    ++ +A
Sbjct: 369 QPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQR-GCIPD-VVTCTTLVKGLCMKHRISKA 426

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG----IGFNLMPNLIMY 329
            +    M+   C P +   +  +  L +  +   A++L   M+      G N  PN I Y
Sbjct: 427 TQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISY 486

Query: 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389
           + +I  LC     D     F +M   G  PD ++Y  +     ++ +  + +  F+EM+ 
Sbjct: 487 SIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVD 546

Query: 390 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 449
              QP     +  I ML    +   A E+   +++ G +P   +   L+ GL    R+S+
Sbjct: 547 IGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISE 606

Query: 450 VRRFAEEMLNRRILIYEVTMHKLKKAF 476
             +   +M     L   VT   L K  
Sbjct: 607 ATQLFMKMQKLGCLPDVVTYGTLMKGL 633



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 75/363 (20%), Positives = 147/363 (40%), Gaps = 51/363 (14%)

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206
           + T   + D +C  GK  EA    +VM   G   D+V  ++L+  +C  +++ S A +  
Sbjct: 10  VTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLC-MKHRISEATQLF 68

Query: 207 NRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE-----RFEWNPEHVLAYETF 260
             +KK+   PD  ++  L++G  + G +  A     EM+        +  P  +++Y   
Sbjct: 69  MSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPT-LVSYSII 127

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN-------------------------- 294
           +  L + ++ DEA +  + MK +   P +  +++                          
Sbjct: 128 IDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEMLDVGI 187

Query: 295 ---------ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
                     +DIL K      A +L ++M+  G  L  +++ Y+ +I  LC    +   
Sbjct: 188 RSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCIL--DIVTYSTLIKGLCMKHRISEA 245

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN------EWQPTPLNC 399
            R F  M   G  PD++ Y  + + L +   ++   +   EM+ +      + +PT ++ 
Sbjct: 246 TRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYGIKCKPTLISY 305

Query: 400 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
           +  I  L      + A E++  +   GI+P   S   L+ G    G+    +    EML+
Sbjct: 306 SIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLD 365

Query: 460 RRI 462
             I
Sbjct: 366 VGI 368



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/245 (22%), Positives = 102/245 (41%), Gaps = 6/245 (2%)

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
           + PD  +  +L++ + KEG V EAN+    MV+R       ++ Y T +  L    ++ E
Sbjct: 6   IQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQR--GCILDIVTYSTLIKGLCMKHRISE 63

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG----IGFNLMPNLIM 328
           A +    MK   C P    +   +  L +      A+ L   M+      G    P L+ 
Sbjct: 64  ATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPTLVS 123

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           Y+ +I  LC +   D     F +M   G  PD ++Y  +     ++ +  + +  F+EM+
Sbjct: 124 YSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEML 183

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
               +      +  I +L    +   A E+   +++ G +    + + L+ GL    R+S
Sbjct: 184 DVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKHRIS 243

Query: 449 DVRRF 453
           +  R 
Sbjct: 244 EATRL 248



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 52/90 (57%), Gaps = 2/90 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++++++D L K+GR ++     + MK  GV+ ++ ++ S+   +C +GK ++A   F+ M
Sbjct: 666 SYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEM 725

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRAL 203
              GV+ + V  + ++   C+ E Q  +AL
Sbjct: 726 VDQGVQLNAVTYSVMIHGFCK-EGQIDKAL 754


>gi|357127305|ref|XP_003565323.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Brachypodium distachyon]
          Length = 746

 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 82/351 (23%), Positives = 152/351 (43%), Gaps = 11/351 (3%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T++++  +   AG+ D+AV     M + GV     A N +L A+ R  + T  A  F   
Sbjct: 316 TYSTVVSALADAGRVDDAVALVHEMVVDGVVA-AEAFNPVLGAMLRTGDVTGAAKLFSFM 374

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
             K   P   ++ +LL G    G  + A      M ER E  P  V+ Y   +  L+R  
Sbjct: 375 QLKGCAPSAATYNVLLHGLLLCGRAKAAMGVMRRM-ERAEVVPG-VMTYGAVVDGLVRCG 432

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           ++++A K +  M+ +   P    FS  +    KL +   A ++WD MV  G    PN+++
Sbjct: 433 RLEDACKVIEEMRSKGLVPNEFVFSPVITGFCKLGEVDRASRVWDTMVAAGIK--PNVVL 490

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           Y+A+I  L     +      F +M+     P+ +TY+ +     +     +   F+ +M+
Sbjct: 491 YSAMIDGLARCGKMTEAELLFREMIEAKCVPNIMTYSSMVRGYFQIGDSSQALSFWEDML 550

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
           +    P  +  +  I  L +    + A+ +W ++L  G +P   +   ++ G    G + 
Sbjct: 551 RIGCTPNAVTYSVLINGLCNVGRSKDAMMVWKHMLGRGCVPDTIAYTSMIKGFCVSGMVD 610

Query: 449 DVRRFAEEMLNRR-----ILIYEVTMHKLKKAFYNESRSMRDIFDSLERRC 494
              R   +ML R      ++ Y V +  L +A  +  R+M  +   L++ C
Sbjct: 611 AGLRLFYDMLARGDTHPDVICYNVLLDGLLRA-KDLPRAMDLLNQMLDQAC 660



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/299 (21%), Positives = 136/299 (45%), Gaps = 10/299 (3%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSYCGAGKYDE 165
           +G   S   +N+++  L   GR +     +R M + + V  + T+ ++ D     G+ ++
Sbjct: 377 KGCAPSAATYNVLLHGLLLCGRAKAAMGVMRRMERAEVVPGVMTYGAVVDGLVRCGRLED 436

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICR--QENQTSRALEFLNRVKKIVDPDGDSFAIL 223
           A    + M   G+  +    + +++  C+  + ++ SR  + +  V   + P+   ++ +
Sbjct: 437 ACKVIEEMRSKGLVPNEFVFSPVITGFCKLGEVDRASRVWDTM--VAAGIKPNVVLYSAM 494

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           ++G  + G + EA   F EM+E  +  P +++ Y + +    +     +AL F   M   
Sbjct: 495 IDGLARCGKMTEAELLFREMIEA-KCVP-NIMTYSSMVRGYFQIGDSSQALSFWEDMLRI 552

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
            C P    +S  ++ L  +  S  A+ +W  M+G G   +P+ I Y ++I   C +  VD
Sbjct: 553 GCTPNAVTYSVLINGLCNVGRSKDAMMVWKHMLGRG--CVPDTIAYTSMIKGFCVSGMVD 610

Query: 344 NVFRFFDQMVFHG-AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
              R F  M+  G   PD + YN++ + L++ K +       ++M+     P  + C T
Sbjct: 611 AGLRLFYDMLARGDTHPDVICYNVLLDGLLRAKDLPRAMDLLNQMLDQACDPDTVTCNT 669


>gi|357129487|ref|XP_003566393.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial-like [Brachypodium distachyon]
          Length = 837

 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 95/404 (23%), Positives = 168/404 (41%), Gaps = 36/404 (8%)

Query: 98  AVDFFRWA---------GR----GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG- 143
           AV F +W          GR    G R S    +++V    K  R ++       M   G 
Sbjct: 252 AVAFSKWGKVDGAVELLGRMELLGMRPSEKTLSVLVHGFAKQLRLDKAMEMFDKMGSYGF 311

Query: 144 VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRAL 203
           V  LP ++ + +  C   +  +AV  F+ M    V  D   +  +L A CR+ +     L
Sbjct: 312 VAGLPMYSVLIEGLCQKKEIGKAVKLFEEMKRGEVAPDARLLKKMLEAFCREGDFAIAGL 371

Query: 204 EFLNRVKKIVDPDG--DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE------HVL 255
            F+N   + + P G    F ++LEG+   G  E A +    M+   +   +      HV+
Sbjct: 372 -FINENARQLKPSGVIALFNVVLEGFVNHGQAEAAYQLLTSMIRGGQGISDGVTVGAHVV 430

Query: 256 -----------AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 304
                      ++   +  L + K++D AL  ++ M G  C   L  F++ +  L  L+ 
Sbjct: 431 DISEDVKPNSDSFNIVVCGLCKVKKLDNALALIKDMTGIGCKGKLLMFNDLIHELCSLDR 490

Query: 305 STHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTY 364
                +++++M  +G  L+P+   YN++   +C   D +        M  +G  P     
Sbjct: 491 LDEGYKMFNLMKNLG--LIPSEFTYNSLFYGICRRKDPNCALDLLRDMRTNGHRPWIKNC 548

Query: 365 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 424
             + + L  + R+ E  +F  EM+K  + P  +  + A+  L    E + A+ I+  I  
Sbjct: 549 TEMVQQLCISGRITEALQFLDEMLKMGFLPDIVTYSAAMNGLCKTGEVDNALGIFRDISS 608

Query: 425 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 468
              LP   + N L+ G R  G+LS+ +   EEML + +    VT
Sbjct: 609 KYYLPDVVAHNILINGFRISGKLSEAQEVMEEMLEKGLFPSIVT 652



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 98/239 (41%), Gaps = 37/239 (15%)

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
           Y +    + R K  + AL  LR M+     P +K  +  +  L      T A+Q  D M+
Sbjct: 513 YNSLFYGICRRKDPNCALDLLRDMRTNGHRPWIKNCTEMVQQLCISGRITEALQFLDEML 572

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF--------------------------- 349
            +GF  +P+++ Y+A +  LC   +VDN    F                           
Sbjct: 573 KMGF--LPDIVTYSAAMNGLCKTGEVDNALGIFRDISSKYYLPDVVAHNILINGFRISGK 630

Query: 350 --------DQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
                   ++M+  G FP  +TYN++ +   K+  + +     ++MI  E  PT +   +
Sbjct: 631 LSEAQEVMEEMLEKGLFPSIVTYNLMIDVWCKSGNIEKAIACLNKMIDEEESPTVVTYTS 690

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
            I  L     P+ AI +W+ +++ G  P + +    + GL    R+     + EEM+ +
Sbjct: 691 LIDGLCSTGRPDEAIALWHKMMDKGCAPNKIAYTAFVNGLCKRARVDTALTYYEEMMTK 749



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 94/444 (21%), Positives = 168/444 (37%), Gaps = 69/444 (15%)

Query: 95  PSSAVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRF---EQMWNAVRVMKEDGVLSLPT 149
           P +A+  F  A      +P  Y +N ++D L K GR    E     + V   D  +   T
Sbjct: 154 PDAALLVFDGARTCLSCTPNSYTFNCLLDTLAKAGRADDAEARLQEMVVRCGDESVDKYT 213

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHG-VEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
             S+   YC AG+ D+A   F+ MS  G V++ V+   ++L+    +  +   A+E L R
Sbjct: 214 LTSLLQCYCNAGRPDDANGVFERMSQRGWVDEHVL---TILAVAFSKWGKVDGAVELLGR 270

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           ++ + + P   + ++L+ G+ K+  +++A + F +M          +  Y   +  L + 
Sbjct: 271 MELLGMRPSEKTLSVLVHGFAKQLRLDKAMEMFDKMGSY--GFVAGLPMYSVLIEGLCQK 328

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND----------------------- 304
           K++ +A+K    MK     P  +     L+   +  D                       
Sbjct: 329 KEIGKAVKLFEEMKRGEVAPDARLLKKMLEAFCREGDFAIAGLFINENARQLKPSGVIAL 388

Query: 305 -------------STHAVQLWDIM-----------------VGIGFNLMPNLIMYNAVIG 334
                        +  A QL   M                 V I  ++ PN   +N V+ 
Sbjct: 389 FNVVLEGFVNHGQAEAAYQLLTSMIRGGQGISDGVTVGAHVVDISEDVKPNSDSFNIVVC 448

Query: 335 LLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
            LC    +DN       M   G     L +N +   L    R+ E  K F+ M      P
Sbjct: 449 GLCKVKKLDNALALIKDMTGIGCKGKLLMFNDLIHELCSLDRLDEGYKMFNLMKNLGLIP 508

Query: 395 TPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 454
           +     +    +    +P  A+++   +  NG  P   +  E++  L   GR+++  +F 
Sbjct: 509 SEFTYNSLFYGICRRKDPNCALDLLRDMRTNGHRPWIKNCTEMVQQLCISGRITEALQFL 568

Query: 455 EEMLNRR----ILIYEVTMHKLKK 474
           +EML       I+ Y   M+ L K
Sbjct: 569 DEMLKMGFLPDIVTYSAAMNGLCK 592



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 101/234 (43%), Gaps = 4/234 (1%)

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG 217
           C +G+  EA+   D M   G   D+V  ++ ++ +C+     +    F +   K   PD 
Sbjct: 556 CISGRITEALQFLDEMLKMGFLPDIVTYSAAMNGLCKTGEVDNALGIFRDISSKYYLPDV 615

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            +  IL+ G+   G + EA +   EM+E+  +    ++ Y   +    +   +++A+  L
Sbjct: 616 VAHNILINGFRISGKLSEAQEVMEEMLEKGLF--PSIVTYNLMIDVWCKSGNIEKAIACL 673

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337
             M  E   PT+  +++ +D L        A+ LW  M+  G    PN I Y A +  LC
Sbjct: 674 NKMIDEEESPTVVTYTSLIDGLCSTGRPDEAIALWHKMMDKG--CAPNKIAYTAFVNGLC 731

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
               VD    ++++M+  G   D+ +       LI      +  +   E+++ +
Sbjct: 732 KRARVDTALTYYEEMMTKGFELDTFSCLYFINFLISTGNATKGCELLKEVLQKD 785



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 64/317 (20%), Positives = 132/317 (41%), Gaps = 13/317 (4%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++N++V  L K  + +     ++ M   G    L  F  +    C   + DE    F++M
Sbjct: 442 SFNIVVCGLCKVKKLDNALALIKDMTGIGCKGKLLMFNDLIHELCSLDRLDEGYKMFNLM 501

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD-PDGDSFAILLEGWEKEGN 232
              G+       NSL   ICR+++    AL+ L  ++     P   +   +++     G 
Sbjct: 502 KNLGLIPSEFTYNSLFYGICRRKDPNC-ALDLLRDMRTNGHRPWIKNCTEMVQQLCISGR 560

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL--- 289
           + EA +   EM+ +  + P+ ++ Y   +  L +  +VD AL   R +  +   P +   
Sbjct: 561 ITEALQFLDEML-KMGFLPD-IVTYSAAMNGLCKTGEVDNALGIFRDISSKYYLPDVVAH 618

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
               N   I  KL++   A ++ + M+  G  L P+++ YN +I + C + +++      
Sbjct: 619 NILINGFRISGKLSE---AQEVMEEMLEKG--LFPSIVTYNLMIDVWCKSGNIEKAIACL 673

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 409
           ++M+     P  +TY  + + L    R  E    +H+M+     P  +     +  L   
Sbjct: 674 NKMIDEEESPTVVTYTSLIDGLCSTGRPDEAIALWHKMMDKGCAPNKIAYTAFVNGLCKR 733

Query: 410 DEPEIAIEIWNYILENG 426
              + A+  +  ++  G
Sbjct: 734 ARVDTALTYYEEMMTKG 750



 Score = 43.5 bits (101), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSF 170
           S   +NLM+DV  K+G  E+    + +++ E+   ++ T+ S+ D  C  G+ DEA+  +
Sbjct: 649 SIVTYNLMIDVWCKSGNIEKAIACLNKMIDEEESPTVVTYTSLIDGLCSTGRPDEAIALW 708

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQ 195
             M   G   + +A  + ++ +C++
Sbjct: 709 HKMMDKGCAPNKIAYTAFVNGLCKR 733


>gi|356520989|ref|XP_003529141.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Glycine max]
          Length = 682

 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 105/438 (23%), Positives = 183/438 (41%), Gaps = 85/438 (19%)

Query: 112 SPYAWNLMVDVLGKNGRFEQ---MWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVM 168
           S  ++N+M+  L K GRF +   +W   R+ K +    L T++++      AG    A  
Sbjct: 253 SVVSYNVMISGLCKCGRFSEGLEIWE--RMKKNERKCDLFTYSALIHGLSEAGDLGGARK 310

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
            ++ M   GV  DVV  N++L+ +C+  N      E    + K    +  S+ I L+G  
Sbjct: 311 VYEEMVGRGVRPDVVTCNAMLNGLCKAGN-VEECFELWEEMGKCSLRNVRSYNIFLKGLF 369

Query: 229 KEGNVEEA-----------NKTFGEMVERFEWN------------PEHV--------LAY 257
           + G V++A           + T+G +V    WN             EH          AY
Sbjct: 370 ENGKVDDAMMLWDGLLEADSATYGVVVHGLCWNGYVNRALQVLEEAEHREGGMDVDEFAY 429

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL----VKLNDSTHAVQLWD 313
            + +  L +  ++DEA   + +M    C    KF S+  ++L    VK +    AV+++ 
Sbjct: 430 SSLINALCKEGRLDEADGVVELMNKRGC----KFNSHVCNVLIDGFVKHSKLDSAVKVFR 485

Query: 314 IMVGIGFNLM---------------------------------PNLIMYNAVIGLLCNND 340
            M G G +L                                  P++I Y+ +IG L  ++
Sbjct: 486 EMSGKGCSLTVVSYNILINGLLRAERFREAYDCVNEMLEKGWKPDIITYSTLIGGLYESN 545

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
            +D   R + Q +  G  PD + YN++   L  + +V +  + +  +     Q   +N  
Sbjct: 546 MMDAALRLWHQFLDTGHKPDIIMYNIVIHRLCSSGKVEDALQLYSTLR----QKKCVNLV 601

Query: 401 TAITML---LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           T  T++         E+A +IW +ILE+ + P   S N  L GL + GR++D   F ++ 
Sbjct: 602 THNTIMEGFYKVGNCEMASKIWAHILEDELQPDIISYNITLKGLCSCGRVTDAVGFLDDA 661

Query: 458 LNRRILIYEVTMHKLKKA 475
           L R  L   +T + L +A
Sbjct: 662 LVRGFLPTAITWNILVRA 679



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/267 (21%), Positives = 125/267 (46%), Gaps = 8/267 (2%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEA 166
           G  +  +A++ +++ L K GR ++    V +M + G   +      + D +    K D A
Sbjct: 421 GMDVDEFAYSSLINALCKEGRLDEADGVVELMNKRGCKFNSHVCNVLIDGFVKHSKLDSA 480

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLE 225
           V  F  MS  G    VV+ N L++ + R E +   A + +N  ++K   PD  +++ L+ 
Sbjct: 481 VKVFREMSGKGCSLTVVSYNILINGLLRAE-RFREAYDCVNEMLEKGWKPDIITYSTLIG 539

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G  +   ++ A + + + ++     P+ ++ Y   +  L    +V++AL+    ++ + C
Sbjct: 540 GLYESNMMDAALRLWHQFLDTGH-KPD-IIMYNIVIHRLCSSGKVEDALQLYSTLRQKKC 597

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
              L   +  ++   K+ +   A ++W  +  +   L P++I YN  +  LC+   V + 
Sbjct: 598 V-NLVTHNTIMEGFYKVGNCEMASKIWAHI--LEDELQPDIISYNITLKGLCSCGRVTDA 654

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLI 372
             F D  +  G  P ++T+N++   +I
Sbjct: 655 VGFLDDALVRGFLPTAITWNILVRAVI 681



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 100/241 (41%), Gaps = 4/241 (1%)

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           LL+ + K     EA   F  M   F  +P  + ++ T L   +   Q   A  F +  + 
Sbjct: 83  LLKAYAKTRMPNEALHVFQTMPHVFGCSPT-IRSFNTLLNAFVESHQWARAENFFKYFEA 141

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
               P ++ ++  + ++ K  +      L   M G G +  P+ I Y  +IG +  + D+
Sbjct: 142 ARVSPNVETYNVLMKVMCKKGEFEKGRGLLTWMWGAGMS--PDRITYGTLIGGVAKSGDL 199

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ-PTPLNCAT 401
                 FD+M   G  PD + YNMI +   K     +  + +  +++ E   P+ ++   
Sbjct: 200 GFALEVFDEMRERGVEPDVVCYNMIIDGFFKRGDFVKAGEMWERLLREELVFPSVVSYNV 259

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461
            I+ L         +EIW  + +N       + + L+ GL   G L   R+  EEM+ R 
Sbjct: 260 MISGLCKCGRFSEGLEIWERMKKNERKCDLFTYSALIHGLSEAGDLGGARKVYEEMVGRG 319

Query: 462 I 462
           +
Sbjct: 320 V 320



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 99/458 (21%), Positives = 177/458 (38%), Gaps = 92/458 (20%)

Query: 96  SSAVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQ-------MWNAVRVMKEDGVLS 146
           + A +FF++     R+SP    +N+++ V+ K G FE+       MW A   M  D +  
Sbjct: 130 ARAENFFKYF-EAARVSPNVETYNVLMKVMCKKGEFEKGRGLLTWMWGAG--MSPDRI-- 184

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD------------------------- 181
             T+ ++      +G    A+  FD M   GVE D                         
Sbjct: 185 --TYGTLIGGVAKSGDLGFALEVFDEMRERGVEPDVVCYNMIIDGFFKRGDFVKAGEMWE 242

Query: 182 -----------VVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEK 229
                      VV+ N ++S +C+   + S  LE   R+KK     D  +++ L+ G  +
Sbjct: 243 RLLREELVFPSVVSYNVMISGLCKC-GRFSEGLEIWERMKKNERKCDLFTYSALIHGLSE 301

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
            G++  A K + EMV R    P+ V+     L  L +   V+E  +    M G+     +
Sbjct: 302 AGDLGGARKVYEEMVGR-GVRPD-VVTCNAMLNGLCKAGNVEECFELWEEM-GKCSLRNV 358

Query: 290 KFFSNALDILVKLNDSTHAVQLWD------------IMVGIGFNLMPNLIM--------- 328
           + ++  L  L +      A+ LWD            ++ G+ +N   N  +         
Sbjct: 359 RSYNIFLKGLFENGKVDDAMMLWDGLLEADSATYGVVVHGLCWNGYVNRALQVLEEAEHR 418

Query: 329 ----------YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVH 378
                     Y+++I  LC    +D      + M   G   +S   N++ +  +K+ ++ 
Sbjct: 419 EGGMDVDEFAYSSLINALCKEGRLDEADGVVELMNKRGCKFNSHVCNVLIDGFVKHSKLD 478

Query: 379 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 438
              K F EM       T ++    I  LL A+    A +  N +LE G  P   + + L+
Sbjct: 479 SAVKVFREMSGKGCSLTVVSYNILINGLLRAERFREAYDCVNEMLEKGWKPDIITYSTLI 538

Query: 439 VGLRNLGRLSDVRRFAEEMLNRR----ILIYEVTMHKL 472
            GL     +    R   + L+      I++Y + +H+L
Sbjct: 539 GGLYESNMMDAALRLWHQFLDTGHKPDIIMYNIVIHRL 576



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 92/183 (50%), Gaps = 5/183 (2%)

Query: 97  SAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           SAV  FR  +G+G  L+  ++N++++ L +  RF + ++ V  M E G    + T++++ 
Sbjct: 479 SAVKVFREMSGKGCSLTVVSYNILINGLLRAERFREAYDCVNEMLEKGWKPDIITYSTLI 538

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD 214
                +   D A+  +      G + D++  N ++  +C    +   AL+  + +++   
Sbjct: 539 GGLYESNMMDAALRLWHQFLDTGHKPDIIMYNIVIHRLC-SSGKVEDALQLYSTLRQKKC 597

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
            +  +   ++EG+ K GN E A+K +  ++E  E  P+ +++Y   L  L    +V +A+
Sbjct: 598 VNLVTHNTIMEGFYKVGNCEMASKIWAHILED-ELQPD-IISYNITLKGLCSCGRVTDAV 655

Query: 275 KFL 277
            FL
Sbjct: 656 GFL 658


>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 153/350 (43%), Gaps = 7/350 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           + +++  L  +GR  +  N    MKE G   ++ T+  + D  C   K DEA      MS
Sbjct: 302 YTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMS 361

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNV 233
             G+   VV  N+L+   C+ E     A E L+ ++     P+  ++  L+ G  K+  V
Sbjct: 362 EKGLIPSVVTYNALIDGYCK-EGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKV 420

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            +A     +M+ER + +P  ++ Y + +    +   ++ A + L +M      P    +S
Sbjct: 421 HKAMALLNKMLER-KLSPS-LITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYS 478

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +D L K      A  L+D +   G     N ++Y A+I   C    +D  +   ++M+
Sbjct: 479 VFIDTLCKEGRVEEAGTLFDSVKAKGVK--ANEVIYTALIDGYCKVGKIDVAYSLLERML 536

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
                P+S TYN++ E L K K++ E      +M+    +PT +     I  +L     +
Sbjct: 537 NDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFD 596

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
            A++++N+++  G  P   +    L    + G L +V     +M    IL
Sbjct: 597 HALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGIL 646



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 126/281 (44%), Gaps = 4/281 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF ++ + YC  G   EA +    +   G+  D     SL+   CR +   +    FL  
Sbjct: 196 TFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIM 255

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
            +K    +  S+  L+ G  + G + EA K F +M E     P  V  Y   +  L    
Sbjct: 256 PQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTED-NCCPT-VRTYTVLIYALSGSG 313

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           +  EAL     MK + C P +  ++  +D L K N    A ++   M   G  L+P+++ 
Sbjct: 314 RKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKG--LIPSVVT 371

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           YNA+I   C    +D+ F   D M  +   P++ TYN +   L K ++VH+     ++M+
Sbjct: 372 YNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKML 431

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
           + +  P+ +   + I      ++ E A  + + + ENG++P
Sbjct: 432 ERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVP 472



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 80/364 (21%), Positives = 141/364 (38%), Gaps = 46/364 (12%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT-FASIFDSYCGAGKYDEAVMSFDV 172
           + +++ +D L K GR E+       +K  GV +    + ++ D YC  GK D A    + 
Sbjct: 475 WTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLER 534

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M       +    N L+  +C+++     +      +   V P   ++ IL+    K+G 
Sbjct: 535 MLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGA 594

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
            + A K F  MV    + P+ V  Y  FL        ++E    +  M  E   P L  +
Sbjct: 595 FDHALKVFNHMVS-LGYQPD-VCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTY 652

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN------------D 340
           +  +D   +L  +  A      MV  G    P+L + + +I  L +             D
Sbjct: 653 TVLIDGYARLGLTHRAFDFLKCMVDTGCK--PSLYIVSILIKNLSHENRMKETRSEIGID 710

Query: 341 DVDNV-----------------FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
            V NV                  + F++MV HG   D   Y  +     + +R+ E +  
Sbjct: 711 SVSNVNSVDIADVWKTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGL 770

Query: 384 FHEMIKNEWQPTP------LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 437
            H M +    P+       L+C   + +  +      A+ + + ++ENG+LPL  S   L
Sbjct: 771 VHHMKERGMSPSEDIYNSLLDCCCKLGVYAE------AVRLVDAMVENGLLPLLESYKLL 824

Query: 438 LVGL 441
           + GL
Sbjct: 825 VCGL 828



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 82/376 (21%), Positives = 148/376 (39%), Gaps = 9/376 (2%)

Query: 110 RLSP--YAWNLMVDVLGKNGRF-EQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           ++SP  Y +N MV+   K G   E    A ++++        T+ S+   +C     D A
Sbjct: 189 QISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNA 248

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAILLE 225
              F +M   G +++ V+  +L+  +C +  + + AL+ F +  +    P   ++ +L+ 
Sbjct: 249 YEVFLIMPQKGCQRNEVSYTNLIHGLC-EAGRINEALKLFADMTEDNCCPTVRTYTVLIY 307

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
                G   EA   F EM E+      +V  Y   +  L +  ++DEA K L  M  +  
Sbjct: 308 ALSGSGRKVEALNLFNEMKEK--GCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGL 365

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P++  ++  +D   K      A ++ D+M        PN   YN +I  LC    V   
Sbjct: 366 IPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCG--PNTRTYNELICGLCKKRKVHKA 423

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
               ++M+     P  +TYN +     K   +    +    M +N   P     +  I  
Sbjct: 424 MALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDT 483

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 465
           L      E A  +++ +   G+   E     L+ G   +G++       E MLN   L  
Sbjct: 484 LCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPN 543

Query: 466 EVTMHKLKKAFYNESR 481
             T + L +    E +
Sbjct: 544 SYTYNVLIEGLCKEKK 559



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 85/459 (18%), Positives = 165/459 (35%), Gaps = 114/459 (24%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G   + + + +++D L K  + ++    +  M E G++ S+ T+ ++ D YC  G  D+
Sbjct: 328 KGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDD 387

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK--------------- 210
           A    D+M  +    +    N L+  +C++  +  +A+  LN++                
Sbjct: 388 AFEILDLMESNSCGPNTRTYNELICGLCKKR-KVHKAMALLNKMLERKLSPSLITYNSLI 446

Query: 211 ----KIVD-----------------PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW 249
               K+ D                 PD  ++++ ++   KEG VEEA   F  +      
Sbjct: 447 HGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSV------ 500

Query: 250 NPEHVLAYETFLITLIRG----KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS 305
             + V A E     LI G     ++D A   L  M  + C P    ++  ++ L K    
Sbjct: 501 KAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKM 560

Query: 306 THAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV------------ 353
             A  L   M+ +G    P ++ Y  +IG +  +   D+  + F+ MV            
Sbjct: 561 KEASSLVAKMLTMGVK--PTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYT 618

Query: 354 --FH---------------------GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 390
              H                     G  PD +TY ++ +   +    H    F   M+  
Sbjct: 619 AFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDT 678

Query: 391 EWQPT------------------------PLNCATAITMLLDAD-----EPEIAIEIWNY 421
             +P+                         ++  + +  +  AD     E EIA++++  
Sbjct: 679 GCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNVNSVDIADVWKTLEYEIALKLFEK 738

Query: 422 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           ++E+G     +    L+ G     RL + +     M  R
Sbjct: 739 MVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKER 777



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 103/245 (42%), Gaps = 4/245 (1%)

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
           F++ P  +  Y T L++L +   +DE       +      P +  F+  ++   K+ +  
Sbjct: 153 FKFKPT-LRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVV 211

Query: 307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM 366
            A      +V  G  L P+   Y ++I   C N  VDN +  F  M   G   + ++Y  
Sbjct: 212 EAELYASKIVQAG--LHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTN 269

Query: 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 426
           +   L +  R++E  K F +M ++   PT       I  L  +     A+ ++N + E G
Sbjct: 270 LIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKG 329

Query: 427 ILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDI 486
             P   +   L+ GL    ++ + R+   EM  + ++   VT + L   +  E   + D 
Sbjct: 330 CEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGM-IDDA 388

Query: 487 FDSLE 491
           F+ L+
Sbjct: 389 FEILD 393


>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 158/378 (41%), Gaps = 10/378 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM--KEDGVLSLPTFASIFDSYC 158
           F R    G RLS  + N M+  L K GR   + +  + M  +  GV ++ TF  + +  C
Sbjct: 182 FDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGV-NVVTFDVVINGLC 240

Query: 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD 218
             GK+ +A    + M   G    V+  N+++   C+              V K + P+  
Sbjct: 241 KVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEI 300

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           +F IL++G+ ++ NV  A K F EM +R    P +V+ Y + +  L    ++DEAL    
Sbjct: 301 TFNILIDGFCRDENVTAAKKVFEEM-QRQGLQP-NVVTYNSLINGLCSNGKLDEALGLQD 358

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            M G    P +  ++  ++   K      A ++ D +   G  L PN+I +N +I     
Sbjct: 359 KMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRG--LAPNVITFNTLIDAYGK 416

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
              +D+ F     M+  G  P+  TYN +     +   V E  K   EM  N  +   + 
Sbjct: 417 AGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVT 476

Query: 399 CATAITMLLDADEPEIAIEIWNYIL---ENGILPLEASANELLVGLRNLGRLSDVRRFAE 455
               +  L    E   A+ + + +    + G      + N L+ G  N G+L +  R   
Sbjct: 477 YNILVDALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLN 536

Query: 456 EMLNRRILIYEVTMHKLK 473
           EML + ++    T   L+
Sbjct: 537 EMLEKGLIPNRTTYDILR 554



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/380 (21%), Positives = 169/380 (44%), Gaps = 16/380 (4%)

Query: 119 MVDVLGKNGRFEQ--MWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176
           ++D   KN  +    +++++ V+   G  +      +  +Y   G+ D A+  FD    +
Sbjct: 129 LLDSFAKNAHYSNSTIFHSLSVLGSWGCANSIIVDMLVWAYVKNGEMDLALEGFDRAGDY 188

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA 236
           G     ++ N +L ++ ++         +   +++ +  +  +F +++ G  K G  ++A
Sbjct: 189 GFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKA 248

Query: 237 NKTFGEMVERFE-WN-PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
               G++VE  + W     V+ Y T +    +  ++ +A   L+ M  +   P    F+ 
Sbjct: 249 ----GDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNI 304

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
            +D   +  + T A ++++ M   G  L PN++ YN++I  LC+N  +D      D+M  
Sbjct: 305 LIDGFCRDENVTAAKKVFEEMQRQG--LQPNVVTYNSLINGLCSNGKLDEALGLQDKMSG 362

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 414
            G  P+ +TYN +     K K + E  +   ++ K    P  +   T I     A   + 
Sbjct: 363 MGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDD 422

Query: 415 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNRRILIYEVTMH 470
           A  + + +L+ G+ P  ++ N L+VG    G + + R+ A+EM    L   ++ Y + + 
Sbjct: 423 AFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVD 482

Query: 471 KLKKAFYNESRSMRDIFDSL 490
            L K    E+R    + D +
Sbjct: 483 ALCKK--GETRKAVRLLDEM 500


>gi|357140426|ref|XP_003571769.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
           mitochondrial-like [Brachypodium distachyon]
          Length = 637

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 96/414 (23%), Positives = 169/414 (40%), Gaps = 46/414 (11%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCG-AGKYDE 165
           +G +L  +A+N+++D L K G  +Q +     MK+   +      +I     G  G+  +
Sbjct: 215 KGYKLDIFAYNMLLDALAKAGMVDQAYQVFEDMKQKYCVPDAYTYTILIRMSGKTGQTYK 274

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICR-------------------QENQ-------- 198
            +  FD M   G   +++A N+++ A+ +                   Q NQ        
Sbjct: 275 FLSFFDEMVSRGCALNLIAYNTVIEALGKNKMVDKVIFVLSKMIESDCQPNQFTYSLTLD 334

Query: 199 ---TSRALEFLNRVKKIVDP--DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH 253
              T   L  LN V  I D   +   ++ L++   K G+  EA+  F  M     WN   
Sbjct: 335 ILATEGQLHRLNEVLDICDRYLNKSIYSYLVKSLCKSGHASEAHNVFCRM-----WNSHE 389

Query: 254 VL---AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
                A+ + L  L    +  EA+  L +M  +     +  ++     L KL   +    
Sbjct: 390 SGDRDAFISMLEVLCNSGKTLEAIDLLHMMPEKGIDTDIGMYNMVFSALGKLKQVSFIST 449

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
           L+D M   G  + P+L  YN +I        VD     F++M      PD +TYN +  C
Sbjct: 450 LFDKMKASG--IAPDLFTYNIMISSYGRVGLVDKASGLFEEMEASSCKPDVITYNTLINC 507

Query: 371 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 430
           L KN  + E    F EM +  + P     +T I     +++ ++A  +++ ++  G +P 
Sbjct: 508 LGKNGDLDEAHILFKEMQEKGYDPDVFTYSTLIECFGKSNKVDMACSLFDEMIAEGCIPN 567

Query: 431 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMR 484
             + N LL  L   G+ ++  +  E M  + +    +T   L++    ESRS R
Sbjct: 568 IVTYNILLDCLERRGKTAEAHKHYETMKQQGLTPDSITYSILERL---ESRSQR 618



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 125/274 (45%), Gaps = 17/274 (6%)

Query: 116 WNLMVDVLGKNGR-------FEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVM 168
           ++ +V  L K+G        F +MWN+      D       F S+ +  C +GK  EA+ 
Sbjct: 361 YSYLVKSLCKSGHASEAHNVFCRMWNSHESGDRDA------FISMLEVLCNSGKTLEAID 414

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
              +M   G++ D+   N + SA+ + +  +  +  F       + PD  ++ I++  + 
Sbjct: 415 LLHMMPEKGIDTDIGMYNMVFSALGKLKQVSFISTLFDKMKASGIAPDLFTYNIMISSYG 474

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           + G V++A+  F EM E     P+ V+ Y T +  L +   +DEA    + M+ +   P 
Sbjct: 475 RVGLVDKASGLFEEM-EASSCKPD-VITYNTLINCLGKNGDLDEAHILFKEMQEKGYDPD 532

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
           +  +S  ++   K N    A  L+D M+  G   +PN++ YN ++  L          + 
Sbjct: 533 VFTYSTLIECFGKSNKVDMACSLFDEMIAEG--CIPNIVTYNILLDCLERRGKTAEAHKH 590

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
           ++ M   G  PDS+TY+++     +++R   + K
Sbjct: 591 YETMKQQGLTPDSITYSILERLESRSQRTARIRK 624


>gi|115473111|ref|NP_001060154.1| Os07g0590600 [Oryza sativa Japonica Group]
 gi|34393454|dbj|BAC82993.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113611690|dbj|BAF22068.1| Os07g0590600 [Oryza sativa Japonica Group]
          Length = 784

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 157/370 (42%), Gaps = 8/370 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG-AGKYDEAVMSFDV 172
           A+  +V    + GRF       R M + GV  ++ T+  +   Y   A  + E V     
Sbjct: 174 AYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVELVAS 233

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEG 231
           M  HGV  D    N+L+S  CR+      A +  + +K    +PD  +F  LL+ + K  
Sbjct: 234 MKEHGVAPDRYTYNTLISC-CRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKAR 292

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
             +EA +   EM ER    P  V+ Y + + + ++   +++A+   + M+ +   P +  
Sbjct: 293 RHDEAIEVIQEM-ERVGC-PPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVT 350

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           ++  +  L +      A+  +D MV  G    PNL  YNA+I +         +   FD+
Sbjct: 351 YTTLISGLDRAGKIDAAIVEYDEMVRNGCK--PNLCTYNALIKMHGVRGKFPEMMAVFDE 408

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
               G  PD +T+N +     +N    EV   F EM K  + P      + I+       
Sbjct: 409 FRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGL 468

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK 471
            ++A++I+  ++E GI P  ++ N +L  L   GR     +   EM  R     E +   
Sbjct: 469 FDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSS 528

Query: 472 LKKAFYNESR 481
           L  A+ N  R
Sbjct: 529 LLHAYANAKR 538



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/347 (20%), Positives = 143/347 (41%), Gaps = 13/347 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           WN ++ V G+NG   ++    + MK+ G +    T+ S+  SY   G +D A+  +  M 
Sbjct: 421 WNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMM 480

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G+  DV   N++LSA+ R          F    ++   PD  S++ LL  +     ++
Sbjct: 481 EAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLD 540

Query: 235 E----ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           +    ++  + E +E   W        +T ++   +   + EA K    ++ + C   + 
Sbjct: 541 KMKALSDDIYSERIEPHNW------LVKTLVLVNSKVNNLAEAEKAFLELRQKRCSLDIN 594

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
             +  + I  K        ++  +M     NL  +   YN+++ +     D +       
Sbjct: 595 VLNAMVSIYGKNRMVRKVEKILSLMKESAINL--SAATYNSLMHMYSRLGDCEKCENILT 652

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
           ++   G  PD  +YN +     +  ++ E  + F EM  +  +P  +     +   +   
Sbjct: 653 EIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNS 712

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
             E AIE+  Y++  G  P E + N ++ G    G+L+D + F   +
Sbjct: 713 MFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKLTDAKIFVSNL 759



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 62/283 (21%), Positives = 117/283 (41%), Gaps = 7/283 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N ++    +   +++       MK  G      TF S+ D Y  A ++DEA+     
Sbjct: 244 YTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQE 303

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEG 231
           M   G    VV  NSL+S+  + +    +A+     ++ K + PD  ++  L+ G ++ G
Sbjct: 304 MERVGCPPSVVTYNSLISSYVK-DGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAG 362

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            ++ A   + EMV R    P          +  +RGK   E +      +     P +  
Sbjct: 363 KIDAAIVEYDEMV-RNGCKPNLCTYNALIKMHGVRGK-FPEMMAVFDEFRSAGFVPDIVT 420

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           ++  L +  +    +    ++  M   G+  +P    Y ++I         D   + + +
Sbjct: 421 WNTLLAVFGQNGLDSEVSGVFKEMKKAGY--IPERDTYVSLISSYSRCGLFDLAMQIYKR 478

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
           M+  G +PD  TYN +   L +  R  + EK F EM + + +P
Sbjct: 479 MMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKP 521



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/280 (20%), Positives = 115/280 (41%), Gaps = 5/280 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++DV GK  R ++    ++ M+  G   S+ T+ S+  SY   G  ++AV     M 
Sbjct: 281 FNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEME 340

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
           + G++ DVV   +L+S + R     +  +E+   V+    P+  ++  L++     G   
Sbjct: 341 VKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFP 400

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           E    F E   R       ++ + T L    +     E     + MK     P    + +
Sbjct: 401 EMMAVFDEF--RSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVS 458

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
            +    +      A+Q++  M+  G  + P++  YNAV+  L      +   + F +M  
Sbjct: 459 LISSYSRCGLFDLAMQIYKRMMEAG--IYPDVSTYNAVLSALARGGRWEQAEKLFAEMEE 516

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
               PD  +Y+ +       KR+ +++    ++     +P
Sbjct: 517 RDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEP 556



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 51/265 (19%), Positives = 102/265 (38%), Gaps = 7/265 (2%)

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
           +HG  + V+    +L+   R   +  R  E    +     PD  ++  L+  + + G   
Sbjct: 132 LHG--EGVLHHPRVLATAIRVMARAGRLAEASALLDAAPGPDAGAYTALVSAFSRAGRFR 189

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIR-GKQVDEALKFLRVMKGENCFPTLKFFS 293
           +A   F  MV+        ++ Y   L    +      E ++ +  MK     P    ++
Sbjct: 190 DAVAVFRRMVD--SGVQPAIVTYNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYN 247

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +    +      A Q++D M   GF   P+ + +N+++ +       D       +M 
Sbjct: 248 TLISCCRRRALYKEAAQVFDEMKASGFE--PDKVTFNSLLDVYGKARRHDEAIEVIQEME 305

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G  P  +TYN +    +K+  + +      EM     +P  +   T I+ L  A + +
Sbjct: 306 RVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKID 365

Query: 414 IAIEIWNYILENGILPLEASANELL 438
            AI  ++ ++ NG  P   + N L+
Sbjct: 366 AAIVEYDEMVRNGCKPNLCTYNALI 390



 Score = 46.6 bits (109), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 80/215 (37%), Gaps = 11/215 (5%)

Query: 248 EWNPEHVLAYETFLITLIR----GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303
           E + E VL +   L T IR      ++ EA   L    G    P    ++  +    +  
Sbjct: 131 ELHGEGVLHHPRVLATAIRVMARAGRLAEASALLDAAPG----PDAGAYTALVSAFSRAG 186

Query: 304 DSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND-DVDNVFRFFDQMVFHGAFPDSL 362
               AV ++  MV  G  + P ++ YN V+ +          V      M  HG  PD  
Sbjct: 187 RFRDAVAVFRRMVDSG--VQPAIVTYNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRY 244

Query: 363 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 422
           TYN +  C  +     E  + F EM  + ++P  +   + + +   A   + AIE+   +
Sbjct: 245 TYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEM 304

Query: 423 LENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
              G  P   + N L+      G L       +EM
Sbjct: 305 ERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEM 339


>gi|15238810|ref|NP_197340.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635760|sp|Q94JX6.2|PP391_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g18390, mitochondrial; Flags: Precursor
 gi|332005166|gb|AED92549.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 459

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/375 (23%), Positives = 164/375 (43%), Gaps = 16/375 (4%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYA--WNLMVDVLGKNGRFEQMWNAVR 137
           T + V  VL+ +  S + ++ FF WA      +P +  +  +   L  + ++E MW  ++
Sbjct: 76  TSEFVFRVLRATSRSSNDSLRFFNWARSNPSYTPTSMEYEELAKSLASHKKYESMWKILK 135

Query: 138 VMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFD-VMSMHGVEQDVVAVNSLLSAICRQ 195
            MK+  + +S  T   I + Y   G  D+AV  F+ V    G +Q V   NSLL A+C  
Sbjct: 136 QMKDLSLDISGETLCFIIEQYGKNGHVDQAVELFNGVPKTLGCQQTVDVYNSLLHALC-D 194

Query: 196 ENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV 254
                 A   + R ++K + PD  ++AIL+ GW   G ++EA +   EM  R  +NP   
Sbjct: 195 VKMFHGAYALIRRMIRKGLKPDKRTYAILVNGWCSAGKMKEAQEFLDEMSRR-GFNPP-A 252

Query: 255 LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314
              +  +  L+    ++ A + +  M      P ++ F+  ++ + K  +    ++++  
Sbjct: 253 RGRDLLIEGLLNAGYLESAKEMVSKMTKGGFVPDIQTFNILIEAISKSGEVEFCIEMYYT 312

Query: 315 MVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN 374
              +G  L  ++  Y  +I  +     +D  FR  +  V  G  P    Y  I + + +N
Sbjct: 313 ACKLG--LCVDIDTYKTLIPAVSKIGKIDEAFRLLNNCVEDGHKPFPSLYAPIIKGMCRN 370

Query: 375 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL---ENGILPLE 431
               +   FF +M      P        ITM     +    ++  NY++   E G++P+ 
Sbjct: 371 GMFDDAFSFFSDMKVKAHPPNRPVYTMLITMCGRGGK---FVDAANYLVEMTEMGLVPIS 427

Query: 432 ASANELLVGLRNLGR 446
              + +  GL+N G+
Sbjct: 428 RCFDMVTDGLKNGGK 442



 Score = 46.6 bits (109), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 87/217 (40%), Gaps = 27/217 (12%)

Query: 247 FEW---NPEHV---LAYETFLITLIRGKQVDEALKFLRVMK-------GEN-CFPTLKFF 292
           F W   NP +    + YE    +L   K+ +   K L+ MK       GE  CF      
Sbjct: 98  FNWARSNPSYTPTSMEYEELAKSLASHKKYESMWKILKQMKDLSLDISGETLCF------ 151

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNL--MPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
                I+ +   + H  Q  ++  G+   L     + +YN+++  LC+       +    
Sbjct: 152 -----IIEQYGKNGHVDQAVELFNGVPKTLGCQQTVDVYNSLLHALCDVKMFHGAYALIR 206

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
           +M+  G  PD  TY ++        ++ E ++F  EM +  + P        I  LL+A 
Sbjct: 207 RMIRKGLKPDKRTYAILVNGWCSAGKMKEAQEFLDEMSRRGFNPPARGRDLLIEGLLNAG 266

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
             E A E+ + + + G +P   + N L+  +   G +
Sbjct: 267 YLESAKEMVSKMTKGGFVPDIQTFNILIEAISKSGEV 303


>gi|115445449|ref|NP_001046504.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|50251963|dbj|BAD27898.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536035|dbj|BAF08418.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|125581581|gb|EAZ22512.1| hypothetical protein OsJ_06176 [Oryza sativa Japonica Group]
 gi|215704610|dbj|BAG94238.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215737116|dbj|BAG96045.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 632

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 143/303 (47%), Gaps = 14/303 (4%)

Query: 161 GKYDEAVMSFDVMSMHG-VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGD 218
           G+Y++    ++ MS  G    D V  ++L+SA C+   Q S A+  LN +K+  + P   
Sbjct: 208 GQYEKVHELYNEMSNEGHCHPDTVTYSALISAFCKLGRQDS-AIRLLNEMKENGMQPTAK 266

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
            + +++  + K  NV  A   F EM  R+ +    V  Y   +  L +  ++DEA  F  
Sbjct: 267 IYTMIISLFFKLDNVHGALSLFEEM--RYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYH 324

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI-GLLC 337
            M+ E+C P     +N ++ L K       ++L++ M G+  + +PN++ YN +I  L  
Sbjct: 325 EMQREDCKPDTVVMNNMINFLGKAGRLDDGLKLFEEM-GVS-HCIPNVVTYNTIIKALFE 382

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
           +   V  VF +F++M   G  P   TY+++ +   K  R+ +      EM +  + P P 
Sbjct: 383 SKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPA 442

Query: 398 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL---GRLSDVRRFA 454
              + I  L  A   ++A E++  + EN      +SA    V +++L   GRL D     
Sbjct: 443 AYCSLIDALGKAKRYDLACELFQELKENC---GSSSARVYAVMIKHLGKAGRLDDAINLF 499

Query: 455 EEM 457
           +EM
Sbjct: 500 DEM 502



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 88/383 (22%), Positives = 169/383 (44%), Gaps = 13/383 (3%)

Query: 43  HLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSY--DSPSSAVD 100
           H D    S+     C++    S+  + + +   G+ PT  +   ++ L +  D+   A+ 
Sbjct: 227 HPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALS 286

Query: 101 FFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSY 157
            F    R     P  + +  ++  LGK GR ++ ++    M +ED         ++ +  
Sbjct: 287 LFEEM-RYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREDCKPDTVVMNNMINFL 345

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPD 216
             AG+ D+ +  F+ M +     +VV  N+++ A+   +++ S    +  R+K   + P 
Sbjct: 346 GKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPS 405

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
             +++IL++G+ K   +E+A     EM E+    P    AY + +  L + K+ D A + 
Sbjct: 406 PFTYSILIDGFCKTNRIEKAMMLLEEMDEK--GFPPCPAAYCSLIDALGKAKRYDLACEL 463

Query: 277 LRVMKGENC-FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGL 335
            + +K ENC   + + ++  +  L K      A+ L+D M  +G    PN+  YNA++  
Sbjct: 464 FQELK-ENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCT--PNVYAYNALMSG 520

Query: 336 LCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 395
           L     +D       +M  HG  PD  +YN+I   L K    H   +    M  +  +P 
Sbjct: 521 LARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPD 580

Query: 396 PLNCATAITMLLDADEPEIAIEI 418
            ++  T ++ L  A   E A E+
Sbjct: 581 AVSYNTVLSALSHAGMFEEAAEL 603



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/307 (21%), Positives = 122/307 (39%), Gaps = 44/307 (14%)

Query: 72  LACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRW----AGRGQRLSPYAWNLMVDVLGKNG 127
           +  +  IP     + +++  ++S S   + F W     G G   SP+ +++++D   K  
Sbjct: 361 MGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTN 420

Query: 128 RFEQMWNAVRVMKEDGVLSLPT-FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN 186
           R E+    +  M E G    P  + S+ D+   A +YD A   F  +             
Sbjct: 421 RIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQEL------------- 467

Query: 187 SLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
                   +EN  S +                 +A++++   K G +++A   F EM  +
Sbjct: 468 --------KENCGSSSARV--------------YAVMIKHLGKAGRLDDAINLFDEM-SK 504

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
               P +V AY   +  L R   +DEAL  +R M+   C P +  ++  L+ L K     
Sbjct: 505 LGCTP-NVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPH 563

Query: 307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM 366
            A+++   M      + P+ + YN V+  L +    +       +M   G   D +TY+ 
Sbjct: 564 RAMEMLTNMKN--STIKPDAVSYNTVLSALSHAGMFEEAAELMKEMNALGFEYDLITYSS 621

Query: 367 IFECLIK 373
           I E + K
Sbjct: 622 ILEAIGK 628



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 90/226 (39%), Gaps = 1/226 (0%)

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNL 326
            K + +A+     +K   C PT + +++ + +L+         +L++ M   G +  P+ 
Sbjct: 172 AKMIGKAITIFYQIKARKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMSNEG-HCHPDT 230

Query: 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 386
           + Y+A+I   C     D+  R  ++M  +G  P +  Y MI     K   VH     F E
Sbjct: 231 VTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEE 290

Query: 387 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 446
           M     +P        I  L  A   + A   ++ +      P     N ++  L   GR
Sbjct: 291 MRYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREDCKPDTVVMNNMINFLGKAGR 350

Query: 447 LSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLER 492
           L D  +  EEM     +   VT + + KA +     + ++F   ER
Sbjct: 351 LDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFER 396


>gi|242069107|ref|XP_002449830.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
 gi|241935673|gb|EES08818.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
          Length = 676

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 89/395 (22%), Positives = 164/395 (41%), Gaps = 12/395 (3%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLG--KNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCG 159
           R A  G  + P A +    VLG  + GRFE+    +  M  +G  L   T   +  ++C 
Sbjct: 169 RQAFDGMGVRPDARSFRALVLGCCQEGRFEEADALLAAMWREGFSLDSATCTVVVRAFCR 228

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE--NQTSRALEFLNRVKKIVDPDG 217
            G++ +    F  M   G   +VV   + +  +C++    Q    LE +  V K + P+ 
Sbjct: 229 QGRFRDVPGLFGRMVEMGNPPNVVNYTAWVDGLCKRGYVKQAFHVLEEM--VGKGLKPNV 286

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            +   L++G  K G  E A + F ++V+   + P +V  Y   +    +  ++  A   L
Sbjct: 287 YTHTSLIDGLCKIGWTERAFRLFLKLVKSSSYKP-NVHTYTVMIGGYCKEGKLARAEMLL 345

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337
             M  +   P    ++  +D   +      A +L + M   GF  +PN+  YNA+IG  C
Sbjct: 346 GRMVEQGLAPNTNTYTTLIDGHCRGGSFDRAFELMNKMKLEGF--LPNIYTYNAIIGGFC 403

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
               +   ++        G  PD +TY M+     K   +      F++M +N   P   
Sbjct: 404 KKGKIQQAYKVLRMATSQGLCPDKVTYTMLITEHCKQGHITYALDLFNQMAENSCHPDID 463

Query: 398 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
              T I M     + E + ++++  L  G++P + +   ++ G   +G+ +   +  E M
Sbjct: 464 TYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRVGKSTSALKVFERM 523

Query: 458 LNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSL 490
           +    L   +T   L      ESR    R +F+++
Sbjct: 524 VQHGCLPDPITYGALISGLCKESRLEEARALFETM 558



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 84/377 (22%), Positives = 155/377 (41%), Gaps = 18/377 (4%)

Query: 121 DVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQ 180
           DV G  GR  +M N   V+          + +  D  C  G   +A    + M   G++ 
Sbjct: 234 DVPGLFGRMVEMGNPPNVVN---------YTAWVDGLCKRGYVKQAFHVLEEMVGKGLKP 284

Query: 181 DVVAVNSLLSAICRQENQTSRALE-FLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANK 238
           +V    SL+  +C+    T RA   FL  VK     P+  ++ +++ G+ KEG +  A  
Sbjct: 285 NVYTHTSLIDGLCKI-GWTERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEM 343

Query: 239 TFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDI 298
             G MVE  +    +   Y T +    RG   D A + +  MK E   P +  ++  +  
Sbjct: 344 LLGRMVE--QGLAPNTNTYTTLIDGHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGG 401

Query: 299 LVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAF 358
             K      A ++  +    G  L P+ + Y  +I   C    +      F+QM  +   
Sbjct: 402 FCKKGKIQQAYKVLRMATSQG--LCPDKVTYTMLITEHCKQGHITYALDLFNQMAENSCH 459

Query: 359 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 418
           PD  TY  I     + +++ + ++ F + +     PT     + I       +   A+++
Sbjct: 460 PDIDTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRVGKSTSALKV 519

Query: 419 WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 478
           +  ++++G LP   +   L+ GL    RL + R   E ML++ ++  +VT   L   +  
Sbjct: 520 FERMVQHGCLPDPITYGALISGLCKESRLEEARALFETMLDKHMVPCDVTCVTLAYEYCR 579

Query: 479 ESRSMRDI--FDSLERR 493
             ++   +   D L++R
Sbjct: 580 RDKTTIAVSFLDGLDKR 596


>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 654

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/362 (21%), Positives = 161/362 (44%), Gaps = 24/362 (6%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF ++ +  C  G+  EAV   D M   G++ + +   +++  +C+  +  S AL  L +
Sbjct: 181 TFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVS-ALNLLRK 239

Query: 209 VKKI--VDPDG-----DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFL 261
           ++++  + P+      +    ++ G+   G   EA +   EM+ER + +P+ V+ Y   +
Sbjct: 240 MEEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEMLERKKISPD-VVTYNALI 298

Query: 262 ITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFN 321
              ++  +  EA +    M      P+   +S+ +D   K N    A  ++ +M   G +
Sbjct: 299 NAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCS 358

Query: 322 LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 381
             P++I +N +I   C    VD+  +   +M   G   +++TY  +     +   ++  +
Sbjct: 359 --PDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQ 416

Query: 382 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE-----------NGILPL 430
               EM+ +   P  + C T +  L D  + + A+E++  + +           NG+ P 
Sbjct: 417 DLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPD 476

Query: 431 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFD 488
             + N L+ GL N G+  +     EEM +R I+   +T + +      +SR      +FD
Sbjct: 477 VQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMFD 536

Query: 489 SL 490
           S+
Sbjct: 537 SM 538



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/383 (20%), Positives = 164/383 (42%), Gaps = 35/383 (9%)

Query: 109 QRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +++SP    +N +++   K G+F +       M   G++ S  T++S+ D +C   + D 
Sbjct: 285 KKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDA 344

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILL 224
           A   F +M+  G   D++  N+L++  CR + +    ++ L+ + +  +  +  ++  L+
Sbjct: 345 AEHMFYLMATKGCSPDIITFNTLIAGYCRAK-RVDDGIKLLHEMTEAGLVANTITYTTLI 403

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G+ + G++  A     EMV        +V+   T L  L    ++ +AL+  + M+   
Sbjct: 404 HGFCQVGDLNAAQDLLQEMVS--SGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQ--- 458

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFN-LMPNLIMYNAVIGLLCNNDDVD 343
                    + +DI     D++H            FN + P++  YN +I  L N     
Sbjct: 459 --------KSKMDI-----DASHP-----------FNGVEPDVQTYNILISGLINEGKFL 494

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
                +++M   G  PD++TYN +   L K  R+ E  + F  M    + P  +   T I
Sbjct: 495 EAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLI 554

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
                A   +  +E++  +   GI+    +   L+ G R +G ++      +EM+   + 
Sbjct: 555 NGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIHGFRKVGNINGALDIFQEMMASGVY 614

Query: 464 IYEVTMHKLKKAFYNESRSMRDI 486
              +T+  +    +++    R +
Sbjct: 615 PDTITIRNMLTGLWSKEELKRAV 637



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 90/409 (22%), Positives = 164/409 (40%), Gaps = 52/409 (12%)

Query: 98  AVDFFRWAGRGQRL-SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFD 155
           A+D F    R + L S   +  ++ V+ + GR + + +  R M+   V  +  +F  +  
Sbjct: 62  AIDLFGDMVRSRPLPSVIDFCKLMGVVVRMGRLDVVISLHRKMEMRRVPCNAYSFTILMK 121

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDP 215
            +C   K   A+ +F  ++  G    VV  ++LL  +C  E++ S AL+  +++ K   P
Sbjct: 122 CFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLC-VEDRISEALDLFHQMCK---P 177

Query: 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK 275
           +  +F  L+ G  +EG V EA      M+E     P  +  Y T +  + +      AL 
Sbjct: 178 NVVTFTTLMNGLCREGRVVEAVALLDRMLED-GLQPNQI-TYGTIVDGMCKMGDTVSALN 235

Query: 276 FLRVM---------------KGENCF---------------------------PTLKFFS 293
            LR M               +   C                            P +  ++
Sbjct: 236 LLRKMEEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYN 295

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             ++  VK      A +L+D M+  G  ++P+ I Y+++I   C  + +D     F  M 
Sbjct: 296 ALINAFVKEGKFFEAEELYDEMLPRG--IIPSTITYSSMIDGFCKQNRLDAAEHMFYLMA 353

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G  PD +T+N +     + KRV +  K  HEM +       +   T I       +  
Sbjct: 354 TKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLN 413

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
            A ++   ++ +G+ P   + N LL GL + G+L D     + M   ++
Sbjct: 414 AAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKM 462


>gi|222628656|gb|EEE60788.1| hypothetical protein OsJ_14372 [Oryza sativa Japonica Group]
          Length = 748

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 130/285 (45%), Gaps = 4/285 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIF-DSYCGAGKYDE 165
           +G + +  +++ ++      G F  M + V +M   G++    F +I  ++Y   G  D+
Sbjct: 291 KGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDK 350

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A++ F+ M   G+  D V   +++S++CR         +F + V   V P    +  L++
Sbjct: 351 AMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQ 410

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G    G + +A +   EM+ + +  P  V  + + +  L +  +V E    + +M     
Sbjct: 411 GCCNHGELVKAKELISEMMNK-DIPPPGVKYFSSIINNLFKEGRVAEGKDIMDLMVQTGQ 469

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P +  F++ ++    + +   A  L D M  IG    PN  +Y  ++   C N  +D+ 
Sbjct: 470 RPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIE--PNCYIYGTLVDGYCKNGRIDDA 527

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 390
              F  M+  G  P S+ YN+I   L + +R    +K FHEMI++
Sbjct: 528 LTVFRDMLHKGVKPTSVLYNIILHGLFQARRTTAAKKMFHEMIES 572



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 84/380 (22%), Positives = 152/380 (40%), Gaps = 51/380 (13%)

Query: 93  DSPSSAVDFF----RWA---GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGV 144
           D P+ AV+ F    RWA         + Y +N+++D   +  R E       R+++    
Sbjct: 95  DGPALAVELFKRMDRWACPHAAADAPTIYTYNILIDCYRRMHRPELALAVFGRLLRTGLG 154

Query: 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN--QTSRA 202
             + ++ ++ D +   G+ D+A   F  M    V  DVV  NSL+  +C+ +   ++ R 
Sbjct: 155 PDVCSYNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERV 214

Query: 203 LEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI 262
           LE +  V   + P+  ++  L+ G+   G  +E+ + F EM          V+   +F+ 
Sbjct: 215 LEQM--VDAGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSS--SGLIPCVVNCNSFIH 270

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL 322
            L R  ++ EA      M  +   P +  +S  L          +   L ++MV  G  +
Sbjct: 271 ALCRHNRIKEAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKG--I 328

Query: 323 MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
           +PN   +N +I        +D     F+ M   G  PD++T+                  
Sbjct: 329 VPNHRFFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTF------------------ 370

Query: 383 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 442
                            AT I+ L      + A+  +N++++ G+ P EA    L+ G  
Sbjct: 371 -----------------ATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQGCC 413

Query: 443 NLGRLSDVRRFAEEMLNRRI 462
           N G L   +    EM+N+ I
Sbjct: 414 NHGELVKAKELISEMMNKDI 433



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/350 (20%), Positives = 140/350 (40%), Gaps = 39/350 (11%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N++++   + G  ++       M+  G++    TFA++  S C  G+ D+A+  F+ M 
Sbjct: 335 FNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMV 394

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV--KKIVDPDGDSFAILLEGWEKEGN 232
             GV         L+   C    +  +A E ++ +  K I  P    F+ ++    KEG 
Sbjct: 395 DIGVPPSEAVYRCLIQGCCNH-GELVKAKELISEMMNKDIPPPGVKYFSSIINNLFKEGR 453

Query: 233 VEEANK---------------TFGEMVERF--EWNPEHVLA----------------YET 259
           V E                  TF  ++E +    N E   A                Y T
Sbjct: 454 VAEGKDIMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGT 513

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG 319
            +    +  ++D+AL   R M  +   PT   ++  L  L +   +T A +++  M+  G
Sbjct: 514 LVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYNIILHGLFQARRTTAAKKMFHEMIESG 573

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
             +  ++  Y  V+G LC N+  D      +++       D +T+N++   ++K  R  E
Sbjct: 574 TTV--SIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMLKVGRRQE 631

Query: 380 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
            ++ F  +      PT       I+ L+  +  E A  ++  + ++G  P
Sbjct: 632 AKELFAAISTYGLVPTVHTYNLMISNLIKEESYEEADNLFISVEKSGRAP 681



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 56/258 (21%), Positives = 107/258 (41%), Gaps = 12/258 (4%)

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           P   ++ IL++ + +    E A   FG ++ R    P+ V +Y T +    +  +VD+A 
Sbjct: 120 PTIYTYNILIDCYRRMHRPELALAVFGRLL-RTGLGPD-VCSYNTLIDGFSKEGEVDKAY 177

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
           +    M  ++  P +  +++ +D L K  +   + ++ + MV  G  + PN   YN++I 
Sbjct: 178 ELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAG--IRPNNKTYNSLIY 235

Query: 335 LLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
                       R F +M   G  P  +  N     L ++ R+ E +  F  M+    +P
Sbjct: 236 GYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKP 295

Query: 395 TPLNCATAITMLLDADEPEIAI----EIWNYILENGILPLEASANELLVGLRNLGRLSDV 450
             ++ +T    LL     E        + N ++  GI+P     N L+      G +   
Sbjct: 296 NIISYST----LLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKA 351

Query: 451 RRFAEEMLNRRILIYEVT 468
               E+M N+ ++   VT
Sbjct: 352 MLIFEDMQNKGMIPDTVT 369



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 36/188 (19%), Positives = 84/188 (44%), Gaps = 6/188 (3%)

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346
           PT+  ++  +D   +++    A+ ++  ++  G  L P++  YN +I       +VD  +
Sbjct: 120 PTIYTYNILIDCYRRMHRPELALAVFGRLLRTG--LGPDVCSYNTLIDGFSKEGEVDKAY 177

Query: 347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406
             F +M+     PD +TYN + + L K K + + E+   +M+    +P      + I   
Sbjct: 178 ELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGY 237

Query: 407 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR----RI 462
             A   + ++ ++  +  +G++P   + N  +  L    R+ + +   + M+ +     I
Sbjct: 238 STAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNI 297

Query: 463 LIYEVTMH 470
           + Y   +H
Sbjct: 298 ISYSTLLH 305



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 37/169 (21%), Positives = 70/169 (41%), Gaps = 2/169 (1%)

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           P +  YN +I         +     F +++  G  PD  +YN + +   K   V +  + 
Sbjct: 120 PTIYTYNILIDCYRRMHRPELALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAYEL 179

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
           F++MI+    P  +   + I  L    E   +  +   +++ GI P   + N L+ G   
Sbjct: 180 FYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYST 239

Query: 444 LGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF--YNESRSMRDIFDSL 490
            G   +  R  +EM +  ++   V  +    A   +N  +  +DIFDS+
Sbjct: 240 AGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSM 288


>gi|449435202|ref|XP_004135384.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 717

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 91/393 (23%), Positives = 163/393 (41%), Gaps = 40/393 (10%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDE 165
           RG   +   +N++V+ L K G  EQ    +  M   G+ +S  T+  + + +C  G + E
Sbjct: 244 RGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVE 303

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A    + M        +   N+L+  +C+    T   L F + +K    PD  SF  LL 
Sbjct: 304 AFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLY 363

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+ + G + EA   F E+  R +  P  V+ Y T +  L     +D AL+  + M  +  
Sbjct: 364 GYCRTGCISEAFLLFDELKCR-DLVPT-VITYNTLIHGLCMWGYLDAALRLKKEMTDQGL 421

Query: 286 FPTL--------------------KFFSNALD-------------IL--VKLNDSTHAVQ 310
           FP +                     FF+  L              I+  +K+ D++ A  
Sbjct: 422 FPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFS 481

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
           + + M+  GF   P++I YN  +  LC   + +      + MV  G  PD +TY  I   
Sbjct: 482 MQEEMLAAGFP--PDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIING 539

Query: 371 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 430
            +KN  + +  + F+EM+     P+ +     I         ++A   ++ +LE  +   
Sbjct: 540 FVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPAN 599

Query: 431 EASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
             + N ++ GL    R+ +  ++ +EM  + IL
Sbjct: 600 VITYNAIINGLCMTRRMDEAYKYFDEMEEKGIL 632



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 107/481 (22%), Positives = 190/481 (39%), Gaps = 70/481 (14%)

Query: 76  GIIPTPDLVHEVLQLSYDSPSSAVDFFRW--AGRGQRLSPYAWNLMVDVL-GKNGRFEQM 132
            +I  P L   VL      P  A+ FFRW  A    + S + +  ++D+L G +      
Sbjct: 80  AVITDPHLFIRVLHSMRIRPRVALRFFRWVMAQPDFKESEFVFCAILDILVGNDLMHAAY 139

Query: 133 WNAVRVMKED--GVLSLPTFASI-----FDSYCGAGKY--------------DEAVMS-- 169
           W   RV+  +  GV+ +     +     FD     G                DE ++S  
Sbjct: 140 WVMERVVSFEMHGVVDVLIAGHVXCLLVFDKMIRNGLLPDVKNCNRILRVLRDENLLSKA 199

Query: 170 ---FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLE 225
              + +M   G++  VV  N++L + C+ E +  +ALE L+ ++ +   P+  ++ +L+ 
Sbjct: 200 KNVYGMMEQFGIKPTVVTYNTMLDSYCK-EGRVDQALELLSEMQERGCYPNDVTYNVLVN 258

Query: 226 GWEKEGNVEEANKTFGEM------VERFEWNP------------------EHVL------ 255
           G  K+G +E+A     EM      V  + +NP                  E ++      
Sbjct: 259 GLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFP 318

Query: 256 ---AYETFLITLIRGKQVDEA-LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
               Y T +  L +  QV    L+F  ++K +   P +  F++ L    +    + A  L
Sbjct: 319 TLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFT-PDIVSFNSLLYGYCRTGCISEAFLL 377

Query: 312 WDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECL 371
           +D +     +L+P +I YN +I  LC    +D   R   +M   G FPD  TY ++    
Sbjct: 378 FDELKCR--DLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGC 435

Query: 372 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 431
            K   V     FF+EM+    +P      T I   +   +  +A  +   +L  G  P  
Sbjct: 436 FKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDV 495

Query: 432 ASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES--RSMRDIFDS 489
            + N  +  L   G   +     E M++  ++   VT   +   F      R  R++F+ 
Sbjct: 496 ITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNE 555

Query: 490 L 490
           +
Sbjct: 556 M 556



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 91/209 (43%), Gaps = 4/209 (1%)

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M   G   DV+  N  + A+C+Q N         N V   + PD  ++  ++ G+ K G+
Sbjct: 486 MLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGH 545

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           + +A + F EM+ +       V+ Y   +      + +D A  +   M  ++    +  +
Sbjct: 546 LRKAREVFNEMLSK--GVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITY 603

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  ++ L        A + +D M   G  ++PN   Y  +I   CN    +   R + +M
Sbjct: 604 NAIINGLCMTRRMDEAYKYFDEMEEKG--ILPNKFSYTILINESCNMGYWEEALRLYREM 661

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVE 381
           +     PDS T+++  + L ++ +VH V+
Sbjct: 662 LDRKIQPDSFTHSVFLKNLHRDYQVHAVQ 690


>gi|297741630|emb|CBI32762.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/355 (22%), Positives = 154/355 (43%), Gaps = 7/355 (1%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKY 163
           A +G + +   +N  ++   K      +   + +M+++GV  ++ T+  +   +   GK 
Sbjct: 256 AAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKI 315

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
           +EA   F+ M   G+E DV    S++S  CR  N     + F     K + P   ++  L
Sbjct: 316 EEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGAL 375

Query: 224 LEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           + G  K G +E A     EM  +  + NP   + + T +        VDEAL+   VM+ 
Sbjct: 376 IHGVCKAGQMEAAQMLVNEMQGKGIDLNP---VIFNTLIDGYCESGMVDEALRLQVVMEK 432

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
           +     +  +++    L KLN    A  L   MV  G +  PN + +  +I + C   + 
Sbjct: 433 KGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVS--PNTMSFTTLIDIYCKEGNF 490

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
               R F +M   G  P+ +TYN++ +   K   + E  K   E+      P    C + 
Sbjct: 491 VEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSL 550

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           I       + ++A+++++ + + G++P   +   ++ GL   GR  +  +  +EM
Sbjct: 551 IHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEM 605



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 122/261 (46%), Gaps = 5/261 (1%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSF 170
           S + +  ++  + K G+ E     V  M+  G+ L+   F ++ D YC +G  DEA+   
Sbjct: 368 SAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQ 427

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
            VM   G+E DV A NS+ S +C+   +        + V++ V P+  SF  L++ + KE
Sbjct: 428 VVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKE 487

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           GN  EA + F EM E+   N  +++ Y   +    +   + EA K    ++     P + 
Sbjct: 488 GNFVEAKRVFREMEEK--GNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVY 545

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
             ++ +           A++L+D M   G  L+PN++ Y A+I  L  +   +  F+ +D
Sbjct: 546 TCTSLIHGECIDGKVDMALKLFDEMPQRG--LVPNVVTYTAMISGLSKDGRSEEAFKLYD 603

Query: 351 QMVFHGAFPDSLTYNMIFECL 371
           +M   G  PD   Y+ +   L
Sbjct: 604 EMKETGLTPDDTVYSSLVGSL 624



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 63/314 (20%), Positives = 125/314 (39%), Gaps = 6/314 (1%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F  +F  Y     + EA+ +F+ M   G   D  +    L A+ R+  Q    L F  R+
Sbjct: 162 FDLLFRVYADNKMFGEALEAFEHMEKKGFHIDERSCLVYLLAL-RRGGQVDSCLRFFRRM 220

Query: 210 KKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
             + V+    S  I+L+G  K G+VE   K   E+  +      +V+ Y  F+    +  
Sbjct: 221 VNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAK--GVKANVVTYNAFIEGYFKRL 278

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
            +    + L +M+ E     +  ++  +     +     A +L++ M   G     ++ +
Sbjct: 279 DLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIE--ADVYV 336

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           Y ++I   C + +V      FD+M   G  P + TY  +   + K  ++   +   +EM 
Sbjct: 337 YTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQ 396

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
                  P+   T I    ++   + A+ +   + + G+     + N +  GL  L R  
Sbjct: 397 GKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKD 456

Query: 449 DVRRFAEEMLNRRI 462
           + +     M+ R +
Sbjct: 457 EAKGLLFSMVERGV 470


>gi|356573388|ref|XP_003554843.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g61360-like [Glycine max]
          Length = 491

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/377 (22%), Positives = 166/377 (44%), Gaps = 12/377 (3%)

Query: 91  SYDSPSSAVDFFRWAGRGQR--LSPYAWNLMVDVLGKNGRFEQMWNAVR--VMKEDGVLS 146
           S+ +   A++FF ++       LSP + N+ + +L +   F++ W  +R        +L+
Sbjct: 64  SHSNGLKALEFFNYSLVHSHFPLSPASLNMTLHILTRMRYFDKAWVLLRDIARTHPSLLT 123

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMS---MHGVEQDVVAVNSLLSAICRQENQTSRAL 203
           L + + +         +++ +  F  M      G E      N LL A C Q  Q   A 
Sbjct: 124 LKSMSIVLSKIAKFQSFEDTLDGFRRMEDEVFVGREFGTDEFNVLLKAFCTQR-QMKEAR 182

Query: 204 EFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT 263
               ++     P+  S  ILL G+++ GNV      + EMV R  ++P+ V  +   +  
Sbjct: 183 SVFAKLVPRFSPNTKSMNILLLGFKESGNVTSVELFYHEMVRR-GFSPDGV-TFNIRIDA 240

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLM 323
             +     +AL+ L  M+  N  PT++  +  +     + +   A QL+  +     N++
Sbjct: 241 YCKKGCFGDALRLLEEMERRNVVPTIETITTLIHGAGLVRNKDKAWQLFKEIPSR--NMV 298

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
            +   YNA+I  L    D+++     D+MV      DS+TY+ +F   ++++ +  V K 
Sbjct: 299 ADAGAYNALITALVRTRDIESASSLMDEMVEKCIELDSVTYHTMFLGFMRSRGIEGVSKL 358

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
           + +M ++ + P        +         ++++ +W Y++E G  P   + + L+ GL  
Sbjct: 359 YQKMTQSNFVPKTRTVVMLMKYFCQNYRLDLSVCLWKYLVEKGYCPHAHALDLLVTGLCA 418

Query: 444 LGRLSDVRRFAEEMLNR 460
            G + D    +++ML R
Sbjct: 419 RGLVHDAFECSKQMLER 435


>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
 gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
          Length = 896

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 151/355 (42%), Gaps = 6/355 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           RG   S  ++N ++  LGK  + ++       MK+D   +  T+  I D  C AGK +EA
Sbjct: 351 RGCIPSVVSFNSILTCLGKKRKVDEALTLFEAMKKDAEPNSSTYNIIIDMLCMAGKVEEA 410

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
            M  D M   G+  +++ VN ++  +C+ +        F    ++  +P+  ++  L++G
Sbjct: 411 YMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCSLIDG 470

Query: 227 WEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
             K+GNV++A + F  M++     NP   + Y + +       + ++  K  + M    C
Sbjct: 471 LGKKGNVDDAYRLFENMLDTGHNANP---VVYTSLIRNFFMHGRKEDGHKIFKEMNRRGC 527

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P L   +  +D + K  D      +++ + G GF  +P++  Y+ +I  L         
Sbjct: 528 QPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGF--LPDVRSYSILIHGLTKAGQARET 585

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
              F  M   G   D+  YN + +   K+ ++ +  +   EM      PT     + I  
Sbjct: 586 SSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDG 645

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           L   D  + A  ++      GI       + L+ G   +GR+ +     EEM+ +
Sbjct: 646 LAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKK 700



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 90/417 (21%), Positives = 182/417 (43%), Gaps = 20/417 (4%)

Query: 45  DAPYISSSARIICEILAHASS--------DDIESALACTGIIPTPDLVHEVLQLSYDSPS 96
           DA   SS+  II ++L  A          D++E A     ++    +V  + +     P 
Sbjct: 386 DAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEP- 444

Query: 97  SAVDFFRWAG-RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT-FASIF 154
            A + F  A  RG   +   +  ++D LGK G  +  +     M + G  + P  + S+ 
Sbjct: 445 -AYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLI 503

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN-QTSRALEFLNRVKKIV 213
            ++   G+ ++    F  M+  G + D+  +N+ +  + +  + +  RA+ F +      
Sbjct: 504 RNFFMHGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAI-FEDIKGYGF 562

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDE 272
            PD  S++IL+ G  K G   E +  F  M ++ F  +     AY   +    +  ++D+
Sbjct: 563 LPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDAR---AYNAVVDGFCKSGKLDK 619

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAV 332
           A + L  MK +   PT+  + + +D L K++    A  L++     G  L  N+I+Y+++
Sbjct: 620 AYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIEL--NVIVYSSL 677

Query: 333 IGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 392
           I        +D  +   ++M+  G  P+  T+N + + L+K + ++E    F  M + + 
Sbjct: 678 IDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKC 737

Query: 393 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 449
            P     +  I  L    +   A   W  + + G++P   +   ++ GL  +G ++D
Sbjct: 738 SPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNITD 794



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 135/320 (42%), Gaps = 9/320 (2%)

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEE 235
           G E  V    +L+ A+ R E +   AL  ++ VK   ++PD   + + ++ + K GNV+ 
Sbjct: 212 GYEVGVPLFTTLVRALAR-EGRVEGALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDM 270

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
           A K F E+  +    P+ V +Y + +  L +  ++ EA +    M+ E   P    ++  
Sbjct: 271 AWKFFHELKSQ-GLKPDDV-SYTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYNTM 328

Query: 296 LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
           +          +A +L D +   G   +P+++ +N+++  L     VD     F+ M   
Sbjct: 329 IMGYGSAGQFENAYKLLDQLKERG--CIPSVVSFNSILTCLGKKRKVDEALTLFEAMK-K 385

Query: 356 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 415
            A P+S TYN+I + L    +V E      EM      P  L     +  L  A + E A
Sbjct: 386 DAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPA 445

Query: 416 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKA 475
            E++    + G  P   +   L+ GL   G + D  R  E ML+       V    L + 
Sbjct: 446 YEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRN 505

Query: 476 FYNESRS--MRDIFDSLERR 493
           F+   R      IF  + RR
Sbjct: 506 FFMHGRKEDGHKIFKEMNRR 525



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 100/237 (42%), Gaps = 4/237 (1%)

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
           A L+    +   +++A +    M  R ++ P    AY   +  +   +Q + AL+ LR M
Sbjct: 151 ADLVSALVRTRRLDDAERVIAAM-RRLKFRPAFS-AYTVLIGAMAEARQPERALELLRQM 208

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
           +       +  F+  +  L +      A+ L D + G    L P++++YN  I       
Sbjct: 209 QEVGYEVGVPLFTTLVRALAREGRVEGALALVDEVKGS--CLEPDIVLYNVCIDCFGKAG 266

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
           +VD  ++FF ++   G  PD ++Y  +   L K  R+ E E+ F +M      P      
Sbjct: 267 NVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYN 326

Query: 401 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           T I     A + E A ++ + + E G +P   S N +L  L    ++ +     E M
Sbjct: 327 TMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAM 383



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/198 (18%), Positives = 86/198 (43%), Gaps = 2/198 (1%)

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL 322
            L+R +++D+A + +  M+     P    ++  +  + +      A++L   M  +G+ +
Sbjct: 156 ALVRTRRLDDAERVIAAMRRLKFRPAFSAYTVLIGAMAEARQPERALELLRQMQEVGYEV 215

Query: 323 MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
              + ++  ++  L     V+      D++      PD + YN+  +C  K   V    K
Sbjct: 216 --GVPLFTTLVRALAREGRVEGALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWK 273

Query: 383 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 442
           FFHE+     +P  ++  + I +L  A     A E++  +     +P   + N +++G  
Sbjct: 274 FFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYNTMIMGYG 333

Query: 443 NLGRLSDVRRFAEEMLNR 460
           + G+  +  +  +++  R
Sbjct: 334 SAGQFENAYKLLDQLKER 351


>gi|302754000|ref|XP_002960424.1| hypothetical protein SELMODRAFT_74408 [Selaginella moellendorffii]
 gi|300171363|gb|EFJ37963.1| hypothetical protein SELMODRAFT_74408 [Selaginella moellendorffii]
          Length = 321

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 136/324 (41%), Gaps = 42/324 (12%)

Query: 139 MKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           M E G + ++ TF  + D  C A +  +A    +VM+  G   + +  N ++ A+C+ E 
Sbjct: 1   MAEKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMAERGCFPNALVFNGIMDALCK-EG 59

Query: 198 QTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
           +++ A  ++  ++ + V P   ++ IL++G+ KE  +  A +   EM  R    P HV  
Sbjct: 60  RSAEAYGYIETMRSMGVSPTIVTYNILIDGFCKEEKLHRALEILQEMTGRGH-EPNHV-T 117

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
           Y TFL  L +  +VD+AL   R M  +     +  ++  +D L +      A  L D M 
Sbjct: 118 YNTFLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEME 177

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
             G   +P    YNA++  LC    ++   + F +M   G  PD LT+ M+     +  R
Sbjct: 178 NSG--CVPKPGCYNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHR 235

Query: 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 436
           + +      +M                                      G+ P E   N 
Sbjct: 236 IDDALLLLQQMK-----------------------------------SAGLAPREVIYNT 260

Query: 437 LLVGLRNLGRLSDVRRFAEEMLNR 460
           L+  L   GR+S+  R  +EM++R
Sbjct: 261 LIDALNRAGRVSEAYRLLQEMISR 284



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 113/287 (39%), Gaps = 38/287 (13%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           + ++VD L K  R    +  V VM E G   +   F  I D+ C  G+  EA    + M 
Sbjct: 13  FGILVDGLCKANRLTDAFELVEVMAERGCFPNALVFNGIMDALCKEGRSAEAYGYIETMR 72

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNV 233
             GV   +V  N L+   C++E +  RALE L  +  +  +P+  ++   L G  K G V
Sbjct: 73  SMGVSPTIVTYNILIDGFCKEE-KLHRALEILQEMTGRGHEPNHVTYNTFLHGLCKYGKV 131

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           ++A   F  M E+       V  Y T +  L +  ++ EA   L  M+   C P    ++
Sbjct: 132 DDALALFRAMTEK--KIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCVPKPGCYN 189

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGF--------------------------------- 320
             L  L K +    A +L+  M G G                                  
Sbjct: 190 AILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQMKSA 249

Query: 321 NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMI 367
            L P  ++YN +I  L     V   +R   +M+  G  P+S TY ++
Sbjct: 250 GLAPREVIYNTLIDALNRAGRVSEAYRLLQEMISRGLSPNSRTYALM 296



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 85/210 (40%), Gaps = 2/210 (0%)

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
           V+ +   +  L +  ++ +A + + VM    CFP    F+  +D L K   S  A    +
Sbjct: 10  VVTFGILVDGLCKANRLTDAFELVEVMAERGCFPNALVFNGIMDALCKEGRSAEAYGYIE 69

Query: 314 IMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 373
            M  +G +  P ++ YN +I   C  + +        +M   G  P+ +TYN     L K
Sbjct: 70  TMRSMGVS--PTIVTYNILIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGLCK 127

Query: 374 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 433
             +V +    F  M + + +       T I  L  A +   A  + + +  +G +P    
Sbjct: 128 YGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCVPKPGC 187

Query: 434 ANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
            N +L  L    R+++  +  + M    IL
Sbjct: 188 YNAILSWLCKGSRINEAHKLFKRMTGSGIL 217



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 57/140 (40%)

Query: 323 MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
           +P ++ +  ++  LC  + + + F   + M   G FP++L +N I + L K  R  E   
Sbjct: 7   IPTVVTFGILVDGLCKANRLTDAFELVEVMAERGCFPNALVFNGIMDALCKEGRSAEAYG 66

Query: 383 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 442
           +   M      PT +     I      ++   A+EI   +   G  P   + N  L GL 
Sbjct: 67  YIETMRSMGVSPTIVTYNILIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGLC 126

Query: 443 NLGRLSDVRRFAEEMLNRRI 462
             G++ D       M  ++I
Sbjct: 127 KYGKVDDALALFRAMTEKKI 146


>gi|125600921|gb|EAZ40497.1| hypothetical protein OsJ_24952 [Oryza sativa Japonica Group]
          Length = 766

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 157/370 (42%), Gaps = 8/370 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG-AGKYDEAVMSFDV 172
           A+  +V    + GRF       R M + GV  ++ T+  +   Y   A  + E V     
Sbjct: 156 AYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVELVAS 215

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEG 231
           M  HGV  D    N+L+S  CR+      A +  + +K    +PD  +F  LL+ + K  
Sbjct: 216 MKEHGVAPDRYTYNTLISC-CRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKAR 274

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
             +EA +   EM ER    P  V+ Y + + + ++   +++A+   + M+ +   P +  
Sbjct: 275 RHDEAIEVIQEM-ERVGC-PPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVT 332

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           ++  +  L +      A+  +D MV  G    PNL  YNA+I +         +   FD+
Sbjct: 333 YTTLISGLDRAGKIDAAIVEYDEMVRNGCK--PNLCTYNALIKMHGVRGKFPEMMAVFDE 390

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
               G  PD +T+N +     +N    EV   F EM K  + P      + I+       
Sbjct: 391 FRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGL 450

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK 471
            ++A++I+  ++E GI P  ++ N +L  L   GR     +   EM  R     E +   
Sbjct: 451 FDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSS 510

Query: 472 LKKAFYNESR 481
           L  A+ N  R
Sbjct: 511 LLHAYANAKR 520



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/347 (20%), Positives = 143/347 (41%), Gaps = 13/347 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           WN ++ V G+NG   ++    + MK+ G +    T+ S+  SY   G +D A+  +  M 
Sbjct: 403 WNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMM 462

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G+  DV   N++LSA+ R          F    ++   PD  S++ LL  +     ++
Sbjct: 463 EAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLD 522

Query: 235 E----ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           +    ++  + E +E   W        +T ++   +   + EA K    ++ + C   + 
Sbjct: 523 KMKALSDDIYSERIEPHNW------LVKTLVLVNSKVNNLAEAEKAFLELRQKRCSLDIN 576

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
             +  + I  K        ++  +M     NL  +   YN+++ +     D +       
Sbjct: 577 VLNAMVSIYGKNRMVRKVEKILSLMKESAINL--SAATYNSLMHMYSRLGDCEKCENILT 634

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
           ++   G  PD  +YN +     +  ++ E  + F EM  +  +P  +     +   +   
Sbjct: 635 EIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNS 694

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
             E AIE+  Y++  G  P E + N ++ G    G+L+D + F   +
Sbjct: 695 MFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKLTDAKIFVSNL 741



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 62/283 (21%), Positives = 117/283 (41%), Gaps = 7/283 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N ++    +   +++       MK  G      TF S+ D Y  A ++DEA+     
Sbjct: 226 YTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQE 285

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEG 231
           M   G    VV  NSL+S+  + +    +A+     ++ K + PD  ++  L+ G ++ G
Sbjct: 286 MERVGCPPSVVTYNSLISSYVK-DGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAG 344

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            ++ A   + EMV R    P          +  +RGK   E +      +     P +  
Sbjct: 345 KIDAAIVEYDEMV-RNGCKPNLCTYNALIKMHGVRGK-FPEMMAVFDEFRSAGFVPDIVT 402

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           ++  L +  +    +    ++  M   G+  +P    Y ++I         D   + + +
Sbjct: 403 WNTLLAVFGQNGLDSEVSGVFKEMKKAGY--IPERDTYVSLISSYSRCGLFDLAMQIYKR 460

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
           M+  G +PD  TYN +   L +  R  + EK F EM + + +P
Sbjct: 461 MMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKP 503



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/280 (20%), Positives = 115/280 (41%), Gaps = 5/280 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++DV GK  R ++    ++ M+  G   S+ T+ S+  SY   G  ++AV     M 
Sbjct: 263 FNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEME 322

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
           + G++ DVV   +L+S + R     +  +E+   V+    P+  ++  L++     G   
Sbjct: 323 VKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFP 382

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           E    F E   R       ++ + T L    +     E     + MK     P    + +
Sbjct: 383 EMMAVFDEF--RSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVS 440

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
            +    +      A+Q++  M+  G  + P++  YNAV+  L      +   + F +M  
Sbjct: 441 LISSYSRCGLFDLAMQIYKRMMEAG--IYPDVSTYNAVLSALARGGRWEQAEKLFAEMEE 498

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
               PD  +Y+ +       KR+ +++    ++     +P
Sbjct: 499 RDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEP 538



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 51/265 (19%), Positives = 102/265 (38%), Gaps = 7/265 (2%)

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
           +HG  + V+    +L+   R   +  R  E    +     PD  ++  L+  + + G   
Sbjct: 114 LHG--EGVLHHPRVLATAIRVMARAGRLAEASALLDAAPGPDAGAYTALVSAFSRAGRFR 171

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIR-GKQVDEALKFLRVMKGENCFPTLKFFS 293
           +A   F  MV+        ++ Y   L    +      E ++ +  MK     P    ++
Sbjct: 172 DAVAVFRRMVD--SGVQPAIVTYNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYN 229

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +    +      A Q++D M   GF   P+ + +N+++ +       D       +M 
Sbjct: 230 TLISCCRRRALYKEAAQVFDEMKASGFE--PDKVTFNSLLDVYGKARRHDEAIEVIQEME 287

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G  P  +TYN +    +K+  + +      EM     +P  +   T I+ L  A + +
Sbjct: 288 RVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKID 347

Query: 414 IAIEIWNYILENGILPLEASANELL 438
            AI  ++ ++ NG  P   + N L+
Sbjct: 348 AAIVEYDEMVRNGCKPNLCTYNALI 372



 Score = 46.2 bits (108), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 80/215 (37%), Gaps = 11/215 (5%)

Query: 248 EWNPEHVLAYETFLITLIR----GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303
           E + E VL +   L T IR      ++ EA   L    G    P    ++  +    +  
Sbjct: 113 ELHGEGVLHHPRVLATAIRVMARAGRLAEASALLDAAPG----PDAGAYTALVSAFSRAG 168

Query: 304 DSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND-DVDNVFRFFDQMVFHGAFPDSL 362
               AV ++  MV  G  + P ++ YN V+ +          V      M  HG  PD  
Sbjct: 169 RFRDAVAVFRRMVDSG--VQPAIVTYNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRY 226

Query: 363 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 422
           TYN +  C  +     E  + F EM  + ++P  +   + + +   A   + AIE+   +
Sbjct: 227 TYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEM 286

Query: 423 LENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
              G  P   + N L+      G L       +EM
Sbjct: 287 ERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEM 321


>gi|413920478|gb|AFW60410.1| hypothetical protein ZEAMMB73_296337 [Zea mays]
          Length = 676

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/379 (21%), Positives = 160/379 (42%), Gaps = 11/379 (2%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNA-VRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           G+G + + Y    ++D L K G  E+ +   ++++K      ++ T+  +   YC  GK 
Sbjct: 279 GKGLKPNVYTHTSLIDGLCKIGWMERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKL 338

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAI 222
             A M    M   G+  +     +L+   C+      RA E +N++K +   P+  ++  
Sbjct: 339 ARAEMLLGRMVEQGLAPNTNTYTTLIHGHCKG-GSFDRAFELMNKMKLEGFLPNIYTYNA 397

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           ++ G+ K+G ++EA K    M      + + V  Y   +    +   +  AL   + M  
Sbjct: 398 IIGGFCKKGKIQEAYKVL-RMATSQGLHLDKV-TYTILITEHCKQGHITCALDLFKQMAE 455

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
           ++C P +  ++  + +  +      + QL+D  + IG  L+P    Y ++I   C    +
Sbjct: 456 KSCHPDIHTYTTIIAMYCQQRQMEQSQQLFDKCLSIG--LVPTKQTYTSMIAGYCRLGKL 513

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
            +  + F++MV HG  PDS+TY  +   L K  R+ E    F  M+     P  +   T 
Sbjct: 514 TSALKVFERMVQHGCLPDSITYGALISSLCKESRLEEARALFETMLDKHLVPCDVTRVTL 573

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
                  D+  IA+   + + +        +A+ L+  L  +G L     F + +L++  
Sbjct: 574 AYEYCRRDKITIAVSFLDRLDKR---QQAHTADALVRKLSTVGNLDAASLFLKNVLDKHY 630

Query: 463 LIYEVTMHKLKKAFYNESR 481
            +   T      + Y  +R
Sbjct: 631 AVDHATYTSFINSCYESNR 649



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/392 (21%), Positives = 152/392 (38%), Gaps = 46/392 (11%)

Query: 104 WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGK 162
           WA +G  L      ++V    + GRF  + +  R M E G   ++  +++  D  C  G 
Sbjct: 208 WA-QGFCLDSATCTVVVRAFCRQGRFRNVTDLFRRMSEMGTPPNMVNYSAWIDGLCERGY 266

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKI-VDPDGDSF 220
             +A    + M   G++ +V    SL+  +C+      RA   FL  VK     P+  ++
Sbjct: 267 VKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCKI-GWMERAFRLFLKLVKSSSYKPNVHTY 325

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
            +++ G+ KEG +  A    G MVE  +    +   Y T +    +G   D A + +  M
Sbjct: 326 TVMIGGYCKEGKLARAEMLLGRMVE--QGLAPNTNTYTTLIHGHCKGGSFDRAFELMNKM 383

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
           K E                                   GF  +PN+  YNA+IG  C   
Sbjct: 384 KLE-----------------------------------GF--LPNIYTYNAIIGGFCKKG 406

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
            +   ++        G   D +TY ++     K   +      F +M +    P      
Sbjct: 407 KIQEAYKVLRMATSQGLHLDKVTYTILITEHCKQGHITCALDLFKQMAEKSCHPDIHTYT 466

Query: 401 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           T I M     + E + ++++  L  G++P + +   ++ G   LG+L+   +  E M+  
Sbjct: 467 TIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRLGKLTSALKVFERMVQH 526

Query: 461 RILIYEVTMHKLKKAFYNESR--SMRDIFDSL 490
             L   +T   L  +   ESR    R +F+++
Sbjct: 527 GCLPDSITYGALISSLCKESRLEEARALFETM 558


>gi|359481393|ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Vitis vinifera]
          Length = 625

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/355 (22%), Positives = 154/355 (43%), Gaps = 7/355 (1%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKY 163
           A +G + +   +N  ++   K      +   + +M+++GV  ++ T+  +   +   GK 
Sbjct: 252 AAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKI 311

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
           +EA   F+ M   G+E DV    S++S  CR  N     + F     K + P   ++  L
Sbjct: 312 EEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGAL 371

Query: 224 LEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           + G  K G +E A     EM  +  + NP   + + T +        VDEAL+   VM+ 
Sbjct: 372 IHGVCKAGQMEAAQMLVNEMQGKGIDLNP---VIFNTLIDGYCESGMVDEALRLQVVMEK 428

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
           +     +  +++    L KLN    A  L   MV  G +  PN + +  +I + C   + 
Sbjct: 429 KGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVS--PNTMSFTTLIDIYCKEGNF 486

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
               R F +M   G  P+ +TYN++ +   K   + E  K   E+      P    C + 
Sbjct: 487 VEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSL 546

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           I       + ++A+++++ + + G++P   +   ++ GL   GR  +  +  +EM
Sbjct: 547 IHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEM 601



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 122/261 (46%), Gaps = 5/261 (1%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSF 170
           S + +  ++  + K G+ E     V  M+  G+ L+   F ++ D YC +G  DEA+   
Sbjct: 364 SAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQ 423

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
            VM   G+E DV A NS+ S +C+   +        + V++ V P+  SF  L++ + KE
Sbjct: 424 VVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKE 483

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           GN  EA + F EM E+   N  +++ Y   +    +   + EA K    ++     P + 
Sbjct: 484 GNFVEAKRVFREMEEK--GNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVY 541

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
             ++ +           A++L+D M   G  L+PN++ Y A+I  L  +   +  F+ +D
Sbjct: 542 TCTSLIHGECIDGKVDMALKLFDEMPQRG--LVPNVVTYTAMISGLSKDGRSEEAFKLYD 599

Query: 351 QMVFHGAFPDSLTYNMIFECL 371
           +M   G  PD   Y+ +   L
Sbjct: 600 EMKETGLTPDDTVYSSLVGSL 620



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 63/314 (20%), Positives = 125/314 (39%), Gaps = 6/314 (1%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F  +F  Y     + EA+ +F+ M   G   D  +    L A+ R+  Q    L F  R+
Sbjct: 158 FDLLFRVYADNKMFGEALEAFEHMEKKGFHIDERSCLVYLLAL-RRGGQVDSCLRFFRRM 216

Query: 210 KKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
             + V+    S  I+L+G  K G+VE   K   E+  +      +V+ Y  F+    +  
Sbjct: 217 VNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAK--GVKANVVTYNAFIEGYFKRL 274

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
            +    + L +M+ E     +  ++  +     +     A +L++ M   G     ++ +
Sbjct: 275 DLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIE--ADVYV 332

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           Y ++I   C + +V      FD+M   G  P + TY  +   + K  ++   +   +EM 
Sbjct: 333 YTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQ 392

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
                  P+   T I    ++   + A+ +   + + G+     + N +  GL  L R  
Sbjct: 393 GKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKD 452

Query: 449 DVRRFAEEMLNRRI 462
           + +     M+ R +
Sbjct: 453 EAKGLLFSMVERGV 466


>gi|255660918|gb|ACU25628.1| pentatricopeptide repeat-containing protein [Xeroaloysia
           ovatifolia]
          Length = 484

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 102/399 (25%), Positives = 176/399 (44%), Gaps = 25/399 (6%)

Query: 77  IIPTPD--LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLM--VDVLGKNGRFEQM 132
           ++P+ D  LV+ VL  S  S   A+ FFRW  R           +  +++LG+  +    
Sbjct: 6   LVPSFDHELVYNVLHGSKTS-EHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +  M + G+      +  + DSY  AG   E+V  F  M   GVE+   + ++L   
Sbjct: 65  RCILLDMPKKGLEWDEDMWVLMIDSYGKAGIVQESVKLFQKMEELGVERTTKSYDTLFKV 124

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           I R+         F   + + ++P   +F +++ G+   G VE AN+ F +M  R E +P
Sbjct: 125 ILRRGRFMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFDDMKSR-EISP 183

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           + V+ Y T +    R K++DEA K+   MKG N  PT+  ++  +   V ++    A++L
Sbjct: 184 D-VITYNTMINGYYRVKKMDEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242

Query: 312 WDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECL 371
            + M G G  + PN I Y+ ++  LCN + +        +MV     P   T N IF  L
Sbjct: 243 VEEMKGYG--IKPNAITYSTLLPGLCNAEKMSEARSVLKEMVDKYIAP---TDNSIFMRL 297

Query: 372 I----KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 427
           I    K   +         MI+        +    I     AD+ + A+++ + ++E  I
Sbjct: 298 ISGQCKTGNLDAAADVLKAMIRLSVPTEAGHYGVLIENFCKADQHDKAVKLLDKLIEKDI 357

Query: 428 -------LPLEASA-NELLVGLRNLGRLSDVRRFAEEML 458
                  L +E SA N ++  L N G+ +       ++L
Sbjct: 358 ILRPQSTLHMEPSAYNPMIEYLCNNGQTAKAEALVRQLL 396



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 112/262 (42%), Gaps = 47/262 (17%)

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM----VERFEWNPEHVLAYETF 260
            L+  KK ++ D D + ++++ + K G V+E+ K F +M    VER         +Y+T 
Sbjct: 68  LLDMPKKGLEWDEDMWVLMIDSYGKAGIVQESVKLFQKMEELGVER------TTKSYDTL 121

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF 320
              ++R  +   A ++   M  E   PT   F+               V +W      GF
Sbjct: 122 FKVILRRGRFMMAKRYFNKMLSEGIEPTRHTFN---------------VMIW------GF 160

Query: 321 NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEV 380
            L                +  V+   RFFD M      PD +TYN +     + K++ E 
Sbjct: 161 FL----------------SGKVETANRFFDDMKSREISPDVITYNTMINGYYRVKKMDEA 204

Query: 381 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 440
           EK+F EM     +PT +   T I   +  D+ + A+ +   +   GI P   + + LL G
Sbjct: 205 EKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPG 264

Query: 441 LRNLGRLSDVRRFAEEMLNRRI 462
           L N  ++S+ R   +EM+++ I
Sbjct: 265 LCNAEKMSEARSVLKEMVDKYI 286



 Score = 38.9 bits (89), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 84/181 (46%), Gaps = 23/181 (12%)

Query: 135 AVRVMKEDGVLSLPT----FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV------- 183
           A  V+K    LS+PT    +  + +++C A ++D+AV   D +    +E+D++       
Sbjct: 310 AADVLKAMIRLSVPTEAGHYGVLIENFCKADQHDKAVKLLDKL----IEKDIILRPQSTL 365

Query: 184 -----AVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANK 238
                A N ++  +C    QT++A   + ++ K+   D  +   L+ G  +EG+ + A +
Sbjct: 366 HMEPSAYNPMIEYLC-NNGQTAKAEALVRQLLKLGVQDPTALNTLVRGHSQEGSPDSAFE 424

Query: 239 TFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDI 298
               M+ R + + E   AY++ + + ++  +  +A   L  M   +  P    F + ++ 
Sbjct: 425 LLKIMLRR-KVDSEKS-AYDSLVQSYLKKNEPADAKXALDSMIENDHLPDSSLFRSVMES 482

Query: 299 L 299
           L
Sbjct: 483 L 483


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 93/373 (24%), Positives = 160/373 (42%), Gaps = 42/373 (11%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
            RG R   Y +  +++ L K G        ++ M+E G   ++ T+++I DS+    + +
Sbjct: 196 ARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVN 255

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAIL 223
           EA+  F  M + G+  D+   NSL+  +C   +Q   A   LN ++ + + PD  +F +L
Sbjct: 256 EALDIFSYMKVKGISPDIFTYNSLIQGLC-NFSQWKEASALLNEMRSLNIMPDIVTFNVL 314

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           ++   KEG V EA      M E     P+ V+ Y + +       +V EA K    M  +
Sbjct: 315 VDTICKEGKVSEAQGVLKTMTE-MGVEPD-VVTYSSLMYGYSLRSEVVEARKLFDAMITK 372

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN----- 338
            C P +  ++  ++   K+     A QL++ M+  G  L PN + YN +I  LC      
Sbjct: 373 GCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQG--LTPNNVSYNTLIHGLCQLGSLR 430

Query: 339 -----------NDDVDNVFR-------FFDQMVFHGAF------------PDSLTYNMIF 368
                      N ++ N+F        F  Q  F  AF            P+ + YN++ 
Sbjct: 431 EARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILI 490

Query: 369 ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 428
           + + K+  + +  K F E+     QP      T I  L      + A+E +  + E+G  
Sbjct: 491 DAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCP 550

Query: 429 PLEASANELLVGL 441
           P E S N ++ G 
Sbjct: 551 PDEISYNVIIRGF 563



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 92/424 (21%), Positives = 184/424 (43%), Gaps = 21/424 (4%)

Query: 77  IIPTPDLVHEVLQLS--YDSPSSAVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQM 132
           II    L+  ++++   YD+  S       AG    LSP  Y  +++++      R +  
Sbjct: 97  IIQFTKLLSAIVKMGQYYDTVISLTKQMELAG----LSPNIYTLSILINCFSHLQRVDLA 152

Query: 133 WNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
           ++ + +++K     ++ TF ++ +  C  GK+ +A+  FD M   G   DV    ++++ 
Sbjct: 153 FSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIING 212

Query: 192 ICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
           +C+   +T+ A   L ++++    P+  +++ +++   K+  V EA   F  M  + +  
Sbjct: 213 LCKI-GETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYM--KVKGI 269

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
              +  Y + +  L    Q  EA   L  M+  N  P +  F+  +D + K    + A  
Sbjct: 270 SPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQG 329

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
           +   M  +G    P+++ Y++++       +V    + FD M+  G  PD  +YN++   
Sbjct: 330 VLKTMTEMGVE--PDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILING 387

Query: 371 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 430
             K KR+ E ++ F+EMI     P  ++  T I  L        A  ++  +  NG LP 
Sbjct: 388 YCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPN 447

Query: 431 EASANELLVGLRNLGRLSDVRRFAEEMLNR----RILIYEVTMHKLKKAFYNESRSMRDI 486
             + + LL G    G      R    M +      +++Y + +  + K+     R  R +
Sbjct: 448 LFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKS--GNLRDARKL 505

Query: 487 FDSL 490
           F  L
Sbjct: 506 FSEL 509



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 150/335 (44%), Gaps = 10/335 (2%)

Query: 98  AVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           A+D F +  + + +SP  + +N ++  L    ++++    +  M+   ++  + TF  + 
Sbjct: 257 ALDIFSYM-KVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLV 315

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC-RQENQTSRALEFLNRVKKIV 213
           D+ C  GK  EA      M+  GVE DVV  +SL+     R E   +R L F   + K  
Sbjct: 316 DTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKL-FDAMITKGC 374

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
            PD  S+ IL+ G+ K   ++EA + F EM+ +    P +V +Y T +  L +   + EA
Sbjct: 375 KPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQ-GLTPNNV-SYNTLIHGLCQLGSLREA 432

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
               + M      P L  +S  LD   K      A +L+  M        PNL+MYN +I
Sbjct: 433 RNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSK--PNLVMYNILI 490

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
             +C + ++ +  + F ++   G  P++  Y  I   L K   + E  + F  M ++   
Sbjct: 491 DAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCP 550

Query: 394 PTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 428
           P  ++    I   L   +   A+++   + + G +
Sbjct: 551 PDEISYNVIIRGFLHHKDESRAVQLIGEMRDKGFI 585


>gi|224083888|ref|XP_002307160.1| predicted protein [Populus trichocarpa]
 gi|222856609|gb|EEE94156.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 142/316 (44%), Gaps = 8/316 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF+ + +     G  D AV  F  M+  G + D++  N+L+  +C   N+   +   L  
Sbjct: 326 TFSIVINGLIKTGDLDLAVGLFRDMARIGCKPDLLLYNNLIDGLC-TSNRLQESCGLLQE 384

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR- 266
           +++  ++P   +   +     +  ++  A     +M  R   +   +    + +  L + 
Sbjct: 385 MEESGIEPTSFTNNCIFGCLCRRHDISGALHLLKKM--RIHGHVPWIKHSTSLVKELCKH 442

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNL 326
           GK+V EA KFL  M  E   P +  +S  LD L+K+ +   A++L+  +   G+   P++
Sbjct: 443 GKEV-EACKFLVDMAEEGFQPDIVAYSACLDGLIKIQEVDQALKLFQDICAQGY--CPDV 499

Query: 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 386
           I YN +I  LC    +        +M   G  P ++TYN + + L K   + E   F   
Sbjct: 500 IAYNILIKGLCKTQRIAEAQNLLHEMEEKGLVPSAVTYNTLIDGLCKTDHLEEAMLFLSM 559

Query: 387 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 446
           MI+ E +P  +  +T I  L +A  P+ A+ +WN +   G  P   +    + GL N GR
Sbjct: 560 MIEKEREPNVITYSTLINGLCNAGRPDDALVLWNEMGRKGCTPSSIAYMAFIHGLSNCGR 619

Query: 447 LSDVRRFAEEMLNRRI 462
            ++   +  EM  R +
Sbjct: 620 PNEALVYLREMEEREM 635



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 102/429 (23%), Positives = 177/429 (41%), Gaps = 62/429 (14%)

Query: 98  AVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDS 156
           A+D F        +  Y ++++V    K G+ ++    +  M+E  V L+  TF S+   
Sbjct: 120 ALDVFNEIHDRGWVDEYVFSILVLAFSKWGKVDKACELIETMEEKNVRLNKKTFCSLIYG 179

Query: 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDP 215
           +    + D+A+  FD M   G   D+   + ++  +C  ++   +AL   + +K   + P
Sbjct: 180 FVKESRVDKALHLFDKMKKSGFTPDISLYDVIIGGLCVNKD-VKKALCLYSEMKGFKIQP 238

Query: 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE-HVLAYETFLITLIRGKQVDEAL 274
           D      L+  + KE   EE    F EM E  + +P+   L Y + L +L+    V +A 
Sbjct: 239 DVKIVTKLISSFSKE---EELTCFFEEMHE--DMDPKASTLLYNSVLNSLVDNGSVHKAY 293

Query: 275 KFLRVMKGENCF----------------PTLKFFSNALDILVKLNDSTHAVQLWDIMVGI 318
             L+ +   NC                 P    FS  ++ L+K  D   AV L+  M  I
Sbjct: 294 HLLQAITIGNCIGDGEIGKLFRGKAMVPPNSTTFSIVINGLIKTGDLDLAVGLFRDMARI 353

Query: 319 GFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC-------- 370
           G    P+L++YN +I  LC ++ +        +M   G  P S T N IF C        
Sbjct: 354 GCK--PDLLLYNNLIDGLCTSNRLQESCGLLQEMEESGIEPTSFTNNCIFGCLCRRHDIS 411

Query: 371 ----LIKNKRVH---------------------EVE--KFFHEMIKNEWQPTPLNCATAI 403
               L+K  R+H                     EVE  KF  +M +  +QP  +  +  +
Sbjct: 412 GALHLLKKMRIHGHVPWIKHSTSLVKELCKHGKEVEACKFLVDMAEEGFQPDIVAYSACL 471

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
             L+   E + A++++  I   G  P   + N L+ GL    R+++ +    EM  + ++
Sbjct: 472 DGLIKIQEVDQALKLFQDICAQGYCPDVIAYNILIKGLCKTQRIAEAQNLLHEMEEKGLV 531

Query: 464 IYEVTMHKL 472
              VT + L
Sbjct: 532 PSAVTYNTL 540



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/335 (23%), Positives = 148/335 (44%), Gaps = 8/335 (2%)

Query: 98  AVDFFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFD 155
           AV  FR   R G +     +N ++D L  + R ++    ++ M+E G+     T   IF 
Sbjct: 343 AVGLFRDMARIGCKPDLLLYNNLIDGLCTSNRLQESCGLLQEMEESGIEPTSFTNNCIFG 402

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDP 215
             C       A+     M +HG    +    SL+  +C+   +       ++  ++   P
Sbjct: 403 CLCRRHDISGALHLLKKMRIHGHVPWIKHSTSLVKELCKHGKEVEACKFLVDMAEEGFQP 462

Query: 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK 275
           D  +++  L+G  K   V++A K F ++  +  + P+ V+AY   +  L + +++ EA  
Sbjct: 463 DIVAYSACLDGLIKIQEVDQALKLFQDICAQ-GYCPD-VIAYNILIKGLCKTQRIAEAQN 520

Query: 276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGL 335
            L  M+ +   P+   ++  +D L K +    A+    +M  I     PN+I Y+ +I  
Sbjct: 521 LLHEMEEKGLVPSAVTYNTLIDGLCKTDHLEEAMLFLSMM--IEKEREPNVITYSTLING 578

Query: 336 LCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP- 394
           LCN    D+    +++M   G  P S+ Y      L    R +E   +  EM + E +P 
Sbjct: 579 LCNAGRPDDALVLWNEMGRKGCTPSSIAYMAFIHGLSNCGRPNEALVYLREMEEREMKPD 638

Query: 395 TPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
           T +        L+D+++P +A EI   +++ G  P
Sbjct: 639 TYVYVGLLNAFLVDSNQP-LAFEILQEMVDKGKFP 672



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/244 (22%), Positives = 105/244 (43%), Gaps = 7/244 (2%)

Query: 119 MVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           +V  L K+G+  +    +  M E+G    +  +++  D      + D+A+  F  +   G
Sbjct: 435 LVKELCKHGKEVEACKFLVDMAEEGFQPDIVAYSACLDGLIKIQEVDQALKLFQDICAQG 494

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEA 236
              DV+A N L+  +C+ + + + A   L+ ++ K + P   ++  L++G  K  ++EEA
Sbjct: 495 YCPDVIAYNILIKGLCKTQ-RIAEAQNLLHEMEEKGLVPSAVTYNTLIDGLCKTDHLEEA 553

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
                 M+E+ E  P +V+ Y T +  L    + D+AL     M  + C P+   +   +
Sbjct: 554 MLFLSMMIEK-EREP-NVITYSTLINGLCNAGRPDDALVLWNEMGRKGCTPSSIAYMAFI 611

Query: 297 DILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG 356
             L        A+     M      + P+  +Y  ++     + +    F    +MV  G
Sbjct: 612 HGLSNCGRPNEALVYLREMEE--REMKPDTYVYVGLLNAFLVDSNQPLAFEILQEMVDKG 669

Query: 357 AFPD 360
            FPD
Sbjct: 670 KFPD 673


>gi|147767583|emb|CAN60200.1| hypothetical protein VITISV_039678 [Vitis vinifera]
          Length = 525

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 111/462 (24%), Positives = 191/462 (41%), Gaps = 26/462 (5%)

Query: 34  RPTRPRFPTHLDAPYISSSARIICEIL--AHASSDDIESALACTGIIPTPDLVHEVLQLS 91
           +P      T L +   S  A +I +IL   H     +ES+L   GI  +  LVH+ L   
Sbjct: 34  QPPDDALSTGLPSLQPSYDADLISKILLQHHNPFHAMESSLQLNGIALSTHLVHQTLLRL 93

Query: 92  YDSPSSAVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLP 148
            +    A+ FF WA      S    ++NL++D+L K  +F+  W  +  M ++ +  +  
Sbjct: 94  RNVSKIALSFFLWAKDQAHHSHDVVSYNLIIDILAKVRQFDVAWQFIIEMDQNSLEPTST 153

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN--SLLSAICRQENQTSRALEFL 206
           TF  +      AG   +AV +FD MS   VE+D  + +   LL  + +       A +  
Sbjct: 154 TFRILIRRSVSAGLTRQAVRAFDDMSCF-VEKDADSDDFCYLLDTLSKY-GYVKLASQIF 211

Query: 207 NRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
           N+ K   + +   + IL+ GW K   V  A +  GEMVER      +V+ Y   L  + R
Sbjct: 212 NQRKFKFEANAKMYTILIYGWCKINRVSIAERLLGEMVER--GJXANVVTYNVLLNGICR 269

Query: 267 G----------KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
                      + + +A K L  M+     P +  +S  + +  + +     +    +M 
Sbjct: 270 XASLHPDDRFERTIRDAEKVLDEMRQXGIEPDVTSYSIVIHVYSRAHKPELTLDKLRMMK 329

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
             G  + P +  Y +V+  LC+   +++       MV  G  P + TYN  F+     K 
Sbjct: 330 DKG--IWPTVATYTSVVKCLCSCGRLEDAEELVSDMVKDGVSPSAATYNCFFKEYRGRKD 387

Query: 377 VHEVEKFFHEMIKNEWQPTP--LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 434
                + + +M K E+   P        + M +  +  EI  EIW+ +  +G  P   S 
Sbjct: 388 SDNALRLYRKM-KEEYSCLPDMHTYNILVGMFVKLNRMEIVQEIWDDMKTSGAGPDLDSY 446

Query: 435 NELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
             L+ GL    +  +   F  EM+ +  L  ++T   L +  
Sbjct: 447 TLLIHGLCEKQKWKEACHFFVEMIEKGYLPQKITFETLYRGL 488



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/241 (21%), Positives = 92/241 (38%), Gaps = 21/241 (8%)

Query: 259 TFLITLIRGKQVDEALKFLRVMKGENCFPTLKF----FSNALDILVKLNDSTHAVQLWDI 314
           TF I + R        + +R     +CF         F   LD L K      A Q+++ 
Sbjct: 154 TFRILIRRSVSAGLTRQAVRAFDDMSCFVEKDADSDDFCYLLDTLSKYGYVKLASQIFN- 212

Query: 315 MVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN 374
                F    N  MY  +I   C  + V    R   +MV  G   + +TYN++   + + 
Sbjct: 213 --QRKFKFEANAKMYTILIYGWCKINRVSIAERLLGEMVERGJXANVVTYNVLLNGICRX 270

Query: 375 KRVH----------EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 424
             +H          + EK   EM +   +P   + +  I +   A +PE+ ++    + +
Sbjct: 271 ASLHPDDRFERTIRDAEKVLDEMRQXGIEPDVTSYSIVIHVYSRAHKPELTLDKLRMMKD 330

Query: 425 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMR 484
            GI P  A+   ++  L + GRL D      +M+   +     T +     F+ E R  +
Sbjct: 331 KGIWPTVATYTSVVKCLCSCGRLEDAEELVSDMVKDGVSPSAATYN----CFFKEYRGRK 386

Query: 485 D 485
           D
Sbjct: 387 D 387


>gi|357502007|ref|XP_003621292.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124360248|gb|ABN08261.1| Pentatricopeptide repeat [Medicago truncatula]
 gi|355496307|gb|AES77510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 738

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 92/344 (26%), Positives = 157/344 (45%), Gaps = 20/344 (5%)

Query: 98  AVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQ---MWNAVRVMKEDGVLSLPTFASI 153
            VD F  +   G  +   A+N++ D L K G+ +    M + ++ M+ D  + +  + ++
Sbjct: 384 VVDMFEEFKESGLFIDRKAYNILFDALCKLGKVDDAVGMLDELKSMQLD--VDMKHYTTL 441

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS-RALEFLNRVK-K 211
            + Y   GK  EA   F  M   G + DVVA N L +   R  N+T   A++ LN ++ +
Sbjct: 442 INGYFLQGKPIEAQSLFKEMEERGFKPDVVAYNVLAAGFFR--NRTDFEAMDLLNYMESQ 499

Query: 212 IVDPDGDSFAILLEGWEKEGNVEEANKTF----GEMVE-RFEWNPEHVLAY-ETFLITLI 265
            V+P+  +  I++EG    G VEEA + F    GE VE   E     V  Y E  LI   
Sbjct: 500 GVEPNSTTHKIIIEGLCSAGKVEEAEEFFNWLKGESVEISVEIYTALVNGYCEAALIE-- 557

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN 325
           +  ++ EA   LR M   N  P+   +S     L    +   A  L+++ +  GF   P+
Sbjct: 558 KSHELKEAFILLRTMLEMNMKPSKVMYSKIFTALCCNGNMEGAHTLFNLFIHTGFT--PD 615

Query: 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 385
            + Y  +I   C  + +      F  M   G  PD++TY ++     K   + E  + F 
Sbjct: 616 AVTYTIMINGYCKTNCLPEAHELFKDMKERGITPDAVTYTIMINGYCKMNCLREAHELFK 675

Query: 386 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
           +M +   +P  +     I  LL++   EIA +++N +++ G+ P
Sbjct: 676 DMKERGIKPDVIAYTVIIKGLLNSGHTEIAFQLYNEMIDMGMTP 719



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 75/363 (20%), Positives = 129/363 (35%), Gaps = 63/363 (17%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV---------------- 144
           F R+   G   + Y + +++  L K G +E +      MKE GV                
Sbjct: 213 FVRFKSFGLIFNEYTYTIVIKALCKKGDWENVVRVFDEMKEAGVDDDSYCYATFIEGLCK 272

Query: 145 --------------------LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVA 184
                               +    + ++   +C   K DEA   F  M   G+  DV  
Sbjct: 273 NNRSDLGYAVLQDYRTRNAHVHKYAYTAVIRGFCNETKLDEAESVFLEMEKQGLVPDVYV 332

Query: 185 VNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244
             +L+   C   N       + + + + +  +   F+ +L   ++ G   E    F E  
Sbjct: 333 YCALVHGYCNSRNFDKALAVYKSMISRGIKTNCVIFSCILHCLDEMGRALEVVDMFEEFK 392

Query: 245 ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 304
           E   +      AY      L +  +VD+A+  L  +K       +K ++  ++       
Sbjct: 393 ESGLFIDRK--AYNILFDALCKLGKVDDAVGMLDELKSMQLDVDMKHYTTLINGYFLQGK 450

Query: 305 STHAVQLWDIMVGIGFNLMPNLIMYNAV-IGLLCNNDDVDNVFRFFDQMVFHGAFPDSLT 363
              A  L+  M   GF   P+++ YN +  G   N  D +      + M   G  P+S T
Sbjct: 451 PIEAQSLFKEMEERGFK--PDVVAYNVLAAGFFRNRTDFE-AMDLLNYMESQGVEPNSTT 507

Query: 364 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 423
           + +I E L    +V E E+FF+      W              L  +  EI++EI+   L
Sbjct: 508 HKIIIEGLCSAGKVEEAEEFFN------W--------------LKGESVEISVEIYT-AL 546

Query: 424 ENG 426
            NG
Sbjct: 547 VNG 549



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 67/360 (18%), Positives = 136/360 (37%), Gaps = 9/360 (2%)

Query: 98  AVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIF 154
           A+DF     +   + P   ++N +++ L K+   +         K  G + +  T+  + 
Sbjct: 173 AIDFLLQTRKNVVILPNILSFNFLINRLVKHDEVDMALCLFVRFKSFGLIFNEYTYTIVI 232

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIV 213
            + C  G ++  V  FD M   GV+ D     + +  +C+  N++      L   + +  
Sbjct: 233 KALCKKGDWENVVRVFDEMKEAGVDDDSYCYATFIEGLCKN-NRSDLGYAVLQDYRTRNA 291

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
                ++  ++ G+  E  ++EA   F EM E+    P+ V  Y   +      +  D+A
Sbjct: 292 HVHKYAYTAVIRGFCNETKLDEAESVFLEM-EKQGLVPD-VYVYCALVHGYCNSRNFDKA 349

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
           L   + M           FS  L  L ++  +   V +++     G  L  +   YN + 
Sbjct: 350 LAVYKSMISRGIKTNCVIFSCILHCLDEMGRALEVVDMFEEFKESG--LFIDRKAYNILF 407

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
             LC    VD+     D++       D   Y  +        +  E +  F EM +  ++
Sbjct: 408 DALCKLGKVDDAVGMLDELKSMQLDVDMKHYTTLINGYFLQGKPIEAQSLFKEMEERGFK 467

Query: 394 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 453
           P  +                 A+++ NY+   G+ P   +   ++ GL + G++ +   F
Sbjct: 468 PDVVAYNVLAAGFFRNRTDFEAMDLLNYMESQGVEPNSTTHKIIIEGLCSAGKVEEAEEF 527



 Score = 47.4 bits (111), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 85/205 (41%), Gaps = 22/205 (10%)

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEE 235
           HG   ++    S++  +C           + N  +K+     DS  + +    K+    E
Sbjct: 89  HGFSHNIQTYTSIIRILC-----------YYNLDRKL-----DSLFLDIIDHSKQDPCFE 132

Query: 236 ANKTFGEMVERF-EWNPEHVL--AYETFLITLIRGKQVDEALKFL-RVMKGENCFPTLKF 291
            N  F  + E   + N +H L  A+  F+   +      EA+ FL +  K     P +  
Sbjct: 133 INVLFDSLFEGVNDVNEDHYLFNAFNGFVKACVSQNMFVEAIDFLLQTRKNVVILPNILS 192

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           F+  ++ LVK ++   A+ L+  +    F L+ N   Y  VI  LC   D +NV R FD+
Sbjct: 193 FNFLINRLVKHDEVDMALCLF--VRFKSFGLIFNEYTYTIVIKALCKKGDWENVVRVFDE 250

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKR 376
           M   G   DS  Y    E L KN R
Sbjct: 251 MKEAGVDDDSYCYATFIEGLCKNNR 275


>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
           [Vitis vinifera]
 gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
          Length = 890

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 153/351 (43%), Gaps = 7/351 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            + +++  L  +GR  +  N    MKE G   ++ T+  + D  C   K DEA      M
Sbjct: 301 TYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEM 360

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGN 232
           S  G+   VV  N+L+   C+ E     A E L+ ++     P+  ++  L+ G  K+  
Sbjct: 361 SEKGLIPSVVTYNALIDGYCK-EGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRK 419

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           V +A     +M+ER + +P  ++ Y + +    +   ++ A + L +M      P    +
Sbjct: 420 VHKAMALLNKMLER-KLSPS-LITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTY 477

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           S  +D L K      A  L+D +   G     N ++Y A+I   C    +D  +   ++M
Sbjct: 478 SVFIDTLCKEGRVEEAGTLFDSVKAKGVK--ANEVIYTALIDGYCKVGKIDVAYSLLERM 535

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
           +     P+S TYN++ E L K K++ E      +M+    +PT +     I  +L     
Sbjct: 536 LNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAF 595

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
           + A++++N+++  G  P   +    L    + G L +V     +M    IL
Sbjct: 596 DHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGIL 646



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 126/281 (44%), Gaps = 4/281 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF ++ + YC  G   EA +    +   G+  D     SL+   CR +   +    FL  
Sbjct: 196 TFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIM 255

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
            +K    +  S+  L+ G  + G + EA K F +M E     P  V  Y   +  L    
Sbjct: 256 PQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTED-NCCPT-VRTYTVLIYALSGSG 313

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           +  EAL     MK + C P +  ++  +D L K N    A ++   M   G  L+P+++ 
Sbjct: 314 RKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKG--LIPSVVT 371

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           YNA+I   C    +D+ F   D M  +   P++ TYN +   L K ++VH+     ++M+
Sbjct: 372 YNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKML 431

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
           + +  P+ +   + I      ++ E A  + + + ENG++P
Sbjct: 432 ERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVP 472



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 79/353 (22%), Positives = 140/353 (39%), Gaps = 35/353 (9%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT-FASIFDSYCGAGKYDEAVMSFDV 172
           + +++ +D L K GR E+       +K  GV +    + ++ D YC  GK D A    + 
Sbjct: 475 WTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLER 534

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M       +    N L+  +C+++     +      +   V P   ++ IL+    K+G 
Sbjct: 535 MLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGA 594

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
            + A K F  MV    + P+ V  Y  FL        ++E    +  M  E   P L  +
Sbjct: 595 FDHALKVFNHMVS-LGYQPD-VCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTY 652

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN------------D 340
           +  +D   +L  +  A      MV  G    P+L + + +I  L +             D
Sbjct: 653 TVLIDGYARLGLTHRAFDFLKCMVDTGCK--PSLYIVSILIKNLSHENRMKETRSEIGID 710

Query: 341 DVDNVF------RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
            V N        + F++MV HG   D   Y  +     + +R+ E +   H M +    P
Sbjct: 711 SVSNTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSP 770

Query: 395 TP------LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 441
           +       L+C   + +  +      A+ + + ++ENG+LPL  S   L+ GL
Sbjct: 771 SEDIYNSLLDCCCKLGVYAE------AVRLVDAMVENGLLPLLESYKLLVCGL 817



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 82/376 (21%), Positives = 148/376 (39%), Gaps = 9/376 (2%)

Query: 110 RLSP--YAWNLMVDVLGKNGRF-EQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           ++SP  Y +N MV+   K G   E    A ++++        T+ S+   +C     D A
Sbjct: 189 QISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNA 248

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAILLE 225
              F +M   G +++ V+  +L+  +C +  + + AL+ F +  +    P   ++ +L+ 
Sbjct: 249 YEVFLIMPQKGCQRNEVSYTNLIHGLC-EAGRINEALKLFADMTEDNCCPTVRTYTVLIY 307

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
                G   EA   F EM E+      +V  Y   +  L +  ++DEA K L  M  +  
Sbjct: 308 ALSGSGRKVEALNLFNEMKEK--GCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGL 365

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P++  ++  +D   K      A ++ D+M        PN   YN +I  LC    V   
Sbjct: 366 IPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCG--PNTRTYNELICGLCKKRKVHKA 423

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
               ++M+     P  +TYN +     K   +    +    M +N   P     +  I  
Sbjct: 424 MALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDT 483

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 465
           L      E A  +++ +   G+   E     L+ G   +G++       E MLN   L  
Sbjct: 484 LCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPN 543

Query: 466 EVTMHKLKKAFYNESR 481
             T + L +    E +
Sbjct: 544 SYTYNVLIEGLCKEKK 559



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 85/448 (18%), Positives = 162/448 (36%), Gaps = 103/448 (22%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G   + + + +++D L K  + ++    +  M E G++ S+ T+ ++ D YC  G  D+
Sbjct: 328 KGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDD 387

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV---------------- 209
           A    D+M  +    +    N L+  +C++  +  +A+  LN++                
Sbjct: 388 AFEILDLMESNSCGPNTRTYNELICGLCKKR-KVHKAMALLNKMLERKLSPSLITYNSLI 446

Query: 210 ---KKIVD-----------------PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW 249
               K+ D                 PD  ++++ ++   KEG VEEA   F  +      
Sbjct: 447 HGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSV------ 500

Query: 250 NPEHVLAYETFLITLIRG----KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS 305
             + V A E     LI G     ++D A   L  M  + C P    ++  ++ L K    
Sbjct: 501 KAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKM 560

Query: 306 THAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV------------ 353
             A  L   M+ +G    P ++ Y  +IG +  +   D+  + F+ MV            
Sbjct: 561 KEASSLVAKMLTMGVK--PTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYT 618

Query: 354 --FH---------------------GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 390
              H                     G  PD +TY ++ +   +    H    F   M+  
Sbjct: 619 AFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDT 678

Query: 391 EWQPTPLNCATAITMLLDAD------------------EPEIAIEIWNYILENGILPLEA 432
             +P+    +  I  L   +                  E EIA++++  ++E+G     +
Sbjct: 679 GCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNTLEYEIALKLFEKMVEHGCTIDVS 738

Query: 433 SANELLVGLRNLGRLSDVRRFAEEMLNR 460
               L+ G     RL + +     M  R
Sbjct: 739 IYGALIAGFCQQERLEEAQGLVHHMKER 766



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 103/245 (42%), Gaps = 4/245 (1%)

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
           F++ P  +  Y T L++L +   +DE       +      P +  F+  ++   K+ +  
Sbjct: 153 FKFKPT-LRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVV 211

Query: 307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM 366
            A      +V  G  L P+   Y ++I   C N  VDN +  F  M   G   + ++Y  
Sbjct: 212 EAELYASKIVQAG--LHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTN 269

Query: 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 426
           +   L +  R++E  K F +M ++   PT       I  L  +     A+ ++N + E G
Sbjct: 270 LIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKG 329

Query: 427 ILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDI 486
             P   +   L+ GL    ++ + R+   EM  + ++   VT + L   +  E   + D 
Sbjct: 330 CEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGM-IDDA 388

Query: 487 FDSLE 491
           F+ L+
Sbjct: 389 FEILD 393



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 67/309 (21%), Positives = 119/309 (38%), Gaps = 21/309 (6%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G + +   + +++  + K+G F+        M   G    + T+ +   +Y   G  +E 
Sbjct: 574 GVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEV 633

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLE 225
                 M+  G+  D+V    L+    R    T RA +FL   V     P     +IL++
Sbjct: 634 DDVIAKMNEEGILPDLVTYTVLIDGYARL-GLTHRAFDFLKCMVDTGCKPSLYIVSILIK 692

Query: 226 GWEKEGNVEEANKTFGE-----------MVERFEWNPEH-----VLAYETFLITLIRGKQ 269
               E  ++E     G             ++ FE   EH     V  Y   +    + ++
Sbjct: 693 NLSHENRMKETRSEIGIDSVSNTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQER 752

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY 329
           ++EA   +  MK     P+   +++ LD   KL     AV+L D MV  G  L+P L  Y
Sbjct: 753 LEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENG--LLPLLESY 810

Query: 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389
             ++  L      +     F  ++  G   D + + ++ + L+K   V E  +    M +
Sbjct: 811 KLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLLKRDLVDECSELIDIMEE 870

Query: 390 NEWQPTPLN 398
              QP PL 
Sbjct: 871 KGCQPNPLT 879


>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
          Length = 684

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/378 (20%), Positives = 154/378 (40%), Gaps = 36/378 (9%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF  +   +C  G  + A+   + MS HG   +    N +++ IC+Q  +   A +FLN 
Sbjct: 287 TFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQ-GRVDDAFQFLNN 345

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           +      PD  S+  +L+G  +    E+A +   EMV +    P + + + TF+  L + 
Sbjct: 346 MGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRK--NCPPNEVTFNTFICILCQK 403

Query: 268 KQVDEALKFLRVMKGENC-------------FPTLKFFSNALDILVKLNDSTHAVQLWDI 314
             +++A   +  M    C             F       +AL++   +    + +    +
Sbjct: 404 GLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCKPNTITYTTL 463

Query: 315 MVGIG-----------------FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGA 357
           + G+                   +  PN++ +N ++   C    +D      +QM+ HG 
Sbjct: 464 LTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGC 523

Query: 358 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 417
            P+ +TYN + + +  +    E  +  H ++ N   P  +  ++ I +L   D  E AI+
Sbjct: 524 TPNLITYNTLLDGITNDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIK 583

Query: 418 IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFY 477
           +++ + + G+ P     N++L+ L           F   M++   +  E+T   L +   
Sbjct: 584 MFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLA 643

Query: 478 NES--RSMRDIFDSLERR 493
           NE   +  RD+   L  R
Sbjct: 644 NEDFLKETRDLLRELCSR 661



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 139/311 (44%), Gaps = 11/311 (3%)

Query: 122 VLGKNGRFEQMWNAVRVMKEDGVLSLP----TFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           VL    R E+  +A  ++KE    + P    TF +     C  G  ++A M  + MS HG
Sbjct: 361 VLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHG 420

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
            E ++V  N+L++  C Q  +   ALE    +     P+  ++  LL G      ++ A 
Sbjct: 421 CEVNIVTYNALVNGFCVQ-GRVDSALELFYSMP--CKPNTITYTTLLTGLCNAERLDAAA 477

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297
           +   EM+++ +  P +V+ +   +    +   +DEA++ +  M    C P L  ++  LD
Sbjct: 478 ELLAEMLQK-DCAP-NVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLD 535

Query: 298 ILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGA 357
            +    +S  A++L   +V  G +  P+++ Y+++IG+L   D V+   + F  +   G 
Sbjct: 536 GITNDCNSEEALELLHGLVSNGVS--PDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGM 593

Query: 358 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 417
            P ++ YN I   L K         FF  M+ N   P  L   T I  L + D  +   +
Sbjct: 594 RPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRD 653

Query: 418 IWNYILENGIL 428
           +   +   G+L
Sbjct: 654 LLRELCSRGVL 664



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 99/475 (20%), Positives = 188/475 (39%), Gaps = 70/475 (14%)

Query: 26  SPTSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVH 85
           +P++ +P+ P   R    +    ++ +AR++    +   + D+     CT +I   +L  
Sbjct: 37  APSASSPN-PANARLRRLIARDDLAEAARLVDRATSRGEAPDV---YLCTKLIR--NLCR 90

Query: 86  EVLQLSYDSPSSAVDFFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV 144
                     S A    R A R G  +  +A+N +V       R+ Q+  A R+     +
Sbjct: 91  R------GRTSDAARVLRAAERSGTAVDVFAYNTLV---AGYCRYGQLDAARRL-----I 136

Query: 145 LSLP------TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198
            S+P      T+  I    C  G+  EA+   D M   G +  VV    LL A+C+    
Sbjct: 137 ASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTG- 195

Query: 199 TSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
             +A+E L+ ++ K   P+  ++ +++ G  +EG V++A + F   +  + + P+ V +Y
Sbjct: 196 FGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDA-REFLNRLSSYGFQPDTV-SY 253

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317
            T L  L   K+ ++  +    M  +NC                                
Sbjct: 254 TTVLKGLCAAKRWEDVEELFAEMMEKNC-------------------------------- 281

Query: 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
                MPN + ++ ++   C    V+   +  +QM  HG   ++   N++   + K  RV
Sbjct: 282 -----MPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRV 336

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 437
            +  +F + M      P  ++  T +  L  A+  E A E+   ++     P E + N  
Sbjct: 337 DDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTF 396

Query: 438 LVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSL 490
           +  L   G +       E+M      +  VT + L   F  + R  S  ++F S+
Sbjct: 397 ICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSM 451


>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
 gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
          Length = 855

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/413 (22%), Positives = 162/413 (39%), Gaps = 57/413 (13%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           + +++D L K             M + G +    T+ ++ D +  A K DEA    DVM 
Sbjct: 436 YTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVML 495

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV--------DPDGDSFAILLEG 226
             G E   V   S++   C+        L+ +N  K+++        +P    F  LL  
Sbjct: 496 TKGPEPTAVTYGSIVHGFCK--------LDMINEAKEVIAQMRERGCEPGLFIFTSLLSY 547

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
           +  +G  EEA +   EM  R    P+ +L Y + +  L    +V EA      M  + C 
Sbjct: 548 YLSKGRAEEAYQVLTEMTAR-GCAPDVIL-YTSLIDLLFSTGRVPEARHVFDSMIEKGCA 605

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346
           P    +   +    K+ +   A ++ ++M   G    P+   YN+++      + VD  F
Sbjct: 606 PDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVG--PDCFAYNSLMDGYVKLERVDQAF 663

Query: 347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI-KNEWQPTPLNCATAITM 405
             +D+MV  G  P+++T+N++   L K+ +       F EM+ K+E  PT ++    I  
Sbjct: 664 GVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDG 723

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE---------- 455
           L  A     A   +  +++ GI+P   +   L+  L   GR+ + ++  E          
Sbjct: 724 LGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPD 783

Query: 456 -------------------------EMLNRRILIYEVTMHKLKKAFYNESRSM 483
                                    EM+ R     EVT   L++ F    R++
Sbjct: 784 VQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAGRAL 836



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 133/313 (42%), Gaps = 4/313 (1%)

Query: 139 MKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           M+E G    L  F S+   Y   G+ +EA      M+  G   DV+   SL+  +     
Sbjct: 529 MRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGR 588

Query: 198 QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
                  F + ++K   PD  ++  +++ + K GNVE A +   E++ +    P+   AY
Sbjct: 589 VPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEIL-ELMAKSGVGPD-CFAY 646

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317
            + +   ++ ++VD+A      M      P    F+  +  L K   +  A  L+  M+ 
Sbjct: 647 NSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLE 706

Query: 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
               + P L+ Y  +I  L     V   F  F +M+  G  P+  TY  +   L K  R+
Sbjct: 707 KD-EVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRI 765

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 437
            E +K   +M+K    P     +  IT L+D+   + A +++  +++ G  P E +   L
Sbjct: 766 PEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVL 825

Query: 438 LVGLRNLGRLSDV 450
             G R  GR  D+
Sbjct: 826 RRGFRAAGRALDL 838



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 71/343 (20%), Positives = 139/343 (40%), Gaps = 4/343 (1%)

Query: 142 DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSR 201
           D  L + ++ ++      + + DEA   F+ +   G   +VVA  +++  + +       
Sbjct: 358 DEALDVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDG 417

Query: 202 ALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFL 261
              F +       P   ++ ++++G  K   + +A K F +MV++    P+ +  Y T +
Sbjct: 418 LKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQK-GCVPDTI-TYTTLI 475

Query: 262 ITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFN 321
               +  ++DEA K L VM  +   PT   + + +    KL+    A ++   M   G  
Sbjct: 476 DGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCE 535

Query: 322 LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 381
             P L ++ +++    +    +  ++   +M   G  PD + Y  + + L    RV E  
Sbjct: 536 --PGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEAR 593

Query: 382 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 441
             F  MI+    P  L   T I         E A EI   + ++G+ P   + N L+ G 
Sbjct: 594 HVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGY 653

Query: 442 RNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMR 484
             L R+       + M+   I    VT + L    + + ++ R
Sbjct: 654 VKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDR 696



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 60/267 (22%), Positives = 113/267 (42%), Gaps = 5/267 (1%)

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           PD  +  I+L G  K   +++A + F EM       P  +++Y T +  L    ++DEA 
Sbjct: 18  PDVVNCNIVLNGLCKARKIDKAIELFLEM-PSMGCEPT-IVSYNTVISGLASIDKMDEAY 75

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
           KF   M    C P +  F+  +    K         L +  +       P++ +Y +VI 
Sbjct: 76  KFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALK---RFRPDVFLYTSVIH 132

Query: 335 LLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
             C   D+D  F+  ++M+  G  PD+  Y ++ + L K  RV E  + F  M K+    
Sbjct: 133 GYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKSGCLG 192

Query: 395 TPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 454
             +   T I  L +  + + A E++  ++E G  P     + L+  L   G++ +     
Sbjct: 193 DYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALCKAGKVDEANEIY 252

Query: 455 EEMLNRRILIYEVTMHKLKKAFYNESR 481
           + ++ +++    V  + L   +    R
Sbjct: 253 QTVVAKKVATSRVAYNSLMDGYCKLGR 279



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/307 (20%), Positives = 121/307 (39%), Gaps = 42/307 (13%)

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKK 211
           + +  C A K D+A+  F  M   G E  +V+ N+++S +    ++   A +F N  +  
Sbjct: 26  VLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISGL-ASIDKMDEAYKFFNSMIDN 84

Query: 212 IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD 271
             +PD  +F  L+ G+ K G  +  +    + ++RF  +   V  Y + +    +   +D
Sbjct: 85  GCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKRFRPD---VFLYTSVIHGYCKAGDLD 141

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA 331
              K L  M    C P    +   +D L KL                             
Sbjct: 142 TGFKILEEMLAAGCIPDAAAYFVLIDPLCKLG---------------------------- 173

Query: 332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
                     VD  +  F++M   G   D +T+  + E L  + ++ E  + + EMI+  
Sbjct: 174 ---------RVDEAYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERG 224

Query: 392 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 451
           ++P      + I  L  A + + A EI+  ++   +     + N L+ G   LGR+ D  
Sbjct: 225 YEPYLEVQDSLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGL 284

Query: 452 RFAEEML 458
           +   +M+
Sbjct: 285 KLLLQMV 291



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 66/312 (21%), Positives = 118/312 (37%), Gaps = 36/312 (11%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           ++ ++ ++        K DEA   F+ M  +G E DV+A  +L+   C+   Q       
Sbjct: 54  TIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKA-GQPQVGHML 112

Query: 206 LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
           LN+  K   PD   +  ++ G+ K G+++   K   EM+      P+   AY   +  L 
Sbjct: 113 LNQALKRFRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAA-GCIPDAA-AYFVLIDPLC 170

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF----- 320
           +  +VDEA +    M+   C      F   ++ L        A +L+  M+  G+     
Sbjct: 171 KLGRVDEAYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLE 230

Query: 321 ----------------------------NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
                                        +  + + YN+++   C    VD+  +   QM
Sbjct: 231 VQDSLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQM 290

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
           V    FPD  TYN++     +  R+ +  + F  +     +P      T I  L DA   
Sbjct: 291 VECDNFPDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRM 350

Query: 413 EIAIEIWNYILE 424
           E A   ++  L+
Sbjct: 351 EEAKAFFDEALD 362



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 59/138 (42%), Gaps = 1/138 (0%)

Query: 321 NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEV 380
            LMP+++  N V+  LC    +D     F +M   G  P  ++YN +   L    ++ E 
Sbjct: 15  GLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISGLASIDKMDEA 74

Query: 381 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 440
            KFF+ MI N  +P  +   T I     A +P++   + N  L+    P       ++ G
Sbjct: 75  YKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKR-FRPDVFLYTSVIHG 133

Query: 441 LRNLGRLSDVRRFAEEML 458
               G L    +  EEML
Sbjct: 134 YCKAGDLDTGFKILEEML 151



 Score = 42.0 bits (97), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 57/128 (44%), Gaps = 3/128 (2%)

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
           +M   G  PD +  N++   L K +++ +  + F EM     +PT ++  T I+ L   D
Sbjct: 10  EMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISGLASID 69

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR---RILIYEV 467
           + + A + +N +++NG  P   +   L+ G    G+         + L R    + +Y  
Sbjct: 70  KMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKRFRPDVFLYTS 129

Query: 468 TMHKLKKA 475
            +H   KA
Sbjct: 130 VIHGYCKA 137


>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Brachypodium distachyon]
          Length = 878

 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/380 (21%), Positives = 165/380 (43%), Gaps = 9/380 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT-FASIFDSYCGAGKYDE 165
           RG   +   +  ++D LGK G+ +  +     M + G  + P  + S+  ++   G+ ++
Sbjct: 449 RGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMHGRKED 508

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQ-ENQTSRALEFLNRVKKIVDPDGDSFAILL 224
               +  M   G   D+  +N+ +  + +  E +  RA+ F +       PD  S++IL+
Sbjct: 509 GHKIYKEMIRRGGRPDLTLLNTYMDCVFKAGEVEKGRAI-FEDMKSFGFLPDVRSYSILI 567

Query: 225 EGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
            G  K G   E +  F  M ++ F  +     AY   +  L +  +VD+A + L  MK +
Sbjct: 568 HGLTKAGQARETSNIFQAMSQQGFALDAR---AYNAVVDGLCKSGKVDKAYEVLEEMKVK 624

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
           +  PT+  + + +D L K++    A  L++     G  L  N+I+Y+++I        +D
Sbjct: 625 HVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIEL--NVILYSSLIDGFGKVGRID 682

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
             +   ++M+  G  P+  T+N + + L+K + + E    F  M + +  P     +  I
Sbjct: 683 EAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPNTYTYSILI 742

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
             L    +   A   W  + + G++P   +   ++ GL  +G ++D     E       +
Sbjct: 743 NGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVGNITDAYSLFERFKTNGGI 802

Query: 464 IYEVTMHKLKKAFYNESRSM 483
               + + L +   N +R M
Sbjct: 803 PDSASFNALIEGMSNANRPM 822



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/359 (21%), Positives = 155/359 (43%), Gaps = 6/359 (1%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK 162
           R   RG   S  ++N ++  LGK  + ++      VMK+D   ++ T+  I D  C AG+
Sbjct: 341 RLRERGCIPSVVSFNSILTCLGKKRKVDEALTLFDVMKKDAKPNISTYNIIIDMLCMAGR 400

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
            +EA    D M + G+  ++++VN ++  +C+          F +  ++  +P+  ++  
Sbjct: 401 VNEAYKIRDEMELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFESASERGCNPNSVTYCS 460

Query: 223 LLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           L++G  K+G +++A + F +M++   + NP   + Y + +       + ++  K  + M 
Sbjct: 461 LIDGLGKKGKIDDAYRLFEKMLDAGHDANP---IIYTSLIRNFFMHGRKEDGHKIYKEMI 517

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
                P L   +  +D + K  +      +++ M   GF  +P++  Y+ +I  L     
Sbjct: 518 RRGGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGF--LPDVRSYSILIHGLTKAGQ 575

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
                  F  M   G   D+  YN + + L K+ +V +  +   EM      PT     +
Sbjct: 576 ARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGS 635

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
            +  L   D  + A  ++      GI       + L+ G   +GR+ +     EEM+ +
Sbjct: 636 IVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKK 694



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 88/406 (21%), Positives = 172/406 (42%), Gaps = 15/406 (3%)

Query: 95  PSSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFAS 152
           P  A++  R     G  +S   +  +V  L + G+ E     V  +K   +   +  +  
Sbjct: 192 PERALELLRQMQDVGYEVSVPLFTTLVRALAREGQMEPALALVDEVKGSCLEPDIVLYNV 251

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI 212
             D +  AG  D A   F  +  HG+  D V+  S++  +C+   +   A E   +++  
Sbjct: 252 CIDCFGKAGSVDMAWKFFHELKAHGLRPDDVSYTSMVWVLCKA-GRLGEAEELFGQMEAE 310

Query: 213 VD-PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD 271
            D P   ++  ++ G+      ++A K    + ER       V+++ + L  L + ++VD
Sbjct: 311 RDVPCAYAYNTMIMGYGSAERFDDAYKLLERLRER--GCIPSVVSFNSILTCLGKKRKVD 368

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA 331
           EAL    VMK ++  P +  ++  +D+L        A ++ D M   G  L PNL+  N 
Sbjct: 369 EALTLFDVMK-KDAKPNISTYNIIIDMLCMAGRVNEAYKIRDEMELAG--LFPNLLSVNI 425

Query: 332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
           ++  LC  + ++   R F+     G  P+S+TY  + + L K  ++ +  + F +M+   
Sbjct: 426 MVDRLCKANQLEEAHRIFESASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAG 485

Query: 392 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 451
               P+   + I         E   +I+  ++  G  P     N  +  +   G +   R
Sbjct: 486 HDANPIIYTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPDLTLLNTYMDCVFKAGEVEKGR 545

Query: 452 RFAEEMLNRRIL----IYEVTMHKLKKAFYNESRSMRDIFDSLERR 493
              E+M +   L     Y + +H L KA   ++R   +IF ++ ++
Sbjct: 546 AIFEDMKSFGFLPDVRSYSILIHGLTKA--GQARETSNIFQAMSQQ 589



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 95/221 (42%), Gaps = 4/221 (1%)

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
           A L+    +   +E+A +  G M    ++ P    AY   +  L   +Q + AL+ LR M
Sbjct: 145 AALVATLVRSRRLEDAFRVIGAM-RHLKFRPPFS-AYTVLIGALAEARQPERALELLRQM 202

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
           +      ++  F+  +  L +      A+ L D + G    L P++++YN  I       
Sbjct: 203 QDVGYEVSVPLFTTLVRALAREGQMEPALALVDEVKG--SCLEPDIVLYNVCIDCFGKAG 260

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
            VD  ++FF ++  HG  PD ++Y  +   L K  R+ E E+ F +M      P      
Sbjct: 261 SVDMAWKFFHELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAERDVPCAYAYN 320

Query: 401 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 441
           T I     A+  + A ++   + E G +P   S N +L  L
Sbjct: 321 TMIMGYGSAERFDDAYKLLERLRERGCIPSVVSFNSILTCL 361


>gi|302767746|ref|XP_002967293.1| hypothetical protein SELMODRAFT_87828 [Selaginella moellendorffii]
 gi|300165284|gb|EFJ31892.1| hypothetical protein SELMODRAFT_87828 [Selaginella moellendorffii]
          Length = 321

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 135/324 (41%), Gaps = 42/324 (12%)

Query: 139 MKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           M E G + ++ TF  + D  C A +  +A    +VM   G   + +  N ++ A+C+ E 
Sbjct: 1   MAEKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMGERGCFPNALVFNGIMDALCK-EG 59

Query: 198 QTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
           +++ A  F+  ++ + V P   ++ +L++G+ KE  +  A +   EM  R    P HV  
Sbjct: 60  RSAEAYGFIETMRSMGVSPTIVTYNLLIDGFCKEEKLHRALEILQEMTGRGH-EPNHV-T 117

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
           Y TFL  L +  +VD+AL   R M  +     +  ++  +D L +      A  L D M 
Sbjct: 118 YNTFLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEME 177

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
             G   +P    YNA++  LC    ++   + F +M   G  PD LT+ M+     +  R
Sbjct: 178 NSG--CVPKPGCYNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHR 235

Query: 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 436
           + +      +M                                      G+ P E   N 
Sbjct: 236 IDDALLLLQQMK-----------------------------------SAGLAPREVIYNT 260

Query: 437 LLVGLRNLGRLSDVRRFAEEMLNR 460
           L+  L   GR+S+  R  +EM++R
Sbjct: 261 LIDALNRAGRVSEAYRLLQEMISR 284



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 113/287 (39%), Gaps = 38/287 (13%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           + ++VD L K  R    +  V VM E G   +   F  I D+ C  G+  EA    + M 
Sbjct: 13  FGILVDGLCKANRLTDAFELVEVMGERGCFPNALVFNGIMDALCKEGRSAEAYGFIETMR 72

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNV 233
             GV   +V  N L+   C++E +  RALE L  +  +  +P+  ++   L G  K G V
Sbjct: 73  SMGVSPTIVTYNLLIDGFCKEE-KLHRALEILQEMTGRGHEPNHVTYNTFLHGLCKYGKV 131

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           ++A   F  M E+       V  Y T +  L +  ++ EA   L  M+   C P    ++
Sbjct: 132 DDALALFRAMTEK--KIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCVPKPGCYN 189

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGF--------------------------------- 320
             L  L K +    A +L+  M G G                                  
Sbjct: 190 AILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQMKSA 249

Query: 321 NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMI 367
            L P  ++YN +I  L     V   +R   +M+  G  P+S TY ++
Sbjct: 250 GLAPREVIYNTLIDALNRAGRVSEAYRLLQEMISRGLSPNSRTYALM 296



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 85/210 (40%), Gaps = 2/210 (0%)

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
           V+ +   +  L +  ++ +A + + VM    CFP    F+  +D L K   S  A    +
Sbjct: 10  VVTFGILVDGLCKANRLTDAFELVEVMGERGCFPNALVFNGIMDALCKEGRSAEAYGFIE 69

Query: 314 IMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 373
            M  +G +  P ++ YN +I   C  + +        +M   G  P+ +TYN     L K
Sbjct: 70  TMRSMGVS--PTIVTYNLLIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGLCK 127

Query: 374 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 433
             +V +    F  M + + +       T I  L  A +   A  + + +  +G +P    
Sbjct: 128 YGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCVPKPGC 187

Query: 434 ANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
            N +L  L    R+++  +  + M    IL
Sbjct: 188 YNAILSWLCKGSRINEAHKLFKRMTGSGIL 217



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 57/140 (40%)

Query: 323 MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
           +P ++ +  ++  LC  + + + F   + M   G FP++L +N I + L K  R  E   
Sbjct: 7   IPTVVTFGILVDGLCKANRLTDAFELVEVMGERGCFPNALVFNGIMDALCKEGRSAEAYG 66

Query: 383 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 442
           F   M      PT +     I      ++   A+EI   +   G  P   + N  L GL 
Sbjct: 67  FIETMRSMGVSPTIVTYNLLIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGLC 126

Query: 443 NLGRLSDVRRFAEEMLNRRI 462
             G++ D       M  ++I
Sbjct: 127 KYGKVDDALALFRAMTEKKI 146


>gi|115475535|ref|NP_001061364.1| Os08g0248400 [Oryza sativa Japonica Group]
 gi|113623333|dbj|BAF23278.1| Os08g0248400, partial [Oryza sativa Japonica Group]
          Length = 440

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/372 (21%), Positives = 163/372 (43%), Gaps = 20/372 (5%)

Query: 90  LSYDSPSSAVDFFRWAGRGQ--RLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL 145
           ++ DSP++AV  F    R     ++P  + + +++    + GR +  +  +  + + G  
Sbjct: 71  VARDSPAAAVSGFNRMARSSDGAVTPTLHTYGILIGCCCRAGRLDLGFAGLGNVIKKGYR 130

Query: 146 SLPT-FASIFDSYCGAGKYDEAV-MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRAL 203
             P  F  +  S C   +   A+ +    M+  G    V + N LL  +C  E+++  AL
Sbjct: 131 VEPIIFTPLLKSLCAEKRTSNAMNIVLRRMTELGCAPHVFSYNILLKGLC-HESRSQEAL 189

Query: 204 EFLNRVKKIVDPDGD------SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
           E L+    + D  GD      S++ +++G  KEG+ ++A  T+ EM+ER    P+ V+ Y
Sbjct: 190 ELLH---MMADDGGDCPPDVVSYSTIIDGLFKEGDSDKAYSTYHEMLERGIL-PD-VVTY 244

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317
            T +  L + + +D+A+  L  M      P    +++ +        S  A+ + + M  
Sbjct: 245 NTIVAALCKAQAMDKAMDVLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGILEKMCS 304

Query: 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
            G    P+ + Y +++  LC N       +  D M+  G  P+ +TY+ +         +
Sbjct: 305 DGVE--PDAVTYTSLMDYLCKNGRCIEARKILDSMIKRGLKPNVITYSTLLHGYATKGAL 362

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 437
            E+      M++N  QP     +  I         ++A+ +++ + +  + P   +   L
Sbjct: 363 VEMRDLLDLMVRNGIQPDRHVFSILICACTKHQNVDVAMFVFSKMRQQRLTPDVVTYGTL 422

Query: 438 LVGLRNLGRLSD 449
           + GL   GR+ D
Sbjct: 423 IDGLCKSGRVDD 434



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/317 (21%), Positives = 138/317 (43%), Gaps = 13/317 (4%)

Query: 184 AVNSLLSAICRQENQTSRALEFLNRVKK----IVDPDGDSFAILLEGWEKEGNVEEANKT 239
           ++N  L+A+ R  +  + A+   NR+ +     V P   ++ IL+    + G ++     
Sbjct: 63  SLNRALAAVAR--DSPAAAVSGFNRMARSSDGAVTPTLHTYGILIGCCCRAGRLDLGFAG 120

Query: 240 FGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKF-LRVMKGENCFPTLKFFSNALD 297
            G ++++ +   P   + +   L +L   K+   A+   LR M    C P +  ++  L 
Sbjct: 121 LGNVIKKGYRVEP---IIFTPLLKSLCAEKRTSNAMNIVLRRMTELGCAPHVFSYNILLK 177

Query: 298 ILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGA 357
            L   + S  A++L  +M   G +  P+++ Y+ +I  L    D D  +  + +M+  G 
Sbjct: 178 GLCHESRSQEALELLHMMADDGGDCPPDVVSYSTIIDGLFKEGDSDKAYSTYHEMLERGI 237

Query: 358 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 417
            PD +TYN I   L K + + +     + M+KN   P  +   + +     + + + AI 
Sbjct: 238 LPDVVTYNTIVAALCKAQAMDKAMDVLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIG 297

Query: 418 IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFY 477
           I   +  +G+ P   +   L+  L   GR  + R+  + M+ R +    +T   L   + 
Sbjct: 298 ILEKMCSDGVEPDAVTYTSLMDYLCKNGRCIEARKILDSMIKRGLKPNVITYSTLLHGYA 357

Query: 478 NESR--SMRDIFDSLER 492
            +     MRD+ D + R
Sbjct: 358 TKGALVEMRDLLDLMVR 374



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/344 (22%), Positives = 133/344 (38%), Gaps = 51/344 (14%)

Query: 141 EDGVLS--LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198
            DG ++  L T+  +    C AG+ D        +   G   + +    LL ++C  E +
Sbjct: 90  SDGAVTPTLHTYGILIGCCCRAGRLDLGFAGLGNVIKKGYRVEPIIFTPLLKSLC-AEKR 148

Query: 199 TSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYE 258
           TS A+  + R                                  M E     P HV +Y 
Sbjct: 149 TSNAMNIVLR---------------------------------RMTE-LGCAP-HVFSYN 173

Query: 259 TFLITLIRGKQVDEALKFLRVMK--GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
             L  L    +  EAL+ L +M   G +C P +  +S  +D L K  DS  A   +  M+
Sbjct: 174 ILLKGLCHESRSQEALELLHMMADDGGDCPPDVVSYSTIIDGLFKEGDSDKAYSTYHEML 233

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
             G  ++P+++ YN ++  LC    +D      ++MV +G  PD +TYN I      + +
Sbjct: 234 ERG--ILPDVVTYNTIVAALCKAQAMDKAMDVLNRMVKNGVMPDCITYNSIVHGYCSSGQ 291

Query: 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 436
             E      +M  +  +P  +   + +  L        A +I + +++ G+ P   + + 
Sbjct: 292 SKEAIGILEKMCSDGVEPDAVTYTSLMDYLCKNGRCIEARKILDSMIKRGLKPNVITYST 351

Query: 437 LLVGLRNLGRLSDVRRFAEEMLNR---------RILIYEVTMHK 471
           LL G    G L ++R   + M+            ILI   T H+
Sbjct: 352 LLHGYATKGALVEMRDLLDLMVRNGIQPDRHVFSILICACTKHQ 395



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 1/122 (0%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +  ++D L KNGR  +    +  M + G+  ++ T++++   Y   G   E     D+M 
Sbjct: 314 YTSLMDYLCKNGRCIEARKILDSMIKRGLKPNVITYSTLLHGYATKGALVEMRDLLDLMV 373

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
            +G++ D    + L+ A  + +N       F    ++ + PD  ++  L++G  K G V+
Sbjct: 374 RNGIQPDRHVFSILICACTKHQNVDVAMFVFSKMRQQRLTPDVVTYGTLIDGLCKSGRVD 433

Query: 235 EA 236
           +A
Sbjct: 434 DA 435


>gi|414591141|tpg|DAA41712.1| TPA: hypothetical protein ZEAMMB73_063178 [Zea mays]
          Length = 374

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/359 (22%), Positives = 153/359 (42%), Gaps = 29/359 (8%)

Query: 148 PTFASIF-DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN--QTSRALE 204
           P  AS+  D  C +G+ D+A    D M  HGV  + +  NSLL    RQ++  +    LE
Sbjct: 14  PLAASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQEILE 73

Query: 205 FLNR----------------------VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
            +                        V   V+P+  ++ +L+ G+ K G +E A     +
Sbjct: 74  IMENEGIEATVGDGTCGGPPKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLAD 133

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
           M  + +    + + + T +    R   VD+ALK    M+       +  ++     L ++
Sbjct: 134 M--QGQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRV 191

Query: 303 NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSL 362
           N    A  L  IM+ +G  ++PN + Y  +I + C + D+    R F +M   GA P  +
Sbjct: 192 NRLDEAKTLLHIMIEMG--VVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVV 249

Query: 363 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 422
           TYN++     K   + E E+F  EM K  + P     A+ +       + ++A++++  +
Sbjct: 250 TYNVMIHGYAKKGSIREAERFRKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEM 309

Query: 423 LENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
            + G  P   +   L+ GL   GR     +  ++ML   ++  +     L  + + ++R
Sbjct: 310 KQRGTEPNVVAYTALISGLAKEGRSEAAFQLYDDMLKAGLIPDDSLYSALVGSLHTDNR 368



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 108/232 (46%), Gaps = 5/232 (2%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYD 164
           G+G  L+   +N M+D   + G  +        M++ GV L + T+ ++    C   + D
Sbjct: 136 GQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLD 195

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
           EA     +M   GV  + V   +L+S  C+  +       F    +K   P   ++ +++
Sbjct: 196 EAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMI 255

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G+ K+G++ EA +   EM E+  + P+ V  Y + +       +VD ALK    MK   
Sbjct: 256 HGYAKKGSIREAERFRKEM-EKKGFVPD-VYTYASLVHGHCVNGKVDVALKLFEEMKQRG 313

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLL 336
             P +  ++  +  L K   S  A QL+D M+  G  L+P+  +Y+A++G L
Sbjct: 314 TEPNVVAYTALISGLAKEGRSEAAFQLYDDMLKAG--LIPDDSLYSALVGSL 363


>gi|326531326|dbj|BAK05014.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 537

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 95/425 (22%), Positives = 183/425 (43%), Gaps = 21/425 (4%)

Query: 82  DLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGR---FEQMWNAV 136
           D+V +VLQ    +   A+ FF WA         P  +  M+D+LG+  +     Q+++ +
Sbjct: 113 DVVLKVLQKQRSNWQVALLFFTWAAGLPTYEHGPRTYIEMLDILGRMKKVRLMRQLFDEI 172

Query: 137 RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
              +   V++   FA + + Y GA K  EA+  F   + +G E D+V    LL ++CR +
Sbjct: 173 PEQRRGLVVTNRMFAVLLNRYAGAHKVQEAIEIFYKRNDYGFEVDLVGFQILLMSLCRYK 232

Query: 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
           +       FL + K    P   S+ I+L GW  +G++ +A + + E++   +  P+ +  
Sbjct: 233 HVEEAEALFLQK-KDEFPPVIKSWNIILNGWCVKGSLPDAKRVWNEIIAS-KLKPD-LFT 289

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
           Y TF+  L +  ++  A+K    M  +   P +   +  +D L        A++++  M 
Sbjct: 290 YGTFINALTKAGKLSTAVKLFTSMWEKGINPDVAICNCIIDQLCFKKKIPEALKIFGEMN 349

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
             G     ++  YN +I   C     + V+   D M   G  P+++TY  I +     ++
Sbjct: 350 DRG--CQADVATYNTLIKHFCKIRRTEKVYELLDDMEKKGCSPNNMTYTYILKT---TEK 404

Query: 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 436
             +V      M ++  +         + + +     +   ++W  +  NG  P + S   
Sbjct: 405 PRDVMNLIQRMEESGCKLDSDTYNLILNLYVSMKYEKGVQQVWEEMERNGSGPDQRSFTI 464

Query: 437 LLVGLRNLGRLSDVRRFAEEMLNR--------RILIYEVTMHKLKKAFYNESRSMRDIFD 488
           ++ GL + G+L    ++   M +R        RIL+  + + K      + S SM     
Sbjct: 465 MVHGLHSQGQLDQALQYYTTMKSRGMTPEPRTRILVKAIHIKKGGPETEDRSPSMTGRNL 524

Query: 489 SLERR 493
            L+RR
Sbjct: 525 KLDRR 529


>gi|302808035|ref|XP_002985712.1| hypothetical protein SELMODRAFT_181879 [Selaginella moellendorffii]
 gi|300146621|gb|EFJ13290.1| hypothetical protein SELMODRAFT_181879 [Selaginella moellendorffii]
          Length = 447

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 144/343 (41%), Gaps = 7/343 (2%)

Query: 96  SSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           S A+  FR  G     + Y ++ +VD L K+G+  + +  V  M + G   ++ T+ ++ 
Sbjct: 82  SQALLHFRRIGEDCAPNVYTYSTLVDALCKSGQPHEAYGLVTEMVKKGCSPNVVTYNALI 141

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD 214
           D +    + DE +M    MS  G   DV+    +L   C+  N    A   LN ++K   
Sbjct: 142 DGFRKLERLDEVLMLLKEMSQRGCRADVITYTMILDIFCKN-NSIDEAYRLLNALEKRNV 200

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
              +S    L   E +    EA     +M++  E    + + Y T L+ L +  ++DEA 
Sbjct: 201 VTYNSLFTALSTAEGD-RTTEALSLLEKMIQ--EGTRPNQVNYRTVLLMLCKNSRLDEAY 257

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
           + L  M  + C      +   +        +  +++L   M+G G+ L    +  N VI 
Sbjct: 258 QVLLSMYSQGCKTDDVSYKILVVAFANAGRTYDSLELLGRMLGSGYILDTKTM--NVVIH 315

Query: 335 LLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
             C   D+    + F  M   G+ P ++TYN +     K ++     K  H+MI+ +++P
Sbjct: 316 KFCKAGDLHEAHQLFKSMYQRGSIPSNVTYNTLIGAFCKAQQPDTAVKLLHQMIQADFKP 375

Query: 395 TPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 437
             +   + I         E A  I+  +++NG  P   S   L
Sbjct: 376 NVITYNSIIKSFCREQREEEARGIFQMMVDNGCFPDRVSYTTL 418



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 88/438 (20%), Positives = 175/438 (39%), Gaps = 53/438 (12%)

Query: 87  VLQLSYDSPS--SAVDFFRWAGRGQ-RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG 143
           +LQ+  DS       +F+R    G   ++  ++ +++    K G F+Q    +  MK +G
Sbjct: 1   MLQIFVDSKRHRDGYEFYRHRLLGSYAVNEVSYGILMQGFCKAGEFQQALELLDEMKSNG 60

Query: 144 VL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRA 202
           V  ++    +I    C AGK  +A++ F  +       +V   ++L+ A+C+   Q   A
Sbjct: 61  VRPNVVIHTTIIRGLCTAGKVSQALLHFRRIG-EDCAPNVYTYSTLVDALCK-SGQPHEA 118

Query: 203 LEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFL 261
              +   VKK   P+  ++  L++G+ K   ++E      EM +R       V+ Y   L
Sbjct: 119 YGLVTEMVKKGCSPNVVTYNALIDGFRKLERLDEVLMLLKEMSQR--GCRADVITYTMIL 176

Query: 262 ITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFN 321
               +   +DEA + L  ++  N       F+ AL    + + +T A+ L + M+  G  
Sbjct: 177 DIFCKNNSIDEAYRLLNALEKRNVVTYNSLFT-ALST-AEGDRTTEALSLLEKMIQEGTR 234

Query: 322 LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTY----------------- 364
             PN + Y  V+ +LC N  +D  ++    M   G   D ++Y                 
Sbjct: 235 --PNQVNYRTVLLMLCKNSRLDEAYQVLLSMYSQGCKTDDVSYKILVVAFANAGRTYDSL 292

Query: 365 ------------------NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406
                             N++     K   +HE  + F  M +    P+ +   T I   
Sbjct: 293 ELLGRMLGSGYILDTKTMNVVIHKFCKAGDLHEAHQLFKSMYQRGSIPSNVTYNTLIGAF 352

Query: 407 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR-----R 461
             A +P+ A+++ + +++    P   + N ++       R  + R   + M++      R
Sbjct: 353 CKAQQPDTAVKLLHQMIQADFKPNVITYNSIIKSFCREQREEEARGIFQMMVDNGCFPDR 412

Query: 462 ILIYEVTMHKLKKAFYNE 479
           +    + + K + A Y++
Sbjct: 413 VSYTTLKLSKNEAAIYDQ 430


>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 915

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/345 (22%), Positives = 157/345 (45%), Gaps = 8/345 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            + +++  L  + R  +  N V+ M+E G+  ++ T+  + DS C   K ++A      M
Sbjct: 325 TYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQM 384

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
              G+  +V+  N+L++  C++      AL+ +  ++ + + P+  ++  L++G+ K  N
Sbjct: 385 LEKGLMPNVITYNALINGYCKR-GMIEDALDVVELMESRNLRPNTRTYNELIKGYCKR-N 442

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           V +A     +M+ER +  P+ V+ Y + +    R    D A + L +M      P    +
Sbjct: 443 VHKAMGVLNKMLER-KVLPD-VVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTY 500

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           ++ +D L K      A  L+D +     +++PN++MY A+I   C    V+      ++M
Sbjct: 501 TSMIDSLCKSKRVEEACDLFDSLEQK--DVIPNVVMYTALIDGYCKAGKVNEAHLMLEKM 558

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
           +     P+SLT+N +   L  + ++ E      +M+K + QPT       I  LL   + 
Sbjct: 559 LSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDF 618

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           + A   +  +L +G  P   +    +      GRL D      +M
Sbjct: 619 DHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKM 663



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 82/381 (21%), Positives = 158/381 (41%), Gaps = 41/381 (10%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N MV+   K G  E+    V ++ E G+     T+ S+   YC     D A   F  
Sbjct: 219 YTYNKMVNGYCKVGNVEEANQYVSMIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKE 278

Query: 173 MSMHGVEQDVVAVNSLLSAICRQEN-------------------------------QTSR 201
           M + G  ++ VA   L+  +C +                                  + R
Sbjct: 279 MPLKGCRRNEVAYTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSER 338

Query: 202 ALEFLNRVKKI----VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
             E LN VK++    + P+  ++ +L++    +  +E+A +  G+M+E+      +V+ Y
Sbjct: 339 KSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLM--PNVITY 396

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317
              +    +   +++AL  + +M+  N  P  + ++  +    K N    A+ + + M  
Sbjct: 397 NALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCKRN-VHKAMGVLNKM-- 453

Query: 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
           +   ++P+++ YN++I   C + + D+ +R    M   G  PD  TY  + + L K+KRV
Sbjct: 454 LERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRV 513

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 437
            E    F  + + +  P  +     I     A +   A  +   +L    LP   + N L
Sbjct: 514 EEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNAL 573

Query: 438 LVGLRNLGRLSDVRRFAEEML 458
           + GL   G+L +     E+M+
Sbjct: 574 IHGLCTDGKLKEATLLEEKMV 594



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/364 (19%), Positives = 150/364 (41%), Gaps = 51/364 (14%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G + + + + +++D L    + E+    +  M E G++ ++ T+ ++ + YC  G  ++
Sbjct: 352 KGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIED 411

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILL 224
           A+   ++M    +  +    N L+   C++     +A+  LN+ +++ V PD  ++  L+
Sbjct: 412 ALDVVELMESRNLRPNTRTYNELIKGYCKR--NVHKAMGVLNKMLERKVLPDVVTYNSLI 469

Query: 225 EGWEKEGNVEEANKTFGEMVERF----EWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
           +G  + GN + A +    M +R      W       Y + + +L + K+V+EA      +
Sbjct: 470 DGQCRSGNFDSAYRLLSLMNDRGLVPDPW------TYTSMIDSLCKSKRVEEACDLFDSL 523

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
           + ++  P +  ++  +D   K      A  + + M  +  N +PN + +NA+I  LC + 
Sbjct: 524 EQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKM--LSKNCLPNSLTFNALIHGLCTDG 581

Query: 341 -----------------------------------DVDNVFRFFDQMVFHGAFPDSLTYN 365
                                              D D+ +R F QM+  G  PD+ TY 
Sbjct: 582 KLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYT 641

Query: 366 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 425
              +   +  R+ + E    +M +N   P     ++ I    D      A  +   + + 
Sbjct: 642 TFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRMHDT 701

Query: 426 GILP 429
           G  P
Sbjct: 702 GCEP 705



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 89/418 (21%), Positives = 165/418 (39%), Gaps = 53/418 (12%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWNAVR 137
           +P  V  +  L  D P +A++F  W  +  R   S Y++  ++ +L  NG    ++  +R
Sbjct: 89  SPSHVSSLFSLDLD-PKTALNFSHWISQNPRYKHSVYSYASLLTLLINNGYVGVVFK-IR 146

Query: 138 VMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           ++      S+     + D  C     DE   SF++      +  +   N+LL+++ R   
Sbjct: 147 LLMIKSCDSVADTLFVLD-LCRKMNKDE---SFEL----KYKLIIGCYNTLLNSLARFGL 198

Query: 198 QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
                  ++  ++  V P+  ++  ++ G+ K GNVEEAN+    +VE    +P+    Y
Sbjct: 199 VDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVSMIVEA-GLDPD-FFTY 256

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317
            + ++   + K +D A K  + M  + C                                
Sbjct: 257 TSLIMGYCQRKDLDSAFKVFKEMPLKGC-------------------------------- 284

Query: 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
                  N + Y  +I  LC    +D     F +M     +P   TY ++ + L  ++R 
Sbjct: 285 -----RRNEVAYTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERK 339

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 437
            E      EM +   +P        I  L    + E A E+   +LE G++P   + N L
Sbjct: 340 SEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNAL 399

Query: 438 LVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFY--NESRSMRDIFDSLERR 493
           + G    G + D     E M +R +     T ++L K +   N  ++M  +   LER+
Sbjct: 400 INGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCKRNVHKAMGVLNKMLERK 457



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 62/306 (20%), Positives = 121/306 (39%), Gaps = 23/306 (7%)

Query: 83  LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED 142
           L+H +L+   D   +   F +    G +   + +   +    + GR +   + V  MKE+
Sbjct: 608 LIHRLLK-DGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKEN 666

Query: 143 GVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS----------- 190
           GV   L T++S+   Y   G+ + A +    M   G E       SL+            
Sbjct: 667 GVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLLEMKYGKVK 726

Query: 191 ----AICRQEN--QTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
                +C   N  +    +E L + V+  V P+  S+  L+ G  + GN+  A K F  M
Sbjct: 727 GGEPGVCVMSNMMEFDIVVELLEKMVEHGVTPNAKSYEKLMLGICEIGNLRVAEKVFDHM 786

Query: 244 VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303
            ++   +P   L +   L    + ++ +EA K +  M      P L+     +  L K  
Sbjct: 787 QQKEGISPSE-LVFNALLSCCCKLEKHNEAAKVVDDMICVGHLPQLESCKILICRLYKKG 845

Query: 304 DSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLT 363
           +      ++  ++  G+    + + +  +I  +     V+  +  F+ M  +G    S T
Sbjct: 846 EKERGTSVFQNLLQCGY--YDDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCTFSSQT 903

Query: 364 YNMIFE 369
           Y+++ E
Sbjct: 904 YSLLIE 909


>gi|242069921|ref|XP_002450237.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
 gi|241936080|gb|EES09225.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
          Length = 757

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 90/409 (22%), Positives = 166/409 (40%), Gaps = 45/409 (11%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +  ++D L K    ++     + M + GV  +  T+  +   Y   GK+ E V     MS
Sbjct: 205 YTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQEMS 264

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
            HG++ D      LL  +C+    T     F + ++K + P+   + ILL G+  EG++ 
Sbjct: 265 THGLQPDCYIYAVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLS 324

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           E +     MV     +P+H + +        +   +DEA+     M+ +   P +  +  
Sbjct: 325 EMHSFLDLMVGN-GVSPDHHI-FNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGA 382

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD------------- 341
            +D L KL     AV  ++ M+  G  + P++ ++++++  LC  D              
Sbjct: 383 LIDALCKLGRVDDAVLKFNQMIDEG--MTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLD 440

Query: 342 ----VDNVF------------------RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
               +D VF                  R  D M+  G  PD ++YN + +      R+ E
Sbjct: 441 QGIRLDTVFFNTLMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDE 500

Query: 380 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 439
             K    ++    +P  +   T +     A   + A  ++  +L  G+ P   + N +L 
Sbjct: 501 AAKLLDVIVSIGLKPDKVTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILH 560

Query: 440 GLRNLGRLSDVRRFAEEMLNRR----ILIYEVTMHKL-KKAFYNESRSM 483
           GL   GR S+ +     M+N R    I  Y + ++ L K  F +E+  M
Sbjct: 561 GLFQTGRFSEAKELYLSMINSRTQMNIYTYNIIINGLCKNNFVDEAFKM 609



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 155/346 (44%), Gaps = 15/346 (4%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           R QRLSP    +  ++D L K GR +        M ++G+   +  F+S+    C   K+
Sbjct: 369 RQQRLSPNIVTYGALIDALCKLGRVDDAVLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKW 428

Query: 164 DEAV-MSFDVMSMHGVEQDVVAVNSLLSAICRQEN--QTSRALEFLNRVKKIVDPDGDSF 220
           ++A  + F+V+   G+  D V  N+L+  +CR+    +  R ++ + RV   V PD  S+
Sbjct: 429 EKAEELFFEVLD-QGIRLDTVFFNTLMCNLCREGRVMEAQRLIDLMLRVG--VRPDVISY 485

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
             L++G    G ++EA K   +++      P+ V  Y T L    + +++D+A    R M
Sbjct: 486 NTLVDGHCLTGRIDEAAKLL-DVIVSIGLKPDKV-TYNTLLHGYCKARRIDDAYSLFREM 543

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
             +   P +  ++  L  L +    + A +L+  M+     +  N+  YN +I  LC N+
Sbjct: 544 LMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQM--NIYTYNIIINGLCKNN 601

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP-TPLNC 399
            VD  F+ F  +       D  T N++   L+K  R  +    F  +      P     C
Sbjct: 602 FVDEAFKMFHSLCSKDLQLDIFTANIMIGALLKGGRKEDAMDLFATISAYGLVPDVETYC 661

Query: 400 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
             A  ++ +    E+  E+++ + ENG  P     N L+  L + G
Sbjct: 662 LIAENLIKEGSLEELD-ELFSAMEENGTAPNSRMLNALVRWLLHRG 706



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 129/312 (41%), Gaps = 9/312 (2%)

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRAL--EFLNRVKK-- 211
           ++ G+   ++A+  FD M  H     V A N LL+A+ R    ++  L     NR+ +  
Sbjct: 25  AHSGSLGLNDALKLFDEMLTHARPASVRAFNQLLTAVSRARCSSASELVVSLFNRMIREC 84

Query: 212 --IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
              V P   ++ IL+  + + G ++     FG ++ +  W     + +   L  L   K+
Sbjct: 85  SIKVAPSSFTYTILIGCFCRMGRLKHGFAAFG-LILKTGWRVNDTVIFSQLLKGLCDAKR 143

Query: 270 VDEALK-FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG-FNLMPNLI 327
           VDEA    LR M    C P +  +S  L        +  A++L  +M   G  +  PN++
Sbjct: 144 VDEATDILLRRMPEFGCTPDVFSYSILLKGFCNEKRAEEALELLSMMADDGDGSHTPNVV 203

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            Y  VI  LC    VD     F  M+  G  P++ TY  +    +   +  EV +   EM
Sbjct: 204 TYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQEM 263

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
             +  QP     A  +  L        A  I++ ++  GI P       LL G    G L
Sbjct: 264 STHGLQPDCYIYAVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEGSL 323

Query: 448 SDVRRFAEEMLN 459
           S++  F + M+ 
Sbjct: 324 SEMHSFLDLMVG 335



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 123/291 (42%), Gaps = 11/291 (3%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           FF    +G RL    +N ++  L + GR  +    + +M   GV   + ++ ++ D +C 
Sbjct: 435 FFEVLDQGIRLDTVFFNTLMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCL 494

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
            G+ DEA    DV+   G++ D V  N+LL   C+          F   + K + PD  +
Sbjct: 495 TGRIDEAAKLLDVIVSIGLKPDKVTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVT 554

Query: 220 FAILLEGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           +  +L G  + G   EA + +  M+  R + N   +  Y   +  L +   VDEA K   
Sbjct: 555 YNTILHGLFQTGRFSEAKELYLSMINSRTQMN---IYTYNIIINGLCKNNFVDEAFKMFH 611

Query: 279 VMKGENCFPTLKFFSNALDI--LVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLL 336
            +  ++    L  F+  + I  L+K      A+ L+  +   G  L+P++  Y  +   L
Sbjct: 612 SLCSKDL--QLDIFTANIMIGALLKGGRKEDAMDLFATISAYG--LVPDVETYCLIAENL 667

Query: 337 CNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
                ++ +   F  M  +G  P+S   N +   L+    ++    +  ++
Sbjct: 668 IKEGSLEELDELFSAMEENGTAPNSRMLNALVRWLLHRGDINRAGAYLSKL 718


>gi|449438480|ref|XP_004137016.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/408 (21%), Positives = 161/408 (39%), Gaps = 40/408 (9%)

Query: 86  EVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV- 144
           E+L  S D     + FF    RG  ++  A N ++   G  G  E++    R MKE+G+ 
Sbjct: 156 ELLTFSADLVKIRLVFFELKDRGLLMTESAANSLIKSFGNLGLVEELLWVWRRMKENGID 215

Query: 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204
            SL T+  + +    +   + A   F+VM    +  D V  N ++   C+         +
Sbjct: 216 PSLYTYNFLVNGLVNSMFIESAEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGKLQKAMEK 275

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           F +   K V PD  ++  L++    E + +     + EM ER    P H  +Y   +  L
Sbjct: 276 FRDMEMKNVKPDKITYMTLIQACYSERDFDTCLSLYLEMEERGLEIPPH--SYSLVIGGL 333

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
            + ++  EA      M  + C   +  ++  +D   K      A++L++ M   GF   P
Sbjct: 334 CKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFE--P 391

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFD---------------------------------- 350
           + + Y+ ++  LC +  +D+    FD                                  
Sbjct: 392 DAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAENLF 451

Query: 351 -QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 409
            +M   G   DS  YN I + L K+ ++ +    F  M +     T       I  L   
Sbjct: 452 EEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGLFKE 511

Query: 410 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
            + E AI+ W+ +++ GI P  AS   L +GL   G+++   +  +++
Sbjct: 512 HKNEEAIKFWDKMIDKGITPTVASFRALAIGLCLCGKVARACKILDDL 559


>gi|302785283|ref|XP_002974413.1| hypothetical protein SELMODRAFT_174049 [Selaginella moellendorffii]
 gi|300158011|gb|EFJ24635.1| hypothetical protein SELMODRAFT_174049 [Selaginella moellendorffii]
          Length = 447

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/345 (22%), Positives = 146/345 (42%), Gaps = 7/345 (2%)

Query: 96  SSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           S A+  FR  G     + Y ++++VD L K+G+  + +  V  M + G   ++ T+ ++ 
Sbjct: 82  SQALLHFRRIGEDCAPNVYTYSILVDALCKSGQPHEAYGLVTEMVKKGCSPNVVTYNALI 141

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD 214
           D +    + DE +M    MS  G   DV+    +L   C+  N    A   LN ++K   
Sbjct: 142 DGFRKLERLDEVLMLLKEMSQRGCRADVITYTMILDIFCKN-NSIDEAYRLLNALEKRNV 200

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
              +S    L   E +    EA     +M++  E    + + Y T L+ L +  ++DEA 
Sbjct: 201 VTYNSLFTALSTAEGD-RTTEALSLLEKMIQ--EGTRPNQVNYRTVLLMLCKNSRLDEAY 257

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
           + L  M  + C      +   +        +  +++L   M+G G+ L    +  N VI 
Sbjct: 258 QVLLSMYSQGCKTDDVSYKILVVAFASAGRTYDSLELLGRMLGSGYILDTKTM--NVVIH 315

Query: 335 LLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
             C   D+    + F  M   G+ P ++TYN +     K ++     K  H+MI+ +++P
Sbjct: 316 KFCKAGDLHEAHQLFKSMCQRGSIPSNVTYNTLIGAFCKAQQPDTAVKLLHQMIQADFKP 375

Query: 395 TPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 439
             +   + I         E A  I+  ++++G  P   S   L +
Sbjct: 376 NVITYNSIIKSFCREQREEEARGIFQMMVDSGCFPDRVSYTTLKI 420



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/358 (19%), Positives = 139/358 (38%), Gaps = 73/358 (20%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           ++  +   +C AG++ +A+   D M  +GV  +VV   +++  +C    + S+AL    R
Sbjct: 32  SYGILMQGFCKAGEFQQALELLDEMKSNGVRPNVVIHTTIIRGLC-TAGKVSQALLHFRR 90

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           + +   P+  +++IL++   K G   EA     EMV++   +P +V+ Y   +    + +
Sbjct: 91  IGEDCAPNVYTYSILVDALCKSGQPHEAYGLVTEMVKK-GCSP-NVVTYNALIDGFRKLE 148

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND------------------------ 304
           ++DE L  L+ M    C   +  ++  LDI  K N                         
Sbjct: 149 RLDEVLMLLKEMSQRGCRADVITYTMILDIFCKNNSIDEAYRLLNALEKRNVVTYNSLFT 208

Query: 305 ---------STHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
                    +T A+ L + M+  G    PN + Y  V+ +LC N  +D  ++    M   
Sbjct: 209 ALSTAEGDRTTEALSLLEKMIQEGTR--PNQVNYRTVLLMLCKNSRLDEAYQVLLSMYSQ 266

Query: 356 GAFPDSLTY-----------------------------------NMIFECLIKNKRVHEV 380
           G   D ++Y                                   N++     K   +HE 
Sbjct: 267 GCKTDDVSYKILVVAFASAGRTYDSLELLGRMLGSGYILDTKTMNVVIHKFCKAGDLHEA 326

Query: 381 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 438
            + F  M +    P+ +   T I     A +P+ A+++ + +++    P   + N ++
Sbjct: 327 HQLFKSMCQRGSIPSNVTYNTLIGAFCKAQQPDTAVKLLHQMIQADFKPNVITYNSII 384



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 1/136 (0%)

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           N + Y  ++   C   +        D+M  +G  P+ + +  I   L    +V +    F
Sbjct: 29  NEVSYGILMQGFCKAGEFQQALELLDEMKSNGVRPNVVIHTTIIRGLCTAGKVSQALLHF 88

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
              I  +  P     +  +  L  + +P  A  +   +++ G  P   + N L+ G R L
Sbjct: 89  RR-IGEDCAPNVYTYSILVDALCKSGQPHEAYGLVTEMVKKGCSPNVVTYNALIDGFRKL 147

Query: 445 GRLSDVRRFAEEMLNR 460
            RL +V    +EM  R
Sbjct: 148 ERLDEVLMLLKEMSQR 163


>gi|218184813|gb|EEC67240.1| hypothetical protein OsI_34171 [Oryza sativa Indica Group]
          Length = 458

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/380 (21%), Positives = 167/380 (43%), Gaps = 15/380 (3%)

Query: 90  LSYDSPSSAVDFFRWAGRG--QRLSP--YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGV 144
           ++ DSP++AV  F    R     ++P    +++++    + GR +  + A+  V+K+   
Sbjct: 68  VARDSPAAAVSLFNRMARAGADEVTPDLCTYSILIGCCCRAGRLDLGFAALGNVIKKGFR 127

Query: 145 LSLPTFASIFDSYCGAGKYDEAV-MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRAL 203
           +   TFA +    C   +  +A+ +    M+      DV +   LL  +C  EN++  AL
Sbjct: 128 VEAITFAPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLC-DENRSQEAL 186

Query: 204 EFLNRVK----KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYET 259
           E L+ +         PD  S+  ++ G+ KEG+ ++A  T+ EM+ R   +P +V+ Y +
Sbjct: 187 ELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLGR-RISP-NVVTYSS 244

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG 319
            +  L + + +D+A++ L  M      P    +S+ L            +   + M   G
Sbjct: 245 IIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYSSILHGYCSSGQPKEDIGTLNKMRSDG 304

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
               PN++ Y +++  LC N       + FD M   G  PD  TY  + +       + E
Sbjct: 305 VE--PNVVTYRSLMNYLCKNGRCTKARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVE 362

Query: 380 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 439
           +      M++N  QP        I      ++ + A+ +++ + ++G+ P       ++ 
Sbjct: 363 MHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVID 422

Query: 440 GLRNLGRLSDVRRFAEEMLN 459
            L   G + D   + E+M++
Sbjct: 423 VLCKSGSVDDAMLYFEQMID 442



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 114/256 (44%), Gaps = 42/256 (16%)

Query: 108 GQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
           G+R+SP    ++ ++  L K    ++    +  M ++GV+    T++SI   YC +G+  
Sbjct: 232 GRRISPNVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYSSILHGYCSSGQPK 291

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
           E + + + M   GVE +VV   SL++ +C+    T     F +  K+ ++PD  ++  LL
Sbjct: 292 EDIGTLNKMRSDGVEPNVVTYRSLMNYLCKNGRCTKARKIFDSMTKRGLEPDIATYRTLL 351

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           +G+  +G + E +     MV R    P+H + +   +    + ++VD+A+     M+   
Sbjct: 352 QGYATKGALVEMHALLDLMV-RNGIQPDHHV-FNILICAYAKQEKVDQAMLVFSKMRQH- 408

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
                                             G N  PN++ Y  VI +LC +  VD+
Sbjct: 409 ----------------------------------GLN--PNVVCYGTVIDVLCKSGSVDD 432

Query: 345 VFRFFDQMVFHGAFPD 360
              +F+QM+  G  P+
Sbjct: 433 AMLYFEQMIDEGLTPN 448



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/286 (22%), Positives = 126/286 (44%), Gaps = 10/286 (3%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKED-GVLSLP---TFASIFDSYCGAGKYDEAVMS 169
           ++  +++  L    R ++    + +M +D G  S P   ++ ++ + +   G  D+A  +
Sbjct: 167 FSCTILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYST 226

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWE 228
           +  M    +  +VV  +S+++A+C+ +    +A+E LN  VK  V PD  +++ +L G+ 
Sbjct: 227 YHEMLGRRISPNVVTYSSIIAALCKAQ-AMDKAMEVLNTMVKNGVMPDCMTYSSILHGYC 285

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
             G  +E   T  +M  R +    +V+ Y + +  L +  +  +A K    M      P 
Sbjct: 286 SSGQPKEDIGTLNKM--RSDGVEPNVVTYRSLMNYLCKNGRCTKARKIFDSMTKRGLEPD 343

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
           +  +   L              L D+MV  G  + P+  ++N +I      + VD     
Sbjct: 344 IATYRTLLQGYATKGALVEMHALLDLMVRNG--IQPDHHVFNILICAYAKQEKVDQAMLV 401

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
           F +M  HG  P+ + Y  + + L K+  V +   +F +MI     P
Sbjct: 402 FSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTP 447



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 64/308 (20%), Positives = 130/308 (42%), Gaps = 10/308 (3%)

Query: 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI----VD 214
           G    + A    D + + G    + + N  L+ + R  +  + A+   NR+ +     V 
Sbjct: 35  GGSGTEGARHVLDELPLRGWGASIYSFNRTLTDVAR--DSPAAAVSLFNRMARAGADEVT 92

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           PD  +++IL+    + G ++      G ++++  +  E  + +   L  L   K+  +A+
Sbjct: 93  PDLCTYSILIGCCCRAGRLDLGFAALGNVIKK-GFRVE-AITFAPLLKGLCADKRTSDAM 150

Query: 275 KF-LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG-IGFNLMPNLIMYNAV 332
              LR M   +C P +   +  L  L   N S  A++L  +M    G    P+++ Y  V
Sbjct: 151 DIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTV 210

Query: 333 IGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 392
           I       D D  +  + +M+     P+ +TY+ I   L K + + +  +  + M+KN  
Sbjct: 211 INGFFKEGDSDKAYSTYHEMLGRRISPNVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGV 270

Query: 393 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 452
            P  +  ++ +     + +P+  I   N +  +G+ P   +   L+  L   GR +  R+
Sbjct: 271 MPDCMTYSSILHGYCSSGQPKEDIGTLNKMRSDGVEPNVVTYRSLMNYLCKNGRCTKARK 330

Query: 453 FAEEMLNR 460
             + M  R
Sbjct: 331 IFDSMTKR 338


>gi|359473479|ref|XP_002267299.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g13630-like [Vitis
           vinifera]
          Length = 829

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/351 (21%), Positives = 155/351 (44%), Gaps = 7/351 (1%)

Query: 127 GRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAV 185
           G  E+ +     M   G+ LS+ T+  +  S C +G+ DEAV+    M + G++ D++  
Sbjct: 389 GNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTY 448

Query: 186 NSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244
           + L+  +C++      A+E    +  K + P+    + ++ G  ++G + EA   F  + 
Sbjct: 449 SVLIHGLCKR-GAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVT 507

Query: 245 ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 304
           +      E ++ Y   +    +   + EA++  + +  +   PT+  F++ +    K   
Sbjct: 508 KSDV--AEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGK 565

Query: 305 STHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTY 364
              AV+L D +   G  L+P  + Y  ++   C   D+ ++F    +M      P  +TY
Sbjct: 566 LAEAVKLLDTIKVHG--LVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITY 623

Query: 365 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 424
            ++ + L K  R+HE  +    M      P  +   T I     A + + A ++ N +L+
Sbjct: 624 TVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQ 683

Query: 425 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKA 475
           + + P   + N L+ GL   G L D  R    + ++ I + +V    + KA
Sbjct: 684 HSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIKA 734



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 110/474 (23%), Positives = 196/474 (41%), Gaps = 43/474 (9%)

Query: 50  SSSARIICEILAHASSD-DIESA----LACTGIIPTPDLVHEVL-----------QLSYD 93
           S SA  +CE+L ++  D D+ +     LAC       ++VH+ L           Q+S  
Sbjct: 147 SGSAPSLCELLCNSFRDWDLNNVVWDMLACA--YSRAEMVHDALFVLAKMKVLNLQVSIA 204

Query: 94  SPSSAVDFFR-----W------AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED 142
           + +S +   R     W         G   + Y   +++D L +  R +   +AV  ++E 
Sbjct: 205 TYNSLLYNLRHTDIMWDVYNEIKASGVPQNEYTNPILIDGLCRQSRLQ---DAVTFLRET 261

Query: 143 GVL----SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198
           G      S+ +F ++   +C  G  D A   F +M  +G+  DV + N LL  +C     
Sbjct: 262 GGEEFGPSVVSFNALMSGFCKMGSVDVAKSFFCMMIKYGLLPDVYSYNILLHGLC-VAGS 320

Query: 199 TSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
              ALEF N ++   V+PD  ++ IL  G+   G +  A K    M+     NP+ ++ Y
Sbjct: 321 MEEALEFTNDMENHGVEPDIVTYNILANGFRILGLISGAWKVVQRMLLN-GLNPD-LVTY 378

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317
              +    +   ++E+ K    M  +    ++  ++  L  L K      AV L   M  
Sbjct: 379 TILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEV 438

Query: 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
           IG  L P+L+ Y+ +I  LC    V+     +++M     +P+S   + I   L +   +
Sbjct: 439 IG--LKPDLLTYSVLIHGLCKRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAI 496

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 437
            E + +F  + K++     +     I           A+  +  I+E GI P   + N L
Sbjct: 497 SEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSL 556

Query: 438 LVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLE 491
           + G    G+L++  +  + +    ++   VT   L    Y E   M  +FD L 
Sbjct: 557 IYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNG-YCEEGDMHSMFDMLH 609



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 138/321 (42%), Gaps = 15/321 (4%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N+M+D   K G   +   + + + E G+  ++ TF S+   +C  GK  EAV   D + 
Sbjct: 518 YNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIK 577

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNV 233
           +HG+    V   +L++  C +E       + L+ ++ K + P   ++ ++++G  KEG +
Sbjct: 578 VHGLVPTSVTYTTLMNGYC-EEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRL 636

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP---TLK 290
            E+ +    M  R  + P+ +  Y T + +  +   + +A +    M   +  P   T  
Sbjct: 637 HESVQLLKYMYARGLF-PDQI-TYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYN 694

Query: 291 FFSNALDILVKLNDSTHA-VQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
              N L +   L D+    V L D  + +        + Y  +I   C   DV N   FF
Sbjct: 695 VLINGLCVYGNLKDADRLLVTLQDQSIRL------TKVAYTTIIKAHCAKGDVQNALVFF 748

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 409
            QMV  G       Y+ +   L K   + + + FF  M+ +   P    C   +     +
Sbjct: 749 HQMVERGFEVSIRDYSAVINRLCKRNLITDAKFFFCMMLTHGIPPDQDICLVMLNAFHRS 808

Query: 410 DEPEIAIEIWNYILENGILPL 430
            +P    EI+  +++ G+LP+
Sbjct: 809 GDPNSVFEIFAMMIKCGLLPV 829



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 91/428 (21%), Positives = 173/428 (40%), Gaps = 55/428 (12%)

Query: 98  AVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           AV F R  G G+   P   ++N ++    K G  +   +   +M + G+L  + ++  + 
Sbjct: 254 AVTFLRETG-GEEFGPSVVSFNALMSGFCKMGSVDVAKSFFCMMIKYGLLPDVYSYNILL 312

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIV 213
              C AG  +EA+   + M  HGVE D+V  N L +   R     S A + + R +   +
Sbjct: 313 HGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGF-RILGLISGAWKVVQRMLLNGL 371

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
           +PD  ++ IL+ G  + GN+EE+ K   +M+   +     ++ Y   L +L +  ++DEA
Sbjct: 372 NPDLVTYTILICGHCQMGNIEESFKLKEKMLS--QGLKLSIVTYTVLLSSLCKSGRIDEA 429

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN-------- 325
           +  L  M+     P L  +S  +  L K      A++L++ M      + PN        
Sbjct: 430 VILLHEMEVIGLKPDLLTYSVLIHGLCKRGAVEEAIELYEEMCSK--RIYPNSFVCSAII 487

Query: 326 ---------------------------LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAF 358
                                      +I+YN +I       ++    R + Q++  G  
Sbjct: 488 SGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGIS 547

Query: 359 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 418
           P  +T+N +     K  ++ E  K    +  +   PT +   T +    +  +     ++
Sbjct: 548 PTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDM 607

Query: 419 WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTM--------- 469
            + +    I P + +   ++ GL   GRL +  +  + M  R +   ++T          
Sbjct: 608 LHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCK 667

Query: 470 -HKLKKAF 476
            H L+KAF
Sbjct: 668 AHDLQKAF 675


>gi|357499781|ref|XP_003620179.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495194|gb|AES76397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 517

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 133/281 (47%), Gaps = 7/281 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y + ++VD   K GR ++  N + +M   G+   + T+ S+ D Y    + ++A   F+ 
Sbjct: 178 YTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGYFLVKQVNKAKSIFNT 237

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEG 231
           M+  GV  D+ + + L++  C+ +     A+E L  +  K + P+  +++ L++G  K G
Sbjct: 238 MAQLGVSPDIQSYSILINGFCKIK-MMDEAMELLKEMHHKQIIPNVVTYSSLIDGLCKSG 296

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            +  A K   EM +R +  P +++ Y + L  L +  QVD A+  L  MK +   P +  
Sbjct: 297 KISYALKLVDEMHDRGQ--PPNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQPNMYT 354

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           ++  +  L +      A ++++ ++  G NL  N+  Y  +I   C+    D       +
Sbjct: 355 YTILIKGLCQSGKLEDARKVFEDLLVKGHNL--NVYTYTVMIQGFCDKGLFDEALTLLSK 412

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 392
           M  +G  P++ TY +I   L K       EK   EMI+  +
Sbjct: 413 MEDNGCIPNAKTYEIIILSLFKKDENEMAEKLLCEMIETNF 453



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 133/293 (45%), Gaps = 13/293 (4%)

Query: 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ----ENQTSRALEFL 206
             I D +C  GK  +AV  F+ M +  +  DV     L+   C++    E +   A+  +
Sbjct: 146 GKIHDKHCIVGKLKDAVDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMI 205

Query: 207 NRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
             +K    P   ++  L++G+     V +A   F  M +    +P+ + +Y   +    +
Sbjct: 206 QGIK----PGVVTYNSLMDGYFLVKQVNKAKSIFNTMAQ-LGVSPD-IQSYSILINGFCK 259

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNL 326
            K +DEA++ L+ M  +   P +  +S+ +D L K    ++A++L D M   G    PN+
Sbjct: 260 IKMMDEAMELLKEMHHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRG--QPPNI 317

Query: 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 386
           + Y++++  LC N  VDN      QM   G  P+  TY ++ + L ++ ++ +  K F +
Sbjct: 318 VTYSSILDALCKNHQVDNAIALLTQMKNQGIQPNMYTYTILIKGLCQSGKLEDARKVFED 377

Query: 387 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 439
           ++              I    D    + A+ + + + +NG +P  A   E+++
Sbjct: 378 LLVKGHNLNVYTYTVMIQGFCDKGLFDEALTLLSKMEDNGCIP-NAKTYEIII 429



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 84/371 (22%), Positives = 163/371 (43%), Gaps = 18/371 (4%)

Query: 83  LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFE-------QMWNA 135
           L++   QL +  PS+     +    G + +    N ++  L  NG+         ++ +A
Sbjct: 103 LINSFCQLGH-IPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKLKDA 161

Query: 136 V----RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
           V    +++ E+    + TF  + D +C  G+  EA     +M + G++  VV  NSL+  
Sbjct: 162 VDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDG 221

Query: 192 ICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
               + Q ++A    N + ++ V PD  S++IL+ G+ K   ++EA +   EM  + +  
Sbjct: 222 YFLVK-QVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHK-QII 279

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P +V+ Y + +  L +  ++  ALK +  M      P +  +S+ LD L K +   +A+ 
Sbjct: 280 P-NVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIA 338

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
           L   M   G  + PN+  Y  +I  LC +  +++  + F+ ++  G   +  TY ++ + 
Sbjct: 339 LLTQMKNQG--IQPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKGHNLNVYTYTVMIQG 396

Query: 371 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 430
                   E      +M  N   P        I  L   DE E+A ++   ++E      
Sbjct: 397 FCDKGLFDEALTLLSKMEDNGCIPNAKTYEIIILSLFKKDENEMAEKLLCEMIETNFDGR 456

Query: 431 EASANELLVGL 441
            A  N+L+  +
Sbjct: 457 VALTNDLIASI 467



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 73/346 (21%), Positives = 145/346 (41%), Gaps = 54/346 (15%)

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE---------NQTSRAL 203
           + +S+C  G    A      +   G + + + +N+L+  +C             +   A+
Sbjct: 103 LINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKLKDAV 162

Query: 204 EFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI 262
           +  N+ + + ++PD  +F IL++G+ KEG V+EA      M+   +     V+ Y + + 
Sbjct: 163 DLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMM--IQGIKPGVVTYNSLMD 220

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL 322
                KQV++A      M      P ++ +S  ++   K+     A++L   M      +
Sbjct: 221 GYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHK--QI 278

Query: 323 MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
           +PN++ Y+++I  LC +  +    +  D+M   G  P+ +TY+ I + L KN   H+V+ 
Sbjct: 279 IPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKN---HQVD- 334

Query: 383 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 442
                              AI +L       I   ++ Y +             L+ GL 
Sbjct: 335 ------------------NAIALLTQMKNQGIQPNMYTYTI-------------LIKGLC 363

Query: 443 NLGRLSDVRRFAEEML----NRRILIYEVTMHKL-KKAFYNESRSM 483
             G+L D R+  E++L    N  +  Y V +     K  ++E+ ++
Sbjct: 364 QSGKLEDARKVFEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEALTL 409



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 75/182 (41%), Gaps = 18/182 (9%)

Query: 312 WDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECL 371
           +  ++   FN +P    Y +      NN+DVD+    F++++     P ++ +N I   L
Sbjct: 17  FQFLINTHFNFIP----YFSTSTTFHNNNDVDDAVSLFNRLLQQNPTPPNIEFNKILGSL 72

Query: 372 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 431
           +K+K  H V     +M     +P  +NC   I           A  +   IL+ G  P  
Sbjct: 73  VKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINSFCQLGHIPSAFSVLTKILKMGYKPNT 132

Query: 432 ASANELLVGLRNLGRLSDVR------RFAEEMLNRRIL------IYEVTMHKLKKAFYNE 479
            + N L+ GL   G++ D        + A ++ N+ IL      +Y  T+  L   F  E
Sbjct: 133 ITLNTLIKGLCLNGKIHDKHCIVGKLKDAVDLFNKMILENINPDVYTFTI--LVDGFCKE 190

Query: 480 SR 481
            R
Sbjct: 191 GR 192


>gi|449479180|ref|XP_004155527.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
           mitochondrial-like [Cucumis sativus]
          Length = 653

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/408 (21%), Positives = 161/408 (39%), Gaps = 40/408 (9%)

Query: 86  EVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV- 144
           E+L  S D     + FF    RG  ++  A N ++   G  G  E++    R MKE+G+ 
Sbjct: 158 ELLTFSADLVKIRLVFFELKDRGLLMTESAANSLIKSFGNLGLVEELLWVWRRMKENGID 217

Query: 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204
            SL T+  + +    +   + A   F+VM    +  D V  N ++   C+         +
Sbjct: 218 PSLYTYNFLVNGLVNSMFIESAEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGKLQKAMEK 277

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           F +   K V PD  ++  L++    E + +     + EM ER    P H  +Y   +  L
Sbjct: 278 FRDMEMKNVKPDKITYMTLIQACYSERDFDTCLSLYLEMEERGLEIPPH--SYSLVIGGL 335

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
            + ++  EA      M  + C   +  ++  +D   K      A++L++ M   GF   P
Sbjct: 336 CKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFE--P 393

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFD---------------------------------- 350
           + + Y+ ++  LC +  +D+    FD                                  
Sbjct: 394 DAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAENLF 453

Query: 351 -QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 409
            +M   G   DS  YN I + L K+ ++ +    F  M +     T       I  L   
Sbjct: 454 EEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGLFKE 513

Query: 410 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
            + E AI+ W+ +++ GI P  AS   L +GL   G+++   +  +++
Sbjct: 514 HKNEEAIKFWDKMIDKGITPTVASFRALAIGLCLCGKVARACKILDDL 561


>gi|356557251|ref|XP_003546931.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Glycine max]
          Length = 808

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 149/352 (42%), Gaps = 5/352 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N M++   K GR ++    +   KE G+L    ++  +  +YC  G Y +A      ++
Sbjct: 344 YNTMINFSCKGGRIKEADEFLEKAKERGLLPNKFSYTPLMHAYCKQGDYVKAAGMLFRIA 403

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G + D+V+  + +  +          +     ++K V PD   + +L+ G  K G   
Sbjct: 404 EIGEKPDLVSYGAFIHGVVVHGEIDVALMVREKMMEKGVFPDAQIYNVLMSGLCKNGRFP 463

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
                  EM++R    P+ V  + T +   IR  ++DEA+K  +V+  +   P +  ++ 
Sbjct: 464 AMKLLLSEMLDR-NVQPD-VYVFATLMDGFIRNGELDEAIKIFKVIIRKGVDPGIVGYNA 521

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
            +    K    T A+   + M  +  +  P+   Y+ VI       D+ +  + F QM+ 
Sbjct: 522 MIKGFCKFGKMTDALSCLNKMKNV--HHAPDEYTYSTVIDGYVKQHDMSSALKMFGQMMK 579

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 414
           H   P+ +TY  +     K   +   EK F  M   +  P  +   T +     A +PE 
Sbjct: 580 HKFKPNVITYTSLINGFCKKADMIRAEKVFRGMKSFDLVPNVVTYTTLVGGFFKAGKPEK 639

Query: 415 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYE 466
           A  I+  +L NG  P +A+ + L+ GL N      +    + M N R LI +
Sbjct: 640 ATSIFELMLMNGCPPNDATFHYLINGLTNTATSPVLIEEKDSMENERSLILD 691



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 148/358 (41%), Gaps = 41/358 (11%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAG 161
           RW G+G       +N+++D   K G  +     ++ +K  GVL ++ T+ ++ + +C AG
Sbjct: 227 RW-GKGCVPHVVFYNMIIDGYCKKGDLQCATRTLKELKMKGVLPTVETYGALINGFCKAG 285

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221
           +++        M+  G+  +V   N+++ A            EF                
Sbjct: 286 EFEAVDQLLTEMAARGLNMNVKVFNNVIDA------------EF---------------- 317

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
                  K G V +A +T   M E     P+ +  Y T +    +G ++ EA +FL   K
Sbjct: 318 -------KYGLVTKAAETMRRMAE-MGCGPD-ITTYNTMINFSCKGGRIKEADEFLEKAK 368

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
                P    ++  +    K  D   A  +   +  IG    P+L+ Y A I  +  + +
Sbjct: 369 ERGLLPNKFSYTPLMHAYCKQGDYVKAAGMLFRIAEIGEK--PDLVSYGAFIHGVVVHGE 426

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
           +D      ++M+  G FPD+  YN++   L KN R   ++    EM+    QP     AT
Sbjct: 427 IDVALMVREKMMEKGVFPDAQIYNVLMSGLCKNGRFPAMKLLLSEMLDRNVQPDVYVFAT 486

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
            +   +   E + AI+I+  I+  G+ P     N ++ G    G+++D      +M N
Sbjct: 487 LMDGFIRNGELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFGKMTDALSCLNKMKN 544



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 109/490 (22%), Positives = 195/490 (39%), Gaps = 62/490 (12%)

Query: 21  SSTTTSPTSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPT 80
           S  T S      H       P  ++   +S   RI+     H   D +ES  A + ++  
Sbjct: 2   SKATLSRIKPRQHPKGSSSLPPRINY-LVSDVIRIL---KTHQWQDSLESRFAESKVV-V 56

Query: 81  PDLVHEVLQLSYDSPSSAVDFFRWAGR---GQRLSPYAWNLMVDVLGKNGRFEQMWNAVR 137
            D+ H V+   +D+   A+ FF WA        L   A + ++ +L     F ++   + 
Sbjct: 57  SDVAHFVIDRVHDA-ELALKFFDWASTRPFSCSLDGVAHSSLLKLLASFRVFPEIELVLE 115

Query: 138 VMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSF-DVMSMHGVEQDVVAVNSLLSAICRQ 195
            MK   +  +   F+++  +Y  +G  D A+  F  V  MH     VVA NSLL+ + + 
Sbjct: 116 NMKAQHLKPTREAFSALILAYGESGSLDRALQLFHTVREMHNCLPTVVASNSLLNGLVKS 175

Query: 196 ENQTSRALEFLNRVKKIVDPDG---DSF--AILLEGWEKEGNVEEANKTFGEMVERFEWN 250
             +   AL+  +++ +  D  G   D++  +I+++G    G +EE     G  + +  W 
Sbjct: 176 -GKVDVALQLYDKMLQTDDGTGAVVDNYTTSIVVKGLCNLGKIEE-----GRRLVKDRWG 229

Query: 251 PE---HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 307
                HV+ Y   +    +   +  A + L+ +K +   PT++ +   ++   K  +   
Sbjct: 230 KGCVPHVVFYNMIIDGYCKKGDLQCATRTLKELKMKGVLPTVETYGALINGFCKAGEFEA 289

Query: 308 AVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMI 367
             QL   M   G N+  N+ ++N VI        V        +M   G  PD  TYN +
Sbjct: 290 VDQLLTEMAARGLNM--NVKVFNNVIDAEFKYGLVTKAAETMRRMAEMGCGPDITTYNTM 347

Query: 368 FECLIKNKRVHEVEKFFHE-----MIKNEWQPTPLNCA--------TAITMLLDA----- 409
                K  R+ E ++F  +     ++ N++  TPL  A         A  ML        
Sbjct: 348 INFSCKGGRIKEADEFLEKAKERGLLPNKFSYTPLMHAYCKQGDYVKAAGMLFRIAEIGE 407

Query: 410 -----------------DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 452
                             E ++A+ +   ++E G+ P     N L+ GL   GR   ++ 
Sbjct: 408 KPDLVSYGAFIHGVVVHGEIDVALMVREKMMEKGVFPDAQIYNVLMSGLCKNGRFPAMKL 467

Query: 453 FAEEMLNRRI 462
              EML+R +
Sbjct: 468 LLSEMLDRNV 477



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/342 (21%), Positives = 142/342 (41%), Gaps = 56/342 (16%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N+++  L KNGRF  M   +  M +  V   +  FA++ D +   G+ DEA+  F V+ 
Sbjct: 449 YNVLMSGLCKNGRFPAMKLLLSEMLDRNVQPDVYVFATLMDGFIRNGELDEAIKIFKVII 508

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD-PDGDSFAILLEGWEKEGNV 233
             GV+  +V  N+++   C+    T  AL  LN++K +   PD  +++ +++G+ K+ ++
Sbjct: 509 RKGVDPGIVGYNAMIKGFCKFGKMTD-ALSCLNKMKNVHHAPDEYTYSTVIDGYVKQHDM 567

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
             A K FG+M+ + ++ P +V+ Y + +    +   +  A K  R MK  +  P +  ++
Sbjct: 568 SSALKMFGQMM-KHKFKP-NVITYTSLINGFCKKADMIRAEKVFRGMKSFDLVPNVVTYT 625

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIG---------------------------------- 319
             +    K      A  ++++M+  G                                  
Sbjct: 626 TLVGGFFKAGKPEKATSIFELMLMNGCPPNDATFHYLINGLTNTATSPVLIEEKDSMENE 685

Query: 320 -------FNLMPN------LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM 366
                  F +M +      +  YN+VI  LC +  VD       +M+  G   DS+ +  
Sbjct: 686 RSLILDFFTMMLSEGWDQVIAAYNSVIVCLCKHGMVDTAQLLLTKMLTKGFLIDSVCFTA 745

Query: 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
           +   L    +  E    +  +I  +     L  A   ++ LD
Sbjct: 746 MLHGLCHKGKSKE----WRNIISCDLNKIELQTAVKYSLTLD 783


>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
 gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/384 (22%), Positives = 153/384 (39%), Gaps = 44/384 (11%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            ++ +++ L K G        ++ M+E G   ++  +++I DS C      EA+     M
Sbjct: 84  TYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEM 143

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G+  +VV  +S+L   C           F   V++ V PD  +F IL++G  KEG +
Sbjct: 144 VNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMI 203

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            EA   F  M+E+      +V  Y   +       Q+DEA K   +M  + C P+++ + 
Sbjct: 204 LEAQCVFETMIEK--GVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSY- 260

Query: 294 NALDILVK--------------LNDSTH------AVQLWDIMVGI--------------- 318
              +IL+K              L + +H       V    +M G                
Sbjct: 261 ---NILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEE 317

Query: 319 --GFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
              + L+P+L+ Y+ V+  LC    +D  F     M      P+   Y ++ + +    +
Sbjct: 318 MRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGK 377

Query: 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 436
           +    + F  +     QP  +     I+ LL       A E++  +  +G LP   + N 
Sbjct: 378 LEAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNV 437

Query: 437 LLVGLRNLGRLSDVRRFAEEMLNR 460
           ++ G    G  S+  R  EEM+ R
Sbjct: 438 IIQGFLRNGDTSNAGRLIEEMVGR 461



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/347 (22%), Positives = 158/347 (45%), Gaps = 12/347 (3%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF+++ +      K  +AV  FD M   G E DV+  +++++ +C+    T+ A++ L +
Sbjct: 49  TFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIINGLCKM-GSTTMAIQLLKK 107

Query: 209 VK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           ++ K   P+   ++ +++   K+  + EA +   EMV R   +P +V+ Y + L      
Sbjct: 108 MEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNR-GISP-NVVTYSSILHGFCNL 165

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
            + +EA    + M   N  P    F+  +D L K      A  +++ M+  G    PN+ 
Sbjct: 166 GRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVE--PNVN 223

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            YNA++   C+   +D   + F+ MV  G  P   +YN++ +   K+ R+ E +    EM
Sbjct: 224 TYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEM 283

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
                 P  +  +T +        P+ A ++   +   G+LP   + + +L GL   G L
Sbjct: 284 SHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHL 343

Query: 448 SD----VRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSL 490
            +    ++   E  +   I IY + +  +    + +  + R++F +L
Sbjct: 344 DEAFELLKAMQESKIEPNIFIYTILIQGM--CNFGKLEAARELFSNL 388



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 75/338 (22%), Positives = 146/338 (43%), Gaps = 11/338 (3%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+++I +  C  G    A+     M   G + +VV  ++++ ++C+ +   + A+EFL+ 
Sbjct: 84  TYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCK-DKLITEAMEFLSE 142

Query: 209 -VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            V + + P+  +++ +L G+   G   EA   F +MVER    P+ V  +   +  L + 
Sbjct: 143 MVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVER-NVMPDTV-TFNILVDGLSKE 200

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
             + EA      M  +   P +  ++  +D     +    A +L++IMV  G    P++ 
Sbjct: 201 GMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKG--CAPSVR 258

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            YN +I   C +  +D       +M      PD++TY+ + +   ++ R  + +K   EM
Sbjct: 259 SYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEM 318

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
                 P  +  +  +  L      + A E+   + E+ I P       L+ G+ N G+L
Sbjct: 319 RSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKL 378

Query: 448 SDVRRFAEEMLNRRI----LIYEVTMHK-LKKAFYNES 480
              R     +  + I    + Y V +   LK    NE+
Sbjct: 379 EAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEA 416



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/328 (23%), Positives = 135/328 (41%), Gaps = 43/328 (13%)

Query: 77  IIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAV 136
           ++    ++H    L   + ++++ F +   R        +N++VD L K G   +     
Sbjct: 152 VVTYSSILHGFCNLGRSNEATSL-FKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVF 210

Query: 137 RVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
             M E GV  ++ T+ ++ D YC   + DEA   F++M   G    V + N L+   C+ 
Sbjct: 211 ETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKS 270

Query: 196 ENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV 254
             +   A   L  +  K + PD  +++ L++G+ ++G  ++A K   EM   +   P+ +
Sbjct: 271 -GRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEM-RSYGLLPD-L 327

Query: 255 LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL--------------------KFFSN 294
           + Y   L  L +   +DEA + L+ M+     P +                    + FSN
Sbjct: 328 MTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSN 387

Query: 295 ---------------ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
                           +  L+K   S  A +L+  M   G   +PN   YN +I     N
Sbjct: 388 LFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHG--CLPNSCTYNVIIQGFLRN 445

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMI 367
            D  N  R  ++MV  G   DS T+ M+
Sbjct: 446 GDTSNAGRLIEEMVGRGFSADSSTFQML 473



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 71/161 (44%)

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
             L PN + ++ ++  L +   + +  + FD+MV  G  PD +TY+ I   L K      
Sbjct: 41  LGLQPNHVTFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTM 100

Query: 380 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 439
             +   +M +   +P  +  +T I  L        A+E  + ++  GI P   + + +L 
Sbjct: 101 AIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILH 160

Query: 440 GLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 480
           G  NLGR ++     ++M+ R ++   VT + L      E 
Sbjct: 161 GFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEG 201



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 2/164 (1%)

Query: 321 NLMPNLIMYNAVIGLLC--NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVH 378
           N+ P++     +I   C  N+D     F     M   G  P+ +T++ +   L    ++ 
Sbjct: 5   NIRPDVYTLTILINCFCHSNHDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKII 64

Query: 379 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 438
           +  K F EM+K  ++P  +  +T I  L       +AI++   + E G  P     + ++
Sbjct: 65  DAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTII 124

Query: 439 VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 482
             L     +++   F  EM+NR I    VT   +   F N  RS
Sbjct: 125 DSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRS 168


>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
          Length = 735

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/343 (22%), Positives = 144/343 (41%), Gaps = 48/343 (13%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAG 161
           R    G + +   +  ++ V+ K+G+       +R M+E  + L    ++ I D  C  G
Sbjct: 202 RMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDG 261

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221
             D A   F+ M + G + D++   +L+   C        A    + +K+ + PD  +F+
Sbjct: 262 SLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFS 321

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L++ + KEG + EA +   EM++R   +P+ V  Y + +    +  Q+D+A   L +M 
Sbjct: 322 ALIDCFVKEGKLREAEELHKEMIQR-GISPDTV-TYTSLIDGFCKENQLDKANHMLDLMV 379

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
            + C P ++ F                                     N +I   C  + 
Sbjct: 380 SKGCGPNIRTF-------------------------------------NILINGYCKANL 402

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
           +D+    F +M   G   D++TYN + +   +  ++   ++ F EM+    +P  ++   
Sbjct: 403 IDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKI 462

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
            +  L D  EPE A+EI+  I        E S  EL +G+ N+
Sbjct: 463 LLDGLCDNGEPEKALEIFEKI--------EKSKMELDIGIYNI 497



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 80/385 (20%), Positives = 158/385 (41%), Gaps = 50/385 (12%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            ++ +++ L   GR  +    V  M E G   +L T  ++ +  C  GK  +AV+  D M
Sbjct: 144 TFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRM 203

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
              G + + V    +L  +C+   QT+ A+E L +++ + +  D   ++I+++G  K+G+
Sbjct: 204 VETGFQPNEVTYGPVLKVMCKS-GQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGS 262

Query: 233 VEEANKTFGEM-VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           ++ A   F EM ++ F+ +   ++ Y T +       + D+  K LR M      P +  
Sbjct: 263 LDNAFNLFNEMEIKGFKAD---IIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVA 319

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           FS  +D  VK      A +L                                       +
Sbjct: 320 FSALIDCFVKEGKLREAEELHK-------------------------------------E 342

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M+  G  PD++TY  + +   K  ++ +       M+     P        I     A+ 
Sbjct: 343 MIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANL 402

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR----ILIYEV 467
            +  +E++  +   G++    + N L+ G   LG+L   +   +EM++RR    I+ Y++
Sbjct: 403 IDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKI 462

Query: 468 TMHKLKKAFYNESRSMRDIFDSLER 492
            +  L      E     +IF+ +E+
Sbjct: 463 LLDGL--CDNGEPEKALEIFEKIEK 485



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 73/359 (20%), Positives = 147/359 (40%), Gaps = 43/359 (11%)

Query: 75  TGIIPTPDLVHEVLQLSYDSPSSAVD---FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQ 131
           TG  P       VL++   S  +A+      +   R  +L    +++++D L K+G  + 
Sbjct: 206 TGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDN 265

Query: 132 MWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS 190
            +N    M+  G  + +  + ++   +C AG++D+       M    +  DVVA ++L+ 
Sbjct: 266 AFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALID 325

Query: 191 AICRQENQTSRALEFLNR--VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFE 248
             C  +    R  E L++  +++ + PD  ++  L++G+ KE  +++AN     MV +  
Sbjct: 326 --CFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSK-G 382

Query: 249 WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHA 308
             P ++  +   +    +   +D+ L+  R M           ++  +    +L     A
Sbjct: 383 CGP-NIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVA 441

Query: 309 VQLWDIMV----------------GIGFNLMP-----------------NLIMYNAVIGL 335
            +L+  MV                G+  N  P                 ++ +YN +I  
Sbjct: 442 KELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHG 501

Query: 336 LCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
           +CN   VD+ +  F  +   G  PD  TYN++   L K   + E +  F +M ++   P
Sbjct: 502 MCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSP 560



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 71/324 (21%), Positives = 134/324 (41%), Gaps = 24/324 (7%)

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206
           L  F+ +F       +YD  +     M + G+  ++  ++ +++  CR   + S A   +
Sbjct: 72  LIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCR-KLSLAFSAM 130

Query: 207 NRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL- 264
            ++ K+  +PD  +F+ L+ G   EG V EA +    MVE         + ++  LITL 
Sbjct: 131 GKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVE---------MGHKPTLITLN 181

Query: 265 -------IRGKQVDEALKFLRVMKGENCF-PTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
                  + GK  D  L   R++  E  F P    +   L ++ K   +  A++L   M 
Sbjct: 182 ALVNGLCLNGKVSDAVLLIDRMV--ETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKME 239

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
                L  + + Y+ +I  LC +  +DN F  F++M   G   D + Y  +        R
Sbjct: 240 ERKIKL--DAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGR 297

Query: 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 436
             +  K   +MIK +  P  +  +  I   +   +   A E+   +++ GI P   +   
Sbjct: 298 WDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTS 357

Query: 437 LLVGLRNLGRLSDVRRFAEEMLNR 460
           L+ G     +L       + M+++
Sbjct: 358 LIDGFCKENQLDKANHMLDLMVSK 381



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 62/318 (19%), Positives = 126/318 (39%), Gaps = 30/318 (9%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F + + RG       +N ++    + G+ E      + M    V   + ++  + D  C 
Sbjct: 410 FRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCD 469

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
            G+ ++A+  F+ +    +E D+   N ++  +C           F +   K V PD  +
Sbjct: 470 NGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKT 529

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           + I++ G  K+G++ EA+  F +M E  + +  +   Y   +   +      ++ K +  
Sbjct: 530 YNIMIGGLCKKGSLSEADLLFRKMEE--DGHSPNGCTYNILIRAHLGEGDATKSAKLIEE 587

Query: 280 MKGENC-----FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
           +K   C       TL+F   AL  L ++  + H                P++  +  ++ 
Sbjct: 588 IK--RCGFSVDASTLRF---ALSTLARMLKAGHE---------------PDVFTFTTLLR 627

Query: 335 LLC--NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 392
             C   N  V +    F  M   G  P+ +TYN + + L+    + +V     +M +   
Sbjct: 628 PFCLEENASVYDAPTLFKNMKAMGYKPNVVTYNTVIKGLLNGNMISQVPGVLDQMFERGC 687

Query: 393 QPTPLNCATAITMLLDAD 410
           QP  +  +T I+ L   D
Sbjct: 688 QPNAVTKSTFISGLCKQD 705



 Score = 38.9 bits (89), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 62/145 (42%)

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           P LI ++ +  ++      D V     QM   G   +  T +++  C  + +++      
Sbjct: 70  PRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSA 129

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
             ++IK  ++P  +  +T I  L        A+E+ + ++E G  P   + N L+ GL  
Sbjct: 130 MGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCL 189

Query: 444 LGRLSDVRRFAEEMLNRRILIYEVT 468
            G++SD     + M+       EVT
Sbjct: 190 NGKVSDAVLLIDRMVETGFQPNEVT 214


>gi|224129154|ref|XP_002320514.1| predicted protein [Populus trichocarpa]
 gi|222861287|gb|EEE98829.1| predicted protein [Populus trichocarpa]
          Length = 478

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 149/330 (45%), Gaps = 12/330 (3%)

Query: 64  SSDDIESALACTGIIPTPDLVHEVLQ--LSYDSPSSAVDFFRWAGRGQRLSP--YAWNLM 119
           ++ D+ S +   G +PT +  +  L   L +     A+ F+R   R  R+SP  Y +NL+
Sbjct: 147 NATDVFSRMKDYGFLPTVESCNAYLSSLLDFHRVDIALTFYREMRRC-RISPNSYTFNLV 205

Query: 120 VDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGV 178
           +  L K+G+ E+    +R M+  G+  ++ ++ ++   +C  G    A    ++M  +G+
Sbjct: 206 LSALCKSGKLEKAVEVLREMESVGITPNVVSYNTLIAGHCNKGLLSIATKLKNLMGKNGL 265

Query: 179 EQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEAN 237
           E +VV  NSL+   C+ E +   A  F + +K + V P+  ++  L+ G+ + GN   A 
Sbjct: 266 EPNVVTFNSLIHGFCK-EGKLHEANRFFSEMKVMNVTPNTVTYNTLINGYGQVGNSNMAG 324

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297
           K + EM+         +L Y   ++ L +  +  +A   ++ +  EN  P    +S  + 
Sbjct: 325 KVYEEMMR--NGVKADILTYNALILGLCKEGKTKKAAFLVKELDKENLVPNASTYSALIS 382

Query: 298 ILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGA 357
                 +S  A QL+  MV  G +  PN   +  +      N+D +  F     M     
Sbjct: 383 GQCARKNSDRAFQLYKSMVRSGCH--PNEQTFKMLTSAFVKNEDFEGAFNVLMDMFARSM 440

Query: 358 FPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
             DS T   I++ L +  + +   K  HEM
Sbjct: 441 ASDSNTLLEIYDGLCQCGKENLAMKLCHEM 470



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 103/247 (41%), Gaps = 4/247 (1%)

Query: 211 KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270
           ++ D     F  L + +        A   F  M + + + P  V +   +L +L+   +V
Sbjct: 123 RMCDSSPRVFDSLFKTYAHMNKFRNATDVFSRMKD-YGFLPT-VESCNAYLSSLLDFHRV 180

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYN 330
           D AL F R M+     P    F+  L  L K      AV++   M  +G  + PN++ YN
Sbjct: 181 DIALTFYREMRRCRISPNSYTFNLVLSALCKSGKLEKAVEVLREMESVG--ITPNVVSYN 238

Query: 331 AVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 390
            +I   CN   +    +  + M  +G  P+ +T+N +     K  ++HE  +FF EM   
Sbjct: 239 TLIAGHCNKGLLSIATKLKNLMGKNGLEPNVVTFNSLIHGFCKEGKLHEANRFFSEMKVM 298

Query: 391 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 450
              P  +   T I          +A +++  ++ NG+     + N L++GL   G+    
Sbjct: 299 NVTPNTVTYNTLINGYGQVGNSNMAGKVYEEMMRNGVKADILTYNALILGLCKEGKTKKA 358

Query: 451 RRFAEEM 457
               +E+
Sbjct: 359 AFLVKEL 365



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 72/380 (18%), Positives = 156/380 (41%), Gaps = 17/380 (4%)

Query: 91  SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTF 150
           S D P    D   ++ R    SP  ++ +        +F    +    MK+ G L  PT 
Sbjct: 107 SIDLPGKLFDTLLFSYRMCDSSPRVFDSLFKTYAHMNKFRNATDVFSRMKDYGFL--PTV 164

Query: 151 ASI---FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN 207
            S      S     + D A+  +  M    +  +    N +LSA+C+   +  +A+E L 
Sbjct: 165 ESCNAYLSSLLDFHRVDIALTFYREMRRCRISPNSYTFNLVLSALCKS-GKLEKAVEVLR 223

Query: 208 RVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
            ++ + + P+  S+  L+ G   +G +  A K    ++ +    P +V+ + + +    +
Sbjct: 224 EMESVGITPNVVSYNTLIAGHCNKGLLSIATK-LKNLMGKNGLEP-NVVTFNSLIHGFCK 281

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNL 326
             ++ EA +F   MK  N  P    ++  ++   ++ +S  A ++++ M+  G  +  ++
Sbjct: 282 EGKLHEANRFFSEMKVMNVTPNTVTYNTLINGYGQVGNSNMAGKVYEEMMRNG--VKADI 339

Query: 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 386
           + YNA+I  LC             ++      P++ TY+ +       K      + +  
Sbjct: 340 LTYNALILGLCKEGKTKKAAFLVKELDKENLVPNASTYSALISGQCARKNSDRAFQLYKS 399

Query: 387 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV---GLRN 443
           M+++   P         +  +  ++ E A   +N +++     + + +N LL    GL  
Sbjct: 400 MVRSGCHPNEQTFKMLTSAFVKNEDFEGA---FNVLMDMFARSMASDSNTLLEIYDGLCQ 456

Query: 444 LGRLSDVRRFAEEMLNRRIL 463
            G+ +   +   EM  RR++
Sbjct: 457 CGKENLAMKLCHEMEARRLI 476



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 86/202 (42%), Gaps = 4/202 (1%)

Query: 258 ETFLITLIRGKQVDEALKFLRVM--KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
           ++ L TL+  + +D   K    +      C  + + F +       +N   +A  ++  M
Sbjct: 96  QSILRTLLASRSIDLPGKLFDTLLFSYRMCDSSPRVFDSLFKTYAHMNKFRNATDVFSRM 155

Query: 316 VGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 375
              GF  +P +   NA +  L +   VD    F+ +M      P+S T+N++   L K+ 
Sbjct: 156 KDYGF--LPTVESCNAYLSSLLDFHRVDIALTFYREMRRCRISPNSYTFNLVLSALCKSG 213

Query: 376 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 435
           ++ +  +   EM      P  ++  T I    +     IA ++ N + +NG+ P   + N
Sbjct: 214 KLEKAVEVLREMESVGITPNVVSYNTLIAGHCNKGLLSIATKLKNLMGKNGLEPNVVTFN 273

Query: 436 ELLVGLRNLGRLSDVRRFAEEM 457
            L+ G    G+L +  RF  EM
Sbjct: 274 SLIHGFCKEGKLHEANRFFSEM 295


>gi|357504477|ref|XP_003622527.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497542|gb|AES78745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 721

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 97/383 (25%), Positives = 170/383 (44%), Gaps = 22/383 (5%)

Query: 95  PSSAVDFFRWAG-RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM--KEDGVLSLPT-- 149
           P+ A  FF W   +G   +P  + +M+++LG+        N +  +  + +G + L    
Sbjct: 98  PTKAFLFFNWIHEKGFSHNPQTYFIMLEILGREKNLNIARNFLYSIEKRSNGEVKLEDRF 157

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F S+  SY  AG + E+V  F+ M + GV   VV  NS+L  + ++  +T+ A E  + +
Sbjct: 158 FNSLIRSYGEAGLFKESVKLFENMKLIGVSPGVVTFNSVLLVLLKR-GRTNMAKEVYDEM 216

Query: 210 KKI--VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            K   V PD  ++ IL+ G+ K   V+E    F EM   F+ +P+ V+ Y T +  L R 
Sbjct: 217 LKTYGVKPDTYTYNILIRGFCKNSMVDEGFYFFKEMTS-FDCDPD-VVTYNTLVDGLCRA 274

Query: 268 KQVDEALKFLRVM--KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN 325
            ++  A   +  M  K ++  P +  ++  +    +  +   A+ + + M G G  L PN
Sbjct: 275 GKIKVAHNLVNGMSKKCKDLSPDVVTYTTLIRGYCRKQEVDEALDILEEMNGRG--LKPN 332

Query: 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG-AFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           ++ YN +I  LC     D +    +QM   G + PD+ T+N +         + E  K F
Sbjct: 333 IVTYNTLIKGLCEAQKWDKMKEILEQMKGDGGSIPDACTFNTLINSHCCAGNLDEAFKVF 392

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL-------PLEASANEL 437
             M K E      + +  I  L    +   A  +++ + E  IL       PL AS   +
Sbjct: 393 ENMKKLEVSADSASYSVLIRTLCQKGDYGKAEMLFDELFEKEILLSSYGPKPLAASYKCM 452

Query: 438 LVGLRNLGRLSDVRRFAEEMLNR 460
              L   G+     R   +++ R
Sbjct: 453 FQYLCENGKTKKAERVLRQLMKR 475


>gi|222422989|dbj|BAH19478.1| AT2G06000 [Arabidopsis thaliana]
          Length = 536

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 129/299 (43%), Gaps = 7/299 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF  +    CG GK ++A+    VMS  G E D+V  N+L+   C+  N+ ++A E    
Sbjct: 208 TFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKS-NELNKASEMFKD 266

Query: 209 VK--KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
           VK   +  PD  ++  ++ G+ K G + EA+    +M+ R    P +V  +   +    +
Sbjct: 267 VKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDML-RLGIYPTNV-TFNVLVDGYAK 324

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNL 326
             ++  A +    M    CFP +  F++ +D   ++   +   +LW+ M   G  + PN 
Sbjct: 325 AGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARG--MFPNA 382

Query: 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 386
             Y+ +I  LCN + +        Q+      P    YN + +   K  +V+E      E
Sbjct: 383 FTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEE 442

Query: 387 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
           M K + +P  +     I           A+ I++ ++  G  P + + + LL  L   G
Sbjct: 443 MEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAG 501



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 73/354 (20%), Positives = 143/354 (40%), Gaps = 8/354 (2%)

Query: 110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVM 168
           R S + +NL+   L K G  +        MK DGV  +      +  S+   GK   A  
Sbjct: 100 RHSFWTYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATA 159

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
              ++    VE   + VNSLL+ + + +        F   ++     D  +F IL+ G  
Sbjct: 160 L--LLQSFEVEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLC 217

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR-VMKGENCFP 287
             G  E+A +  G M   F   P+ ++ Y T +    +  ++++A +  + V  G  C P
Sbjct: 218 GVGKAEKALELLGVM-SGFGCEPD-IVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSP 275

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFR 347
            +  +++ +    K      A  L D M+ +G  + P  + +N ++       ++     
Sbjct: 276 DVVTYTSMISGYCKAGKMREASSLLDDMLRLG--IYPTNVTFNVLVDGYAKAGEMLTAEE 333

Query: 348 FFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 407
              +M+  G FPD +T+  + +   +  +V +  + + EM      P     +  I  L 
Sbjct: 334 IRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALC 393

Query: 408 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461
           + +    A E+   +    I+P     N ++ G    G++++     EEM  ++
Sbjct: 394 NENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKK 447



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 139/339 (41%), Gaps = 46/339 (13%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+  +  S C AG +D A   F+ M   GV  +   +  L+S+   +       L F   
Sbjct: 105 TYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGK-----LHF--- 156

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
                     + A+LL+ +E EG     N                     + L TL++  
Sbjct: 157 ----------ATALLLQSFEVEGCCMVVN---------------------SLLNTLVKLD 185

Query: 269 QVDEALK-FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
           +V++A+K F   ++ ++C  T K F+  +  L  +  +  A++L  +M G G    P+++
Sbjct: 186 RVEDAMKLFDEHLRFQSCNDT-KTFNILIRGLCGVGKAEKALELLGVMSGFGCE--PDIV 242

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAF--PDSLTYNMIFECLIKNKRVHEVEKFFH 385
            YN +I   C +++++     F   V  G+   PD +TY  +     K  ++ E      
Sbjct: 243 TYNTLIQGFCKSNELNKASEMFKD-VKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLD 301

Query: 386 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
           +M++    PT +     +     A E   A EI   ++  G  P   +   L+ G   +G
Sbjct: 302 DMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVG 361

Query: 446 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMR 484
           ++S   R  EEM  R +     T   L  A  NE+R ++
Sbjct: 362 QVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLK 400


>gi|357481045|ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512143|gb|AES93766.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1084

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/315 (21%), Positives = 140/315 (44%), Gaps = 18/315 (5%)

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPD 216
           CGAGK+D+A      M   G   D    + ++  +C   ++  +A      +K+  + P 
Sbjct: 436 CGAGKFDQAFKIICEMMGKGFVPDDSTYSKVIGFLC-DASKVEKAFSLFEEMKRNGIVPS 494

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
             ++ IL++ + K G +++A K F EM+ +      +V+ Y   +   ++ KQ+  A + 
Sbjct: 495 VYTYTILIDSFCKAGLIQQARKWFDEMLHK--GCTPNVVTYTALIHAYLKAKQMPVADEL 552

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG--------IGFNL------ 322
             +M  E C P +  ++  +D   K      A Q++  M G          F L      
Sbjct: 553 FEMMLLEGCKPNVVTYTALIDGHCKAGQIEKACQIYARMRGDIESSDMDKYFKLDHNNCE 612

Query: 323 MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
            PN+I Y A++  LC  + V       D M+ HG  P+ + Y+ + +   K  ++ + ++
Sbjct: 613 GPNVITYGALVDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQE 672

Query: 383 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 442
            F +M +  + P     ++ I  L   +  ++ +++ + +LEN   P      E++ GL 
Sbjct: 673 VFTKMSERGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLC 732

Query: 443 NLGRLSDVRRFAEEM 457
            +G+  +  +   +M
Sbjct: 733 KIGKTDEAYKLMLKM 747



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 94/443 (21%), Positives = 179/443 (40%), Gaps = 57/443 (12%)

Query: 83  LVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLG---------------- 124
           LV EV+  +  +P   V FF WAGR  G   +P  ++ ++D+LG                
Sbjct: 108 LVVEVMN-NVKNPELCVKFFLWAGRQIGYSHTPQVFDKLLDLLGCNVNADDRVPLKFLME 166

Query: 125 ---------------------KNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGK 162
                                +NG +      +  +K+ G   S  T+ ++   +  A K
Sbjct: 167 IKDDDHELLRRLLNFLVRKCCRNGWWNMALEELGRLKDFGYKPSQTTYNALIQVFLRADK 226

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
            D A +    M  +    D   ++    ++C+   +   A + ++  +  V PD   +  
Sbjct: 227 LDTAYLVKREMLSYAFVMDRYTLSCFAYSLCKG-GKCREAFDLIDEAEDFV-PDTVFYNR 284

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           ++ G  +    EEA      M  R      +V+ Y   L   +R  Q+    + L +M  
Sbjct: 285 MVSGLCEASLFEEAMDILHRM--RSSSCIPNVVTYRILLSGCLRKGQLGRCKRILSMMIT 342

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD- 341
           E C+P  + F++ +    K  D ++A +L+  M+  G    P  ++YN  IG +C+N++ 
Sbjct: 343 EGCYPNREIFNSLIHAYCKSRDYSYAYKLFKKMIKCG--CQPGYLVYNIFIGSVCSNEEQ 400

Query: 342 -----VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 396
                +D V + + +M+  G   + +  +    CL    +  +  K   EM+   + P  
Sbjct: 401 PSSDILDLVEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDQAFKIICEMMGKGFVPDD 460

Query: 397 LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 456
              +  I  L DA + E A  ++  +  NGI+P   +   L+      G +   R++ +E
Sbjct: 461 STYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKWFDE 520

Query: 457 MLNR----RILIYEVTMHKLKKA 475
           ML++     ++ Y   +H   KA
Sbjct: 521 MLHKGCTPNVVTYTALIHAYLKA 543



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 78/357 (21%), Positives = 147/357 (41%), Gaps = 26/357 (7%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
           G+G       ++ ++  L    + E+ ++    MK +G++ S+ T+  + DS+C AG   
Sbjct: 453 GKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQ 512

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
           +A   FD M   G   +VV   +L+ A  + +        F   + +   P+  ++  L+
Sbjct: 513 QARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALI 572

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           +G  K G +E+A + +  M    E                     +D+  K    +   N
Sbjct: 573 DGHCKAGQIEKACQIYARMRGDIE------------------SSDMDKYFK----LDHNN 610

Query: 285 C-FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
           C  P +  +   +D L K N    A +L D M+  G    PN I+Y+AVI   C    + 
Sbjct: 611 CEGPNVITYGALVDGLCKANRVKEAHELLDTMLAHGCE--PNQIVYDAVIDGFCKIGKLQ 668

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
           +    F +M   G  P+  TY+   +CL K+ R+  V K   +M++N   P  +     +
Sbjct: 669 DAQEVFTKMSERGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMV 728

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
             L    + + A ++   + E G  P   +   ++ G    G++        +M ++
Sbjct: 729 DGLCKIGKTDEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSK 785



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 104/511 (20%), Positives = 194/511 (37%), Gaps = 68/511 (13%)

Query: 8   PDFVIKNKIIPSSSSTTTSPTSH-----NPHRPTRPRFPTHLDAPYISSSARIICEILAH 62
           P +++ N  I S  S    P+S                   L+   +S+ AR +C     
Sbjct: 382 PGYLVYNIFIGSVCSNEEQPSSDILDLVEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKF 441

Query: 63  ASSDDIESALACTGIIPTPDLVHEVLQLSYDSPS--SAVDFFRWAGR-GQRLSPYAWNLM 119
             +  I   +   G +P      +V+    D+     A   F    R G   S Y + ++
Sbjct: 442 DQAFKIICEMMGKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTIL 501

Query: 120 VDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGV 178
           +D   K G  +Q       M   G   ++ T+ ++  +Y  A +   A   F++M + G 
Sbjct: 502 IDSFCKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGC 561

Query: 179 EQDVVAVNSLLSAICRQENQTSRALEFL-------------------------------- 206
           + +VV   +L+   C+   Q  +A +                                  
Sbjct: 562 KPNVVTYTALIDGHCKA-GQIEKACQIYARMRGDIESSDMDKYFKLDHNNCEGPNVITYG 620

Query: 207 ---------NRVKKI-----------VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
                    NRVK+             +P+   +  +++G+ K G +++A + F +M ER
Sbjct: 621 ALVDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSER 680

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
             ++P ++  Y +F+  L +  ++D  LK L  M   +C P +  ++  +D L K+  + 
Sbjct: 681 -GYSP-NLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKTD 738

Query: 307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM 366
            A +L   M   G N  PN++ Y A+I     +  ++     F  M   G  P+ +TY +
Sbjct: 739 EAYKLMLKMEEKGCN--PNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFITYRV 796

Query: 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 426
           +      N  + E  K   EM +  W    L+    I     + E   +I + + + EN 
Sbjct: 797 LINHCCSNGLLDEAYKLLDEMKQTYWPKHILSHRKIIEGF--SQEFITSIGLLDELSENE 854

Query: 427 ILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
            +P+++    L+      GRL       EE+
Sbjct: 855 SVPVDSLYRILIDNYIKAGRLEVALDLLEEI 885



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 81/394 (20%), Positives = 150/394 (38%), Gaps = 52/394 (13%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEA 166
           G + S   +N ++ V  +  + +  +   R M     V+   T +    S C  GK  EA
Sbjct: 206 GYKPSQTTYNALIQVFLRADKLDTAYLVKREMLSYAFVMDRYTLSCFAYSLCKGGKCREA 265

Query: 167 VMSFDVM-SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILL 224
              FD++        D V  N ++S +C + +    A++ L+R++     P+  ++ ILL
Sbjct: 266 ---FDLIDEAEDFVPDTVFYNRMVSGLC-EASLFEEAMDILHRMRSSSCIPNVVTYRILL 321

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G  ++G +    +    M+    +    +  + + +    + +    A K  + M    
Sbjct: 322 SGCLRKGQLGRCKRILSMMITEGCYPNREI--FNSLIHAYCKSRDYSYAYKLFKKMIKCG 379

Query: 285 CFPTL--------------------------KFFSNALDILVKLNDST------------ 306
           C P                            K +S  LD+ V LN               
Sbjct: 380 CQPGYLVYNIFIGSVCSNEEQPSSDILDLVEKAYSEMLDLGVVLNKVNVSNFARCLCGAG 439

Query: 307 ---HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLT 363
               A ++   M+G GF  +P+   Y+ VIG LC+   V+  F  F++M  +G  P   T
Sbjct: 440 KFDQAFKIICEMMGKGF--VPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYT 497

Query: 364 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 423
           Y ++ +   K   + +  K+F EM+     P  +     I   L A +  +A E++  +L
Sbjct: 498 YTILIDSFCKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMML 557

Query: 424 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
             G  P   +   L+ G    G++    +    M
Sbjct: 558 LEGCKPNVVTYTALIDGHCKAGQIEKACQIYARM 591



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 90/204 (44%), Gaps = 11/204 (5%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +  M+D  GK+G+ EQ     R M   G   +  T+  + +  C  G  DEA    D M
Sbjct: 758 TYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFITYRVLINHCCSNGLLDEAYKLLDEM 817

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
                 + +++   ++    ++   +   L+ L+  + +  P    + IL++ + K G +
Sbjct: 818 KQTYWPKHILSHRKIIEGFSQEFITSIGLLDELSENESV--PVDSLYRILIDNYIKAGRL 875

Query: 234 EEANKTFGEMVERFEWNPEHVLA----YETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
           E A     +++E    +P H ++    Y + +  L    +VD+AL+    M  +N  P L
Sbjct: 876 EVAL----DLLEEISSSPSHAVSNKYLYASLIENLSHASKVDKALELYASMISKNVVPEL 931

Query: 290 KFFSNALDILVKLNDSTHAVQLWD 313
               + +  L+K++    A+QL D
Sbjct: 932 SILVHLIKGLIKVDKWQEALQLSD 955


>gi|147827256|emb|CAN64312.1| hypothetical protein VITISV_027954 [Vitis vinifera]
          Length = 655

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 97/394 (24%), Positives = 161/394 (40%), Gaps = 64/394 (16%)

Query: 84  VHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE 141
           V + L    +    A++FF W     G   +   +N M+D+LGK   F+ +W  ++ MK 
Sbjct: 292 VRQTLSCYANDWKRALEFFDWVQTQCGFNHTTDTYNGMIDILGKFFEFDLIWVLIQRMKA 351

Query: 142 DGVLSLP---TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198
           D V + P   TF  +F  Y  A   +EA+ ++       + +D  + ++L+ A+C  ++ 
Sbjct: 352 DPV-AYPNHVTFRFVFKRYAAAHLVEEAMNAYYRTEEFNL-RDETSYSNLIDALCEYKHV 409

Query: 199 TSRALEFLNRVKKIV-DPDGDSFAILLEGWEKEGNVEE--------ANKTFGEMVE---R 246
                 FL   K +V + D   + I+L GW K G VEE        A K + EM +   R
Sbjct: 410 IEAEELFLKESKDLVFNDDVKIYNIILRGWFKNGVVEECKSGKPWRAVKLYKEMKKKGIR 469

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
            +     V+AY T +  +   + VD +++  R  K   C P                   
Sbjct: 470 LD-----VVAYNTVIRAIGLSEGVDFSIRVFREXKEVGCEP------------------- 505

Query: 307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM 366
                             N++ YN +I LLC N  +   +  FDQM   G  P+ +TY+ 
Sbjct: 506 ------------------NVVTYNTIIKLLCENGRIREAYGVFDQMREKGYAPNVITYHC 547

Query: 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 426
            F C+ K K   ++ + F  MI +  +P        +              +W  + E G
Sbjct: 548 FFGCIEKPK---QILRTFDRMINSGVRPRMDTYVMLMKKFGRWGFLRPVFIVWKKMEEQG 604

Query: 427 ILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
             P   + N L+  L   G +   R++ EEML +
Sbjct: 605 CSPDACAYNALIDALVQKGMVDLARKYEEEMLAK 638


>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
 gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
          Length = 924

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/433 (21%), Positives = 166/433 (38%), Gaps = 52/433 (12%)

Query: 71  ALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA--GRGQRLSPYAWNLMVDVLGKNGR 128
           +L   G+ P  + + + +  +Y +P   +     A  G  Q   P   +++VD   K GR
Sbjct: 129 SLCAAGLYPQANGLLDQMIRAYPTPPLVLSSVHRALSGSDQGRRPVVLDVLVDTYKKTGR 188

Query: 129 FEQMWNAVRVMKEDGVL------------------------------------SLPTFAS 152
                  V +MK+ G+                                      + T+++
Sbjct: 189 VRDGAEVVLLMKDLGLAPSLRCCNGLLKDLLRADALDLLWKVRGFMEGAGISPDVYTYST 248

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI 212
           + ++YC     + A    + M   G   +VV  N+L+  +CR     + A+E     KK 
Sbjct: 249 LIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCR-----AGAIEEAFGYKKE 303

Query: 213 VD-----PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           ++     PDG ++  ++ G  K G  ++A     EM         +V+ Y T +   +R 
Sbjct: 304 MEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEM--SCAGLMPNVVVYSTLIDGFMRQ 361

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
              DEA K ++ M      P    + N +  L KL     A ++   M  IG+  M + +
Sbjct: 362 GNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGY--MADTM 419

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            YN VI       + +  F   ++M   G  P+  TY++I   L +            +M
Sbjct: 420 TYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQM 479

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
           I +  +P     A  I+         +A E    +    + P     N L++GL N+G++
Sbjct: 480 IADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKM 539

Query: 448 SDVRRFAEEMLNR 460
            +   + +EML +
Sbjct: 540 DEAIEYYDEMLEK 552



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/365 (21%), Positives = 155/365 (42%), Gaps = 15/365 (4%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           R   +SP  Y ++++++ L + G  E+    +  M  DG+  +   +A +   YC  G +
Sbjct: 445 RKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSF 504

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAI 222
             A  +   M+   +  D+   NSL+  +     +   A+E+ +  ++K   P+  ++  
Sbjct: 505 SLACETLKKMTRENLTPDLYCYNSLIIGL-SNVGKMDEAIEYYDEMLEKGFQPNDFTYGG 563

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+ G+   GN+E+A +   +M+     NP   + Y   L    +   +++    L+ M  
Sbjct: 564 LIHGYSMAGNLEKAEQLLHQMLNS-GLNPNDFI-YAQILEGYFKSDNLEKVSSTLKSMLE 621

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
           +   P  + +   +  L        AV +  ++   G  L+P+ ++Y ++I   C   D+
Sbjct: 622 KGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNG--LVPDSLIYGSLISGFCKAADM 679

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
           +      D+M   G  P    YN + +   K+  +      F+ +I    +  P NC T 
Sbjct: 680 EKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSII---CKGLPPNCVTY 736

Query: 403 ITML---LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
            T++     A +   AI+++N +L  G+ P     + L  G  N G L       EEM+ 
Sbjct: 737 TTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEMIA 796

Query: 460 RRILI 464
           R   I
Sbjct: 797 RGYAI 801



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 83/382 (21%), Positives = 164/382 (42%), Gaps = 17/382 (4%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEA 166
           G  L+   +N ++  L + G  E+ +   + M++ G++    T+ +I +  C  G+ D+A
Sbjct: 273 GCSLNVVTYNTLIGGLCRAGAIEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQA 332

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI----VDPDGDSFAI 222
               D MS  G+  +VV  ++L+    RQ N    A E    VK++    V P+  ++  
Sbjct: 333 KCLLDEMSCAGLMPNVVVYSTLIDGFMRQGN----ADEAFKIVKEMSAAGVQPNKITYDN 388

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+ G  K G +  A++   +M  +  +  +  + Y   +   +R    +EA   L  M+ 
Sbjct: 389 LIRGLCKLGRMGRASRILKQMT-KIGYMAD-TMTYNLVIEGHLRQHNKEEAFLLLNEMRK 446

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
               P +  +S  ++ L ++ +S  A  L + M+  G  L PN  +Y  +I   C     
Sbjct: 447 GGISPNVYTYSIIINGLCQIGESERASGLLEQMIADG--LKPNAFVYAPLISGYCREGSF 504

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
                   +M      PD   YN +   L    ++ E  +++ EM++  +QP        
Sbjct: 505 SLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGL 564

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
           I     A   E A ++ + +L +G+ P +    ++L G      L  V    + ML + +
Sbjct: 565 IHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGL 624

Query: 463 L----IYEVTMHKLKKAFYNES 480
           +    +Y + +H L  + + ++
Sbjct: 625 MPDNRLYGIVIHNLSSSGHMQA 646



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 70/349 (20%), Positives = 140/349 (40%), Gaps = 7/349 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           ++ ++D   + G  ++ +  V+ M   GV  +  T+ ++    C  G+   A      M+
Sbjct: 351 YSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMT 410

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNV 233
             G   D +  N ++    RQ N+   A   LN ++K  + P+  +++I++ G  + G  
Sbjct: 411 KIGYMADTMTYNLVIEGHLRQHNK-EEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGES 469

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           E A+    +M+   +    +   Y   +    R      A + L+ M  EN  P L  ++
Sbjct: 470 ERASGLLEQMIA--DGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYN 527

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
           + +  L  +     A++ +D M+  GF   PN   Y  +I       +++   +   QM+
Sbjct: 528 SLIIGLSNVGKMDEAIEYYDEMLEKGFQ--PNDFTYGGLIHGYSMAGNLEKAEQLLHQML 585

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G  P+   Y  I E   K+  + +V      M++    P        I  L  +   +
Sbjct: 586 NSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQ 645

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
            A+ + + I +NG++P       L+ G      +       +EM  + I
Sbjct: 646 AAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGI 694



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 76/389 (19%), Positives = 155/389 (39%), Gaps = 41/389 (10%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSYCGAGKYDEA 166
           G + + + +  ++    + G F      ++ M +E+    L  + S+       GK DEA
Sbjct: 483 GLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEA 542

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLE 225
           +  +D M   G + +      L+       N   +A + L++ +   ++P+   +A +LE
Sbjct: 543 IEYYDEMLEKGFQPNDFTYGGLIHGYSMAGN-LEKAEQLLHQMLNSGLNPNDFIYAQILE 601

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+ K  N+E+ + T   M+E+    P++ L Y   +  L     +  A+  L V++    
Sbjct: 602 GYFKSDNLEKVSSTLKSMLEK-GLMPDNRL-YGIVIHNLSSSGHMQAAVSVLSVIEKNGL 659

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P    + + +    K  D   AV L D M   G    P +  YNA+I   C +DD+ + 
Sbjct: 660 VPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIE--PGISCYNALIDGFCKSDDISHA 717

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL-------N 398
              F+ ++  G  P+ +TY  + +   K   + +    ++EM+     P           
Sbjct: 718 RNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAG 777

Query: 399 CATA--ITMLLDADEPEIA-------------------------IEIWNYILENGILPLE 431
           C+ +  +   L   E  IA                         ++  + +++  I+P  
Sbjct: 778 CSNSGDLQQALFITEEMIARGYAIISSFNTLVHGFCKRGKLQETVKFLHVMMDKDIVPSL 837

Query: 432 ASANELLVGLRNLGRLSDVRRFAEEMLNR 460
            +   +++GL   G+LS+      E+  +
Sbjct: 838 LTVENIVIGLGEAGKLSEAHTIFVELQQK 866



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 77/351 (21%), Positives = 147/351 (41%), Gaps = 11/351 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +NL+++   +    E+ +  +  M++ G+  ++ T++ I +  C  G+ + A    + M 
Sbjct: 421 YNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMI 480

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNV 233
             G++ +      L+S  CR E   S A E L ++ ++ + PD   +  L+ G    G +
Sbjct: 481 ADGLKPNAFVYAPLISGYCR-EGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKM 539

Query: 234 EEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +EA + + EM+E+ F+ N      Y   +        +++A + L  M      P    +
Sbjct: 540 DEAIEYYDEMLEKGFQPND---FTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIY 596

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  L+   K ++          M+  G  LMP+  +Y  VI  L ++  +         +
Sbjct: 597 AQILEGYFKSDNLEKVSSTLKSMLEKG--LMPDNRLYGIVIHNLSSSGHMQAAVSVLSVI 654

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA-ITMLLDADE 411
             +G  PDSL Y  +     K   + +      EM K   +P  ++C  A I     +D+
Sbjct: 655 EKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPG-ISCYNALIDGFCKSDD 713

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
              A  I+N I+  G+ P   +   L+ G    G + D      EML   +
Sbjct: 714 ISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGV 764



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 60/286 (20%), Positives = 127/286 (44%), Gaps = 52/286 (18%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL--SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           + +++  L  +G  +   + + V++++G++  SL  + S+   +C A   ++AV   D M
Sbjct: 631 YGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSL-IYGSLISGFCKAADMEKAVGLLDEM 689

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
           +  G+E  +   N+L+   C+ ++ +     F + + K + P+  ++  L++G+ K G++
Sbjct: 690 AKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDI 749

Query: 234 EEANKTFGEMV------ERFEWN------------------PEHVLAYETFLI----TLI 265
            +A   + EM+      + F ++                   E ++A    +I    TL+
Sbjct: 750 RDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEMIARGYAIISSFNTLV 809

Query: 266 RG----KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFN 321
            G     ++ E +KFL VM  ++  P+L    N   I++ L ++    +   I V     
Sbjct: 810 HGFCKRGKLQETVKFLHVMMDKDIVPSLLTVEN---IVIGLGEAGKLSEAHTIFV----- 861

Query: 322 LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMI 367
               L   NA      ++ D D++   F  M+  G  P  + +NMI
Sbjct: 862 ---ELQQKNA------SHRDTDHLSSLFTDMINQGLVPLDVIHNMI 898


>gi|357455405|ref|XP_003597983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355487031|gb|AES68234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 520

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 93/384 (24%), Positives = 173/384 (45%), Gaps = 32/384 (8%)

Query: 98  AVDFFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFAS 152
           A++FF W     +   S   +NL++D+LGK   F+Q WN +  M+++   SLP   TF  
Sbjct: 93  ALEFFNWVETKFKFQHSTETYNLVLDILGKFFEFQQCWNLIHRMRQNP-HSLPNHTTFRV 151

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR--------------QENQ 198
           +F  Y  A    +AV +F  ++   + +D  + ++L+ A+C               ++NQ
Sbjct: 152 MFKRYVSAHCVQDAVNTFQRLNEFNL-KDETSFSNLIDALCEYKHVLEAQDLVFGDKKNQ 210

Query: 199 TSRALEFLNRVKKIVDPDGDS--FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
           T   +  ++ V   V    ++  F I+L GW K G   +  + + EM  R      H  +
Sbjct: 211 TLTWI--VDGVDGFVASSKNTKIFNIVLRGWYKLGWWSKCWEFWDEMDRRGVEKDLH--S 266

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
           Y  ++  L +G +  +A+K  + MK +     +  ++  +  +        +++++  M 
Sbjct: 267 YSIYMDILSKGGKPWKAVKLFKEMKRKGIQLDVVVYNIVIRAIGVSQGVDFSIRMFCEMK 326

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
            +G N  P ++ YN +I LLC++            M   G  P++++Y   F CL K K 
Sbjct: 327 DLGLN--PTVVTYNTIIRLLCDSYRYKEALTLIRTMRRDGCSPNAVSYQCFFACLEKPKF 384

Query: 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 436
           + E+   F  MI++  +PT       +          +   +WN + E G  P  ++ N 
Sbjct: 385 IIEL---FDGMIESGVRPTMDTYVMLLKKFARWGFLRLVFLVWNRMEELGCSPDASAYNA 441

Query: 437 LLVGLRNLGRLSDVRRFAEEMLNR 460
           L+  L   G +   R++ EEML +
Sbjct: 442 LIDALVEKGLIDMARKYDEEMLAK 465


>gi|125548803|gb|EAY94625.1| hypothetical protein OsI_16402 [Oryza sativa Indica Group]
          Length = 769

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/323 (21%), Positives = 138/323 (42%), Gaps = 18/323 (5%)

Query: 138 VMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           ++  + VL+    A+     CG GK+D+A      M   G   D    + +++ +C    
Sbjct: 413 MLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLC-HAT 471

Query: 198 QTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
           +  +A      +K + V PD  ++ IL++ + K G +E+A   F EM  R       V+ 
Sbjct: 472 KVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEM--RSVGCSPTVVT 529

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
           Y   +   ++ KQV +A      M    C P    +   +D L K  + + A +++  ++
Sbjct: 530 YTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLI 589

Query: 317 GIG--------------FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSL 362
           G                  L PN++ Y A++  LC    VD+     D M+  G  P+ +
Sbjct: 590 GTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHI 649

Query: 363 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 422
            Y+ + +   K  ++   ++ F +M K  + P+     + I  +      ++A+++ + +
Sbjct: 650 VYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQM 709

Query: 423 LENGILPLEASANELLVGLRNLG 445
           L++   P   +   ++ GL  +G
Sbjct: 710 LKDSCTPNVVTYTAMIDGLCRIG 732



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 136/334 (40%), Gaps = 25/334 (7%)

Query: 127 GRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAV 185
           G+F++ +  ++ M   G V    T++ +    C A K ++A + F  M M GV  DV   
Sbjct: 436 GKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTY 495

Query: 186 NSLLSAICRQE--NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
             L+ + C+     Q     E +  V     P   ++  L+  + K   V +AN  F  M
Sbjct: 496 TILIDSFCKAGLIEQAQWLFEEMRSVG--CSPTVVTYTALIHAYLKAKQVPQANDIFHRM 553

Query: 244 VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN----------C------FP 287
           V+     P  V  Y   +  L +   + +A +    + G +          C       P
Sbjct: 554 VDA-GCRPNDV-TYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAP 611

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFR 347
            +  +   +D L K +   HA +L D M+  G    PN I+Y+A+I   C    +D+   
Sbjct: 612 NVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCE--PNHIVYDALIDGFCKAGKIDSAQE 669

Query: 348 FFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 407
            F QM   G  P   TY  + + + K+ R+    K   +M+K+   P  +     I  L 
Sbjct: 670 VFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLC 729

Query: 408 DADEPEIAIEIWNYILENGILPLEASANELLVGL 441
              E E A+++ + + E G  P   +   L+ GL
Sbjct: 730 RIGESEKALKLLSLMEEKGCSPNVVTYTALIDGL 763



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 86/402 (21%), Positives = 169/402 (42%), Gaps = 35/402 (8%)

Query: 74  CTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQ 131
           C G + T  +V  VL    D+P     FF WA R  G   +   ++ + D LG +GR   
Sbjct: 99  CRGFL-TDSVVVAVLGAVRDAPELCARFFLWAERQVGYSHTGACYDALADALGFDGRAR- 156

Query: 132 MWNAVRVMKEDGVLSLPTFASIFD----SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS 187
             +A R+++E G         + +      C  G ++EA+     +   G     V  N+
Sbjct: 157 --DAERLLREIGEEDREVLGRLLNVLVRRCCRGGMWNEALEELGRLKDFGYRPSKVTYNA 214

Query: 188 LLSAICRQENQTSRALEFLNRVKKIVDPDG---DSFAI--LLEGWEKEGNVEEANKTFGE 242
           L+  +      ++  ++   RV+K +   G   D F +        KEG   +A     +
Sbjct: 215 LVQVL-----SSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADAL----D 265

Query: 243 MVERFEWNPEHVLAYETFLIT-LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
           M+ER ++  + VL   T +I+ L+     DEA+ FL  M+  +C P +  +   L   +K
Sbjct: 266 MIEREDFKLDTVLC--THMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLK 323

Query: 302 LNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS 361
                   ++ ++M+  G N  PN  ++N+++   CN  D    ++  ++M   G  P  
Sbjct: 324 KKQLGWCKRIINMMMTEGCN--PNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGY 381

Query: 362 LTYNMIFECLIKNKRVHE------VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 415
           + YN+    +   +++         EK + EM+        +N A     L    + + A
Sbjct: 382 VVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKA 441

Query: 416 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
            ++   ++  G +P  ++ ++++  L +  ++       +EM
Sbjct: 442 FQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEM 483



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 84/382 (21%), Positives = 149/382 (39%), Gaps = 47/382 (12%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEA 166
           G R S   +N +V VL   G+ +  +   + M E G  +   T      + C  G++ +A
Sbjct: 204 GYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADA 263

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLE 225
           +   D++     + D V    ++S +  + +    A+ FL+R++     P+  ++  LL 
Sbjct: 264 L---DMIEREDFKLDTVLCTHMISGL-MEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLS 319

Query: 226 GWEKEGNV------------EEAN---KTFGEMVERFEWNPEHVLAYE------------ 258
           G+ K+  +            E  N     F  +V  +    ++  AY+            
Sbjct: 320 GFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPP 379

Query: 259 -----TFLITLIRGKQ-------VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
                   I  I G++       +D A K    M   NC       +N    L  +    
Sbjct: 380 GYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFD 439

Query: 307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM 366
            A QL   M+  GF  +P+   Y+ VI  LC+   V+  F  F +M   G  PD  TY +
Sbjct: 440 KAFQLIKEMMRKGF--VPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTI 497

Query: 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 426
           + +   K   + + +  F EM      PT +     I   L A +   A +I++ +++ G
Sbjct: 498 LIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAG 557

Query: 427 ILPLEASANELLVGLRNLGRLS 448
             P + +   L+ GL   G +S
Sbjct: 558 CRPNDVTYGALVDGLCKAGNIS 579


>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
 gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/331 (22%), Positives = 140/331 (42%), Gaps = 48/331 (14%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +  ++ V+ K+G+       +R M+E  + L    ++ I D  C  G  D A   F+ M
Sbjct: 214 TYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEM 273

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
            + G + D++   +L+   C        A    + +K+ + PD  +F+ L++ + KEG +
Sbjct: 274 EIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKL 333

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            EA +   EM++R   +P+ V  Y + +    +  Q+D+A   L +M  + C P ++ F 
Sbjct: 334 REAEELHKEMIQR-GISPDTV-TYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTF- 390

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
                                               N +I   C  + +D+    F +M 
Sbjct: 391 ------------------------------------NILINGYCKANLIDDGLELFRKMS 414

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G   D++TYN + +   +  ++   ++ F EM+    +P  ++    +  L D  EPE
Sbjct: 415 LRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPE 474

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNL 444
            A+EI+  I        E S  EL +G+ N+
Sbjct: 475 KALEIFEKI--------EKSKMELDIGIYNI 497



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 80/385 (20%), Positives = 158/385 (41%), Gaps = 50/385 (12%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            ++ +++ L   GR  +    V  M E G   +L T  ++ +  C  GK  +AV+  D M
Sbjct: 144 TFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRM 203

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
              G + + V    +L  +C+   QT+ A+E L +++ + +  D   ++I+++G  K+G+
Sbjct: 204 VETGFQPNEVTYGPVLKVMCKS-GQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGS 262

Query: 233 VEEANKTFGEM-VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           ++ A   F EM ++ F+ +   ++ Y T +       + D+  K LR M      P +  
Sbjct: 263 LDNAFNLFNEMEIKGFKAD---IIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVA 319

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           FS  +D  VK      A +L                                       +
Sbjct: 320 FSALIDCFVKEGKLREAEELHK-------------------------------------E 342

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M+  G  PD++TY  + +   K  ++ +       M+     P        I     A+ 
Sbjct: 343 MIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANL 402

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR----ILIYEV 467
            +  +E++  +   G++    + N L+ G   LG+L   +   +EM++RR    I+ Y++
Sbjct: 403 IDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKI 462

Query: 468 TMHKLKKAFYNESRSMRDIFDSLER 492
            +  L      E     +IF+ +E+
Sbjct: 463 LLDGL--CDNGEPEKALEIFEKIEK 485



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 83/412 (20%), Positives = 168/412 (40%), Gaps = 44/412 (10%)

Query: 75  TGIIPTPDLVHEVLQLSYDSPSSAVD---FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQ 131
           TG  P       VL++   S  +A+      +   R  +L    +++++D L K+G  + 
Sbjct: 206 TGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDN 265

Query: 132 MWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS 190
            +N    M+  G  + +  + ++   +C AG++D+       M    +  DVVA ++L+ 
Sbjct: 266 AFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALID 325

Query: 191 AICRQENQTSRALEFLNR--VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFE 248
             C  +    R  E L++  +++ + PD  ++  L++G+ KE  +++AN     MV +  
Sbjct: 326 --CFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSK-G 382

Query: 249 WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHA 308
             P ++  +   +    +   +D+ L+  R M           ++  +    +L     A
Sbjct: 383 CGP-NIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVA 441

Query: 309 VQLWDIMV----------------GIGFNLMP-----------------NLIMYNAVIGL 335
            +L+  MV                G+  N  P                 ++ +YN +I  
Sbjct: 442 KELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHG 501

Query: 336 LCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 395
           +CN   VD+ +  F  +   G  PD  TYN++   L K   + E +  F +M ++   P 
Sbjct: 502 MCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPN 561

Query: 396 PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
                  I   L   +   + ++   I   G   ++AS  +++V + + GRL
Sbjct: 562 GCTYNILIRAHLGEGDATKSAKLIEEIKRCG-FSVDASTVKMVVDMLSDGRL 612



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/304 (22%), Positives = 127/304 (41%), Gaps = 24/304 (7%)

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206
           L  F+ +F       +YD  +     M + G+  ++  ++ +++  CR   + S A   +
Sbjct: 72  LIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCR-KLSLAFSAM 130

Query: 207 NRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL- 264
            ++ K+  +PD  +F+ L+ G   EG V EA +    MVE         + ++  LITL 
Sbjct: 131 GKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVE---------MGHKPTLITLN 181

Query: 265 -------IRGKQVDEALKFLRVMKGENCF-PTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
                  + GK  D  L   R++  E  F P    +   L ++ K   +  A++L   M 
Sbjct: 182 ALVNGLCLNGKVSDAVLLIDRMV--ETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKME 239

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
                L  + + Y+ +I  LC +  +DN F  F++M   G   D + Y  +        R
Sbjct: 240 ERKIKL--DAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGR 297

Query: 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 436
             +  K   +MIK +  P  +  +  I   +   +   A E+   +++ GI P   +   
Sbjct: 298 WDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTS 357

Query: 437 LLVG 440
           L+ G
Sbjct: 358 LIDG 361



 Score = 38.9 bits (89), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 62/145 (42%)

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           P LI ++ +  ++      D V     QM   G   +  T +++  C  + +++      
Sbjct: 70  PRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSA 129

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
             ++IK  ++P  +  +T I  L        A+E+ + ++E G  P   + N L+ GL  
Sbjct: 130 MGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCL 189

Query: 444 LGRLSDVRRFAEEMLNRRILIYEVT 468
            G++SD     + M+       EVT
Sbjct: 190 NGKVSDAVLLIDRMVETGFQPNEVT 214


>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Glycine max]
          Length = 892

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 159/360 (44%), Gaps = 42/360 (11%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG   + Y + +++D L K GR ++    +  M E GV  S+  F ++  SYC  G  ++
Sbjct: 319 RGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMED 378

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILL 224
           AV    +M    V  +V   N L+   CR ++   RA+  LN+ V+  + PD  ++  L+
Sbjct: 379 AVGVLGLMESKKVCPNVRTYNELICGFCRGKSM-DRAMALLNKMVESKLSPDVVTYNTLI 437

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G  + G V+ A++ F  M+ R  ++P+    +  F++ L R  +V EA + L  +K ++
Sbjct: 438 HGLCEVGVVDSASRLFRLMI-RDGFSPDQ-WTFNAFMVCLCRMGRVGEAHQILESLKEKH 495

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
                          VK N+  HA                    Y A+I   C    +++
Sbjct: 496 ---------------VKANE--HA--------------------YTALIDGYCKAGKIEH 518

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
               F +M+     P+S+T+N++ + L K  +V +      +M K + +PT       + 
Sbjct: 519 AASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKFDVKPTLHTYNILVE 578

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 464
            +L   + + A EI N ++ +G  P   +    +    + GRL +      ++ N  +L+
Sbjct: 579 EVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLL 638



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 86/400 (21%), Positives = 145/400 (36%), Gaps = 77/400 (19%)

Query: 46  APYISSSARIICEILAHASSDD--------IESALACTGIIPTPDLVHEVLQLSYDSPSS 97
            P + +   +IC      S D         +ES L+   ++    L+H + ++      S
Sbjct: 392 CPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLS-PDVVTYNTLIHGLCEVGV--VDS 448

Query: 98  AVDFFRWAGRGQRLSPYAW--NLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIF 154
           A   FR   R    SP  W  N  +  L + GR  +    +  +KE  V +    + ++ 
Sbjct: 449 ASRLFRLMIR-DGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTALI 507

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-V 213
           D YC AGK + A   F  M       + +  N ++  + R+E +   A+  +  + K  V
Sbjct: 508 DGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGL-RKEGKVQDAMLLVEDMAKFDV 566

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVE---------------------RFEWNPE 252
            P   ++ IL+E   KE + + AN+    ++                      R E   E
Sbjct: 567 KPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGRLEEAEE 626

Query: 253 HVLA-------YETFLITLIRGKQ-----VDEALKFLRVMKGENCFPTLKFFS------- 293
            V+         ++F+  L+         +D A   LR M G  C P+   +S       
Sbjct: 627 MVIKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFGVLRRMFGTGCEPSYLTYSILMKHLV 686

Query: 294 ---------NALDILVKL-NDSTHAVQLWD-IMVGIGFNL---------MPNLIMYNAVI 333
                    N + + V L N S     +W  I  GI   L         +PNL  Y+ +I
Sbjct: 687 IEKHKKEGSNPVGLDVSLTNISVDNTDIWSKIDFGITTVLFEKMAECGCVPNLNTYSKLI 746

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 373
             LC    ++  F  +  M   G  P  + +N +     K
Sbjct: 747 NGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSLLSSCCK 786



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 90/210 (42%), Gaps = 9/210 (4%)

Query: 256 AYETFLITLIRGKQVDEALKFLRVM---KGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
           +Y   L+ L R   VDE +   + M    G + FP L   +  L+   KL +   A +L+
Sbjct: 153 SYNRLLMCLSRFSMVDEMISLYKEMLTDNGNSVFPNLITLNTMLNSYCKLGNMAVA-RLF 211

Query: 313 DIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 372
            + + +     P+L  Y +++   C NDDV+     F  M    A    ++Y  +   L 
Sbjct: 212 FVRI-LRCEPGPDLFTYTSLVLGYCRNDDVERACGVFCVMPRRNA----VSYTNLIHGLC 266

Query: 373 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 432
           +  ++HE  +F+  M ++   PT       +  L ++     A+ ++  + E G  P   
Sbjct: 267 EAGKLHEALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALSLFGEMRERGCEPNVY 326

Query: 433 SANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
           +   L+  L   GR+ +  +   EM+ + +
Sbjct: 327 TYTVLIDYLCKEGRMDEALKMLNEMVEKGV 356


>gi|15225031|ref|NP_178657.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|42570711|ref|NP_973429.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216767|sp|Q9ZUE9.1|PP149_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g06000
 gi|4006835|gb|AAC95177.1| hypothetical protein [Arabidopsis thaliana]
 gi|110736272|dbj|BAF00106.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250896|gb|AEC05990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330250897|gb|AEC05991.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 536

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 129/299 (43%), Gaps = 7/299 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF  +    CG GK ++A+    VMS  G E D+V  N+L+   C+  N+ ++A E    
Sbjct: 208 TFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKS-NELNKASEMFKD 266

Query: 209 VK--KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
           VK   +  PD  ++  ++ G+ K G + EA+    +M+ R    P +V  +   +    +
Sbjct: 267 VKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDML-RLGIYPTNV-TFNVLVDGYAK 324

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNL 326
             ++  A +    M    CFP +  F++ +D   ++   +   +LW+ M   G  + PN 
Sbjct: 325 AGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARG--MFPNA 382

Query: 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 386
             Y+ +I  LCN + +        Q+      P    YN + +   K  +V+E      E
Sbjct: 383 FTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEE 442

Query: 387 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
           M K + +P  +     I           A+ I++ ++  G  P + + + LL  L   G
Sbjct: 443 MEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAG 501



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 75/358 (20%), Positives = 145/358 (40%), Gaps = 16/358 (4%)

Query: 110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA-- 166
           R S + +NL+   L K G  +        MK DGV  +      +  S+   GK   A  
Sbjct: 100 RHSFWTYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATA 159

Query: 167 --VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
             + SF+V      E   + VNSLL+ + + +        F   ++     D  +F IL+
Sbjct: 160 LLLQSFEV------EGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILI 213

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR-VMKGE 283
            G    G  E+A +  G M   F   P+ ++ Y T +    +  ++++A +  + V  G 
Sbjct: 214 RGLCGVGKAEKALELLGVM-SGFGCEPD-IVTYNTLIQGFCKSNELNKASEMFKDVKSGS 271

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
            C P +  +++ +    K      A  L D M+ +G  + P  + +N ++       ++ 
Sbjct: 272 VCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLG--IYPTNVTFNVLVDGYAKAGEML 329

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
                  +M+  G FPD +T+  + +   +  +V +  + + EM      P     +  I
Sbjct: 330 TAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILI 389

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461
             L + +    A E+   +    I+P     N ++ G    G++++     EEM  ++
Sbjct: 390 NALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKK 447



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 140/342 (40%), Gaps = 46/342 (13%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S  T+  +  S C AG +D A   F+ M   GV  +   +  L+S+   +       L F
Sbjct: 102 SFWTYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGK-----LHF 156

Query: 206 LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
                        + A+LL+ +E EG     N                     + L TL+
Sbjct: 157 -------------ATALLLQSFEVEGCCMVVN---------------------SLLNTLV 182

Query: 266 RGKQVDEALK-FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
           +  +V++A+K F   ++ ++C  T K F+  +  L  +  +  A++L  +M G G    P
Sbjct: 183 KLDRVEDAMKLFDEHLRFQSCNDT-KTFNILIRGLCGVGKAEKALELLGVMSGFGCE--P 239

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAF--PDSLTYNMIFECLIKNKRVHEVEK 382
           +++ YN +I   C +++++     F   V  G+   PD +TY  +     K  ++ E   
Sbjct: 240 DIVTYNTLIQGFCKSNELNKASEMFKD-VKSGSVCSPDVVTYTSMISGYCKAGKMREASS 298

Query: 383 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 442
              +M++    PT +     +     A E   A EI   ++  G  P   +   L+ G  
Sbjct: 299 LLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYC 358

Query: 443 NLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMR 484
            +G++S   R  EEM  R +     T   L  A  NE+R ++
Sbjct: 359 RVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLK 400


>gi|357450627|ref|XP_003595590.1| hypothetical protein MTR_2g049740 [Medicago truncatula]
 gi|355484638|gb|AES65841.1| hypothetical protein MTR_2g049740 [Medicago truncatula]
          Length = 859

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 88/394 (22%), Positives = 161/394 (40%), Gaps = 41/394 (10%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP--TFASIFDSYCGAGKYD 164
           RG   +     +++    K G+ ++    +R ++ED +L +    +  + D YC  G+ +
Sbjct: 290 RGVSRNVVTCTMLMRGYCKKGKMDEAEKLLREVEEDELLVVDERVYGVLVDGYCQMGRME 349

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
           +AV   D M   G++ ++V  N+L+   C+          F+  V   + PD  S+  LL
Sbjct: 350 DAVRIRDEMLRVGLKVNMVICNTLIKGYCKLGQVCEAERVFVGMVDWNLKPDCYSYNTLL 409

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           +G+ +EG V +A     EM+   +     V+ Y T +  L+     D+AL    +M    
Sbjct: 410 DGYCREGKVSKAFMLCEEMLG--DGITPTVVTYNTVIKGLVDVGSYDDALHLWHLMVERG 467

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
             P        LD   K+ DS  A+ LW  ++G GF    + + +N +I  LC    +  
Sbjct: 468 VTPNEISCCTMLDCFFKMGDSDRAMMLWKEILGRGFT--KSTVAFNTMISGLCKMGKLME 525

Query: 345 VFRFFDQMVFHGAFPDSLT-----------------------------------YNMIFE 369
               FD+M   G  PD +T                                   YN + +
Sbjct: 526 AGAVFDRMKELGLSPDEITYRTLSDGYCKNGNVQEAFQIKGVMERQAMSASIEMYNSLID 585

Query: 370 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
            L K +++++V     EM      P  +   T I+   D  + + A  ++  ++E G  P
Sbjct: 586 GLFKIRKLNDVTDLLVEMQTRGLSPNVVTYGTLISGWCDEQKLDKAFHLYFEMIERGFTP 645

Query: 430 LEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
                ++++  L    R+S+     ++ML+  IL
Sbjct: 646 NVVVCSKIVSSLYRDDRISEATVILDKMLDFDIL 679



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 87/356 (24%), Positives = 148/356 (41%), Gaps = 11/356 (3%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
           GRG   S  A+N M+  L K G+  +       MKE G+     T+ ++ D YC  G   
Sbjct: 500 GRGFTKSTVAFNTMISGLCKMGKLMEAGAVFDRMKELGLSPDEITYRTLSDGYCKNGNVQ 559

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAI--CRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
           EA     VM    +   +   NSL+  +   R+ N  +  L  +    + + P+  ++  
Sbjct: 560 EAFQIKGVMERQAMSASIEMYNSLIDGLFKIRKLNDVTDLL--VEMQTRGLSPNVVTYGT 617

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+ GW  E  +++A   + EM+ER  + P +V+     + +L R  ++ EA   L  M  
Sbjct: 618 LISGWCDEQKLDKAFHLYFEMIER-GFTP-NVVVCSKIVSSLYRDDRISEATVILDKMLD 675

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF-NLMPNLIMYNAVIGLLCNNDD 341
              F  L   +   D LVK + +  A ++ D +      N + N I+YN  I  LC +  
Sbjct: 676 ---FDILAVHNKCSDKLVKNDLTLEAQKIADSLDKSDICNSLSNNIVYNIAIDGLCKSGK 732

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
           +D        ++  G  PD+ TY  +      +  V E  K   EM++    P       
Sbjct: 733 LDEARSVLSVLMSRGFLPDNFTYCTLIHACSVSGNVDEAFKLRDEMLEKGLIPNITIYNA 792

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
            I  L      + A  ++  + + G++P   + N L+     +G L    R  E+M
Sbjct: 793 LINGLCKLGNIDRAQRLFYKLYQKGLVPNAVTYNILIGCYCRIGDLDKASRLREKM 848



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 76/379 (20%), Positives = 154/379 (40%), Gaps = 43/379 (11%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F +  G G     Y  +++V+   + GR +     +  M ++G+  ++ T+  + + Y G
Sbjct: 214 FDQIVGTGIVPDVYMCSIVVNAHCQVGRVDVAMEVLEKMVKEGLEPNVVTYNGLVNGYVG 273

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK--IVDPDG 217
            G ++       +MS  GV ++VV    L+   C++  +   A + L  V++  ++  D 
Sbjct: 274 RGDFEGVERVLRLMSERGVSRNVVTCTMLMRGYCKK-GKMDEAEKLLREVEEDELLVVDE 332

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
             + +L++G+ + G +E+A +   EM+ R       V+       TLI+G       K  
Sbjct: 333 RVYGVLVDGYCQMGRMEDAVRIRDEML-RVGLKVNMVICN-----TLIKG-----YCKLG 381

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337
           +V + E  F  +                            + +NL P+   YN ++   C
Sbjct: 382 QVCEAERVFVGM----------------------------VDWNLKPDCYSYNTLLDGYC 413

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
               V   F   ++M+  G  P  +TYN + + L+      +    +H M++    P  +
Sbjct: 414 REGKVSKAFMLCEEMLGDGITPTVVTYNTVIKGLVDVGSYDDALHLWHLMVERGVTPNEI 473

Query: 398 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           +C T +       + + A+ +W  IL  G      + N ++ GL  +G+L +     + M
Sbjct: 474 SCCTMLDCFFKMGDSDRAMMLWKEILGRGFTKSTVAFNTMISGLCKMGKLMEAGAVFDRM 533

Query: 458 LNRRILIYEVTMHKLKKAF 476
               +   E+T   L   +
Sbjct: 534 KELGLSPDEITYRTLSDGY 552



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 67/304 (22%), Positives = 134/304 (44%), Gaps = 18/304 (5%)

Query: 80  TPD-LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYA----WNLMVDVLGKNGRFEQMWN 134
           +PD + +  L   Y    +  + F+  G  +R +  A    +N ++D L K  +   + +
Sbjct: 539 SPDEITYRTLSDGYCKNGNVQEAFQIKGVMERQAMSASIEMYNSLIDGLFKIRKLNDVTD 598

Query: 135 AVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC 193
            +  M+  G+  ++ T+ ++   +C   K D+A   +  M   G   +VV  + ++S++ 
Sbjct: 599 LLVEMQTRGLSPNVVTYGTLISGWCDEQKLDKAFHLYFEMIERGFTPNVVVCSKIVSSLY 658

Query: 194 RQENQTSRALEFLNRVKKIVDPDGDSFAI---LLEGWEKEGNVEEANKTFGEMVERFEWN 250
           R +++ S A   L+++      D D  A+     +   K     EA K    + +    N
Sbjct: 659 R-DDRISEATVILDKM-----LDFDILAVHNKCSDKLVKNDLTLEAQKIADSLDKSDICN 712

Query: 251 P-EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV 309
              + + Y   +  L +  ++DEA   L V+      P    +   +       +   A 
Sbjct: 713 SLSNNIVYNIAIDGLCKSGKLDEARSVLSVLMSRGFLPDNFTYCTLIHACSVSGNVDEAF 772

Query: 310 QLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFE 369
           +L D M+  G  L+PN+ +YNA+I  LC   ++D   R F ++   G  P+++TYN++  
Sbjct: 773 KLRDEMLEKG--LIPNITIYNALINGLCKLGNIDRAQRLFYKLYQKGLVPNAVTYNILIG 830

Query: 370 CLIK 373
           C  +
Sbjct: 831 CYCR 834



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 84/191 (43%), Gaps = 3/191 (1%)

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346
           P L+  S  L  LV+  +   AV ++D +VG G  ++P++ M + V+   C    VD   
Sbjct: 189 PGLRSCSFLLGKLVQKGEGRVAVMVFDQIVGTG--IVPDVYMCSIVVNAHCQVGRVDVAM 246

Query: 347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406
              ++MV  G  P+ +TYN +    +       VE+    M +       + C   +   
Sbjct: 247 EVLEKMVKEGLEPNVVTYNGLVNGYVGRGDFEGVERVLRLMSERGVSRNVVTCTMLMRGY 306

Query: 407 LDADEPEIAIEIWNYILENGILPLEASANELLV-GLRNLGRLSDVRRFAEEMLNRRILIY 465
               + + A ++   + E+ +L ++     +LV G   +GR+ D  R  +EML   + + 
Sbjct: 307 CKKGKMDEAEKLLREVEEDELLVVDERVYGVLVDGYCQMGRMEDAVRIRDEMLRVGLKVN 366

Query: 466 EVTMHKLKKAF 476
            V  + L K +
Sbjct: 367 MVICNTLIKGY 377



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 48/253 (18%), Positives = 94/253 (37%), Gaps = 22/253 (8%)

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENC----------------FPTLKFFSNAL 296
           H L+Y   L  L   +   EA   LR +   +C                +    F S   
Sbjct: 100 HSLSYSILLHILTHARLFPEATTVLRQLMDLHCTNNYRAYAVCNHVFSVYKEFGFCSGVF 159

Query: 297 DILVKL----NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           D+L+K       + HA+ ++D M  IG   +P L   + ++G L    +       FDQ+
Sbjct: 160 DMLMKAFAERGMTKHALYVFDEMSRIG--RVPGLRSCSFLLGKLVQKGEGRVAVMVFDQI 217

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
           V  G  PD    +++     +  RV    +   +M+K   +P  +     +   +   + 
Sbjct: 218 VGTGIVPDVYMCSIVVNAHCQVGRVDVAMEVLEKMVKEGLEPNVVTYNGLVNGYVGRGDF 277

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
           E    +   + E G+     +   L+ G    G++ +  +   E+    +L+ +  ++ +
Sbjct: 278 EGVERVLRLMSERGVSRNVVTCTMLMRGYCKKGKMDEAEKLLREVEEDELLVVDERVYGV 337

Query: 473 KKAFYNESRSMRD 485
               Y +   M D
Sbjct: 338 LVDGYCQMGRMED 350


>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 546

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 86/379 (22%), Positives = 165/379 (43%), Gaps = 15/379 (3%)

Query: 109 QRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDE 165
           +R+ P   ++N++++ L K G+  +  + +  MK  GV  ++ T+ ++ D YC  GK  +
Sbjct: 157 RRIEPTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGK 216

Query: 166 AVMSFDV---MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
              +  +   M   G+  + V  N L+   C+ +N ++    F    ++ V P+  ++  
Sbjct: 217 MYKADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNS 276

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+ G    G V EA     +MV      P +++ +   L    + K V +A +    M  
Sbjct: 277 LINGLCNNGKVNEATALRDQMVNSC-LKP-NIITHNALLNGFCKNKMVKQAGELFDDMPK 334

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
           +   P +  ++  +D   K  +   A  L+ IM+G G  + P++  YN +I  LC   D+
Sbjct: 335 QGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKG--VCPDVSTYNCLIAGLCRKGDL 392

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
           +       +M       D +TYN++ + L     + +  +   EM +   +P+ L   T 
Sbjct: 393 EAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTM 452

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
           I           A+ + + + + G L   A+ N L+ G     +L D      EML + +
Sbjct: 453 IDGYCKEGNLRAALNLRSQMEKVGRLANVATYNVLIKGFCKKDKLEDANGLLNEMLEKGL 512

Query: 463 ----LIYE-VTMHKLKKAF 476
               + YE VT   ++K F
Sbjct: 513 IPNRMTYEIVTEEMMEKGF 531



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 89/385 (23%), Positives = 163/385 (42%), Gaps = 8/385 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F R +  G +LS  + N ++  L K G    M    + M    +  +L +F  + +  C 
Sbjct: 116 FKRASDYGLKLSVTSCNPLMSGLVKVGEIGDMEFVYKEMIRRRIEPTLISFNIVINGLCK 175

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR--QENQTSRALEFLNRVKK-IVDPD 216
            GK ++A    + M + GV  +V+  N+L+   C+  +  +  +A   L  ++   + P+
Sbjct: 176 VGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRADGICPN 235

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
             +F IL++G+ K+ NV  A K F EM  R    P +V+ Y + +  L    +V+EA   
Sbjct: 236 EVTFNILIDGFCKDKNVSAAMKVFAEM-NRQGVKP-NVVTYNSLINGLCNNGKVNEATAL 293

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLL 336
              M      P +   +  L+   K      A +L+D M   G  + PN+  YN +I   
Sbjct: 294 RDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQG--ITPNVTTYNILIDAY 351

Query: 337 CNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 396
           C ++++++ F  +  M+  G  PD  TYN +   L +   +        EM     +   
Sbjct: 352 CKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADL 411

Query: 397 LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 456
           +     I  L +  E + A+ + + +   G+ P + + N ++ G    G L        +
Sbjct: 412 ITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQ 471

Query: 457 MLNRRILIYEVTMHKLKKAFYNESR 481
           M     L    T + L K F  + +
Sbjct: 472 MEKVGRLANVATYNVLIKGFCKKDK 496



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 151/336 (44%), Gaps = 20/336 (5%)

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
           +F   S +G++  V + N L+S + +          +   +++ ++P   SF I++ G  
Sbjct: 115 AFKRASDYGLKLSVTSCNPLMSGLVKVGEIGDMEFVYKEMIRRRIEPTLISFNIVINGLC 174

Query: 229 KEGNVEEANKTFGEMVE--RFEWNPEHVLAYETFLITLIRGKQVDEALK---FLRVMKGE 283
           K G + +A    G+++E  +      +V+ Y T +    +  ++ +  K    L+ M+ +
Sbjct: 175 KVGKLNKA----GDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRAD 230

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
              P    F+  +D   K  + + A++++  M   G  + PN++ YN++I  LCNN  V+
Sbjct: 231 GICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQG--VKPNVVTYNSLINGLCNNGKVN 288

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
                 DQMV     P+ +T+N +     KNK V +  + F +M K    P      T  
Sbjct: 289 EATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPN----VTTY 344

Query: 404 TMLLDA----DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
            +L+DA    +  E A  ++  +L  G+ P  ++ N L+ GL   G L   R    EM  
Sbjct: 345 NILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDT 404

Query: 460 RRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCK 495
           + +    +T + L  +  N+   M+     L+  C+
Sbjct: 405 KHLKADLITYNILIDSLCNKGE-MKKALRLLDEMCR 439



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/295 (21%), Positives = 134/295 (45%), Gaps = 8/295 (2%)

Query: 96  SSAVDFFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL--SLPTFAS 152
           S+A+  F    R G + +   +N +++ L  NG+  +   A+R    +  L  ++ T  +
Sbjct: 253 SAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNE-ATALRDQMVNSCLKPNIITHNA 311

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI 212
           + + +C      +A   FD M   G+  +V   N L+ A C+ EN       +   + K 
Sbjct: 312 LLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKG 371

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
           V PD  ++  L+ G  ++G++E A     EM  +       ++ Y   + +L    ++ +
Sbjct: 372 VCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHL--KADLITYNILIDSLCNKGEMKK 429

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAV 332
           AL+ L  M  +   P+   ++  +D   K  +   A+ L   M  +G   + N+  YN +
Sbjct: 430 ALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGR--LANVATYNVL 487

Query: 333 IGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
           I   C  D +++     ++M+  G  P+ +TY ++ E +++   V ++E   +++
Sbjct: 488 IKGFCKKDKLEDANGLLNEMLEKGLIPNRMTYEIVTEEMMEKGFVPDIEGHLYKV 542


>gi|212274591|ref|NP_001130971.1| GTP binding protein [Zea mays]
 gi|194690592|gb|ACF79380.1| unknown [Zea mays]
 gi|413947420|gb|AFW80069.1| GTP binding protein [Zea mays]
          Length = 535

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 109/475 (22%), Positives = 202/475 (42%), Gaps = 57/475 (12%)

Query: 53  ARIICEILAHASSD--DIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--G 108
           A  + ++L   S+D  D+  AL    +    D++  VLQ    +   A+ FF WA    G
Sbjct: 80  ASQVLKVLKSTSADNTDLSGALHQFAVHMDEDIILMVLQKQRSNWQVALAFFNWAATLPG 139

Query: 109 QRLSPYAWNLMVDVLGKNGR---FEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDE 165
                 A+  M+D+LG+  +     Q+++ +   +   V++   FA + + Y GA K  E
Sbjct: 140 YAHGSRAYTEMLDILGRMKKVRHMRQLFDEIPEERRQVVVTNKMFAVLLNRYAGAHKVQE 199

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPD-GDSFAILL 224
           A+  F +   +G E D+V    LL ++CR ++      E L R KK   P    S+ I+L
Sbjct: 200 AIEVFYLRKDYGFELDLVGFQILLMSLCRYKH--VEEAEALFREKKDEFPHVTKSWNIIL 257

Query: 225 EGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM--K 281
            GW  +G++ +A + + +++  + E +   +  + TF+  L +  ++  A+K  + M  K
Sbjct: 258 NGWCVKGSLRDAQRIWNDIIASKVERD---LFTFGTFINALAKNGRISAAVKLFKQMWEK 314

Query: 282 GEN-------------CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           G N             CF   K    AL+I  ++ND                    ++  
Sbjct: 315 GINPDVAICNCIIDQLCFK--KKIPEALEIFGEMNDRL---------------CQADVAT 357

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           YN +I  +C    ++ V+   D M   G  P++ TY+ I +   K K   +V      M 
Sbjct: 358 YNTLIKYMCKIKRMEKVYELLDDMEAKGCPPNNRTYSYILKTTEKPK---DVIALMQRME 414

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
           +   +         + + +     +   +IW+ +   G  P + S   ++ GL + G+L 
Sbjct: 415 RTGCKLDSDIYNLILNLYIKWKYEKGMQQIWDEMERRGSGPDQRSFTIMVHGLHSQGKLD 474

Query: 449 DVRRFAEEMLNR--------RILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCK 495
           +  ++   M +R        +IL+  + M K   A  ++S SM      L+ R +
Sbjct: 475 EALQYYTTMKSRGMIPEPRTKILVKAMHMKKDGAATEDDSASMAGKHLKLDHRSR 529


>gi|242067353|ref|XP_002448953.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
 gi|241934796|gb|EES07941.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
          Length = 734

 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 93/376 (24%), Positives = 157/376 (41%), Gaps = 14/376 (3%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
           GR    +   +  ++D L K   F++     + M ++GV  +  T+  +   Y   GK+ 
Sbjct: 200 GRSCPPNVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHGYLSIGKWK 259

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAIL 223
           E V   + MS  G++ D     SLL+ +C      S    FL+  V+  + PD   F I 
Sbjct: 260 EVVQMLEKMSARGLKPDCYTYGSLLNYLCALSEMHS----FLDLMVENGLSPDHHIFNIF 315

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
              + K G +++A   F +M  R      +V+ Y   +  L +  +VD+A      M  E
Sbjct: 316 FSAYAKCGMIDKAMDIFNKM--RQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINE 373

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
              P +  F++ +  L  ++    A +L   M+  G  + PN + +N +I  LCN   V 
Sbjct: 374 GVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQG--ICPNAVFFNTLICNLCNVGRVM 431

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
              R  D M   G  PD+ +Y  +        R  E EK F  M+     PT +   T +
Sbjct: 432 EGRRLIDLMEHVGVRPDAFSYTPLISGYCLAGRTDEAEKVFDGMVSIGLSPTEVTYNTLL 491

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR-- 461
                A   + A  ++  +L  G+ P   + N +L GL    R S+ +     M+N    
Sbjct: 492 HGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTK 551

Query: 462 --ILIYEVTMHKLKKA 475
             I  Y + ++ L K+
Sbjct: 552 CDIYTYNIILNGLCKS 567



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 88/401 (21%), Positives = 163/401 (40%), Gaps = 51/401 (12%)

Query: 111 LSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAV 167
           LSP  + +N+      K G  ++  +    M++ G+  ++  + ++ D+ C  G+ D+A 
Sbjct: 305 LSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAE 364

Query: 168 MSFDVMSMHGVEQDVVAVNSLLSAIC------RQENQTSRALE--------FLNRV---- 209
           + F+ M   GV  ++V  NSL+  +C      R E      L+        F N +    
Sbjct: 365 VKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNL 424

Query: 210 ---------KKIVD--------PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
                    ++++D        PD  S+  L+ G+   G  +EA K F  MV     +P 
Sbjct: 425 CNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLAGRTDEAEKVFDGMVS-IGLSPT 483

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
            V  Y T L       ++D+A    R M  +   P +  ++  L  L +    + A +L+
Sbjct: 484 EV-TYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELY 542

Query: 313 DIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 372
             M+  G     ++  YN ++  LC ++ VD  F+ F  +   G   + +T+ ++   L+
Sbjct: 543 LNMINSGTKC--DIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALL 600

Query: 373 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 432
           K  R  +    F  +  N   P  +        L++    E    +++ + +NG  P   
Sbjct: 601 KGGRKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQ 660

Query: 433 SANELLVGLRNLGRLS---------DVRRFAEEMLNRRILI 464
             N L+  L + G +S         D R F+ E     +LI
Sbjct: 661 MLNALVRRLLHRGDISRAGAYLSKLDERNFSVEASTTSLLI 701



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 80/362 (22%), Positives = 148/362 (40%), Gaps = 12/362 (3%)

Query: 137 RVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC 193
           R+++E  +   P   T++ +    C  G+   +  +F ++   G   + + +N LL  +C
Sbjct: 85  RMVRECSIKVAPNTCTYSILIGCLCRMGRLKHSFATFGLILKTGWRVNDIVINQLLKGLC 144

Query: 194 RQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMV-ERFEWNP 251
             +         L R+ ++   PD  S++ILL+G+  E   EEA +    M  +     P
Sbjct: 145 DGKRVGEAMDVLLQRMPELGCTPDTVSYSILLKGFCNENRAEEALELLRMMANDHGRSCP 204

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
            +V+ Y T +  L + +  D A    + M      P    ++  +   + +      VQ+
Sbjct: 205 PNVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQM 264

Query: 312 WDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECL 371
            + M   G  L P+   Y +++  LC    +  +  F D MV +G  PD   +N+ F   
Sbjct: 265 LEKMSARG--LKPDCYTYGSLLNYLC---ALSEMHSFLDLMVENGLSPDHHIFNIFFSAY 319

Query: 372 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 431
            K   + +    F++M ++   P  +N    I  L      + A   +N ++  G+ P  
Sbjct: 320 AKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNI 379

Query: 432 ASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSM--RDIFDS 489
              N L+ GL  + +         EML++ I    V  + L     N  R M  R + D 
Sbjct: 380 VVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDL 439

Query: 490 LE 491
           +E
Sbjct: 440 ME 441



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 76/372 (20%), Positives = 155/372 (41%), Gaps = 13/372 (3%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP----TFASIFDSYCGAGKYDEAVMSF 170
           ++++++       R E+    +R+M  D   S P    T+ ++ D  C A  +D A   F
Sbjct: 171 SYSILLKGFCNENRAEEALELLRMMANDHGRSCPPNVVTYTTVIDGLCKAQLFDRAEGVF 230

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEK 229
             M  +GV+ +    N L+        +    ++ L ++  + + PD  ++  LL     
Sbjct: 231 QQMIDNGVKPNNDTYNCLIHGY-LSIGKWKEVVQMLEKMSARGLKPDCYTYGSLLNYLCA 289

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
              + E +     MVE    +P+H + +  F     +   +D+A+     M+     P +
Sbjct: 290 ---LSEMHSFLDLMVEN-GLSPDHHI-FNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNV 344

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
             +   +D L KL     A   ++ M+  G  + PN++++N+++  LC  D  +      
Sbjct: 345 VNYGALIDALCKLGRVDDAEVKFNQMINEG--VTPNIVVFNSLVYGLCTVDKWERAEELV 402

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 409
            +M+  G  P+++ +N +   L    RV E  +    M     +P   +    I+    A
Sbjct: 403 YEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLA 462

Query: 410 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTM 469
              + A ++++ ++  G+ P E + N LL G  +  R+ D      EML + +    VT 
Sbjct: 463 GRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTY 522

Query: 470 HKLKKAFYNESR 481
           + +    +   R
Sbjct: 523 NTILHGLFQTKR 534



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 148/352 (42%), Gaps = 50/352 (14%)

Query: 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSR----------ALEFLNR 208
           G+   D+A+  FD + +H     VVA N +L+A+ R    + R           +   NR
Sbjct: 26  GSLGLDDALKLFDELLIHARPASVVAFNQILNAVSRASRASGRRSSSTSESELVVSLFNR 85

Query: 209 VKK----IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           + +     V P+  +++IL+    + G ++ +  TFG ++ +  W    ++  +  L  L
Sbjct: 86  MVRECSIKVAPNTCTYSILIGCLCRMGRLKHSFATFG-LILKTGWRVNDIVINQ-LLKGL 143

Query: 265 IRGKQVDEALK-FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG-IGFNL 322
             GK+V EA+   L+ M    C P    +S  L      N +  A++L  +M    G + 
Sbjct: 144 CDGKRVGEAMDVLLQRMPELGCTPDTVSYSILLKGFCNENRAEEALELLRMMANDHGRSC 203

Query: 323 MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
            PN++ Y  VI  LC     D     F QM+ +G  P++ TYN +    +   +  EV +
Sbjct: 204 PPNVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQ 263

Query: 383 FFHEMIKNEWQP------TPLNCATAIT--------MLLDADEP---------------- 412
              +M     +P      + LN   A++        M+ +   P                
Sbjct: 264 MLEKMSARGLKPDCYTYGSLLNYLCALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCG 323

Query: 413 --EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
             + A++I+N + ++G+ P   +   L+  L  LGR+ D      +M+N  +
Sbjct: 324 MIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGV 375


>gi|449438586|ref|XP_004137069.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Cucumis sativus]
          Length = 505

 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 153/342 (44%), Gaps = 7/342 (2%)

Query: 93  DSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFA 151
           D   + V F R    G   + Y + +M++   K G  +  +   + MK  GVL +L T+ 
Sbjct: 157 DIDQAKVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYN 216

Query: 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK 211
           S+   YC  GK   A   FD +S  GV  + V  N L+  +CR+  Q S+A   L R+K+
Sbjct: 217 SLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRK-GQVSKAEGLLERMKR 275

Query: 212 I-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270
             ++P   +F +L++G    G +++A  ++ E ++     P  V  Y   +    +    
Sbjct: 276 AHINPTTRTFNMLMDGLCNTGQLDKA-LSYLEKLKLIGLCPTLV-TYNILISGFSKVGNS 333

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYN 330
               + +R M+     P+   ++  ++  V+ +D   A +++ +M  IG  L+P+   Y 
Sbjct: 334 SVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIG--LVPDQHTYG 391

Query: 331 AVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 390
            +I  LC   ++    + +  MV     P+ + YN +     K    ++  KF  EM+KN
Sbjct: 392 VLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNSYKALKFLEEMVKN 451

Query: 391 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 432
              P   +  + I +L    +   A  +   + E G+ P E+
Sbjct: 452 GVTPNVASYISTIQILCKDGKSIEAKRLLKEMTEAGLKPPES 493



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 64/380 (16%), Positives = 147/380 (38%), Gaps = 4/380 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           +G   S +++N  +D+L K+G  ++ W             + +F     ++C  G   + 
Sbjct: 67  KGHSPSSFSFNNALDLLAKSGNLDRTWGFFTEYLGRTQFDVYSFGITIKAFCENGNVSKG 126

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
                 M   GV  +V     L+ A CR  +     + F       +  +   + I++ G
Sbjct: 127 FELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMING 186

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
           + K+G  ++  + + +M  +      ++  Y + +    R  ++  A K    +      
Sbjct: 187 FFKKGYKKDGFELYQKM--KLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVA 244

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346
                ++  +  L +    + A  L + M     N  P    +N ++  LCN   +D   
Sbjct: 245 CNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHIN--PTTRTFNMLMDGLCNTGQLDKAL 302

Query: 347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406
            + +++   G  P  +TYN++     K      V +   EM      P+ +     +   
Sbjct: 303 SYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTF 362

Query: 407 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYE 466
           + +D+ E A E+++ +   G++P + +   L+ GL   G + +  +  + M+   +   +
Sbjct: 363 VRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPND 422

Query: 467 VTMHKLKKAFYNESRSMRDI 486
           V  + +   +  E  S + +
Sbjct: 423 VIYNTMINGYCKECNSYKAL 442



 Score = 43.9 bits (102), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 74/196 (37%), Gaps = 5/196 (2%)

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLL 336
           L V+KG +  P+   F+NALD+L K   S +  + W            ++  +   I   
Sbjct: 63  LMVLKGHS--PSSFSFNNALDLLAK---SGNLDRTWGFFTEYLGRTQFDVYSFGITIKAF 117

Query: 337 CNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 396
           C N +V   F    QM   G  P+   Y ++ E   +N  + + +  F  M         
Sbjct: 118 CENGNVSKGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQ 177

Query: 397 LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 456
                 I         +   E++  +   G+LP   + N L+      G+LS   +  +E
Sbjct: 178 YIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDE 237

Query: 457 MLNRRILIYEVTMHKL 472
           +  R +    VT + L
Sbjct: 238 ISKRGVACNAVTYNIL 253


>gi|226493231|ref|NP_001140656.1| hypothetical protein [Zea mays]
 gi|194700420|gb|ACF84294.1| unknown [Zea mays]
 gi|414587025|tpg|DAA37596.1| TPA: hypothetical protein ZEAMMB73_567962 [Zea mays]
          Length = 598

 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 110/485 (22%), Positives = 189/485 (38%), Gaps = 36/485 (7%)

Query: 16  IIPSSSSTTTSPTSHNPHRPTRPRF------PTHLDAPYISSSARIICEILAHASS---- 65
           ++P S S+   P  H+   P R R       P+    P  S+    +     H +     
Sbjct: 15  LLPFSPSSAGRP--HHSRHPARRRLCVRSSRPSPPGIPNTSTRPPPLPPRRLHGADRRLS 72

Query: 66  -----DDIESALACTGIIPTPDLVHEVLQLSYD-----SPSSAVDFFRWAGRGQRLSPYA 115
                 D+++AL   G  P P  V    +L  D      P+ A       G     + Y 
Sbjct: 73  ALIHRGDLDAALRLVGSSPRPPDVPLANRLVRDLCRRGRPADAARVVEACGPEATAATYG 132

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFA--SIFDSYCGAGKYDEAVMSFDVM 173
              +VD   + G  E     V  M    V +   +A   +  + C  G+  +A++  D M
Sbjct: 133 A--LVDGYCRAGLLEDARRVVGGMPAH-VQASSAYAHNPLIHALCERGRVADALVVLDGM 189

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
              G   DVV  N LL A C+      +ALE ++ ++ +  +P+  ++ ++++   +EG+
Sbjct: 190 LCRGCAPDVVTYNILLQAACKGRGY-RQALELIDFMRAEGCEPNNVTYNVIIDAMCREGD 248

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           V++A +    +  R    P  V  Y T L      ++  +A + L  M  ENC P     
Sbjct: 249 VDQARELLNSLPSR-GCKPNTV-NYNTVLKGFCSIERWVDADEILDEMVRENCPPNEATL 306

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  ++ L +           + M   G     N++ YNAVI  +C   +VD+       M
Sbjct: 307 NVIINTLCRKGLLQKVTLYLEKMSKHGCT--ANVVTYNAVISGMCEQGNVDSALELLSNM 364

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
              G  PD +TYN + + L    R  + E+   +M +N+  P      T I+        
Sbjct: 365 QSFGCKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQNDRLPDNSTFNTIISFWCQKGLI 424

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI---LIYEVTM 469
             A E++  + E G  P   + + ++ GL   G++        EM N+      +Y V  
Sbjct: 425 LQAFEVFKQMPEKGCNPNSTTYSTIIGGLTKAGKMEQALELLNEMANKGFNTDKMYRVLT 484

Query: 470 HKLKK 474
             L K
Sbjct: 485 ESLNK 489



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 61/276 (22%), Positives = 117/276 (42%), Gaps = 6/276 (2%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
           N++++ L + G  +++   +  M + G  + + T+ ++    C  G  D A+     M  
Sbjct: 307 NVIINTLCRKGLLQKVTLYLEKMSKHGCTANVVTYNAVISGMCEQGNVDSALELLSNMQS 366

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEE 235
            G + D+V  N++L  +C  +         +   +    PD  +F  ++  W ++G + +
Sbjct: 367 FGCKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQNDRLPDNSTFNTIISFWCQKGLILQ 426

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
           A + F +M E+   NP     Y T +  L +  ++++AL+ L  M  +  F T K +   
Sbjct: 427 AFEVFKQMPEK-GCNPNST-TYSTIIGGLTKAGKMEQALELLNEMANKG-FNTDKMYRVL 483

Query: 296 LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
            + L K +     VQ+   +   G +  P  ++YN V+  LC N   D        MV  
Sbjct: 484 TESLNKEDKIEEVVQVVHKLQDSGIS--PQTVLYNTVLLGLCRNGKTDYAIDVLADMVSC 541

Query: 356 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
           G  PD  TY ++ E L       E  +    +   +
Sbjct: 542 GCMPDESTYIILIEGLFYEGYSKEARELLSRLCSRD 577



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 91/428 (21%), Positives = 171/428 (39%), Gaps = 53/428 (12%)

Query: 109 QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS------LPTFASIFDSYCGAGK 162
           Q  S YA N ++  L + GR   + +A+ V+  DG+L       + T+  +  + C    
Sbjct: 159 QASSAYAHNPLIHALCERGR---VADALVVL--DGMLCRGCAPDVVTYNILLQAACKGRG 213

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFA 221
           Y +A+   D M   G E + V  N ++ A+CR E    +A E LN +  +   P+  ++ 
Sbjct: 214 YRQALELIDFMRAEGCEPNNVTYNVIIDAMCR-EGDVDQARELLNSLPSRGCKPNTVNYN 272

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            +L+G+       +A++   EMV   E  P +       + TL R   + +   +L  M 
Sbjct: 273 TVLKGFCSIERWVDADEILDEMVR--ENCPPNEATLNVIINTLCRKGLLQKVTLYLEKMS 330

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
              C   +  ++  +  + +  +   A++L   M    F   P+++ YN V+  LC+ D 
Sbjct: 331 KHGCTANVVTYNAVISGMCEQGNVDSALELLSNMQS--FGCKPDIVTYNTVLKGLCSADR 388

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
            ++      +M  +   PD+ T+N I     +   + +  + F +M +    P     +T
Sbjct: 389 WEDAEELMIKMSQNDRLPDNSTFNTIISFWCQKGLILQAFEVFKQMPEKGCNPNSTTYST 448

Query: 402 AITMLLDADEPEIAIEIWN----------------------------------YILENGI 427
            I  L  A + E A+E+ N                                   + ++GI
Sbjct: 449 IIGGLTKAGKMEQALELLNEMANKGFNTDKMYRVLTESLNKEDKIEEVVQVVHKLQDSGI 508

Query: 428 LPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE--SRSMRD 485
            P     N +L+GL   G+         +M++   +  E T   L +  + E  S+  R+
Sbjct: 509 SPQTVLYNTVLLGLCRNGKTDYAIDVLADMVSCGCMPDESTYIILIEGLFYEGYSKEARE 568

Query: 486 IFDSLERR 493
           +   L  R
Sbjct: 569 LLSRLCSR 576


>gi|224081016|ref|XP_002306265.1| predicted protein [Populus trichocarpa]
 gi|222855714|gb|EEE93261.1| predicted protein [Populus trichocarpa]
          Length = 548

 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 107/475 (22%), Positives = 192/475 (40%), Gaps = 41/475 (8%)

Query: 38  PRFPTHLDAPYISSSARIICEILAHASS--DDIESALACTGIIPTPDLVHEVL------- 88
           PR  T L     S+ A ++ +IL H  +    +ES+L   GI  TP L+H+ L       
Sbjct: 42  PRNDTLLPTLQPSNDADLLSQILLHHHNPFHAMESSLQLPGISLTPSLLHQTLLRLRHNS 101

Query: 89  --------------QLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWN 134
                           S D+P ++      +      +   +NLM+D+L K  +F+  W 
Sbjct: 102 KIALSLFHHSLSLPPTSTDNPPTSTGTSTTSADSSTATTVTYNLMIDILAKVRQFDVCWQ 161

Query: 135 AVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQ-DVVAVNSLLSAI 192
            +  M +  V  +  TF  +      AG   +A+ +FD M     E  +      LL  +
Sbjct: 162 LIVEMDQRNVKPTSETFFVLIRRLVAAGLTRQAIRAFDDMESFVSEPVNETHFCFLLDTL 221

Query: 193 CRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
           C+        +E  N+ K    P+   + +L+ GW K G ++ A +   E  ER      
Sbjct: 222 CKY-GYVKVGVEIFNKRKHRFSPNVKMYTVLIYGWCKIGRIDMAERFLKETGER--GIEA 278

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMK-GENCF---------PTLKFFSNALDILVKL 302
            V+ Y   L  + R   +    +F R +   EN F         P +  FS  L +  + 
Sbjct: 279 TVVTYNVLLNGICRRASLHPESRFERTITLAENLFDEMRERGIEPDVTSFSIVLHVYSRA 338

Query: 303 NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSL 362
           +     +    +M   G  + P+++ Y +V+  LC+   +++      +MV +G    ++
Sbjct: 339 HKPELTLDKLKLMKEKG--ICPSVVTYTSVVKCLCSCGRIEDAEELLGEMVRNGVSRTAV 396

Query: 363 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI-TMLLDADEPEIAIEIWNY 421
           TYN  F+  +  K      K + +M ++      L+    +  M +  +  +I  EIW  
Sbjct: 397 TYNCFFKEYMGRKDAESALKLYKKMREDGLGSLGLHSYNILLRMFMMLNRLDIVNEIWED 456

Query: 422 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
           +  +G+ P   S   L+ GL    +  +  +F  EM+ + +L  +VT   L K  
Sbjct: 457 LKSSGLGPDLDSYTMLIHGLCEKEKWREACKFFVEMIEKGLLPQKVTFETLYKGL 511



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/271 (22%), Positives = 113/271 (41%), Gaps = 13/271 (4%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ-----ENQTSRALE 204
           +  +   +C  G+ D A          G+E  VV  N LL+ ICR+     E++  R + 
Sbjct: 248 YTVLIYGWCKIGRIDMAERFLKETGERGIEATVVTYNVLLNGICRRASLHPESRFERTIT 307

Query: 205 FLNRV-----KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYET 259
               +     ++ ++PD  SF+I+L  + +    E        M E+    P  V+ Y +
Sbjct: 308 LAENLFDEMRERGIEPDVTSFSIVLHVYSRAHKPELTLDKLKLMKEK-GICPS-VVTYTS 365

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG 319
            +  L    ++++A + L  M       T   ++      +   D+  A++L+  M   G
Sbjct: 366 VVKCLCSCGRIEDAEELLGEMVRNGVSRTAVTYNCFFKEYMGRKDAESALKLYKKMREDG 425

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
              +  L  YN ++ +    + +D V   ++ +   G  PD  +Y M+   L + ++  E
Sbjct: 426 LGSL-GLHSYNILLRMFMMLNRLDIVNEIWEDLKSSGLGPDLDSYTMLIHGLCEKEKWRE 484

Query: 380 VEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
             KFF EMI+    P  +   T    L+ +D
Sbjct: 485 ACKFFVEMIEKGLLPQKVTFETLYKGLIQSD 515



 Score = 47.0 bits (110), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 43/211 (20%), Positives = 80/211 (37%), Gaps = 27/211 (12%)

Query: 304 DSTHAVQLWDIMVGIGF-------------NLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
           + TH   L D +   G+                PN+ MY  +I   C    +D   RF  
Sbjct: 210 NETHFCFLLDTLCKYGYVKVGVEIFNKRKHRFSPNVKMYTVLIYGWCKIGRIDMAERFLK 269

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF----------FHEMIKNEWQPTPLNCA 400
           +    G     +TYN++   + +   +H   +F          F EM +   +P   + +
Sbjct: 270 ETGERGIEATVVTYNVLLNGICRRASLHPESRFERTITLAENLFDEMRERGIEPDVTSFS 329

Query: 401 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
             + +   A +PE+ ++    + E GI P   +   ++  L + GR+ D      EM+  
Sbjct: 330 IVLHVYSRAHKPELTLDKLKLMKEKGICPSVVTYTSVVKCLCSCGRIEDAEELLGEMVRN 389

Query: 461 RILIYEVTMHKLKKAFYNESRSMRDIFDSLE 491
            +    VT +     F+ E    +D   +L+
Sbjct: 390 GVSRTAVTYN----CFFKEYMGRKDAESALK 416


>gi|15222150|ref|NP_172763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75200670|sp|Q9SAD9.1|PPR40_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g13040, mitochondrial; Flags: Precursor
 gi|4850387|gb|AAD31057.1|AC007357_6 F3F19.6 [Arabidopsis thaliana]
 gi|332190841|gb|AEE28962.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 517

 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 131/286 (45%), Gaps = 12/286 (4%)

Query: 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204
           LS   + ++   +C AG+ ++A      MS  G E D+V  N LL+      N   RA  
Sbjct: 218 LSTVVYNALISGFCKAGRIEKAEALKSYMSKIGCEPDLVTYNVLLNYY-YDNNMLKRAEG 276

Query: 205 FLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE---HVLAYETF 260
            +   V+  +  D  S+  LL+   +   V   +K +  MV+  E  P     V++Y T 
Sbjct: 277 VMAEMVRSGIQLDAYSYNQLLK---RHCRVSHPDKCYNFMVKEME--PRGFCDVVSYSTL 331

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF 320
           + T  R     +A +    M+ +     +  +++ +   ++  +S+ A +L D M  +G 
Sbjct: 332 IETFCRASNTRKAYRLFEEMRQKGMVMNVVTYTSLIKAFLREGNSSVAKKLLDQMTELG- 390

Query: 321 NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEV 380
            L P+ I Y  ++  LC + +VD  +  F+ M+ H   PD+++YN +   L ++ RV E 
Sbjct: 391 -LSPDRIFYTTILDHLCKSGNVDKAYGVFNDMIEHEITPDAISYNSLISGLCRSGRVTEA 449

Query: 381 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 426
            K F +M   E  P  L     I  L+   +   A ++W+ +++ G
Sbjct: 450 IKLFEDMKGKECCPDELTFKFIIGGLIRGKKLSAAYKVWDQMMDKG 495



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 87/428 (20%), Positives = 158/428 (36%), Gaps = 70/428 (16%)

Query: 110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVM 168
           R+  + +N  + VL +  RFE        MK  G   +P T++      C   K+D    
Sbjct: 41  RVFSFDYNRFIGVLVRESRFELAEAIYWDMKPMGFSLIPFTYSRFISGLCKVKKFDLIDA 100

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAILLEGW 227
               M   G   D+ A N  L  +CR EN+   A++ F   V++  +PD  S+ IL+ G 
Sbjct: 101 LLSDMETLGFIPDIWAFNVYLDLLCR-ENKVGFAVQTFFCMVQRGREPDVVSYTILINGL 159

Query: 228 EKEGNVEEANKTFGEMVER-------------------------FEWNPEHVLAYETFLI 262
            + G V +A + +  M+                           +E   E + +    L 
Sbjct: 160 FRAGKVTDAVEIWNAMIRSGVSPDNKACAALVVGLCHARKVDLAYEMVAEEIKSARVKLS 219

Query: 263 TLIRGKQVDEALKFLRVMKGE---------NCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
           T++    +    K  R+ K E          C P L  ++  L+     N    A  +  
Sbjct: 220 TVVYNALISGFCKAGRIEKAEALKSYMSKIGCEPDLVTYNVLLNYYYDNNMLKRAEGVMA 279

Query: 314 IMVGIG------------------------FNLM---------PNLIMYNAVIGLLCNND 340
            MV  G                        +N M          +++ Y+ +I   C   
Sbjct: 280 EMVRSGIQLDAYSYNQLLKRHCRVSHPDKCYNFMVKEMEPRGFCDVVSYSTLIETFCRAS 339

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
           +    +R F++M   G   + +TY  + +  ++       +K   +M +    P  +   
Sbjct: 340 NTRKAYRLFEEMRQKGMVMNVVTYTSLIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYT 399

Query: 401 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           T +  L  +   + A  ++N ++E+ I P   S N L+ GL   GR+++  +  E+M  +
Sbjct: 400 TILDHLCKSGNVDKAYGVFNDMIEHEITPDAISYNSLISGLCRSGRVTEAIKLFEDMKGK 459

Query: 461 RILIYEVT 468
                E+T
Sbjct: 460 ECCPDELT 467



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 77/366 (21%), Positives = 156/366 (42%), Gaps = 14/366 (3%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFE---QMWNAVRVMKEDGVL-SLPTFASIFDS 156
           FF    RG+     ++ ++++ L + G+     ++WNA   M   GV       A++   
Sbjct: 137 FFCMVQRGREPDVVSYTILINGLFRAGKVTDAVEIWNA---MIRSGVSPDNKACAALVVG 193

Query: 157 YCGAGKYDEAV-MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VD 214
            C A K D A  M  + +    V+   V  N+L+S  C+   +  +A    + + KI  +
Sbjct: 194 LCHARKVDLAYEMVAEEIKSARVKLSTVVYNALISGFCKA-GRIEKAEALKSYMSKIGCE 252

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           PD  ++ +LL  +     ++ A     EMV           +Y   L    R    D+  
Sbjct: 253 PDLVTYNVLLNYYYDNNMLKRAEGVMAEMVR--SGIQLDAYSYNQLLKRHCRVSHPDKCY 310

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
            F+        F  +  +S  ++   + +++  A +L++ M   G  ++ N++ Y ++I 
Sbjct: 311 NFMVKEMEPRGFCDVVSYSTLIETFCRASNTRKAYRLFEEMRQKG--MVMNVVTYTSLIK 368

Query: 335 LLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
                 +     +  DQM   G  PD + Y  I + L K+  V +    F++MI++E  P
Sbjct: 369 AFLREGNSSVAKKLLDQMTELGLSPDRIFYTTILDHLCKSGNVDKAYGVFNDMIEHEITP 428

Query: 395 TPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 454
             ++  + I+ L  +     AI+++  +      P E +   ++ GL    +LS   +  
Sbjct: 429 DAISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPDELTFKFIIGGLIRGKKLSAAYKVW 488

Query: 455 EEMLNR 460
           ++M+++
Sbjct: 489 DQMMDK 494



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 103/229 (44%), Gaps = 5/229 (2%)

Query: 255 LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF-FSNALDILVKLNDSTHAVQLWD 313
           LAY + +  L++   +D A++    M+  + +    F ++  + +LV+ +    A  ++ 
Sbjct: 10  LAYRSRIANLVKSGMIDNAVQVFDEMR-HSSYRVFSFDYNRFIGVLVRESRFELAEAIYW 68

Query: 314 IMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 373
            M  +GF+L+P    Y+  I  LC     D +      M   G  PD   +N+  + L +
Sbjct: 69  DMKPMGFSLIP--FTYSRFISGLCKVKKFDLIDALLSDMETLGFIPDIWAFNVYLDLLCR 126

Query: 374 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 433
             +V    + F  M++   +P  ++    I  L  A +   A+EIWN ++ +G+ P   +
Sbjct: 127 ENKVGFAVQTFFCMVQRGREPDVVSYTILINGLFRAGKVTDAVEIWNAMIRSGVSPDNKA 186

Query: 434 ANELLVGLRNLGRLS-DVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
              L+VGL +  ++       AEE+ + R+ +  V  + L   F    R
Sbjct: 187 CAALVVGLCHARKVDLAYEMVAEEIKSARVKLSTVVYNALISGFCKAGR 235


>gi|242073534|ref|XP_002446703.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
 gi|241937886|gb|EES11031.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
          Length = 802

 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/315 (21%), Positives = 135/315 (42%), Gaps = 18/315 (5%)

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPD 216
           CG GK+D A     VM   G   D    + +++ +C +  +  +A      +K + V+PD
Sbjct: 264 CGMGKFDMAFQIIKVMMGKGFVPDTSTYSKVITFLC-EAMKVEKAFLLFQEMKSVGVNPD 322

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
             ++ IL++ + K G +E+A   F EM  R      +V+ Y   L   ++ KQ+ +A   
Sbjct: 323 VYTYTILIDSFCKAGLIEQARSWFDEM--RSIGCSANVVTYTALLHAYLKAKQLPQASDI 380

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFN--------------L 322
              M    C P    +S  +D L K  +   A +++  ++G   N              +
Sbjct: 381 FNRMIDAGCPPNTITYSALVDGLCKAGEIQKACEVYTKLIGTSDNVGSDFYFEGKHTDSI 440

Query: 323 MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
            PN++ Y A+I  LC    V +     D M+ +G  P+ + Y+ + +   K  ++   ++
Sbjct: 441 APNVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGKIDNAQE 500

Query: 383 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 442
            F  M K  + PT     + I  +      ++A+++ + ++E+   P   +   ++ GL 
Sbjct: 501 VFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAMIDGLC 560

Query: 443 NLGRLSDVRRFAEEM 457
            +G      +    M
Sbjct: 561 RIGECQKALKLLSMM 575



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/339 (21%), Positives = 143/339 (42%), Gaps = 23/339 (6%)

Query: 127 GRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAV 185
           G+F+  +  ++VM   G V    T++ +    C A K ++A + F  M   GV  DV   
Sbjct: 267 GKFDMAFQIIKVMMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTY 326

Query: 186 NSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244
             L+ + C+      +A  + + ++ I    +  ++  LL  + K   + +A+  F  M+
Sbjct: 327 TILIDSFCKA-GLIEQARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFNRMI 385

Query: 245 ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG----------------ENCFPT 288
           +     P + + Y   +  L +  ++ +A +    + G                ++  P 
Sbjct: 386 D--AGCPPNTITYSALVDGLCKAGEIQKACEVYTKLIGTSDNVGSDFYFEGKHTDSIAPN 443

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
           +  +   +D L K +    A +L D M+  G    PN I+Y+A+I   C    +DN    
Sbjct: 444 VVTYGALIDGLCKAHKVVDAQELLDAMLSNGCE--PNHIIYDALIDGFCKVGKIDNAQEV 501

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
           F +M   G  P   TY  + + + K++R+    K   +M+++   P  +     I  L  
Sbjct: 502 FLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAMIDGLCR 561

Query: 409 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
             E + A+++ + + E G  P   +   L+ GL   G++
Sbjct: 562 IGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKV 600



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/327 (20%), Positives = 141/327 (43%), Gaps = 24/327 (7%)

Query: 149 TFASIFDSYCGAGKYDEAV----------------MSFDVMSMHGVEQDVVAVNSLLSAI 192
           T++++ D  C AG+  +A                   F+      +  +VV   +L+  +
Sbjct: 395 TYSALVDGLCKAGEIQKACEVYTKLIGTSDNVGSDFYFEGKHTDSIAPNVVTYGALIDGL 454

Query: 193 CRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           C+  ++   A E L+  +    +P+   +  L++G+ K G ++ A + F  M  +  + P
Sbjct: 455 CKA-HKVVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGKIDNAQEVFLRM-SKCGYLP 512

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
             V  Y + +  + + +++D A+K L  M   +C P +  ++  +D L ++ +   A++L
Sbjct: 513 T-VHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAMIDGLCRIGECQKALKL 571

Query: 312 WDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECL 371
             +M   G +  PN++ Y A+I  L  +  VD   + F QM   G  P+ +TY ++    
Sbjct: 572 LSMMEEKGCS--PNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCAPNYVTYRVLINHC 629

Query: 372 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 431
                + E      EM +  W P  L    ++     + +   ++ +   +  +G +P+ 
Sbjct: 630 CAAGLLDEAHSLLSEMKQTYW-PKYLQGYCSVVQGF-SKKFIASLGLLEELESHGTVPIA 687

Query: 432 ASANELLVGLRNLGRLSDVRRFAEEML 458
                L+      GRL +     +EM+
Sbjct: 688 PVYGLLIDNFSKAGRLEEALELHKEMM 714



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 76/349 (21%), Positives = 135/349 (38%), Gaps = 18/349 (5%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM--KEDGVLSLPTFASIFDSYCGAGKYDE 165
           G  +  +        L K GR    W+   VM  +ED  L       +      A  +DE
Sbjct: 70  GFCMDKFTVGCFAQALCKEGR----WSDALVMIEREDFKLDTVLCTQMISGLMEASLFDE 125

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILL 224
           A+     M  +    +VV   +LL+   +++ Q       +N  +K+  +P+   F  L+
Sbjct: 126 AISFLHRMRCNSCIPNVVTYRTLLTGFLKKK-QLGWCKRIINMMMKEGCNPNPSLFNSLV 184

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE------ALKFLR 278
             +    +   A K    M +     P   +AY  F+ ++  G+++        A K   
Sbjct: 185 HSYCNARDYPYAYKLLKRMADC--GCPPGYVAYNIFIGSICGGEELPSPDLLALAEKVYE 242

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            M   +C       +N    L  +     A Q+  +M+G GF  +P+   Y+ VI  LC 
Sbjct: 243 EMLASSCVLNKVNTANFARCLCGMGKFDMAFQIIKVMMGKGF--VPDTSTYSKVITFLCE 300

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
              V+  F  F +M   G  PD  TY ++ +   K   + +   +F EM         + 
Sbjct: 301 AMKVEKAFLLFQEMKSVGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSIGCSANVVT 360

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
               +   L A +   A +I+N +++ G  P   + + L+ GL   G +
Sbjct: 361 YTALLHAYLKAKQLPQASDIFNRMIDAGCPPNTITYSALVDGLCKAGEI 409



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/299 (18%), Positives = 126/299 (42%), Gaps = 12/299 (4%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F R +  G   + + +  ++D + K+ R +     +  M E     ++ T+ ++ D  C 
Sbjct: 502 FLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAMIDGLCR 561

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
            G+  +A+    +M   G   +VV   +L+  + +          F+    K   P+  +
Sbjct: 562 IGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCAPNYVT 621

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG--KQVDEALKFL 277
           + +L+      G ++EA+    EM + + W P+++  Y     ++++G  K+   +L  L
Sbjct: 622 YRVLINHCCAAGLLDEAHSLLSEMKQTY-W-PKYLQGY----CSVVQGFSKKFIASLGLL 675

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL-MPNLIMYNAVIGLL 336
             ++     P    +   +D   K      A++L   M+ +  +L + +  MY ++I  L
Sbjct: 676 EELESHGTVPIAPVYGLLIDNFSKAGRLEEALELHKEMMELSSSLNITSKDMYTSLIQAL 735

Query: 337 CNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN--EWQ 393
           C    ++  F  + ++   G  P+   +  + + LIK  + +E  +  + +      WQ
Sbjct: 736 CLASQLEKAFELYSEITRKGVVPELSVFVCLIKGLIKVNKWNEALQLCYSICDEGVNWQ 794



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 70/394 (17%), Positives = 143/394 (36%), Gaps = 55/394 (13%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEA 166
           G R S   +N +V VL   G+ +  +   + M E G  +   T      + C  G++ +A
Sbjct: 35  GYRPSGATYNALVQVLATAGQMDMGFRVQKEMSESGFCMDKFTVGCFAQALCKEGRWSDA 94

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
           ++   ++     + D V    ++S +  + +    A+ FL+R+                 
Sbjct: 95  LV---MIEREDFKLDTVLCTQMISGL-MEASLFDEAISFLHRM----------------- 133

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
                              R      +V+ Y T L   ++ KQ+    + + +M  E C 
Sbjct: 134 -------------------RCNSCIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMKEGCN 174

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN-- 344
           P    F++ +       D  +A +L   M   G    P  + YN  IG +C  +++ +  
Sbjct: 175 PNPSLFNSLVHSYCNARDYPYAYKLLKRMADCGCP--PGYVAYNIFIGSICGGEELPSPD 232

Query: 345 ----VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
                 + +++M+      + +       CL    +     +    M+   + P     +
Sbjct: 233 LLALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDMAFQIIKVMMGKGFVPDTSTYS 292

Query: 401 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM--- 457
             IT L +A + E A  ++  +   G+ P   +   L+      G +   R + +EM   
Sbjct: 293 KVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSI 352

Query: 458 -LNRRILIYEVTMHKLKKAFYNESRSMRDIFDSL 490
             +  ++ Y   +H   KA   +     DIF+ +
Sbjct: 353 GCSANVVTYTALLHAYLKA--KQLPQASDIFNRM 384



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 49/245 (20%), Positives = 94/245 (38%), Gaps = 35/245 (14%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +  M+D L + G  ++    + +M+E G   ++ T+ ++ D    +GK D ++  F  MS
Sbjct: 552 YTAMIDGLCRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMS 611

Query: 175 MHGVEQDVVAVNSLLSAICR-----------QENQTSRALEFLNRVKKIVD--------- 214
             G   + V    L++  C             E + +   ++L     +V          
Sbjct: 612 TKGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYLQGYCSVVQGFSKKFIAS 671

Query: 215 -------------PDGDSFAILLEGWEKEGNVEEANKTFGEMVE-RFEWNPEHVLAYETF 260
                        P    + +L++ + K G +EEA +   EM+E     N      Y + 
Sbjct: 672 LGLLEELESHGTVPIAPVYGLLIDNFSKAGRLEEALELHKEMMELSSSLNITSKDMYTSL 731

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF 320
           +  L    Q+++A +    +  +   P L  F   +  L+K+N    A+QL   +   G 
Sbjct: 732 IQALCLASQLEKAFELYSEITRKGVVPELSVFVCLIKGLIKVNKWNEALQLCYSICDEGV 791

Query: 321 NLMPN 325
           N   N
Sbjct: 792 NWQSN 796


>gi|357502217|ref|XP_003621397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496412|gb|AES77615.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 550

 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 109/487 (22%), Positives = 208/487 (42%), Gaps = 35/487 (7%)

Query: 17  IPSSSSTTTSPTSHNPHRPTRPRFPTHLDAPYISSSARIICEILA-----HASSDDIESA 71
           IP S+    +    + HR  R R PT    P I    +I+  I+      + ++  +   
Sbjct: 30  IPKSNDFDVNNDVSSFHRMLRMR-PT----PSIVEFNKILGSIVKANNNHYTTAISLSHQ 84

Query: 72  LACTGIIPT----PDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNG 127
           L   GI PT      LV+    L   + + ++ F +    G   +   +N +++ +  NG
Sbjct: 85  LELKGITPTIVTFNILVNCYCHLGEMTFAFSI-FAKILKLGYHPTTITFNTLINGICLNG 143

Query: 128 RFEQMWNAVRVMKEDGVLSLP------TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD 181
           + ++  +       D V++L       ++ ++ +  C  G+   A+     +    V  D
Sbjct: 144 KLKEALHF-----HDHVIALGFHLDQVSYRTLINGLCKIGETRAALQMLKKIEGKLVNTD 198

Query: 182 VVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFG 241
           VV  N +++++C+ +  +     +   + K + PD  +F  L+ G+   G ++EA   F 
Sbjct: 199 VVMYNIIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQLKEAFGLFH 258

Query: 242 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
           EMV +   NP+ V  +   +  L +   +  A   L VM  +   P +  +S+ +D    
Sbjct: 259 EMVLK-NINPD-VYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCL 316

Query: 302 LNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS 361
           +N+   A  ++  M  +G  + P+   YN +I  L     VD     F +M   G  PD+
Sbjct: 317 VNEVNKAKHVFSTMSRLG--VAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDT 374

Query: 362 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 421
           +TYN + + L K  R+    +   EM  N      L   + I +L      + AI +   
Sbjct: 375 VTYNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAIALVKK 434

Query: 422 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI----YEVTMHKL-KKAF 476
           I + GI P   + N L+ GL   GRL + +   +++L +   +    Y + ++ L K+  
Sbjct: 435 IKDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMINGLCKEGL 494

Query: 477 YNESRSM 483
           +NE+  +
Sbjct: 495 FNEAEVL 501



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 128/276 (46%), Gaps = 5/276 (1%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y ++++VD L K+G   +  N + VM + GV+  + T++S+ D YC   + ++A   F  
Sbjct: 270 YTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFST 329

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           MS  GV     + N +++ + + +        F     K + PD  ++  L++G  K G 
Sbjct: 330 MSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGR 389

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +  A +   EM       P  +L Y + +  L +   +D+A+  ++ +K +   P++  +
Sbjct: 390 ISYAWQLVDEM--HNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTY 447

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  +D L K     +A  ++  ++  G+++  N   YN +I  LC     +       +M
Sbjct: 448 NILIDGLCKGGRLKNAQDVFQDLLIKGYSV--NAWTYNIMINGLCKEGLFNEAEVLLSKM 505

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
             +G  PD++TY  I   L +     + EK   EMI
Sbjct: 506 ENNGIIPDAVTYETIIRALFRKDENEKAEKLLREMI 541



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 125/313 (39%), Gaps = 35/313 (11%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF S+   +C  G+  EA   F  M +  +  DV   + L+ A+C+  N T         
Sbjct: 236 TFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVDALCKDGNITRAKNMLAVM 295

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           +K+ V PD  +++ L++G+     V +A   F  M  R    P H  +Y   +  L + K
Sbjct: 296 MKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTM-SRLGVAP-HAHSYNIMINGLGKIK 353

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF-------- 320
            VDEAL   + M  +   P    +++ +D L KL   ++A QL D M   G         
Sbjct: 354 MVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYN 413

Query: 321 -------------------------NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
                                     + P++  YN +I  LC    + N    F  ++  
Sbjct: 414 SLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIK 473

Query: 356 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 415
           G   ++ TYN++   L K    +E E    +M  N   P  +   T I  L   DE E A
Sbjct: 474 GYSVNAWTYNIMINGLCKEGLFNEAEVLLSKMENNGIIPDAVTYETIIRALFRKDENEKA 533

Query: 416 IEIWNYILENGIL 428
            ++   ++  G+L
Sbjct: 534 EKLLREMIIRGLL 546


>gi|297727717|ref|NP_001176222.1| Os10g0495400 [Oryza sativa Japonica Group]
 gi|255679525|dbj|BAH94950.1| Os10g0495400, partial [Oryza sativa Japonica Group]
          Length = 438

 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 141/315 (44%), Gaps = 15/315 (4%)

Query: 90  LSYDSPSSAVDFFRWAGRG--QRLSP--YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGV 144
           ++ DSP++AV  F    R     ++P    +++++    + GR +  + A+  V+K+   
Sbjct: 68  VARDSPAAAVSLFNRMARAGADEVTPDLCTYSILIGCCCRAGRLDLGFAALGNVIKKGFR 127

Query: 145 LSLPTFASIFDSYCGAGKYDEAV-MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRAL 203
           +   TFA +    C   +  +A+ +    M+      DV +   LL  +C  EN++  AL
Sbjct: 128 VEAITFAPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLC-DENRSQEAL 186

Query: 204 EFLNRVK----KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYET 259
           E L+ +         PD  S+  ++ G+ KEG+ ++A  T+ EM++R   +P +V+ Y +
Sbjct: 187 ELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDR-RISP-NVVTYSS 244

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG 319
            +  L + + +D+A++ L  M      P    +++ L           A+     M   G
Sbjct: 245 IIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDG 304

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
               PN++ Y +++  LC N       + FD M   G  PD  TY  + +       + E
Sbjct: 305 VE--PNVVTYRSLMNYLCKNGRCTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVE 362

Query: 380 VEKFFHEMIKNEWQP 394
           +      M++N  QP
Sbjct: 363 MHALLDLMVRNGIQP 377



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 95/196 (48%), Gaps = 5/196 (2%)

Query: 109 QRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +R+SP    ++ ++  L K    ++    +  M ++GV+    T+ SI   YC +G+  E
Sbjct: 233 RRISPNVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKE 292

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A+ +   M   GVE +VV   SL++ +C+    T     F +  K+ ++PD  ++  LL+
Sbjct: 293 AIGTLKKMRSDGVEPNVVTYRSLMNYLCKNGRCTEARKIFDSMTKRGLEPDIATYRTLLQ 352

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+  +G + E +     MV R    P+H + +   +    + ++VD+A+     M+    
Sbjct: 353 GYATKGALVEMHALLDLMV-RNGIQPDHHV-FNILICAYAKQEKVDQAMLVFSKMRQHGL 410

Query: 286 FPTLKFFSNALDILVK 301
            P +  +   +D+L K
Sbjct: 411 NPNVVCYGTVIDVLCK 426



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/303 (21%), Positives = 122/303 (40%), Gaps = 9/303 (2%)

Query: 166 AVMSFDVMSMHGVEQ---DVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
           AV  F+ M+  G ++   D+   + L+   CR            N +KK    +  +FA 
Sbjct: 76  AVSLFNRMARAGADEVTPDLCTYSILIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFAP 135

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM-- 280
           LL+G   +    +A       +      P+ V +    L  L    +  EAL+ L +M  
Sbjct: 136 LLKGLCADKRTSDAMDIVLRRMTELSCMPD-VFSCTILLKGLCDENRSQEALELLHMMAD 194

Query: 281 -KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
            +G    P +  ++  ++   K  DS  A   +  M  +   + PN++ Y+++I  LC  
Sbjct: 195 DRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEM--LDRRISPNVVTYSSIIAALCKA 252

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
             +D      + MV +G  PD +TYN I      + +  E      +M  +  +P  +  
Sbjct: 253 QAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTY 312

Query: 400 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
            + +  L        A +I++ + + G+ P  A+   LL G    G L ++    + M+ 
Sbjct: 313 RSLMNYLCKNGRCTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVR 372

Query: 460 RRI 462
             I
Sbjct: 373 NGI 375


>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
 gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 1164

 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 160/368 (43%), Gaps = 15/368 (4%)

Query: 115  AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            ++N+++  + + GR  +  + + +M+  G    + +++++ + YC  G+ D+     + M
Sbjct: 671  SYNIVIHFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVINGYCRFGELDKVWKLIEKM 730

Query: 174  SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
               G++ +     S++  +CR          F   + + + PD   +  L++G+ K G++
Sbjct: 731  KQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGFCKRGDI 790

Query: 234  EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
              A+K F EM  R +  P+ VL Y   +    +   + EA K    M      P +  F+
Sbjct: 791  RAASKFFYEMHSR-DITPD-VLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFT 848

Query: 294  NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
              ++   K      A ++ + M+  G +  PN++ Y  +I  LC   D+D+      +M 
Sbjct: 849  ELMNGYCKAGHIKDAFRVHNHMIQAGCS--PNVVTYTTLIDGLCKEGDLDSANELLHEMW 906

Query: 354  FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI-TMLLDA--- 409
              G  P+  TYN I   L K+  + E  K        E++   LN  T   T L+DA   
Sbjct: 907  KIGLQPNIFTYNSIVNGLCKSGNIEEAVKLV-----GEFEAAGLNADTVTYTTLMDAYCK 961

Query: 410  -DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 468
              E + A EI   +L  G+ P   + N L+ G    G L D  +    ML + I     T
Sbjct: 962  SGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATT 1021

Query: 469  MHKLKKAF 476
             + L K +
Sbjct: 1022 FNCLVKQY 1029



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 81/418 (19%), Positives = 168/418 (40%), Gaps = 46/418 (11%)

Query: 115  AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +++ +++   + G  +++W  +  MK+ G+  +  T+ SI    C   K  EA  +F  M
Sbjct: 706  SYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEM 765

Query: 174  SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
               G+  D +   +L+   C++ +  + +  F     + + PD  ++  ++ G+ + G++
Sbjct: 766  IGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDM 825

Query: 234  EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
             EA K F EM+ R    P+ ++ +   +    +   + +A +    M    C P +  ++
Sbjct: 826  VEAGKLFHEMLCR-GLEPD-IITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYT 883

Query: 294  NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF----- 348
              +D L K  D   A +L   M  IG  L PN+  YN+++  LC + +++   +      
Sbjct: 884  TLIDGLCKEGDLDSANELLHEMWKIG--LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFE 941

Query: 349  ------------------------------FDQMVFHGAFPDSLTYNMIFECLIKNKRVH 378
                                            +M+  G  P  +T+N++      +  + 
Sbjct: 942  AAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLE 1001

Query: 379  EVEKFFHEMIKNEWQP--TPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 436
            + EK  + M+     P  T  NC   +      +  + A  I+  +   G+ P   +   
Sbjct: 1002 DGEKLLNWMLAKGIAPNATTFNC--LVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYEN 1059

Query: 437  LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLER 492
            L+ G  N   + +     +EM  +   +   T   L K F+   +    R+IFD + R
Sbjct: 1060 LVKGHCNARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFFKRKKFVEAREIFDQMRR 1117



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 138/320 (43%), Gaps = 9/320 (2%)

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDS 219
           G   EA   F+ M  +G+   V + N  L+ + +  N+T+ A+       ++ V  +  S
Sbjct: 612 GMLPEARKVFEKMLNYGLVLSVDSCNVYLARLSKDCNKTATAIIVFREFPEVGVCWNVAS 671

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           + I++    + G + EA+     ++E   + P+ V++Y T +    R  ++D+  K +  
Sbjct: 672 YNIVIHFVCQLGRINEAHHLL-LLMELKGYTPD-VISYSTVINGYCRFGELDKVWKLIEK 729

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
           MK +   P    + + + +L ++     A + +  M+G G  ++P+ I+Y  ++   C  
Sbjct: 730 MKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQG--ILPDTIVYTTLVDGFCKR 787

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
            D+    +FF +M      PD LTY  I     +   + E  K FHEM+    +P  +  
Sbjct: 788 GDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITF 847

Query: 400 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM-- 457
              +     A   + A  + N++++ G  P   +   L+ GL   G L        EM  
Sbjct: 848 TELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWK 907

Query: 458 --LNRRILIYEVTMHKLKKA 475
             L   I  Y   ++ L K+
Sbjct: 908 IGLQPNIFTYNSIVNGLCKS 927



 Score = 43.1 bits (100), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 75/172 (43%), Gaps = 36/172 (20%)

Query: 108  GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEA 166
            G + + + +N +V+ L K+G  E+    V   +  G+     T+ ++ D+YC +G+ D+A
Sbjct: 909  GLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKA 968

Query: 167  ---------------VMSFDVM----SMHGVEQD----------------VVAVNSLLSA 191
                           +++F+V+     +HG+ +D                    N L+  
Sbjct: 969  QEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQ 1028

Query: 192  ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
             C + N  +    + +   + V+PDG ++  L++G     N++EA   F EM
Sbjct: 1029 YCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWFLFQEM 1080


>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Cucumis sativus]
          Length = 645

 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 89/391 (22%), Positives = 164/391 (41%), Gaps = 44/391 (11%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G  L+  A N+++ VL K GRFE +W     M  +G+  S+ TF ++ D  C  G    A
Sbjct: 142 GAALTIQACNVLLYVLVKTGRFELLWRIYEEMISNGLSPSVITFGTLIDGCCRQGDLLRA 201

Query: 167 VMSFDVM-----------------------------SMH------GVEQDVVAVNSLLSA 191
              FD M                             SMH      GV  +V   N+L+  
Sbjct: 202 QEMFDEMRVKGIVPTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDG 261

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
            C+  N       + + + + + PD  +F IL++G  K G ++ A   F  M+ +F   P
Sbjct: 262 YCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMI-KFSVTP 320

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
            ++  Y + +    +   V EA+     ++     P +  +S  +  L  ++ +  A  +
Sbjct: 321 -NIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNI 379

Query: 312 WDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECL 371
           ++ M   G  ++ N + YN++I   C    +D       QM  +G  P+ +T++ + +  
Sbjct: 380 FEKMTKEG--ILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGY 437

Query: 372 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 431
            K + +      + EM+     P  +     I         + A+++++ +L+NGI P  
Sbjct: 438 CKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNC 497

Query: 432 ASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
            + + LL GL   G++SD    A E+   +I
Sbjct: 498 YTISCLLDGLCKDGKISD----ALELFTEKI 524



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 109/241 (45%), Gaps = 15/241 (6%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T++ +    C   + +EA   F+ M+  G+  + V  NSL+   C+ E +  +ALE  ++
Sbjct: 359 TYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCK-EGKMDKALEICSQ 417

Query: 209 V-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           + +  V+P+  +F+ L++G+ K  N++ A   + EMV +   +P+ V+ Y   +    + 
Sbjct: 418 MTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIK-SLSPD-VVTYTAMIDGHCKY 475

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW-----------DIMV 316
             + EALK    M      P     S  LD L K    + A++L+           ++  
Sbjct: 476 GSMKEALKLYSDMLDNGITPNCYTISCLLDGLCKDGKISDALELFTEKIEFQTPRCNVDA 535

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
           G     + N + Y A+I  LC +       + F  M  +G  PD + Y ++   L + K 
Sbjct: 536 GGSKPSLTNHVAYTALIHGLCQDGQFSKAVKLFSDMRRYGLQPDEVIYVVMLRGLFQVKY 595

Query: 377 V 377
           +
Sbjct: 596 I 596



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/146 (21%), Positives = 67/146 (45%), Gaps = 1/146 (0%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F +    G   +   +N ++D   K G+ ++       M E+GV  ++ TF+++ D YC 
Sbjct: 380 FEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCK 439

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
                 A+  +  M +  +  DVV   +++   C+  +       + + +   + P+  +
Sbjct: 440 IRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYT 499

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVE 245
            + LL+G  K+G + +A + F E +E
Sbjct: 500 ISCLLDGLCKDGKISDALELFTEKIE 525


>gi|115466100|ref|NP_001056649.1| Os06g0125300 [Oryza sativa Japonica Group]
 gi|6983867|dbj|BAA90802.1| salt-inducible protein-like [Oryza sativa Japonica Group]
 gi|113594689|dbj|BAF18563.1| Os06g0125300 [Oryza sativa Japonica Group]
 gi|125553869|gb|EAY99474.1| hypothetical protein OsI_21443 [Oryza sativa Indica Group]
 gi|125595884|gb|EAZ35664.1| hypothetical protein OsJ_19951 [Oryza sativa Japonica Group]
          Length = 535

 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 117/277 (42%), Gaps = 34/277 (12%)

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI 212
           +     G G  D A+   D M   G+  DVV   ++LSA C + +       F + +   
Sbjct: 199 LLKGLVGIGDLDAALKVLDEMPGLGITPDVVTYTTVLSAYCGKGDIEGAQKLFDDIIASG 258

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
             PD   + +L++G+ + GN+++A +   EM E     P  V  Y   +    + ++  E
Sbjct: 259 RRPDVTMYTVLIDGYCQCGNLQDAARIMDEM-EAARVQPNEV-TYSVVIEACCKEEKPIE 316

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW-------------------- 312
           A  F+R M G    P     +  +D+L +   S  A QLW                    
Sbjct: 317 ARDFMREMLGAGYVPDTALGAKVVDVLCQDGKSEEAYQLWRWMEKKNVPPDNMVTSTLIY 376

Query: 313 ----DIMVGIGFNLM--------PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPD 360
               + MV    NL         P+L+ YN++I  LC N+++    R +D MV  G  P+
Sbjct: 377 WLCKNGMVREARNLFDELERGFKPSLLTYNSLISGLCENEELQEAGRVWDDMVERGYEPN 436

Query: 361 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
           ++TY  + + L K  + +E    F EM+    +P+ L
Sbjct: 437 AMTYEALIKGLCKTGKPNEGATVFEEMVSRGCKPSSL 473



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 85/198 (42%), Gaps = 2/198 (1%)

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG 319
            L  L+    +D ALK L  M G    P +  ++  L       D   A +L+D ++  G
Sbjct: 199 LLKGLVGIGDLDAALKVLDEMPGLGITPDVVTYTTVLSAYCGKGDIEGAQKLFDDIIASG 258

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
               P++ MY  +I   C   ++ +  R  D+M      P+ +TY+++ E   K ++  E
Sbjct: 259 RR--PDVTMYTVLIDGYCQCGNLQDAARIMDEMEAARVQPNEVTYSVVIEACCKEEKPIE 316

Query: 380 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 439
              F  EM+   + P     A  + +L    + E A ++W ++ +  + P     + L+ 
Sbjct: 317 ARDFMREMLGAGYVPDTALGAKVVDVLCQDGKSEEAYQLWRWMEKKNVPPDNMVTSTLIY 376

Query: 440 GLRNLGRLSDVRRFAEEM 457
            L   G + + R   +E+
Sbjct: 377 WLCKNGMVREARNLFDEL 394



 Score = 42.4 bits (98), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 35/162 (21%), Positives = 58/162 (35%), Gaps = 35/162 (21%)

Query: 322 LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 381
           + PNL+  N ++  L    D+D   +  D+M   G  PD +TY  +         +   +
Sbjct: 189 ITPNLVSCNILLKGLVGIGDLDAALKVLDEMPGLGITPDVVTYTTVLSAYCGKGDIEGAQ 248

Query: 382 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 441
           K F ++I +  +P      T  T+L+D                               G 
Sbjct: 249 KLFDDIIASGRRPD----VTMYTVLID-------------------------------GY 273

Query: 442 RNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSM 483
              G L D  R  +EM   R+   EVT   + +A   E + +
Sbjct: 274 CQCGNLQDAARIMDEMEAARVQPNEVTYSVVIEACCKEEKPI 315


>gi|224069254|ref|XP_002302938.1| predicted protein [Populus trichocarpa]
 gi|222844664|gb|EEE82211.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 95/396 (23%), Positives = 173/396 (43%), Gaps = 9/396 (2%)

Query: 83  LVHEVLQLSYDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE 141
           L+  ++++S  SP  A++F+      G   + Y +N++++ L K G+ +        +++
Sbjct: 203 LLERMIKMS--SPMVALEFYLEILDSGYPPNVYTFNVLMNRLCKEGKVKDAQLIFDEIRK 260

Query: 142 DGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS 200
            G+  +  +F ++ + YC +G  +E      VM    V  DV   ++L+  +C++     
Sbjct: 261 TGLQPTAVSFNTLINGYCKSGNLEEGFRLKMVMEEFRVFPDVFTYSALIDGLCKECQLED 320

Query: 201 RALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF 260
               F     + + P+  +F  L+ G  K G V+ A + + +M  +     + VL Y T 
Sbjct: 321 ANHLFKEMCDRGLVPNDVTFTTLINGQCKNGRVDLALEIYQQMFTK-GLKADLVL-YNTL 378

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF 320
           +  L +G    EA KF+  M      P    ++  LD   K  D   A+++   MV  G 
Sbjct: 379 IDGLCKGGYFREARKFVGEMTKRGLIPDKFTYTTLLDGSCKEGDLELALEMRKEMVKEGI 438

Query: 321 NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEV 380
            L  + + + A+I  LC +  + +  R   +M+  G  PD  TY M+ +   K   V   
Sbjct: 439 QL--DNVAFTAIISGLCRDGKIVDAERTLREMLRAGLKPDDGTYTMVMDGFCKKGDVKMG 496

Query: 381 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 440
            K   EM  +   P  +     +  L    + + A  + N +L  G++P + + N LL G
Sbjct: 497 FKLLKEMQSDGHIPGVITYNVLMNGLCKQGQVKNADMLLNAMLNLGVVPDDITYNILLQG 556

Query: 441 LRNLGRLSDVRRFAEEM-LNRRILIYEVTMHKLKKA 475
               G+L D +    EM L      Y   +H+L KA
Sbjct: 557 HCKHGKLGDFQNVKTEMGLVSDYASYRSLLHELSKA 592



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 146/353 (41%), Gaps = 7/353 (1%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEA 166
             R++  A +L+  V+ + G+         +++  G LS    F ++   Y   G   +A
Sbjct: 122 AHRMNQQAESLLHFVVSRKGKGSASSVFASILETKGTLSSSFVFDALMSVYTEFGYVSDA 181

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF-LNRVKKIVDPDGDSFAILLE 225
           +  F +   H ++        LL  + +  +    ALEF L  +     P+  +F +L+ 
Sbjct: 182 IQCFRLTKKHNLKIPFNGCKCLLERMIKMSSPMV-ALEFYLEILDSGYPPNVYTFNVLMN 240

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
              KEG V++A   F E + +    P  V ++ T +    +   ++E  +   VM+    
Sbjct: 241 RLCKEGKVKDAQLIFDE-IRKTGLQPTAV-SFNTLINGYCKSGNLEEGFRLKMVMEEFRV 298

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
           FP +  +S  +D L K      A  L+  M   G  L+PN + +  +I   C N  VD  
Sbjct: 299 FPDVFTYSALIDGLCKECQLEDANHLFKEMCDRG--LVPNDVTFTTLINGQCKNGRVDLA 356

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
              + QM   G   D + YN + + L K     E  KF  EM K    P      T +  
Sbjct: 357 LEIYQQMFTKGLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKFTYTTLLDG 416

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
                + E+A+E+   +++ GI     +   ++ GL   G++ D  R   EML
Sbjct: 417 SCKEGDLELALEMRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAERTLREML 469



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 72/332 (21%), Positives = 129/332 (38%), Gaps = 35/332 (10%)

Query: 142 DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSR 201
           D + S PTF+    SYC    +         +  H + Q      SLL  +  ++ + S 
Sbjct: 98  DFLSSYPTFSHTVQSYCSMVHF---------LIAHRMNQQA---ESLLHFVVSRKGKGSA 145

Query: 202 ALEFLNRVKKIVDPDGD-----SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL- 255
           +  F +    I++  G       F  L+  + + G V +A       ++ F    +H L 
Sbjct: 146 SSVFAS----ILETKGTLSSSFVFDALMSVYTEFGYVSDA-------IQCFRLTKKHNLK 194

Query: 256 ----AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
                 +  L  +I+      AL+F   +      P +  F+  ++ L K      A  +
Sbjct: 195 IPFNGCKCLLERMIKMSSPMVALEFYLEILDSGYPPNVYTFNVLMNRLCKEGKVKDAQLI 254

Query: 312 WDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECL 371
           +D +   G  L P  + +N +I   C + +++  FR    M     FPD  TY+ + + L
Sbjct: 255 FDEIRKTG--LQPTAVSFNTLINGYCKSGNLEEGFRLKMVMEEFRVFPDVFTYSALIDGL 312

Query: 372 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 431
            K  ++ +    F EM      P  +   T I         ++A+EI+  +   G+    
Sbjct: 313 CKECQLEDANHLFKEMCDRGLVPNDVTFTTLINGQCKNGRVDLALEIYQQMFTKGLKADL 372

Query: 432 ASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
              N L+ GL   G   + R+F  EM  R ++
Sbjct: 373 VLYNTLIDGLCKGGYFREARKFVGEMTKRGLI 404


>gi|449530582|ref|XP_004172273.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Cucumis sativus]
          Length = 505

 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 153/342 (44%), Gaps = 7/342 (2%)

Query: 93  DSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFA 151
           D   + V F R    G   + Y + +M++   K G  +  +   + MK  GVL +L T+ 
Sbjct: 157 DIDQAKVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYN 216

Query: 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK 211
           S+   YC  GK   A   FD +S  GV  + V  N L+  +CR+  Q S+A   L R+K+
Sbjct: 217 SLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRK-GQVSKAEGLLERMKR 275

Query: 212 I-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270
             ++P   +F +L++G    G +++A  ++ E ++     P  V  Y   +    +    
Sbjct: 276 AHINPTTRTFNMLMDGLCNTGQLDKA-LSYLEKLKLIGLCPTLV-TYNILISGFSKVGNS 333

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYN 330
               + +R M+     P+   ++  ++  V+ +D   A +++ +M  IG  L+P+   Y 
Sbjct: 334 SVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIG--LVPDQHTYG 391

Query: 331 AVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 390
            +I  LC   ++    + +  MV     P+ + YN +     K    ++  KF  EM+KN
Sbjct: 392 VLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNSYKALKFLEEMVKN 451

Query: 391 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 432
              P   +  + I +L    +   A  +   + E G+ P E+
Sbjct: 452 GVTPNVASYISTIQILCKDGKSIEAKRLLKEMTEAGLKPPES 493



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/380 (16%), Positives = 147/380 (38%), Gaps = 4/380 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           +G   S +++N  +D+L K+G  ++ W             + +F     ++C  G   + 
Sbjct: 67  KGHSPSSFSFNNALDLLAKSGNLDRTWGFFTEYLGRTQFDVYSFWITIKAFCENGNVSKG 126

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
                 M   GV  +V     L+ A CR  +     + F       +  +   + I++ G
Sbjct: 127 FELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMING 186

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
           + K+G  ++  + + +M  +      ++  Y + +    R  ++  A K    +      
Sbjct: 187 FFKKGYKKDGFELYQKM--KLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVA 244

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346
                ++  +  L +    + A  L + M     N  P    +N ++  LCN   +D   
Sbjct: 245 CNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHIN--PTTRTFNMLMDGLCNTGQLDKAL 302

Query: 347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406
            + +++   G  P  +TYN++     K      V +   EM      P+ +     +   
Sbjct: 303 SYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTF 362

Query: 407 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYE 466
           + +D+ E A E+++ +   G++P + +   L+ GL   G + +  +  + M+   +   +
Sbjct: 363 VRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPND 422

Query: 467 VTMHKLKKAFYNESRSMRDI 486
           V  + +   +  E  S + +
Sbjct: 423 VIYNTMINGYCKECNSYKAL 442



 Score = 42.0 bits (97), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 74/196 (37%), Gaps = 5/196 (2%)

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLL 336
           L V+KG +  P+   F+NALD+L K   S +  + W            ++  +   I   
Sbjct: 63  LMVLKGHS--PSSFSFNNALDLLAK---SGNLDRTWGFFTEYLGRTQFDVYSFWITIKAF 117

Query: 337 CNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 396
           C N +V   F    QM   G  P+   Y ++ E   +N  + + +  F  M         
Sbjct: 118 CENGNVSKGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQ 177

Query: 397 LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 456
                 I         +   E++  +   G+LP   + N L+      G+LS   +  +E
Sbjct: 178 YIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDE 237

Query: 457 MLNRRILIYEVTMHKL 472
           +  R +    VT + L
Sbjct: 238 ISKRGVACNAVTYNIL 253


>gi|225437600|ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic [Vitis vinifera]
          Length = 867

 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 112/476 (23%), Positives = 200/476 (42%), Gaps = 22/476 (4%)

Query: 17  IPSSSSTTTSPTSHNPHRPTRPRFPTHLDAPYISSSARIIC---EILAHA---SSDD--I 68
           +P S S  T+  S    R TR     H   P  +++AR      E L HA   +SDD  I
Sbjct: 77  LPPSKSELTADFS--GRRSTRFVSKMHFGRPKTAAAARHTSTAEEALRHAIRFASDDKGI 134

Query: 69  ESALAC--TGIIPTPDLVHEVLQLSYDSP-SSAVDFFRWAGRGQRLSPYAWNL---MVDV 122
           +S L    + +  + D    + +L      + A+  F +A R ++       L   M+ +
Sbjct: 135 DSVLLNFESRLCGSDDYTFLLRELGNRGEWAKAIRCFEFAVRREQRRNEQGKLASAMISI 194

Query: 123 LGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD 181
           LG+ G+ E   N       +G   ++  F+++  +Y  +G  DEA+  F+ M   G++ +
Sbjct: 195 LGRLGQVELAKNVFETALNEGYGNTVYAFSALISAYGRSGYCDEAIKVFETMKSSGLKPN 254

Query: 182 VVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTF 240
           +V  N+++ A  +     +RA E  +  ++  V PD  +F  LL    + G  E A   F
Sbjct: 255 LVTYNAVIDACGKGGVDFNRAAEIFDEMLRNGVQPDRITFNSLLAVCGRGGLWEAARNLF 314

Query: 241 GEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV 300
            EM+ R     + +  Y T L  + +G Q+D A + +  M  ++  P +  +S  +D   
Sbjct: 315 SEMLYR--GIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYA 372

Query: 301 KLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPD 360
           K      A+ L++ M      L  + + YN ++ +       +       +M   G   D
Sbjct: 373 KAGRLDEALNLFNEMKFASIGL--DRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKD 430

Query: 361 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 420
           ++TYN +     K  +  EV++ F EM      P  L  +T I +       + A+E++ 
Sbjct: 431 AVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFR 490

Query: 421 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
              + G+       + L+  L   G +     F +EM    I    VT + +  AF
Sbjct: 491 EFKKAGLKADVVLYSALIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAF 546



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 119/294 (40%), Gaps = 7/294 (2%)

Query: 201 RALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF 260
           R  EF  R ++  +  G   + ++    + G VE A   F   +     N   V A+   
Sbjct: 169 RCFEFAVRREQRRNEQGKLASAMISILGRLGQVELAKNVFETALNEGYGNT--VYAFSAL 226

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN-DSTHAVQLWDIMVGIG 319
           +    R    DEA+K    MK     P L  ++  +D   K   D   A +++D M+  G
Sbjct: 227 ISAYGRSGYCDEAIKVFETMKSSGLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMLRNG 286

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
             + P+ I +N+++ +       +     F +M++ G   D  TYN + + + K  ++  
Sbjct: 287 --VQPDRITFNSLLAVCGRGGLWEAARNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDL 344

Query: 380 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 439
             +   EM +    P  +  +T I     A   + A+ ++N +    I     S N LL 
Sbjct: 345 AFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLS 404

Query: 440 GLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLE 491
               LGR  +     +EM +  I    VT + L   +  + +   ++ +F+ ++
Sbjct: 405 IYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMK 458



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 68/129 (52%), Gaps = 3/129 (2%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G +     +N ++   GK G++E++      MK + +  +L T++++ D Y   G Y EA
Sbjct: 426 GIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEA 485

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLE 225
           +  F      G++ DVV  ++L+ A+C+       A+ FL+ + K+ + P+  ++  +++
Sbjct: 486 MEVFREFKKAGLKADVVLYSALIDALCKN-GLVESAVSFLDEMTKEGIRPNVVTYNSIID 544

Query: 226 GWEKEGNVE 234
            + + G+ E
Sbjct: 545 AFGRSGSAE 553


>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
          Length = 948

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 145/355 (40%), Gaps = 8/355 (2%)

Query: 110 RLSPYAWNLMVDVLGKNGRFEQ-MWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVM 168
           + +P  + +++    + G  E+ +W      K D + ++     + D     G++D    
Sbjct: 123 KFTPNVFGVLIIAFSEMGLVEEALW---VYYKMDVLPAMQACNMVLDGLVKKGRFDTMWK 179

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
            +  M   G   +VV   +L+   CRQ +       F   ++K + P    + IL+ G  
Sbjct: 180 VYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLC 239

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
            E  + EA   F  M  R      ++  Y T +    +   V +AL+  + M G+   P 
Sbjct: 240 GESRISEAESMFRTM--RNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPN 297

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
           +  F   +D L K ++   A +    M    F ++PN+ +YN +I   C   ++      
Sbjct: 298 VVTFGILIDGLCKTDEMVSARKFLIDMAS--FGVVPNIFVYNCLIDGYCKAGNLSEALSL 355

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
             ++  H   PD  TY+++ + L    R+ E +    EM K  + P  +   T I     
Sbjct: 356 HSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCK 415

Query: 409 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
               E AIE+ + + E GI P   + + L+ G    G++        EM+ + +L
Sbjct: 416 EGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLL 470



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/344 (21%), Positives = 152/344 (44%), Gaps = 5/344 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           A N+++D L K GRF+ MW     M   G   ++ T+ ++ D  C  G + +A   FD M
Sbjct: 160 ACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEM 219

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
               +   VV    L+  +C +   +     F       + P+  ++  +++G+ K  +V
Sbjct: 220 IEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHV 279

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           ++A + + EM+   +    +V+ +   +  L +  ++  A KFL  M      P +  ++
Sbjct: 280 KKALELYQEMLG--DGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYN 337

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +D   K  + + A+ L   +      ++P++  Y+ +I  LC  D ++       +M 
Sbjct: 338 CLIDGYCKAGNLSEALSLHSEIEK--HEILPDVFTYSILIKGLCGVDRMEEADGLLQEMK 395

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G  P+++TYN + +   K   + +  +   +M +   +P  +  +T I     A + E
Sbjct: 396 KKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKME 455

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
            A+ ++  ++  G+LP   +   L+ G    G   +  R  +EM
Sbjct: 456 AAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEM 499



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 139/317 (43%), Gaps = 22/317 (6%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N M+D   K    ++     + M  DG+L ++ TF  + D  C   K DE V +   
Sbjct: 264 YTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLC---KTDEMVSARKF 320

Query: 173 ---MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWE 228
              M+  GV  ++   N L+   C+  N  S AL   + ++K  + PD  +++IL++G  
Sbjct: 321 LIDMASFGVVPNIFVYNCLIDGYCKAGN-LSEALSLHSEIEKHEILPDVFTYSILIKGLC 379

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
               +EEA+    EM ++  + P  V  Y T +    +   +++A++    M  +   P 
Sbjct: 380 GVDRMEEADGLLQEMKKK-GFLPNAV-TYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPN 437

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
           +  FS  +D   K      A+ L+  MV  G  L+P+++ Y A+I     + +    FR 
Sbjct: 438 IITFSTLIDGYCKAGKMEAAMGLYTEMVIKG--LLPDVVAYTALIDGHFKDGNTKEAFRL 495

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN---------C 399
             +M   G  P+  T + + + L K+ R+ +  K F      +   +  N         C
Sbjct: 496 HKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLYQMC 555

Query: 400 ATAITMLLDADEPEIAI 416
           + A+++     EP I +
Sbjct: 556 SLALSLFRGISEPCICV 572



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 77/378 (20%), Positives = 154/378 (40%), Gaps = 47/378 (12%)

Query: 108 GQRLSPYAWNLMVDVLG--KNGRFEQMWNAV-RVMK--EDGVLSLPTFASIFDSYCGAGK 162
           G +L   A  LM D++   +N R  ++  +V  V+   E    +   F  +  ++   G 
Sbjct: 82  GAKLYAKARCLMRDLIQCLQNSRRSRICCSVFNVLSRLESSKFTPNVFGVLIIAFSEMGL 141

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
            +EA+  +  M +    Q   A N +L  + ++    +    + + V +   P+  ++  
Sbjct: 142 VEEALWVYYKMDVLPAMQ---ACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGT 198

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L++G  ++G+  +A + F EM+E+  +    V+ Y   +  L    ++ EA    R M+ 
Sbjct: 199 LIDGCCRQGDFLKAFRLFDEMIEKKIF--PTVVIYTILIRGLCGESRISEAESMFRTMRN 256

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
               P L  ++  +D   K+     A++L+  M+G G  L+PN++ +  +I  LC  D++
Sbjct: 257 SGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDG--LLPNVVTFGILIDGLCKTDEM 314

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
            +  +F   M   G  P+   YN + +   K   + E      E+ K+E  P        
Sbjct: 315 VSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILP-------- 366

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
                         +++ Y +             L+ GL  + R+ +     +EM  +  
Sbjct: 367 --------------DVFTYSI-------------LIKGLCGVDRMEEADGLLQEMKKKGF 399

Query: 463 LIYEVTMHKLKKAFYNES 480
           L   VT + L   +  E 
Sbjct: 400 LPNAVTYNTLIDGYCKEG 417


>gi|414590400|tpg|DAA40971.1| TPA: hypothetical protein ZEAMMB73_404079 [Zea mays]
          Length = 745

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 102/429 (23%), Positives = 183/429 (42%), Gaps = 31/429 (7%)

Query: 76  GIIPTPDLVHEVL-QLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGR------ 128
           GI P+P+  + VL +L  D    A++ F+        S   +N+++  L   GR      
Sbjct: 227 GISPSPEACNAVLSRLPLDE---AIELFQELPHKNVCS---YNILLKALCDAGRVKDARQ 280

Query: 129 -FEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS 187
            F++M +A  V+         T+  +   +C  G+ + AV   D M   GVE +     S
Sbjct: 281 LFDEMASAPDVV---------TYGILIHGHCALGELENAVKLLDEMVAGGVEPNATVYTS 331

Query: 188 LLSAICRQENQTSRALEFL-NRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
           +++ +C  +   S AL  + + V++ V  D   +  +L G+  +G++  A + F EM +R
Sbjct: 332 VVALLC-DKGWISDALRVVEDMVQRKVILDEALYTTVLSGFCNKGDLVSARRWFDEM-QR 389

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
                + V  Y T +  L R  +++EA K L+ M           ++  +D   K     
Sbjct: 390 KGLATDGV-TYTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGYCKRGKMA 448

Query: 307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM 366
            A Q+ + MV  G  + PN++ Y A+   LC   DV        +M   G   ++ TYN 
Sbjct: 449 EAFQMHNAMVQRG--VTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNS 506

Query: 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 426
           +   L K   + +  +   +M     +P      T I  L  + + + A  +   +L+ G
Sbjct: 507 LINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKG 566

Query: 427 ILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFY--NESRSMR 484
           I P   + N L+ G    GR+   ++  + ML + I     T + L K +   N  +S  
Sbjct: 567 IKPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENNMKSTT 626

Query: 485 DIFDSLERR 493
           +I+  +  R
Sbjct: 627 EIYKGMRSR 635



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/359 (19%), Positives = 147/359 (40%), Gaps = 10/359 (2%)

Query: 144 VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRAL 203
           +L    + ++   +C  G    A   FD M   G+  D V   ++++ +CR   +   A 
Sbjct: 358 ILDEALYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTMINGLCRAV-ELEEAE 416

Query: 204 EFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI 262
           + L  +  + +D D  ++ +L++G+ K G + EA +    MV+R      +V+ Y     
Sbjct: 417 KLLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQR--GVTPNVVTYTALTD 474

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ-LWDIMVGIGFN 321
            L +   V  A + L  M  +        +++ ++ L K      A++ + D+       
Sbjct: 475 GLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLEQAMRTMADMDTAC--- 531

Query: 322 LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 381
           L P++  Y  +I  LC + D+D       +M+  G  P  +TYN++      + RV   +
Sbjct: 532 LKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGK 591

Query: 382 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 441
           K    M++    P      + +      +  +   EI+  +    + P E + N L+ G 
Sbjct: 592 KLLDWMLEKNIHPNAATYNSLMKQYCIENNMKSTTEIYKGMRSRDVGPNENTYNILIKGH 651

Query: 442 RNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLERRCKTSQ 498
                + +   F +EM+ +   +   +   L +    + +    R++F  + +   T++
Sbjct: 652 CKARNMKEALYFHDEMIQKGFRLTATSYSALIRLLNKKKKFVEARELFHDMRKEGLTAE 710


>gi|147797511|emb|CAN71434.1| hypothetical protein VITISV_010168 [Vitis vinifera]
          Length = 814

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 93/420 (22%), Positives = 169/420 (40%), Gaps = 61/420 (14%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYD 164
           GRG  +  +  +++V    K G  ++ +  +  M++ G+ L+  TF  +   +    + D
Sbjct: 222 GRGW-VDGHVLSILVLTFSKCGEVDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVD 280

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAIL 223
           +A+  F  M   G   DV   ++L+  +C ++ +  +AL  L+ +K++ +DPD    + L
Sbjct: 281 KALQLFKKMQKSGFAPDVSVYDALIGGLCAKK-EIEKALHLLSEMKELGIDPDIQILSKL 339

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           +    +E ++    +   E +E  +     +L Y + L  L+ GK VD+A   L  M G+
Sbjct: 340 IPYCSEEVDIY---RLIEERLEDLD-TEAMLLLYNSVLNGLVNGKSVDKAYYLLXAMTGD 395

Query: 284 N---------------------------------------------------CFPTLKFF 292
           N                                                   C   +  +
Sbjct: 396 NYTDNFEVNKFFMVKEMVRPXTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLY 455

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +N +D L   N       L   M G GF   P    +N++ G LC  +DV        +M
Sbjct: 456 NNLIDKLSNSNRLEECYLLLKEMKGSGFR--PTQFTHNSIFGCLCRREDVTGALDMVREM 513

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
             HG  P    Y ++ + L K KR  E   F  EM++  + P  +  + AI   +     
Sbjct: 514 RVHGHEPWIKHYTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAV 573

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
           + A+EI+  I   G  P   + N L+ G   + R+S+     +EM+ + ++   VT + L
Sbjct: 574 DQALEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLL 633



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 125/298 (41%), Gaps = 6/298 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           +F+ + D  C  GK D A+  F  M   G +Q+V+  N+L+  +    N+       L  
Sbjct: 419 SFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKL-SNSNRLEECYLLLKE 477

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           +K     P   +   +     +  +V  A     EM  R   +   +  Y   +  L + 
Sbjct: 478 MKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREM--RVHGHEPWIKHYTLLVKQLCKR 535

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
           K+  EA  FL  M  E   P +  +S A+D  VK+     A++++  +   G+   P+++
Sbjct: 536 KRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGY--CPDVV 593

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            YN +I   C    V       D+MV  G  P  +TYN++ +   KN  + +       M
Sbjct: 594 AYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRM 653

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
           +  E +P  +   T I  L +A  P+ AI +WN +   G  P   S   L+ GL   G
Sbjct: 654 VGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIHGLCKCG 711



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 117/252 (46%), Gaps = 8/252 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           + L+V  L K  R  +  N +  M  +G L  +  +++  D +      D+A+  F  + 
Sbjct: 525 YTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDIC 584

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNV 233
             G   DVVA N+L++  C+ + + S A + L+  V K + P   ++ +L++GW K G++
Sbjct: 585 ARGYCPDVVAYNTLINGFCKVK-RVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDI 643

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           ++A      MV + E  P +V+ Y T +  L    + D+A+     M+G+ C P    F 
Sbjct: 644 DQAFHCLSRMVGK-EREP-NVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISFI 701

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +  L K      A+  +  M   G    P+ I+Y A+I    +N +    F    +MV
Sbjct: 702 ALIHGLCKCGWPDAALLYFREM---GERETPDTIVYVALITSFISNKNPTLAFEILKEMV 758

Query: 354 FHGAFPDSLTYN 365
             G FPD L  N
Sbjct: 759 AKGKFPDPLDKN 770



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/304 (22%), Positives = 134/304 (44%), Gaps = 7/304 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++++++D L   G+ +   +  R M   G   ++  + ++ D    + + +E  +    M
Sbjct: 419 SFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEECYLLLKEM 478

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
              G        NS+   +CR+E+ T  AL+ +  ++    +P    + +L++   K   
Sbjct: 479 KGSGFRPTQFTHNSIFGCLCRREDVTG-ALDMVREMRVHGHEPWIKHYTLLVKQLCKRKR 537

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
             EA     EMV R  + P+ ++AY   +   ++ K VD+AL+  R +      P +  +
Sbjct: 538 SAEACNFLAEMV-REGFLPD-IVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAY 595

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  ++   K+   + A  + D MV  G  L+P+++ YN +I   C N D+D  F    +M
Sbjct: 596 NTLINGFCKVKRVSEAHDILDEMVAKG--LVPSVVTYNLLIDGWCKNGDIDQAFHCLSRM 653

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
           V     P+ +TY  + + L    R  +    ++EM      P  ++    I  L     P
Sbjct: 654 VGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIHGLCKCGWP 713

Query: 413 EIAI 416
           + A+
Sbjct: 714 DAAL 717



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 79/338 (23%), Positives = 139/338 (41%), Gaps = 42/338 (12%)

Query: 98  AVDFFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFD 155
           A+  FR   R G + +   +N ++D L  + R E+ +  ++ MK  G      T  SIF 
Sbjct: 436 ALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEECYLLLKEMKGSGFRPTQFTHNSIFG 495

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVD 214
             C       A+     M +HG E  +     L+  +C+++ +++ A  FL   V++   
Sbjct: 496 CLCRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQLCKRK-RSAEACNFLAEMVREGFL 554

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           PD  +++  ++G+ K   V++A + F ++  R  + P+ V+AY T +    + K+V EA 
Sbjct: 555 PDIVAYSAAIDGFVKIKAVDQALEIFRDICAR-GYCPD-VVAYNTLINGFCKVKRVSEAH 612

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
             L  M  +   P++  ++  +D   K  D   A      MVG      PN+I Y  +I 
Sbjct: 613 DILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRMVGK--EREPNVITYTTLID 670

Query: 335 LLCNNDDVDNVFRFFDQM--------------VFHGAF--------------------PD 360
            LCN    D+    +++M              + HG                      PD
Sbjct: 671 GLCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIHGLCKCGWPDAALLYFREMGERETPD 730

Query: 361 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
           ++ Y  +    I NK      +   EM+     P PL+
Sbjct: 731 TIVYVALITSFISNKNPTLAFEILKEMVAKGKFPDPLD 768



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 90/416 (21%), Positives = 169/416 (40%), Gaps = 71/416 (17%)

Query: 83  LVHEVLQLSYDSPSS---AVDFFRWAG--RGQRLSPYAWNLMVDVLGK------------ 125
           L HEV++       S   A  FF WA    G   + Y +N M   L              
Sbjct: 93  LTHEVVENVLSGLKSWKIAYRFFNWASDQGGFNHNCYTYNAMASCLSHARQNAPLSLLSM 152

Query: 126 ---NGRFEQMWNAVRVMKEDGVLSLP-----------------TFASIFDSYCGAGKYDE 165
              N R      A+  + + G + L                  T  S+  +YC + K+D+
Sbjct: 153 DIVNSRCAMSPGALGAISKSGSIDLVEMRLKEMCDSGWEPDKYTLTSVLQAYCNSRKFDK 212

Query: 166 AVMSFDVMSMHG-VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAIL 223
           A+  F+ +   G V+  V+++  L  + C    +  +A E + R++ + +  +  +F +L
Sbjct: 213 ALSVFNEIYGRGWVDGHVLSILVLTFSKC---GEVDKAFELIERMEDLGIRLNEKTFCVL 269

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           + G+ ++  V++A + F +M ++  + P+ V  Y+  +  L   K++++AL  L  MK  
Sbjct: 270 IHGFVRQSRVDKALQLFKKM-QKSGFAPD-VSVYDALIGGLCAKKEIEKALHLLSEMKEL 327

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQ--LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
              P ++  S  +    +  D    ++  L D+      +    L++YN+V+  L N   
Sbjct: 328 GIDPDIQILSKLIPYCSEEVDIYRLIEERLEDL------DTEAMLLLYNSVLNGLVNGKS 381

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
           VD  +     M       D+ T N             EV KFF  M+K   +P   + + 
Sbjct: 382 VDKAYYLLXAMT-----GDNYTDNF------------EVNKFF--MVKEMVRPXTTSFSI 422

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
            I  L +  + ++A+ ++  ++  G        N L+  L N  RL +     +EM
Sbjct: 423 VIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEECYLLLKEM 478


>gi|359474464|ref|XP_003631475.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
 gi|297742067|emb|CBI33854.3| unnamed protein product [Vitis vinifera]
          Length = 767

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 84/401 (20%), Positives = 170/401 (42%), Gaps = 37/401 (9%)

Query: 97  SAVDFFRWAGRGQRL-SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           SA+DF R       L + Y +N ++  L K G  ++    +  MK  G+   + T++ + 
Sbjct: 308 SALDFVRSLISANGLVNVYCYNAIIHGLCKKGELDEALKVLEEMKSCGISPDVYTYSILI 367

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD 214
             +C  G  ++ +   + M    +E  +V+ +SL   +C++         F +       
Sbjct: 368 HGFCKQGDVEKGLYLIEEMKYSNMEPSLVSYSSLFHGLCKKRLSDISLDIFRDLGAAGYK 427

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEH--------------VLAYET 259
            D  +++IL++G+  +G+++ A+K   EMV      +P +              V A E 
Sbjct: 428 YDQTAYSILIKGFCMQGDLDSAHKLMEEMVRNNLAPDPSNFESLVHGFCKMGLWVNALEF 487

Query: 260 FLITL------------------IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
           F + L                   R  +V+EAL  +  M+ +  FP L  ++  ++ L K
Sbjct: 488 FNMMLEGGILPSIATCNVIIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCK 547

Query: 302 LNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS 361
              S  A++L+ +M  +  N++P++++Y+ +I       +       + +M+  G  PD 
Sbjct: 548 ERKSERALELFPLM--LKRNVLPSVVVYSTLIDGFAKQSNSQKALMLYARMLKIGVTPDM 605

Query: 362 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 421
           + Y ++   L    R+ E    F +M +N   P  ++  + I       +   A  ++N 
Sbjct: 606 VAYTILINILCHRSRMCEAYNLFKKMTENGMTPDKISYTSVIAGFCRIGDMRKAWALFNE 665

Query: 422 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
           +L+ G LP   +   L+ G   + R+       +EM  + I
Sbjct: 666 MLQRGHLPTVVTYTSLVDGYCKMNRIDIADMLIDEMKRKGI 706



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 84/387 (21%), Positives = 159/387 (41%), Gaps = 46/387 (11%)

Query: 111 LSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAV 167
           +SP  Y +++++    K G  E+    +  MK   +  SL +++S+F   C     D ++
Sbjct: 356 ISPDVYTYSILIHGFCKQGDVEKGLYLIEEMKYSNMEPSLVSYSSLFHGLCKKRLSDISL 415

Query: 168 MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW 227
             F  +   G + D  A + L+   C Q +  S        V+  + PD  +F  L+ G+
Sbjct: 416 DIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKLMEEMVRNNLAPDPSNFESLVHGF 475

Query: 228 EK-----------------------------------EGNVEEANKTFGEMVERFEWNPE 252
            K                                   EG VEEA     EM  +  +   
Sbjct: 476 CKMGLWVNALEFFNMMLEGGILPSIATCNVIIDAHCREGRVEEALNLMNEMQTQGIF--P 533

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
           ++  Y   +  L + ++ + AL+   +M   N  P++  +S  +D   K ++S  A+ L+
Sbjct: 534 NLFTYNAVINRLCKERKSERALELFPLMLKRNVLPSVVVYSTLIDGFAKQSNSQKALMLY 593

Query: 313 DIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 372
             M+ IG  + P+++ Y  +I +LC+   +   +  F +M  +G  PD ++Y  +     
Sbjct: 594 ARMLKIG--VTPDMVAYTILINILCHRSRMCEAYNLFKKMTENGMTPDKISYTSVIAGFC 651

Query: 373 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 432
           +   + +    F+EM++    PT +   + +      +  +IA  + + +   GI P   
Sbjct: 652 RIGDMRKAWALFNEMLQRGHLPTVVTYTSLVDGYCKMNRIDIADMLIDEMKRKGITPDVV 711

Query: 433 SANELLVGLRNLGRLSDVRRFAEEMLN 459
           + N L+   R  G L      A EMLN
Sbjct: 712 TYNVLIAAHRRRGNLDK----ALEMLN 734



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 84/388 (21%), Positives = 148/388 (38%), Gaps = 47/388 (12%)

Query: 141 EDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS 200
           +D   S+  F  +   +      + AV  F      G+E    + N LL   C  E    
Sbjct: 173 KDAARSVIVFDLLIKVFAANSMLENAVDVFLQAKKTGLELSTRSCNFLLK--CLAEANRR 230

Query: 201 RALEFLNRVKKIVDPDGDSFA-ILLEGWEKEGNVEEAN---KTFGEMVERFEWNPEH--V 254
             L  L    K   P  + F   ++  +  +GN  EA+   +   E++E  E N E   V
Sbjct: 231 EFLRSLFEEMKSTGPPPNVFTYTIMMNFYCKGNFGEADIDTRQATEILEEMERNGESPTV 290

Query: 255 LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314
           + Y T++  L R   V+ AL F+R +   N    +  ++  +  L K  +   A+++ + 
Sbjct: 291 VTYSTYIYGLCRVGYVESALDFVRSLISANGLVNVYCYNAIIHGLCKKGELDEALKVLEE 350

Query: 315 MVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN 374
           M   G +  P++  Y+ +I   C   DV+      ++M +    P  ++Y+ +F  L K 
Sbjct: 351 MKSCGIS--PDVYTYSILIHGFCKQGDVEKGLYLIEEMKYSNMEPSLVSYSSLFHGLCK- 407

Query: 375 KRVHEV------------------------------------EKFFHEMIKNEWQPTPLN 398
           KR+ ++                                     K   EM++N   P P N
Sbjct: 408 KRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKLMEEMVRNNLAPDPSN 467

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
             + +           A+E +N +LE GILP  A+ N ++      GR+ +      EM 
Sbjct: 468 FESLVHGFCKMGLWVNALEFFNMMLEGGILPSIATCNVIIDAHCREGRVEEALNLMNEMQ 527

Query: 459 NRRILIYEVTMHKLKKAFYNESRSMRDI 486
            + I     T + +      E +S R +
Sbjct: 528 TQGIFPNLFTYNAVINRLCKERKSERAL 555



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 3/99 (3%)

Query: 127 GRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAV 185
           G   + W     M + G L ++ T+ S+ D YC   + D A M  D M   G+  DVV  
Sbjct: 654 GDMRKAWALFNEMLQRGHLPTVVTYTSLVDGYCKMNRIDIADMLIDEMKRKGITPDVVTY 713

Query: 186 NSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAIL 223
           N L++A  R+     +ALE LN +K+  V PD  ++ +L
Sbjct: 714 NVLIAAH-RRRGNLDKALEMLNEMKENGVLPDHMTYMML 751


>gi|255538538|ref|XP_002510334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551035|gb|EEF52521.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 947

 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 91/405 (22%), Positives = 164/405 (40%), Gaps = 39/405 (9%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMK--EDGVLSLPTFASIFDSYCGAGKYD 164
           RG   +     L++    +  + E+    +R M+  E  VL    +  + D YC   K D
Sbjct: 282 RGILRNKVTLTLLIKGYCRQCKLEEAEKVLREMERSEGMVLDEYAYGVLIDGYCRVCKMD 341

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAIL 223
           +AV   D M   G+  ++   N+L++  C+   Q S A   L R V   ++P+  S++ L
Sbjct: 342 DAVRLRDEMLNVGLRMNLFICNALINGYCKN-GQVSEAERLLMRMVDWDLEPESYSYSTL 400

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           ++G+ +EG V +A   + EM+        +V+ + + L  L R    ++AL    +M   
Sbjct: 401 MDGFCREGLVTKAISVYNEMLR--VGIQSNVVTHNSLLKGLCRVGAFEDALHVWHLMLKR 458

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG-------FNLM------------- 323
              P    +   LD+L K+ +   A+ LW+ ++  G       FN M             
Sbjct: 459 GVTPDEVSYCTLLDLLFKMGEFFRALALWNDILARGYGRSTYAFNTMINGFCKMEKMIEA 518

Query: 324 -------------PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
                        P+ + Y  +I   C   +V+  F+  ++M      P    YN +   
Sbjct: 519 EETFNRMKELGFEPDGVTYRTLIDGYCKLGNVEEAFKVKEKMEKEAILPSIELYNSLIGG 578

Query: 371 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 430
           L K+K+  EV     EM      P  +   T I    D    + A   +  ++E G  P 
Sbjct: 579 LFKSKKTREVMDLLSEMCLKGLSPNVVTYGTLIAGWCDEGRLDKAFTAYFDMIEKGFAPN 638

Query: 431 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKA 475
               ++++  L  LGR+ +     ++M+N  + +      +L KA
Sbjct: 639 VIICSKIVSSLYRLGRIDEANMLLQKMVNLDVFLDHGYFDRLHKA 683



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 166/379 (43%), Gaps = 28/379 (7%)

Query: 100 DFFR----W---AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE-----DGVLSL 147
           +FFR    W     RG   S YA+N M++   K  +  +       MKE     DGV   
Sbjct: 479 EFFRALALWNDILARGYGRSTYAFNTMINGFCKMEKMIEAEETFNRMKELGFEPDGV--- 535

Query: 148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN 207
            T+ ++ D YC  G  +EA    + M    +   +   NSL+  + + + +T   ++ L+
Sbjct: 536 -TYRTLIDGYCKLGNVEEAFKVKEKMEKEAILPSIELYNSLIGGLFKSK-KTREVMDLLS 593

Query: 208 RV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
            +  K + P+  ++  L+ GW  EG +++A   + +M+E+  + P +V+     + +L R
Sbjct: 594 EMCLKGLSPNVVTYGTLIAGWCDEGRLDKAFTAYFDMIEK-GFAP-NVIICSKIVSSLYR 651

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST-HAVQLWDIM--VGIGFNLM 323
             ++DEA   L+ M   + F    +F    D L K +D    + ++ D +      F+L 
Sbjct: 652 LGRIDEANMLLQKMVNLDVFLDHGYF----DRLHKADDGNLDSQKIADTLDESSKSFSL- 706

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           PN ++YN  I  LC +  VD+  + F  ++  G  PD+ TY  +         V++    
Sbjct: 707 PNSVVYNIAIAGLCKSGKVDDAKKIFSSLLLRGFSPDNFTYCTLIHGYSAAGNVNDAFSL 766

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
             EM+K    P  +     I  L  +   + A ++++ +   G+ P   S N L+ G   
Sbjct: 767 RDEMLKRGLAPNIITYNALINGLCKSGNLDRAQKLFDKLHLKGLAPNVISYNILIDGYCK 826

Query: 444 LGRLSDVRRFAEEMLNRRI 462
            G   +      +ML   I
Sbjct: 827 NGNTREALDLRNKMLKEGI 845



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 147/349 (42%), Gaps = 38/349 (10%)

Query: 132 MWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
           +WN +  + ED   S   F  I   YC  G    A+  FD M   G    + + N LLS+
Sbjct: 133 VWNELVRVFEDFKFSPTVFDMILKIYCEKGMIKNALHVFDNMGKLGCVPSLRSCNRLLSS 192

Query: 192 ICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEM------- 243
           + R+  ++S A+   + + ++ + PD  + +I++  + K+G V  A     EM       
Sbjct: 193 LVRK-GESSNAILVYDHINRLGIVPDVFTCSIMVNAYCKDGWVNVAVDFVKEMDYLGFEL 251

Query: 244 -----------------VERFE-----WNPEHVLAYETFLITLIRGK----QVDEALKFL 277
                            +ER E          +L  +  L  LI+G     +++EA K L
Sbjct: 252 NVVTYNSLIDGCVSIGDMERAEMVLKLMGERGILRNKVTLTLLIKGYCRQCKLEEAEKVL 311

Query: 278 RVM-KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLL 336
           R M + E        +   +D   ++     AV+L D M+ +G  +  NL + NA+I   
Sbjct: 312 REMERSEGMVLDEYAYGVLIDGYCRVCKMDDAVRLRDEMLNVGLRM--NLFICNALINGY 369

Query: 337 CNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 396
           C N  V    R   +MV     P+S +Y+ + +   +   V +    ++EM++   Q   
Sbjct: 370 CKNGQVSEAERLLMRMVDWDLEPESYSYSTLMDGFCREGLVTKAISVYNEMLRVGIQSNV 429

Query: 397 LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
           +   + +  L      E A+ +W+ +L+ G+ P E S   LL  L  +G
Sbjct: 430 VTHNSLLKGLCRVGAFEDALHVWHLMLKRGVTPDEVSYCTLLDLLFKMG 478



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 60/308 (19%), Positives = 129/308 (41%), Gaps = 40/308 (12%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++  L K+ +  ++ + +  M   G+  ++ T+ ++   +C  G+ D+A  ++  M 
Sbjct: 572 YNSLIGGLFKSKKTREVMDLLSEMCLKGLSPNVVTYGTLIAGWCDEGRLDKAFTAYFDMI 631

Query: 175 MHGVEQDVVAVNSLLSAICR--QENQTSRALE------------FLNRVKKIVDPDGDS- 219
             G   +V+  + ++S++ R  + ++ +  L+            + +R+ K  D + DS 
Sbjct: 632 EKGFAPNVIICSKIVSSLYRLGRIDEANMLLQKMVNLDVFLDHGYFDRLHKADDGNLDSQ 691

Query: 220 --------------------FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYET 259
                               + I + G  K G V++A K F  ++ R  ++P++   Y T
Sbjct: 692 KIADTLDESSKSFSLPNSVVYNIAIAGLCKSGKVDDAKKIFSSLLLR-GFSPDN-FTYCT 749

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG 319
            +        V++A      M      P +  ++  ++ L K  +   A +L+D +   G
Sbjct: 750 LIHGYSAAGNVNDAFSLRDEMLKRGLAPNIITYNALINGLCKSGNLDRAQKLFDKLHLKG 809

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
             L PN+I YN +I   C N +        ++M+  G  P  +TY+ +     K   + +
Sbjct: 810 --LAPNVISYNILIDGYCKNGNTREALDLRNKMLKEGISPSLITYSALIYGFCKQGDMGK 867

Query: 380 VEKFFHEM 387
                 EM
Sbjct: 868 ATNLLDEM 875


>gi|359481971|ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Vitis vinifera]
          Length = 819

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 96/394 (24%), Positives = 173/394 (43%), Gaps = 18/394 (4%)

Query: 98  AVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           A++      RG  +SP  + +N+++  L K  R +        M +  V  +  T+ ++ 
Sbjct: 201 AIELMTCMKRGG-VSPGVFVYNVVIGGLCKEKRMKDAEKLFDEMLDRRVAPNRITYNTLI 259

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE--NQTSRALEFLNRVKKI 212
           D YC  G+ +EA    + M +  VE  ++  NSLL+ +CR +   +  R LE +     +
Sbjct: 260 DGYCKVGQLEEAFNIRERMKVENVEPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFV 319

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY--ETFLITLIRGKQV 270
             PD  ++  L +G  K GNV+ A+ T  E   R       +L Y     L  L +   +
Sbjct: 320 --PDRFTYTTLFDGHLKCGNVD-ASITLSEEAVR---KGVQILDYTCSILLNALCKEGNM 373

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYN 330
           ++A + L+        P   FF+  ++   ++ D   A    + M  +G  L PN + YN
Sbjct: 374 EKAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEAVG--LRPNHVTYN 431

Query: 331 AVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 390
           +++   C   +++   +   +MV  G  P+  TYN + +   ++       +   EM K 
Sbjct: 432 SLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCFQILEEMEKK 491

Query: 391 EWQPTPLNCATAITMLL-DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 449
             +P  ++    I  L  DA+  E  + I   ++  G++P     N L+ G    G+L D
Sbjct: 492 GLKPNVISYGCLINCLCKDANILEAEV-ILGDMVHRGVVPNAQIYNMLIDGSCIAGKLKD 550

Query: 450 VRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSM 483
             RF +EM+ R I+   VT + L      + + M
Sbjct: 551 AFRFFDEMVAREIVPTLVTYNILINGLCKKGKVM 584



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 82/369 (22%), Positives = 156/369 (42%), Gaps = 45/369 (12%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT-FASIFDSYCGAGKYDE 165
           +G ++  Y  +++++ L K G  E+    ++   E+G+  +   F +I + YC  G  ++
Sbjct: 351 KGVQILDYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGDINK 410

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A  + + M   G+  + V  NSL+   C  +N           V+K V P+ +++  L++
Sbjct: 411 AYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLID 470

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+ +    +   +   EM E+    P +V++Y   +  L +                   
Sbjct: 471 GYGRSCLFDRCFQILEEM-EKKGLKP-NVISYGCLINCLCKD------------------ 510

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
                  +N L+  V L D  H              ++PN  +YN +I   C    + + 
Sbjct: 511 -------ANILEAEVILGDMVHR------------GVVPNAQIYNMLIDGSCIAGKLKDA 551

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
           FRFFD+MV     P  +TYN++   L K  +V E E    E+ +       +   + I+ 
Sbjct: 552 FRFFDEMVAREIVPTLVTYNILINGLCKKGKVMEAENLASEITRKGLSFDVITYNSLISG 611

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI--- 462
              A   + A+E++  + ++GI P   + + L+ G    G L  V +  +EML   +   
Sbjct: 612 YSSAGNVQKALELYETMKKSGIKPTLNTYHRLIAGCGKEG-LVLVEKIYQEMLQMNLVPD 670

Query: 463 -LIYEVTMH 470
            +IY   +H
Sbjct: 671 RVIYNALIH 679



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 83/385 (21%), Positives = 151/385 (39%), Gaps = 39/385 (10%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G R +   +N +V    +    E+    ++ M E GVL ++ T+ ++ D Y  +  +D  
Sbjct: 422 GLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRC 481

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
               + M   G++ +V++   L++ +C+  N     +   + V + V P+   + +L++G
Sbjct: 482 FQILEEMEKKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQIYNMLIDG 541

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPE---------------------------------- 252
               G +++A + F EMV R E  P                                   
Sbjct: 542 SCIAGKLKDAFRFFDEMVAR-EIVPTLVTYNILINGLCKKGKVMEAENLASEITRKGLSF 600

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
            V+ Y + +        V +AL+    MK     PTL  +   +    K        +++
Sbjct: 601 DVITYNSLISGYSSAGNVQKALELYETMKKSGIKPTLNTYHRLIAGCGK-EGLVLVEKIY 659

Query: 313 DIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 372
             M+ +  NL+P+ ++YNA+I     + DV         M   G  PD +TYN +     
Sbjct: 660 QEMLQM--NLVPDRVIYNALIHCYVEHGDVQKACSLHSAMEAQGIQPDKMTYNCLILGHF 717

Query: 373 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 432
           K  R+H+V+   ++M      P        I       + + A   +  + ENG  P  +
Sbjct: 718 KEGRMHKVKNLVNDMKIRGLIPKTETYDILIVGHCKLKDFDGAYVWYREMFENGFTPSVS 777

Query: 433 SANELLVGLRNLGRLSDVRRFAEEM 457
             + L+ GLR  GR  D      EM
Sbjct: 778 ICDNLITGLREEGRSHDADVICSEM 802



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 83/389 (21%), Positives = 153/389 (39%), Gaps = 48/389 (12%)

Query: 92  YDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFA 151
           + SPS     F  +     + P   ++++ +  ++    +      +MK+DGVL  P+ A
Sbjct: 93  FSSPSHLYTLFSLSS--TPMKPLFSDMLLSICSESKMVSESAELYMLMKKDGVL--PSVA 148

Query: 152 SI---FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           S+    +S     +Y++ +  F  +   G+  D       + A  +      RA+E +  
Sbjct: 149 SLNLFLESLVSTKRYEDTLQLFSEIVESGLRPDQFMYGKAIQAAVKL-GDLKRAIELMTC 207

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           +K+  V P    + +++ G  KE  +++A K F EM++R    P  +  Y T +    + 
Sbjct: 208 MKRGGVSPGVFVYNVVIGGLCKEKRMKDAEKLFDEMLDR-RVAPNRI-TYNTLIDGYCKV 265

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
            Q++EA      MK EN  PT+                                     I
Sbjct: 266 GQLEEAFNIRERMKVENVEPTI-------------------------------------I 288

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            +N+++  LC    ++   R  ++M  +G  PD  TY  +F+  +K   V        E 
Sbjct: 289 TFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASITLSEEA 348

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
           ++   Q     C+  +  L      E A E+    LENG+ P+    N ++ G   +G +
Sbjct: 349 VRKGVQILDYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGDI 408

Query: 448 SDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
           +      E+M    +    VT + L K F
Sbjct: 409 NKAYTTIEKMEAVGLRPNHVTYNSLVKKF 437



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 92/227 (40%), Gaps = 2/227 (0%)

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
           V +   FL +L+  K+ ++ L+    +      P    +  A+   VKL D   A++L  
Sbjct: 147 VASLNLFLESLVSTKRYEDTLQLFSEIVESGLRPDQFMYGKAIQAAVKLGDLKRAIELMT 206

Query: 314 IMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 373
            M   G +  P + +YN VIG LC    + +  + FD+M+     P+ +TYN + +   K
Sbjct: 207 CMKRGGVS--PGVFVYNVVIGGLCKEKRMKDAEKLFDEMLDRRVAPNRITYNTLIDGYCK 264

Query: 374 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 433
             ++ E       M     +PT +   + +  L  A   E A  +   +   G +P   +
Sbjct: 265 VGQLEEAFNIRERMKVENVEPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFT 324

Query: 434 ANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 480
              L  G    G +      +EE + + + I + T   L  A   E 
Sbjct: 325 YTTLFDGHLKCGNVDASITLSEEAVRKGVQILDYTCSILLNALCKEG 371


>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
 gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
          Length = 468

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 91/390 (23%), Positives = 163/390 (41%), Gaps = 44/390 (11%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMK-EDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           A++ +V  L K G   Q       MK E  V SL T+  + +S C AG++ +A+  F  M
Sbjct: 12  AYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQSM 71

Query: 174 SMHG-VEQDVVAVNSLLSAIC---------------RQENQTSRALEFLNRVKKIV---- 213
                VE D    N+L+S +C               R +N  +    + + +K +V    
Sbjct: 72  KREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAK 131

Query: 214 ----------------DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
                           +PD  +F  +++G+ +  N+E+A + +  MVE   + P++V +Y
Sbjct: 132 PEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVES-GYKPDNV-SY 189

Query: 258 ETFLITLIRGKQVDEALKFLR--VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
              +  L +  ++DE+LK L    M+     P +  FS  +  L +  +   A++++  M
Sbjct: 190 HILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSM 249

Query: 316 VGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 375
           +  G    PN   Y  +I  LC  + V      F++M      PD++ YN +     K  
Sbjct: 250 LEAGCK--PNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRG 307

Query: 376 RVHEVEKFFHEMIKNE-WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 434
            + E EK + EM      QPT +   T I       +   A E+   +   G+     + 
Sbjct: 308 SMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADTCTY 367

Query: 435 NELLVGLRNLGRLSDVRRFAEEMLNRRILI 464
             L+ GL    +L +     ++M  ++ L+
Sbjct: 368 RILIAGLSRATKLDEALEVYKQMREKKFLL 397



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 82/402 (20%), Positives = 158/402 (39%), Gaps = 37/402 (9%)

Query: 98  AVDFFRWAGRGQRLSPYAW--NLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIF 154
           A+D F+   R +R+ P  W  N ++  L  +G  E     +  M++  + + + T++SI 
Sbjct: 64  ALDLFQSMKREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSII 123

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD 214
            S     K +E+    + M   G   DV A N ++    R  N       + + V+    
Sbjct: 124 KSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYK 183

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           PD  S+ IL+ G  K G ++E+ K   EM  R      +V+ + T +  L R  ++++AL
Sbjct: 184 PDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKAL 243

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI---------------- 318
           +    M    C P    ++  +  L +      A +L++ M                   
Sbjct: 244 EVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGY 303

Query: 319 ------------------GFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPD 360
                             G  L P ++ +N +I   C    +        +M   G   D
Sbjct: 304 CKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAAD 363

Query: 361 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 420
           + TY ++   L +  ++ E  + + +M + ++   P++C + +  L      + A  ++ 
Sbjct: 364 TCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFE 423

Query: 421 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
              ++G +P   +   L   L  LGR+ D ++  E    R I
Sbjct: 424 ATRKSGAVPNPETFRILSESLIKLGRVEDAQKLMEPAKARDI 465



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 108/247 (43%), Gaps = 10/247 (4%)

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
           AY+  + +L +   + +AL+    MK E+C P+L  ++  ++      +   A+ L+  M
Sbjct: 12  AYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQSM 71

Query: 316 VGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 375
                 + P+   YN +I  LC++ + +   +   +M       +  TY+ I + L+K  
Sbjct: 72  KREK-RVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEA 130

Query: 376 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 435
           +  E  K   EM+     P        +     ++  E A E++ +++E+G  P   S +
Sbjct: 131 KPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYH 190

Query: 436 ELLVGLRNLGRLSDVRRFAEEMLNR------RILIYEVTMHKLKKAFYNESRSMRDIFDS 489
            L+ GL  +G+L +  +   EM  R       ++ +   +H L +    E     ++F S
Sbjct: 191 ILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRT--GELEKALEVFGS 248

Query: 490 -LERRCK 495
            LE  CK
Sbjct: 249 MLEAGCK 255


>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 82/360 (22%), Positives = 151/360 (41%), Gaps = 5/360 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            ++++++ L K G+F++  + V  MK  G   S+ T+ +I D YC AGK  +A      M
Sbjct: 231 TFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEM 290

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
               +  + +  N L+   CR EN T+    F    ++ + P+  ++  L+ G    G +
Sbjct: 291 VAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKL 350

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           +EA     + +      P +V+ Y   +    + K + EA + L  +      P +  F+
Sbjct: 351 DEA-LGLQDKMSGMGLKP-NVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFN 408

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +D   K      A  L  +M+  G  + PN+  YN +I   C   +V    +   +M 
Sbjct: 409 TLIDAYGKAGRMDDAFLLRSMMLDTG--VCPNVSTYNCLIVGFCREGNVKEARKLAKEME 466

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
            +G   D +TYN++ + L K     +  +   EM +    P+ L     I          
Sbjct: 467 GNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNST 526

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 473
            A+ +   + + G      + N L+ G  N G+L +  R   EML + ++    T   L+
Sbjct: 527 AALNVRTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILR 586



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/380 (21%), Positives = 169/380 (44%), Gaps = 16/380 (4%)

Query: 119 MVDVLGKNGRFEQ--MWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176
           ++D   KN  +    +++++ V+   G  +      +  +Y   G+ D A+  FD    +
Sbjct: 129 LLDSFAKNAHYSNSTIFHSLSVLGSWGCANSIIVDMLVWAYVKNGEMDLALEGFDRAGDY 188

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA 236
           G     ++ N +L ++ ++         +   +++ +  +  +F +++ G  K G  ++A
Sbjct: 189 GFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKA 248

Query: 237 NKTFGEMVERFE-WN-PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
               G++VE  + W     V+ Y T +    +  ++ +A   L+ M  +   P    F+ 
Sbjct: 249 ----GDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNI 304

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
            +D   +  + T A ++++ M   G  L PN++ YN++I  LC+N  +D      D+M  
Sbjct: 305 LIDGFCRDENVTAAKKVFEEMQRQG--LQPNVVTYNSLINGLCSNGKLDEALGLQDKMSG 362

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 414
            G  P+ +TYN +     K K + E  +   ++ K    P  +   T I     A   + 
Sbjct: 363 MGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDD 422

Query: 415 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNRRILIYEVTMH 470
           A  + + +L+ G+ P  ++ N L+VG    G + + R+ A+EM    L   ++ Y + + 
Sbjct: 423 AFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVD 482

Query: 471 KLKKAFYNESRSMRDIFDSL 490
            L K    E+R    + D +
Sbjct: 483 ALCKK--GETRKAVRLLDEM 500



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/296 (22%), Positives = 131/296 (44%), Gaps = 40/296 (13%)

Query: 109 QRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +R+ P    +N+++D   ++            M+  G+  ++ T+ S+ +  C  GK DE
Sbjct: 293 KRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDE 352

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILL 224
           A+   D MS  G++ +VV  N+L++  C+++     A E L+ + K+ + P+  +F  L+
Sbjct: 353 ALGLQDKMSGMGLKPNVVTYNALINGFCKKK-MLKEAREMLDDIGKRGLAPNVITFNTLI 411

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           + + K G +++A      M++       +V  Y   ++   R   V EA K  + M+G  
Sbjct: 412 DAYGKAGRMDDAFLLRSMMLDTGVC--PNVSTYNCLIVGFCREGNVKEARKLAKEMEGNG 469

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFN----------------------- 321
               L  ++  +D L K  ++  AV+L D M  +G N                       
Sbjct: 470 LKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAAL 529

Query: 322 ----LM------PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMI 367
               LM       N++ YN +I   CN   ++   R  ++M+  G  P+  TY+++
Sbjct: 530 NVRTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDIL 585


>gi|224139020|ref|XP_002322960.1| predicted protein [Populus trichocarpa]
 gi|222867590|gb|EEF04721.1| predicted protein [Populus trichocarpa]
          Length = 694

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 146/316 (46%), Gaps = 8/316 (2%)

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDP-DGDSF 220
           K +EA+  ++++   G   D      L+  +C+     ++AL+ L   K   D  D  ++
Sbjct: 374 KVEEAISVWELLRRRGSGADSTTYGVLIHGLCKN-GHLNKALKILKEAKDGGDKLDAFAY 432

Query: 221 AILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           + +++G  K+G V+EA     +M +   E +P HV      +   +R  +++EA+ F R 
Sbjct: 433 SSIVDGLSKQGRVDEALGIVHQMDKYGCELSP-HVC--NPLINGFVRASKLEEAICFFRE 489

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
           M+ + C PT+  ++  ++ L K    + A      M+   +   P++I Y+ ++  LC  
Sbjct: 490 METKGCSPTVVSYNTLINGLCKAERFSDAYSFVKEMLEKDWK--PDMITYSLLMDGLCQG 547

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
             +D     + Q++  G  PD   +N++   L    ++ +    +  M ++   P  +  
Sbjct: 548 KKIDMALNLWRQVLVKGLEPDVTMHNILMHGLCSAGKIEDALLLYSNMKQSNCLPNLVTH 607

Query: 400 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
            T +  L  A E E+A  IW  + +NG  P   S N  L GL + GR+SD     ++ L 
Sbjct: 608 NTLMDGLYKARECEMASVIWACMFKNGFQPDIISYNITLKGLCSCGRISDGIALFDDALK 667

Query: 460 RRILIYEVTMHKLKKA 475
             IL   +T + L +A
Sbjct: 668 NGILPTSITWYILVRA 683



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 158/366 (43%), Gaps = 10/366 (2%)

Query: 115 AWNLMVDVLGKNGRFEQ---MWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
            +N+M++ L K GRF++   MW   R+ K +  + L T++S+    C  G  D AV  + 
Sbjct: 257 TYNVMINGLCKMGRFDESLEMWE--RMKKNECEMDLFTYSSLICGLCDVGNVDGAVEVYK 314

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
            M    V  DVV  N+LL+  CR   +   + E    + K    +  S+ I + G  +  
Sbjct: 315 EMVKRSVVVDVVTYNALLNGFCRA-GKIKESFELWVMMGKENCHNVVSYNIFIRGLFENR 373

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            VEEA   + E++ R     +    Y   +  L +   +++ALK L+  K          
Sbjct: 374 KVEEAISVW-ELLRRRGSGADST-TYGVLIHGLCKNGHLNKALKILKEAKDGGDKLDAFA 431

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           +S+ +D L K      A+ +   M   G  L P++   N +I        ++    FF +
Sbjct: 432 YSSIVDGLSKQGRVDEALGIVHQMDKYGCELSPHVC--NPLINGFVRASKLEEAICFFRE 489

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M   G  P  ++YN +   L K +R  +   F  EM++ +W+P  +  +  +  L    +
Sbjct: 490 METKGCSPTVVSYNTLINGLCKAERFSDAYSFVKEMLEKDWKPDMITYSLLMDGLCQGKK 549

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK 471
            ++A+ +W  +L  G+ P     N L+ GL + G++ D       M     L   VT + 
Sbjct: 550 IDMALNLWRQVLVKGLEPDVTMHNILMHGLCSAGKIEDALLLYSNMKQSNCLPNLVTHNT 609

Query: 472 LKKAFY 477
           L    Y
Sbjct: 610 LMDGLY 615



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 131/269 (48%), Gaps = 9/269 (3%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEA 166
           G +L  +A++ +VD L K GR ++    V  M + G  LS      + + +  A K +EA
Sbjct: 424 GDKLDAFAYSSIVDGLSKQGRVDEALGIVHQMDKYGCELSPHVCNPLINGFVRASKLEEA 483

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLE 225
           +  F  M   G    VV+ N+L++ +C+ E + S A  F+   ++K   PD  ++++L++
Sbjct: 484 ICFFREMETKGCSPTVVSYNTLINGLCKAE-RFSDAYSFVKEMLEKDWKPDMITYSLLMD 542

Query: 226 GWEKEGNVEEANKTFGE-MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           G  +   ++ A   + + +V+  E  P+ V  +   +  L    ++++AL     MK  N
Sbjct: 543 GLCQGKKIDMALNLWRQVLVKGLE--PD-VTMHNILMHGLCSAGKIEDALLLYSNMKQSN 599

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
           C P L   +  +D L K  +   A  +W  M   GF   P++I YN  +  LC+   + +
Sbjct: 600 CLPNLVTHNTLMDGLYKARECEMASVIWACMFKNGFQ--PDIISYNITLKGLCSCGRISD 657

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIK 373
               FD  + +G  P S+T+ ++   ++K
Sbjct: 658 GIALFDDALKNGILPTSITWYILVRAVLK 686



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 137/348 (39%), Gaps = 46/348 (13%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE--DGVLSLPTFA--SIFDSYCGAGK 162
           RG       + +++  L KNG   +   A++++KE  DG   L  FA  SI D     G+
Sbjct: 388 RGSGADSTTYGVLIHGLCKNGHLNK---ALKILKEAKDGGDKLDAFAYSSIVDGLSKQGR 444

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
            DEA+     M  +G E      N L++   R          F     K   P   S+  
Sbjct: 445 VDEALGIVHQMDKYGCELSPHVCNPLINGFVRASKLEEAICFFREMETKGCSPTVVSYNT 504

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+ G  K     +A     EM+E+ +W P+ ++ Y   +  L +GK++D AL   R    
Sbjct: 505 LINGLCKAERFSDAYSFVKEMLEK-DWKPD-MITYSLLMDGLCQGKKIDMALNLWR---- 558

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
                          +LVK                    L P++ M+N ++  LC+   +
Sbjct: 559 --------------QVLVK-------------------GLEPDVTMHNILMHGLCSAGKI 585

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
           ++    +  M      P+ +T+N + + L K +        +  M KN +QP  ++    
Sbjct: 586 EDALLLYSNMKQSNCLPNLVTHNTLMDGLYKARECEMASVIWACMFKNGFQPDIISYNIT 645

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 450
           +  L         I +++  L+NGILP   +   L+  +  LG L  +
Sbjct: 646 LKGLCSCGRISDGIALFDDALKNGILPTSITWYILVRAVLKLGPLDSL 693



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 93/434 (21%), Positives = 173/434 (39%), Gaps = 73/434 (16%)

Query: 78  IPTPDLVHEVLQL--SYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMW 133
           +P P    ++ +L  +  SP SA+  F  A R  G   SP+ + L++  L        + 
Sbjct: 4   LPKPLSARQLFKLLKAEKSPKSALALFDSASRQPGYTHSPHIFLLILRRLSDPKLVVHVT 63

Query: 134 NAVRVMK-------EDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS-MHGVEQDVVAV 185
             V ++K       ED VL+      +  +Y  +   +EA+  F  M  + G +  + + 
Sbjct: 64  RIVELIKTQKCKCTEDVVLT------VLKAYAKSKMPNEALDCFQKMEEIFGCKPGIRSY 117

Query: 186 NSLLSAICRQENQTSRALEFLN----------------------------RVKKIVD--- 214
           N+LL+A   + N   +A  FL                               K ++D   
Sbjct: 118 NALLNAFI-EANLLEKAESFLAYFETVGILPNLQTYNILIKISVKKRQFVEAKGLLDWMW 176

Query: 215 -----PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI-RGK 268
                PD  S+  ++ G  K G++  A + F EM ER    P+ V+ Y   +     RG 
Sbjct: 177 SKDLKPDVYSYGTVINGMVKSGDLVSALEVFDEMFER-GLVPD-VMCYNIMIDGFFKRGD 234

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
            V     + R++KG   +P +  ++  ++ L K+     ++++W+ M      +  +L  
Sbjct: 235 YVQGKEIWERLVKGSCVYPNVVTYNVMINGLCKMGRFDESLEMWERMKKNECEM--DLFT 292

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           Y+++I  LC+  +VD     + +MV      D +TYN +     +  ++ E  + +  M 
Sbjct: 293 YSSLICGLCDVGNVDGAVEVYKEMVKRSVVVDVVTYNALLNGFCRAGKIKESFELWVMMG 352

Query: 389 KNEWQPTPLNCATAITM------LLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 442
           K        NC   ++       L +  + E AI +W  +   G      +   L+ GL 
Sbjct: 353 KE-------NCHNVVSYNIFIRGLFENRKVEEAISVWELLRRRGSGADSTTYGVLIHGLC 405

Query: 443 NLGRLSDVRRFAEE 456
             G L+   +  +E
Sbjct: 406 KNGHLNKALKILKE 419



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 50/259 (19%), Positives = 104/259 (40%), Gaps = 10/259 (3%)

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIR---GKQVDEALKFLRVMKGENCFPTLK 290
           E++ K+   + +     P +  +   FL+ L R    K V    + + ++K + C  T  
Sbjct: 20  EKSPKSALALFDSASRQPGYTHSPHIFLLILRRLSDPKLVVHVTRIVELIKTQKCKCTED 79

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
                L    K      A+  +  M  I F   P +  YNA++      + ++    F  
Sbjct: 80  VVLTVLKAYAKSKMPNEALDCFQKMEEI-FGCKPGIRSYNALLNAFIEANLLEKAESFLA 138

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
                G  P+  TYN++ +  +K ++  E +     M   + +P   +  T I  ++ + 
Sbjct: 139 YFETVGILPNLQTYNILIKISVKKRQFVEAKGLLDWMWSKDLKPDVYSYGTVINGMVKSG 198

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR-----RILIY 465
           +   A+E+++ + E G++P     N ++ G    G     +   E ++        ++ Y
Sbjct: 199 DLVSALEVFDEMFERGLVPDVMCYNIMIDGFFKRGDYVQGKEIWERLVKGSCVYPNVVTY 258

Query: 466 EVTMHKL-KKAFYNESRSM 483
            V ++ L K   ++ES  M
Sbjct: 259 NVMINGLCKMGRFDESLEM 277


>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
 gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
          Length = 1320

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 77/390 (19%), Positives = 163/390 (41%), Gaps = 7/390 (1%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
           G+G +   Y +N ++ +L KNG   +    +R M++ GV      + ++   +C  G   
Sbjct: 305 GKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVS 364

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
            A   FD M    +  D+V   S++  IC+          F   + K ++PD  ++  L+
Sbjct: 365 AACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALI 424

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           +G+ K G ++EA     +MV++    P +V+ Y      L +  ++D A + L  M  + 
Sbjct: 425 DGYCKAGEMKEAFSVHNQMVQK-GLTP-NVVTYTALADGLCKNGEIDVANELLHEMSRKG 482

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
             P +  ++  ++ L K+ +    V+L + M   GF   P+ I Y  ++   C   ++  
Sbjct: 483 LQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGF--YPDTITYTTLMDAYCKMGEMAK 540

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
                  M+     P  +T+N++      +  + + E+    M++    P      + + 
Sbjct: 541 AHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMK 600

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 464
                +      EI+  + + G++P   + N L+ G      + +     +EM+ +   +
Sbjct: 601 QYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKGYSV 660

Query: 465 YEVTMHKLKKAFYNESR--SMRDIFDSLER 492
              T   L + FY   +    R +F+ + +
Sbjct: 661 TAATYDALIRGFYKRKKFVEARKLFEEMRK 690



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 146/339 (43%), Gaps = 8/339 (2%)

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPD 216
           C  G+ D+ +   D +   G++ D    N+++  +C+   +   A + L  ++K  V PD
Sbjct: 288 CRIGELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKN-GEVVEAEQLLRGMRKWGVFPD 346

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
              +  ++ G+ K GNV  A K F EM  R +  P+ ++ Y + +  + +  ++ EA + 
Sbjct: 347 NVVYTTVISGFCKLGNVSAACKLFDEM-RRKKIVPD-IVTYTSVIHGICKSGKMVEAREM 404

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLL 336
              M  +   P    ++  +D   K  +   A  + + MV  G  L PN++ Y A+   L
Sbjct: 405 FNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKG--LTPNVVTYTALADGL 462

Query: 337 CNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 396
           C N ++D       +M   G  P+  TYN I   L K   + +  K   EM    + P  
Sbjct: 463 CKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDT 522

Query: 397 LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 456
           +   T +       E   A E+   +L   + P   + N L+ G    G L D  R  E 
Sbjct: 523 ITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEW 582

Query: 457 MLNRRILIYEVTMHKLKKAF--YNESRSMRDIFDSLERR 493
           ML + I+    T + L K +   N  R+  +I+ ++  R
Sbjct: 583 MLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDR 621



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 132/308 (42%), Gaps = 53/308 (17%)

Query: 124 GKNGRFEQMWNA--VRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD 181
           GK     +M+N   V+ ++ D V    T+ ++ D YC AG+  EA    + M   G+  +
Sbjct: 396 GKMVEAREMFNEMLVKGLEPDEV----TYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPN 451

Query: 182 VVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTF 240
           VV   +L   +C+   +   A E L+ + +K + P+  ++  ++ G  K GN+E+  K  
Sbjct: 452 VVTYTALADGLCKN-GEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLM 510

Query: 241 GEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS---NALD 297
            EM +   + P+  + Y T +    +  ++ +A + LR+M  +   PTL  F+   N   
Sbjct: 511 EEM-DLAGFYPD-TITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFC 568

Query: 298 ILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGA 357
           +   L D    ++ W +  GI    MPN   +N+++   C  +++      +  M   G 
Sbjct: 569 MSGMLEDGERLIE-WMLEKGI----MPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGV 623

Query: 358 FPDSLTYNMI-------------------------------FECLI----KNKRVHEVEK 382
            PDS TYN++                               ++ LI    K K+  E  K
Sbjct: 624 MPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAATYDALIRGFYKRKKFVEARK 683

Query: 383 FFHEMIKN 390
            F EM K+
Sbjct: 684 LFEEMRKH 691



 Score = 40.8 bits (94), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 63/126 (50%), Gaps = 8/126 (6%)

Query: 341 DVDNVFRFFDQMVFH-----GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 395
           DV   F  F +M+ +     G+ P  L +++ F+ L++N  V E +K FH++++     +
Sbjct: 148 DVSKSFHLFTEMLIYTYKDWGSHP--LVFDLYFQVLVENGFVLEAQKLFHKLLRYGVVVS 205

Query: 396 PLNCATAITML-LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 454
             +C   ++ L  + +  +IA++++    E G+     S N +L  L  LG++ +     
Sbjct: 206 VDSCNLFLSRLSCNFEGIKIAVKVFEEFPELGVCWNTVSCNIVLHCLCQLGKVREAHNLL 265

Query: 455 EEMLNR 460
            +M +R
Sbjct: 266 VQMTDR 271


>gi|115473997|ref|NP_001060597.1| Os07g0671200 [Oryza sativa Japonica Group]
 gi|22831126|dbj|BAC15987.1| putative crp1(chloroplast RNA processing 1) protein [Oryza sativa
           Japonica Group]
 gi|113612133|dbj|BAF22511.1| Os07g0671200 [Oryza sativa Japonica Group]
          Length = 551

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 87/382 (22%), Positives = 167/382 (43%), Gaps = 21/382 (5%)

Query: 94  SPSSAVDFFRWAGR--------------GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM 139
           S S  VD +  +GR              G +++   +N ++D   +    +++   ++VM
Sbjct: 145 SASVVVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVM 204

Query: 140 KEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198
           + +G+  ++ T+  + D    A    +    F+ M    +  DV   +S+++A CR  N 
Sbjct: 205 ENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGN- 263

Query: 199 TSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
             RA E  +  V   ++P+  ++  L+ G+ K G +E A     +M  R     +  + +
Sbjct: 264 VRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQ--IVF 321

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317
            T +    R   VD+AL+   +M+       +  ++     L + N    A  L  IM+ 
Sbjct: 322 NTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIE 381

Query: 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
            G  + PN + Y  +I + CN  D+    R F +M  +GA P  +TYN++ +  IK   +
Sbjct: 382 KG--VRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSI 439

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 437
            E E+F +EM K    P   + A  +       + ++A+ ++  + + G  P   +   L
Sbjct: 440 REAERFKNEMEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTAL 499

Query: 438 LVGLRNLGRLSDVRRFAEEMLN 459
           + GL   GR  +  +  + ML 
Sbjct: 500 ISGLAKEGRSEEAFQLYDNMLG 521



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 120/278 (43%), Gaps = 7/278 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCG 159
           F    G G   + + +  +++   K G+ E     V  M+  GV ++   F ++ D YC 
Sbjct: 271 FDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCR 330

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGD 218
               D+A+    +M   G+E DV   N+L   + R+ N+   A   L   ++K V P+  
Sbjct: 331 KNMVDKALEIKMIMEKMGIELDVYTYNTLACGL-RRANRMDEAKNLLRIMIEKGVRPNHV 389

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           S+  L+     EG++ EA + F EM          ++ Y   +   I+   + EA +F  
Sbjct: 390 SYTTLISIHCNEGDMVEARRLFREMAG--NGAEPSLVTYNVMMDGYIKKGSIREAERFKN 447

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            M+ +   P +  ++  +           A++L++ M   G    PNL+ Y A+I  L  
Sbjct: 448 EMEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSK--PNLVAYTALISGLAK 505

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
               +  F+ +D M+  G  PD   Y+ +   L  +K+
Sbjct: 506 EGRSEEAFQLYDNMLGDGLTPDDALYSALVGSLHTDKK 543



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 114/282 (40%), Gaps = 44/282 (15%)

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH-----VLAYETFLITLIRGKQVDEA 273
           S +++++G+ K G V  A +   EM       P H      L Y + L    R K  D  
Sbjct: 145 SASVVVDGYCKSGRVAHARQLLDEM-------PRHGVKVNALCYNSLLDAYTREKDDDRV 197

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
            + L+VM+ E   PT+  ++  +D L    D T    +++ M     NL  ++  Y++VI
Sbjct: 198 AEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSK--NLSGDVYFYSSVI 255

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIF------------ECLIKNKRVHEV- 380
              C   +V      FD+ V +G  P+  TY  +             E L+ + +V  V 
Sbjct: 256 NAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVG 315

Query: 381 --EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 438
             +  F+ MI    +   ++ A  I M+++  +  I ++++ Y             N L 
Sbjct: 316 INQIVFNTMIDGYCRKNMVDKALEIKMIME--KMGIELDVYTY-------------NTLA 360

Query: 439 VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 480
            GLR   R+ + +     M+ + +    V+   L     NE 
Sbjct: 361 CGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTTLISIHCNEG 402


>gi|356540307|ref|XP_003538631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Glycine max]
          Length = 804

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 85/374 (22%), Positives = 159/374 (42%), Gaps = 8/374 (2%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAG-KYDE 165
           G  +  YA+  +++    +GR+    N    M++DG   +L T+  + + Y   G  +  
Sbjct: 188 GVHIDVYAYTCLINAYSSSGRYRDAVNLFNKMQQDGCNPTLITYNVVLNVYGKMGMPWSN 247

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILL 224
                + M   GV  D+   N+L+S  CR+ +    A+    ++K +   PD  ++  LL
Sbjct: 248 VTALVEAMRSRGVAPDLYTYNTLISC-CRRGSLYEEAVHLFQQMKLEGFTPDKVTYNALL 306

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           + + K    +EA K   EM E   ++P  V  Y + +    +G  ++EAL     M  + 
Sbjct: 307 DVFGKSRRPQEAMKVLQEM-EANGFSPTSV-TYNSLISAYAKGGLLEEALDLKTQMVHKG 364

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
             P +  ++  L    K      A+Q++  M  +G    PN+  +NA+I +  N      
Sbjct: 365 IKPDVFTYTTLLSGFEKAGKDDFAIQVFLEMRAVGCK--PNICTFNALIKMHGNRGKFAE 422

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
           + + FD +      PD +T+N +     +N    +V   F EM +  +        T I+
Sbjct: 423 MMKVFDDIKLCNCSPDIVTWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAERDTFNTLIS 482

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 464
                   + A+ ++  +LE G++P  ++ N +L  L   G      +   EM + R   
Sbjct: 483 AYSRCGSFDQAMAVYKSMLEAGVVPDLSTYNAVLAALARGGLWEQSEKVLAEMEDGRCKP 542

Query: 465 YEVTMHKLKKAFYN 478
            E++   L  A+ N
Sbjct: 543 NELSYSSLLHAYAN 556



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 69/318 (21%), Positives = 134/318 (42%), Gaps = 22/318 (6%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ--ENQTSRALEFL 206
           TF ++   +   GK+ E +  FD + +     D+V  N+LL+   +   ++Q S   + +
Sbjct: 406 TFNALIKMHGNRGKFAEMMKVFDDIKLCNCSPDIVTWNTLLAVFGQNGMDSQVSGIFKEM 465

Query: 207 NRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
            R   + + D  +F  L+  + + G+ ++A   +  M+E     P+ +  Y   L  L R
Sbjct: 466 KRAGFVAERD--TFNTLISAYSRCGSFDQAMAVYKSMLEA-GVVPD-LSTYNAVLAALAR 521

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND----STHAVQLWDIMVGIGFNL 322
           G   +++ K L  M+   C P    +S+ L       +    +  A +++   V     L
Sbjct: 522 GGLWEQSEKVLAEMEDGRCKPNELSYSSLLHAYANGKEIERMNAFAEEIYSGSVETHAVL 581

Query: 323 MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK---RVHE 379
           +  L++ N+   LL   +      R F ++   G  PD  T N +     + +   + HE
Sbjct: 582 LKTLVLVNSKSDLLIETE------RAFLELRRRGISPDITTLNAMLSIYGRKQMVAKAHE 635

Query: 380 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 439
           +  F HE     + P+     + + M   ++  + + EI   +LE G+ P   S N ++ 
Sbjct: 636 ILNFMHE---TRFTPSLTTYNSLMYMYSRSENFQKSEEILREVLEKGMKPDRISYNTVIY 692

Query: 440 GLRNLGRLSDVRRFAEEM 457
                GR+ +  R   EM
Sbjct: 693 AYCRNGRMKEASRIFSEM 710



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 69/316 (21%), Positives = 120/316 (37%), Gaps = 42/316 (13%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           WN ++ V G+NG   Q+    + MK  G V    TF ++  +Y   G +D+A+  +  M 
Sbjct: 442 WNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAERDTFNTLISAYSRCGSFDQAMAVYKSML 501

Query: 175 MHGVEQDVVAVNSLLSAICRQE--NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
             GV  D+   N++L+A+ R     Q+ + L  +   +    P+  S++ LL  +     
Sbjct: 502 EAGVVPDLSTYNAVLAALARGGLWEQSEKVLAEMEDGR--CKPNELSYSSLLHAYANGKE 559

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLIT-----LI---------------------- 265
           +E  N  F E +         VL     L+      LI                      
Sbjct: 560 IERMN-AFAEEIYSGSVETHAVLLKTLVLVNSKSDLLIETERAFLELRRRGISPDITTLN 618

Query: 266 -------RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI 318
                  R + V +A + L  M      P+L  +++ + +  +  +   + ++   ++  
Sbjct: 619 AMLSIYGRKQMVAKAHEILNFMHETRFTPSLTTYNSLMYMYSRSENFQKSEEILREVLEK 678

Query: 319 GFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVH 378
           G  + P+ I YN VI   C N  +    R F +M      PD +TYN        +    
Sbjct: 679 G--MKPDRISYNTVIYAYCRNGRMKEASRIFSEMKDSALVPDVVTYNTFIATYAADSMFA 736

Query: 379 EVEKFFHEMIKNEWQP 394
           E       MIK   +P
Sbjct: 737 EAIDVVRYMIKQGCKP 752



 Score = 45.8 bits (107), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 4/128 (3%)

Query: 182 VVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTF 240
           +   NSL+    R EN   ++ E L  V +K + PD  S+  ++  + + G ++EA++ F
Sbjct: 649 LTTYNSLMYMYSRSEN-FQKSEEILREVLEKGMKPDRISYNTVIYAYCRNGRMKEASRIF 707

Query: 241 GEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV 300
            EM +     P+ V+ Y TF+ T        EA+  +R M  + C P    +++ +D   
Sbjct: 708 SEMKDS-ALVPD-VVTYNTFIATYAADSMFAEAIDVVRYMIKQGCKPDQNTYNSIVDWYC 765

Query: 301 KLNDSTHA 308
           KL+    A
Sbjct: 766 KLDQRHEA 773



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 44/224 (19%), Positives = 85/224 (37%), Gaps = 41/224 (18%)

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAIL 223
           E   +F  +   G+  D+  +N++LS   R++   ++A E LN + +    P   ++  L
Sbjct: 597 ETERAFLELRRRGISPDITTLNAMLSIYGRKQ-MVAKAHEILNFMHETRFTPSLTTYNSL 655

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           +  + +  N +++ +   E++E+    P+ + +Y T +    R  ++ EA +    MK  
Sbjct: 656 MYMYSRSENFQKSEEILREVLEK-GMKPDRI-SYNTVIYAYCRNGRMKEASRIFSEMK-- 711

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
                               DS                L+P+++ YN  I     +    
Sbjct: 712 --------------------DSA---------------LVPDVVTYNTFIATYAADSMFA 736

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
                   M+  G  PD  TYN I +   K  + HE   F   +
Sbjct: 737 EAIDVVRYMIKQGCKPDQNTYNSIVDWYCKLDQRHEANSFVKNL 780


>gi|218188645|gb|EEC71072.1| hypothetical protein OsI_02831 [Oryza sativa Indica Group]
          Length = 800

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 138/289 (47%), Gaps = 7/289 (2%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEA 166
           G   + Y +N +++ L   GR  ++   ++  + +G V +  T+ SI + +  AG    A
Sbjct: 486 GVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSA 545

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLE 225
              +  M   G+  ++V   S +   C+  +    AL+ LN V+ K + PD  ++  L+ 
Sbjct: 546 FAVYQQMCAKGIPPNIVTYTSFIDGYCKT-SCCDLALKMLNDVRCKGLRPDIAAYNSLIY 604

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+ +EGN+  A +    M++  +    ++  Y +F+      K ++EAL+F   M  E  
Sbjct: 605 GFCQEGNMSHALQVLVLMLK--DGLLPNISVYNSFITGYKNLKMMEEALRFYEKMIKEGI 662

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
                 ++  +D   K  + T A++L+  MV  G   +P+ I + A+   LC N D+D+ 
Sbjct: 663 DLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGN--IPDHITFTALTHGLCRNGDIDDA 720

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
            +  D+M      P+ L YNM+    ++N ++ E  +   EM++ +  P
Sbjct: 721 RKLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQEAFRLHDEMLERKIMP 769



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 95/414 (22%), Positives = 172/414 (41%), Gaps = 54/414 (13%)

Query: 98  AVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDS 156
           AV  F+          + +N+++  L +  +  +  N    M E GV   + T+ S+   
Sbjct: 371 AVSLFKEMADSGIPDAFTYNILIHWLCQRRKIREALNLWEKMNETGVKPYIVTYHSLLLC 430

Query: 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDP 215
           YC  G  DEAV  +  M   G   +VV   +L+     +     +A   L  +K+  V  
Sbjct: 431 YCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKA-AFDKAYALLAEMKQNGVSC 489

Query: 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFE----------WN--------------- 250
           +  ++  L+ G    G V E     GEM++RFE          +N               
Sbjct: 490 NDYTYNTLINGLCVVGRVCEV----GEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSA 545

Query: 251 ------------PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDI 298
                       P +++ Y +F+    +    D ALK L  ++ +   P +  +++ +  
Sbjct: 546 FAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIYG 605

Query: 299 LVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAF 358
             +  + +HA+Q+  +M+  G  L+PN+ +YN+ I    N   ++   RF+++M+  G  
Sbjct: 606 FCQEGNMSHALQVLVLMLKDG--LLPNISVYNSFITGYKNLKMMEEALRFYEKMIKEGID 663

Query: 359 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL----DADEPEI 414
            D+ TY  + +   K+  V    K + EM+     P  +   TA+T  L    D D+   
Sbjct: 664 LDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHIT-FTALTHGLCRNGDIDDARK 722

Query: 415 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 468
            ++  N +    I P     N L+ G    G+L +  R  +EML R+I+  + T
Sbjct: 723 LLDEMNRL---DIRPNVLMYNMLINGYLRNGKLQEAFRLHDEMLERKIMPDDTT 773



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 84/389 (21%), Positives = 160/389 (41%), Gaps = 15/389 (3%)

Query: 98  AVDFFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFD 155
           A+D F    R G   +   + +++    + G  E+ +   R M++ G+L S   F  +  
Sbjct: 301 ALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVIK 360

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VD 214
                  + +AV  F  M+  G+  D    N L+  +C Q  +   AL    ++ +  V 
Sbjct: 361 GLLNDKLWKDAVSLFKEMADSGIP-DAFTYNILIHWLC-QRRKIREALNLWEKMNETGVK 418

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           P   ++  LL  +   G ++EA K + EM  +  + P +V+ Y T +   I     D+A 
Sbjct: 419 PYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGK-GFTP-NVVTYTTLMKGHINKAAFDKAY 476

Query: 275 KFLRVMK--GENCFP-TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA 331
             L  MK  G +C   T     N L ++ ++ +    ++ ++     GF  +P  + YN+
Sbjct: 477 ALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETE---GF--VPTAMTYNS 531

Query: 332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
           +I        + + F  + QM   G  P+ +TY    +   K        K  +++    
Sbjct: 532 IINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKG 591

Query: 392 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 451
            +P      + I           A+++   +L++G+LP  +  N  + G +NL  + +  
Sbjct: 592 LRPDIAAYNSLIYGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEAL 651

Query: 452 RFAEEMLNRRILIYEVTMHKLKKAFYNES 480
           RF E+M+   I +   T   L   F  + 
Sbjct: 652 RFYEKMIKEGIDLDTATYTTLIDGFSKDG 680



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 74/336 (22%), Positives = 134/336 (39%), Gaps = 54/336 (16%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLN 207
           TF S+ D     G+ +EA+   D +   G +  VV   +L+   C Q  +  +AL+ F  
Sbjct: 249 TFNSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQR-EVRKALDIFEE 307

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            ++  + P   ++ +L+ G  +EG  E+                    AYE         
Sbjct: 308 TLRDGLVPTDVTYTVLIRGCTEEGMPEK--------------------AYE--------- 338

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVK--LNDS--THAVQLWDIMVGIGFNLM 323
                     R M+     P+    +N  ++++K  LND     AV L+  M   G   +
Sbjct: 339 --------LCRQMRDHGLLPS----TNEFNMVIKGLLNDKLWKDAVSLFKEMADSG---I 383

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           P+   YN +I  LC    +      +++M   G  P  +TY+ +  C   N  + E  K 
Sbjct: 384 PDAFTYNILIHWLCQRRKIREALNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKL 443

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
           + EM    + P  +   T +   ++    + A  +   + +NG+   + + N L+ GL  
Sbjct: 444 YTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCV 503

Query: 444 LGRLSDV----RRFAEEMLNRRILIYEVTMHKLKKA 475
           +GR+ +V    +RF  E      + Y   ++   KA
Sbjct: 504 VGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKA 539



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 67/318 (21%), Positives = 125/318 (39%), Gaps = 8/318 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +N +VDVL K GR E+  +    +   G  +S+    ++   YC   +  +A+  F+ 
Sbjct: 248 FTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQREVRKALDIFEE 307

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEG 231
               G+    V    L+   C +E    +A E   +++   + P  + F ++++G   + 
Sbjct: 308 TLRDGLVPTDVTYTVLIRG-CTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVIKGLLNDK 366

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
             ++A   F EM +           Y   +  L + +++ EAL     M      P +  
Sbjct: 367 LWKDAVSLFKEMADS---GIPDAFTYNILIHWLCQRRKIREALNLWEKMNETGVKPYIVT 423

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           + + L           AV+L+  M G GF   PN++ Y  ++    N    D  +    +
Sbjct: 424 YHSLLLCYCVNGCMDEAVKLYTEMPGKGFT--PNVVTYTTLMKGHINKAAFDKAYALLAE 481

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M  +G   +  TYN +   L    RV EV +         + PT +   + I   + A  
Sbjct: 482 MKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGM 541

Query: 412 PEIAIEIWNYILENGILP 429
              A  ++  +   GI P
Sbjct: 542 MGSAFAVYQQMCAKGIPP 559



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 71/350 (20%), Positives = 139/350 (39%), Gaps = 14/350 (4%)

Query: 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK 210
           ++ FD+        +AV+S   +   G  Q    ++ LL+++CR     + A  + +   
Sbjct: 78  SAAFDARLAPDALVDAVLS--AVGGPGSRQATALLSRLLASLCRAGRAGAAAAAYASMEA 135

Query: 211 KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270
           + V PD  S   LL    +  +  +A     EM  R + +P     ++  +    +    
Sbjct: 136 RGVTPDAKSRTDLLAVTARSASAADALALLAEM--RGKGHPLDAWMFDVVMRACFKEGMY 193

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYN 330
           D+A++    M      P  +  S A+  L KL D+  A+ +   M   GF  +P    +N
Sbjct: 194 DDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLVLRKMQDAGF--VPWDFTFN 251

Query: 331 AVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 390
           +V+ +L     ++      D+++  G     +    +       + V +    F E +++
Sbjct: 252 SVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQREVRKALDIFEETLRD 311

Query: 391 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 450
              PT +     I    +   PE A E+   + ++G+LP     N ++ GL N     D 
Sbjct: 312 GLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVIKGLLNDKLWKDA 371

Query: 451 RRFAEEMLNRRI---LIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTS 497
               +EM +  I     Y + +H L      + R +R+  +  E+  +T 
Sbjct: 372 VSLFKEMADSGIPDAFTYNILIHWL-----CQRRKIREALNLWEKMNETG 416


>gi|297743170|emb|CBI36037.3| unnamed protein product [Vitis vinifera]
          Length = 646

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 150/347 (43%), Gaps = 7/347 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGA-GKYDE 165
           RG +L  +A+N+++D L K+ + +Q++   + MK           +I     G  GK DE
Sbjct: 254 RGYKLDIFAYNMLLDALAKDNKVDQVYMVFKDMKRKHCEPDEYTYTIMIRMTGKIGKADE 313

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDP--DGDSFAIL 223
           ++  F  M+  G   +++A N+++ A+            F   V ++ +   +   +A L
Sbjct: 314 SLTLFQEMTEKGYTPNLIAYNTMIQALANNRMVDKTIFLFSKMVVEVSNKFMNKSIYAYL 373

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           +    K G+  EA++ F  M    +       AY + L +L    +  EAL  L  +  +
Sbjct: 374 VRTLSKLGHASEAHRLFCNMWSFHDEGDRD--AYMSMLESLCDAGKTTEALDLLSKIHEK 431

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
                   ++  L  L KL  ++    L++ M   G +  P++  YN +I        V+
Sbjct: 432 RISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPS--PDIFSYNILISSFGRAGRVE 489

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
              + F+++      PD +++N +  CL KN  + E    F EM +    P  +  +T I
Sbjct: 490 EAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMREEGLSPDVVTYSTLI 549

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 450
                 D+ E+A  +++ +L  G  P   + N LL  L   GR ++ 
Sbjct: 550 ECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLERSGRTAEA 596



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 63/290 (21%), Positives = 132/290 (45%), Gaps = 9/290 (3%)

Query: 115 AWNLMVDVLGKNGRFEQ---MWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
           A+N M+  L  N   ++   +++ + V   +  ++   +A +  +    G   EA   F 
Sbjct: 332 AYNTMIQALANNRMVDKTIFLFSKMVVEVSNKFMNKSIYAYLVRTLSKLGHASEAHRLFC 391

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKE 230
            M     E D  A  S+L ++C    +T+ AL+ L+++ +K +  D   +  +L    K 
Sbjct: 392 NMWSFHDEGDRDAYMSMLESLC-DAGKTTEALDLLSKIHEKRISTDTVMYNTVLSALGKL 450

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
               + +  + +M +  +     + +Y   + +  R  +V+EA+K    ++  +C P + 
Sbjct: 451 KKTSDLHDLYEKMKQ--DGPSPDIFSYNILISSFGRAGRVEEAVKIFEELENSSCKPDII 508

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
            F++ ++ L K  D   A   +  M   G  L P+++ Y+ +I      D V+   R FD
Sbjct: 509 SFNSLINCLGKNGDIDEAHMRFKEMREEG--LSPDVVTYSTLIECFGKTDKVEMACRLFD 566

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
           +M+  G  P+ +TYN++ +CL ++ R  E    + ++ +    P  +  A
Sbjct: 567 EMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITYA 616



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 109/219 (49%), Gaps = 6/219 (2%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           + S+ +S C AGK  EA+     +    +  D V  N++LSA+ + + +TS   +   ++
Sbjct: 405 YMSMLESLCDAGKTTEALDLLSKIHEKRISTDTVMYNTVLSALGKLK-KTSDLHDLYEKM 463

Query: 210 KK-IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           K+    PD  S+ IL+  + + G VEEA K F E+ E     P+ ++++ + +  L +  
Sbjct: 464 KQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEEL-ENSSCKPD-IISFNSLINCLGKNG 521

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
            +DEA    + M+ E   P +  +S  ++   K +    A +L+D M+  G +  PN++ 
Sbjct: 522 DIDEAHMRFKEMREEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCS--PNIVT 579

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMI 367
           YN ++  L  +         + ++   G  PDS+TY ++
Sbjct: 580 YNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITYAVL 618



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 91/420 (21%), Positives = 160/420 (38%), Gaps = 60/420 (14%)

Query: 55  IICEI--LAHASSD---DIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQ 109
           +IC++  + H+SSD   D+   L    +  TP    E+L+   + P  +++FFR+     
Sbjct: 87  LICKVTKILHSSSDPFPDLSEYLQTLNLTITPSEASEILK-CLNHPHLSLEFFRFCSSNI 145

Query: 110 ---RLSPYAWNLMVDVLGKNG--RFEQMWNAVRVMKED----GVLSLPTFASIFDSYCGA 160
              + + + +N ++ +L K    R  +  + +R + +D    GV    +  +I     G 
Sbjct: 146 PKFQHNSFTYNRLLVILSKPSALRDSERLDLIRAILDDMERCGVRGSISTINILIGIFGG 205

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSF 220
           G   +    FD++    ++ +      LL A  R  N                       
Sbjct: 206 GA--DVERCFDLVKKWDLQMNCYTYKCLLQAHLRSNN----------------------- 240

Query: 221 AILLEGWEKEGNVEEANKTFGEMVE-RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
                          +NK F   VE R       + AY   L  L +  +VD+     + 
Sbjct: 241 ---------------SNKAFEVYVELRRRGYKLDIFAYNMLLDALAKDNKVDQVYMVFKD 285

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
           MK ++C P    ++  + +  K+  +  ++ L+  M   G+   PNLI YN +I  L NN
Sbjct: 286 MKRKHCEPDEYTYTIMIRMTGKIGKADESLTLFQEMTEKGYT--PNLIAYNTMIQALANN 343

Query: 340 DDVDNVFRFFDQMVFH--GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
             VD     F +MV      F +   Y  +   L K     E  + F  M     +    
Sbjct: 344 RMVDKTIFLFSKMVVEVSNKFMNKSIYAYLVRTLSKLGHASEAHRLFCNMWSFHDEGDRD 403

Query: 398 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
              + +  L DA +   A+++ + I E  I       N +L  L  L + SD+    E+M
Sbjct: 404 AYMSMLESLCDAGKTTEALDLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEKM 463



 Score = 46.6 bits (109), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 61/111 (54%), Gaps = 3/111 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++N +++ LGKNG  ++     + M+E+G+   + T++++ + +    K + A   FD M
Sbjct: 509 SFNSLINCLGKNGDIDEAHMRFKEMREEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEM 568

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAIL 223
              G   ++V  N LL  + R   +T+ A++   ++K+  + PD  ++A+L
Sbjct: 569 LAEGCSPNIVTYNILLDCLERS-GRTAEAVDLYAKLKQQGLTPDSITYAVL 618


>gi|226528493|ref|NP_001147073.1| ATP binding protein [Zea mays]
 gi|195607078|gb|ACG25369.1| ATP binding protein [Zea mays]
          Length = 655

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 87/391 (22%), Positives = 155/391 (39%), Gaps = 40/391 (10%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++  L +NG FE++   +  M E G    +  +A+I D  C  G    A    + M 
Sbjct: 265 FNTLISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGICKEGHLKVAHEILNRMP 324

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
            +G++ +VV  N+LL  +C  E              K    D  +F IL++ + + G V+
Sbjct: 325 SYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVD 384

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
              +   +M+         V+ Y T +    +   +DEA+  L+ M    C P    ++ 
Sbjct: 385 RVIELLEQML--VHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTI 442

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
            L  L        A  L   M+  G  L P  I +N +I  LC    V+       QM+ 
Sbjct: 443 VLKGLCSAERWVDAEDLMSQMIQQGCPLNP--ITFNTLINFLCKKGLVEQAIELLKQMLV 500

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL---NCATA--------- 402
           +G  PD ++Y+ + + L K  +  E  +  + M+     P  +   + A+A         
Sbjct: 501 NGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINK 560

Query: 403 -----------------------ITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 439
                                  I+ L    E E AIE   Y++ +G +P E++   L+ 
Sbjct: 561 VIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIR 620

Query: 440 GLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 470
           GL + G + + +    E+ ++  L   +  H
Sbjct: 621 GLASEGFVKEAQEMLTELCSKGALRKHLMKH 651



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 93/423 (21%), Positives = 178/423 (42%), Gaps = 12/423 (2%)

Query: 76  GIIPTPDLVHEVLQLSYDSPS--SAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQM 132
           G  P P + H +L+ +       SAV        RG  L     NL+++ +   G  ++ 
Sbjct: 152 GCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDKA 211

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
            + +R +   G    + ++ ++    C A ++       + M       ++V  N+L+S 
Sbjct: 212 LHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISY 271

Query: 192 ICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
           +CR      R  E L ++ +    PD   +A +++G  KEG+++ A++    M   +   
Sbjct: 272 LCRN-GLFERVHEVLAQMAEHGCTPDIRMYATIIDGICKEGHLKVAHEILNRM-PSYGLK 329

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P +V+ Y T L  L   ++ +E  + L  M  ++C      F+  +D   +       ++
Sbjct: 330 P-NVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIE 388

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
           L + M+  G   MP++I Y  VI   C    +D        M   G  P++++Y ++ + 
Sbjct: 389 LLEQMLVHG--CMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKG 446

Query: 371 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 430
           L   +R  + E    +MI+      P+   T I  L      E AIE+   +L NG  P 
Sbjct: 447 LCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPD 506

Query: 431 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDI--FD 488
             S + ++ GL   G+  +       M+N+ +    +    +  A   E R  + I  FD
Sbjct: 507 LISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFD 566

Query: 489 SLE 491
           +++
Sbjct: 567 NIQ 569


>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
 gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
          Length = 597

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 157/350 (44%), Gaps = 12/350 (3%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           ++ TF ++ +  C  G++ +AV  FD M   G + DV   N++++ +C+   +T+ A   
Sbjct: 162 TIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKI-GETAAAAGL 220

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L ++++    P+  +++ L++   ++  V EA   F  M  +   +P+ +  Y + +  L
Sbjct: 221 LKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAK-GISPD-IFTYTSLIQGL 278

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
            +  +  EA   L  M   N  P +  F+  +D   K    + A+ +   M  +G    P
Sbjct: 279 CKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVE--P 336

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           N++ Y++++       DV    + F  M+  G  P+  +YN++     K KR+ E  + F
Sbjct: 337 NVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLF 396

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
           +EMI     P  ++  T I       +   A +++  +  NG LP   + + LL G    
Sbjct: 397 NEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQ 456

Query: 445 GRLSDVRRFAEEM----LNRRILIYEVTMHKLKKAFYNESRSMRDIFDSL 490
           G L    R    M    L   +++Y + +H + K+     +  R +F  L
Sbjct: 457 GYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKS--GNHKDARKLFSEL 504



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/357 (22%), Positives = 156/357 (43%), Gaps = 8/357 (2%)

Query: 96  SSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASI 153
           + AV+ F     +G +   Y +N +++ L K G        ++ M+E G   ++ T++++
Sbjct: 180 AQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTL 239

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI- 212
            DS C     +EA+  F  M   G+  D+    SL+  +C+  ++   A   LN +  + 
Sbjct: 240 IDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCK-FSRWKEASALLNEMTSLN 298

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
           + PD  +F +L++ + KEG V EA      M E     P +V+ Y + +        V E
Sbjct: 299 IMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTE-MGVEP-NVVTYSSLMYGYSLWTDVVE 356

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAV 332
           A K   VM  + C P +  ++  ++   K      A+QL++ M+  G  L PN + YN +
Sbjct: 357 ARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQG--LTPNNVSYNTL 414

Query: 333 IGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 392
           I   C    +      F  M  +G  PD  TY+++ +   K   + +  + F  M     
Sbjct: 415 IHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYL 474

Query: 393 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 449
           +P  +     +  +  +   + A ++++ +   G+ P       ++ GL   G L +
Sbjct: 475 KPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDE 531



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 155/368 (42%), Gaps = 29/368 (7%)

Query: 98  AVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           A+D F +  + + +SP  + +  ++  L K  R+++    +  M    ++  + TF  + 
Sbjct: 252 ALDIFSYM-KAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLV 310

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD 214
           D++C  GK  EA+     M+  GVE +VV  +SL+       +       F   + K   
Sbjct: 311 DTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCK 370

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           P+  S+ IL+ G+ K   ++EA + F EM+ +    P +V +Y T +    +  ++ EA 
Sbjct: 371 PNIFSYNILINGYCKAKRIDEAMQLFNEMIHQ-GLTPNNV-SYNTLIHGFCQLGKLREAQ 428

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
              R M      P L  +S  LD   K      A +L+  M      L PNL+MY  ++ 
Sbjct: 429 DLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQST--YLKPNLVMYTILVH 486

Query: 335 LLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
            +C + +  +  + F ++   G  P    Y  I   L K   + E  + F  M  +   P
Sbjct: 487 AMCKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCPP 546

Query: 395 TPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG-LRNLGRLSDVRRF 453
             ++                    +N I+   +   + S   LLVG +R+ G ++DVR  
Sbjct: 547 DEIS--------------------YNVIIRGLLQHKDESRALLLVGEMRDRGFIADVRPC 586

Query: 454 AEEMLNRR 461
             E+   +
Sbjct: 587 LSEVCQGK 594



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 125/282 (44%), Gaps = 7/282 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +  +++ L K G F Q       M   G    + T+ +I +  C  G+   A      M
Sbjct: 165 TFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKM 224

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
              G + ++V  ++L+ ++CR +   + AL+  + +K K + PD  ++  L++G  K   
Sbjct: 225 EEAGCQPNMVTYSTLIDSLCR-DRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSR 283

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
            +EA+    EM       P+ ++ +   + T  +  +V EAL  L+ M      P +  +
Sbjct: 284 WKEASALLNEMTS-LNIMPD-IVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTY 341

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           S+ +       D   A +L+ +M+  G    PN+  YN +I   C    +D   + F++M
Sbjct: 342 SSLMYGYSLWTDVVEARKLFHVMITKGCK--PNIFSYNILINGYCKAKRIDEAMQLFNEM 399

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
           +  G  P++++YN +     +  ++ E +  F  M  N   P
Sbjct: 400 IHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLP 441



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/251 (21%), Positives = 99/251 (39%), Gaps = 5/251 (1%)

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR-GKQVDEALKFLRVMKGENCFPTLK 290
           N+++A  +F  M+ R       ++ +   L  +++ G+  D  +   + M+     P + 
Sbjct: 72  NIDDALASFNHMLHRKPL--PCIIQFAKLLSAIVKMGQYYDVVISLSKQMELVGLSPNIY 129

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
             S  ++   +L        +   ++ +G  L P ++ +  +I  LC   +       FD
Sbjct: 130 TLSIFMNCFCQLQRVDLGFSVLAKVIKLG--LQPTIVTFTTLINGLCKVGEFAQAVELFD 187

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
            MV  G  PD  TYN I   L K            +M +   QP  +  +T I  L    
Sbjct: 188 DMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDR 247

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 470
               A++I++Y+   GI P   +   L+ GL    R  +      EM +  I+   VT +
Sbjct: 248 LVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFN 307

Query: 471 KLKKAFYNESR 481
            L   F  E +
Sbjct: 308 VLVDTFCKEGK 318



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 64/332 (19%), Positives = 122/332 (36%), Gaps = 46/332 (13%)

Query: 150 FASIFDSYCGAGKYDEAVMSFD-VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           FA +  +    G+Y + V+S    M + G+  ++  ++  ++  C Q  +       L +
Sbjct: 95  FAKLLSAIVKMGQYYDVVISLSKQMELVGLSPNIYTLSIFMNCFC-QLQRVDLGFSVLAK 153

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           V K+ + P   +F  L+ G  K G   +A + F +MV +                     
Sbjct: 154 VIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAK--------------------- 192

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
                            C P +  ++  ++ L K+ ++  A  L   M   G    PN++
Sbjct: 193 ----------------GCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAG--CQPNMV 234

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            Y+ +I  LC +  V+     F  M   G  PD  TY  + + L K  R  E     +EM
Sbjct: 235 TYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEM 294

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
                 P  +     +       +   A+ +   + E G+ P   + + L+ G      +
Sbjct: 295 TSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDV 354

Query: 448 SDVRRFAEEMLNR----RILIYEVTMHKLKKA 475
            + R+    M+ +     I  Y + ++   KA
Sbjct: 355 VEARKLFHVMITKGCKPNIFSYNILINGYCKA 386


>gi|413933767|gb|AFW68318.1| hypothetical protein ZEAMMB73_786057 [Zea mays]
          Length = 645

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 124/273 (45%), Gaps = 5/273 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N++VD L +NG  +++   +  M E G +  + T+ ++ + +C  G  DEAVM    M+
Sbjct: 360 FNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRSMA 419

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G   + V+   +L  +C  E            +++   P+  +F  L+    K+G VE
Sbjct: 420 ACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVE 479

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           +A +   +M+     +P+ +++Y T +  L +    DEAL+ L VM  +   P    +S+
Sbjct: 480 QAIELLKQMLVN-GCSPD-LISYSTVIDGLGKAGNTDEALELLNVMVKKGMSPNTIIYSS 537

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
               L         +Q+++ +      +  + ++YNAVI  LC   + D    F   MV 
Sbjct: 538 IASALSGEGRINKVIQMFENIQDT--TVRSDAVLYNAVISSLCKRGETDRAIEFLAYMVS 595

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            G  P+  TY ++   L     V E ++   E+
Sbjct: 596 SGCVPNESTYTILIRGLASEGFVKEAQEILTEL 628



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 95/426 (22%), Positives = 170/426 (39%), Gaps = 39/426 (9%)

Query: 76  GIIPTPDLVHEVLQLSYDSPS--SAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQM 132
           G  PTP + H  L+ +  +     AV   R   GRG  L     NL++  +   G  ++ 
Sbjct: 141 GCAPTPPMYHVTLEAACRASGFRGAVGVLRDLHGRGCALDVGNCNLVLQAVCDQGPVDE- 199

Query: 133 WNAVRVMKEDGVLSLPTFA---------SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV 183
             AVR++++     LP+F          ++    C A ++       + M   G   ++V
Sbjct: 200 --AVRLLRD----LLPSFGCEPDVVSYNAVLRGLCMARRWGHVQDLMEEMVAAGCPPNIV 253

Query: 184 AVNSLLSAICRQENQTSRALEFLNRVKKI--------VDPDGDSFAILLEGWEKEGNVEE 235
             ++L+  +CR             RV ++          PD   +A +++G  KE  +E 
Sbjct: 254 TFSTLIGHLCRNG--------LFERVHEVHAQMAEHGCAPDVRMYATIIDGVCKEERLEV 305

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
           A      M   +  +P +V+ Y T L  L    + +EA   L  M  ++C      F+  
Sbjct: 306 ARGILNRM-PSYGLSP-NVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLDDVTFNIL 363

Query: 296 LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
           +D L +       +++ + M+  G   MP++I Y  VI   C    +D        M   
Sbjct: 364 VDFLCQNGLVDRVIEVLEQMLEHG--CMPDVITYTTVINGFCKEGLIDEAVMLLRSMAAC 421

Query: 356 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 415
           G  P++++Y ++ + L   +R  + E+   +MI+    P P+   T I  L      E A
Sbjct: 422 GCRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQA 481

Query: 416 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKA 475
           IE+   +L NG  P   S + ++ GL   G   +       M+ + +    +    +  A
Sbjct: 482 IELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEALELLNVMVKKGMSPNTIIYSSIASA 541

Query: 476 FYNESR 481
              E R
Sbjct: 542 LSGEGR 547



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 86/391 (21%), Positives = 157/391 (40%), Gaps = 40/391 (10%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           ++ ++  L +NG FE++      M E G    +  +A+I D  C   + + A    + M 
Sbjct: 255 FSTLIGHLCRNGLFERVHEVHAQMAEHGCAPDVRMYATIIDGVCKEERLEVARGILNRMP 314

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
            +G+  +VV  N+LL  +C  +              K    D  +F IL++   + G V+
Sbjct: 315 SYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLDDVTFNILVDFLCQNGLVD 374

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
              +   +M+E     P+ V+ Y T +    +   +DEA+  LR M    C P    ++ 
Sbjct: 375 RVIEVLEQMLEH-GCMPD-VITYTTVINGFCKEGLIDEAVMLLRSMAACGCRPNTVSYTI 432

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
            L  L        A +L   M+  G    PN + +N +I  LC    V+       QM+ 
Sbjct: 433 VLKGLCSAERWVDAEELMSQMIQQGCP--PNPVTFNTLINFLCKKGLVEQAIELLKQMLV 490

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL---NCATA--------- 402
           +G  PD ++Y+ + + L K     E  +  + M+K    P  +   + A+A         
Sbjct: 491 NGCSPDLISYSTVIDGLGKAGNTDEALELLNVMVKKGMSPNTIIYSSIASALSGEGRINK 550

Query: 403 -----------------------ITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 439
                                  I+ L    E + AIE   Y++ +G +P E++   L+ 
Sbjct: 551 VIQMFENIQDTTVRSDAVLYNAVISSLCKRGETDRAIEFLAYMVSSGCVPNESTYTILIR 610

Query: 440 GLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 470
           GL + G + + +    E+ ++  L   +  H
Sbjct: 611 GLASEGFVKEAQEILTELCSKGALRKHLMKH 641


>gi|255660912|gb|ACU25625.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
          Length = 481

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 100/400 (25%), Positives = 176/400 (44%), Gaps = 25/400 (6%)

Query: 77  IIPTPD--LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLM--VDVLGKNGRFEQM 132
           ++P+ D  LV+ VL  S  +   A+ FFRW  R           +  +++LG+  +    
Sbjct: 6   LVPSFDHELVYNVLH-SAKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +  M + G+      +  + DSY   G   E+V  FD M   GVE+ + + ++L   
Sbjct: 65  RCILLDMPKKGLEWDEDMWVMMIDSYGKQGIVQESVKLFDRMEELGVERTIKSYDALFKV 124

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           I R+         F   + + ++P   +F +L+ G+   G VE AN+ F +M  R E +P
Sbjct: 125 ILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVLIWGFFLSGKVETANRFFEDMKSR-EISP 183

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           + V+ Y T +    R K++ EA K+   MKG N  PT+  ++  +   V ++    A++L
Sbjct: 184 D-VVTYNTMINGYYRVKKMXEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242

Query: 312 WDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECL 371
            + M   GF + PN I Y+ ++  LCN + +        +M+     P   T N IF  L
Sbjct: 243 VEEMK--GFGIKPNAITYSTLLPGLCNAEKMSEARSILKEMMDKYLAP---TDNSIFMRL 297

Query: 372 I----KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 427
           I    K+  +         MI+        +    I     A + + A+++ + ++E  I
Sbjct: 298 ITSQCKSGHLDAASDVLKAMIRLSVPTEAGHYGVLIENFCKAGQYDQAVKLLDKVIEKDI 357

Query: 428 -------LPLEASA-NELLVGLRNLGRLSDVRRFAEEMLN 459
                  L LE SA N ++  L N G+ +       ++L 
Sbjct: 358 ILRPQSTLHLEPSAYNPMIEYLCNNGQAAKAETLVRQLLK 397



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 111/260 (42%), Gaps = 47/260 (18%)

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM----VERFEWNPEHVLAYETF 260
            L+  KK ++ D D + ++++ + K+G V+E+ K F  M    VER       + +Y+  
Sbjct: 68  LLDMPKKGLEWDEDMWVMMIDSYGKQGIVQESVKLFDRMEELGVER------TIKSYDAL 121

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF 320
              ++R  +   A ++   M  E   PT   F+               V +W      GF
Sbjct: 122 FKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFN---------------VLIW------GF 160

Query: 321 NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEV 380
            L                +  V+   RFF+ M      PD +TYN +     + K++ E 
Sbjct: 161 FL----------------SGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMXEA 204

Query: 381 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 440
           EK+F EM     +PT +   T I   +  D+ + A+ +   +   GI P   + + LL G
Sbjct: 205 EKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPG 264

Query: 441 LRNLGRLSDVRRFAEEMLNR 460
           L N  ++S+ R   +EM+++
Sbjct: 265 LCNAEKMSEARSILKEMMDK 284


>gi|224086982|ref|XP_002308024.1| predicted protein [Populus trichocarpa]
 gi|222854000|gb|EEE91547.1| predicted protein [Populus trichocarpa]
          Length = 789

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 125/275 (45%), Gaps = 39/275 (14%)

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
           D+F +L++ + K G  ++A +TFG M + F+  P+ V  Y   L  LI+   +  AL   
Sbjct: 127 DAFFVLIKVYLKMGLTDKAMETFGSMRD-FDCTPD-VYTYNMILDVLIQKNFLLLALTVY 184

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337
             M   NC P +  FS  +D L K  +   A+ L+D M   G  ++P+   Y  VI  LC
Sbjct: 185 TRMMKLNCLPNVATFSILIDGLCKSGNVKDALHLFDEMTQRG--ILPDAFTYCVVISGLC 242

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMI------------------------------ 367
            +  VD+ +R FD+M   G  PD +T N +                              
Sbjct: 243 RSKRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKDGYVLDVR 302

Query: 368 -FECLIKN----KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 422
            + CLI+     KR  +V+  + +MI++  +P        +  L +A +   A+E+ N +
Sbjct: 303 GYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDALELLNEM 362

Query: 423 LENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
            E+G++P     N L+ G  ++G LS+ R    E+
Sbjct: 363 TESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEI 397



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 144/320 (45%), Gaps = 12/320 (3%)

Query: 114 YAWNLMVDVL-GKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N+++DVL  KN     +    R+MK + + ++ TF+ + D  C +G   +A+  FD 
Sbjct: 162 YTYNMILDVLIQKNFLLLALTVYTRMMKLNCLPNVATFSILIDGLCKSGNVKDALHLFDE 221

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEG 231
           M+  G+  D      ++S +CR + +   A    +++K   V PD  +   LL G+    
Sbjct: 222 MTQRGILPDAFTYCVVISGLCRSK-RVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLD 280

Query: 232 NVEEANKTFGEMVERFEWNPE--HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
            V+EA      ++  FE +     V  Y   +  L R K+ ++     R M  +N  P +
Sbjct: 281 RVDEAF----SLLRLFEKDGYVLDVRGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDV 336

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
             ++  +  L +      A++L + M   G  ++P+ + YN +I   C+   +       
Sbjct: 337 YLYTIMMKGLAEAGKVRDALELLNEMTESG--VVPDTVCYNVLIKGFCDMGLLSEARSLQ 394

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 409
            ++  H  FP+  TY+++   + +N    + ++ F+EM K    P+ +   + I  L   
Sbjct: 395 LEISRHDCFPNVKTYSILISGMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKT 454

Query: 410 DEPEIAIEIWNYILENGILP 429
            + E A  +  Y +E G  P
Sbjct: 455 GQLEKA-HLLFYKMEIGRNP 473



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 95/446 (21%), Positives = 181/446 (40%), Gaps = 50/446 (11%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPY-AWNLMVDVLGKNGRFEQMWNAVRV 138
           +P +V  ++Q +  +P     FF WA   +R   + + +L+ D+L      E     +  
Sbjct: 58  SPKIVTSIIQ-NPPNPQLGFRFFIWASNFKRFRAWESCDLITDLLINQNGLELYCQTLEA 116

Query: 139 MKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           +K  G+ +    F  +   Y   G  D+A+ +F  M       DV   N +L  +  Q+N
Sbjct: 117 LKNGGIKVHNDAFFVLIKVYLKMGLTDKAMETFGSMRDFDCTPDVYTYNMILDVLI-QKN 175

Query: 198 QTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
               AL    R+ K+   P+  +F+IL++G  K GNV++A   F EM +R    P+    
Sbjct: 176 FLLLALTVYTRMMKLNCLPNVATFSILIDGLCKSGNVKDALHLFDEMTQR-GILPD-AFT 233

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFP---TLKFFSNALDILVKLNDSTHAVQLWD 313
           Y   +  L R K+VD+A +    MK     P   T     N   +L +++++   ++L++
Sbjct: 234 YCVVISGLCRSKRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFE 293

Query: 314 ----IMVGIGF--------------------------NLMPNLIMYNAVIGLLCNNDDVD 343
               ++   G+                          N+ P++ +Y  ++  L     V 
Sbjct: 294 KDGYVLDVRGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVR 353

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
           +     ++M   G  PD++ YN++ +       + E      E+ +++  P     +  I
Sbjct: 354 DALELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCFPNVKTYSILI 413

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
           + +        A EI+N + + G  P   + N L+ GL   G+L              +L
Sbjct: 414 SGMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKA----------HLL 463

Query: 464 IYEVTMHKLKKAFYNESRSMRDIFDS 489
            Y++ + +    F   S+    + DS
Sbjct: 464 FYKMEIGRNPSLFLRLSQGPSHVLDS 489



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 148/333 (44%), Gaps = 20/333 (6%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G  L    ++ ++  L +  R+E +    R M ED V   +  +  +      AGK  +A
Sbjct: 296 GYVLDVRGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDA 355

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQT-SRALEFLNRVKKIVDPDGDSFAILLE 225
           +   + M+  GV  D V  N L+   C     + +R+L+ L   +    P+  +++IL+ 
Sbjct: 356 LELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQ-LEISRHDCFPNVKTYSILIS 414

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA-LKFLRVMKGEN 284
           G  + G   +A + F EM E+    P  V  + + +  L +  Q+++A L F ++  G N
Sbjct: 415 GMCRNGLTRDAQEIFNEM-EKLGCYPSAV-TFNSLIDGLCKTGQLEKAHLLFYKMEIGRN 472

Query: 285 CFPTL-----KFFSNALD------ILVKLNDSTHAVQLWDIMVGIG-FNLMPNLIMYNAV 332
             P+L     +  S+ LD      ++ +L DS    + + I++ +      P +  YN +
Sbjct: 473 --PSLFLRLSQGPSHVLDSASLQKMVEQLCDSGLIHKAYRILMQLADSGDAPGIYTYNIL 530

Query: 333 IGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 392
           +   C   + +  ++ F +M F G  PD++TY  +   L++ +R  +  K F +M KN  
Sbjct: 531 VNGFCKLGNFNGAYKLFREMQFKGLSPDTVTYGTLINGLLRFQREEDAYKVFDQMEKNGC 590

Query: 393 QPTPLNCATAITMLLDADEPEIAIEIWNYILEN 425
            P      T +T +    E   A  +W   L N
Sbjct: 591 TPDAAVYRTMMTWMCRRMELPRAFSLWLKYLRN 623



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 70/318 (22%), Positives = 136/318 (42%), Gaps = 22/318 (6%)

Query: 128 RFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN 186
           R ++ ++ +R+ ++DG VL +  ++ +      A +Y++  + +  M    V+ DV    
Sbjct: 281 RVDEAFSLLRLFEKDGYVLDVRGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYT 340

Query: 187 SLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245
            ++  +  +  +   ALE LN + +  V PD   + +L++G+   G + EA ++    + 
Sbjct: 341 IMMKGLA-EAGKVRDALELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEA-RSLQLEIS 398

Query: 246 RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS 305
           R +  P +V  Y   +  + R     +A +    M+   C+P+   F++ +D L K    
Sbjct: 399 RHDCFP-NVKTYSILISGMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQL 457

Query: 306 THAVQLWDIMVGIGFNLMPNLIM--------------YNAVIGLLCNNDDVDNVFRFFDQ 351
             A  L+  M  IG N  P+L +                 ++  LC++  +   +R   Q
Sbjct: 458 EKAHLLFYKM-EIGRN--PSLFLRLSQGPSHVLDSASLQKMVEQLCDSGLIHKAYRILMQ 514

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           +   G  P   TYN++     K    +   K F EM      P  +   T I  LL    
Sbjct: 515 LADSGDAPGIYTYNILVNGFCKLGNFNGAYKLFREMQFKGLSPDTVTYGTLINGLLRFQR 574

Query: 412 PEIAIEIWNYILENGILP 429
            E A ++++ + +NG  P
Sbjct: 575 EEDAYKVFDQMEKNGCTP 592



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 82/370 (22%), Positives = 145/370 (39%), Gaps = 39/370 (10%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +++++  + +NG           M++ G   S  TF S+ D  C  G+ ++A + F  M
Sbjct: 408 TYSILISGMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHLLFYKM 467

Query: 174 SM-----------HGVEQ--DVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG-DS 219
            +            G     D  ++  ++  +C       +A   L ++    D  G  +
Sbjct: 468 EIGRNPSLFLRLSQGPSHVLDSASLQKMVEQLC-DSGLIHKAYRILMQLADSGDAPGIYT 526

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           + IL+ G+ K GN   A K F EM  +F+      + Y T +  L+R ++ ++A K    
Sbjct: 527 YNILVNGFCKLGNFNGAYKLFREM--QFKGLSPDTVTYGTLINGLLRFQREEDAYKVFDQ 584

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI-----MYNAVIG 334
           M+   C P    +   +  + +  +   A  LW          + N+         A+ G
Sbjct: 585 MEKNGCTPDAAVYRTMMTWMCRRMELPRAFSLW-------LKYLRNIRSQEDEAIKAIEG 637

Query: 335 LLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
                 +V+   R   +M F     D   Y +    L + +RV E  K F  + + +   
Sbjct: 638 YF-EKQEVEKAVRGLLEMDFKLNDFDLGPYAIWLIGLCQTRRVGEALKIFLILEEYKVVI 696

Query: 395 TPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 454
           TP  C   I  LL   + + AI+++ Y +E G L     AN +L  L        VRR  
Sbjct: 697 TPPCCVKLIYFLLKEGDLDRAIDVFLYTIEKGYLLRRRVANRILTKL--------VRRKG 748

Query: 455 EEMLNRRILI 464
           E   +R I +
Sbjct: 749 EMGKDRAIYL 758


>gi|359488009|ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 579

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 127/282 (45%), Gaps = 6/282 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF ++       GK  EA+  FD M   G   DVV   +L++ +C+  N TS A+  L  
Sbjct: 133 TFTTLIRGIYVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGN-TSAAIRLLGS 191

Query: 209 -VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            V+K   P+  ++  +++   K+  V EA   F EMV +   +P+ +  Y + +  L   
Sbjct: 192 MVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTK-GISPD-IFTYNSLIHALCNL 249

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
            +       L  M      P +  F+  +D L K    T A  + D M+  G    PN++
Sbjct: 250 CEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVE--PNVV 307

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            Y A++   C   ++D   + FD MV  G  P+ ++YN +     K +R+ +    F EM
Sbjct: 308 TYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEM 367

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
            + E  P  +  +T I  L   +  + AI +++ ++    +P
Sbjct: 368 CRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIP 409



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 135/295 (45%), Gaps = 5/295 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++N +VD L K G+  +  + V  M + GV  ++ T+ ++ D +C   + DEAV  FD M
Sbjct: 273 SFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTM 332

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G   +V++ N+L++  C+ +        F    ++ + PD  +++ L+ G      +
Sbjct: 333 VCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERL 392

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           ++A   F EMV   +    +++ Y   L  L + + + EA+  L+ ++G N  P ++  +
Sbjct: 393 QDAIALFHEMVACSQI--PNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNN 450

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
            A+D + +  +   A  L+  +   G  L P++  Y+ +I  LC    +D   + F +M 
Sbjct: 451 IAIDGMCRAGELEAARDLFSNLSSKG--LQPDVWTYSIMINGLCRRGLLDEASKLFREMD 508

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
            +G   +   YN I    ++N       +   EM+   +          + ML D
Sbjct: 509 ENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSADASTMTLFVKMLSD 563



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 140/342 (40%), Gaps = 6/342 (1%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F     +G     + +N ++  L     ++ +   +  M +  ++  + +F ++ D+ C 
Sbjct: 224 FSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCK 283

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
            GK  EA    D M   GVE +VV   +L+   C           F   V K   P+  S
Sbjct: 284 EGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVIS 343

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           +  L+ G+ K   +++A   FGEM  R E  P+ V  Y T +  L   +++ +A+     
Sbjct: 344 YNTLINGYCKIQRIDKAMYLFGEMC-RQELIPDTV-TYSTLIHGLCHVERLQDAIALFHE 401

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
           M   +  P L  +   LD L K      A+ L   + G   NL P++ + N  I  +C  
Sbjct: 402 MVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEG--SNLDPDIQVNNIAIDGMCRA 459

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
            +++     F  +   G  PD  TY+++   L +   + E  K F EM +N         
Sbjct: 460 GELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIY 519

Query: 400 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 441
            T     L  +E   AI++   ++  G    +AS   L V +
Sbjct: 520 NTITRGFLRNNETSRAIQLLQEMVARG-FSADASTMTLFVKM 560



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 123/282 (43%), Gaps = 14/282 (4%)

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAI 222
           D A+ SF+ M         V  N LL++I + ++  S  L   +++    + P+  +  I
Sbjct: 43  DGAISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHH-STLLSLSHQMDSFGIPPNIYTLHI 101

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG----KQVDEALKFLR 278
           L+  +     V  A     +++ +    P+      TF  TLIRG     ++ EAL    
Sbjct: 102 LINSFCHLNRVGFAFSVLAKIL-KLGHQPD----TATF-TTLIRGIYVEGKIGEALHLFD 155

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            M GE   P +  +   ++ L K+ +++ A++L   MV    N  PN+  YN +I  LC 
Sbjct: 156 KMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQK--NCQPNVFAYNTIIDSLCK 213

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
           +  V   F  F +MV  G  PD  TYN +   L        V    +EM+ ++  P  ++
Sbjct: 214 DRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVS 273

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 440
             T +  L    +   A ++ + +++ G+ P   +   L+ G
Sbjct: 274 FNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDG 315



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 2/155 (1%)

Query: 308 AVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMI 367
           A+ L+D M+G GF   P+++ Y  +I  LC   +     R    MV     P+   YN I
Sbjct: 150 ALHLFDKMIGEGFR--PDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTI 207

Query: 368 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 427
            + L K+++V E    F EM+     P      + I  L +  E +    + N ++++ I
Sbjct: 208 IDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKI 267

Query: 428 LPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
           +P   S N ++  L   G++++     ++M+ R +
Sbjct: 268 MPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGV 302



 Score = 47.4 bits (111), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 47/245 (19%), Positives = 90/245 (36%), Gaps = 4/245 (1%)

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P   + +   L ++ + K     L     M      P +      ++    LN    A  
Sbjct: 58  PPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNRVGFAFS 117

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
           +   ++ +G    P+   +  +I  +     +      FD+M+  G  PD +TY  +   
Sbjct: 118 VLAKILKLGHQ--PDTATFTTLIRGIYVEGKIGEALHLFDKMIGEGFRPDVVTYGTLING 175

Query: 371 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 430
           L K        +    M++   QP      T I  L    +   A  +++ ++  GI P 
Sbjct: 176 LCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPD 235

Query: 431 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFD 488
             + N L+  L NL     V     EM++ +I+   V+ + +  A   E +     D+ D
Sbjct: 236 IFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVD 295

Query: 489 SLERR 493
            + +R
Sbjct: 296 KMIQR 300


>gi|302816356|ref|XP_002989857.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
 gi|300142423|gb|EFJ09124.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
          Length = 394

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 159/363 (43%), Gaps = 11/363 (3%)

Query: 139 MKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           MK  G+  ++ TF S+    C     ++A+  F  M    V+ D      ++  +C+   
Sbjct: 5   MKAAGITPTIVTFGSLIRKLCELNFTNKALQIFHQMIDMKVKPDAFLYTVVIGHLCKINK 64

Query: 198 QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
               A  F   V+    PD  ++ +L+    K    E+ ++ F EM+ +   +PE ++ Y
Sbjct: 65  LDLAASYFEQMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGH-SPE-LVTY 122

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317
            T +    +  ++D+AL  +R +KG    P+   +S  +D L K +    A +L+++  G
Sbjct: 123 ATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHEEARELFEMAAG 182

Query: 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
                + ++I+Y + I  LC    +D       +M+  G  PD ++YN+I   L K+ RV
Sbjct: 183 D----VQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRV 238

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG-ILPLEASANE 436
            E ++   + ++ +  P    C   +  L  +   E A  I   +LE G   P   + + 
Sbjct: 239 SEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLEAGDRAPSVVTYSA 298

Query: 437 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSL-ERR 493
           ++ GL    RL D     ++M     +   VT   +  AF    R    R++F  + ER 
Sbjct: 299 VIDGLCKADRLDDAYIVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERG 358

Query: 494 CKT 496
           C +
Sbjct: 359 CAS 361



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 125/284 (44%), Gaps = 10/284 (3%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
           G    L  YA   +V+   K GR +Q  + +R +K  G   S   ++++ D  C   +++
Sbjct: 114 GHSPELVTYAT--VVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHE 171

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
           EA   F++ +  G  QDV+   S +S +C+           +  ++    PD  S+ +++
Sbjct: 172 EARELFEMAA--GDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVII 229

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL-RVMKGE 283
               K+  V EA +   + +ER +  P  V      +  L + ++V+EA   L R+++  
Sbjct: 230 YSLCKDNRVSEAKELMDQAMER-KCMP-GVPVCTVLVDGLCKSRRVEEACVILERMLEAG 287

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
           +  P++  +S  +D L K +    A  +   M   G   +P+++ Y A+I   C    +D
Sbjct: 288 DRAPSVVTYSAVIDGLCKADRLDDAYIVLQKMRRAG--CVPDVVTYTAIIDAFCKVGRLD 345

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
                F +M   G   D + YN++     +  +V E      EM
Sbjct: 346 EARELFQRMHERGCASDVVAYNILIRGYCRAAKVDEAIAMIEEM 389



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 79/395 (20%), Positives = 162/395 (41%), Gaps = 15/395 (3%)

Query: 75  TGIIPT----PDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFE 130
            GI PT      L+ ++ +L++ + +  + F +      +   + + +++  L K  + +
Sbjct: 8   AGITPTIVTFGSLIRKLCELNFTNKALQI-FHQMIDMKVKPDAFLYTVVIGHLCKINKLD 66

Query: 131 QMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLL 189
              +    M + G L    T+  +  S   A K+++    F+ M   G   ++V   +++
Sbjct: 67  LAASYFEQMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYATVV 126

Query: 190 SAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFE 248
           +  C+   +  +AL  + R+K     P G  ++ L++G  K    EEA + F    E   
Sbjct: 127 NGYCKA-GRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHEEARELF----EMAA 181

Query: 249 WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHA 308
            + + V+ Y +F+  L +  ++DEA      M    C P    ++  +  L K N  + A
Sbjct: 182 GDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEA 241

Query: 309 VQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG-AFPDSLTYNMI 367
            +L D    +    MP + +   ++  LC +  V+      ++M+  G   P  +TY+ +
Sbjct: 242 KELMD--QAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLEAGDRAPSVVTYSAV 299

Query: 368 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 427
            + L K  R+ +      +M +    P  +     I         + A E++  + E G 
Sbjct: 300 IDGLCKADRLDDAYIVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGC 359

Query: 428 LPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
                + N L+ G     ++ +     EEM  R I
Sbjct: 360 ASDVVAYNILIRGYCRAAKVDEAIAMIEEMAGRGI 394


>gi|77552391|gb|ABA95188.1| salt-inducible protein, putative [Oryza sativa Japonica Group]
          Length = 938

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 95/405 (23%), Positives = 176/405 (43%), Gaps = 19/405 (4%)

Query: 54  RIICEILAHASSDDIESALACTGIIPTPDLVHEVLQL--SYDSPSSAVDFF-RWAGRGQR 110
           R  C++    ++ D   A+   GI     +V  +LQ        S A+ +F ++   G  
Sbjct: 455 RSYCKMGNLINAVDHYEAMVSHGIETNCHIVSYLLQCFRKLGMTSEAIAYFLKFKDSGLH 514

Query: 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT-FASIFDSYCGAGKYDEAVMS 169
           L    +N+ +D   KNG   +    +  MK  G+      +  +   YC  G+   A   
Sbjct: 515 LDKVIYNIAMDTYCKNGNMNEAVKLLNEMKYGGLTPDKIHYTCLISGYCLKGEMQNAQQV 574

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWE 228
           F+ M    +E D+V  N L S  C+         + L+R+  + ++P+  ++ I + G+ 
Sbjct: 575 FEEMLKANIEPDIVTYNILASGFCK-SGLVMEVFDLLDRMADQGLEPNSLTYGIAIVGFC 633

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHV-LAYETFLITLIRGKQVDEA-LKFLRVMKGENCF 286
           + GN+ EA   F  + E+     +H+ + Y + +   +     D A + F+RV +  N  
Sbjct: 634 RGGNLSEAEVLFNVVEEK---GIDHIEVMYSSMVCGYLLSGWTDHAYMLFVRVARQGNLV 690

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346
                 S  ++ L ++ +   A  +  IM  +  +++P++I Y+ +I + C N D+D   
Sbjct: 691 DHFSC-SKLINDLCRVGNVQGASNVCKIM--LEHDVVPDVISYSKLISIYCQNGDMDKAH 747

Query: 347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406
            +F  MV  G   D + Y ++     K  R+ E  + F +M     +P  +    A T+L
Sbjct: 748 LWFHDMVQRGLSVDVIVYTILMNGYCKAGRLQEACQLFVQMTNLGIKPDVI----AYTVL 803

Query: 407 LDADEPEIAIEIWNYIL-ENGILPLEASANELLVGLRNLGRLSDV 450
           LD    E   + W  I  E     L A+ N+LL  ++++    DV
Sbjct: 804 LDGHLKETLQQGWEGIAKERRSFLLRANHNKLLSSMKDMQIEPDV 848



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 124/293 (42%), Gaps = 8/293 (2%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE--NQTSRALEFLN 207
           ++S     C  GKYD A +    ++   V  + +A N ++  +C++   ++  + LE  N
Sbjct: 380 YSSFLIGLCDCGKYDLAYVILQEINREKVPVEAMAYNMVMDGLCKEMRLDEAEKLLE--N 437

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           + ++  +PD   ++ L+  + K GN+  A   +  MV        H+++Y   L    + 
Sbjct: 438 KARQGSNPDVYGYSYLIRSYCKMGNLINAVDHYEAMVSHGIETNCHIVSY--LLQCFRKL 495

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
               EA+ +    K          ++ A+D   K  +   AV+L + M   G  L P+ I
Sbjct: 496 GMTSEAIAYFLKFKDSGLHLDKVIYNIAMDTYCKNGNMNEAVKLLNEMKYGG--LTPDKI 553

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            Y  +I   C   ++ N  + F++M+     PD +TYN++     K+  V EV      M
Sbjct: 554 HYTCLISGYCLKGEMQNAQQVFEEMLKANIEPDIVTYNILASGFCKSGLVMEVFDLLDRM 613

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 440
                +P  L    AI           A  ++N + E GI  +E   + ++ G
Sbjct: 614 ADQGLEPNSLTYGIAIVGFCRGGNLSEAEVLFNVVEEKGIDHIEVMYSSMVCG 666



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 116/259 (44%), Gaps = 20/259 (7%)

Query: 136 VRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
           VRV ++  ++   + + + +  C  G    A     +M  H V  DV++ + L+S  C+ 
Sbjct: 681 VRVARQGNLVDHFSCSKLINDLCRVGNVQGASNVCKIMLEHDVVPDVISYSKLISIYCQN 740

Query: 196 ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
            +     L F + V++ +  D   + IL+ G+ K G ++EA + F +M       P+ V+
Sbjct: 741 GDMDKAHLWFHDMVQRGLSVDVIVYTILMNGYCKAGRLQEACQLFVQMT-NLGIKPD-VI 798

Query: 256 AYETFLI-----TLIRG-----KQVDEAL------KFLRVMKGENCFPTLKFFSNALDIL 299
           AY   L      TL +G     K+    L      K L  MK     P +  ++  +D  
Sbjct: 799 AYTVLLDGHLKETLQQGWEGIAKERRSFLLRANHNKLLSSMKDMQIEPDVPCYTVLIDGK 858

Query: 300 VKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFP 359
            K      A +L+D M+  G  L P+   Y A+I   C+  ++        +M+  G  P
Sbjct: 859 CKAEYLVEARELFDEMLQKG--LTPDAYAYTALINGYCSQGEISKAEDLLQEMIDKGIEP 916

Query: 360 DSLTYNMIFECLIKNKRVH 378
           D LT++++ +  ++++++ 
Sbjct: 917 DELTFSVLNQSSLRSRKIQ 935



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 84/387 (21%), Positives = 151/387 (39%), Gaps = 52/387 (13%)

Query: 92  YDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTF 150
           YD  ++   F      G   S + WNL++  + + G +E +  A   MK   +   + TF
Sbjct: 286 YDVQATICLFSGICRLGVVPSVWTWNLLLKFIAETGEYEMVLAAYNEMKCFQLTPDVYTF 345

Query: 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK 210
           A +  S   A K DEA+  +  M+  GV+ D    +S L  +C                 
Sbjct: 346 AIVTRSLFQAKKVDEALQVWAEMTEMGVKPDARGYSSFLIGLC----------------- 388

Query: 211 KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270
              D      A ++        ++E N+         E  P   +AY   +  L +  ++
Sbjct: 389 ---DCGKYDLAYVI--------LQEINR---------EKVPVEAMAYNMVMDGLCKEMRL 428

Query: 271 DEALKFL--RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           DEA K L  +  +G N  P +  +S  +    K+ +  +AV  ++ MV  G     +++ 
Sbjct: 429 DEAEKLLENKARQGSN--PDVYGYSYLIRSYCKMGNLINAVDHYEAMVSHGIETNCHIVS 486

Query: 329 Y--NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 386
           Y       L   ++ +    +F D     G   D + YN+  +   KN  ++E  K  +E
Sbjct: 487 YLLQCFRKLGMTSEAIAYFLKFKDS----GLHLDKVIYNIAMDTYCKNGNMNEAVKLLNE 542

Query: 387 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 446
           M      P  ++    I+      E + A +++  +L+  I P   + N L  G    G 
Sbjct: 543 MKYGGLTPDKIHYTCLISGYCLKGEMQNAQQVFEEMLKANIEPDIVTYNILASGFCKSGL 602

Query: 447 LSDV----RRFAEEMLNRRILIYEVTM 469
           + +V     R A++ L    L Y + +
Sbjct: 603 VMEVFDLLDRMADQGLEPNSLTYGIAI 629


>gi|297807861|ref|XP_002871814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317651|gb|EFH48073.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 459

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 87/375 (23%), Positives = 163/375 (43%), Gaps = 16/375 (4%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYA--WNLMVDVLGKNGRFEQMWNAVR 137
           T + V  VL+ +  S + ++ FF WA      +P +  +  +   L  + ++E MW  ++
Sbjct: 76  TSEFVFRVLRATSRSANDSLRFFNWARSNPSYTPTSMEYEELAKSLASHKKYESMWKILK 135

Query: 138 VMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFD-VMSMHGVEQDVVAVNSLLSAICRQ 195
            MK+  + +S  T   I + Y   G  D+AV  F+ V    G +Q V   N+LL A+C  
Sbjct: 136 QMKDLSLDISGETLCFIIEQYGKNGHVDQAVELFNGVPKTLGCQQTVDVYNALLHALC-D 194

Query: 196 ENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV 254
                 A   + R ++K + PD  ++AIL+ GW   G ++EA +   EM  R  +NP   
Sbjct: 195 VKMFHGAYALIRRMIRKGLKPDKRTYAILVNGWCSAGKMKEAQEFLDEM-SRKGFNPP-A 252

Query: 255 LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314
              +  +  L+    ++ A + +  M      P +  F+  ++ + K  +    ++++  
Sbjct: 253 RGRDLLIEGLLNAGYLESAKEIVDKMTKGGFVPDILTFNTLIEAISKSGEVEFCIEMYYT 312

Query: 315 MVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN 374
              +G  L  ++  Y  +I  +     +D  FR  +  V  G  P    Y  I + + +N
Sbjct: 313 ACKLG--LCVDIDTYKTLIPAVSKIGKIDEAFRLLNNCVEDGHKPFPSLYAPIIKGMCRN 370

Query: 375 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL---ENGILPLE 431
               +   FF +M      P        ITM     +    ++  NY++   E G++P+ 
Sbjct: 371 GMFDDAFSFFSDMKVKAHPPNRPVYTMLITMCGRGGK---FVDAANYLVEMTEMGLVPIS 427

Query: 432 ASANELLVGLRNLGR 446
              + +  GL+N G+
Sbjct: 428 RCFDMVTDGLKNSGK 442



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 87/217 (40%), Gaps = 27/217 (12%)

Query: 247 FEW---NPEHV---LAYETFLITLIRGKQVDEALKFLRVMK-------GEN-CFPTLKFF 292
           F W   NP +    + YE    +L   K+ +   K L+ MK       GE  CF      
Sbjct: 98  FNWARSNPSYTPTSMEYEELAKSLASHKKYESMWKILKQMKDLSLDISGETLCF------ 151

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNL--MPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
                I+ +   + H  Q  ++  G+   L     + +YNA++  LC+       +    
Sbjct: 152 -----IIEQYGKNGHVDQAVELFNGVPKTLGCQQTVDVYNALLHALCDVKMFHGAYALIR 206

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
           +M+  G  PD  TY ++        ++ E ++F  EM +  + P        I  LL+A 
Sbjct: 207 RMIRKGLKPDKRTYAILVNGWCSAGKMKEAQEFLDEMSRKGFNPPARGRDLLIEGLLNAG 266

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
             E A EI + + + G +P   + N L+  +   G +
Sbjct: 267 YLESAKEIVDKMTKGGFVPDILTFNTLIEAISKSGEV 303


>gi|224125420|ref|XP_002329801.1| predicted protein [Populus trichocarpa]
 gi|222870863|gb|EEF07994.1| predicted protein [Populus trichocarpa]
          Length = 478

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 119/273 (43%), Gaps = 9/273 (3%)

Query: 127 GRFEQMWNAVRVM-KEDGVLSLPT---FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDV 182
           GR     +A+RV  K +     PT   + S+F       +   A+  +  M   GV Q V
Sbjct: 96  GRVHMPLDAIRVFHKMNDFGCKPTDKSYISVFAILVEENQLKVAMSFYKYMREMGVRQSV 155

Query: 183 VAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFG 241
           V++N L+ A+C+       A E    + K+  DPD  ++  L+ G  K G   EA + F 
Sbjct: 156 VSLNVLIKALCKNSGTIDAAFEIFREMPKRGCDPDSYTYGTLINGLCKLGKTFEAKELFK 215

Query: 242 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
           EM  +   +P  V+ Y   +  L +   VDEA+     MK +   P +  +S+ +D L K
Sbjct: 216 EMDTK-GCSPS-VVTYSCLMHGLCQAGNVDEAMGLFDKMKKKAIEPNVFTYSSLMDGLCK 273

Query: 302 LNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS 361
              S  A++L ++MV       PN++ Y+ +I  LC    +       D+M   G  PD+
Sbjct: 274 NGGSLEAMELLEMMVRKRHK--PNMVTYSTLINGLCKEGKLAEAVETLDRMKLQGLKPDA 331

Query: 362 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
             Y  I       ++  E   +  EM+  +  P
Sbjct: 332 GLYGKIINGFCNIRKFQEAATYLDEMVLGQISP 364



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 137/307 (44%), Gaps = 14/307 (4%)

Query: 98  AVDFFRWAGR-GQRLSPYAWNLMVDVLGKN-GRFEQMWNAVRVMKEDGV-LSLPTFASIF 154
           A+ F+++    G R S  + N+++  L KN G  +  +   R M + G      T+ ++ 
Sbjct: 139 AMSFYKYMREMGVRQSVVSLNVLIKALCKNSGTIDAAFEIFREMPKRGCDPDSYTYGTLI 198

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD 214
           +  C  GK  EA   F  M   G    VV  + L+  +C+  N       F    KK ++
Sbjct: 199 NGLCKLGKTFEAKELFKEMDTKGCSPSVVTYSCLMHGLCQAGNVDEAMGLFDKMKKKAIE 258

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           P+  +++ L++G  K G   EA +   EM+ R    P +++ Y T +  L +  ++ EA+
Sbjct: 259 PNVFTYSSLMDGLCKNGGSLEAMELL-EMMVRKRHKP-NMVTYSTLINGLCKEGKLAEAV 316

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY----- 329
           + L  MK +   P    +   ++    +     A    D MV +G  + PN + +     
Sbjct: 317 ETLDRMKLQGLKPDAGLYGKIINGFCNIRKFQEAATYLDEMV-LG-QISPNRVTWSLHVK 374

Query: 330 --NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
             N V+  LC N +++  F+ +  M   G   D+ T++ + +C  K   +H+  + F EM
Sbjct: 375 LNNMVVQGLCTNGNLNRSFQLYIGMRTRGISIDAGTFDSLVKCFCKKGDLHKAARIFDEM 434

Query: 388 IKNEWQP 394
           + +   P
Sbjct: 435 VLDGCVP 441



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 87/199 (43%), Gaps = 2/199 (1%)

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY 329
           +D A +  R M    C P    +   ++ L KL  +  A +L+  M   G +  P+++ Y
Sbjct: 172 IDAAFEIFREMPKRGCDPDSYTYGTLINGLCKLGKTFEAKELFKEMDTKGCS--PSVVTY 229

Query: 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389
           + ++  LC   +VD     FD+M      P+  TY+ + + L KN    E  +    M++
Sbjct: 230 SCLMHGLCQAGNVDEAMGLFDKMKKKAIEPNVFTYSSLMDGLCKNGGSLEAMELLEMMVR 289

Query: 390 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 449
              +P  +  +T I  L    +   A+E  + +   G+ P      +++ G  N+ +  +
Sbjct: 290 KRHKPNMVTYSTLINGLCKEGKLAEAVETLDRMKLQGLKPDAGLYGKIINGFCNIRKFQE 349

Query: 450 VRRFAEEMLNRRILIYEVT 468
              + +EM+  +I    VT
Sbjct: 350 AATYLDEMVLGQISPNRVT 368



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 114/273 (41%), Gaps = 22/273 (8%)

Query: 239 TFGEMVERF----EWNP----------EHVLAYETFLITLIRG-KQVDEALKFLRVMKGE 283
           TFG M+ +     E+ P          E     E   +++ RG  +V   L  +RV    
Sbjct: 52  TFGVMISKLVSANEFRPAEEMLNRMKEEKCRITEEIFLSICRGYGRVHMPLDAIRVFHKM 111

Query: 284 N---CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
           N   C PT K + +   ILV+ N    A+  +  M  +G  +  +++  N +I  LC N 
Sbjct: 112 NDFGCKPTDKSYISVFAILVEENQLKVAMSFYKYMREMG--VRQSVVSLNVLIKALCKNS 169

Query: 341 D-VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
             +D  F  F +M   G  PDS TY  +   L K  +  E ++ F EM      P+ +  
Sbjct: 170 GTIDAAFEIFREMPKRGCDPDSYTYGTLINGLCKLGKTFEAKELFKEMDTKGCSPSVVTY 229

Query: 400 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
           +  +  L  A   + A+ +++ + +  I P   + + L+ GL   G   +     E M+ 
Sbjct: 230 SCLMHGLCQAGNVDEAMGLFDKMKKKAIEPNVFTYSSLMDGLCKNGGSLEAMELLEMMVR 289

Query: 460 RRILIYEVTMHKLKKAFYNESRSMRDIFDSLER 492
           +R     VT   L      E + + +  ++L+R
Sbjct: 290 KRHKPNMVTYSTLINGLCKEGK-LAEAVETLDR 321


>gi|334183970|ref|NP_177858.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332197845|gb|AEE35966.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 402

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 82/339 (24%), Positives = 140/339 (41%), Gaps = 47/339 (13%)

Query: 98  AVDFFRWAGRGQ------RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTF 150
            VDF R   +G       +L+P  +N ++  L + G  E+M      M ED V   + TF
Sbjct: 99  VVDFCRTMRKGDSFEIKYKLTPKCYNNLLSSLARFGLVEEMKRLYTEMLEDLVSPDIYTF 158

Query: 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK 210
            ++ + YC  G   EA                  V  L+ A C                 
Sbjct: 159 NTLVNGYCKLGYVVEAKQ---------------YVTWLIQAGC----------------- 186

Query: 211 KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270
              DPD  ++   + G  +   V+ A K F EM +      E  ++Y   +  L   K++
Sbjct: 187 ---DPDYFTYTSFITGHCRRKEVDAAFKVFKEMTQNGCHRNE--VSYTQLIYGLFEAKKI 241

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYN 330
           DEAL  L  MK +NC P ++ ++  +D L      + A+ L+  M   G  + P+  MY 
Sbjct: 242 DEALSLLVKMKDDNCCPNVRTYTVLIDALCGSGQKSEAMNLFKQMSESG--IKPDDCMYT 299

Query: 331 AVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 390
            +I   C+ D +D      + M+ +G  P+ +TYN + +   K K VH+      +M++ 
Sbjct: 300 VLIQSFCSGDTLDEASGLLEHMLENGLMPNVITYNALIKGFCK-KNVHKAMGLLSKMLEQ 358

Query: 391 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
              P  +   T I     +   + A  + + + E+G++P
Sbjct: 359 NLVPDLITYNTLIAGQCSSGNLDSAYRLLSLMEESGLVP 397



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 59/269 (21%), Positives = 94/269 (34%), Gaps = 65/269 (24%)

Query: 186 NSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245
           N+LLS++ R          +   ++ +V PD  +F  L+ G+ K G V EA +    +++
Sbjct: 124 NNLLSSLARFGLVEEMKRLYTEMLEDLVSPDIYTFNTLVNGYCKLGYVVEAKQYVTWLIQ 183

Query: 246 RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC------FPTL-------KFF 292
               +P++   Y +F+    R K+VD A K  + M    C      +  L       K  
Sbjct: 184 A-GCDPDY-FTYTSFITGHCRRKEVDAAFKVFKEMTQNGCHRNEVSYTQLIYGLFEAKKI 241

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
             AL +LVK+ D                N  PN+  Y  +I  LC +         F QM
Sbjct: 242 DEALSLLVKMKDD---------------NCCPNVRTYTVLIDALCGSGQKSEAMNLFKQM 286

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
              G  PD   Y ++ +       + E       M                         
Sbjct: 287 SESGIKPDDCMYTVLIQSFCSGDTLDEASGLLEHM------------------------- 321

Query: 413 EIAIEIWNYILENGILPLEASANELLVGL 441
                     LENG++P   + N L+ G 
Sbjct: 322 ----------LENGLMPNVITYNALIKGF 340


>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
 gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
 gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 634

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 88/404 (21%), Positives = 174/404 (43%), Gaps = 48/404 (11%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N++++   +  +       + ++MK     S+ T +S+ + YC   +  +AV   D 
Sbjct: 121 YTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQ 180

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEG 231
           M   G   D +   +L+  +    N+ S A+  ++R V++   P+  ++ +++ G  K G
Sbjct: 181 MVEMGYRPDTITFTTLIHGLFLH-NKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRG 239

Query: 232 NVEEANKTFGEM-VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE------- 283
           + + A     +M   + E +   V+ + T + +L + + VD+AL   + M+ +       
Sbjct: 240 DTDLALNLLNKMEAAKIEAD---VVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVV 296

Query: 284 ------NCF----------------------PTLKFFSNALDILVKLNDSTHAVQLWDIM 315
                 +C                       P L  F+  +D  VK      A +L+D M
Sbjct: 297 TYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDM 356

Query: 316 VGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 375
           +    +  P++  YN+++   C +D +D   + F+ MV    FPD +TYN + +   K+K
Sbjct: 357 IKRSID--PDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSK 414

Query: 376 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 435
           RV +  + F EM         +   T I  L    + + A +++  ++ +G+ P   + +
Sbjct: 415 RVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYS 474

Query: 436 ELLVGLRNLGRLSDVRRFAEEM----LNRRILIYEVTMHKLKKA 475
            LL GL N G+L       + M    +   I IY   +  + KA
Sbjct: 475 ILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKA 518



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/367 (20%), Positives = 158/367 (43%), Gaps = 7/367 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKE-DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++  + K  +F+ + +    M+  + V  L T+  + + +C   +   A+     M 
Sbjct: 88  FNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMM 147

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNV 233
             G E  +V ++SLL+  C  + + S A+  ++++ ++   PD  +F  L+ G       
Sbjct: 148 KLGYEPSIVTLSSLLNGYCHGK-RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKA 206

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            EA      MV+R    P +++ Y   +  L +    D AL  L  M+       +  F+
Sbjct: 207 SEAVALVDRMVQR-GCQP-NLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFN 264

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +D L K      A+ L+  M   G  + PN++ Y+++I  LC+     +  +    M+
Sbjct: 265 TIIDSLCKYRHVDDALNLFKEMETKG--IRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 322

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
                P+ +T+N + +  +K  +  E EK + +MIK    P      + +      D  +
Sbjct: 323 EKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLD 382

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 473
            A +++ +++     P   + N L+ G     R+ D      EM +R ++   VT   L 
Sbjct: 383 KAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 442

Query: 474 KAFYNES 480
           +  +++ 
Sbjct: 443 QGLFHDG 449



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/382 (21%), Positives = 156/382 (40%), Gaps = 37/382 (9%)

Query: 92  YDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPT 149
           ++  S AV    R   RG + +   + ++V+ L K G  +   N +  M+   +   +  
Sbjct: 203 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVI 262

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F +I DS C     D+A+  F  M   G+  +VV  +SL+S +C     +  +    + +
Sbjct: 263 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 322

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER------FEWNP------------ 251
           +K ++P+  +F  L++ + KEG   EA K + +M++R      F +N             
Sbjct: 323 EKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLD 382

Query: 252 ---------------EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
                            V+ Y T +    + K+V++  +  R M           ++  +
Sbjct: 383 KAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 442

Query: 297 DILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG 356
             L    D  +A +++  MV  G  + P+++ Y+ ++  LCNN  ++     FD M    
Sbjct: 443 QGLFHDGDCDNAQKVFKQMVSDG--VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSE 500

Query: 357 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 416
              D   Y  + E + K  +V +    F  +     +P  +   T I+ L      + A 
Sbjct: 501 IKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAY 560

Query: 417 EIWNYILENGILPLEASANELL 438
            +   + E+G LP   + N L+
Sbjct: 561 ALLKKMKEDGPLPNSGTYNTLI 582



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 73/337 (21%), Positives = 145/337 (43%), Gaps = 6/337 (1%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  F  +  +     K+D  +   + M    +   +   N L++  CR+ +Q S AL  
Sbjct: 84  SIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRR-SQISLALAL 142

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L ++ K+  +P   + + LL G+     + +A     +MVE   + P+  + + T +  L
Sbjct: 143 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVE-MGYRPD-TITFTTLIHGL 200

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
               +  EA+  +  M    C P L  +   ++ L K  D+  A+ L + M      +  
Sbjct: 201 FLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAA--KIEA 258

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           +++++N +I  LC    VD+    F +M   G  P+ +TY+ +  CL    R  +  +  
Sbjct: 259 DVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLL 318

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
            +MI+ +  P  +     I   +   +   A ++++ +++  I P   + N L+ G    
Sbjct: 319 SDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMH 378

Query: 445 GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
            RL   ++  E M+++      VT + L K F    R
Sbjct: 379 DRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKR 415



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 63/308 (20%), Positives = 128/308 (41%), Gaps = 25/308 (8%)

Query: 96  SSAVDFFRWAGRGQRLSPY----------AWNLMVDVLGKNGRF---EQMWNAV--RVMK 140
           S    + RW+   Q LS             +N ++D   K G+F   E++++ +  R + 
Sbjct: 303 SCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSID 362

Query: 141 EDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS 200
            D    + T+ S+ + +C   + D+A   F+ M       DVV  N+L+   C+ +    
Sbjct: 363 PD----IFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVED 418

Query: 201 RALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF 260
               F     + +  D  ++  L++G   +G+ + A K F +MV   +  P  ++ Y   
Sbjct: 419 GTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVS--DGVPPDIMTYSIL 476

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF 320
           L  L    ++++AL+    M+       +  ++  ++ + K          WD+   +  
Sbjct: 477 LDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDG---WDLFCSLSL 533

Query: 321 -NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
             + PN++ YN +I  LC+   +   +    +M   G  P+S TYN +    +++     
Sbjct: 534 KGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAA 593

Query: 380 VEKFFHEM 387
             +   EM
Sbjct: 594 SAELIREM 601


>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 125/276 (45%), Gaps = 6/276 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N++VD   K+G+ ++      +M + G+  ++ T+ S+ D YC   + ++A      
Sbjct: 268 YTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYT 327

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           MS  GV  D+ + N L+   C+ +        F     K + PD  ++  L++G  K G 
Sbjct: 328 MSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGK 387

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +  A K   EM +R    P  ++ Y + L  L +  QVD+A+  L  +K +   P +  +
Sbjct: 388 ISYALKLVDEMHDR--GVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTY 445

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  +D L K      A  +++ ++  G+N+  N   Y  +I   CN    D       +M
Sbjct: 446 TILIDGLCKGGRLEDAHNIFEDLLVKGYNITVN--TYTVMIHGFCNKGLFDEALALLSKM 503

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
             +   PD++TY +I   L       + EK   EMI
Sbjct: 504 KDNSCIPDAVTYEIIIRSLFDKDENDKAEK-LREMI 538



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 87/385 (22%), Positives = 166/385 (43%), Gaps = 51/385 (13%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT---FASIFDSYCGAGKYD 164
           G +L    +  ++  L K G      + +R  + DG L  P    +++I D  C     +
Sbjct: 157 GFQLDQVGYGTLIHGLCKVGETRAALDLLR--RVDGNLVQPNVVMYSTIIDGMCKDKHVN 214

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAIL 223
           +A   +  M   G+  +VV  ++L+S       Q   A++  N+ + + + PD  +F IL
Sbjct: 215 DAFDLYSEMVSKGISPNVVTYSALISGF-FTVGQLKDAIDLFNKMILENIKPDVYTFNIL 273

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           ++G+ K+G ++E    F  M++  +    +V+ Y + +      K+V++A   L  M   
Sbjct: 274 VDGFCKDGKMKEGKTVFAMMMK--QGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQR 331

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
              P ++ ++  +D   K+     A+ L+  M     +++P+++ YN++I  LC    + 
Sbjct: 332 GVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHK--HIIPDVVTYNSLIDGLCKLGKIS 389

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
              +  D+M   G  PD +TY+ I + L KN   H+V+K                     
Sbjct: 390 YALKLVDEMHDRGVPPDIITYSSILDALCKN---HQVDK--------------------- 425

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML----N 459
                      AI +   + + GI P   +   L+ GL   GRL D     E++L    N
Sbjct: 426 -----------AIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYN 474

Query: 460 RRILIYEVTMHKL-KKAFYNESRSM 483
             +  Y V +H    K  ++E+ ++
Sbjct: 475 ITVNTYTVMIHGFCNKGLFDEALAL 499



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 117/269 (43%), Gaps = 8/269 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC--RQENQTSRALEFL 206
           TF  + D +C  GK  E    F +M   G++ +VV   SL+   C  ++ N+    L  +
Sbjct: 269 TFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTM 328

Query: 207 NRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
           ++  + V+PD  S+ IL++G+ K   V+EA   F EM  +    P+ V+ Y + +  L +
Sbjct: 329 SQ--RGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHK-HIIPD-VVTYNSLIDGLCK 384

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNL 326
             ++  ALK +  M      P +  +S+ LD L K +    A+ L   +   G  + PN+
Sbjct: 385 LGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQG--IRPNM 442

Query: 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 386
             Y  +I  LC    +++    F+ ++  G      TY ++           E      +
Sbjct: 443 YTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSK 502

Query: 387 MIKNEWQPTPLNCATAITMLLDADEPEIA 415
           M  N   P  +     I  L D DE + A
Sbjct: 503 MKDNSCIPDAVTYEIIIRSLFDKDENDKA 531



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 49/237 (20%), Positives = 89/237 (37%), Gaps = 27/237 (11%)

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
           +    +V +A   F  ++ +    P   + +   L +L++ K     L   + M+ E   
Sbjct: 51  FHNNNDVVDAFSLFSRLLRQNPTPP--AIEFNKILGSLVKSKHYHTVLSLSQQMEFEGIN 108

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346
           P L  F              H  QL      +G++  PN I +  +I  LC    +    
Sbjct: 109 PVLFHFQ-------------HPHQL------MGYH--PNTITFTTLIKGLCLKGQIHQAL 147

Query: 347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406
            F D +V  G   D + Y  +   L K             +  N  QP  +  +T I  +
Sbjct: 148 LFHDNVVAMGFQLDQVGYGTLIHGLCKVGETRAALDLLRRVDGNLVQPNVVMYSTIIDGM 207

Query: 407 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
                   A ++++ ++  GI P   + + L+ G   +G+L D    A ++ N+ IL
Sbjct: 208 CKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKD----AIDLFNKMIL 260


>gi|222637660|gb|EEE67792.1| hypothetical protein OsJ_25528 [Oryza sativa Japonica Group]
          Length = 475

 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 87/382 (22%), Positives = 167/382 (43%), Gaps = 21/382 (5%)

Query: 94  SPSSAVDFFRWAGR--------------GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM 139
           S S  VD +  +GR              G +++   +N ++D   +    +++   ++VM
Sbjct: 69  SASVVVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVM 128

Query: 140 KEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198
           + +G+  ++ T+  + D    A    +    F+ M    +  DV   +S+++A CR  N 
Sbjct: 129 ENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGN- 187

Query: 199 TSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
             RA E  +  V   ++P+  ++  L+ G+ K G +E A     +M  R     +  + +
Sbjct: 188 VRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQ--IVF 245

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317
            T +    R   VD+AL+   +M+       +  ++     L + N    A  L  IM+ 
Sbjct: 246 NTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIE 305

Query: 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
            G  + PN + Y  +I + CN  D+    R F +M  +GA P  +TYN++ +  IK   +
Sbjct: 306 KG--VRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSI 363

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 437
            E E+F +EM K    P   + A  +       + ++A+ ++  + + G  P   +   L
Sbjct: 364 REAERFKNEMEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTAL 423

Query: 438 LVGLRNLGRLSDVRRFAEEMLN 459
           + GL   GR  +  +  + ML 
Sbjct: 424 ISGLAKEGRSEEAFQLYDNMLG 445



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 120/278 (43%), Gaps = 7/278 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCG 159
           F    G G   + + +  +++   K G+ E     V  M+  GV ++   F ++ D YC 
Sbjct: 195 FDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCR 254

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGD 218
               D+A+    +M   G+E DV   N+L   + R+ N+   A   L   ++K V P+  
Sbjct: 255 KNMVDKALEIKMIMEKMGIELDVYTYNTLACGL-RRANRMDEAKNLLRIMIEKGVRPNHV 313

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           S+  L+     EG++ EA + F EM          ++ Y   +   I+   + EA +F  
Sbjct: 314 SYTTLISIHCNEGDMVEARRLFREMAG--NGAEPSLVTYNVMMDGYIKKGSIREAERFKN 371

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            M+ +   P +  ++  +           A++L++ M   G    PNL+ Y A+I  L  
Sbjct: 372 EMEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSK--PNLVAYTALISGLAK 429

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
               +  F+ +D M+  G  PD   Y+ +   L  +K+
Sbjct: 430 EGRSEEAFQLYDNMLGDGLTPDDALYSALVGSLHTDKK 467



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 114/282 (40%), Gaps = 44/282 (15%)

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH-----VLAYETFLITLIRGKQVDEA 273
           S +++++G+ K G V  A +   EM       P H      L Y + L    R K  D  
Sbjct: 69  SASVVVDGYCKSGRVAHARQLLDEM-------PRHGVKVNALCYNSLLDAYTREKDDDRV 121

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
            + L+VM+ E   PT+  ++  +D L    D T    +++ M     NL  ++  Y++VI
Sbjct: 122 AEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKS--KNLSGDVYFYSSVI 179

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIF------------ECLIKNKRVHEV- 380
              C   +V      FD+ V +G  P+  TY  +             E L+ + +V  V 
Sbjct: 180 NAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVG 239

Query: 381 --EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 438
             +  F+ MI    +   ++ A  I M+++  +  I ++++ Y             N L 
Sbjct: 240 INQIVFNTMIDGYCRKNMVDKALEIKMIME--KMGIELDVYTY-------------NTLA 284

Query: 439 VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 480
            GLR   R+ + +     M+ + +    V+   L     NE 
Sbjct: 285 CGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTTLISIHCNEG 326


>gi|125559559|gb|EAZ05095.1| hypothetical protein OsI_27286 [Oryza sativa Indica Group]
          Length = 551

 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 87/382 (22%), Positives = 166/382 (43%), Gaps = 21/382 (5%)

Query: 94  SPSSAVDFFRWAGR--------------GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM 139
           S S  VD +  +GR              G +++   +N ++D   +    +++   ++VM
Sbjct: 145 SASVVVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVM 204

Query: 140 KEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198
           + +G+  ++ T+  + D    A    +    F+ M    +  DV   +S+++A CR  N 
Sbjct: 205 ENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGN- 263

Query: 199 TSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
             RA E  +  V   ++P+  ++  L+ G+ K G +E A     +M  R     +  + +
Sbjct: 264 VRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQ--IVF 321

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317
            T +    R   VD+AL+   +M+       +  ++     L + N    A  L  IM+ 
Sbjct: 322 NTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIE 381

Query: 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
            G  + PN + Y  +I + CN  D+    R F +M  +GA P  +TYN++ +  IK   +
Sbjct: 382 KG--VRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSI 439

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 437
            E E+F  EM K    P   + A  +       + ++A+ ++  + + G  P   +   L
Sbjct: 440 REAERFKKEMEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTAL 499

Query: 438 LVGLRNLGRLSDVRRFAEEMLN 459
           + GL   GR  +  +  + ML 
Sbjct: 500 ISGLAKEGRSEEAFQLYDNMLG 521



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 121/278 (43%), Gaps = 7/278 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCG 159
           F    G G   + + +  +++   K G+ E     V  M+  GV ++   F ++ D YC 
Sbjct: 271 FDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCR 330

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGD 218
               D+A+    +M   G+E DV   N+L   + R+ N+   A   L   ++K V P+  
Sbjct: 331 KNMVDKALEIKMIMEKMGIELDVYTYNTLACGL-RRANRMDEAKNLLRIMIEKGVRPNHV 389

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           S+  L+     EG++ EA + F EM          ++ Y   +   I+   + EA +F +
Sbjct: 390 SYTTLISIHCNEGDMVEARRLFREMAG--NGAEPSLVTYNVMMDGYIKKGSIREAERFKK 447

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            M+ +   P +  ++  +           A++L++ M   G    PNL+ Y A+I  L  
Sbjct: 448 EMEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSK--PNLVAYTALISGLAK 505

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
               +  F+ +D M+  G  PD   Y+ +   L  +K+
Sbjct: 506 EGRSEEAFQLYDNMLGDGLTPDDALYSALVGSLHTDKK 543



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 114/282 (40%), Gaps = 44/282 (15%)

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH-----VLAYETFLITLIRGKQVDEA 273
           S +++++G+ K G V  A +   EM       P H      L Y + L    R K  D  
Sbjct: 145 SASVVVDGYCKSGRVAHARQLLDEM-------PRHGVKVNALCYNSLLDAYTREKDDDRV 197

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
            + L+VM+ E   PT+  ++  +D L    D T    +++ M     NL  ++  Y++VI
Sbjct: 198 AEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSK--NLSGDVYFYSSVI 255

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIF------------ECLIKNKRVHEV- 380
              C   +V      FD+ V +G  P+  TY  +             E L+ + +V  V 
Sbjct: 256 NAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVG 315

Query: 381 --EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 438
             +  F+ MI    +   ++ A  I M+++  +  I ++++ Y             N L 
Sbjct: 316 INQIVFNTMIDGYCRKNMVDKALEIKMIME--KMGIELDVYTY-------------NTLA 360

Query: 439 VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 480
            GLR   R+ + +     M+ + +    V+   L     NE 
Sbjct: 361 CGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTTLISIHCNEG 402


>gi|145360025|ref|NP_179305.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122223754|sp|Q0WPZ6.1|PP158_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g17140
 gi|110737729|dbj|BAF00803.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251496|gb|AEC06590.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 874

 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 98/439 (22%), Positives = 191/439 (43%), Gaps = 42/439 (9%)

Query: 96  SSAVD-----FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPT 149
           SS VD     F     +G + + + + ++V    K G  ++    +  M+  GVL +   
Sbjct: 160 SSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVI 219

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF---- 205
           + +I  S+C  G+ D++    + M   G+  D+V  NS +SA+C++      +  F    
Sbjct: 220 YNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDME 279

Query: 206 LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
           L+    +  P+  ++ ++L+G+ K G +E+A   F  + E  +     + +Y  +L  L+
Sbjct: 280 LDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDL--ASLQSYNIWLQGLV 337

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN 325
           R  +  EA   L+ M  +   P++  ++  +D L KL   + A  +  +M   G  + P+
Sbjct: 338 RHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNG--VCPD 395

Query: 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 385
            + Y  ++   C+   VD       +M+ +   P++ T N++   L K  R+ E E+   
Sbjct: 396 AVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLR 455

Query: 386 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW----------------NYI------- 422
           +M +  +    + C   +  L  + E + AIEI                 +YI       
Sbjct: 456 KMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSL 515

Query: 423 LENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVTMHKLKKAFYN 478
           +EN  LP   + + LL GL   GR ++ +    EM+  ++    + Y + +H   K    
Sbjct: 516 IENNCLPDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQG-K 574

Query: 479 ESRSMRDIFDSLERRCKTS 497
            S + R + D  ++ C  S
Sbjct: 575 ISSAFRVLKDMEKKGCHKS 593



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 77/326 (23%), Positives = 130/326 (39%), Gaps = 21/326 (6%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G   S Y++N+++D L K G        V +MK +GV     T+  +   YC  GK D 
Sbjct: 355 KGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDA 414

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILL 224
           A      M  +    +    N LL ++ +   + S A E L ++ +K    D  +  I++
Sbjct: 415 AKSLLQEMMRNNCLPNAYTCNILLHSLWKM-GRISEAEELLRKMNEKGYGLDTVTCNIIV 473

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLA-YETFLITLIRGKQVDEALKFLRVMKGE 283
           +G    G +++A     E+V+    +    L       I L+    ++            
Sbjct: 474 DGLCGSGELDKAI----EIVKGMRVHGSAALGNLGNSYIGLVDDSLIEN----------- 518

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
           NC P L  +S  L+ L K      A  L+  M  +G  L P+ + YN  I   C    + 
Sbjct: 519 NCLPDLITYSTLLNGLCKAGRFAEAKNLFAEM--MGEKLQPDSVAYNIFIHHFCKQGKIS 576

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
           + FR    M   G      TYN +   L    ++ E+     EM +    P      TAI
Sbjct: 577 SAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAI 636

Query: 404 TMLLDADEPEIAIEIWNYILENGILP 429
             L + ++ E A  + + +++  I P
Sbjct: 637 QYLCEGEKVEDATNLLDEMMQKNIAP 662



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 79/368 (21%), Positives = 144/368 (39%), Gaps = 12/368 (3%)

Query: 99  VDFFRWAGRGQRL-----SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFAS 152
           V+F  W  +   L       Y +NL++  L  +   +        M E G      TF  
Sbjct: 128 VEFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGI 187

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ-ENQTSRALEFLNRVKK 211
           +   YC AG  D+ +   + M   GV  + V  N+++S+ CR+  N  S  +    R + 
Sbjct: 188 LVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEG 247

Query: 212 IVDPDGDSFAILLEGWEKEGNVEEANKTFGEM-VERFEWNPE-HVLAYETFLITLIRGKQ 269
           +V PD  +F   +    KEG V +A++ F +M ++ +   P  + + Y   L    +   
Sbjct: 248 LV-PDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGL 306

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY 329
           +++A      ++  +   +L+ ++  L  LV+      A  +   M   G    P++  Y
Sbjct: 307 LEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIG--PSIYSY 364

Query: 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389
           N ++  LC    + +       M  +G  PD++TY  +        +V   +    EM++
Sbjct: 365 NILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMR 424

Query: 390 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 449
           N   P    C   +  L        A E+   + E G      + N ++ GL   G L  
Sbjct: 425 NNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDK 484

Query: 450 VRRFAEEM 457
                + M
Sbjct: 485 AIEIVKGM 492



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/309 (20%), Positives = 120/309 (38%), Gaps = 52/309 (16%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSF 170
           + Y  N+++  L K GR  +    +R M E G  L   T   I D  CG+G+ D+A+   
Sbjct: 430 NAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIV 489

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
             M +HG            SA       +   L   + ++    PD  +++ LL G  K 
Sbjct: 490 KGMRVHG------------SAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKA 537

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           G   EA   F EM+   +  P+ V AY  F+    +  ++  A + L+ M+ + C  +L+
Sbjct: 538 GRFAEAKNLFAEMMGE-KLQPDSV-AYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLE 595

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
            +++                   +++G+G                    + +  +    D
Sbjct: 596 TYNS-------------------LILGLGIK------------------NQIFEIHGLMD 618

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
           +M   G  P+  TYN   + L + ++V +      EM++    P   +    I       
Sbjct: 619 EMKEKGISPNICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFCKVP 678

Query: 411 EPEIAIEIW 419
           + ++A E++
Sbjct: 679 DFDMAQEVF 687



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/314 (20%), Positives = 126/314 (40%), Gaps = 10/314 (3%)

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M + G+       N L+ A+C      +    F    +K   P+  +F IL+ G+ K G 
Sbjct: 138 MVLCGIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGL 197

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
            ++  +    M E F   P  V+ Y T + +  R  + D++ K +  M+ E   P +  F
Sbjct: 198 TDKGLELLNAM-ESFGVLPNKVI-YNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTF 255

Query: 293 SNALDILVKLNDSTHAVQLWDIM-----VGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFR 347
           ++ +  L K      A +++  M     +G+     PN I YN ++   C    +++   
Sbjct: 256 NSRISALCKEGKVLDASRIFSDMELDEYLGLP---RPNSITYNLMLKGFCKVGLLEDAKT 312

Query: 348 FFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 407
            F+ +  +       +YN+  + L+++ +  E E    +M      P+  +    +  L 
Sbjct: 313 LFESIRENDDLASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLC 372

Query: 408 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEV 467
                  A  I   +  NG+ P   +   LL G  ++G++   +   +EM+    L    
Sbjct: 373 KLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAY 432

Query: 468 TMHKLKKAFYNESR 481
           T + L  + +   R
Sbjct: 433 TCNILLHSLWKMGR 446



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 63/315 (20%), Positives = 123/315 (39%), Gaps = 31/315 (9%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP------------------ 148
           +G  L     N++VD L  +G  ++    V+ M+  G  +L                   
Sbjct: 460 KGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENN 519

Query: 149 ------TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRA 202
                 T++++ +  C AG++ EA   F  M    ++ D VA N  +   C+Q   +S  
Sbjct: 520 CLPDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAF 579

Query: 203 LEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI 262
               +  KK      +++  L+ G   +  + E +    EM E+   +P ++  Y T + 
Sbjct: 580 RVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEK-GISP-NICTYNTAIQ 637

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI-GFN 321
            L  G++V++A   L  M  +N  P +  F   ++   K+ D   A ++++  V I G  
Sbjct: 638 YLCEGEKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFCKVPDFDMAQEVFETAVSICGQK 697

Query: 322 LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 381
                +M+N ++        +       + ++  G    +  Y  + E L K   +    
Sbjct: 698 EGLYSLMFNELLAA----GQLLKATELLEAVLDRGFELGTFLYKDLVESLCKKDELEVAS 753

Query: 382 KFFHEMIKNEWQPTP 396
              H+MI   +   P
Sbjct: 754 GILHKMIDRGYGFDP 768



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 98/247 (39%), Gaps = 8/247 (3%)

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           + +LLE   KE  VE  +  + +MV            +   +  L     VD A +    
Sbjct: 115 YNLLLESCIKERRVEFVSWLYKDMV--LCGIAPQTYTFNLLIRALCDSSCVDAARELFDE 172

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
           M  + C P    F   +    K   +   ++L + M    F ++PN ++YN ++   C  
Sbjct: 173 MPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAMES--FGVLPNKVIYNTIVSSFCRE 230

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
              D+  +  ++M   G  PD +T+N     L K  +V +  + F +M  +E+   P   
Sbjct: 231 GRNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPN 290

Query: 400 ATAITMLLDA----DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 455
           +    ++L         E A  ++  I EN  L    S N  L GL   G+  +     +
Sbjct: 291 SITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEAETVLK 350

Query: 456 EMLNRRI 462
           +M ++ I
Sbjct: 351 QMTDKGI 357



 Score = 45.8 bits (107), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 36/170 (21%), Positives = 68/170 (40%), Gaps = 2/170 (1%)

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           P++ +YN ++        V+ V   +  MV  G  P + T+N++   L  +  V    + 
Sbjct: 110 PSVYLYNLLLESCIKERRVEFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDAAREL 169

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
           F EM +   +P        +     A   +  +E+ N +   G+LP +   N ++     
Sbjct: 170 FDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSFCR 229

Query: 444 LGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSM--RDIFDSLE 491
            GR  D  +  E+M    ++   VT +    A   E + +    IF  +E
Sbjct: 230 EGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDME 279


>gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Brachypodium distachyon]
          Length = 686

 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 75/366 (20%), Positives = 163/366 (44%), Gaps = 11/366 (3%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT-FASIFDSYCGAGKYDE 165
           +G ++  Y  +++++ L K+G+  +    ++ +   G+L     + ++ + YC  G  + 
Sbjct: 322 KGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDLEG 381

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A   F  M    +  D +  N+L++ + + E  T      +   K  V+P  ++F  L++
Sbjct: 382 AFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLID 441

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
            + + G +E+      +M E+    P +V++Y + +    +  ++ EA+  L  M  ++ 
Sbjct: 442 AYGRAGQLEKCFIILSDMQEK-GLKP-NVVSYGSIVNAFCKNGKILEAVAILDDMFIKDV 499

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P  + ++  +D  ++   +  A  L + M   G  + P+++ YN +I  LC    +   
Sbjct: 500 LPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSSG--VPPSIVTYNLLIKGLCKQSQISEA 557

Query: 346 FRFFDQMVFHGAFPDSLTYN-MIFECLIKNK--RVHEVEKFFHEMIKNEWQPTPLNCATA 402
               D +  +G  PD ++YN +I  C  ++   R  E+EK   EM K   +P+P      
Sbjct: 558 EELLDSLRNYGLAPDVISYNTLISACCYRSNTDRALELEK---EMWKCGIKPSPRTYRML 614

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
            + L  A        ++  +L+  ++P     N ++      G  S V    +EM ++ I
Sbjct: 615 FSSLGGAGRVHEMENLYQQMLDKDVVPCSGIYNIMVDAYAKCGEESKVEALRKEMSDKGI 674

Query: 463 LIYEVT 468
            + + T
Sbjct: 675 AVGDYT 680



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 77/367 (20%), Positives = 155/367 (42%), Gaps = 11/367 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + ++++ D   + G  + M +      + GV +   T + + +  C  GK  +A      
Sbjct: 294 FTYSILFDGHSRTGDSQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQT 353

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEG 231
           +   G+ Q  V  N+L++  C Q      A     ++K +++ PD  ++  L+ G  K  
Sbjct: 354 LVNSGLLQTTVIYNTLINGYC-QIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVE 412

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            + EA+    EM E+   NP  V  + T +    R  Q+++    L  M+ +   P +  
Sbjct: 413 RITEAHDLVIEM-EKNGVNPS-VETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVS 470

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           + + ++   K      AV + D M     +++P   +YNA+I         D  F   ++
Sbjct: 471 YGSIVNAFCKNGKILEAVAILDDM--FIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEK 528

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M   G  P  +TYN++ + L K  ++ E E+    +      P  ++  T I+       
Sbjct: 529 MKSSGVPPSIVTYNLLIKGLCKQSQISEAEELLDSLRNYGLAPDVISYNTLISACCYRSN 588

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL----IYEV 467
            + A+E+   + + GI P   +   L   L   GR+ ++    ++ML++ ++    IY +
Sbjct: 589 TDRALELEKEMWKCGIKPSPRTYRMLFSSLGGAGRVHEMENLYQQMLDKDVVPCSGIYNI 648

Query: 468 TMHKLKK 474
            +    K
Sbjct: 649 MVDAYAK 655



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 79/369 (21%), Positives = 142/369 (38%), Gaps = 42/369 (11%)

Query: 98  AVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           AV   R  G     +P  +++N+++  L K G           M E  V+ +  T+ ++ 
Sbjct: 171 AVGMLRRMGCDGAPAPNAFSYNVVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMI 230

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD 214
           D +   G  +     +  M  HG++ +V+  N LLS +CR       A        + + 
Sbjct: 231 DGHIKKGDLESGFRLWSQMLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMV 290

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           PDG +++IL +G  + G+ +     F E V++       + AY   ++       ++   
Sbjct: 291 PDGFTYSILFDGHSRTGDSQTMLSLFEESVKK----GVKIGAYTCSIL-------LNGLC 339

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
           K  ++ K E    TL                            +   L+   ++YN +I 
Sbjct: 340 KDGKISKAEEVLQTL----------------------------VNSGLLQTTVIYNTLIN 371

Query: 335 LLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
             C   D++  F  F QM      PD +TYN +   L K +R+ E      EM KN   P
Sbjct: 372 GYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLVIEMEKNGVNP 431

Query: 395 TPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 454
           +     T I     A + E    I + + E G+ P   S   ++      G++ +     
Sbjct: 432 SVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAIL 491

Query: 455 EEMLNRRIL 463
           ++M  + +L
Sbjct: 492 DDMFIKDVL 500



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/220 (21%), Positives = 88/220 (40%), Gaps = 2/220 (0%)

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
           +  +Y   +  L +     +A+K    M  +   P    ++  +D  +K  D     +LW
Sbjct: 187 NAFSYNVVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLW 246

Query: 313 DIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 372
             M+  G  L PN+I YN ++  LC    +       D+M      PD  TY+++F+   
Sbjct: 247 SQMLRHG--LKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHS 304

Query: 373 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 432
           +      +   F E +K   +     C+  +  L    +   A E+   ++ +G+L    
Sbjct: 305 RTGDSQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTV 364

Query: 433 SANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
             N L+ G   +G L       ++M +R I    +T + L
Sbjct: 365 IYNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNAL 404



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 1/141 (0%)

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGA-FPDSLTYNMIFECLIKNKRVHEVEK 382
           P+   +N  +       D+D       +M   GA  P++ +YN++   L K     +  K
Sbjct: 150 PDTFTWNKAVQACVVAGDLDEAVGMLRRMGCDGAPAPNAFSYNVVIAGLWKAGTDCDAVK 209

Query: 383 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 442
            F EM +    P  +   T I   +   + E    +W+ +L +G+ P   + N LL GL 
Sbjct: 210 LFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQMLRHGLKPNVITYNVLLSGLC 269

Query: 443 NLGRLSDVRRFAEEMLNRRIL 463
             GR+ +     +EM +R+++
Sbjct: 270 RAGRMGETAAVLDEMASRKMV 290


>gi|224131362|ref|XP_002328520.1| predicted protein [Populus trichocarpa]
 gi|222838235|gb|EEE76600.1| predicted protein [Populus trichocarpa]
          Length = 501

 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 139/312 (44%), Gaps = 15/312 (4%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKE----DGVLSLPTFASIFDSYCGAGKYDEAVMSF 170
            +  +++ L   GR ++   AV +  E    D + +  TF  + D  C  G   EA   F
Sbjct: 158 TFTTLINGLCNEGRIKE---AVELFNEMAGRDAMPNTVTFTILVDVLCKKGMVSEARCVF 214

Query: 171 DVMSMHGVEQDVVAVNSLLSAIC-RQE-NQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
           + M+  GVE ++   N+L++  C R E N  S+  E +  V K   P   S++IL+ G+ 
Sbjct: 215 ETMTEKGVEPNIYTYNALMNGYCLRLEMNDASKVFEIM--VGKGCAPSVHSYSILINGYC 272

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           K   ++EA     +M E+ E  P  V  Y T +  L     + EA +  + M      P 
Sbjct: 273 KSRRIDEAKALLTQMSEK-ELIPNTV-TYNTLMQGLCHASSLLEAQELFKKMCSSGMLPN 330

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
           L+ +S  LD L K      A++L   M      L P++++YN +I  +     ++     
Sbjct: 331 LRTYSILLDGLCKHGHLEEALKLLTSMQ--ERKLEPDIVLYNILIQGMFIAGKLEVAKEL 388

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
           F ++  +G  P   TYN++ + L+K     E  K F +M  + + P   +    I   L 
Sbjct: 389 FSKLFANGIRPSVRTYNIMIKGLLKEGLSDEAYKLFRKMEDDGFLPDSCSYNVIIQGFLQ 448

Query: 409 ADEPEIAIEIWN 420
             +P  AI++ +
Sbjct: 449 NQDPSTAIQLID 460



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 135/303 (44%), Gaps = 9/303 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T   + +S C       AV     M   G++ D V   +L++ +C  E +   A+E  N 
Sbjct: 123 TLNILINSLCRLSHIHFAVSVLSKMFKLGIQPDSVTFTTLINGLC-NEGRIKEAVELFNE 181

Query: 209 VK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIR 266
           +  +   P+  +F IL++   K+G V EA   F  M E+  E N   +  Y   +     
Sbjct: 182 MAGRDAMPNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPN---IYTYNALMNGYCL 238

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNL 326
             ++++A K   +M G+ C P++  +S  ++   K      A  L   M      L+PN 
Sbjct: 239 RLEMNDASKVFEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEK--ELIPNT 296

Query: 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 386
           + YN ++  LC+   +      F +M   G  P+  TY+++ + L K+  + E  K    
Sbjct: 297 VTYNTLMQGLCHASSLLEAQELFKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTS 356

Query: 387 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 446
           M + + +P  +     I  +  A + E+A E+++ +  NGI P   + N ++ GL   G 
Sbjct: 357 MQERKLEPDIVLYNILIQGMFIAGKLEVAKELFSKLFANGIRPSVRTYNIMIKGLLKEG- 415

Query: 447 LSD 449
           LSD
Sbjct: 416 LSD 418



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/352 (20%), Positives = 151/352 (42%), Gaps = 11/352 (3%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP----TFASIFDSYCGAGKYDEAVMS 169
           Y  N++++ L    R   +  AV V+ +   L +     TF ++ +  C  G+  EAV  
Sbjct: 122 YTLNILINSLC---RLSHIHFAVSVLSKMFKLGIQPDSVTFTTLINGLCNEGRIKEAVEL 178

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK 229
           F+ M+      + V    L+  +C++   +     F    +K V+P+  ++  L+ G+  
Sbjct: 179 FNEMAGRDAMPNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCL 238

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
              + +A+K F  MV +       V +Y   +    + +++DEA   L  M  +   P  
Sbjct: 239 RLEMNDASKVFEIMVGK--GCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNT 296

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
             ++  +  L   +    A +L+  M   G  ++PNL  Y+ ++  LC +  ++   +  
Sbjct: 297 VTYNTLMQGLCHASSLLEAQELFKKMCSSG--MLPNLRTYSILLDGLCKHGHLEEALKLL 354

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 409
             M      PD + YN++ + +    ++   ++ F ++  N  +P+       I  LL  
Sbjct: 355 TSMQERKLEPDIVLYNILIQGMFIAGKLEVAKELFSKLFANGIRPSVRTYNIMIKGLLKE 414

Query: 410 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461
              + A +++  + ++G LP   S N ++ G       S   +  +EM+ RR
Sbjct: 415 GLSDEAYKLFRKMEDDGFLPDSCSYNVIIQGFLQNQDPSTAIQLIDEMVGRR 466



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 72/333 (21%), Positives = 139/333 (41%), Gaps = 48/333 (14%)

Query: 148 PTFASI---FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204
           P+F  +     S     +Y   V   + M + GV  +   +N L++++CR  +    A+ 
Sbjct: 84  PSFVELGKFLGSIAKKKQYSTVVSLCNQMDLFGVAHNDYTLNILINSLCRL-SHIHFAVS 142

Query: 205 FLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT 263
            L+++ K+ + PD  +F  L+ G   EG ++EA + F E                     
Sbjct: 143 VLSKMFKLGIQPDSVTFTTLINGLCNEGRIKEAVELFNE--------------------- 181

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLM 323
                           M G +  P    F+  +D+L K    + A  +++ M   G    
Sbjct: 182 ----------------MAGRDAMPNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVE-- 223

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           PN+  YNA++   C   ++++  + F+ MV  G  P   +Y+++     K++R+ E +  
Sbjct: 224 PNIYTYNALMNGYCLRLEMNDASKVFEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKAL 283

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
             +M + E  P  +   T +  L  A     A E++  +  +G+LP   + + LL GL  
Sbjct: 284 LTQMSEKELIPNTVTYNTLMQGLCHASSLLEAQELFKKMCSSGMLPNLRTYSILLDGLCK 343

Query: 444 LGRLSDVRRFAEEMLNRR----ILIYEVTMHKL 472
            G L +  +    M  R+    I++Y + +  +
Sbjct: 344 HGHLEEALKLLTSMQERKLEPDIVLYNILIQGM 376



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 127/313 (40%), Gaps = 49/313 (15%)

Query: 98  AVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL----------- 145
           AV+ F   AGR    +   + ++VDVL K G   +       M E GV            
Sbjct: 175 AVELFNEMAGRDAMPNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMN 234

Query: 146 -------------------------SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQ 180
                                    S+ +++ + + YC + + DEA      MS   +  
Sbjct: 235 GYCLRLEMNDASKVFEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIP 294

Query: 181 DVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD----PDGDSFAILLEGWEKEGNVEEA 236
           + V  N+L+  +C      S  LE     KK+      P+  +++ILL+G  K G++EEA
Sbjct: 295 NTVTYNTLMQGLC----HASSLLEAQELFKKMCSSGMLPNLRTYSILLDGLCKHGHLEEA 350

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
            K    M ER +  P+ VL Y   +  +    +++ A +    +      P+++ ++  +
Sbjct: 351 LKLLTSMQER-KLEPDIVL-YNILIQGMFIAGKLEVAKELFSKLFANGIRPSVRTYNIMI 408

Query: 297 DILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG 356
             L+K   S  A +L+  M   GF  +P+   YN +I     N D     +  D+MV   
Sbjct: 409 KGLLKEGLSDEAYKLFRKMEDDGF--LPDSCSYNVIIQGFLQNQDPSTAIQLIDEMVGRR 466

Query: 357 AFPDSLTYNMIFE 369
              DS T+ M+ +
Sbjct: 467 FSADSSTFKMLLD 479


>gi|308081240|ref|NP_001183570.1| uncharacterized protein LOC100502163 [Zea mays]
 gi|238013140|gb|ACR37605.1| unknown [Zea mays]
          Length = 199

 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 49/102 (48%), Positives = 63/102 (61%), Gaps = 4/102 (3%)

Query: 96  SSAVDFFRWAGR---GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFAS 152
           +S   FFRWAG    G   SPY+WNL VD+LGKN  FE MW+ V+ M    +LSL TFAS
Sbjct: 13  ASRAAFFRWAGHRHLGHEHSPYSWNLFVDILGKNRLFEPMWDTVKSMHSQQLLSLATFAS 72

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194
           +F S   A      + +F  M  +G+ +D  A+NSLLSA+CR
Sbjct: 73  VFSSL-AATPGGSPLKAFMDMPRYGMTRDTAALNSLLSALCR 113


>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
 gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 164/354 (46%), Gaps = 21/354 (5%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKE-DGVLSLP---TFASIFDSYCGAGKYDEAVMSF 170
           ++N +++ L K  R E+   AV ++ E +G    P   T+  + D  C  G+ +EA+   
Sbjct: 12  SYNTIINGLCKEKRLEK---AVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAMRLL 68

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
             M   G+E DVV  ++L+S  C +         F   ++K + P+   ++ L+ G+ K+
Sbjct: 69  GEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFCKK 128

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM--KGENCFPT 288
           G   EA      M ER    P+ V  Y   +  L +  +  +AL    +M  KGE   P+
Sbjct: 129 GLWREATAVLHTMTER-GIQPD-VYTYTCMIGGLCKDGRARKALDLFDLMTEKGEE--PS 184

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
              ++  ++ L K      A ++++ M+  G  L   ++ YN +I  LCNN  +D   + 
Sbjct: 185 TVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRL--EVVSYNTLIMGLCNNGKLDEAMKL 242

Query: 349 FDQMVFHGAF--PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406
           F  ++  G +  PD +T+N + + L K  R+ +  + +  MI+         C   I   
Sbjct: 243 FSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEY 302

Query: 407 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           + +   + A+E+W  + + G++P   + + ++ G   +  L+    FA+ + +R
Sbjct: 303 IKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLN----FAKGLFSR 352



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/327 (22%), Positives = 149/327 (45%), Gaps = 9/327 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG +   Y +  M+  L K+GR  +  +   +M E G   S  T+  + +  C  G   +
Sbjct: 144 RGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGD 203

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV---KKIVDPDGDSFAI 222
           A   F+ M   G   +VV+ N+L+  +C    +   A++  + +      V+PD  +F  
Sbjct: 204 AFKIFETMLEKGKRLEVVSYNTLIMGLCNN-GKLDEAMKLFSSLLEDGNYVEPDVITFNT 262

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           +++G  KEG +++A + +  M+ER  +   ++      +   I+   +D+A++  + +  
Sbjct: 263 VIQGLCKEGRLDKAVEIYDTMIERGSFG--NLFTCHILIGEYIKSGIIDKAMELWKRVHK 320

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
               P+   +S  +D   K++    A  L+  M   G  L P L  YN ++  LC    +
Sbjct: 321 LGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISG--LSPTLFDYNTLMASLCKESSL 378

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
           +   R F +M      PD++++N++ +  +K   +H  ++  ++M +    P     ++ 
Sbjct: 379 EQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSF 438

Query: 403 ITMLLDADEPEIAIEIWNYILENGILP 429
           I  L    + E A   ++ ++ +GI P
Sbjct: 439 INRLSKLGQMEEAKGAFDSMIASGITP 465



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/361 (20%), Positives = 150/361 (41%), Gaps = 40/361 (11%)

Query: 139 MKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           M E G+  ++  ++ + + +C  G + EA      M+  G++ DV     ++  +C+ + 
Sbjct: 106 MLEKGISPNVVVYSCLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCK-DG 164

Query: 198 QTSRALEFLN-RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
           +  +AL+  +   +K  +P   ++ +L+ G  KEG + +A K F  M+E+       V++
Sbjct: 165 RARKALDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEK--GKRLEVVS 222

Query: 257 YETFLITLIRGKQVDEALKFLRVM--KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314
           Y T ++ L    ++DEA+K    +   G    P +  F+  +  L K      AV+++D 
Sbjct: 223 YNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDT 282

Query: 315 MVGIG---------------------------------FNLMPNLIMYNAVIGLLCNNDD 341
           M+  G                                   L+P+   Y+ +I   C    
Sbjct: 283 MIERGSFGNLFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHM 342

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
           ++     F +M   G  P    YN +   L K   + +  + F EM ++  +P  ++   
Sbjct: 343 LNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNI 402

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461
            I   L A +   A E+ N + + G+ P   + +  +  L  LG++ + +   + M+   
Sbjct: 403 MIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQMEEAKGAFDSMIASG 462

Query: 462 I 462
           I
Sbjct: 463 I 463



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 131/283 (46%), Gaps = 8/283 (2%)

Query: 181 DVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKT 239
           D+V+ N++++ +C+ E +  +A++ L  ++    +P+  ++ IL++G  KEG VEEA + 
Sbjct: 9   DIVSYNTIINGLCK-EKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAMRL 67

Query: 240 FGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299
            GEM  + +     V+ Y T +        +D        M  +   P +  +S  ++  
Sbjct: 68  LGEM--KRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGF 125

Query: 300 VKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFP 359
            K      A  +   M   G  + P++  Y  +IG LC +         FD M   G  P
Sbjct: 126 CKKGLWREATAVLHTMTERG--IQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEP 183

Query: 360 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 419
            ++TYN++   L K   + +  K F  M++   +   ++  T I  L +  + + A++++
Sbjct: 184 STVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLF 243

Query: 420 NYILENG--ILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           + +LE+G  + P   + N ++ GL   GRL       + M+ R
Sbjct: 244 SSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIER 286



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 98/228 (42%), Gaps = 2/228 (0%)

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
           +++Y T +  L + K++++A+  L  M+G +C P    +   +D L K      A++L  
Sbjct: 10  IVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAMRLLG 69

Query: 314 IMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 373
            M   G  +  ++++Y+ +I   C+   +D     FD+M+  G  P+ + Y+ +     K
Sbjct: 70  EMKRKGLEV--DVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFCK 127

Query: 374 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 433
                E     H M +   QP        I  L        A+++++ + E G  P   +
Sbjct: 128 KGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVT 187

Query: 434 ANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
            N L+ GL   G + D  +  E ML +   +  V+ + L     N  +
Sbjct: 188 YNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGK 235



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 70/176 (39%), Gaps = 2/176 (1%)

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
            N++P+++ YN +I  LC    ++       +M      P+S TY ++ + L K  RV E
Sbjct: 4   INILPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEE 63

Query: 380 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 439
             +   EM +   +   +  +T I+        +    +++ +LE GI P     + L+ 
Sbjct: 64  AMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLIN 123

Query: 440 GLRNLGRLSDVRRFAEEMLNRRIL--IYEVTMHKLKKAFYNESRSMRDIFDSLERR 493
           G    G   +       M  R I   +Y  T           +R   D+FD +  +
Sbjct: 124 GFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEK 179


>gi|125562731|gb|EAZ08111.1| hypothetical protein OsI_30376 [Oryza sativa Indica Group]
          Length = 794

 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 98/421 (23%), Positives = 181/421 (42%), Gaps = 16/421 (3%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAG-----RGQRLSPYAWNLMVDVLGKNGRFEQMWN 134
           TP  V + L  +    +S +  F ++      R + L  +A +L++ +   +   E M++
Sbjct: 66  TPHAVSDALLCAAIPAASRLRLFLFSALSPRLRSRPLHAHAVSLLLRL--SSHADEAMFD 123

Query: 135 AVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC 193
           A+   +  G+  S   FA++  ++  AG++ +AV +F  M            N++L A+ 
Sbjct: 124 ALADARAAGLPASSSAFAALVAAHSSAGRHADAVQAFSRMDEFQSRPTAFVYNTILKALV 183

Query: 194 RQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
                   AL   NR V     P+  ++ +L++G  K+G   +A K F EM++R      
Sbjct: 184 -DSGVILLALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIM--P 240

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
           +V  Y   L +L    ++DEA++ L  MK + C P    ++  L  L K+     A Q  
Sbjct: 241 NVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRL 300

Query: 313 DIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 372
            ++   GF L   L  Y+ +I  L      D  F ++  M+     PD + Y ++     
Sbjct: 301 VMLQDGGFAL--GLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCA 358

Query: 373 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 432
           +  R+ +   F   M K  + P      T + +L D  + E A  + + +L+N ++    
Sbjct: 359 EAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDST 418

Query: 433 SANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSL 490
           +   ++ GL   G + +  +  +EM         +T + L   FY E R    R +F  +
Sbjct: 419 TQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKM 478

Query: 491 E 491
           E
Sbjct: 479 E 479



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 92/386 (23%), Positives = 156/386 (40%), Gaps = 30/386 (7%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N+++D L K G           M + G++ ++  +  +  S C AGK DEAV     M 
Sbjct: 210 YNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMK 269

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG------DSFAILLEGWE 228
             G   D V  N+ LS +C+      R  E   R+  ++  DG        ++ L++G  
Sbjct: 270 DKGCLPDEVTYNAFLSGLCK----VGRVNEAFQRL--VMLQDGGFALGLKGYSCLIDGLF 323

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           +    +E    +  M+ER   +P+ VL Y   +       ++++AL FL VMK +   P 
Sbjct: 324 QARRFDEGFGYYKTMLER-NISPDVVL-YTIMIRGCAEAGRIEDALSFLDVMKKKGFVPD 381

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
              ++  L +L    D   A  L   M  +  NL+ +      +I  LC    VD   + 
Sbjct: 382 TFCYNTVLKVLCDHGDLERAHTLRSEM--LQNNLVLDSTTQTIMICGLCKRGLVDEAMQI 439

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
           FD+M  HG  P  +TYN + +   +  R+ E    FH+M         L        + D
Sbjct: 440 FDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGNNPSLFLRLTLGANQVRD 499

Query: 409 ADEPEI-------------AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 455
           ++                 A ++   I+++G++P   + N L+ GL     L    R  +
Sbjct: 500 SESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFK 559

Query: 456 EMLNRRILIYEVTMHKLKKAFYNESR 481
           E+  + I   E+T   L        R
Sbjct: 560 ELQLKGISPDEITYGTLIDGLLRAHR 585



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 79/348 (22%), Positives = 146/348 (41%), Gaps = 20/348 (5%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDG--VLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           +N  +  L K GR  + +  + VM +DG   L L  ++ + D    A ++DE    +  M
Sbjct: 280 YNAFLSGLCKVGRVNEAFQRL-VMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTM 338

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGN 232
               +  DVV    ++   C +  +   AL FL+ +KK    PD   +  +L+     G+
Sbjct: 339 LERNISPDVVLYTIMIRG-CAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGD 397

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLIT-LIRGKQVDEALKFLRVMKGENCFPTLKF 291
           +E A+    EM++    N       +T +I  L +   VDEA++    M    C PT+  
Sbjct: 398 LERAHTLRSEMLQN---NLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMT 454

Query: 292 FSNALDILVKLNDSTHAVQLWDIM-----------VGIGFNLMPNLIMYNAVIGLLCNND 340
           ++  +D   +      A  L+  M           + +G N + +      ++  +C + 
Sbjct: 455 YNALIDGFYREGRLEEARMLFHKMEMGNNPSLFLRLTLGANQVRDSESLRKLVHDMCQSG 514

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
            V   ++    ++  G  PD +TYN +   L K + +    + F E+      P  +   
Sbjct: 515 QVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYG 574

Query: 401 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
           T I  LL A     A+ ++  IL++G  P  +  N ++  L  + +LS
Sbjct: 575 TLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLS 622



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 72/340 (21%), Positives = 144/340 (42%), Gaps = 19/340 (5%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCG-AGKYDEA 166
           G  L    ++ ++D L +  RF++ +   + M E  +       +I    C  AG+ ++A
Sbjct: 307 GFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDA 366

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
           +   DVM   G   D    N++L  +C   +           ++  +  D  +  I++ G
Sbjct: 367 LSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICG 426

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK----------- 275
             K G V+EA + F EM E    +P  V+ Y   +    R  +++EA             
Sbjct: 427 LCKRGLVDEAMQIFDEMGEH-GCDPT-VMTYNALIDGFYREGRLEEARMLFHKMEMGNNP 484

Query: 276 --FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
             FLR+  G N     +     +  + +      A +L   ++  G  ++P+++ YN +I
Sbjct: 485 SLFLRLTLGANQVRDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSG--VVPDVVTYNTLI 542

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
             LC   ++D   R F ++   G  PD +TY  + + L++  R ++    F  ++++   
Sbjct: 543 NGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSS 602

Query: 394 PTPLNCATAITMLLDADEPEIAIEIW-NYILENGILPLEA 432
           P+     + +  L    +   AI +W +Y+ +    P+E+
Sbjct: 603 PSLSIYNSMMRSLCRMKKLSQAINLWLDYLPKKYNFPVES 642



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 78/360 (21%), Positives = 150/360 (41%), Gaps = 27/360 (7%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
            +M+  L K G  ++       M E G   ++ T+ ++ D +   G+ +EA M F  M M
Sbjct: 421 TIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEM 480

Query: 176 H-----------GVEQ--DVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD----PDGD 218
                       G  Q  D  ++  L+  +C Q  Q  +A + L   + I+D    PD  
Sbjct: 481 GNNPSLFLRLTLGANQVRDSESLRKLVHDMC-QSGQVLKAYKLL---RSIIDSGVVPDVV 536

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++  L+ G  K  N++ A + F E+  +   +P+ +  Y T +  L+R  + ++A+   +
Sbjct: 537 TYNTLINGLCKARNLDGAVRLFKELQLK-GISPDEI-TYGTLIDGLLRAHRENDAMMLFQ 594

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL-MPNLIMYNAVIGLLC 337
            +      P+L  +++ +  L ++   + A+ LW   +   +N  + + ++ NA   +  
Sbjct: 595 NILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLWLDYLPKKYNFPVESEVLANAHKEI-- 652

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
            +  +D+  R   ++        S  Y +    L + +R  +  + FH + +     TP 
Sbjct: 653 EDGSLDDGVRELIKIDQEYGSISSNPYTIWLIGLCQVRRTDDALRIFHTLQEFGIDITPA 712

Query: 398 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
            CA  I  L        A++I  Y L   I+  +   N LL  L    R  D +  A  M
Sbjct: 713 CCALLINYLCWDRNLNAAVDIMLYALSKSIILSQPVGNRLLRWLCICYRRQDAQALAWRM 772


>gi|449465242|ref|XP_004150337.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
           mitochondrial-like [Cucumis sativus]
          Length = 690

 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 101/440 (22%), Positives = 184/440 (41%), Gaps = 47/440 (10%)

Query: 51  SSARIICEILAHASSDDIESALACTGIIPTPDL------VHEVLQL---SYDSPSSAVDF 101
           S+  I+ +I +  S++D+E    CTG+I   DL         +LQ    S DS  +   +
Sbjct: 208 STVNILIKIFS--SNEDLE---LCTGLIKKWDLRLNAYTYRCLLQAHIRSRDSDRAFNVY 262

Query: 102 FRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGA- 160
                +G +L  +A+N+++D L K+ + ++ +   + MK           +I     G  
Sbjct: 263 MEMWSKGYQLDIFAYNMLLDALAKDEQLDRSYKVFKDMKLKHCNPDEYTYTIMIRMTGKM 322

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSF 220
           G+ +E++  F+ M   G   +++A N+++ A+ +        L F N +K    P+  ++
Sbjct: 323 GRAEESLALFEEMLTKGCTPNLIAYNTMIQALSKSGMVDKAILLFCNMIKNNCRPNEFTY 382

Query: 221 AILLEGWEKEGNV-------EEANKTFGEMVERF---------EWNPEHVL--------- 255
           +I+L     EG +       E +NK   + +  +           +  H L         
Sbjct: 383 SIILNVLVAEGQLGRLDEVLEVSNKFINKSIYAYLVRTLSKLGHSSEAHRLFCNMWSFHD 442

Query: 256 -----AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
                AY + L +L RG +  EA++ L  +  +        ++  L  L KL   +H   
Sbjct: 443 GGDRDAYISMLESLCRGGKTVEAIELLSKVHEKGISTDTMMYNTVLSTLGKLKQVSHLHD 502

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
           L++ M   G    P++  YN +I  L     V      F+++      PD ++YN +  C
Sbjct: 503 LYEKMKQDG--PFPDIFTYNILISSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLINC 560

Query: 371 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 430
           L KN  V E    F EM      P  +  +T I      D+ E+A  +++ ++  G  P 
Sbjct: 561 LGKNGDVDEAHMRFLEMQDKGLNPDVVTYSTLIECFGKTDKVEMARSLFDRMITQGCCPN 620

Query: 431 EASANELLVGLRNLGRLSDV 450
             + N LL  L   GR ++ 
Sbjct: 621 IVTYNILLDCLERAGRTAET 640



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/329 (22%), Positives = 150/329 (45%), Gaps = 17/329 (5%)

Query: 80  TPDLVHEVLQLSYDSPSSAVD-----FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWN 134
           TP+L+     +   S S  VD     F        R + + ++++++VL   G+  ++  
Sbjct: 341 TPNLIAYNTMIQALSKSGMVDKAILLFCNMIKNNCRPNEFTYSIILNVLVAEGQLGRLDE 400

Query: 135 AVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSF-DVMSMH-GVEQDVVAVNSLLSAI 192
            + V   +  ++   +A +  +    G   EA   F ++ S H G ++D  A  S+L ++
Sbjct: 401 VLEV--SNKFINKSIYAYLVRTLSKLGHSSEAHRLFCNMWSFHDGGDRD--AYISMLESL 456

Query: 193 CRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           CR   +T  A+E L++V +K +  D   +  +L    K   V   +  + +M +   + P
Sbjct: 457 CRG-GKTVEAIELLSKVHEKGISTDTMMYNTVLSTLGKLKQVSHLHDLYEKMKQDGPF-P 514

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           + +  Y   + +L R  +V EA++    ++  +C P +  +++ ++ L K  D   A   
Sbjct: 515 D-IFTYNILISSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLINCLGKNGDVDEAHMR 573

Query: 312 WDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECL 371
           +  M   G N  P+++ Y+ +I      D V+     FD+M+  G  P+ +TYN++ +CL
Sbjct: 574 FLEMQDKGLN--PDVVTYSTLIECFGKTDKVEMARSLFDRMITQGCCPNIVTYNILLDCL 631

Query: 372 IKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
            +  R  E    + ++ +    P  +  A
Sbjct: 632 ERAGRTAETVDLYAKLREQGLTPDSITYA 660



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 87/411 (21%), Positives = 163/411 (39%), Gaps = 46/411 (11%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176
           N+++ +   N   E     ++  K D  L+  T+  +  ++  +   D A   +  M   
Sbjct: 211 NILIKIFSSNEDLELCTGLIK--KWDLRLNAYTYRCLLQAHIRSRDSDRAFNVYMEMWSK 268

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEE 235
           G + D+ A N LL A+ + E Q  R+ +    +K K  +PD  ++ I++    K G  EE
Sbjct: 269 GYQLDIFAYNMLLDALAKDE-QLDRSYKVFKDMKLKHCNPDEYTYTIMIRMTGKMGRAEE 327

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
           +   F EM+ +      +++AY T +  L +   VD+A+     M   NC P    +S  
Sbjct: 328 SLALFEEMLTK--GCTPNLIAYNTMIQALSKSGMVDKAILLFCNMIKNNCRPNEFTYSII 385

Query: 296 LDILV--------------------------------KLNDSTHAVQLWDIMVGIGFNLM 323
           L++LV                                KL  S+ A +L+  M    F+  
Sbjct: 386 LNVLVAEGQLGRLDEVLEVSNKFINKSIYAYLVRTLSKLGHSSEAHRLFCNM--WSFHDG 443

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
            +   Y +++  LC             ++   G   D++ YN +   L K K+V  +   
Sbjct: 444 GDRDAYISMLESLCRGGKTVEAIELLSKVHEKGISTDTMMYNTVLSTLGKLKQVSHLHDL 503

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
           + +M ++   P        I+ L    + + A+E++  +  +   P   S N L+  L  
Sbjct: 504 YEKMKQDGPFPDIFTYNILISSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLINCLGK 563

Query: 444 LGRLSDVR-RFAE---EMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSL 490
            G + +   RF E   + LN  ++ Y   +    K   ++    R +FD +
Sbjct: 564 NGDVDEAHMRFLEMQDKGLNPDVVTYSTLIECFGKT--DKVEMARSLFDRM 612


>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
 gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
          Length = 596

 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 88/404 (21%), Positives = 174/404 (43%), Gaps = 48/404 (11%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N++++   +  +       + ++MK     S+ T +S+ + YC   +  +AV   D 
Sbjct: 83  YTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQ 142

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEG 231
           M   G   D +   +L+  +    N+ S A+  ++R V++   P+  ++ +++ G  K G
Sbjct: 143 MVEMGYRPDTITFTTLIHGLFLH-NKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRG 201

Query: 232 NVEEANKTFGEM-VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE------- 283
           + + A     +M   + E +   V+ + T + +L + + VD+AL   + M+ +       
Sbjct: 202 DTDLALNLLNKMEAAKIEAD---VVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVV 258

Query: 284 ------NCF----------------------PTLKFFSNALDILVKLNDSTHAVQLWDIM 315
                 +C                       P L  F+  +D  VK      A +L+D M
Sbjct: 259 TYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDM 318

Query: 316 VGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 375
           +    +  P++  YN+++   C +D +D   + F+ MV    FPD +TYN + +   K+K
Sbjct: 319 IKRSID--PDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSK 376

Query: 376 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 435
           RV +  + F EM         +   T I  L    + + A +++  ++ +G+ P   + +
Sbjct: 377 RVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYS 436

Query: 436 ELLVGLRNLGRLSDVRRFAEEM----LNRRILIYEVTMHKLKKA 475
            LL GL N G+L       + M    +   I IY   +  + KA
Sbjct: 437 ILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKA 480



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/367 (20%), Positives = 158/367 (43%), Gaps = 7/367 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKE-DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++  + K  +F+ + +    M+  + V  L T+  + + +C   +   A+     M 
Sbjct: 50  FNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMM 109

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNV 233
             G E  +V ++SLL+  C  + + S A+  ++++ ++   PD  +F  L+ G       
Sbjct: 110 KLGYEPSIVTLSSLLNGYCHGK-RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKA 168

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            EA      MV+R    P +++ Y   +  L +    D AL  L  M+       +  F+
Sbjct: 169 SEAVALVDRMVQR-GCQP-NLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFN 226

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +D L K      A+ L+  M   G  + PN++ Y+++I  LC+     +  +    M+
Sbjct: 227 TIIDSLCKYRHVDDALNLFKEMETKG--IRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 284

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
                P+ +T+N + +  +K  +  E EK + +MIK    P      + +      D  +
Sbjct: 285 EKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLD 344

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 473
            A +++ +++     P   + N L+ G     R+ D      EM +R ++   VT   L 
Sbjct: 345 KAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 404

Query: 474 KAFYNES 480
           +  +++ 
Sbjct: 405 QGLFHDG 411



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/382 (21%), Positives = 156/382 (40%), Gaps = 37/382 (9%)

Query: 92  YDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPT 149
           ++  S AV    R   RG + +   + ++V+ L K G  +   N +  M+   +   +  
Sbjct: 165 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVI 224

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F +I DS C     D+A+  F  M   G+  +VV  +SL+S +C     +  +    + +
Sbjct: 225 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 284

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER------FEWNP------------ 251
           +K ++P+  +F  L++ + KEG   EA K + +M++R      F +N             
Sbjct: 285 EKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLD 344

Query: 252 ---------------EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
                            V+ Y T +    + K+V++  +  R M           ++  +
Sbjct: 345 KAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 404

Query: 297 DILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG 356
             L    D  +A +++  MV  G  + P+++ Y+ ++  LCNN  ++     FD M    
Sbjct: 405 QGLFHDGDCDNAQKVFKQMVSDG--VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSE 462

Query: 357 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 416
              D   Y  + E + K  +V +    F  +     +P  +   T I+ L      + A 
Sbjct: 463 IKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAY 522

Query: 417 EIWNYILENGILPLEASANELL 438
            +   + E+G LP   + N L+
Sbjct: 523 ALLKKMKEDGPLPNSGTYNTLI 544



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 73/337 (21%), Positives = 145/337 (43%), Gaps = 6/337 (1%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  F  +  +     K+D  +   + M    +   +   N L++  CR+ +Q S AL  
Sbjct: 46  SIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRR-SQISLALAL 104

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L ++ K+  +P   + + LL G+     + +A     +MVE   + P+  + + T +  L
Sbjct: 105 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVE-MGYRPD-TITFTTLIHGL 162

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
               +  EA+  +  M    C P L  +   ++ L K  D+  A+ L + M      +  
Sbjct: 163 FLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAA--KIEA 220

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           +++++N +I  LC    VD+    F +M   G  P+ +TY+ +  CL    R  +  +  
Sbjct: 221 DVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLL 280

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
            +MI+ +  P  +     I   +   +   A ++++ +++  I P   + N L+ G    
Sbjct: 281 SDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMH 340

Query: 445 GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
            RL   ++  E M+++      VT + L K F    R
Sbjct: 341 DRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKR 377



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/308 (20%), Positives = 128/308 (41%), Gaps = 25/308 (8%)

Query: 96  SSAVDFFRWAGRGQRLSPY----------AWNLMVDVLGKNGRF---EQMWNAV--RVMK 140
           S    + RW+   Q LS             +N ++D   K G+F   E++++ +  R + 
Sbjct: 265 SCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSID 324

Query: 141 EDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS 200
            D    + T+ S+ + +C   + D+A   F+ M       DVV  N+L+   C+ +    
Sbjct: 325 PD----IFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVED 380

Query: 201 RALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF 260
               F     + +  D  ++  L++G   +G+ + A K F +MV   +  P  ++ Y   
Sbjct: 381 GTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVS--DGVPPDIMTYSIL 438

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF 320
           L  L    ++++AL+    M+       +  ++  ++ + K          WD+   +  
Sbjct: 439 LDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDG---WDLFCSLSL 495

Query: 321 -NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
             + PN++ YN +I  LC+   +   +    +M   G  P+S TYN +    +++     
Sbjct: 496 KGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAA 555

Query: 380 VEKFFHEM 387
             +   EM
Sbjct: 556 SAELIREM 563


>gi|255660996|gb|ACU25667.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
          Length = 376

 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 90/400 (22%), Positives = 177/400 (44%), Gaps = 32/400 (8%)

Query: 75  TGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWN 134
           +G I   + V++ + LS  SP S V                +N M++   +  + +  + 
Sbjct: 3   SGDIDGAERVYKEIVLSKVSPDSVV----------------YNAMLNGYFRVAKIKDCFE 46

Query: 135 AVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194
              +M  +G  S+ +F  +       GK DE +  +++M   G  +D +    L+   C+
Sbjct: 47  LWEMMGSEGNRSVSSFNIMMRGLFDNGKVDEVISIWELMKKSGFVEDSITFGILVHGFCK 106

Query: 195 QE--NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
               N++   LE   +   ++D    +++ ++ G  KE N+++A      M++       
Sbjct: 107 NGYINKSLHVLEMAEQKGGVLDAF--AYSAMINGLCKEANLDKAVSVLNGMIKSGCKPNA 164

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
           HV  Y T +  L+   + ++A++  R M   +C PT+  ++  ++ L K      A  L 
Sbjct: 165 HV--YNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYNLV 222

Query: 313 DIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 372
             ++  G N  P +I Y+ ++  LC +  V+   + ++Q+   G  PD   +N++   L 
Sbjct: 223 KELLDKGLN--PGVITYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLC 280

Query: 373 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML----LDADEPEIAIEIWNYILENGIL 428
               +      + +M  N W+  P N  +  T++     D D    A+ IW  IL NG+ 
Sbjct: 281 SVGEMQLALSLYFDM--NRWKCAP-NLVSHNTLMEGFYKDGDIRN-ALVIWARILRNGLE 336

Query: 429 PLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 468
           P   S N  L GL +  R+SD   F  + + ++I++ ++T
Sbjct: 337 PDIISYNITLKGLCSCNRISDAILFLHDAVTKKIVLTKIT 376



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 65/323 (20%), Positives = 130/323 (40%), Gaps = 5/323 (1%)

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG 217
           C +G  D A   +  + +  V  D V  N++L+   R   +     E    +    +   
Sbjct: 1   CESGDIDGAERVYKEIVLSKVSPDSVVYNAMLNGYFRVA-KIKDCFELWEMMGSEGNRSV 59

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            SF I++ G    G V+E    + E++++  +  E  + +   +    +   ++++L  L
Sbjct: 60  SSFNIMMRGLFDNGKVDEVISIW-ELMKKSGF-VEDSITFGILVHGFCKNGYINKSLHVL 117

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337
            + + +        +S  ++ L K  +   AV + + M+  G    PN  +YN +I  L 
Sbjct: 118 EMAEQKGGVLDAFAYSAMINGLCKEANLDKAVSVLNGMIKSGCK--PNAHVYNTLINGLV 175

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
                ++  R F +M      P  +TYN +   L KN+   E      E++     P  +
Sbjct: 176 GASKFEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLNPGVI 235

Query: 398 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
             +  +  L    + E A+++WN +   G  P     N L+ GL ++G +        +M
Sbjct: 236 TYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGEMQLALSLYFDM 295

Query: 458 LNRRILIYEVTMHKLKKAFYNES 480
              +     V+ + L + FY + 
Sbjct: 296 NRWKCAPNLVSHNTLMEGFYKDG 318


>gi|357458533|ref|XP_003599547.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488595|gb|AES69798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 636

 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 91/388 (23%), Positives = 172/388 (44%), Gaps = 26/388 (6%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP------TFASIFDSYCGAGKYDEAVM 168
            +N ++  L  NG+ ++  +       D VL+L       ++ ++ +  C  G+   A+ 
Sbjct: 140 TFNTLIKGLCLNGKVKEALHF-----HDHVLALGFHLDQFSYGTLINGLCKIGETRTALQ 194

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
               +    V+ +VV  N+++ ++C+ +        +   + K + PD  +F+ L+ G+ 
Sbjct: 195 MLRKIDGKLVKINVVMYNTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFC 254

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
             G +EEA   F EMV +   NP++   +   +  L +   +  A   L VM  E   P 
Sbjct: 255 IVGQLEEAFGLFREMVLK-NINPDYY-TFNILVDALCKEGNLKGAKNMLVVMMKEGVMPN 312

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
           +  +S+ +D    +N    A  + + +  +G    PN   Y  +I   C    VD     
Sbjct: 313 VVTYSSLMDGYCLVNQVNKAKHVLNTISQMG--AAPNAHSYCTMINGFCKIKMVDEALSL 370

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL---NCATAITM 405
           F+ M F G  PD +TYN + + L K+ R+    +   EM  N  QP  +   NC   I  
Sbjct: 371 FNDMQFKGIAPDKVTYNSLIDGLCKSGRISYAWELVDEMHDN-GQPANIFTYNC--LIDA 427

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI- 464
           L      + AI +   I + GI P   + N L+ GL  +GRL + +   +++L++   + 
Sbjct: 428 LCKNHHVDQAIALVKKIKDQGIQPDMYTFNILIYGLCKVGRLKNAQDVFQDLLSKGYSVN 487

Query: 465 ---YEVTMHKL-KKAFYNESRSMRDIFD 488
              Y + ++ L K+  ++E+ ++    D
Sbjct: 488 AWTYNIMVNGLCKEGLFDEAEALLSKMD 515



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 133/277 (48%), Gaps = 7/277 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N++VD L K G  +   N + VM ++GV+ ++ T++S+ D YC   + ++A    + 
Sbjct: 279 YTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNT 338

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEG 231
           +S  G   +  +  ++++  C+ +     AL   N ++ K + PD  ++  L++G  K G
Sbjct: 339 ISQMGAAPNAHSYCTMINGFCKIK-MVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSG 397

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            +  A +   EM +  +  P ++  Y   +  L +   VD+A+  ++ +K +   P +  
Sbjct: 398 RISYAWELVDEMHDNGQ--PANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQPDMYT 455

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           F+  +  L K+    +A  ++  ++  G+++  N   YN ++  LC     D       +
Sbjct: 456 FNILIYGLCKVGRLKNAQDVFQDLLSKGYSV--NAWTYNIMVNGLCKEGLFDEAEALLSK 513

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           M  +G  PD++TY  + + L       + EK   EMI
Sbjct: 514 MDDNGIIPDAVTYETLIQALFHKDENEKAEKLLREMI 550



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 64/310 (20%), Positives = 131/310 (42%), Gaps = 6/310 (1%)

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEG 231
           +  HG+  D+   N L++  C    + + A   + ++ K+  +PD  +F  L++G    G
Sbjct: 94  LEFHGITPDIFTFNILINCYCHMA-EMNFAFSMMAKILKMGYEPDTITFNTLIKGLCLNG 152

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            V+EA   F + V    ++ +   +Y T +  L +  +   AL+ LR + G+     +  
Sbjct: 153 KVKEA-LHFHDHVLALGFHLDQ-FSYGTLINGLCKIGETRTALQMLRKIDGKLVKINVVM 210

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           ++  +D L K      A +L+  M  I   + P+++ ++A+I   C    ++  F  F +
Sbjct: 211 YNTIIDSLCKHKLVIDAYELYSQM--IAKKISPDVVTFSALIYGFCIVGQLEEAFGLFRE 268

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           MV     PD  T+N++ + L K   +   +     M+K    P  +  ++ +      ++
Sbjct: 269 MVLKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQ 328

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK 471
              A  + N I + G  P   S   ++ G   +  + +      +M  + I   +VT + 
Sbjct: 329 VNKAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNS 388

Query: 472 LKKAFYNESR 481
           L        R
Sbjct: 389 LIDGLCKSGR 398



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/316 (22%), Positives = 130/316 (41%), Gaps = 18/316 (5%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF  + + YC   + + A      +   G E D +  N+L+  +C    +   AL F + 
Sbjct: 105 TFNILINCYCHMAEMNFAFSMMAKILKMGYEPDTITFNTLIKGLCLN-GKVKEALHFHDH 163

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEA----NKTFGEMVERFEWNPEHVLAYETFLIT 263
           V  +    D  S+  L+ G  K G    A     K  G++V+       +V+ Y T + +
Sbjct: 164 VLALGFHLDQFSYGTLINGLCKIGETRTALQMLRKIDGKLVKI------NVVMYNTIIDS 217

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLM 323
           L + K V +A +    M  +   P +  FS  +     +     A  L+  MV    N  
Sbjct: 218 LCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNIN-- 275

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFE--CLIKNKRVHEVE 381
           P+   +N ++  LC   ++         M+  G  P+ +TY+ + +  CL+   +V++ +
Sbjct: 276 PDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLV--NQVNKAK 333

Query: 382 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 441
              + + +    P   +  T I         + A+ ++N +   GI P + + N L+ GL
Sbjct: 334 HVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGL 393

Query: 442 RNLGRLSDVRRFAEEM 457
              GR+S      +EM
Sbjct: 394 CKSGRISYAWELVDEM 409



 Score = 43.5 bits (101), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 63/141 (44%), Gaps = 3/141 (2%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           GQ  + + +N ++D L KN   +Q    V+ +K+ G+   + TF  +    C  G+   A
Sbjct: 413 GQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQPDMYTFNILIYGLCKVGRLKNA 472

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLE 225
              F  +   G   +    N +++ +C+ E     A   L+++    + PD  ++  L++
Sbjct: 473 QDVFQDLLSKGYSVNAWTYNIMVNGLCK-EGLFDEAEALLSKMDDNGIIPDAVTYETLIQ 531

Query: 226 GWEKEGNVEEANKTFGEMVER 246
               +   E+A K   EM+ R
Sbjct: 532 ALFHKDENEKAEKLLREMIAR 552



 Score = 40.0 bits (92), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 32/156 (20%), Positives = 69/156 (44%), Gaps = 6/156 (3%)

Query: 325 NLIMYNAVIGLLC--NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
           ++I +N ++G L   NN+          ++ FHG  PD  T+N++  C      ++    
Sbjct: 65  SIIEFNKILGSLVKSNNNHYPTAISLSRRLEFHGITPDIFTFNILINCYCHMAEMNFAFS 124

Query: 383 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 442
              +++K  ++P  +   T I  L    + + A+   +++L  G    + S   L+ GL 
Sbjct: 125 MMAKILKMGYEPDTITFNTLIKGLCLNGKVKEALHFHDHVLALGFHLDQFSYGTLINGLC 184

Query: 443 NLGR----LSDVRRFAEEMLNRRILIYEVTMHKLKK 474
            +G     L  +R+   +++   +++Y   +  L K
Sbjct: 185 KIGETRTALQMLRKIDGKLVKINVVMYNTIIDSLCK 220


>gi|115469690|ref|NP_001058444.1| Os06g0694600 [Oryza sativa Japonica Group]
 gi|53791827|dbj|BAD53893.1| pentatricopeptide repeat-containing protein-like [Oryza sativa
           Japonica Group]
 gi|53792848|dbj|BAD53881.1| pentatricopeptide repeat-containing protein-like [Oryza sativa
           Japonica Group]
 gi|113596484|dbj|BAF20358.1| Os06g0694600 [Oryza sativa Japonica Group]
          Length = 484

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 156/345 (45%), Gaps = 27/345 (7%)

Query: 144 VLSLPTFASIFDSYCGA----GKYDEAVMSFD----VMSMHGVEQDVVAVNSLLSAICRQ 195
           +LS P  A +  +   A      +D AV  FD    V +  G E  V  +N+LL A C  
Sbjct: 117 LLSTPALAVLLSTALSASAPGASFDAAVTCFDSAARVWARAGREFGVAELNALLRAFC-A 175

Query: 196 ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
             + + A    +R      PD  +F  LL G+++ GN +  +  + + V R  + P+ V 
Sbjct: 176 RGRVAEARALFHRYCDAYPPDARTFNTLLLGFKEAGNAQALDLFYHDAVLR-GFVPDAV- 233

Query: 256 AYETFLITLIRGKQVDEALKFLRVM-KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314
           +Y   +    +  +  +AL  L  M K ENC PTL+ F+  +     + ++  A QL+D 
Sbjct: 234 SYCVRMDAYCKKGRFLDALDLLDEMRKRENCRPTLQVFTTLIYGAGIVRNAIRARQLFDE 293

Query: 315 MVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN 374
           M   G    P+   +NA++G      D+ +      +M   G   D ++YN +   L   
Sbjct: 294 MGQWGVT--PDRGAHNALMGAYVRARDLQSGMTVMSEMERKGIGLDDVSYNTM---LCGF 348

Query: 375 KRVHEVE---KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 431
           +R+ ++E   K + +M+ + + P        + +  +   P++ +E+W+Y+L  G +P  
Sbjct: 349 QRIGDLEGIWKVYSKMVGSGFMPRTRTTMLLMKVFCENARPDLGLELWDYLLGKGCVPHR 408

Query: 432 ASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
            + + L+ GL   G + +  R   EM+       E+ M   ++AF
Sbjct: 409 HALDVLVTGLCCRGVVLEAYRCFREMI-------EMGMTPTERAF 446


>gi|359482689|ref|XP_003632809.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Vitis vinifera]
          Length = 879

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 89/407 (21%), Positives = 164/407 (40%), Gaps = 52/407 (12%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYD 164
           G+G   + +++  ++    K G +++  N +  M E G    L T+ ++      AG+ D
Sbjct: 372 GKGLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHKPDLVTYGALVHGLVVAGEVD 431

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
            A+   + M   GV  D    N L+S +C++    +  L     + + V PD   +A L+
Sbjct: 432 VALTIREKMLERGVFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLV 491

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHV------------------------------ 254
           +G+ + GN++EA K F   +E+   NP  V                              
Sbjct: 492 DGFIRNGNLDEARKLFELTIEK-GMNPGIVGYNAMIKGYCKFGMMKDAMACINRMKKRHL 550

Query: 255 ----LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
                 Y T +   ++   +D A K  R M    C P +  +++ ++   +  D   +++
Sbjct: 551 APDEFTYSTVIDGYVKQHDLDGAQKMFREMVKMKCKPNVVTYTSLINGFCRKGDLHRSLK 610

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
           ++  M   G  L+PN++ Y+ +IG  C    + +   FF++M+ +   P+ +T+N +   
Sbjct: 611 IFREMQACG--LVPNVVTYSILIGSFCKEAKLIDAASFFEEMLMNKCVPNDVTFNYLVNG 668

Query: 371 LIKNKRVHEVEK--------------FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 416
             KN      EK              FF  MI + W P      + +  L        A+
Sbjct: 669 FSKNGTRAISEKGNEFQENKQSMFLNFFGRMISDGWAPRSAAYNSILICLCQYGMFRTAL 728

Query: 417 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
           ++ N +   G +P   S   LL G+   GR  + +      LN R L
Sbjct: 729 QLSNKMTSKGCIPDSVSFVALLHGVCLEGRSKEWKNIVSCNLNEREL 775



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 85/409 (20%), Positives = 174/409 (42%), Gaps = 43/409 (10%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +  +++   K G F+ +   +  M   G+ +++  + +I D+    G   +AV + + M
Sbjct: 276 TYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAVETIEGM 335

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGN 232
              G + D+V  N+L+S  CR + + S A + L + + K + P+  S+  L+  + K+G 
Sbjct: 336 IECGCKPDIVTYNTLISGSCR-DGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGG 394

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP----- 287
            + A+    EM ER   +   ++ Y   +  L+   +VD AL     M     FP     
Sbjct: 395 YDRASNWLIEMTER--GHKPDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFPDAGIY 452

Query: 288 -------TLKF-----------------------FSNALDILVKLNDSTHAVQLWDIMVG 317
                    KF                       ++  +D  ++  +   A +L+++ + 
Sbjct: 453 NILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIE 512

Query: 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
            G N  P ++ YNA+I   C    + +     ++M      PD  TY+ + +  +K   +
Sbjct: 513 KGMN--PGIVGYNAMIKGYCKFGMMKDAMACINRMKKRHLAPDEFTYSTVIDGYVKQHDL 570

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 437
              +K F EM+K + +P  +   + I       +   +++I+  +   G++P   + + L
Sbjct: 571 DGAQKMFREMVKMKCKPNVVTYTSLINGFCRKGDLHRSLKIFREMQACGLVPNVVTYSIL 630

Query: 438 LVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF-YNESRSMRD 485
           +       +L D   F EEML  + +  +VT + L   F  N +R++ +
Sbjct: 631 IGSFCKEAKLIDAASFFEEMLMNKCVPNDVTFNYLVNGFSKNGTRAISE 679



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 101/509 (19%), Positives = 195/509 (38%), Gaps = 120/509 (23%)

Query: 34  RPTRPRFPTHLDAPYISSSARIICEILAHASS--DDIESALACTGIIPTPDLVHEVLQLS 91
           +PT P  P+    P I++  + I E+L   +   +++++  + + ++ + D+ H VL   
Sbjct: 14  KPTPPSKPSL--KPRINNLVKDILEVLHTHNQWEENLQTRFSESEVLAS-DVAHLVLDRI 70

Query: 92  YDSPSSAVDFFRWAGRGQRLSP---YAWNLMVDVLGKNGRFEQMWNAVRVMK-EDGVLSL 147
            D     + FF W  RGQ   P   +A++ ++ +L ++  F +M   +  M+ E+   + 
Sbjct: 71  RDV-ELGLKFFDWVSRGQYSGPINGFAYSSLLKLLARSRVFSEMEVVLENMRVEEMSPTR 129

Query: 148 PTFASIFDSYCGAGKYDEAV-MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206
              + +  +Y  +G  ++A+ + + V+  +    DV+A NSLL+ +              
Sbjct: 130 EAMSIVIQAYSDSGLVEKALELYYFVLKTYTYFPDVIACNSLLNMLV------------- 176

Query: 207 NRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT--L 264
                                 K G +E A K + EM+E        V  Y T ++   L
Sbjct: 177 ----------------------KLGRIEIARKLYDEMLEIDGAGDRCVDNYSTCIMVKGL 214

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
            +  +++E  K +    G+ C P + F++  +D   K  D   A  L+  +   GF  +P
Sbjct: 215 CKEGKLEEGRKLIEDRWGQGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLKGF--LP 272

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFF----------------------------------- 349
            +  Y A+I   C   D   + R                                     
Sbjct: 273 TVETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAVETI 332

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE-----MIKNEWQPTPL------- 397
           + M+  G  PD +TYN +     ++ +V E ++   +     ++ N++  TPL       
Sbjct: 333 EGMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQ 392

Query: 398 -----------------------NCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 434
                                       +  L+ A E ++A+ I   +LE G+ P     
Sbjct: 393 GGYDRASNWLIEMTERGHKPDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFPDAGIY 452

Query: 435 NELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
           N L+ GL    +L   +    EML++ +L
Sbjct: 453 NILMSGLCKKFKLPAAKLLLAEMLDQSVL 481


>gi|356499253|ref|XP_003518456.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial-like [Glycine max]
          Length = 510

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 110/451 (24%), Positives = 184/451 (40%), Gaps = 27/451 (5%)

Query: 46  APYISSSARIICEILA--HASSDDIESALACTGIIPTPDLV-HEVLQLSYDSPSSAVDFF 102
           +P   S A +I ++L   H      ES L   GI  TP L+ H +L+L   S   A+  F
Sbjct: 30  SPRDESDAELISKLLLQHHNPFHATESPLQLHGITLTPTLLFHTLLRLKNHS-KIALSLF 88

Query: 103 RWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSL--PTFASIFDSYC 158
            +A       LS  ++ L++D + K  +F+  W  +  M +   L+    TF ++     
Sbjct: 89  HYAKTLPNPPLSHSSFTLLIDTMAKVRQFDVAWQLIVEMDQRHHLTPTPSTFLTLIRRLI 148

Query: 159 GAGKYDEAVMSF-DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG 217
            AG   +AV +F D+ +    +        LL  +C+       A+E  N+ K    P  
Sbjct: 149 CAGLTRQAVRAFHDIDAFSETKTTPQDFCVLLDTLCKY-GHVRLAVEVFNKNKHTFPPTV 207

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKF 276
             + +L+ GW K G ++ A     EM+++  E N   V+ Y   L  + R   +    +F
Sbjct: 208 KMYTVLIYGWCKIGRIKTAQSFLNEMIDKGIEPN---VVTYNVLLNGVCRKVSLHPEERF 264

Query: 277 LRVMK-GENCFPTLKFFS-----NALDILVKLNDSTHAVQL----WDIMVGIGFNLMPNL 326
            R ++  E  F  ++         +  IL+ +    H  QL      +M   G  + PN+
Sbjct: 265 ERTIRNAEEVFDQMRESGIEPDVTSFSILLHVYSRAHKPQLVLDKLSLMKEKG--ICPNV 322

Query: 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 386
           +MY +VI  L +   +++  R   +MV  G  P + TYN  F+     K      + F  
Sbjct: 323 VMYTSVIKCLASCGWLEDAERLLGEMVRDGVSPCAATYNCFFKEFRGRKDGESALRMFKR 382

Query: 387 MIKNEW-QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
           M ++    P+       I M L  D  ++  EIW  + E G  P       L+ GL    
Sbjct: 383 MKEDGLCMPSSHTYVILIRMFLRLDMIKVVKEIWQDMKETGAGPDLDLYTVLIHGLCERQ 442

Query: 446 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
           R  +   +  EM+    L  + T   L +  
Sbjct: 443 RWREACHYFVEMIENGFLPLKGTFESLYRGL 473



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 70/314 (22%), Positives = 129/314 (41%), Gaps = 19/314 (6%)

Query: 110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT---FASIFDSYCGAGKYDEA 166
           + +P  + +++D L K G       AV V  ++     PT   +  +   +C  G+   A
Sbjct: 170 KTTPQDFCVLLDTLCKYGHVRL---AVEVFNKNKHTFPPTVKMYTVLIYGWCKIGRIKTA 226

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQ---------ENQTSRALEFLNRVKKI-VDPD 216
               + M   G+E +VV  N LL+ +CR+         E     A E  +++++  ++PD
Sbjct: 227 QSFLNEMIDKGIEPNVVTYNVLLNGVCRKVSLHPEERFERTIRNAEEVFDQMRESGIEPD 286

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
             SF+ILL  + +    +        M E+      +V+ Y + +  L     +++A + 
Sbjct: 287 VTSFSILLHVYSRAHKPQLVLDKLSLMKEK--GICPNVVMYTSVIKCLASCGWLEDAERL 344

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLL 336
           L  M  +   P    ++          D   A++++  M   G   MP+   Y  +I + 
Sbjct: 345 LGEMVRDGVSPCAATYNCFFKEFRGRKDGESALRMFKRMKEDGL-CMPSSHTYVILIRMF 403

Query: 337 CNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 396
              D +  V   +  M   GA PD   Y ++   L + +R  E   +F EMI+N + P  
Sbjct: 404 LRLDMIKVVKEIWQDMKETGAGPDLDLYTVLIHGLCERQRWREACHYFVEMIENGFLPLK 463

Query: 397 LNCATAITMLLDAD 410
               +    L+ AD
Sbjct: 464 GTFESLYRGLIQAD 477


>gi|225429339|ref|XP_002269471.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02860
           [Vitis vinifera]
          Length = 811

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 156/370 (42%), Gaps = 12/370 (3%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAG-KYDEAVMSFD 171
           YA+  M+     NGR+ +     + M+E G   +L T+  I + Y   G  +++ V   D
Sbjct: 201 YAYTSMITAFTSNGRYREAVMVFKKMEEVGCKPTLITYNVILNVYGKMGMPWNKMVGLVD 260

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKE 230
            M   G+  D    N+L+S  CR+ N    A   L  +K     PD  ++  LL+ + K 
Sbjct: 261 RMKSAGIAPDSYTYNTLISC-CRRGNLYEEAAGVLKEMKLAGFSPDKVTYNALLDVYGKS 319

Query: 231 GNVEEANKTFGEMVERFEWN--PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
              +EA +   EM    E N  P  ++ Y + +    R   +++AL+    M  +   P 
Sbjct: 320 RRSKEAMEVLQEM----EGNGCPPSIVTYNSLISAYARDGLLEDALELKNQMVEKGIKPD 375

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
           +  ++  L    K      AVQ+++ M   G    PN+  +NA+I +  N      + + 
Sbjct: 376 VFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCK--PNICTFNALIKMHGNRGKFTEMMKV 433

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
           F+ +      PD +T+N +     +N    EV   F EM +  + P      T I+    
Sbjct: 434 FEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSR 493

Query: 409 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 468
               + A+ ++  +LE G+ P  +S N +L  L   G      +   EM + R    E+T
Sbjct: 494 CGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGRCKPNELT 553

Query: 469 MHKLKKAFYN 478
              L  A+ N
Sbjct: 554 YCSLLHAYAN 563



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 79/349 (22%), Positives = 146/349 (41%), Gaps = 17/349 (4%)

Query: 84  VHEVLQLSYDSPSSAVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKE 141
           V+  + + ++     VD  + AG    ++P  Y +N ++    +   +E+    ++ MK 
Sbjct: 244 VYGKMGMPWNKMVGLVDRMKSAG----IAPDSYTYNTLISCCRRGNLYEEAAGVLKEMKL 299

Query: 142 DGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS 200
            G      T+ ++ D Y  + +  EA+     M  +G    +V  NSL+SA  R +    
Sbjct: 300 AGFSPDKVTYNALLDVYGKSRRSKEAMEVLQEMEGNGCPPSIVTYNSLISAYAR-DGLLE 358

Query: 201 RALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYET 259
            ALE  N+ V+K + PD  ++  LL G+EK G  + A + F EM  R E    ++  +  
Sbjct: 359 DALELKNQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEM--RNEGCKPNICTFNA 416

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG 319
            +       +  E +K    +K   C P +  ++  L +  +    +    ++  M   G
Sbjct: 417 LIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAG 476

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
           F  +P    +N +I         D     + +M+  G  PD  +YN +   L +     +
Sbjct: 477 F--VPERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQ 534

Query: 380 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE----IAIEIWNYILE 424
            EK   EM     +P  L   + +    +  E E    +A EI++ I+E
Sbjct: 535 SEKVLAEMKDGRCKPNELTYCSLLHAYANGKEIERMCALAEEIYSGIIE 583



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 68/300 (22%), Positives = 122/300 (40%), Gaps = 18/300 (6%)

Query: 201 RALEFL-NRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYE 258
           R  E++ NR +  +  +G   A+++    K G V  A      +  + F+ +   V AY 
Sbjct: 148 RVFEWVRNRKESELLLNGSIIAVIISILGKGGRVSAAASLLHNLCKDGFDVD---VYAYT 204

Query: 259 TFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI 318
           + +       +  EA+   + M+   C PTL  ++  L++  K+         W+ MVG+
Sbjct: 205 SMITAFTSNGRYREAVMVFKKMEEVGCKPTLITYNVILNVYGKMG------MPWNKMVGL 258

Query: 319 -----GFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 373
                   + P+   YN +I      +  +       +M   G  PD +TYN + +   K
Sbjct: 259 VDRMKSAGIAPDSYTYNTLISCCRRGNLYEEAAGVLKEMKLAGFSPDKVTYNALLDVYGK 318

Query: 374 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 433
           ++R  E  +   EM  N   P+ +   + I+        E A+E+ N ++E GI P   +
Sbjct: 319 SRRSKEAMEVLQEMEGNGCPPSIVTYNSLISAYARDGLLEDALELKNQMVEKGIKPDVFT 378

Query: 434 ANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLE 491
              LL G    G+     +  EEM N        T + L K   N  +   M  +F+ ++
Sbjct: 379 YTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFEDIK 438



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/317 (20%), Positives = 127/317 (40%), Gaps = 44/317 (13%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           WN ++ V G+NG   ++    + MK  G V    TF ++  SY   G +D+A+  +  M 
Sbjct: 449 WNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRML 508

Query: 175 MHGVEQDVVAVNSLLSAICRQE--NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
             GV  D+ + N++L+A+ R     Q+ + L  +   +    P+  ++  LL  +     
Sbjct: 509 EAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGR--CKPNELTYCSLLHAYANGKE 566

Query: 233 VE-----------------------------------EANKTFGEMVERFEWNPEHVLAY 257
           +E                                   E  + F E+ +R  ++P+ +   
Sbjct: 567 IERMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETERAFLELRQR-GFSPD-ITTL 624

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317
              +    R + V +A + L  MK     P+L  +++ + +  +  +   + ++   ++ 
Sbjct: 625 NAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMYSRSANFERSEEILREILA 684

Query: 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
            G  + P++I YN VI   C N  + +  R   +M   G  PD +TYN        +   
Sbjct: 685 KG--IRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDIITYNTFIASYAADSMF 742

Query: 378 HEVEKFFHEMIKNEWQP 394
            E       MIK+  +P
Sbjct: 743 VEAIDVVCYMIKHGCKP 759



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 69/359 (19%), Positives = 140/359 (38%), Gaps = 40/359 (11%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G +   + +  ++    K G+ +        M+ +G   ++ TF ++   +   GK+ E
Sbjct: 370 KGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTE 429

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQ--ENQTSRALEFLNRVKKIVDPDGDSFAIL 223
            +  F+ +       D+V  N+LLS   +   +++ S   + + R   +  P+ D+F  L
Sbjct: 430 MMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFV--PERDTFNTL 487

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           +  + + G+ ++A   +  M+E    NP+ + +Y   L  L RG    ++ K L  MK  
Sbjct: 488 ISSYSRCGSFDQAMAVYKRMLEA-GVNPD-LSSYNAVLAALARGGLWKQSEKVLAEMKDG 545

Query: 284 NCFPT-------LKFFSNALDI--LVKLNDSTH-------AVQLWD-IMVGIGFNLM--- 323
            C P        L  ++N  +I  +  L +  +       AV L   ++V    +L+   
Sbjct: 546 RCKPNELTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMET 605

Query: 324 -------------PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
                        P++   NA++ +      V       D M   G  P   TYN +   
Sbjct: 606 ERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYM 665

Query: 371 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
             ++      E+   E++    +P  ++  T I           A  + + + E+G  P
Sbjct: 666 YSRSANFERSEEILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAP 724


>gi|115477950|ref|NP_001062570.1| Os09g0110200 [Oryza sativa Japonica Group]
 gi|46806362|dbj|BAD17538.1| PPR protein-like protein [Oryza sativa Japonica Group]
 gi|46806431|dbj|BAD17588.1| PPR protein-like protein [Oryza sativa Japonica Group]
 gi|113630803|dbj|BAF24484.1| Os09g0110200 [Oryza sativa Japonica Group]
          Length = 794

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 98/421 (23%), Positives = 181/421 (42%), Gaps = 16/421 (3%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAG-----RGQRLSPYAWNLMVDVLGKNGRFEQMWN 134
           TP  V + L  +    +S +  F ++      R + L  +A +L++ +   +   E M++
Sbjct: 66  TPHAVSDALLCAAIPAASRLRLFLFSALSPRLRSRPLHAHAVSLLLRL--SSHADEAMFD 123

Query: 135 AVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC 193
           A+   +  G+  S   FA++  ++  AG++ +AV +F  M            N++L A+ 
Sbjct: 124 ALADARAAGLPASSSAFAALVAAHSSAGRHADAVQAFSRMDEFQSRPTAFVYNTILKALV 183

Query: 194 RQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
                   AL   NR V     P+  ++ +L++G  K+G   +A K F EM++R      
Sbjct: 184 -DSGVILLALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIM--P 240

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
           +V  Y   L +L    ++DEA++ L  MK + C P    ++  L  L K+     A Q  
Sbjct: 241 NVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRL 300

Query: 313 DIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 372
            ++   GF L   L  Y+ +I  L      D  F ++  M+     PD + Y ++     
Sbjct: 301 VMLQDGGFAL--GLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCA 358

Query: 373 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 432
           +  R+ +   F   M K  + P      T + +L D  + E A  + + +L+N ++    
Sbjct: 359 EAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDST 418

Query: 433 SANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSL 490
           +   ++ GL   G + +  +  +EM         +T + L   FY E R    R +F  +
Sbjct: 419 TQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKM 478

Query: 491 E 491
           E
Sbjct: 479 E 479



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 92/386 (23%), Positives = 156/386 (40%), Gaps = 30/386 (7%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N+++D L K G           M + G++ ++  +  +  S C AGK DEAV     M 
Sbjct: 210 YNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMK 269

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG------DSFAILLEGWE 228
             G   D V  N+ LS +C+      R  E   R+  ++  DG        ++ L++G  
Sbjct: 270 DKGCLPDEVTYNAFLSGLCK----VGRVNEAFQRL--VMLQDGGFALGLKGYSCLIDGLF 323

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           +    +E    +  M+ER   +P+ VL Y   +       ++++AL FL VMK +   P 
Sbjct: 324 QARRFDEGFGYYKTMLER-NISPDVVL-YTIMIRGCAEAGRIEDALSFLDVMKKKGFVPD 381

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
              ++  L +L    D   A  L   M  +  NL+ +      +I  LC    VD   + 
Sbjct: 382 TFCYNTVLKVLCDHGDLERAHTLRSEM--LQNNLVLDSTTQTIMICGLCKRGLVDEAMQI 439

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
           FD+M  HG  P  +TYN + +   +  R+ E    FH+M         L        + D
Sbjct: 440 FDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGNNPSLFLRLTLGANQVCD 499

Query: 409 ADEPEI-------------AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 455
           ++                 A ++   I+++G++P   + N L+ GL     L    R  +
Sbjct: 500 SESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFK 559

Query: 456 EMLNRRILIYEVTMHKLKKAFYNESR 481
           E+  + I   E+T   L        R
Sbjct: 560 ELQLKGISPDEITYGTLIDGLLRAHR 585



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 79/348 (22%), Positives = 146/348 (41%), Gaps = 20/348 (5%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDG--VLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           +N  +  L K GR  + +  + VM +DG   L L  ++ + D    A ++DE    +  M
Sbjct: 280 YNAFLSGLCKVGRVNEAFQRL-VMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTM 338

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGN 232
               +  DVV    ++   C +  +   AL FL+ +KK    PD   +  +L+     G+
Sbjct: 339 LERNISPDVVLYTIMIRG-CAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGD 397

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLIT-LIRGKQVDEALKFLRVMKGENCFPTLKF 291
           +E A+    EM++    N       +T +I  L +   VDEA++    M    C PT+  
Sbjct: 398 LERAHTLRSEMLQN---NLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMT 454

Query: 292 FSNALDILVKLNDSTHAVQLWDIM-----------VGIGFNLMPNLIMYNAVIGLLCNND 340
           ++  +D   +      A  L+  M           + +G N + +      ++  +C + 
Sbjct: 455 YNALIDGFYREGRLEEARMLFHKMEMGNNPSLFLRLTLGANQVCDSESLRKLVHDMCQSG 514

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
            V   ++    ++  G  PD +TYN +   L K + +    + F E+      P  +   
Sbjct: 515 QVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYG 574

Query: 401 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
           T I  LL A     A+ ++  IL++G  P  +  N ++  L  + +LS
Sbjct: 575 TLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLS 622



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 72/340 (21%), Positives = 144/340 (42%), Gaps = 19/340 (5%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCG-AGKYDEA 166
           G  L    ++ ++D L +  RF++ +   + M E  +       +I    C  AG+ ++A
Sbjct: 307 GFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDA 366

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
           +   DVM   G   D    N++L  +C   +           ++  +  D  +  I++ G
Sbjct: 367 LSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICG 426

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK----------- 275
             K G V+EA + F EM E    +P  V+ Y   +    R  +++EA             
Sbjct: 427 LCKRGLVDEAMQIFDEMGEH-GCDPT-VMTYNALIDGFYREGRLEEARMLFHKMEMGNNP 484

Query: 276 --FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
             FLR+  G N     +     +  + +      A +L   ++  G  ++P+++ YN +I
Sbjct: 485 SLFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSG--VVPDVVTYNTLI 542

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
             LC   ++D   R F ++   G  PD +TY  + + L++  R ++    F  ++++   
Sbjct: 543 NGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSS 602

Query: 394 PTPLNCATAITMLLDADEPEIAIEIW-NYILENGILPLEA 432
           P+     + +  L    +   AI +W +Y+ +    P+E+
Sbjct: 603 PSLSIYNSMMRSLCRMKKLSQAINLWLDYLPKKYNFPVES 642



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 73/356 (20%), Positives = 149/356 (41%), Gaps = 19/356 (5%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
            +M+  L K G  ++       M E G   ++ T+ ++ D +   G+ +EA M F  M M
Sbjct: 421 TIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEM 480

Query: 176 HGVEQDVVAVNSLLSAICRQEN---------QTSRALEFLNRVKKIVD----PDGDSFAI 222
                  + +    + +C  E+         Q+ + L+    ++ I+D    PD  ++  
Sbjct: 481 GNNPSLFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNT 540

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+ G  K  N++ A + F E+  +   +P+ +  Y T +  L+R  + ++A+   + +  
Sbjct: 541 LINGLCKARNLDGAVRLFKELQLK-GISPDEI-TYGTLIDGLLRAHRENDAMMLFQNILQ 598

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL-MPNLIMYNAVIGLLCNNDD 341
               P+L  +++ +  L ++   + A+ LW   +   +N  + + ++ NA   +   +  
Sbjct: 599 SGSSPSLSIYNSMMRSLCRMKKLSQAINLWLDYLPKKYNFPVESEVLANAHKEI--EDGS 656

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
           +D+  R   ++     +  S  Y +    L + +R  +  + FH + +     TP  CA 
Sbjct: 657 LDDGVRELIKIDQEYGYISSNPYTIWLIGLCQVRRTDDALRIFHTLQEFGIDITPACCAL 716

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
            I  L        A++I  Y L   I+  +   N LL  L    R  D +  A  M
Sbjct: 717 LINYLCWDRNLNAAVDIMLYALSKSIILSQPVGNRLLRWLCICYRRQDAQALAWRM 772


>gi|222616383|gb|EEE52515.1| hypothetical protein OsJ_34721 [Oryza sativa Japonica Group]
          Length = 820

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 95/405 (23%), Positives = 176/405 (43%), Gaps = 19/405 (4%)

Query: 54  RIICEILAHASSDDIESALACTGIIPTPDLVHEVLQL--SYDSPSSAVDFF-RWAGRGQR 110
           R  C++    ++ D   A+   GI     +V  +LQ        S A+ +F ++   G  
Sbjct: 337 RSYCKMGNLINAVDHYEAMVSHGIETNCHIVSYLLQCFRKLGMTSEAIAYFLKFKDSGLH 396

Query: 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT-FASIFDSYCGAGKYDEAVMS 169
           L    +N+ +D   KNG   +    +  MK  G+      +  +   YC  G+   A   
Sbjct: 397 LDKVIYNIAMDTYCKNGNMNEAVKLLNEMKYGGLTPDKIHYTCLISGYCLKGEMQNAQQV 456

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWE 228
           F+ M    +E D+V  N L S  C+         + L+R+  + ++P+  ++ I + G+ 
Sbjct: 457 FEEMLKANIEPDIVTYNILASGFCK-SGLVMEVFDLLDRMADQGLEPNSLTYGIAIVGFC 515

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHV-LAYETFLITLIRGKQVDEA-LKFLRVMKGENCF 286
           + GN+ EA   F  + E+     +H+ + Y + +   +     D A + F+RV +  N  
Sbjct: 516 RGGNLSEAEVLFNVVEEK---GIDHIEVMYSSMVCGYLLSGWTDHAYMLFVRVARQGNLV 572

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346
                 S  ++ L ++ +   A  +  IM  +  +++P++I Y+ +I + C N D+D   
Sbjct: 573 DHFSC-SKLINDLCRVGNVQGASNVCKIM--LEHDVVPDVISYSKLISIYCQNGDMDKAH 629

Query: 347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406
            +F  MV  G   D + Y ++     K  R+ E  + F +M     +P  +    A T+L
Sbjct: 630 LWFHDMVQRGLSVDVIVYTILMNGYCKAGRLQEACQLFVQMTNLGIKPDVI----AYTVL 685

Query: 407 LDADEPEIAIEIWNYIL-ENGILPLEASANELLVGLRNLGRLSDV 450
           LD    E   + W  I  E     L A+ N+LL  ++++    DV
Sbjct: 686 LDGHLKETLQQGWEGIAKERRSFLLRANHNKLLSSMKDMQIEPDV 730



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 83/387 (21%), Positives = 149/387 (38%), Gaps = 44/387 (11%)

Query: 92  YDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMK----------- 140
           YD  ++   F      G   S + WNL++  + + G +E +  A   MK           
Sbjct: 168 YDVQATICLFSGICRLGVVPSVWTWNLLLKFIAETGEYEMVLAAYNEMKCFQLTPDVYTF 227

Query: 141 ------------------------EDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
                                   E GV      ++S     C  GKYD A +    ++ 
Sbjct: 228 AIVTRSLFQAKKVDEALQVWAEMTEMGVKPDARGYSSFLIGLCDCGKYDLAYVILQEINR 287

Query: 176 HGVEQDVVAVNSLLSAICRQE--NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
             V  + +A N ++  +C++   ++  + LE  N+ ++  +PD   ++ L+  + K GN+
Sbjct: 288 EKVPVEAMAYNMVMDGLCKEMRLDEAEKLLE--NKARQGSNPDVYGYSYLIRSYCKMGNL 345

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
             A   +  MV        H+++Y   L    +     EA+ +    K          ++
Sbjct: 346 INAVDHYEAMVSHGIETNCHIVSY--LLQCFRKLGMTSEAIAYFLKFKDSGLHLDKVIYN 403

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
            A+D   K  +   AV+L + M   G  L P+ I Y  +I   C   ++ N  + F++M+
Sbjct: 404 IAMDTYCKNGNMNEAVKLLNEMKYGG--LTPDKIHYTCLISGYCLKGEMQNAQQVFEEML 461

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
                PD +TYN++     K+  V EV      M     +P  L    AI          
Sbjct: 462 KANIEPDIVTYNILASGFCKSGLVMEVFDLLDRMADQGLEPNSLTYGIAIVGFCRGGNLS 521

Query: 414 IAIEIWNYILENGILPLEASANELLVG 440
            A  ++N + E GI  +E   + ++ G
Sbjct: 522 EAEVLFNVVEEKGIDHIEVMYSSMVCG 548



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 116/259 (44%), Gaps = 20/259 (7%)

Query: 136 VRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
           VRV ++  ++   + + + +  C  G    A     +M  H V  DV++ + L+S  C+ 
Sbjct: 563 VRVARQGNLVDHFSCSKLINDLCRVGNVQGASNVCKIMLEHDVVPDVISYSKLISIYCQN 622

Query: 196 ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
            +     L F + V++ +  D   + IL+ G+ K G ++EA + F +M       P+ V+
Sbjct: 623 GDMDKAHLWFHDMVQRGLSVDVIVYTILMNGYCKAGRLQEACQLFVQMT-NLGIKPD-VI 680

Query: 256 AYETFLI-----TLIRG-----KQVDEAL------KFLRVMKGENCFPTLKFFSNALDIL 299
           AY   L      TL +G     K+    L      K L  MK     P +  ++  +D  
Sbjct: 681 AYTVLLDGHLKETLQQGWEGIAKERRSFLLRANHNKLLSSMKDMQIEPDVPCYTVLIDGK 740

Query: 300 VKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFP 359
            K      A +L+D M+  G  L P+   Y A+I   C+  ++        +M+  G  P
Sbjct: 741 CKAEYLVEARELFDEMLQKG--LTPDAYAYTALINGYCSQGEISKAEDLLQEMIDKGIEP 798

Query: 360 DSLTYNMIFECLIKNKRVH 378
           D LT++++ +  ++++++ 
Sbjct: 799 DELTFSVLNQSSLRSRKIQ 817


>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Glycine max]
          Length = 852

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 146/342 (42%), Gaps = 9/342 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ S+ D+ C  G  +EA      M   GV  ++V   +LL  +C           F   
Sbjct: 393 TYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGAL 452

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           +K     +   +  L  G+ K   +E+A     EM ++    P+ +L Y T +  L R  
Sbjct: 453 LKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKK-NLKPD-LLLYGTKIWGLCRQN 510

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           ++++++  +R M           ++  +D   K+  +T AV L   M  +G  +   ++ 
Sbjct: 511 EIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKI--TVVT 568

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           Y  +I  LC    V    R+FD M  +G  P+ + Y  + + L KN  + E +  F+EM+
Sbjct: 569 YGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEML 628

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
                P  L   + I   +    P  A+ + N ++E G+     +   L+ G    G++ 
Sbjct: 629 DKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVEIGMELDLCAYTSLIWGFSRYGQVQ 688

Query: 449 DVRRFAEEMLNRRILIYEVTMHKLKKAFY-----NESRSMRD 485
             +   +EML + I+  +V    L + +Y     NE+ ++ D
Sbjct: 689 LAKSLLDEMLRKGIIPDQVLCICLLRKYYELGDINEALALHD 730



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 100/452 (22%), Positives = 189/452 (41%), Gaps = 46/452 (10%)

Query: 77  IIPTPDLVHEVL-QLSYDSPSS-AVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMW 133
           ++P     +E+L +LS  S    A+ FF+     G   S + +N+++  L + G  E   
Sbjct: 212 VLPKVRSCNELLHRLSKSSKGGLALSFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAAR 271

Query: 134 NAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI 192
           +    MK  G+   + T+ S+ D Y   G    AV  F+ M   G E DV+  NSL++  
Sbjct: 272 SLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCF 331

Query: 193 CRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           C+ E +  +A E+L+ +K + + P+  +++ L++ + K G + EANK F +M+ R    P
Sbjct: 332 CKFE-RIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMI-RVGLQP 389

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
                Y + +    +   ++EA K    M+       +  ++  LD L +      A +L
Sbjct: 390 NE-FTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEEL 448

Query: 312 WDIMVGIGF---------------------------------NLMPNLIMYNAVIGLLCN 338
           +  ++  G+                                 NL P+L++Y   I  LC 
Sbjct: 449 FGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCR 508

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
            +++++      +M+  G   +S  Y  + +   K  +  E      EM     + T + 
Sbjct: 509 QNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVT 568

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
               I  L      + A+  ++++  NG+ P       L+ GL     L + +    EML
Sbjct: 569 YGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEML 628

Query: 459 NRRI----LIYEVTM-HKLKKAFYNESRSMRD 485
           ++ I    L+Y   +   +K     E+ S+R+
Sbjct: 629 DKGISPDKLVYTSLIDGNMKHGNPGEALSLRN 660



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 117/283 (41%), Gaps = 5/283 (1%)

Query: 203 LEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI 262
            + L   + +  P    F  L       G +EEA + F +M  +F   P+ V +    L 
Sbjct: 167 FDMLWSTRNVCRPGFGVFDTLFNVLVDLGMLEEARQCFWKM-NKFRVLPK-VRSCNELLH 224

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL 322
            L +  +   AL F + M      P++  ++  +  L +  D   A  L++ M   G  L
Sbjct: 225 RLSKSSKGGLALSFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKG--L 282

Query: 323 MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
            P+++ YN++I        +      F++M   G  PD +TYN +  C  K +R+ +  +
Sbjct: 283 RPDIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFE 342

Query: 383 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 442
           + H M +   QP  +  +T I     A     A + +  ++  G+ P E +   L+    
Sbjct: 343 YLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANC 402

Query: 443 NLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRD 485
            +G L++  +   EM    + +  VT   L      + R MR+
Sbjct: 403 KIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGR-MRE 444



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 93/215 (43%), Gaps = 5/215 (2%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEA 166
           G   + Y +  ++D   K G+  +  N ++ M++ G+ +++ T+  + D  C  G   +A
Sbjct: 526 GLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQA 585

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
           V  FD M+ +G++ +++   +L+  +C+ +        F   + K + PD   +  L++G
Sbjct: 586 VRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDG 645

Query: 227 WEKEGNVEEANKTFGEMVE-RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
             K GN  EA      MVE   E +   + AY + +    R  QV  A   L  M  +  
Sbjct: 646 NMKHGNPGEALSLRNRMVEIGMELD---LCAYTSLIWGFSRYGQVQLAKSLLDEMLRKGI 702

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF 320
            P        L    +L D   A+ L D M   G 
Sbjct: 703 IPDQVLCICLLRKYYELGDINEALALHDDMARRGL 737


>gi|242093812|ref|XP_002437396.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
 gi|241915619|gb|EER88763.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
          Length = 786

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 124/300 (41%), Gaps = 7/300 (2%)

Query: 98  AVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMK--EDGVLSLPTFASIFD 155
           A+   RWAG        A  ++V  LG+ G+ + +   +  M       L +  + ++  
Sbjct: 122 ALALLRWAGAEGAADASALEMVVRALGREGQHDAVCALLDEMPLPPGSRLDVRAYTTVLH 181

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VD 214
           +   AG+Y+ AV  F  +   GV   +V  N +L    R      R +  L+ ++   V+
Sbjct: 182 ALSRAGRYERAVELFAELRRQGVAPTLVTYNVVLDVYGRMGRSWPRIVALLDEMRAAGVE 241

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           PD  + + ++    ++G V+EA   F ++  R   +   V+ Y   L    +     EAL
Sbjct: 242 PDDFTASTVIAACCRDGLVDEAVAFFEDLKAR--GHTPCVVTYNALLQVFGKAGNYTEAL 299

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
           + L+ M+ + C P    ++       +      A +  D M   G  L+PN   YN V+ 
Sbjct: 300 RVLKEMEQDGCQPDAVTYNELAGTYARAGFYEEAAKCLDTMTSKG--LLPNAFTYNTVMT 357

Query: 335 LLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
              N   VD     FDQM   G  P+  TYN I   L K  R   + +   EM ++   P
Sbjct: 358 AYGNIGKVDEALALFDQMKKSGCVPNVNTYNFILGMLGKKSRFTVMLEMLGEMSRSGCTP 417



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 76/344 (22%), Positives = 154/344 (44%), Gaps = 7/344 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           WN M+ V GK G  + +   +  MK  GV LS  T+ ++  +Y   G    A   ++ M+
Sbjct: 422 WNTMLAVCGKRGMEDYVTRVLEGMKSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMT 481

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNV 233
             G    +   N+LL+ + RQ +  S A   +++++ K   P+  S+++LL+ + K GN+
Sbjct: 482 SAGFAPCLTTYNALLNVLSRQGDW-STAQSIVSKMRTKGFKPNDQSYSLLLQCYAKGGNI 540

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
              +    E+     + P  V+   T +I   + +++    K  + +K     P L  F+
Sbjct: 541 AGIDAIEKEVYGGTVF-PSWVI-LRTLVIANFKCRRLGGIEKAFQEVKARGYNPDLVIFN 598

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
           + L +  K    +   +++D +   G  L P+LI YN+++ +     +     +  +Q+ 
Sbjct: 599 SMLSMYAKNGMYSKVTEIFDSIKQSG--LSPDLITYNSLMDMYAKCSESWEAEKILNQLK 656

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
                PD ++YN +     K   + E ++   EMI +   P  +   T +      +   
Sbjct: 657 SSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFS 716

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
            A E+ NY++++ + P+E +   ++       R  + R F  E+
Sbjct: 717 EAREVINYMIQHNLKPMELTYRRVVDSYCKAKRFEEARSFLSEV 760


>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
          Length = 1060

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 144/355 (40%), Gaps = 8/355 (2%)

Query: 110 RLSPYAWNLMVDVLGKNGRFEQ-MWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVM 168
           + +P  + +++    + G  E+ +W      K D + ++     + D     G++D    
Sbjct: 123 KFTPNVFGVLIIAFSEMGLVEEALW---VYYKMDVLPAMQACNMVLDGLVKKGRFDTMWK 179

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
            +  M   G   +VV   +L+   CRQ +       F   ++K + P    + IL+ G  
Sbjct: 180 VYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLC 239

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
            E  + EA   F  M  R      ++  Y T +    +   V +AL+    M G+   P 
Sbjct: 240 GESRISEAESMFRTM--RNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPN 297

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
           +  F   +D L K ++   A +    M    F ++PN+ +YN +I   C   ++      
Sbjct: 298 VVTFGILIDGLCKTDEMVSARKFLIDMAS--FGVVPNIFVYNCLIDGYCKAGNLSEALSL 355

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
             ++  H   PD  TY+++ + L    R+ E +    EM K  + P  +   T I     
Sbjct: 356 HSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCK 415

Query: 409 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
               E AIE+ + + E GI P   + + L+ G    G++        EM+ + +L
Sbjct: 416 EGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLL 470



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/344 (21%), Positives = 152/344 (44%), Gaps = 5/344 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           A N+++D L K GRF+ MW     M   G   ++ T+ ++ D  C  G + +A   FD M
Sbjct: 160 ACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEM 219

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
               +   VV    L+  +C +   +     F       + P+  ++  +++G+ K  +V
Sbjct: 220 IEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHV 279

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           ++A + + EM+   +    +V+ +   +  L +  ++  A KFL  M      P +  ++
Sbjct: 280 KKALELYXEMLG--DGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYN 337

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +D   K  + + A+ L   +      ++P++  Y+ +I  LC  D ++       +M 
Sbjct: 338 CLIDGYCKAGNLSEALSLHSEIEK--HEILPDVFTYSILIKGLCGVDRMEEADGLLQEMK 395

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G  P+++TYN + +   K   + +  +   +M +   +P  +  +T I     A + E
Sbjct: 396 KKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKME 455

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
            A+ ++  ++  G+LP   +   L+ G    G   +  R  +EM
Sbjct: 456 AAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEM 499



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 75/344 (21%), Positives = 138/344 (40%), Gaps = 62/344 (18%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +++++  L    R E+    ++ MK+ G L +  T+ ++ D YC  G  ++A+     
Sbjct: 369 FTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQ 428

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M+  G+E +++  ++L+   C+     +    +   V K + PD  ++  L++G  K+GN
Sbjct: 429 MTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGN 488

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
            +EA +   EM E    +P +V      +  L +  ++ +A+K      G +   T    
Sbjct: 489 TKEAFRLHKEMQEA-GLHP-NVFTLSCLIDGLCKDGRISDAIKLFLAKTGTD---TTGSK 543

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +N LD  +                       PN +MY A+I  LC +  +    +FF  M
Sbjct: 544 TNELDRSL---------------------CSPNHVMYTALIQGLCTDGRIFKASKFFSDM 582

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
              G  PD      +F C++              +I+  ++   L       M+L AD  
Sbjct: 583 RCSGLRPD------VFTCIV--------------IIQGHFRAMHLR----DVMMLQAD-- 616

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 456
                    IL+ GI+P  +    L  G    G L     F  E
Sbjct: 617 ---------ILKMGIIPNSSVYRVLAKGYEESGYLKSALSFCGE 651



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 77/378 (20%), Positives = 151/378 (39%), Gaps = 47/378 (12%)

Query: 108 GQRLSPYAWNLMVDV---LGKNGRFEQMWNAVRVMK--EDGVLSLPTFASIFDSYCGAGK 162
           G +L   A  LM D+   L K+ R     +   V+   E    +   F  +  ++   G 
Sbjct: 82  GAKLYAKARCLMRDLIQCLQKSRRSRICCSVFNVLSRLESSKFTPNVFGVLIIAFSEMGL 141

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
            +EA+  +  M +    Q   A N +L  + ++    +    + + V +   P+  ++  
Sbjct: 142 VEEALWVYYKMDVLPAMQ---ACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGT 198

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L++G  ++G+  +A + F EM+E+  +    V+ Y   +  L    ++ EA    R M+ 
Sbjct: 199 LIDGCCRQGDFLKAFRLFDEMIEKKIFPT--VVIYTILIRGLCGESRISEAESMFRTMRN 256

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
               P L  ++  +D   K+     A++L+  M+G G  L+PN++ +  +I  LC  D++
Sbjct: 257 SGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLGDG--LLPNVVTFGILIDGLCKTDEM 314

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
            +  +F   M   G  P+   YN + +   K   + E      E+ K+E  P        
Sbjct: 315 VSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILP-------- 366

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
                         +++ Y +             L+ GL  + R+ +     +EM  +  
Sbjct: 367 --------------DVFTYSI-------------LIKGLCGVDRMEEADGLLQEMKKKGF 399

Query: 463 LIYEVTMHKLKKAFYNES 480
           L   VT + L   +  E 
Sbjct: 400 LPNAVTYNTLIDGYCKEG 417


>gi|115487378|ref|NP_001066176.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|77553036|gb|ABA95832.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113648683|dbj|BAF29195.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|125535802|gb|EAY82290.1| hypothetical protein OsI_37500 [Oryza sativa Indica Group]
 gi|125578525|gb|EAZ19671.1| hypothetical protein OsJ_35247 [Oryza sativa Japonica Group]
          Length = 716

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 89/372 (23%), Positives = 150/372 (40%), Gaps = 6/372 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++  + ++G  E        M+  G+L  L T+ S+ + YC AG   EA+  F  + 
Sbjct: 340 YNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLK 399

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G+   V+  N LL   CR  +           V++   PD  ++ IL+ G  K  N+ 
Sbjct: 400 RAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMNGSRKVRNLA 459

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
              + F EM+ +    P+   AY T +   +      EA +   VM           ++ 
Sbjct: 460 MVREFFDEMLSK-GLQPD-CFAYNTRISAELILGSTSEAFQLTEVMISRGISSDTVTYNI 517

Query: 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
            LD L K  +   A  LW  MV  G  L P+ I Y  +I   C    +      FD M+ 
Sbjct: 518 FLDGLCKSGNLKDAYVLWMKMVSDG--LQPDCITYTCLIHAHCERGRLREARDIFDGMLV 575

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 414
            G  P ++TY +      +   ++    +F +M++   +P  +     I  L       +
Sbjct: 576 SGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCRMGRTNL 635

Query: 415 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKK 474
           A + ++ +LE G+ P + +   L+ G    G   +  R   EM    I     T + L K
Sbjct: 636 AYQHFHEMLERGLSPNKYTYTLLIDGNCKEGNWEEAIRLYSEMHQHGIHPDHCTHNALFK 695

Query: 475 AFYNESRSMRDI 486
            F +E +S   I
Sbjct: 696 GF-DEGQSKHAI 706



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/380 (22%), Positives = 156/380 (41%), Gaps = 39/380 (10%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
           +N++++ L + G  E+    V  M+     S  TF  +   Y   G  ++A      M  
Sbjct: 271 YNVVINGLARKGELEKAAQLVDRMRMSKKASAFTFNPLITGYFARGSVEKAGALQLEMEN 330

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEE 235
            G+   VV  N+++  + R  N  +  ++F+      + PD  ++  L+ G+ K GN++E
Sbjct: 331 EGIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKE 390

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL------ 289
           A   FG++ +R    P  VL Y   L    R   ++EA +F + M  + C P +      
Sbjct: 391 ALWLFGDL-KRAGLAPS-VLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTIL 448

Query: 290 --------------KFFSNALDILVK---------------LNDSTHAVQLWDIMVGIGF 320
                         +FF   L   ++               L  ++ A QL ++M+  G 
Sbjct: 449 MNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMISRGI 508

Query: 321 NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEV 380
           +   + + YN  +  LC + ++ + +  + +MV  G  PD +TY  +     +  R+ E 
Sbjct: 509 S--SDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREA 566

Query: 381 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 440
              F  M+ +   P+ +     I           A   +  +LE G+ P E + N L+  
Sbjct: 567 RDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHA 626

Query: 441 LRNLGRLSDVRRFAEEMLNR 460
           L  +GR +   +   EML R
Sbjct: 627 LCRMGRTNLAYQHFHEMLER 646



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 91/382 (23%), Positives = 163/382 (42%), Gaps = 16/382 (4%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
           NL++  L    R++ M +    M + G+  S+ T+ ++ DS+   G+ D+A      M  
Sbjct: 200 NLVLRALRDEARWDDMRSVYAEMLQLGIEPSIVTYNTLLDSFFREGRVDQAAKLLREMEA 259

Query: 176 H--GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G     V  N +++ + R+  +  +A + ++R++        +F  L+ G+   G+V
Sbjct: 260 RPGGCLPSDVTYNVVINGLARK-GELEKAAQLVDRMRMSKKASAFTFNPLITGYFARGSV 318

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA-LKFLRVMKGENCFPTLKFF 292
           E+A     EM    E     V+ Y T +  + R   V+ A +KF+  M+     P L  +
Sbjct: 319 EKAGALQLEMEN--EGIVPTVVTYNTIIHGMFRSGNVEAARMKFVE-MRAMGLLPDLITY 375

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           ++ ++   K  +   A+ L+  +   G  L P+++ YN ++   C   D++   RF  +M
Sbjct: 376 NSLINGYCKAGNLKEALWLFGDLKRAG--LAPSVLTYNILLDGYCRLGDLEEARRFKQEM 433

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
           V  G  PD  TY ++     K + +  V +FF EM+    QP      T I+  L     
Sbjct: 434 VEQGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGST 493

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR----RFAEEMLNRRILIYEVT 468
             A ++   ++  GI     + N  L GL   G L D      +   + L    + Y   
Sbjct: 494 SEAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCL 553

Query: 469 MHKLKKAFYNESRSMRDIFDSL 490
           +H          R  RDIFD +
Sbjct: 554 IH--AHCERGRLREARDIFDGM 573



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 50/221 (22%), Positives = 89/221 (40%), Gaps = 4/221 (1%)

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSF 220
           G   EA    +VM   G+  D V  N  L  +C+  N     + ++  V   + PD  ++
Sbjct: 491 GSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITY 550

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
             L+    + G + EA   F  M+      P   + Y  F+    R   +  A  + + M
Sbjct: 551 TCLIHAHCERGRLREARDIFDGML--VSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKM 608

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
             E   P    ++  +  L ++  +  A Q +  M+  G  L PN   Y  +I   C   
Sbjct: 609 LEEGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEMLERG--LSPNKYTYTLLIDGNCKEG 666

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 381
           + +   R + +M  HG  PD  T+N +F+   + +  H ++
Sbjct: 667 NWEEAIRLYSEMHQHGIHPDHCTHNALFKGFDEGQSKHAIQ 707


>gi|90657590|gb|ABD96889.1| hypothetical protein [Cleome spinosa]
          Length = 719

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 88/378 (23%), Positives = 141/378 (37%), Gaps = 49/378 (12%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCG 159
           +F    +G + + Y +N M+    K+G FE+       M   G   +  T   I    C 
Sbjct: 356 WFEMMDKGMQPNAYTYNTMLHGSLKSGDFERACELYNEMCNKGYGTTTVTCNKIISELCS 415

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
            GK DEA   F  MS  G++ D +  NSL+   C                          
Sbjct: 416 RGKSDEAFEVFKKMSETGIQADAITYNSLIRGFC-------------------------- 449

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPE-HVLAYETFLITLIRGKQVDEALKFLR 278
                    KEG V+E      E+V +   +P+  V  YE  +I   +    + A + L 
Sbjct: 450 ---------KEGKVDERMNLLNELVAQ---DPQPSVSLYELLIIKSCKDGDFEAAKRLLG 497

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            M  +   P    +   L   +K  D  H  +L++     G+         N +I  LC+
Sbjct: 498 DMSSKGLHPNAYTYDTMLHGSLKSGDFEHVRELYNETCNKGYG--TTTATCNKIISELCS 555

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
               D     F +M   G   D++TYN +     K  +V +     +E++    QP+  +
Sbjct: 556 RGKSDEASEMFKKMSETGIKADAITYNSLIRGFCKEGKVGKSMNLLNELVAQGLQPSASS 615

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
            A+ I  L    + E A  +W  ++  GI P       L+ GL   GR       A E +
Sbjct: 616 YASLIIQLCQNGDAESAKRLWGDMVSKGIEPHANLREHLISGLCKQGR-------ATEGM 668

Query: 459 NRRILIYEVTMHKLKKAF 476
           +R + + E  +   K AF
Sbjct: 669 DRLMGMLENKIKPKKAAF 686



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/373 (20%), Positives = 151/373 (40%), Gaps = 26/373 (6%)

Query: 98  AVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRV----MKEDGVLSLPTFASI 153
           ++ FF+W       +P       D +  N  FE + +A  V    M  D    +P  AS+
Sbjct: 107 SLRFFQWLCTNHDCTP-------DPISSNMLFEALLDAKAVRAAKMVRDIAGFIPDSASL 159

Query: 154 ---FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK 210
                  CG G  +EA+  +  +   G+   +VA NS+LS  C +  +T    EF   + 
Sbjct: 160 EQYVKCLCGVGFIEEAIEVYFQLKEAGIRISIVACNSILSG-CLKAGKTELLFEFYQEMI 218

Query: 211 KI---VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF--EWNPEHVLAYETFLITLI 265
           K     D + ++   L++ +   G V    +   + ++      NP     Y   +    
Sbjct: 219 KAGTASDANTETVGCLIQAFCDSGQVARGYELLNQFLKTGLDPGNP----TYNKLIAGFC 274

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN 325
           + K      + L  M   N  PT+  +   ++ L K  +   A ++++ +   G+   P+
Sbjct: 275 QAKNYASMSEVLHTMIARNHLPTIYTYQEIINGLCKNEECLEAYRVFNDLKDRGY--APD 332

Query: 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 385
            +MY  +I  LC         + + +M+  G  P++ TYN +    +K+       + ++
Sbjct: 333 RVMYTTMIHGLCEMGSFGEARKLWFEMMDKGMQPNAYTYNTMLHGSLKSGDFERACELYN 392

Query: 386 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
           EM    +  T + C   I+ L    + + A E++  + E GI     + N L+ G    G
Sbjct: 393 EMCNKGYGTTTVTCNKIISELCSRGKSDEAFEVFKKMSETGIQADAITYNSLIRGFCKEG 452

Query: 446 RLSDVRRFAEEML 458
           ++ +      E++
Sbjct: 453 KVDERMNLLNELV 465


>gi|124360736|gb|ABN08713.1| Pentatricopeptide repeat [Medicago truncatula]
          Length = 479

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 83/344 (24%), Positives = 145/344 (42%), Gaps = 16/344 (4%)

Query: 127 GRFEQMWNAVRVM-KEDGVLSLPT---FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDV 182
           GR  +  +A+RV  K +     PT   + ++FD          A+  +  M   G+   V
Sbjct: 96  GRVHRPLDAIRVFHKMEDFQVKPTQKSYLTVFDILVEENHVKRAIGFYKEMREKGIPPTV 155

Query: 183 VAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFG 241
           V++N L+ A+C+ E     A      +  +   PD  ++  L+ G  K G + +A +   
Sbjct: 156 VSLNILIKALCKNEETVESAFRLFREMPNRGCQPDSYTYGTLINGLCKLGKISQAKELLD 215

Query: 242 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
           EM E+   +P  V++Y + +  L +   +DEA++ L  M      P +  +S+ +D L K
Sbjct: 216 EMEEK-GLSPS-VVSYTSLIHGLCQSNNLDEAIELLEEMIINGIEPNVFTYSSLMDGLCK 273

Query: 302 LNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS 361
              S+ A++L ++MV     L+PN++ Y+ +I  LC            D+M   G  PD+
Sbjct: 274 SGHSSQAMELLEVMV--RRRLLPNMVTYSTLINGLCKEGKHREAVEILDRMRLQGLKPDA 331

Query: 362 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM-------LLDADEPEI 414
             Y  I   L       E   F  EM      P   +    + M       L +  +P  
Sbjct: 332 GMYGRIISGLCAACNYQEAANFIDEMALGGISPNRASWTFHVKMHNMVVQGLCNNVDPTR 391

Query: 415 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
           A +++  +   GI     + + L+      G L+   R  EEM+
Sbjct: 392 AFQLYLSMRTRGISVEIGTFDCLVKCFCKRGDLNKAARILEEMI 435



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 146/330 (44%), Gaps = 18/330 (5%)

Query: 76  GIIPTP---DLVHEVLQLSYDSPSSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQ 131
           GI PT    +++ + L  + ++  SA   FR    RG +   Y +  +++ L K G+  Q
Sbjct: 150 GIPPTVVSLNILIKALCKNEETVESAFRLFREMPNRGCQPDSYTYGTLINGLCKLGKISQ 209

Query: 132 MWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS 190
               +  M+E G+  S+ ++ S+    C +   DEA+   + M ++G+E +V   +SL+ 
Sbjct: 210 AKELLDEMEEKGLSPSVVSYTSLIHGLCQSNNLDEAIELLEEMIINGIEPNVFTYSSLMD 269

Query: 191 AICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW 249
            +C+    +S+A+E L   V++ + P+  +++ L+ G  KEG   EA +    M  R + 
Sbjct: 270 GLCKS-GHSSQAMELLEVMVRRRLLPNMVTYSTLINGLCKEGKHREAVEILDRM--RLQG 326

Query: 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT-------LKFFSNALDILVKL 302
                  Y   +  L       EA  F+  M      P        +K  +  +  L   
Sbjct: 327 LKPDAGMYGRIISGLCAACNYQEAANFIDEMALGGISPNRASWTFHVKMHNMVVQGLCNN 386

Query: 303 NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSL 362
            D T A QL+  M   G ++   +  ++ ++   C   D++   R  ++M+  G  PD  
Sbjct: 387 VDPTRAFQLYLSMRTRGISV--EIGTFDCLVKCFCKRGDLNKAARILEEMILDGCIPDEG 444

Query: 363 TYNMIFECLIKNKRVHEVEKFFHEMIKNEW 392
            +N++   L   K+V E  +     +K ++
Sbjct: 445 MWNVLMCGLWDRKKVRETTELLVAELKQKF 474



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 122/273 (44%), Gaps = 22/273 (8%)

Query: 239 TFGEMVERF----EWNP----------EHVLAYETFLITLIRG-KQVDEALKFLRV---M 280
           TFG M+ R     ++ P          E     E   +T+ RG  +V   L  +RV   M
Sbjct: 52  TFGAMIHRLVSVNQFRPAEGMLERMKQEDCEVTEDVFLTICRGYGRVHRPLDAIRVFHKM 111

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
           +     PT K +    DILV+ N    A+  +  M   G  + P ++  N +I  LC N+
Sbjct: 112 EDFQVKPTQKSYLTVFDILVEENHVKRAIGFYKEMREKG--IPPTVVSLNILIKALCKNE 169

Query: 341 D-VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
           + V++ FR F +M   G  PDS TY  +   L K  ++ + ++   EM +    P+ ++ 
Sbjct: 170 ETVESAFRLFREMPNRGCQPDSYTYGTLINGLCKLGKISQAKELLDEMEEKGLSPSVVSY 229

Query: 400 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
            + I  L  ++  + AIE+   ++ NGI P   + + L+ GL   G  S      E M+ 
Sbjct: 230 TSLIHGLCQSNNLDEAIELLEEMIINGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVR 289

Query: 460 RRILIYEVTMHKLKKAFYNESRSMRDIFDSLER 492
           RR+L   VT   L      E +  R+  + L+R
Sbjct: 290 RRLLPNMVTYSTLINGLCKEGKH-REAVEILDR 321



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/305 (21%), Positives = 130/305 (42%), Gaps = 15/305 (4%)

Query: 179 EQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI----VDPDGDSFAILLEGWEKEGNVE 234
           ++D      +   ICR   +  R L+ +    K+    V P   S+  + +   +E +V+
Sbjct: 78  QEDCEVTEDVFLTICRGYGRVHRPLDAIRVFHKMEDFQVKPTQKSYLTVFDILVEENHVK 137

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ-VDEALKFLRVMKGENCFPTLKFFS 293
            A   + EM E+    P  V++    +  L + ++ V+ A +  R M    C P    + 
Sbjct: 138 RAIGFYKEMREK--GIPPTVVSLNILIKALCKNEETVESAFRLFREMPNRGCQPDSYTYG 195

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             ++ L KL   + A +L D M   G  L P+++ Y ++I  LC ++++D      ++M+
Sbjct: 196 TLINGLCKLGKISQAKELLDEMEEKG--LSPSVVSYTSLIHGLCQSNNLDEAIELLEEMI 253

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
            +G  P+  TY+ + + L K+    +  +    M++    P  +  +T I  L    +  
Sbjct: 254 INGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRLLPNMVTYSTLINGLCKEGKHR 313

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML------NRRILIYEV 467
            A+EI + +   G+ P       ++ GL       +   F +EM       NR    + V
Sbjct: 314 EAVEILDRMRLQGLKPDAGMYGRIISGLCAACNYQEAANFIDEMALGGISPNRASWTFHV 373

Query: 468 TMHKL 472
            MH +
Sbjct: 374 KMHNM 378


>gi|15237575|ref|NP_198933.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75309191|sp|Q9FLL3.1|PP412_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g41170, mitochondrial; Flags: Precursor
 gi|9759163|dbj|BAB09719.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|66792708|gb|AAY56456.1| At5g41170 [Arabidopsis thaliana]
 gi|332007267|gb|AED94650.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 527

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 88/363 (24%), Positives = 159/363 (43%), Gaps = 14/363 (3%)

Query: 119 MVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           +++V+ K  +F+ + N    ++  GV   L T   + + +C + +   A      M   G
Sbjct: 78  LLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLG 137

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEA 236
            E D+V   SL++  C   N+   A+  +N++ ++ + PD   +  +++   K G+V  A
Sbjct: 138 FEPDIVTFTSLINGFCLG-NRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYA 196

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
              F +M E +   P+ V+ Y + +  L    +  +A   LR M      P +  F+  +
Sbjct: 197 LSLFDQM-ENYGIRPD-VVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALI 254

Query: 297 DILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG 356
           D  VK      A +L++ M  I  ++ PN+  Y ++I   C    VD   + F  M   G
Sbjct: 255 DAFVKEGKFLDAEELYNEM--IRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKG 312

Query: 357 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 416
            FPD + Y  +     K K+V +  K F+EM +       +   T I       +P +A 
Sbjct: 313 CFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQ 372

Query: 417 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR-------ILIYEVTM 469
           E++++++  G+ P   + N LL  L   G++       E+M  R        I  Y V +
Sbjct: 373 EVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLL 432

Query: 470 HKL 472
           H L
Sbjct: 433 HGL 435



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 61/279 (21%), Positives = 115/279 (41%), Gaps = 12/279 (4%)

Query: 115 AWNLMVDVLGKNGRF---EQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
            +N ++D   K G+F   E+++N   +++     ++ T+ S+ + +C  G  DEA   F 
Sbjct: 249 TFNALIDAFVKEGKFLDAEELYN--EMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFY 306

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
           +M   G   DVVA  SL++  C+ +        F    +K +  +  ++  L++G+ + G
Sbjct: 307 LMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVG 366

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG---ENCFPT 288
               A + F  MV R    P ++  Y   L  L    +V +AL     M+    +   P 
Sbjct: 367 KPNVAQEVFSHMVSR--GVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPN 424

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
           +  ++  L  L        A+ +++ M     ++         +I  +C    V N    
Sbjct: 425 IWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYT--IIIQGMCKAGKVKNAVNL 482

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
           F  +   G  P+ +TY  +   L +    HE    F +M
Sbjct: 483 FCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKM 521



 Score = 38.9 bits (89), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 36/174 (20%), Positives = 75/174 (43%), Gaps = 17/174 (9%)

Query: 76  GIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNA 135
           G +  P++  EV             F     RG   +   +N+++  L  NG+ ++    
Sbjct: 363 GQVGKPNVAQEV-------------FSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMI 409

Query: 136 VRVMKE---DGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              M++   DGV  ++ T+  +    C  GK ++A+M F+ M    ++  ++    ++  
Sbjct: 410 FEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQG 469

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245
           +C+     +    F +   K V P+  ++  ++ G  +EG   EA+  F +M E
Sbjct: 470 MCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMKE 523


>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 686

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 151/359 (42%), Gaps = 22/359 (6%)

Query: 132 MWNAVRVMKEDGVLSLP-------------TFASIFDSYCGAGKYDEAVMSFDVMSMHGV 178
           M   VR+ + D V+SL              +F  +   +C   K   A+ +F  ++  G+
Sbjct: 88  MGAVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGL 147

Query: 179 EQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANK 238
             DVV   +LL  +C  +++ S AL+  +++ +   PD  +F  L+ G  +EG V EA  
Sbjct: 148 HPDVVTFTTLLHGLC-LDHRVSEALDLFHQICR---PDVLTFTTLMNGLCREGRVVEAVA 203

Query: 239 TFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG-ENCFPTLKFFSNALD 297
               MVE     P+ +  Y TF+  + +      AL  LR M+   +  P +  +S  +D
Sbjct: 204 LLDRMVEN-GLQPDQI-TYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIID 261

Query: 298 ILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGA 357
            L K    + +  L+  M   G  + PN++ YN +IG  C +       R   +M+    
Sbjct: 262 GLCKDGRHSDSHNLFIEMQDKG--IFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKI 319

Query: 358 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 417
            P+ +TYN +    +K  +  E  + + EM+     P  +   + I      D  + A +
Sbjct: 320 SPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAED 379

Query: 418 IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
           ++  +   G  P   +   L+ G     R+ D      EM  R ++   VT + L   F
Sbjct: 380 MFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGF 438



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 74/382 (19%), Positives = 157/382 (41%), Gaps = 12/382 (3%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N M+     +GR+      ++ M E  +  ++ T+ ++ +++   GK+ EA   +D M
Sbjct: 290 TYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEM 349

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G+  + +  NS++   C+Q+   +    F     K   PD  +F  L++G+     +
Sbjct: 350 LPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRI 409

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           ++  +   EM  R      + + Y T +        ++ AL   + M      P +   +
Sbjct: 410 DDGMELLHEMPRR--GLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCN 467

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNL---------MPNLIMYNAVIGLLCNNDDVDN 344
             LD L        A++++  M     +L          P+++ YN +I  L N      
Sbjct: 468 TLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLE 527

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
               +++M   G  PD++TY+ + + L K  R+ E  + F  M    + P  +   T I 
Sbjct: 528 AEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLIN 587

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 464
               A   +  +E++  +   GI+        L+ G R +G ++      +EM++  +  
Sbjct: 588 GYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYP 647

Query: 465 YEVTMHKLKKAFYNESRSMRDI 486
             +T+  +   F+++    R +
Sbjct: 648 DTITIRNMLTGFWSKEELERAV 669



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 118/302 (39%), Gaps = 46/302 (15%)

Query: 182 VVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFG 241
           V+  N L+ A+ R E        +    +K +  D  SF IL++ +     +  A  TFG
Sbjct: 81  VIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFG 140

Query: 242 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
           ++  +   +P+ V+ + T L  L    +V EAL        + C P +  F+  ++ L +
Sbjct: 141 KLT-KLGLHPD-VVTFTTLLHGLCLDHRVSEALDLFH----QICRPDVLTFTTLMNGLCR 194

Query: 302 LNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM--VFHGAFP 359
                 AV L D MV  G  L P+ I Y   +  +C   D  +      +M  + H   P
Sbjct: 195 EGRVVEAVALLDRMVENG--LQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISH-IKP 251

Query: 360 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 419
           + + Y+ I + L K+ R  +    F EM                                
Sbjct: 252 NVVIYSAIIDGLCKDGRHSDSHNLFIEM-------------------------------- 279

Query: 420 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 479
               + GI P   + N ++ G    GR S  +R  +EML R+I    VT + L  AF  E
Sbjct: 280 ---QDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKE 336

Query: 480 SR 481
            +
Sbjct: 337 GK 338


>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Vitis vinifera]
          Length = 665

 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 78/356 (21%), Positives = 145/356 (40%), Gaps = 8/356 (2%)

Query: 109 QRLSPYAWNLMVDVLGKNGRFEQ-MWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAV 167
            + +P  + +++    + G  E+ +W      K D + ++     + D     G++D   
Sbjct: 122 SKFTPNVFGVLIIAFSEMGLVEEALW---VYYKMDVLPAMQACNMVLDGLVKKGRFDTMW 178

Query: 168 MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW 227
             +  M   G   +VV   +L+   CRQ +       F   ++K + P    + IL+ G 
Sbjct: 179 KVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGL 238

Query: 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
             E  + EA   F  M  R      ++  Y T +    +   V +AL+  + M G+   P
Sbjct: 239 CGESRISEAESMFRTM--RNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLP 296

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFR 347
            +  F   +D L K ++   A +    M    F ++PN+ +YN +I   C   ++     
Sbjct: 297 NVVTFGILIDGLCKTDEMVSARKFLIDMAS--FGVVPNIFVYNCLIDGYCKAGNLSEALS 354

Query: 348 FFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 407
              ++  H   PD  TY+++ + L    R+ E +    EM K  + P  +   T I    
Sbjct: 355 LHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYC 414

Query: 408 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
                E AIE+ + + E GI P   + + L+ G    G++        EM+ + +L
Sbjct: 415 KEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLL 470



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/344 (21%), Positives = 152/344 (44%), Gaps = 5/344 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           A N+++D L K GRF+ MW     M   G   ++ T+ ++ D  C  G + +A   FD M
Sbjct: 160 ACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEM 219

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
               +   VV    L+  +C +   +     F       + P+  ++  +++G+ K  +V
Sbjct: 220 IEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHV 279

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           ++A + + EM+   +    +V+ +   +  L +  ++  A KFL  M      P +  ++
Sbjct: 280 KKALELYQEMLG--DGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYN 337

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +D   K  + + A+ L   +      ++P++  Y+ +I  LC  D ++       +M 
Sbjct: 338 CLIDGYCKAGNLSEALSLHSEIEK--HEILPDVFTYSILIKGLCGVDRMEEADGLLQEMK 395

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G  P+++TYN + +   K   + +  +   +M +   +P  +  +T I     A + E
Sbjct: 396 KKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKME 455

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
            A+ ++  ++  G+LP   +   L+ G    G   +  R  +EM
Sbjct: 456 AAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEM 499



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 75/345 (21%), Positives = 141/345 (40%), Gaps = 62/345 (17%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +++++  L    R E+    ++ MK+ G L +  T+ ++ D YC  G  ++A+     
Sbjct: 369 FTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQ 428

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M+  G+E +++  ++L+   C+     +    +   V K + PD  ++  L++G  K+GN
Sbjct: 429 MTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGN 488

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
            +EA +   EM E    +P +V      +  L +  ++ +A+K      G +   T    
Sbjct: 489 TKEAFRLHKEMQEA-GLHP-NVFTLSCLIDGLCKDGRISDAIKLFLAKTGTD---TTGSK 543

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +N LD  +                       PN +MY A+I  LC +  +    +FF  M
Sbjct: 544 TNELDRSL---------------------CSPNHVMYTALIQGLCTDGRIFKASKFFSDM 582

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
              G  PD      +F C++              +I+  ++   L       M+L AD  
Sbjct: 583 RCSGLRPD------VFTCIV--------------IIQGHFRAMHLR----DVMMLQAD-- 616

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
                    IL+ GI+P  +    L  G    G L    R +E++
Sbjct: 617 ---------ILKMGIIPNSSVYRVLAKGYEESGYLKSALRCSEDL 652



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/297 (20%), Positives = 122/297 (41%), Gaps = 39/297 (13%)

Query: 184 AVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
           A N +L  + ++    +    + + V +   P+  ++  L++G  ++G+  +A + F EM
Sbjct: 160 ACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEM 219

Query: 244 VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303
           +E+ +  P  V+ Y   +  L    ++ EA    R M+     P L  ++  +D   K+ 
Sbjct: 220 IEK-KIFPT-VVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIA 277

Query: 304 DSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLT 363
               A++L+  M+G G  L+PN++ +  +I  LC  D++ +  +F   M   G  P+   
Sbjct: 278 HVKKALELYQEMLGDG--LLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFV 335

Query: 364 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 423
           YN + +   K   + E      E+ K+E  P                      +++ Y +
Sbjct: 336 YNCLIDGYCKAGNLSEALSLHSEIEKHEILP----------------------DVFTYSI 373

Query: 424 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 480
                        L+ GL  + R+ +     +EM  +  L   VT + L   +  E 
Sbjct: 374 -------------LIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEG 417



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 74/181 (40%), Gaps = 5/181 (2%)

Query: 290 KFFSNALDILVKLNDSTHAVQ--LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFR 347
           KF  N   +L+        V+  LW   V    +++P +   N V+  L      D +++
Sbjct: 123 KFTPNVFGVLIIAFSEMGLVEEALW---VYYKMDVLPAMQACNMVLDGLVKKGRFDTMWK 179

Query: 348 FFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 407
            +  MV  GA P+ +TY  + +   +     +  + F EMI+ +  PT +     I  L 
Sbjct: 180 VYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLC 239

Query: 408 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEV 467
                  A  ++  +  +G+LP   + N ++ G   +  +       +EML   +L   V
Sbjct: 240 GESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVV 299

Query: 468 T 468
           T
Sbjct: 300 T 300


>gi|255660942|gb|ACU25640.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 484

 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 101/399 (25%), Positives = 177/399 (44%), Gaps = 25/399 (6%)

Query: 77  IIPTPD--LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLM--VDVLGKNGRFEQM 132
           ++P+ D  LV+ VL  + +S   A+ FFRW  R           +  +++LG+  +    
Sbjct: 6   LVPSIDHELVYNVLHSAKNS-EHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +  M + G+      +  + DSY  AG   E+V  F  M   GVE+ + + ++L   
Sbjct: 65  RCILLDMPKKGLEWDEDLWVLMIDSYGKAGIVQESVKMFQKMEELGVERTIKSYDALFKV 124

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           I R+         F   + + ++P   +F +++ G+   G VE AN+ F +M  R E  P
Sbjct: 125 ILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMMWGFFLSGKVETANRFFEDMKSR-EIMP 183

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           + V+ Y T +    R K+++EA K+   MKG N  PT+  ++  +   V ++    A++L
Sbjct: 184 D-VVTYNTMVNGYCRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDALRL 242

Query: 312 WDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECL 371
            + M   GF + PN I Y+ ++  LCN + +        +MV     P   T N IF  L
Sbjct: 243 VEEMK--GFGMKPNAITYSTLLPGLCNAEKMSEARSILKEMVEKYIAP---TDNSIFMRL 297

Query: 372 I----KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 427
           I    K   +         MI+        +    I     A E + AI++ + ++E  I
Sbjct: 298 ISGQCKAGDLDAAANVLKAMIRLSVPTEAGHYGVLIENYCKAGEYDKAIKLLDKVIEKDI 357

Query: 428 -------LPLEASA-NELLVGLRNLGRLSDVRRFAEEML 458
                  L +E+SA N L+  L N G+ +       +++
Sbjct: 358 ILRPQSTLHMESSAYNPLIEYLCNNGQTAKAEALVRQLM 396



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 110/262 (41%), Gaps = 47/262 (17%)

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM----VERFEWNPEHVLAYETF 260
            L+  KK ++ D D + ++++ + K G V+E+ K F +M    VER       + +Y+  
Sbjct: 68  LLDMPKKGLEWDEDLWVLMIDSYGKAGIVQESVKMFQKMEELGVER------TIKSYDAL 121

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF 320
              ++R  +   A ++   M  E   PT   F+               V +W      GF
Sbjct: 122 FKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFN---------------VMMW------GF 160

Query: 321 NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEV 380
            L                +  V+   RFF+ M      PD +TYN +     + K++ E 
Sbjct: 161 FL----------------SGKVETANRFFEDMKSREIMPDVVTYNTMVNGYCRVKKMEEA 204

Query: 381 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 440
           EK+F EM     +PT +   T I   +  D  + A+ +   +   G+ P   + + LL G
Sbjct: 205 EKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDALRLVEEMKGFGMKPNAITYSTLLPG 264

Query: 441 LRNLGRLSDVRRFAEEMLNRRI 462
           L N  ++S+ R   +EM+ + I
Sbjct: 265 LCNAEKMSEARSILKEMVEKYI 286



 Score = 45.1 bits (105), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 84/181 (46%), Gaps = 23/181 (12%)

Query: 135 AVRVMKEDGVLSLPT----FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV------- 183
           A  V+K    LS+PT    +  + ++YC AG+YD+A+   D +    +E+D++       
Sbjct: 310 AANVLKAMIRLSVPTEAGHYGVLIENYCKAGEYDKAIKLLDKV----IEKDIILRPQSTL 365

Query: 184 -----AVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANK 238
                A N L+  +C    QT++A   + ++ K+   D  +   L+ G  +EG+ + A +
Sbjct: 366 HMESSAYNPLIEYLC-NNGQTAKAEALVRQLMKLGVQDPTALNTLIRGHSQEGSPDSAFE 424

Query: 239 TFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDI 298
               M+ R + + E   +Y++ + + ++  +  +A   L  M      P    F + ++ 
Sbjct: 425 LLKIMLRR-KVDSEQS-SYDSLVQSYLKKNEPADAKAALDSMIENGHLPDSSLFRSVMES 482

Query: 299 L 299
           L
Sbjct: 483 L 483


>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
          Length = 683

 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 151/359 (42%), Gaps = 22/359 (6%)

Query: 132 MWNAVRVMKEDGVLSLP-------------TFASIFDSYCGAGKYDEAVMSFDVMSMHGV 178
           M   VR+ + D V+SL              +F  +   +C   K   A+ +F  ++  G+
Sbjct: 88  MGAVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGL 147

Query: 179 EQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANK 238
             DVV   +LL  +C  +++ S AL+  +++ +   PD  +F  L+ G  +EG V EA  
Sbjct: 148 HPDVVTFTTLLHGLC-LDHRVSEALDLFHQICR---PDVLTFTTLMNGLCREGRVVEAVA 203

Query: 239 TFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG-ENCFPTLKFFSNALD 297
               MVE     P+ +  Y TF+  + +      AL  LR M+   +  P +  +S  +D
Sbjct: 204 LLDRMVEN-GLQPDQI-TYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIID 261

Query: 298 ILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGA 357
            L K    + +  L+  M   G  + PN++ YN +IG  C +       R   +M+    
Sbjct: 262 GLCKDGRHSDSHNLFIEMQDKG--IFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKI 319

Query: 358 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 417
            P+ +TYN +    +K  +  E  + + EM+     P  +   + I      D  + A +
Sbjct: 320 SPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAED 379

Query: 418 IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
           ++  +   G  P   +   L+ G     R+ D      EM  R ++   VT + L   F
Sbjct: 380 MFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGF 438



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 76/390 (19%), Positives = 161/390 (41%), Gaps = 14/390 (3%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N M+     +GR+      ++ M E  +  ++ T+ ++ +++   GK+ EA   +D M
Sbjct: 290 TYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEM 349

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G+  + +  NS++   C+Q+   +    F     K   PD  +F  L++G+     +
Sbjct: 350 LPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRI 409

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           ++  +   EM  R      + + Y T +        ++ AL   + M      P +   +
Sbjct: 410 DDGMELLHEMPRR--GLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCN 467

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNL---------MPNLIMYNAVIGLLCNNDDVDN 344
             LD L        A++++  M     +L          P+++ YN +I  L N      
Sbjct: 468 TLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLE 527

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
               +++M   G  PD++TY+ + + L K  R+ E  + F  M    + P  +   T I 
Sbjct: 528 AEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLIN 587

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 464
               A   +  +E++  +   GI+        L+ G R +G ++      +EM++  +  
Sbjct: 588 GYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYP 647

Query: 465 YEVTMHKLKKAFYNESRSMRDI--FDSLER 492
             +T+  +   F+++    R +   + L+R
Sbjct: 648 DTITIRNMLTGFWSKEELERAVAMLEDLQR 677



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 118/302 (39%), Gaps = 46/302 (15%)

Query: 182 VVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFG 241
           V+  N L+ A+ R E        +    +K +  D  SF IL++ +     +  A  TFG
Sbjct: 81  VIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFG 140

Query: 242 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
           ++  +   +P+ V+ + T L  L    +V EAL        + C P +  F+  ++ L +
Sbjct: 141 KLT-KLGLHPD-VVTFTTLLHGLCLDHRVSEALDLFH----QICRPDVLTFTTLMNGLCR 194

Query: 302 LNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM--VFHGAFP 359
                 AV L D MV  G  L P+ I Y   +  +C   D  +      +M  + H   P
Sbjct: 195 EGRVVEAVALLDRMVENG--LQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISH-IKP 251

Query: 360 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 419
           + + Y+ I + L K+ R  +    F EM                                
Sbjct: 252 NVVIYSAIIDGLCKDGRHSDSHNLFIEM-------------------------------- 279

Query: 420 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 479
               + GI P   + N ++ G    GR S  +R  +EML R+I    VT + L  AF  E
Sbjct: 280 ---QDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKE 336

Query: 480 SR 481
            +
Sbjct: 337 GK 338


>gi|224068454|ref|XP_002326124.1| predicted protein [Populus trichocarpa]
 gi|222833317|gb|EEE71794.1| predicted protein [Populus trichocarpa]
          Length = 512

 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 98/426 (23%), Positives = 172/426 (40%), Gaps = 58/426 (13%)

Query: 54  RIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFR-----WAGRG 108
           R +C++  H   + +   +   G +P   L+     +++ + +S  D  +       G+ 
Sbjct: 81  RSLCQMGHHDLVNIVFDYMGSDGHLPDSKLLG--FLVTWMAQASDFDMVKKLLAEVQGKE 138

Query: 109 QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP----TFASIFDSYCGAGKYD 164
            R++ + +N ++ VL K     Q+  A+ + KE  V+  P    TF  +    C  G  D
Sbjct: 139 VRINSFVYNNLLSVLVKQ---NQVHEAIYLFKEYLVMQSPPDTWTFNILIRGLCRVGGVD 195

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD---------- 214
            A   F  M   G   DVV  N+L++ +C+  N+  R  E    ++   D          
Sbjct: 196 RAFEVFKDMESFGCLPDVVTYNTLINGLCKA-NEVQRGCELFKEIQSRSDCSPDIVTYTS 254

Query: 215 ---------------------------PDGDSFAILLEGWEKEGNVEEANKTFGEMVERF 247
                                      P+  +F +L++G+ K GN+ EA   + +M   F
Sbjct: 255 IISGFCKSGKMKEASNLFEEMMRSGIQPNVITFNVLIDGFGKIGNIAEAEAMYRKMA-YF 313

Query: 248 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 307
           + + + V+ + + +    R  QV+  LKF  VMK  N  PT+  ++  ++ L K N    
Sbjct: 314 DCSAD-VVTFTSLIDGYCRAGQVNHGLKFWNVMKTRNVSPTVYTYAVLINALCKENRLNE 372

Query: 308 AVQLWDIMVGI-GFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM 366
           A    D +  I   +++P   MYN VI   C   +VD       +M      PD +T+ +
Sbjct: 373 A---RDFLGQIKNSSIIPKPFMYNPVIDGFCKAGNVDEGNVILKEMEEKRCDPDKVTFTI 429

Query: 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 426
           +        R+ E    F+ M+     P  +   + I+ LL A  P  A  I    LE+ 
Sbjct: 430 LIIGHCVKGRMFEAINIFNRMLATRCAPDNITVNSLISCLLKAGMPNEAYRIRKMALEDR 489

Query: 427 ILPLEA 432
            L L +
Sbjct: 490 NLGLSS 495



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 82/390 (21%), Positives = 160/390 (41%), Gaps = 17/390 (4%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPY--AWNLMVDVLGKNGRFEQMWNAVR 137
           TP +  EV++  +++P     F  ++     ++     +NL++  L + G  + +     
Sbjct: 39  TPLIAFEVIK-RFNNPKVGFKFLEFSRLNLNVNHCYSTYNLLMRSLCQMGHHDLVNIVFD 97

Query: 138 VMKEDGVLSLPTFASIFDSYCG-AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
            M  DG L          ++   A  +D        +    V  +    N+LLS + +Q 
Sbjct: 98  YMGSDGHLPDSKLLGFLVTWMAQASDFDMVKKLLAEVQGKEVRINSFVYNNLLSVLVKQ- 156

Query: 197 NQTSRALEFLNRVKKIVDP-DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
           NQ   A+        +  P D  +F IL+ G  + G V+ A + F +M E F   P+ V+
Sbjct: 157 NQVHEAIYLFKEYLVMQSPPDTWTFNILIRGLCRVGGVDRAFEVFKDM-ESFGCLPD-VV 214

Query: 256 AYETFLITLIRGKQVDEALK-FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314
            Y T +  L +  +V    + F  +    +C P +  +++ +    K      A  L++ 
Sbjct: 215 TYNTLINGLCKANEVQRGCELFKEIQSRSDCSPDIVTYTSIISGFCKSGKMKEASNLFEE 274

Query: 315 MVGIGFNLMPNLIMYNAVI---GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECL 371
           M+  G  + PN+I +N +I   G + N  + + ++R   +M +     D +T+  + +  
Sbjct: 275 MMRSG--IQPNVITFNVLIDGFGKIGNIAEAEAMYR---KMAYFDCSADVVTFTSLIDGY 329

Query: 372 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 431
            +  +V+   KF++ M      PT    A  I  L   +    A +    I  + I+P  
Sbjct: 330 CRAGQVNHGLKFWNVMKTRNVSPTVYTYAVLINALCKENRLNEARDFLGQIKNSSIIPKP 389

Query: 432 ASANELLVGLRNLGRLSDVRRFAEEMLNRR 461
              N ++ G    G + +     +EM  +R
Sbjct: 390 FMYNPVIDGFCKAGNVDEGNVILKEMEEKR 419


>gi|357499981|ref|XP_003620279.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495294|gb|AES76497.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 585

 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 128/277 (46%), Gaps = 22/277 (7%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N++VD   K+ + ++      +M + G++  + T+ S+ D YC   + + A   F+ 
Sbjct: 266 YTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNT 325

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEG 231
           M+  GV  D+ + N L++  C+ + +  +A+   N +  K + P+  ++  L++G  K G
Sbjct: 326 MAQGGVNPDIRSYNILINGFCKIK-KVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSG 384

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            +  A +   +M +R    P ++L Y + +  L +  QVD+A+  +   K +   P++  
Sbjct: 385 RISYALQLVDQMHDR--GVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYT 442

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           ++  +D L K       V+ +DI V            YN +I   C     D       +
Sbjct: 443 YTILIDGLCK-------VEGYDITVN----------TYNVMIHGFCKKGLFDEALSLLSK 485

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           M      P+++TY +    L+ N    + EK F EMI
Sbjct: 486 MKDSSCIPNAVTYEITIRSLLDNNENDKAEKLFREMI 522



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 80/373 (21%), Positives = 160/373 (42%), Gaps = 28/373 (7%)

Query: 83  LVHEVLQLSYDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE 141
           L+H + ++      +A+D   R  G+  +L+   +N ++  + K+      ++    M  
Sbjct: 166 LIHGLCKVG--ETRAALDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVS 223

Query: 142 DGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS 200
            G+  ++ T++++   +   GK  +A+  F+ + +  ++ D    N L+   C+      
Sbjct: 224 KGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKE 283

Query: 201 RALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF 260
               F   +K+ + PD  ++  L++G+     V  A   F  M +    NP+ + +Y   
Sbjct: 284 GKTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNTMAQG-GVNPD-IRSYNIL 341

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF 320
           +    + K+VD+A+     M  +N  P +  +++ +D L K    ++A+QL D M   G 
Sbjct: 342 INGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRG- 400

Query: 321 NLMPNLIMYNAVIGLLCNNDDVDN----VFRFFDQ-----MVFHGAFPDSL--------- 362
            + PN++ YN++I  L     VD     + +F DQ     M  +    D L         
Sbjct: 401 -VPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGLCKVEGYDIT 459

Query: 363 --TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 420
             TYN++     K     E      +M  +   P  +     I  LLD +E + A +++ 
Sbjct: 460 VNTYNVMIHGFCKKGLFDEALSLLSKMKDSSCIPNAVTYEITIRSLLDNNENDKAEKLFR 519

Query: 421 YILENGILPLEAS 433
            ++  G+L   AS
Sbjct: 520 EMITRGLLNRSAS 532



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 81/407 (19%), Positives = 173/407 (42%), Gaps = 26/407 (6%)

Query: 90  LSYDSPSS----------AVDFFRWAGRGQRLSP-YAWNLMVDVLGKNGRFEQMWNAVRV 138
           +SY S S+          AV  F    R     P + +N ++  L K+  +  + +  + 
Sbjct: 52  ISYSSTSTTFHSNNDVDDAVSLFNRLLRQNPTPPAFEFNKILGSLVKSKHYHTVLSLSQK 111

Query: 139 MKEDGVL-SLPTFASIFDSYCGAG----KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC 193
           M+  G+  +L     +   +C  G    +  +A +  D +   G   D V+  +L+  +C
Sbjct: 112 MEFRGIKPNLFNCNILIYCFCQLGLIPCQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLC 171

Query: 194 RQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
           +   +T  AL+ L RV  K+V  +   +  ++ G  K+ +V +A   + EMV +   +P 
Sbjct: 172 K-VGETRAALDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSK-GISP- 228

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
           +V+ Y   +       ++ +A+     +  EN  P    F+  +D   K         ++
Sbjct: 229 NVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVF 288

Query: 313 DIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 372
            +M+  G  ++P+++ YN+++   C   +V+     F+ M   G  PD  +YN++     
Sbjct: 289 AMMMKQG--IIPDVVTYNSLMDGYCLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFC 346

Query: 373 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 432
           K K+V +    F+EM      P  +   + I  L  +     A+++ + + + G+ P   
Sbjct: 347 KIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNIL 406

Query: 433 SANELLVGLRNLGRLSD----VRRFAEEMLNRRILIYEVTMHKLKKA 475
           + N ++  L    ++      + +F ++ +   +  Y + +  L K 
Sbjct: 407 TYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGLCKV 453



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/336 (18%), Positives = 137/336 (40%), Gaps = 16/336 (4%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           ++ ++    C  G+   A+     +    V+ + V  N+++  +C+ ++       +   
Sbjct: 162 SYGTLIHGLCKVGETRAALDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEM 221

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           V K + P+  +++ L+ G+   G +++A   F +++   E        +   +    + +
Sbjct: 222 VSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKII--LENIKPDGYTFNILVDGFCKDR 279

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           ++ E      +M  +   P +  +++ +D    + +   A  +++ M   G N  P++  
Sbjct: 280 KMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNTMAQGGVN--PDIRS 337

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           YN +I   C    VD     F++M      P+ +TYN + + L K+ R+    +   +M 
Sbjct: 338 YNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMH 397

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
                P  L   + I  L    + + AI +     + GI P   +   L+ GL  +    
Sbjct: 398 DRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGLCKV---- 453

Query: 449 DVRRFAEEMLNRRILIYEVTMHKL-KKAFYNESRSM 483
                  E  +  +  Y V +H   KK  ++E+ S+
Sbjct: 454 -------EGYDITVNTYNVMIHGFCKKGLFDEALSL 482



 Score = 38.5 bits (88), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 36/79 (45%)

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           N I Y++      +N+DVD+    F++++     P +  +N I   L+K+K  H V    
Sbjct: 50  NFISYSSTSTTFHSNNDVDDAVSLFNRLLRQNPTPPAFEFNKILGSLVKSKHYHTVLSLS 109

Query: 385 HEMIKNEWQPTPLNCATAI 403
            +M     +P   NC   I
Sbjct: 110 QKMEFRGIKPNLFNCNILI 128


>gi|357115764|ref|XP_003559656.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 867

 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 75/335 (22%), Positives = 141/335 (42%), Gaps = 5/335 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ ++   Y   G++ EA   F  M+  G+  D+V  NSL+ ++C+ +     A  F + 
Sbjct: 344 TYTAMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSI 403

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
             K   PD  S++ILL G+  EG   + N  F  M +       H   +   +    +  
Sbjct: 404 ATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSH--CFNILINAHAKRG 461

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
            +DEAL     M+G+   P +  ++  +  L ++     A++    M+ IG  L PN ++
Sbjct: 462 MMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMISIG--LKPNTVV 519

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHG-AFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
           Y+++I   C + D+        +M+  G   P+   ++ I   L    RV   +  F+ +
Sbjct: 520 YHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPNITFFSSIIHSLCNEGRVMNAQDVFNLV 579

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
           I    +P      + I       + + A  + + ++  G  P   + + L+ G    GR+
Sbjct: 580 IHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTEPDVVTYSTLINGYFKSGRI 639

Query: 448 SDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 482
            D      EML +R+    VT   +    +   R+
Sbjct: 640 DDGLILFREMLCKRVKPTTVTYSLVLDGLFRAGRT 674



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/350 (21%), Positives = 157/350 (44%), Gaps = 41/350 (11%)

Query: 94  SPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFAS 152
           S  +A  F   A +G +    ++++++      GRF  M N    M ++G+++    F  
Sbjct: 393 SKEAAEIFHSIATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNI 452

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI 212
           + +++   G  DEA++ F  M   GV  +VV   ++++A+CR   + + A+E L+++  I
Sbjct: 453 LINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRM-GRLADAMEKLSQMISI 511

Query: 213 -VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD 271
            + P+   +  L++G+   G++ +A +   EM++  +  P                    
Sbjct: 512 GLKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMD--QGIPR------------------- 550

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA 331
                          P + FFS+ +  L       +A  ++++++ IG    P++  +N+
Sbjct: 551 ---------------PNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDR--PDIFTFNS 593

Query: 332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
           +I   C    +D  F   D MV  G  PD +TY+ +     K+ R+ +    F EM+   
Sbjct: 594 LIDGYCLVGKMDKAFGVLDAMVSAGTEPDVVTYSTLINGYFKSGRIDDGLILFREMLCKR 653

Query: 392 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 441
            +PT +  +  +  L  A     A ++++ ++E+G     ++   +L GL
Sbjct: 654 VKPTTVTYSLVLDGLFRAGRTSAAKKMFHEMIESGTAMSISTYTIILQGL 703



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 117/322 (36%), Gaps = 50/322 (15%)

Query: 130 EQMWNAVRVMKEDGVLSLP----------TFASIFDSYCGAGKYDEAVMSFDVMSMHGVE 179
             + N  RVM    V +L           TF S+ D YC  GK D+A    D M   G E
Sbjct: 561 HSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTE 620

Query: 180 QDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKT 239
            DVV  ++L++   +        + F   + K V P   +++++L+G  + G    A K 
Sbjct: 621 PDVVTYSTLINGYFKSGRIDDGLILFREMLCKRVKPTTVTYSLVLDGLFRAGRTSAAKKM 680

Query: 240 FGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299
           F EM+E        +  Y   L  L R    DEA+     +   N    LKF        
Sbjct: 681 FHEMIE--SGTAMSISTYTIILQGLCRNNCTDEAITLFHKLGAMN----LKF-------- 726

Query: 300 VKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFP 359
                                     + + N +I  L      +     F  +   G  P
Sbjct: 727 -------------------------EIAILNTMIHALYKVKRREEAHDLFASVSASGLVP 761

Query: 360 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 419
           ++ TY ++   L+K   V E +  F  M K    P+       I MLL   E  +    +
Sbjct: 762 NASTYGVMIINLLKEGSVEEADIMFSSMEKTGCAPSSRLLNDIIRMLLQKGEI-VKAGYY 820

Query: 420 NYILENGILPLEASANELLVGL 441
              ++  I+ LEAS   LL+ L
Sbjct: 821 MSKVDGTIISLEASTTSLLISL 842



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 130/323 (40%), Gaps = 45/323 (13%)

Query: 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204
           L++ T+  + D  C A + D     F  +   G+  D +  N+ L  +C  + +T  AL 
Sbjct: 163 LTVHTYGILMDCCCRARRPDLGPAFFARLLRAGLRTDGIVTNTFLKCLCYAK-RTDEAL- 220

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
                           ++LL    + G V +A                   +Y T + +L
Sbjct: 221 ----------------SMLLHRMSELGCVPDA------------------FSYNTVIKSL 246

Query: 265 IRGKQVDEALK-FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLM 323
             G +  EAL   LR+ KG+ C P +  ++  +  L    + + A  L++ MV  G  ++
Sbjct: 247 CGGSRSQEALDMLLRMTKGDGCSPDVVSYTMVIHGLFMEGEISKACNLFNEMVQKG--VV 304

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMI---FECLIKNKRVHEV 380
           PN++ YN+++  LC    +D       QM  +   PD +TY  +   + CL    R  E 
Sbjct: 305 PNVVTYNSIVHALCKARAMDKAELVLRQMFDNSIQPDEVTYTAMIHGYSCL---GRWKEA 361

Query: 381 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 440
            K F EM +    P  +   + +  L      + A EI++ I   G  P   S + LL G
Sbjct: 362 AKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDIISYSILLHG 421

Query: 441 LRNLGRLSDVRRFAEEMLNRRIL 463
               GR  D+      M +  I+
Sbjct: 422 YATEGRFVDMNNLFHSMTDNGIV 444



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 76/380 (20%), Positives = 143/380 (37%), Gaps = 44/380 (11%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFD 171
           +++N ++  L    R ++  + + R+ K DG    + ++  +       G+  +A   F+
Sbjct: 237 FSYNTVIKSLCGGSRSQEALDMLLRMTKGDGCSPDVVSYTMVIHGLFMEGEISKACNLFN 296

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
            M   GV  +VV  NS++ A+C+        L         + PD  ++  ++ G+   G
Sbjct: 297 EMVQKGVVPNVVTYNSIVHALCKARAMDKAELVLRQMFDNSIQPDEVTYTAMIHGYSCLG 356

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
             +EA K F EM                                       E   P +  
Sbjct: 357 RWKEAAKMFKEMTR-------------------------------------EGLIPDIVT 379

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           F++ +D L K   S  A +++  +   G    P++I Y+ ++          ++   F  
Sbjct: 380 FNSLMDSLCKHKRSKEAAEIFHSIATKGHK--PDIISYSILLHGYATEGRFVDMNNLFHS 437

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M  +G   DS  +N++     K   + E    F EM      P  +  AT I  L     
Sbjct: 438 MTDNGIVADSHCFNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGR 497

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT-MH 470
              A+E  + ++  G+ P     + L+ G    G L   +    EM+++ I    +T   
Sbjct: 498 LADAMEKLSQMISIGLKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPNITFFS 557

Query: 471 KLKKAFYNESRSM--RDIFD 488
            +  +  NE R M  +D+F+
Sbjct: 558 SIIHSLCNEGRVMNAQDVFN 577



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/177 (22%), Positives = 70/177 (39%), Gaps = 3/177 (1%)

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV-FHGAFPDSLTYNMIFECLIKNKRVH 378
              +P+   YN VI  LC             +M    G  PD ++Y M+   L     + 
Sbjct: 230 LGCVPDAFSYNTVIKSLCGGSRSQEALDMLLRMTKGDGCSPDVVSYTMVIHGLFMEGEIS 289

Query: 379 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 438
           +    F+EM++    P  +   + +  L  A   + A  +   + +N I P E +   ++
Sbjct: 290 KACNLFNEMVQKGVVPNVVTYNSIVHALCKARAMDKAELVLRQMFDNSIQPDEVTYTAMI 349

Query: 439 VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMR--DIFDSLERR 493
            G   LGR  +  +  +EM    ++   VT + L  +     RS    +IF S+  +
Sbjct: 350 HGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIATK 406


>gi|357455845|ref|XP_003598203.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355487251|gb|AES68454.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 503

 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 94/380 (24%), Positives = 160/380 (42%), Gaps = 20/380 (5%)

Query: 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT-FASIFDSYCGAGKYDEAVMS 169
           LS  ++NL++D++ K  +F+     +  M +  +   PT F  +      A    +AV +
Sbjct: 93  LSLQSYNLLIDIVSKVHQFDLASQLIVEMDQINLPPTPTTFFILIKRLISANLTRQAVRA 152

Query: 170 F-DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
           F ++ S    +        LL  +C+       A E  NR       D   + +L+ GW 
Sbjct: 153 FNEIESYTDTKLTSDHFTYLLDTLCKY-GYVKHACELFNRNSNRFVADVKMYTVLIYGWC 211

Query: 229 KEGNVEEANKTFGEM-VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK-GENCF 286
           K G  + A     EM V+  E N   V+ Y   L  + R   +    +F R ++  E  F
Sbjct: 212 KIGRFKTALSFLNEMKVKGVEPN---VVTYNVILNGICRKASLHPEERFERTIRDAEKVF 268

Query: 287 ---------PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337
                    P +  FS  L +  + +     +    +M   G  + PN++ Y +VI  LC
Sbjct: 269 DEMRESGIEPDVTSFSIVLHVYSRAHKPQLVLDKLGLMKEKG--ICPNVVTYTSVIKCLC 326

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW-QPTP 396
           +   ++      D+MV +G  P + TYN  F+     K   +  KFF +M ++   +PT 
Sbjct: 327 SCGRIEEAEDLIDEMVRNGVSPCAATYNCFFKEYRGRKDADKALKFFKKMKEDGLCEPTT 386

Query: 397 LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 456
                 I M L AD   +  EIWN ++E+G+ P   S   L+ GL    +  +  ++  E
Sbjct: 387 HTYGVLIAMFLKADMIGVVKEIWNDMMESGVGPDLDSYTVLIHGLCESKKWREACQYFVE 446

Query: 457 MLNRRILIYEVTMHKLKKAF 476
           M+ +  L  +VT   L +  
Sbjct: 447 MIEKGFLPQKVTFETLYRGL 466



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 64/311 (20%), Positives = 128/311 (41%), Gaps = 13/311 (4%)

Query: 110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS 169
           +L+   +  ++D L K G  +             V  +  +  +   +C  G++  A+  
Sbjct: 163 KLTSDHFTYLLDTLCKYGYVKHACELFNRNSNRFVADVKMYTVLIYGWCKIGRFKTALSF 222

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQ-----ENQTSRALEFLNRV-----KKIVDPDGDS 219
            + M + GVE +VV  N +L+ ICR+     E +  R +    +V     +  ++PD  S
Sbjct: 223 LNEMKVKGVEPNVVTYNVILNGICRKASLHPEERFERTIRDAEKVFDEMRESGIEPDVTS 282

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           F+I+L  + +    +      G M E+      +V+ Y + +  L    +++EA   +  
Sbjct: 283 FSIVLHVYSRAHKPQLVLDKLGLMKEK--GICPNVVTYTSVIKCLCSCGRIEEAEDLIDE 340

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
           M      P    ++          D+  A++ +  M   G    P    Y  +I +    
Sbjct: 341 MVRNGVSPCAATYNCFFKEYRGRKDADKALKFFKKMKEDGL-CEPTTHTYGVLIAMFLKA 399

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
           D +  V   ++ M+  G  PD  +Y ++   L ++K+  E  ++F EMI+  + P  +  
Sbjct: 400 DMIGVVKEIWNDMMESGVGPDLDSYTVLIHGLCESKKWREACQYFVEMIEKGFLPQKVTF 459

Query: 400 ATAITMLLDAD 410
            T    L+ +D
Sbjct: 460 ETLYRGLIQSD 470


>gi|224053663|ref|XP_002297917.1| predicted protein [Populus trichocarpa]
 gi|222845175|gb|EEE82722.1| predicted protein [Populus trichocarpa]
          Length = 670

 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 105/466 (22%), Positives = 198/466 (42%), Gaps = 34/466 (7%)

Query: 42  THLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDF 101
            HL    +    R+ CE     +     S L    +I    L H  L+  Y+    A   
Sbjct: 138 AHLPEKAVDLFDRMACEFECKRTGKSFNSVL---NVIIQEGLFHRALEF-YNHVIGA--- 190

Query: 102 FRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP----TFASIFD 155
                +G  +SP    +NL++  + K G  +   +A++V ++  +        T+ ++ D
Sbjct: 191 -----KGVSISPNVLTFNLVIKAMCKVGLVD---DAIQVFRDMTIRKCEPDVYTYCTLMD 242

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDP 215
             C A + DEAV   D M + G     V  N L++ +C++ + +  A    N   K   P
Sbjct: 243 GLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIP 302

Query: 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR-GKQVDEAL 274
           +  ++  L+ G   +G +E+A      MV   +  P +V+ Y T +  L++ G+ +D A 
Sbjct: 303 NEVTYNTLIHGLCLKGKLEKAISLLDRMVSS-KCVP-NVVTYGTIINGLVKQGRALDGAC 360

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
             L +M+          +S  +  L K   S  A+ L+  M   G+ L  N I+Y+AVI 
Sbjct: 361 -VLALMEERGYCVNEYVYSTLISGLFKEGKSQEAMHLFKEMTVKGYEL--NTIVYSAVID 417

Query: 335 LLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
            LC +   D+      +M   G  P++ T + + +   +    H   + + +M K+ +  
Sbjct: 418 GLCRDGKPDDAVEVLSEMTNKGCTPNAYTCSSLMKGFFEAGNSHRAVEVWKDMAKHNFTQ 477

Query: 395 TPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 454
             +  +  I  L    + + A+ +W  +L  G  P   + + ++ GL   G + D  +  
Sbjct: 478 NEVCYSVLIHGLCKDGKVKEAMMVWTQMLGKGCKPDVVAYSSMINGLSIAGLVEDAMQLY 537

Query: 455 EEMLNRR------ILIYEVTMHKLKKAFYNESRSMRDIFDSLERRC 494
            EML +       ++ Y + ++ L K   + SR++  +   L+R C
Sbjct: 538 NEMLCQGPDSQPDVVTYNILLNTLCKQ-SSISRAIDLLNSMLDRGC 582



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/338 (20%), Positives = 137/338 (40%), Gaps = 40/338 (11%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSF 170
           SP  +N++++ L K G   +    V  M   G + +  T+ ++    C  GK ++A+   
Sbjct: 268 SPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYNTLIHGLCLKGKLEKAISLL 327

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
           D M       +VV   ++++ + +Q      A       ++    +   ++ L+ G  KE
Sbjct: 328 DRMVSSKCVPNVVTYGTIINGLVKQGRALDGACVLALMEERGYCVNEYVYSTLISGLFKE 387

Query: 231 GNVEEANKTFGEM-VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
           G  +EA   F EM V+ +E N    + Y   +  L R  + D+A++ L  M  + C P  
Sbjct: 388 GKSQEAMHLFKEMTVKGYELN---TIVYSAVIDGLCRDGKPDDAVEVLSEMTNKGCTPNA 444

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVG-------------------------------- 317
              S+ +    +  +S  AV++W  M                                  
Sbjct: 445 YTCSSLMKGFFEAGNSHRAVEVWKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWTQ 504

Query: 318 -IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG--AFPDSLTYNMIFECLIKN 374
            +G    P+++ Y+++I  L     V++  + +++M+  G  + PD +TYN++   L K 
Sbjct: 505 MLGKGCKPDVVAYSSMINGLSIAGLVEDAMQLYNEMLCQGPDSQPDVVTYNILLNTLCKQ 564

Query: 375 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
             +       + M+     P  + C   + ML +  +P
Sbjct: 565 SSISRAIDLLNSMLDRGCDPDLVTCTIFLRMLREKLDP 602



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/271 (22%), Positives = 118/271 (43%), Gaps = 7/271 (2%)

Query: 217 GDS-FAILLEGWEKEGNVEEANKTFGEMV--ERFEWNPEHVLAYETFLITLIRGKQVDEA 273
           GDS F  L+  +   G+ +   K    M   +R  +    ++ ++ +    +  K VD  
Sbjct: 89  GDSTFYSLINNYANLGDFKSLEKVLDRMKCEKRVIFEKCFIVIFKAYGKAHLPEKAVD-- 146

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI-GFNLMPNLIMYNAV 332
             F R+     C  T K F++ L+++++      A++ ++ ++G  G ++ PN++ +N V
Sbjct: 147 -LFDRMACEFECKRTGKSFNSVLNVIIQEGLFHRALEFYNHVIGAKGVSISPNVLTFNLV 205

Query: 333 IGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 392
           I  +C    VD+  + F  M      PD  TY  + + L K  R+ E      EM  +  
Sbjct: 206 IKAMCKVGLVDDAIQVFRDMTIRKCEPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGC 265

Query: 393 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 452
            P+P+     I  L    +   A ++ + +   G +P E + N L+ GL   G+L     
Sbjct: 266 FPSPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYNTLIHGLCLKGKLEKAIS 325

Query: 453 FAEEMLNRRILIYEVTMHKLKKAFYNESRSM 483
             + M++ + +   VT   +      + R++
Sbjct: 326 LLDRMVSSKCVPNVVTYGTIINGLVKQGRAL 356



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 57/266 (21%), Positives = 103/266 (38%), Gaps = 6/266 (2%)

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           F ++ + + K    E+A   F  M   FE       ++ + L  +I+      AL+F   
Sbjct: 128 FIVIFKAYGKAHLPEKAVDLFDRMACEFECKRTGK-SFNSVLNVIIQEGLFHRALEFYNH 186

Query: 280 M---KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLL 336
           +   KG +  P +  F+  +  + K+     A+Q++  M        P++  Y  ++  L
Sbjct: 187 VIGAKGVSISPNVLTFNLVIKAMCKVGLVDDAIQVFRDMTI--RKCEPDVYTYCTLMDGL 244

Query: 337 CNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 396
           C  D +D      D+M   G FP  +T+N++   L K   +    K    M      P  
Sbjct: 245 CKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNE 304

Query: 397 LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 456
           +   T I  L    + E AI + + ++ +  +P   +   ++ GL   GR  D       
Sbjct: 305 VTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGACVLAL 364

Query: 457 MLNRRILIYEVTMHKLKKAFYNESRS 482
           M  R   + E     L    + E +S
Sbjct: 365 MEERGYCVNEYVYSTLISGLFKEGKS 390



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/184 (21%), Positives = 80/184 (43%), Gaps = 1/184 (0%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G  L+   ++ ++D L ++G+ +     +  M   G   +  T +S+   +  AG    
Sbjct: 403 KGYELNTIVYSAVIDGLCRDGKPDDAVEVLSEMTNKGCTPNAYTCSSLMKGFFEAGNSHR 462

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           AV  +  M+ H   Q+ V  + L+  +C+        + +   + K   PD  +++ ++ 
Sbjct: 463 AVEVWKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWTQMLGKGCKPDVVAYSSMIN 522

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G    G VE+A + + EM+ +   +   V+ Y   L TL +   +  A+  L  M    C
Sbjct: 523 GLSIAGLVEDAMQLYNEMLCQGPDSQPDVVTYNILLNTLCKQSSISRAIDLLNSMLDRGC 582

Query: 286 FPTL 289
            P L
Sbjct: 583 DPDL 586


>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
          Length = 558

 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 89/406 (21%), Positives = 176/406 (43%), Gaps = 46/406 (11%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAV---RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVM 168
           S + +N ++  + K  +F+ + +     ++MK     S+ T +S+ + YC   +  +AV 
Sbjct: 41  SIFEFNKLLSAIAKMKKFDLVISLALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVA 100

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGW 227
             D M   G   D +   +L+  +    N+ S A+  ++R V++   P+  ++ +++ G 
Sbjct: 101 LVDQMVEMGYRPDTITFTTLIHGLFLH-NKASEAVALVDRMVQRGCQPNLVTYGVVVNGL 159

Query: 228 EKEGNVEEANKTFGEM-VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
            K G+++ A     +M   + E +   V+ + T + +L + + VD+AL   + M+ +   
Sbjct: 160 CKRGDIDLAFNLLNKMEAAKIEAD---VVIFNTIIDSLCKYRHVDDALNLFKEMETKGIR 216

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVG-------IGFNLM---------------- 323
           P +  +S+ +  L      + A QL   M+        + FN +                
Sbjct: 217 PNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKL 276

Query: 324 ----------PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 373
                     P++  YN++I   C +D +D   + F+ MV    FPD  TYN + +   K
Sbjct: 277 HDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCK 336

Query: 374 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 433
           +KRV +  + F EM         +   T I  L    + + A +++  ++ +G+ P   +
Sbjct: 337 SKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMT 396

Query: 434 ANELLVGLRNLGRLSDVRRFAEEM----LNRRILIYEVTMHKLKKA 475
            + LL GL N G+L       + M    +   I IY   +  + KA
Sbjct: 397 YSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKA 442



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 73/331 (22%), Positives = 146/331 (44%), Gaps = 39/331 (11%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR----------- 194
           +L T+  + +  C  G  D A    + M    +E DVV  N+++ ++C+           
Sbjct: 148 NLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLF 207

Query: 195 QENQT-----------------------SRALEFL-NRVKKIVDPDGDSFAILLEGWEKE 230
           +E +T                       S A + L + ++K ++P+  +F  L++ + KE
Sbjct: 208 KEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKE 267

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           G   EA K   +M++R   +P+ +  Y + +       ++D+A +    M  ++CFP L 
Sbjct: 268 GKFVEAEKLHDDMIKR-SIDPD-IFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLD 325

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
            ++  +    K        +L+  M   G  L+ + + Y  +I  L ++ D DN  + F 
Sbjct: 326 TYNTLIKGFCKSKRVEDGTELFREMSHRG--LVGDTVTYTTLIQGLFHDGDCDNAQKVFK 383

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
           QMV  G  PD +TY+++ + L  N ++ +  + F  M K+E +       T I  +  A 
Sbjct: 384 QMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAG 443

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGL 441
           + +   +++  +   G+ P   + N ++ GL
Sbjct: 444 KVDDGWDLFCSLSLKGVKPNVVTYNTMISGL 474



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 133/309 (43%), Gaps = 12/309 (3%)

Query: 92  YDSPSSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPT 149
           Y     A++ F+    +G R +   ++ ++  L   GR+      +  M E  +  +L T
Sbjct: 197 YRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVT 256

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE--NQTSRALEFLN 207
           F ++ D++   GK+ EA    D M    ++ D+   NSL++  C  +  ++  +  EF+ 
Sbjct: 257 FNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFM- 315

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            V K   PD D++  L++G+ K   VE+  + F EM  R        + Y T +  L   
Sbjct: 316 -VSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVG--DTVTYTTLIQGLFHD 372

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
              D A K  + M  +   P +  +S  LD L        A++++D M      L  ++ 
Sbjct: 373 GDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKL--DIY 430

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
           +Y  +I  +C    VD+ +  F  +   G  P+ +TYN +   L   + + E      +M
Sbjct: 431 IYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKM 490

Query: 388 IKNEWQPTP 396
              E  P P
Sbjct: 491 --KEDGPLP 497



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/372 (20%), Positives = 154/372 (41%), Gaps = 40/372 (10%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAG 161
           R   RG + +   + ++V+ L K G  +  +N +  M+   +   +  F +I DS C   
Sbjct: 139 RMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYR 198

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221
             D+A+  F  M   G+  +VV  +SL+S +C     +  +    + ++K ++P+  +F 
Sbjct: 199 HVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFN 258

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L++ + KEG   EA K   +M++R   +P+ +  Y + +       ++D+A +    M 
Sbjct: 259 ALIDAFVKEGKFVEAEKLHDDMIKR-SIDPD-IFTYNSLINGFCMHDRLDKAKQMFEFMV 316

Query: 282 GENCFPTLKFFSNALDILVKL-----------------------------------NDST 306
            ++CFP L  ++  +    K                                     D  
Sbjct: 317 SKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCD 376

Query: 307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM 366
           +A +++  MV  G  + P+++ Y+ ++  LCNN  ++     FD M       D   Y  
Sbjct: 377 NAQKVFKQMVSDG--VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTT 434

Query: 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 426
           + E + K  +V +    F  +     +P  +   T I+ L      + A  +   + E+G
Sbjct: 435 MIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDG 494

Query: 427 ILPLEASANELL 438
            LP   + N L+
Sbjct: 495 PLPDSGTYNTLI 506



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 71/322 (22%), Positives = 134/322 (41%), Gaps = 6/322 (1%)

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN-QTSRALEFLNRVKKI-VDPDGDS 219
           K D+A+  F  M        +   N LLSAI + +      +L  L ++ K+  +P   +
Sbjct: 22  KLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLALLGKMMKLGYEPSIVT 81

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
            + LL G+     + +A     +MVE   + P+  + + T +  L    +  EA+  +  
Sbjct: 82  LSSLLNGYCHGKRISDAVALVDQMVE-MGYRPD-TITFTTLIHGLFLHNKASEAVALVDR 139

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
           M    C P L  +   ++ L K  D   A  L + M      +  +++++N +I  LC  
Sbjct: 140 MVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAA--KIEADVVIFNTIIDSLCKY 197

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
             VD+    F +M   G  P+ +TY+ +  CL    R  +  +   +MI+ +  P  +  
Sbjct: 198 RHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTF 257

Query: 400 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
              I   +   +   A ++ + +++  I P   + N L+ G     RL   ++  E M++
Sbjct: 258 NALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVS 317

Query: 460 RRILIYEVTMHKLKKAFYNESR 481
           +       T + L K F    R
Sbjct: 318 KDCFPDLDTYNTLIKGFCKSKR 339


>gi|302763707|ref|XP_002965275.1| hypothetical protein SELMODRAFT_83272 [Selaginella moellendorffii]
 gi|300167508|gb|EFJ34113.1| hypothetical protein SELMODRAFT_83272 [Selaginella moellendorffii]
          Length = 445

 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 123/282 (43%), Gaps = 16/282 (5%)

Query: 183 VAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
           V+ N+L+ A+C          E     K+ V P+  ++  +  G  K G ++EA +  G 
Sbjct: 84  VSYNTLIDALCSSGRIQEAREELQAMAKRGVAPNRVTYNAMATGLGKAGLLDEAFELMGV 143

Query: 243 M------VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
           M      +    +NP  V+ +      L +  + DEA K +  M   N  P +   +  L
Sbjct: 144 MESAGFALTAVTFNP--VVEF------LCKSGKPDEACKVMETMLLRNIEPNILTLNLIL 195

Query: 297 DILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG 356
               K      A+ + DIMV +GF   P ++ +NA++ L CN D +D+     + M    
Sbjct: 196 HAFCKAARPEEALGMTDIMVEMGF--CPTIVTFNALLELFCNTDQMDSAAELLETMARSK 253

Query: 357 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 416
             P+ +TY+++ +   +  R+ E   F  +++   + P  L C   +  L    E ++A 
Sbjct: 254 CKPNFVTYSIMVQKFAEMGRMVEARAFLEQLVVCGYAPNLLVCNAYVAGLCKTGEMDLAS 313

Query: 417 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
                + E G     A+ N L+ G   LGR+ +  R  EEM+
Sbjct: 314 RFLTVMAEEGCRANTATYNSLVEGFCKLGRMDEAERVLEEMI 355



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 142/342 (41%), Gaps = 11/342 (3%)

Query: 75  TGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQM 132
           TG+ P   +V   L L   S +  VD  +         P   ++N ++D L  +GR ++ 
Sbjct: 43  TGMSPGSLVVLHNLMLKGFSEARLVDEAKSHLHRMDCKPNSVSYNTLIDALCSSGRIQEA 102

Query: 133 WNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              ++ M + GV  +  T+ ++      AG  DEA     VM   G     V  N ++  
Sbjct: 103 REELQAMAKRGVAPNRVTYNAMATGLGKAGLLDEAFELMGVMESAGFALTAVTFNPVVEF 162

Query: 192 ICR--QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW 249
           +C+  + ++  + +E +  + + ++P+  +  ++L  + K    EEA      MVE   +
Sbjct: 163 LCKSGKPDEACKVMETM--LLRNIEPNILTLNLILHAFCKAARPEEALGMTDIMVE-MGF 219

Query: 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV 309
            P  ++ +   L       Q+D A + L  M    C P    +S  +    ++     A 
Sbjct: 220 CPT-IVTFNALLELFCNTDQMDSAAELLETMARSKCKPNFVTYSIMVQKFAEMGRMVEAR 278

Query: 310 QLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFE 369
              + +V  G+   PNL++ NA +  LC   ++D   RF   M   G   ++ TYN + E
Sbjct: 279 AFLEQLVVCGYA--PNLLVCNAYVAGLCKTGEMDLASRFLTVMAEEGCRANTATYNSLVE 336

Query: 370 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
              K  R+ E E+   EMI     P     +  I  L  A +
Sbjct: 337 GFCKLGRMDEAERVLEEMIAEGSLPDSTTYSVLIQGLCSAGQ 378



 Score = 38.5 bits (88), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 37/175 (21%), Positives = 70/175 (40%), Gaps = 3/175 (1%)

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           PN + YN +I  LC++  +         M   G  P+ +TYN +   L K   + E  + 
Sbjct: 81  PNSVSYNTLIDALCSSGRIQEAREELQAMAKRGVAPNRVTYNAMATGLGKAGLLDEAFEL 140

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
              M    +  T +     +  L  + +P+ A ++   +L   I P   + N +L     
Sbjct: 141 MGVMESAGFALTAVTFNPVVEFLCKSGKPDEACKVMETMLLRNIEPNILTLNLILHAFCK 200

Query: 444 LGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLER-RCK 495
             R  +     + M+        VT + L + F N  +  S  ++ +++ R +CK
Sbjct: 201 AARPEEALGMTDIMVEMGFCPTIVTFNALLELFCNTDQMDSAAELLETMARSKCK 255


>gi|297740763|emb|CBI30945.3| unnamed protein product [Vitis vinifera]
          Length = 796

 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 90/388 (23%), Positives = 164/388 (42%), Gaps = 15/388 (3%)

Query: 81  PDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLS------PYAWNLMVDVLGKNGRFEQMWN 134
           P  V  VLQL  D    A+ FF WA R  R        P A+  ++    + G+      
Sbjct: 195 PRQVCAVLQLQTDE-RVALRFFYWADRQWRYRHDPIRRPEAFGYVMVSYSRAGKLRNAMR 253

Query: 135 AVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC 193
            + +M++ G+   L    +         + D+AV   + M +  +E +V+  N L+   C
Sbjct: 254 VLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLERMQIVEIEPNVITYNCLIKGYC 313

Query: 194 RQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
              ++   A+E +  +  K   PD  S+  ++    KE  ++E      +M++     P+
Sbjct: 314 -DLHRLEDAMELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKEVRLLMEKMLKDSNLLPD 372

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF-FSNALDILVKLNDSTHAVQL 311
            V  Y TF+  L +    DEAL+FLR  + E  F   K  +S  +    +      A ++
Sbjct: 373 QV-TYNTFVHMLSKHGHGDEALEFLREAE-ERRFRVDKVGYSAIVHSFCREGRMDKAKEI 430

Query: 312 WDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECL 371
            + M   G   +P+++ Y +VI  LC    VD   +   QM  HG  P++++Y  +   L
Sbjct: 431 VNEMFSKG--CIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGL 488

Query: 372 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 431
            KN    E  +  +   ++ W P  +  +  +       +   A ++   +++ G  P  
Sbjct: 489 CKNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTP 548

Query: 432 ASANELLVGLRNLGRLSDVRRFAEEMLN 459
              N L+  L    ++ + +RF E+ LN
Sbjct: 549 VEINLLIQSLCQEEKVDEAKRFMEQCLN 576



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 155/368 (42%), Gaps = 9/368 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N  V +L K+G  ++    +R  +E    +    +++I  S+C  G+ D+A    + M
Sbjct: 375 TYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEM 434

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGN 232
              G   DVV   S+++ +C QE +  +A + L ++ K    P+  S+  LL G  K GN
Sbjct: 435 FSKGCIPDVVTYTSVINGLC-QERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGN 493

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
             EA +    M E   W P + + Y   +    R  +  EA   +R M  +  FPT    
Sbjct: 494 SLEAREMMN-MSEEDWWIP-NAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEI 551

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  +  L +      A +  +  +  G  +  N++ +  VI   C  DD++      D M
Sbjct: 552 NLLIQSLCQEEKVDEAKRFMEQCLNNGCAV--NVVNFTTVIHGFCQKDDLEAALSLLDDM 609

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
                 PD +TY  I + L K  R+ E  K   +M++    PTP+   T I         
Sbjct: 610 YLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGLIPTPVTYRTVIHQYCRMGRV 669

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
           E  +++   +L         + N+++  L + G L    +   ++L     I   T H L
Sbjct: 670 EDLLKLLEKMLSRQ--ECRTAYNQVIEKLCSFGNLEQAYKLLGKVLRTASKIDANTCHML 727

Query: 473 KKAFYNES 480
            +++ ++ 
Sbjct: 728 IESYLSKG 735


>gi|15224671|ref|NP_180698.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
 gi|75206083|sp|Q9SIC9.1|PP178_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g31400, chloroplastic; Flags: Precursor
 gi|4589961|gb|AAD26479.1| unknown protein [Arabidopsis thaliana]
 gi|330253448|gb|AEC08542.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
          Length = 918

 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 136/304 (44%), Gaps = 41/304 (13%)

Query: 108 GQRLSPYAWNLMVDVLGKNG-RFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           G R +   +N ++D  GK G  F+Q+      M+ +GV     TF S+       G ++ 
Sbjct: 298 GLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEA 357

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR--VKKIVDPDGDSFAIL 223
           A   FD M+   +EQDV + N+LL AIC+   Q   A E L +  VK+I+ P+  S++ +
Sbjct: 358 ARNLFDEMTNRRIEQDVFSYNTLLDAICKG-GQMDLAFEILAQMPVKRIM-PNVVSYSTV 415

Query: 224 LEGWEKEGNVEEANKTFGEM------VERFEWN--------------------------- 250
           ++G+ K G  +EA   FGEM      ++R  +N                           
Sbjct: 416 IDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGI 475

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
            + V+ Y   L    +  + DE  K    MK E+  P L  +S  +D   K      A++
Sbjct: 476 KKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAME 535

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
           ++      G  L  ++++Y+A+I  LC N  V +     D+M   G  P+ +TYN I + 
Sbjct: 536 IFREFKSAG--LRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDA 593

Query: 371 LIKN 374
             ++
Sbjct: 594 FGRS 597



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 98/257 (38%), Gaps = 8/257 (3%)

Query: 231 GNVEEANKTFGE---MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
           GN  E +K  G     V+R     E        + TL R  +V  A +            
Sbjct: 207 GNRNECDKAVGFYEFAVKRERRKNEQGKLASAMISTLGRYGKVTIAKRIFETAFAGGYGN 266

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD--NV 345
           T+  FS  +    +      A+ +++ M   G  L PNL+ YNAVI   C    ++   V
Sbjct: 267 TVYAFSALISAYGRSGLHEEAISVFNSMKEYG--LRPNLVTYNAVIDA-CGKGGMEFKQV 323

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
            +FFD+M  +G  PD +T+N +     +          F EM     +    +  T +  
Sbjct: 324 AKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDA 383

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 465
           +    + ++A EI   +    I+P   S + ++ G    GR  +      EM    I + 
Sbjct: 384 ICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALD 443

Query: 466 EVTMHKLKKAFYNESRS 482
            V+ + L   +    RS
Sbjct: 444 RVSYNTLLSIYTKVGRS 460



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 2/99 (2%)

Query: 98  AVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFD 155
           A+D  R  A  G +     +N ++   GK G+++++      MK + VL +L T++++ D
Sbjct: 463 ALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLID 522

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194
            Y   G Y EA+  F      G+  DVV  ++L+ A+C+
Sbjct: 523 GYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCK 561


>gi|115445137|ref|NP_001046348.1| Os02g0226900 [Oryza sativa Japonica Group]
 gi|49388538|dbj|BAD25660.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|49388672|dbj|BAD25856.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113535879|dbj|BAF08262.1| Os02g0226900 [Oryza sativa Japonica Group]
          Length = 637

 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 91/416 (21%), Positives = 174/416 (41%), Gaps = 46/416 (11%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCG-AGKYDE 165
           +G +L  +A+N+++D L K G  +Q +     MK+   +      +I     G AG+  +
Sbjct: 215 KGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQKHCVPDAYTYTILIRMSGKAGRTSK 274

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICR-------------------QENQTSRALEF- 205
            +  FD M   G   +++A N+++ A+ +                   Q NQ + ++   
Sbjct: 275 FLSFFDEMVSKGCVLNLIAFNTIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLD 334

Query: 206 -------LNRVKKIVD-----PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH 253
                  L+R+ +++D      +   ++ L++   K G+  EA+  F  M     WN   
Sbjct: 335 ILATEGQLHRLNEVLDICSRFMNRSIYSYLVKSLCKSGHASEAHNVFCRM-----WNSHE 389

Query: 254 VL---AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
                A+ + L  L   ++  EA+  L +M  +     +  ++     L KL   +    
Sbjct: 390 KGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISN 449

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
           L+D M   G  ++P++  YN +I        VD     F+ M      PD +TYN +  C
Sbjct: 450 LFDKMKTNG--IIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINC 507

Query: 371 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 430
           L K+  + E    F EM +  + P     +  I     +++ E+A  +++ ++  G  P 
Sbjct: 508 LGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPN 567

Query: 431 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDI 486
             + N LL  L   G+  +  +  E M  + ++   +T   L++    ESRS R +
Sbjct: 568 IVTYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSITYSILERL---ESRSQRTV 620



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 128/275 (46%), Gaps = 19/275 (6%)

Query: 116 WNLMVDVLGKNGR-------FEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVM 168
           ++ +V  L K+G        F +MWN+      D       F S+ +  C A K  EA+ 
Sbjct: 361 YSYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDA------FVSMLEVLCNAEKTLEAID 414

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGW 227
              +M   G+  DV   N + SA+ + + Q S      +++K   + PD  ++ I++  +
Sbjct: 415 LLHMMPEKGIVTDVGMYNMVFSALGKLK-QVSFISNLFDKMKTNGIIPDVFTYNIMISSY 473

Query: 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
            + G V++A++ F E++E     P+ V+ Y + +  L +   +DEA    + M+ +   P
Sbjct: 474 GRVGLVDKASELF-EVMEASSCKPD-VVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDP 531

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFR 347
            +  +S  ++   K N    A  L+D M+  G    PN++ YN ++  L      +   +
Sbjct: 532 DVFTYSILIECFGKSNKVEMACSLFDEMISEGCT--PNIVTYNILLDCLERRGKTEEAHK 589

Query: 348 FFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
            ++ M   G  PDS+TY+++     +++R   + K
Sbjct: 590 LYETMKQQGLIPDSITYSILERLESRSQRTVRIRK 624



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 74/344 (21%), Positives = 132/344 (38%), Gaps = 34/344 (9%)

Query: 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204
           LS  T+  I  ++  + +  +    ++ M   G + D+ A N LL A+ +      +A +
Sbjct: 184 LSGYTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKA-GMVDQAFQ 242

Query: 205 FLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT 263
               +K K   PD  ++ IL+    K G   +    F EMV +      +++A+ T +  
Sbjct: 243 VFEDMKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSK--GCVLNLIAFNTIIEA 300

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV------KLND------------- 304
           L + K VD+ +  L  M   +C P    +S  LDIL       +LN+             
Sbjct: 301 LGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEVLDICSRFMNRSI 360

Query: 305 ----------STHAVQLWDIMVGI-GFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
                     S HA +  ++   +   +   +   + +++ +LCN +           M 
Sbjct: 361 YSYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMP 420

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G   D   YNM+F  L K K+V  +   F +M  N   P        I+        +
Sbjct: 421 EKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVD 480

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
            A E++  +  +   P   + N L+  L   G L +     +EM
Sbjct: 481 KASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEM 524


>gi|357499119|ref|XP_003619848.1| CCP [Medicago truncatula]
 gi|355494863|gb|AES76066.1| CCP [Medicago truncatula]
          Length = 556

 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 121/261 (46%), Gaps = 8/261 (3%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF  + D++C  GK  EA   F++M   G + D+V  N+L+S  C   N       F   
Sbjct: 296 TFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLISGHCLHGNVLEARKLFDTV 355

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
            ++ + PD  S+ IL+ G+ K   ++EA   F EM  R +     ++ Y + +  L +  
Sbjct: 356 FERGILPDVWSYTILIIGYCKCKRIDEAVSLFNEM--RCKNMVLDIVLYSSLIDGLCKSG 413

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           ++  A +    +  +   P +  ++  +D   K+ D    ++L+ +M G G  L P ++ 
Sbjct: 414 RISYAWELFSTINNDGPPPNVITYNILIDAFCKIQDIDMGIELFKLMCGKG--LTPTVLT 471

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           YN +I   C +  +         M      PDS+TYN +F+ L K+ R+ +  + F  M 
Sbjct: 472 YNILINGYCKSKRIREAMNLLSVMQSKNLAPDSITYNSLFDGLCKSGRISDAWELFKVM- 530

Query: 389 KNEWQPTPLNCATAITMLLDA 409
                  P++ AT   +LLDA
Sbjct: 531 --HVGGPPVDVATY-NVLLDA 548



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 107/246 (43%), Gaps = 4/246 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ S+   +C  G++ E       M    +  +V   N L+ A CR+         F   
Sbjct: 261 TYTSLIRGFCRTGQWGEVKQLMCEMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLM 320

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           VK+   PD  +F  L+ G    GNV EA K F  + ER    P+ V +Y   +I   + K
Sbjct: 321 VKRGQQPDIVTFNTLISGHCLHGNVLEARKLFDTVFER-GILPD-VWSYTILIIGYCKCK 378

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           ++DEA+     M+ +N    +  +S+ +D L K    ++A +L+  +   G    PN+I 
Sbjct: 379 RIDEAVSLFNEMRCKNMVLDIVLYSSLIDGLCKSGRISYAWELFSTINNDGPP--PNVIT 436

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           YN +I   C   D+D     F  M   G  P  LTYN++     K+KR+ E       M 
Sbjct: 437 YNILIDAFCKIQDIDMGIELFKLMCGKGLTPTVLTYNILINGYCKSKRIREAMNLLSVMQ 496

Query: 389 KNEWQP 394
                P
Sbjct: 497 SKNLAP 502



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 70/339 (20%), Positives = 141/339 (41%), Gaps = 10/339 (2%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  F +I  S         A+     M   GV   +  ++  ++  C    +   A   
Sbjct: 83  SVIQFNTIIGSVVKMKHCPVAISLLKQMVFKGVTPSIFTLSIWINCYC-HLGEMGFAFSV 141

Query: 206 LNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L  V K+   P+  +   +++G    G V++A      +  +     E  + Y T +  L
Sbjct: 142 LGIVLKRGYQPNNITLTTVMKGLCINGEVQKAMDFHDNVAAQGMLLDE--VCYGTLINGL 199

Query: 265 IR-GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLM 323
            + G+ +D A + L+ M+G+   P +  ++  +D   K   +  A  L+  +V +G +  
Sbjct: 200 CKIGRSID-AFQLLQEMEGQVVKPNIVIYNMIIDSFCKDELTCKARDLYLKIVDMGID-- 256

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           P+++ Y ++I   C       V +   +MV     P+  T+N++ +   +  ++ E +  
Sbjct: 257 PDILTYTSLIRGFCRTGQWGEVKQLMCEMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGM 316

Query: 384 FHEMIKNEWQPTPLNCATAIT-MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 442
           F+ M+K   QP  +   T I+   L  +  E A ++++ + E GILP   S   L++G  
Sbjct: 317 FNLMVKRGQQPDIVTFNTLISGHCLHGNVLE-ARKLFDTVFERGILPDVWSYTILIIGYC 375

Query: 443 NLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
              R+ +      EM  + +++  V    L        R
Sbjct: 376 KCKRIDEAVSLFNEMRCKNMVLDIVLYSSLIDGLCKSGR 414



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 79/194 (40%), Gaps = 10/194 (5%)

Query: 289 LKFFSNA----LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
           L+FFS+       IL   N    AV L++ +  I    +P++I +N +IG +        
Sbjct: 45  LRFFSHCPKQNAKILSSFNGIDDAVTLFNHL--INMQPLPSVIQFNTIIGSVVKMKHCPV 102

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
                 QMVF G  P   T ++   C      +         ++K  +QP  +   T + 
Sbjct: 103 AISLLKQMVFKGVTPSIFTLSIWINCYCHLGEMGFAFSVLGIVLKRGYQPNNITLTTVMK 162

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNR 460
            L    E + A++  + +   G+L  E     L+ GL  +GR  D  +  +EM    +  
Sbjct: 163 GLCINGEVQKAMDFHDNVAAQGMLLDEVCYGTLINGLCKIGRSIDAFQLLQEMEGQVVKP 222

Query: 461 RILIYEVTMHKLKK 474
            I+IY + +    K
Sbjct: 223 NIVIYNMIIDSFCK 236



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 2/102 (1%)

Query: 98  AVDFFRW-AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFD 155
            ++ F+   G+G   +   +N++++   K+ R  +  N + VM+   +     T+ S+FD
Sbjct: 453 GIELFKLMCGKGLTPTVLTYNILINGYCKSKRIREAMNLLSVMQSKNLAPDSITYNSLFD 512

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
             C +G+  +A   F VM + G   DV   N LL A C+ ++
Sbjct: 513 GLCKSGRISDAWELFKVMHVGGPPVDVATYNVLLDAFCKAQD 554


>gi|15242557|ref|NP_195906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181167|sp|Q9LYZ9.1|PP362_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02860
 gi|7413561|emb|CAB86040.1| putative protein [Arabidopsis thaliana]
 gi|332003145|gb|AED90528.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 819

 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 88/387 (22%), Positives = 163/387 (42%), Gaps = 9/387 (2%)

Query: 96  SSAVDFFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASI 153
           SSA + F      G  L  Y++  ++     +GR+ +  N  + M+EDG   +L T+  I
Sbjct: 190 SSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVI 249

Query: 154 FDSYCGAGKYDEAVMSF-DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI 212
            + +   G     + S  + M   G+  D    N+L++  C++ +    A +    +K  
Sbjct: 250 LNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITC-CKRGSLHQEAAQVFEEMKAA 308

Query: 213 -VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD 271
               D  ++  LL+ + K    +EA K   EMV    ++P  ++ Y + +    R   +D
Sbjct: 309 GFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLN-GFSPS-IVTYNSLISAYARDGMLD 366

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA 331
           EA++    M  +   P +  ++  L    +      A+ +++ M   G    PN+  +NA
Sbjct: 367 EAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAG--CKPNICTFNA 424

Query: 332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391
            I +  N      + + FD++   G  PD +T+N +     +N    EV   F EM +  
Sbjct: 425 FIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAG 484

Query: 392 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 451
           + P      T I+        E A+ ++  +L+ G+ P  ++ N +L  L   G      
Sbjct: 485 FVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSE 544

Query: 452 RFAEEMLNRRILIYEVTMHKLKKAFYN 478
           +   EM + R    E+T   L  A+ N
Sbjct: 545 KVLAEMEDGRCKPNELTYCSLLHAYAN 571



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/356 (22%), Positives = 153/356 (42%), Gaps = 15/356 (4%)

Query: 111 LSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAV 167
           LSP    WN ++ V G+NG   ++    + MK  G V    TF ++  +Y   G +++A+
Sbjct: 450 LSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAM 509

Query: 168 MSFDVMSMHGVEQDVVAVNSLLSAICRQE--NQTSRALEFLNRVKKIVDPDGDSFAILLE 225
             +  M   GV  D+   N++L+A+ R     Q+ + L  +   +    P+  ++  LL 
Sbjct: 510 TVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGR--CKPNELTYCSLLH 567

Query: 226 GWEKEGNVEEAN--KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
            +    N +E     +  E V      P  VL  +T ++   +   + EA +    +K  
Sbjct: 568 AY---ANGKEIGLMHSLAEEVYSGVIEPRAVL-LKTLVLVCSKCDLLPEAERAFSELKER 623

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
              P +   ++ + I  +      A  + D M   GF   P++  YN+++ +   + D  
Sbjct: 624 GFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFT--PSMATYNSLMYMHSRSADFG 681

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
                  +++  G  PD ++YN +     +N R+ +  + F EM  +   P  +   T I
Sbjct: 682 KSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFI 741

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
                    E AI +  Y++++G  P + + N ++ G   L R  + + F E++ N
Sbjct: 742 GSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDLRN 797



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 72/351 (20%), Positives = 142/351 (40%), Gaps = 47/351 (13%)

Query: 116 WNLMVDVLGKNGR-FEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK-YDEAVMSFDVM 173
           +N++++V GK G  + ++ + V  MK DG+       +   + C  G  + EA   F+ M
Sbjct: 246 YNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEM 305

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGN 232
              G   D V  N+LL  +  + ++   A++ LN  V     P   ++  L+  + ++G 
Sbjct: 306 KAAGFSYDKVTYNALLD-VYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGM 364

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           ++EA +   +M E+       V  Y T L    R  +V+ A+     M+   C P +  F
Sbjct: 365 LDEAMELKNQMAEK--GTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTF 422

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN---DDVDNVFR-- 347
           +  + +       T  ++++D +   G  L P+++ +N ++ +   N    +V  VF+  
Sbjct: 423 NAFIKMYGNRGKFTEMMKIFDEINVCG--LSPDIVTWNTLLAVFGQNGMDSEVSGVFKEM 480

Query: 348 ------------------------------FFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
                                          + +M+  G  PD  TYN +   L +    
Sbjct: 481 KRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMW 540

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE----PEIAIEIWNYILE 424
            + EK   EM     +P  L   + +    +  E      +A E+++ ++E
Sbjct: 541 EQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIE 591


>gi|334183592|ref|NP_001185295.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179660|sp|Q9LQ15.1|PPR95_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62914, mitochondrial; Flags: Precursor
 gi|8493579|gb|AAF75802.1|AC011000_5 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats. EST gb|AA728420 comes from this gene
           [Arabidopsis thaliana]
 gi|332195900|gb|AEE34021.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 528

 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 146/305 (47%), Gaps = 6/305 (1%)

Query: 92  YDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPT 149
           ++  S AV    R   RG +     +  +V+ L K G  +   N +  M+   +  ++  
Sbjct: 196 HNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVI 255

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           ++++ DS C     D+A+  F  M   GV  +V+  +SL+S +C     +  +    + +
Sbjct: 256 YSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMI 315

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
           ++ ++P+  +F+ L++ + K+G + +A K + EM++R   +P ++  Y + +       +
Sbjct: 316 ERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKR-SIDP-NIFTYSSLINGFCMLDR 373

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY 329
           + EA + L +M  ++C P +  ++  ++   K       ++L+  M   G  L+ N + Y
Sbjct: 374 LGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRG--LVGNTVTY 431

Query: 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389
             +I       D DN    F QMV  G  P+ LTYN++ + L KN ++ +    F  + +
Sbjct: 432 TTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQR 491

Query: 390 NEWQP 394
           +  +P
Sbjct: 492 STMEP 496



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 145/355 (40%), Gaps = 18/355 (5%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           +L T+  + + +C   +   A+     M   G E D+V +NSLL+  C   N+ S A+  
Sbjct: 112 NLYTYNILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFC-HGNRISDAVAL 170

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           ++++ ++   PD  +F  L+ G        EA      MV+R    P+ V  Y   +  L
Sbjct: 171 VDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQR-GCQPDLV-TYGAVVNGL 228

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
            +    D AL  L  M+       +  +S  +D L K      A+ L+  M   G  + P
Sbjct: 229 CKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKG--VRP 286

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           N+I Y+++I  LCN     +  R    M+     P+ +T++ + +  +K  ++ + EK +
Sbjct: 287 NVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLY 346

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
            EMIK    P     ++ I      D    A ++   ++    LP   + N L+ G    
Sbjct: 347 EEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKA 406

Query: 445 GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQM 499
            R+        EM  R ++   VT   L   F+              R C  +QM
Sbjct: 407 KRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQ------------ARDCDNAQM 449



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 72/336 (21%), Positives = 141/336 (41%), Gaps = 4/336 (1%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  F+ +  +     K+D  +   + M + G+  ++   N L++  CR    +      
Sbjct: 77  SIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNILINCFCRCSRLSLALALL 136

Query: 206 LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
              +K   +PD  +   LL G+     + +A     +MVE   + P+ V  + T +  L 
Sbjct: 137 GKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVE-MGYKPDTV-TFTTLIHGLF 194

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN 325
              +  EA+  +  M    C P L  +   ++ L K  D+  A+ L + M      +  N
Sbjct: 195 LHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAA--KIEAN 252

Query: 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 385
           +++Y+ VI  LC     D+    F +M   G  P+ +TY+ +  CL    R  +  +   
Sbjct: 253 VVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLS 312

Query: 386 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
           +MI+ +  P  +  +  I   +   +   A +++  +++  I P   + + L+ G   L 
Sbjct: 313 DMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLD 372

Query: 446 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
           RL + ++  E M+ +  L   VT + L   F    R
Sbjct: 373 RLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKR 408



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 134/301 (44%), Gaps = 6/301 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF ++        K  EAV   D M   G + D+V   ++++ +C++   T  AL  LN+
Sbjct: 185 TFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKR-GDTDLALNLLNK 243

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           ++   ++ +   ++ +++   K  + ++A   F EM E     P +V+ Y + +  L   
Sbjct: 244 MEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEM-ENKGVRP-NVITYSSLISCLCNY 301

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
            +  +A + L  M      P L  FS  +D  VK      A +L++ M+    +  PN+ 
Sbjct: 302 GRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSID--PNIF 359

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            Y+++I   C  D +    +  + M+     P+ +TYN +     K KRV +  + F EM
Sbjct: 360 TYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREM 419

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
            +       +   T I     A + + A  ++  ++  G+ P   + N LL GL   G+L
Sbjct: 420 SQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKL 479

Query: 448 S 448
           +
Sbjct: 480 A 480



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/296 (19%), Positives = 108/296 (36%), Gaps = 68/296 (22%)

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM- 315
           Y   L T +   ++D+A+    VM     FP++  FS  L  + K+N     +   + M 
Sbjct: 46  YREVLRTGLSDIELDDAIGLFGVMAQSRPFPSIIEFSKLLSAIAKMNKFDLVISFGEKME 105

Query: 316 -VGIGFNLM-------------------------------PNLIMYNAVIGLLCNNDDVD 343
            +GI  NL                                P+++  N+++   C+ + + 
Sbjct: 106 ILGISHNLYTYNILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRIS 165

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
           +     DQMV  G  PD++T+  +   L  + +  E       M++   QP  +     +
Sbjct: 166 DAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVV 225

Query: 404 TMLLDADEPEIAIEIWNYI----------------------------------LEN-GIL 428
             L    + ++A+ + N +                                  +EN G+ 
Sbjct: 226 NGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVR 285

Query: 429 PLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMR 484
           P   + + L+  L N GR SD  R   +M+ R+I    VT   L  AF  + + ++
Sbjct: 286 PNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVK 341


>gi|259489858|ref|NP_001159344.1| uncharacterized protein LOC100304439 [Zea mays]
 gi|223943533|gb|ACN25850.1| unknown [Zea mays]
          Length = 322

 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 132/315 (41%), Gaps = 12/315 (3%)

Query: 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204
           LS  TF+++  SY  +   D+AV  F+ +   G  Q     N+LL A+C   N T  A +
Sbjct: 8   LSPTTFSAVISSYGHSRLPDQAVEVFNRLPRFGCPQTTEVYNALLDALCANGNFTG-AYK 66

Query: 205 FLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT 263
            L R+ +K V PD  +F+ L++ W   G ++EA     +M  R    P  V   +  +  
Sbjct: 67  LLRRMARKGVAPDRATFSTLVDSWCAAGKLQEAQAFLDDMAGRGLRPP--VRGRDLLVDG 124

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLM 323
           L+R   +++A  F   M  E   P +  F++  + L    D   AV L       G  L 
Sbjct: 125 LVRAGHLEQAKAFALRMTKEGILPDVATFNSLAEALCNAGDVDFAVSLLADASSRG--LC 182

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           P++  Y  ++  +     ++  FR F   V  G  P    Y  I + L K  R  +   F
Sbjct: 183 PDISTYKVMLPAVAKVGKIEEAFRLFYAAVEDGHRPFPSLYAAIIKALCKAGRFADAFAF 242

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL---ENGILPLEASANELLVG 440
           F +M      P        + M +        +E  NY++   E G  P   + + ++ G
Sbjct: 243 FGDMKTKGHPPNRPVYVMLVKMCVRGGR---FVEAANYLVEMSEAGFTPRAPTFSAVVDG 299

Query: 441 LRNLGRLSDVRRFAE 455
           LR+ G+    RR  +
Sbjct: 300 LRHCGKHDLARRLEQ 314



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 91/218 (41%), Gaps = 3/218 (1%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWN-AVRVMKEDGVLSLPTFASIFDSYCGAGKY 163
           AGRG R      +L+VD L + G  EQ    A+R+ KE  +  + TF S+ ++ C AG  
Sbjct: 107 AGRGLRPPVRGRDLLVDGLVRAGHLEQAKAFALRMTKEGILPDVATFNSLAEALCNAGDV 166

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
           D AV      S  G+  D+     +L A+ +          F   V+    P    +A +
Sbjct: 167 DFAVSLLADASSRGLCPDISTYKVMLPAVAKVGKIEEAFRLFYAAVEDGHRPFPSLYAAI 226

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           ++   K G   +A   FG+M  + + +P +   Y   +   +RG +  EA  +L  M   
Sbjct: 227 IKALCKAGRFADAFAFFGDM--KTKGHPPNRPVYVMLVKMCVRGGRFVEAANYLVEMSEA 284

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFN 321
              P    FS  +D L        A +L  + V +  N
Sbjct: 285 GFTPRAPTFSAVVDGLRHCGKHDLARRLEQLEVSLKGN 322


>gi|259490380|ref|NP_001159198.1| uncharacterized protein LOC100304284 [Zea mays]
 gi|223942589|gb|ACN25378.1| unknown [Zea mays]
 gi|414865313|tpg|DAA43870.1| TPA: hypothetical protein ZEAMMB73_208601 [Zea mays]
          Length = 519

 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 103/410 (25%), Positives = 175/410 (42%), Gaps = 20/410 (4%)

Query: 59  ILAHASSDDIESALACTGII---PTPDLVHEVLQLSYDSPSSAVDFFRWAG--RGQRLSP 113
           + + A+   +ESALA + +    P  D V    + ++  P  A+     A    G   SP
Sbjct: 50  VTSAATPSAMESALAASAVSLSSPLLDAVMRRFRFAHGDPLRALSLLSLAADRGGIAPSP 109

Query: 114 YAWNLMVDVLGKNGRFEQMWNAV---RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSF 170
           YA +  + VLG+  RF  MWN V   R +  D  L+  T   +           E V SF
Sbjct: 110 YAIDTALYVLGRARRFPHMWNLVANTRRICPDA-LTPRTAMIVLGRVAKVCSVRETVASF 168

Query: 171 DVMS--MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
             ++   H V+  V+  N+LL  +C QE   S A    + +K     +  +F ILL GW+
Sbjct: 169 RCLARLFHTVDPAVL-FNALLRTLC-QEKSMSDARNVFHALKYEFRVNRHTFNILLSGWK 226

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
              + E+A     EM E     P+ ++ Y + +    + + V +A K L  M+ ++  P 
Sbjct: 227 ---SAEDAEAFVTEMRE-LGVEPD-LVTYNSLIDCHCKNRDVQKAYKLLDEMRHKDISPD 281

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
           +  +++ +  L  +     A  L   M  +G    P++  YNA I        + + F  
Sbjct: 282 IITYTSLIGGLGLIGQPDKAKDLLKEMYELG--CYPDVPAYNAAIRNFVIAKRLGDAFAL 339

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
            DQMV  G  P+  TYN+ F C      +    + +  M      P   +C   I +   
Sbjct: 340 MDQMVSKGLMPNPTTYNLFFRCYYWAFDIGSAWRLYERMRSEGCYPNTQSCMFIIRLCHR 399

Query: 409 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
             +  +A+E+W+ ++ +    L   ++ LL  L + G+L D  R   +M+
Sbjct: 400 YGKVALALELWSDMVSSSFGSLTLVSDVLLDLLCDEGKLEDAERCFCQMV 449



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 54/264 (20%), Positives = 105/264 (39%), Gaps = 10/264 (3%)

Query: 139 MKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           M+E GV   L T+ S+ D +C      +A    D M    +  D++   SL+  +     
Sbjct: 238 MRELGVEPDLVTYNSLIDCHCKNRDVQKAYKLLDEMRHKDISPDIITYTSLIGGL-GLIG 296

Query: 198 QTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVL 255
           Q  +A + L  + ++   PD  ++   +  +     + +A     +MV +    NP    
Sbjct: 297 QPDKAKDLLKEMYELGCYPDVPAYNAAIRNFVIAKRLGDAFALMDQMVSKGLMPNPT--- 353

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
            Y  F         +  A +    M+ E C+P  +     + +  +      A++LW  M
Sbjct: 354 TYNLFFRCYYWAFDIGSAWRLYERMRSEGCYPNTQSCMFIIRLCHRYGKVALALELWSDM 413

Query: 316 VGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 375
           V   F  +  +      +  LC+   +++  R F QMV  G  P ++ +  I   +   K
Sbjct: 414 VSSSFGSLTLVSDVLLDL--LCDEGKLEDAERCFCQMVELGQKPSNVAFRRIKILMQLAK 471

Query: 376 RVHEVEKFFHEMIKNEWQPTPLNC 399
           +   + +   +MI+    P P++C
Sbjct: 472 QEESIARLTEKMIQFGRLP-PVDC 494



 Score = 45.8 bits (107), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 56/130 (43%)

Query: 348 FFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 407
           F  +M   G  PD +TYN + +C  KN+ V +  K   EM   +  P  +   + I  L 
Sbjct: 234 FVTEMRELGVEPDLVTYNSLIDCHCKNRDVQKAYKLLDEMRHKDISPDIITYTSLIGGLG 293

Query: 408 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEV 467
              +P+ A ++   + E G  P   + N  +       RL D     ++M+++ ++    
Sbjct: 294 LIGQPDKAKDLLKEMYELGCYPDVPAYNAAIRNFVIAKRLGDAFALMDQMVSKGLMPNPT 353

Query: 468 TMHKLKKAFY 477
           T +   + +Y
Sbjct: 354 TYNLFFRCYY 363


>gi|125604707|gb|EAZ43743.1| hypothetical protein OsJ_28367 [Oryza sativa Japonica Group]
          Length = 812

 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 92/386 (23%), Positives = 156/386 (40%), Gaps = 30/386 (7%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N+++D L K G           M + G++ ++  +  +  S C AGK DEAV     M 
Sbjct: 210 YNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMK 269

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG------DSFAILLEGWE 228
             G   D V  N+ LS +C+      R  E   R+  ++  DG        ++ L++G  
Sbjct: 270 DKGCLPDEVTYNAFLSGLCK----VGRVNEAFQRL--VMLQDGGFALGLKGYSCLIDGLF 323

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           +    +E    +  M+ER   +P+ VL Y   +       ++++AL FL VMK +   P 
Sbjct: 324 QARRFDEGFGYYKTMLER-NISPDVVL-YTIMIRGCAEAGRIEDALSFLDVMKKKGFVPD 381

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
              ++  L +L    D   A  L   M  +  NL+ +      +I  LC    VD   + 
Sbjct: 382 TFCYNTVLKVLCDHGDLERAHTLRSEM--LQNNLVLDSTTQTIMICGLCKRGLVDEAMQI 439

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
           FD+M  HG  P  +TYN + +   +  R+ E    FH+M         L        + D
Sbjct: 440 FDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGNNPSLFLRLTLGANQVCD 499

Query: 409 ADEPEI-------------AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 455
           ++                 A ++   I+++G++P   + N L+ GL     L    R  +
Sbjct: 500 SESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFK 559

Query: 456 EMLNRRILIYEVTMHKLKKAFYNESR 481
           E+  + I   E+T   L        R
Sbjct: 560 ELQLKGISPDEITYGTLIDGLLRAHR 585



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 98/421 (23%), Positives = 180/421 (42%), Gaps = 16/421 (3%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAG-----RGQRLSPYAWNLMVDVLGKNGRFEQMWN 134
           TP  V + L  +    +S +  F ++      R + L  +A +L++ +   +   E M++
Sbjct: 66  TPHAVSDALLCAAIPAASRLRLFLFSALSPRLRSRPLHAHAVSLLLRL--SSHADEAMFD 123

Query: 135 AVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC 193
           A+   +  G+  S   FA++  ++  AG+  +AV +F  M            N++L A+ 
Sbjct: 124 ALADARAAGLPASSSAFAALVAAHSSAGRNADAVQAFSRMDEFQSRPTAFVYNTILKALV 183

Query: 194 RQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
                   AL   NR V     P+  ++ +L++G  K+G   +A K F EM++R      
Sbjct: 184 -DSGVILLALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIM--P 240

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
           +V  Y   L +L    ++DEA++ L  MK + C P    ++  L  L K+     A Q  
Sbjct: 241 NVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRL 300

Query: 313 DIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 372
            ++   GF L   L  Y+ +I  L      D  F ++  M+     PD + Y ++     
Sbjct: 301 VMLQDGGFAL--GLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCA 358

Query: 373 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 432
           +  R+ +   F   M K  + P      T + +L D  + E A  + + +L+N ++    
Sbjct: 359 EAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDST 418

Query: 433 SANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSL 490
           +   ++ GL   G + +  +  +EM         +T + L   FY E R    R +F  +
Sbjct: 419 TQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKM 478

Query: 491 E 491
           E
Sbjct: 479 E 479



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 79/348 (22%), Positives = 146/348 (41%), Gaps = 20/348 (5%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDG--VLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           +N  +  L K GR  + +  + VM +DG   L L  ++ + D    A ++DE    +  M
Sbjct: 280 YNAFLSGLCKVGRVNEAFQRL-VMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTM 338

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGN 232
               +  DVV    ++   C +  +   AL FL+ +KK    PD   +  +L+     G+
Sbjct: 339 LERNISPDVVLYTIMIRG-CAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGD 397

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLIT-LIRGKQVDEALKFLRVMKGENCFPTLKF 291
           +E A+    EM++    N       +T +I  L +   VDEA++    M    C PT+  
Sbjct: 398 LERAHTLRSEMLQN---NLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMT 454

Query: 292 FSNALDILVKLNDSTHAVQLWDIM-----------VGIGFNLMPNLIMYNAVIGLLCNND 340
           ++  +D   +      A  L+  M           + +G N + +      ++  +C + 
Sbjct: 455 YNALIDGFYREGRLEEARMLFHKMEMGNNPSLFLRLTLGANQVCDSESLRKLVHDMCQSG 514

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
            V   ++    ++  G  PD +TYN +   L K + +    + F E+      P  +   
Sbjct: 515 QVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYG 574

Query: 401 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
           T I  LL A     A+ ++  IL++G  P  +  N ++  L  + +LS
Sbjct: 575 TLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLS 622



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 75/344 (21%), Positives = 146/344 (42%), Gaps = 27/344 (7%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCG-AGKYDEA 166
           G  L    ++ ++D L +  RF++ +   + M E  +       +I    C  AG+ ++A
Sbjct: 307 GFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDA 366

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICR----QENQTSRALEFLNRVKKIVDPDGDSFAI 222
           +   DVM   G   D    N++L  +C     +   T R+    N +      D  +  I
Sbjct: 367 LSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVL----DSTTQTI 422

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK------- 275
           ++ G  K G V+EA + F EM E    +P  V+ Y   +    R  +++EA         
Sbjct: 423 MICGLCKRGLVDEAMQIFDEMGEH-GCDPT-VMTYNALIDGFYREGRLEEARMLFHKMEM 480

Query: 276 ------FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY 329
                 FLR+  G N     +     +  + +      A +L   ++  G  ++P+++ Y
Sbjct: 481 GNNPSLFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSG--VVPDVVTY 538

Query: 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389
           N +I  LC   ++D   R F ++   G  PD +TY  + + L++  R ++    F  +++
Sbjct: 539 NTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQ 598

Query: 390 NEWQPTPLNCATAITMLLDADEPEIAIEIW-NYILENGILPLEA 432
           +   P+     + +  L    +   AI +W +Y+ +    P+E+
Sbjct: 599 SGSSPSLSIYNSMMRSLCRMKKLSQAINLWLDYLPKKYNFPVES 642



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 73/356 (20%), Positives = 149/356 (41%), Gaps = 19/356 (5%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
            +M+  L K G  ++       M E G   ++ T+ ++ D +   G+ +EA M F  M M
Sbjct: 421 TIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEM 480

Query: 176 HGVEQDVVAVNSLLSAICRQEN---------QTSRALEFLNRVKKIVD----PDGDSFAI 222
                  + +    + +C  E+         Q+ + L+    ++ I+D    PD  ++  
Sbjct: 481 GNNPSLFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNT 540

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+ G  K  N++ A + F E+  +   +P+ +  Y T +  L+R  + ++A+   + +  
Sbjct: 541 LINGLCKARNLDGAVRLFKELQLK-GISPDEI-TYGTLIDGLLRAHRENDAMMLFQNILQ 598

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL-MPNLIMYNAVIGLLCNNDD 341
               P+L  +++ +  L ++   + A+ LW   +   +N  + + ++ NA   +   +  
Sbjct: 599 SGSSPSLSIYNSMMRSLCRMKKLSQAINLWLDYLPKKYNFPVESEVLANAHKEI--EDGS 656

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
           +D+  R   ++     +  S  Y +    L + +R  +  + FH + +     TP  CA 
Sbjct: 657 LDDGVRELIKIDQEYGYISSNPYTIWLIGLCQVRRTDDALRIFHTLQEFGIDITPACCAL 716

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
            I  L        A++I  Y L   I+  +   N LL  L    R  D +  A  M
Sbjct: 717 LINYLCWDRNLNAAVDIMLYALSKSIILSQPVGNRLLRWLCICYRRQDAQALAWRM 772


>gi|224075357|ref|XP_002304600.1| predicted protein [Populus trichocarpa]
 gi|222842032|gb|EEE79579.1| predicted protein [Populus trichocarpa]
          Length = 641

 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 97/418 (23%), Positives = 184/418 (44%), Gaps = 36/418 (8%)

Query: 98  AVDFFRW--AGRGQRLSP--YAWNLMVDVLGKNGRFE---QMWNAVRVMKEDGVLSLPTF 150
           A++F+      +G  +SP    +NL++  + K G  +   QM+  + V K      + T+
Sbjct: 150 ALEFYNHVIGAKGVNISPNVLTFNLVIKTMCKVGLVDDAVQMFRDMPVSKCQP--DVYTY 207

Query: 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK 210
            ++ D  C A + DEAV   D M + G     V  N L++ +C++ +        L RV 
Sbjct: 208 CTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGD--------LARVA 259

Query: 211 KIVD--------PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI 262
           K+VD        P+  ++  L+ G   +G +E+A      MV   +  P +V+ Y T + 
Sbjct: 260 KLVDNMFLKGCAPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSS-KCVP-NVVTYGTIIN 317

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL 322
            L++  +  +  + L +M+          +S  +  L K   S  A+QL+  M      L
Sbjct: 318 GLVKQGRALDGARVLALMEERGYHVNEYVYSALISGLFKEGKSQEAMQLFKEMTVKECEL 377

Query: 323 MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
             N I+Y+AVI  LC +   D       +M  +   P++ TY+ + +   +    H+  +
Sbjct: 378 --NTIVYSAVIDGLCRDGKPDEALEVLSEMTNNRCKPNAYTYSSLMKGFFEAGNGHKAIE 435

Query: 383 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 442
            + +M K+ +    +  +  I  L    + + A+ +W  +L  G  P   +   ++ GL 
Sbjct: 436 MWKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWAQMLGKGCKPDVVAYGSMINGLS 495

Query: 443 NLGRLSDVRRFAEEMLNRR------ILIYEVTMHKLKKAFYNESRSMRDIFDSLERRC 494
           N G + D  +   EML +       ++ Y + ++ L K   + SR++  +   L+R C
Sbjct: 496 NAGLVEDALQLYNEMLCQEPDSQPDVVTYNILLNALCKQ-SSISRAIDLLNSMLDRGC 552



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 68/337 (20%), Positives = 143/337 (42%), Gaps = 37/337 (10%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +  +++ L K GR       + +M+E G  ++   ++++       GK  EA+  F  M
Sbjct: 311 TYGTIINGLVKQGRALDGARVLALMEERGYHVNEYVYSALISGLFKEGKSQEAMQLFKEM 370

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFL-----NRVKKIVDPDGDSFAILLEGWE 228
           ++   E + +  ++++  +CR + +   ALE L     NR K    P+  +++ L++G+ 
Sbjct: 371 TVKECELNTIVYSAVIDGLCR-DGKPDEALEVLSEMTNNRCK----PNAYTYSSLMKGFF 425

Query: 229 KEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
           + GN  +A + + +M +  F  N    + Y   +  L +  +V EA+     M G+ C P
Sbjct: 426 EAGNGHKAIEMWKDMAKHNFTQNE---VCYSVLIHGLCKDGKVKEAMMVWAQMLGKGCKP 482

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFR 347
            +  + + ++ L        A+QL++ M+    +  P+++ YN ++  LC    +     
Sbjct: 483 DVVAYGSMINGLSNAGLVEDALQLYNEMLCQEPDSQPDVVTYNILLNALCKQSSISRAID 542

Query: 348 FFDQMVFHGAFPDSLTYNMIFEC---------------------LIKNKRVHEVEKFFHE 386
             + M+  G  PD +T  +                         L+K +RV    K    
Sbjct: 543 LLNSMLDRGCDPDLVTCIIFLRTLREKLDPPQDGREFLDGLVVRLLKRQRVLGASKIVEV 602

Query: 387 MIKNEWQPTPLNCATAITMLLDADEPEIAIE-IWNYI 422
           M++    P P      +  L +  + + AI+  W+ +
Sbjct: 603 MLQKLLPPKPSTWTRVVEDLCNPKKVQAAIQKCWSIL 639



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 108/267 (40%), Gaps = 8/267 (2%)

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           F ++ + + K    E+A   F  M   FE     V ++ + L  +I+      AL+F   
Sbjct: 98  FVVIFKAYGKAHLPEKAVGLFDRMAYEFECK-RTVKSFNSVLNVIIQEGLFYRALEFYNH 156

Query: 280 M---KGENCFPTLKFFSNALDILVKLNDSTHAVQLW-DIMVGIGFNLMPNLIMYNAVIGL 335
           +   KG N  P +  F+  +  + K+     AVQ++ D+ V       P++  Y  ++  
Sbjct: 157 VIGAKGVNISPNVLTFNLVIKTMCKVGLVDDAVQMFRDMPVS---KCQPDVYTYCTLMDG 213

Query: 336 LCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 395
           LC  D +D      D+M   G FP  +T+N++   L K   +  V K    M      P 
Sbjct: 214 LCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLARVAKLVDNMFLKGCAPN 273

Query: 396 PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 455
            +   T I  L    + E AI + + ++ +  +P   +   ++ GL   GR  D  R   
Sbjct: 274 EVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGARVLA 333

Query: 456 EMLNRRILIYEVTMHKLKKAFYNESRS 482
            M  R   + E     L    + E +S
Sbjct: 334 LMEERGYHVNEYVYSALISGLFKEGKS 360



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 90/200 (45%), Gaps = 1/200 (0%)

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI-GFNLMPNLIMYNAVIGLLCNNDDVD 343
           C  T+K F++ L+++++      A++ ++ ++G  G N+ PN++ +N VI  +C    VD
Sbjct: 127 CKRTVKSFNSVLNVIIQEGLFYRALEFYNHVIGAKGVNISPNVLTFNLVIKTMCKVGLVD 186

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
           +  + F  M      PD  TY  + + L K  R+ E      EM  +   P+P+     I
Sbjct: 187 DAVQMFRDMPVSKCQPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLI 246

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
             L    +     ++ + +   G  P E + N L+ GL   G+L       + M++ + +
Sbjct: 247 NGLCKKGDLARVAKLVDNMFLKGCAPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCV 306

Query: 464 IYEVTMHKLKKAFYNESRSM 483
              VT   +      + R++
Sbjct: 307 PNVVTYGTIINGLVKQGRAL 326



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/180 (20%), Positives = 79/180 (43%), Gaps = 1/180 (0%)

Query: 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMS 169
           L+   ++ ++D L ++G+ ++    +  M  +    +  T++S+   +  AG   +A+  
Sbjct: 377 LNTIVYSAVIDGLCRDGKPDEALEVLSEMTNNRCKPNAYTYSSLMKGFFEAGNGHKAIEM 436

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK 229
           +  M+ H   Q+ V  + L+  +C+        + +   + K   PD  ++  ++ G   
Sbjct: 437 WKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWAQMLGKGCKPDVVAYGSMINGLSN 496

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
            G VE+A + + EM+ +   +   V+ Y   L  L +   +  A+  L  M    C P L
Sbjct: 497 AGLVEDALQLYNEMLCQEPDSQPDVVTYNILLNALCKQSSISRAIDLLNSMLDRGCDPDL 556


>gi|356529495|ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
          Length = 1205

 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 149/327 (45%), Gaps = 9/327 (2%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYD 164
           GR  + +   ++ ++D L K     + +     M   G+ + + T++++   +C  GK  
Sbjct: 192 GRLTKPNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLK 251

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAIL 223
           EA+   + M +  +  +V   N L+ A+C+ E +   A   L   +K  V PD  +++ L
Sbjct: 252 EAIGLLNEMVLKTINPNVYTYNILVDALCK-EGKVKEAKSVLAVMLKACVKPDVITYSTL 310

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           ++G+     V++A   F  M       P+ V  Y   +    + K VDEAL   + M  +
Sbjct: 311 MDGYFLVYEVKKAQHVFNAM-SLMGVTPD-VHTYTILINGFCKNKMVDEALNLFKEMHQK 368

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP-NLIMYNAVIGLLCNNDDV 342
           N  P +  +S+ +D L K   S     +WD++  +     P N+I Y+++I  LC N  +
Sbjct: 369 NMVPGIVTYSSLIDGLCK---SGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNGHL 425

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
           D     F++M   G  P++ T+ ++ + L K  R+ + ++ F +++   +          
Sbjct: 426 DRAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVM 485

Query: 403 ITMLLDADEPEIAIEIWNYILENGILP 429
           I         E A+ + + + +NG +P
Sbjct: 486 IDGHCKQGLLEEALTMLSKMEDNGCIP 512



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 137/316 (43%), Gaps = 4/316 (1%)

Query: 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204
           L+  ++ ++ +  C  G    A+     +     + +VV  ++++ A+C+ +  +     
Sbjct: 162 LNQVSYGTLINGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEAYGL 221

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           F     K +  D  +++ L+ G+  EG ++EA     EMV +   NP +V  Y   +  L
Sbjct: 222 FSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLK-TINP-NVYTYNILVDAL 279

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
            +  +V EA   L VM      P +  +S  +D    + +   A  +++ M  +G  + P
Sbjct: 280 CKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMG--VTP 337

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           ++  Y  +I   C N  VD     F +M      P  +TY+ + + L K+ R+  V    
Sbjct: 338 DVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLI 397

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
            EM         +  ++ I  L      + AI ++N + + GI P   +   LL GL   
Sbjct: 398 DEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNTFTFTILLDGLCKG 457

Query: 445 GRLSDVRRFAEEMLNR 460
           GRL D +   +++L +
Sbjct: 458 GRLKDAQEVFQDLLTK 473



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/329 (22%), Positives = 149/329 (45%), Gaps = 13/329 (3%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE-DGVLSLPT---FASIFDSYC 158
           +   +G +L+  ++  +++ + K G       A++++++ DG L+ P    +++I D+ C
Sbjct: 154 KLLAQGFQLNQVSYGTLINGVCKIGDTRA---AIKLLQKIDGRLTKPNVVMYSTIIDALC 210

Query: 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDG 217
                 EA   F  M++ G+  DVV  ++L+   C  E +   A+  LN  V K ++P+ 
Sbjct: 211 KYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFC-IEGKLKEAIGLLNEMVLKTINPNV 269

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            ++ IL++   KEG V+EA      M++     P+ V+ Y T +       +V +A    
Sbjct: 270 YTYNILVDALCKEGKVKEAKSVLAVMLKAC-VKPD-VITYSTLMDGYFLVYEVKKAQHVF 327

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337
             M      P +  ++  ++   K      A+ L+  M     N++P ++ Y+++I  LC
Sbjct: 328 NAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQK--NMVPGIVTYSSLIDGLC 385

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
            +  +  V+   D+M   G   + +TY+ + + L KN  +      F++M     +P   
Sbjct: 386 KSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNTF 445

Query: 398 NCATAITMLLDADEPEIAIEIWNYILENG 426
                +  L      + A E++  +L  G
Sbjct: 446 TFTILLDGLCKGGRLKDAQEVFQDLLTKG 474



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/348 (20%), Positives = 146/348 (41%), Gaps = 10/348 (2%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F  I DS+     Y  AV     + + G++ D++ +N L++  C    Q +     L ++
Sbjct: 62  FNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHM-GQITFGFSVLAKI 120

Query: 210 -KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLITLIRG 267
            K+   PD  +   L++G   +G V++A     +++ + F+ N    ++Y T +  + + 
Sbjct: 121 LKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQ---VSYGTLINGVCKI 177

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
                A+K L+ + G    P +  +S  +D L K    + A  L+  M   G +   +++
Sbjct: 178 GDTRAAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGIS--ADVV 235

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            Y+ +I   C    +       ++MV     P+  TYN++ + L K  +V E +     M
Sbjct: 236 TYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVM 295

Query: 388 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 447
           +K   +P  +  +T +       E + A  ++N +   G+ P   +   L+ G      +
Sbjct: 296 LKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMV 355

Query: 448 SDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLERR 493
            +     +EM  + ++   VT   L        R   + D+ D +  R
Sbjct: 356 DEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHDR 403



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 100/209 (47%), Gaps = 11/209 (5%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + + ++++   KN   ++  N  + M +  ++  + T++S+ D  C +G+        D 
Sbjct: 340 HTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDE 399

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEG 231
           M   G   +V+  +SL+  +C+      RA+   N++K + + P+  +F ILL+G  K G
Sbjct: 400 MHDRGQPANVITYSSLIDGLCKN-GHLDRAIALFNKMKDQGIRPNTFTFTILLDGLCKGG 458

Query: 232 NVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
            +++A + F +++ + +  N   V  Y   +    +   ++EAL  L  M+   C P   
Sbjct: 459 RLKDAQEVFQDLLTKGYHLN---VYTYNVMIDGHCKQGLLEEALTMLSKMEDNGCIPDAV 515

Query: 291 FFSNALDILVKLNDSTHAV----QLWDIM 315
            F   +  L K +++   V    ++W+I+
Sbjct: 516 TFEIIIIALFKKDENGGNVGFDKKVWEIV 544



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 54/258 (20%), Positives = 99/258 (38%), Gaps = 45/258 (17%)

Query: 139  MKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198
            M E GV S+  +  I   +     Y  AV     + + G++ D+  +N L++  C    Q
Sbjct: 920  MAERGVTSVGAYIRI--PHNPMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHM-GQ 976

Query: 199  TSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLA 256
             +     L ++ K+   PD  +F  L+ G   +G V +A     +++ + F+ N    ++
Sbjct: 977  ITFNFSILAKILKRGYHPDTITFTTLINGLCLKGQVNKALHFHDKLLAQGFQLNQ---VS 1033

Query: 257  YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
            Y T +  + +      A+K LR + G                L K               
Sbjct: 1034 YGTLINGVCKIGDTRAAIKLLRKIDGR---------------LTK--------------- 1063

Query: 317  GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
                   P+++MYN +I  LC +  V   +  F +M   G   D +TYN +        +
Sbjct: 1064 -------PDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGK 1116

Query: 377  VHEVEKFFHEMIKNEWQP 394
            + E     ++M+     P
Sbjct: 1117 LKEAIGLLNKMVLKTINP 1134



 Score = 43.5 bits (101), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 65/133 (48%), Gaps = 7/133 (5%)

Query: 103  RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCG 159
            +   +G +L+  ++  +++ + K G        +R  K DG L+ P    + +I D+ C 
Sbjct: 1021 KLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLR--KIDGRLTKPDVVMYNTIIDALCK 1078

Query: 160  AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGD 218
                 +A   F  M++ G+  DVV  N+L+   C    +   A+  LN+ V K ++P+  
Sbjct: 1079 HQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIV-GKLKEAIGLLNKMVLKTINPNVR 1137

Query: 219  SFAILLEGWEKEG 231
            ++ IL++   KEG
Sbjct: 1138 TYNILVDALCKEG 1150


>gi|255661030|gb|ACU25684.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 376

 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 86/362 (23%), Positives = 160/362 (44%), Gaps = 18/362 (4%)

Query: 109 QRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
            ++SP A  +N M++   + GR +       +M  +   ++ +F  +     G G  D+A
Sbjct: 19  SKVSPDAVVYNAMLNGFFRAGRIKDCIELWELMGREXSQNVVSFNIMMRGLFGNGDVDKA 78

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQE--NQTSRALEFLNRVKKIVDPDGDSFAILL 224
           +  +++M+  G  +D      L+   C+    N++ R LE       ++D    +++ ++
Sbjct: 79  ISIWELMTQSGFVEDSTTYGILVDGFCKNGYINKSLRVLEIAEEKGGVLDAF--AYSAMI 136

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G  KE  ++EA      M++       HV  Y T +   +   + D+A++  R M   N
Sbjct: 137 NGLCKEAKLDEAVSVLNGMIKNGGTPNAHV--YNTLINGFMGVSKFDDAIRVFREMGSTN 194

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
           C PT+  ++  ++ L K      A  L   M+  G+   P +I Y+ ++  LC    V+ 
Sbjct: 195 CSPTVVTYNTLINGLCKGERFAEAYDLVKEMLEKGWK--PCVITYSLLMKGLCQGHKVEM 252

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
             + ++Q++ +G  PD    N++   L    +       + +M  N W   P N  T  T
Sbjct: 253 ALQLWNQVISNGLKPDVQMLNILIHGLCSVGKTQLALMLYFDM--NRWNCAP-NLVTHNT 309

Query: 405 ML----LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           ++     D D    A+ IW  IL NG+ P   S N  L GL +  R+S    F ++ L +
Sbjct: 310 LMEGFYKDGDIRN-ALGIWARILRNGLQPDIVSYNITLKGLCSCSRISFAILFLQDALAK 368

Query: 461 RI 462
           +I
Sbjct: 369 KI 370



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 71/323 (21%), Positives = 134/323 (41%), Gaps = 5/323 (1%)

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG 217
           C +G  D A   +  M+   V  D V  N++L+   R   +    +E    + +    + 
Sbjct: 1   CESGDIDGAERVYKEMAESKVSPDAVVYNAMLNGFFRA-GRIKDCIELWELMGREXSQNV 59

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            SF I++ G    G+V++A   +  M +      E    Y   +    +   ++++L+ L
Sbjct: 60  VSFNIMMRGLFGNGDVDKAISIWELMTQ--SGFVEDSTTYGILVDGFCKNGYINKSLRVL 117

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337
            + + +        +S  ++ L K      AV + + M+  G    PN  +YN +I    
Sbjct: 118 EIAEEKGGVLDAFAYSAMINGLCKEAKLDEAVSVLNGMIKNGGT--PNAHVYNTLINGFM 175

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
                D+  R F +M      P  +TYN +   L K +R  E      EM++  W+P  +
Sbjct: 176 GVSKFDDAIRVFREMGSTNCSPTVVTYNTLINGLCKGERFAEAYDLVKEMLEKGWKPCVI 235

Query: 398 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
             +  +  L    + E+A+++WN ++ NG+ P     N L+ GL ++G+         +M
Sbjct: 236 TYSLLMKGLCQGHKVEMALQLWNQVISNGLKPDVQMLNILIHGLCSVGKTQLALMLYFDM 295

Query: 458 LNRRILIYEVTMHKLKKAFYNES 480
                    VT + L + FY + 
Sbjct: 296 NRWNCAPNLVTHNTLMEGFYKDG 318



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/333 (18%), Positives = 141/333 (42%), Gaps = 38/333 (11%)

Query: 98  AVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDS 156
            ++ +   GR    +  ++N+M+  L  NG  ++  +   +M + G V    T+  + D 
Sbjct: 44  CIELWELMGREXSQNVVSFNIMMRGLFGNGDVDKAISIWELMTQSGFVEDSTTYGILVDG 103

Query: 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDP 215
           +C  G  ++++   ++    G   D  A +++++ +C+ E +   A+  LN  +K    P
Sbjct: 104 FCKNGYINKSLRVLEIAEEKGGVLDAFAYSAMINGLCK-EAKLDEAVSVLNGMIKNGGTP 162

Query: 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK 275
           +   +  L+ G+      ++A + F EM      +P  V+ Y T +  L +G++  EA  
Sbjct: 163 NAHVYNTLINGFMGVSKFDDAIRVFREMGST-NCSPT-VVTYNTLINGLCKGERFAEAYD 220

Query: 276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG---------------- 319
            ++ M  +   P +  +S  +  L + +    A+QLW+ ++  G                
Sbjct: 221 LVKEMLEKGWKPCVITYSLLMKGLCQGHKVEMALQLWNQVISNGLKPDVQMLNILIHGLC 280

Query: 320 -----------------FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSL 362
                            +N  PNL+ +N ++     + D+ N    + +++ +G  PD +
Sbjct: 281 SVGKTQLALMLYFDMNRWNCAPNLVTHNTLMEGFYKDGDIRNALGIWARILRNGLQPDIV 340

Query: 363 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 395
           +YN+  + L    R+     F  + +  +  P+
Sbjct: 341 SYNITLKGLCSCSRISFAILFLQDALAKKIAPS 373


>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
 gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 87/402 (21%), Positives = 173/402 (43%), Gaps = 44/402 (10%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N++++   +  +       + ++MK     S+ T +S+ + YC   +  +AV   D 
Sbjct: 46  YTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQ 105

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEG 231
           M   G   D +   +L+  +    N+ S A+  ++R V++   P+  ++ +++ G  K G
Sbjct: 106 MVEMGYRPDTITFTTLIHGLFLH-NKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRG 164

Query: 232 NVEEANKTFGEM-VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           +++ A     +M   + E +   V+ + T + +L + + VD+AL   + M+ +   P + 
Sbjct: 165 DIDLAFNLLNKMEAAKIEAD---VVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVV 221

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVG-------IGFNLM-------------------- 323
            +S+ +  L      + A QL   M+        + FN +                    
Sbjct: 222 TYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDM 281

Query: 324 ------PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
                 P++  YN++I   C +D +D   + F+ MV    FPD  TYN + +   K+KRV
Sbjct: 282 IKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRV 341

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 437
            +  + F EM         +   T I  L    + + A +++  ++ +G+ P   + + L
Sbjct: 342 EDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSIL 401

Query: 438 LVGLRNLGRLSDVRRFAEEM----LNRRILIYEVTMHKLKKA 475
           L GL N G+L       + M    +   I IY   +  + KA
Sbjct: 402 LDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKA 443



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 133/309 (43%), Gaps = 12/309 (3%)

Query: 92  YDSPSSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPT 149
           Y     A++ F+    +G R +   ++ ++  L   GR+      +  M E  +  +L T
Sbjct: 198 YRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVT 257

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE--NQTSRALEFLN 207
           F ++ D++   GK+ EA    D M    ++ D+   NSL++  C  +  ++  +  EF+ 
Sbjct: 258 FNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFM- 316

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            V K   PD D++  L++G+ K   VE+  + F EM  R        + Y T +  L   
Sbjct: 317 -VSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGD--TVTYTTLIQGLFHD 373

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
              D A K  + M  +   P +  +S  LD L        A++++D M      L  ++ 
Sbjct: 374 GDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKL--DIY 431

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
           +Y  +I  +C    VD+ +  F  +   G  P+ +TYN +   L   + + E      +M
Sbjct: 432 IYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKM 491

Query: 388 IKNEWQPTP 396
              E  P P
Sbjct: 492 --KEDGPLP 498



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 78/371 (21%), Positives = 160/371 (43%), Gaps = 7/371 (1%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSF 170
           S + +N ++  + K  +F+ + +    M+  G+  +L T+  + + +C   +   A+   
Sbjct: 9   SIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALL 68

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEK 229
             M   G E  +V ++SLL+  C  + + S A+  ++++ ++   PD  +F  L+ G   
Sbjct: 69  GKMMKLGYEPSIVTLSSLLNGYCHGK-RISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 127

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
                EA      MV+R    P +++ Y   +  L +   +D A   L  M+       +
Sbjct: 128 HNKASEAVALVDRMVQR-GCQP-NLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADV 185

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
             F+  +D L K      A+ L+  M   G  + PN++ Y+++I  LC+     +  +  
Sbjct: 186 VIFNTIIDSLCKYRHVDDALNLFKEMETKG--IRPNVVTYSSLISCLCSYGRWSDASQLL 243

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 409
             M+     P+ +T+N + +  +K  +  E EK   +MIK    P      + I      
Sbjct: 244 SDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMH 303

Query: 410 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTM 469
           D  + A +++ +++     P   + N L+ G     R+ D      EM +R ++   VT 
Sbjct: 304 DRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTY 363

Query: 470 HKLKKAFYNES 480
             L +  +++ 
Sbjct: 364 TTLIQGLFHDG 374



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 81/384 (21%), Positives = 159/384 (41%), Gaps = 41/384 (10%)

Query: 92  YDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPT 149
           ++  S AV    R   RG + +   + ++V+ L K G  +  +N +  M+   +   +  
Sbjct: 128 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVI 187

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F +I DS C     D+A+  F  M   G+  +VV  +SL+S +C     +  +    + +
Sbjct: 188 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 247

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
           +K ++P+  +F  L++ + KEG   EA K   +M++R   +P+ +  Y + +       +
Sbjct: 248 EKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKR-SIDPD-IFTYNSLINGFCMHDR 305

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKL--------------------------- 302
           +D+A +    M  ++CFP L  ++  +    K                            
Sbjct: 306 LDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTT 365

Query: 303 --------NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
                    D  +A +++  MV  G  + P+++ Y+ ++  LCNN  ++     FD M  
Sbjct: 366 LIQGLFHDGDCDNAQKVFKQMVSDG--VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQK 423

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 414
                D   Y  + E + K  +V +    F  +     +P  +   T I+ L      + 
Sbjct: 424 SEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQE 483

Query: 415 AIEIWNYILENGILPLEASANELL 438
           A  +   + E+G LP   + N L+
Sbjct: 484 AYALLKKMKEDGPLPDSGTYNTLI 507



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 73/337 (21%), Positives = 143/337 (42%), Gaps = 6/337 (1%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  F  +  +     K+D  +   + M   G+  ++   N L++  CR+ +Q S AL  
Sbjct: 9   SIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRR-SQISLALAL 67

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L ++ K+  +P   + + LL G+     + +A     +MVE   + P+  + + T +  L
Sbjct: 68  LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVE-MGYRPD-TITFTTLIHGL 125

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
               +  EA+  +  M    C P L  +   ++ L K  D   A  L + M      +  
Sbjct: 126 FLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAA--KIEA 183

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           +++++N +I  LC    VD+    F +M   G  P+ +TY+ +  CL    R  +  +  
Sbjct: 184 DVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLL 243

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
            +MI+ +  P  +     I   +   +   A ++ + +++  I P   + N L+ G    
Sbjct: 244 SDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMH 303

Query: 445 GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
            RL   ++  E M+++       T + L K F    R
Sbjct: 304 DRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKR 340


>gi|449489553|ref|XP_004158346.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g55840-like [Cucumis sativus]
          Length = 1079

 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 83/384 (21%), Positives = 163/384 (42%), Gaps = 46/384 (11%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++N+++ VL   G+ ++  N + +M+ +G V ++ ++ ++    C  G++  A++    M
Sbjct: 177 SFNILISVLCVQGKLKKAVNILTMMERNGYVPTIVSYNTLLSWCCKKGRFKFALVLIHHM 236

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G++ DV   N  + ++CR        L       K++ P+  S+  L+ G+ KEG +
Sbjct: 237 ECKGIQADVCTYNMFIDSLCRNSRSAQGYLVLKKMRNKMITPNEVSYNTLINGFVKEGKI 296

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP---TLK 290
             A + F EM+E    +P +++ Y   +         +EAL+ L VM+  +  P   T+ 
Sbjct: 297 GVATRVFNEMIE-LNLSP-NLITYNILINGYCINGNFEEALRLLDVMEANDVRPNEVTIG 354

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
              N L    K + + + ++ + I          N I +  +I  LC N  +D  F+   
Sbjct: 355 TLLNGLYKSAKFDVARNILERYSIN-----RTSLNCISHTVMIDGLCRNGLLDEAFQLLI 409

Query: 351 QMVFHGAFPDSLTY-------------------------------NMIFECLIKNK---- 375
           +M   G +PD +T+                               N+IF  LI N     
Sbjct: 410 EMCKDGVYPDIITFSVLINGFCKVGNLNKAKEVMSKIYREGFVPNNVIFSTLIYNSCKVG 469

Query: 376 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 435
            V+E  KF+  M  N        C + +  L +  +   A E  ++I   G++P   + +
Sbjct: 470 NVYEGMKFYAAMNLNGQNADNFTCNSLVASLCENGKLVEAEEFLHHISRIGLVPNSVTFD 529

Query: 436 ELLVGLRNLGRLSDVRRFAEEMLN 459
            ++ G  N+G  S      ++M++
Sbjct: 530 CIINGYANVGDGSGAFSVFDKMIS 553



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 87/397 (21%), Positives = 176/397 (44%), Gaps = 26/397 (6%)

Query: 111 LSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAV 167
           LSP    +N++++    NG FE+    + VM+ + V  +  T  ++ +    + K+D A 
Sbjct: 311 LSPNLITYNILINGYCINGNFEEALRLLDVMEANDVRPNEVTIGTLLNGLYKSAKFDVAR 370

Query: 168 MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW 227
              +  S++    + ++   ++  +CR           +   K  V PD  +F++L+ G+
Sbjct: 371 NILERYSINRTSLNCISHTVMIDGLCRNGLLDEAFQLLIEMCKDGVYPDIITFSVLINGF 430

Query: 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK--GENC 285
            K GN+ +A +   + + R  + P +V+ + T +    +   V E +KF   M   G+N 
Sbjct: 431 CKVGNLNKAKEVMSK-IYREGFVPNNVI-FSTLIYNSCKVGNVYEGMKFYAAMNLNGQN- 487

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG-FNLMPNLIMYNAVIGLLCNNDDVDN 344
                F  N+L  +  L ++   V+  + +  I    L+PN + ++ +I    N  D   
Sbjct: 488 --ADNFTCNSL--VASLCENGKLVEAEEFLHHISRIGLVPNSVTFDCIINGYANVGDGSG 543

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
            F  FD+M+  G  P   TY  + + L K +   E  K   ++      P  ++  +  T
Sbjct: 544 AFSVFDKMISCGHHPSPFTYGSLLKVLCKGQNFWEARKLLKKL---HCIPLAVDTISYNT 600

Query: 405 MLLDADEPEI---AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461
           ++++  +      A+ ++  +++N ILP   +   +L GL   GRL     F   ++ + 
Sbjct: 601 LIVEISKSGNLLEAVRLFEEMIQNNILPDSYTYTCILSGLIREGRLVCAFIFLGRLMQKE 660

Query: 462 IL-----IYEVTMHKLKKAFYNESRSMRDIFDSLERR 493
           IL     +Y   +  L KA   +S++   +F  +E +
Sbjct: 661 ILTLNSIVYTCFIDGLFKA--GQSKAALYLFKEMEEK 695



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 118/295 (40%), Gaps = 41/295 (13%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           GQ    +  N +V  L +NG+  +    +  +   G++ +  TF  I + Y   G    A
Sbjct: 485 GQNADNFTCNSLVASLCENGKLVEAEEFLHHISRIGLVPNSVTFDCIINGYANVGDGSGA 544

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQEN--QTSRALEFLNRVKKIVDPDGDSFAILL 224
              FD M   G         SLL  +C+ +N  +  + L+ L+ +   VD    S+  L+
Sbjct: 545 FSVFDKMISCGHHPSPFTYGSLLKVLCKGQNFWEARKLLKKLHCIPLAVDTI--SYNTLI 602

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL-RVMKGE 283
               K GN+ EA + F EM++     P+    Y   L  LIR  ++  A  FL R+M+ E
Sbjct: 603 VEISKSGNLLEAVRLFEEMIQN-NILPDSY-TYTCILSGLIREGRLVCAFIFLGRLMQKE 660

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF----------------------- 320
                   ++  +D L K   S  A+ L+  M   G                        
Sbjct: 661 ILTLNSIVYTCFIDGLFKAGQSKAALYLFKEMEEKGLSLDLIALNSITDGYSRMGKVFSA 720

Query: 321 ----------NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYN 365
                     N++PNL  +N ++       D+ + F+ ++ M   G FP+ LTY+
Sbjct: 721 SSLISKTRNKNVIPNLTTFNILLHGYSRGQDIMSCFKLYNLMRRSGFFPNRLTYH 775



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 71/382 (18%), Positives = 148/382 (38%), Gaps = 46/382 (12%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT--FASIFDSYCGAGKYDEAVMSFD 171
           Y +  ++  L + GR    +  +  + +  +L+L +  +    D    AG+   A+  F 
Sbjct: 631 YTYTCILSGLIREGRLVCAFIFLGRLMQKEILTLNSIVYTCFIDGLFKAGQSKAALYLFK 690

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
            M   G+  D++A+NS+     R     S +        K V P+  +F ILL G+ +  
Sbjct: 691 EMEEKGLSLDLIALNSITDGYSRMGKVFSASSLISKTRNKNVIPNLTTFNILLHGYSRGQ 750

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           ++    K +  ++ R  + P   L Y + ++ L     ++  +K L++   E        
Sbjct: 751 DIMSCFKLY-NLMRRSGFFPNR-LTYHSLILGLCNHGMLELGIKMLKMFIAE-------- 800

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
            S+ +D L                             +N +I   C  +D+D V      
Sbjct: 801 -SSTIDDLT----------------------------FNMLIRKCCEINDLDKVIDLTHN 831

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M       D  T   + + L++         F HEM+K  + PT     T +  +    +
Sbjct: 832 MEVFRVSLDKDTQKAVTDVLVRRMVSQNYFVFMHEMLKKGFIPTSKQYCTMMKRMCRVGD 891

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL----IYEV 467
            + A ++ + ++  GI   +A+   ++ GL   G++ +     + ML  + +     +  
Sbjct: 892 IQGAFKLKDQMVALGISLDDAAECAMVRGLALCGKIEEAMWILQRMLRMKKIPTTSTFTT 951

Query: 468 TMHKL-KKAFYNESRSMRDIFD 488
            MH   KK  + E+ +++ + +
Sbjct: 952 LMHVFCKKDNFKEAHNLKILME 973



 Score = 47.0 bits (110), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 42/90 (46%)

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
           F  M+  G  P   T NMI   ++KN R H V  FF +M+ +   P   +    I++L  
Sbjct: 128 FSSMLIRGFKPSVYTCNMIMASMVKNCRAHLVWXFFKQMLTSRVCPNVSSFNILISVLCV 187

Query: 409 ADEPEIAIEIWNYILENGILPLEASANELL 438
             + + A+ I   +  NG +P   S N LL
Sbjct: 188 QGKLKKAVNILTMMERNGYVPTIVSYNTLL 217



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 65/141 (46%), Gaps = 3/141 (2%)

Query: 108  GQRLSPYAWNLMVDVLGKNGRFEQ-MWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
            G  L   A   MV  L   G+ E+ MW   R+++   + +  TF ++   +C    + EA
Sbjct: 906  GISLDDAAECAMVRGLALCGKIEEAMWILQRMLRMKKIPTTSTFTTLMHVFCKKDNFKEA 965

Query: 167  VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLE 225
                 +M  + V+ D+VA N L+SA C   +  + AL+F   +K K + P+  ++ +L+ 
Sbjct: 966  HNLKILMEHYRVKLDIVAYNVLISACCANGDVIT-ALDFYEEIKQKGLLPNMTTYRVLVS 1024

Query: 226  GWEKEGNVEEANKTFGEMVER 246
                +  V        ++ +R
Sbjct: 1025 AISTKHYVSRGEIVLKDLNDR 1045



 Score = 39.3 bits (90), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 36/175 (20%), Positives = 74/175 (42%), Gaps = 2/175 (1%)

Query: 307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM 366
           HAV  +  M+  GF   P++   N ++  +  N     V+ FF QM+     P+  ++N+
Sbjct: 123 HAVNTFSSMLIRGFK--PSVYTCNMIMASMVKNCRAHLVWXFFKQMLTSRVCPNVSSFNI 180

Query: 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 426
           +   L    ++ +       M +N + PT ++  T ++        + A+ + +++   G
Sbjct: 181 LISVLCVQGKLKKAVNILTMMERNGYVPTIVSYNTLLSWCCKKGRFKFALVLIHHMECKG 240

Query: 427 ILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
           I     + N  +  L    R +      ++M N+ I   EV+ + L   F  E +
Sbjct: 241 IQADVCTYNMFIDSLCRNSRSAQGYLVLKKMRNKMITPNEVSYNTLINGFVKEGK 295


>gi|449519270|ref|XP_004166658.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g19440, chloroplastic-like [Cucumis sativus]
          Length = 799

 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 152/355 (42%), Gaps = 42/355 (11%)

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
           +  AV  F +++  G    +   N  LS++ +  N+  +  E    + +   PD  SF  
Sbjct: 167 FSCAVDVFYLLARKGTFPSLKTCNFXLSSLVKA-NEFEKCCEVFRVMSEGACPDVFSFTN 225

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           ++    K G +E A + F +M E+   +P +V+ Y   +  L +  ++D A +    M  
Sbjct: 226 VINALCKGGKMENAIELFMKM-EKLGISP-NVVTYNCIINGLCQNGRLDNAFELKEKMTV 283

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
           +   P LK +   ++ L+KLN       + D M+G GFN  PN++++N +I   C   ++
Sbjct: 284 KGVQPNLKTYGALINGLIKLNFFDKVNHILDEMIGAGFN--PNVVVFNNLIDGYCKMGNI 341

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
           +   +  D M+     P S+T   + +   K+ ++   E    E++ +     P NC + 
Sbjct: 342 EGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYSV 401

Query: 403 I-------------------------------TMLL-----DADEPEIAIEIWNYILENG 426
           +                               TML+     D    E A E+W  +LE G
Sbjct: 402 VHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLE-ATELWFRLLEKG 460

Query: 427 ILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
               + ++N L+ GL   G+L +  R  +EML R + +  +T + L   F NE +
Sbjct: 461 SPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGK 515



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 93/451 (20%), Positives = 171/451 (37%), Gaps = 75/451 (16%)

Query: 96  SSAVD-FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIF 154
           S AVD F+  A +G   S    N  +  L K   FE+     RVM E     + +F ++ 
Sbjct: 168 SCAVDVFYLLARKGTFPSLKTCNFXLSSLVKANEFEKCCEVFRVMSEGACPDVFSFTNVI 227

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR----------QENQTSRA-- 202
           ++ C  GK + A+  F  M   G+  +VV  N +++ +C+          +E  T +   
Sbjct: 228 NALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQ 287

Query: 203 ---------------LEFLNRVKKIVD--------PDGDSFAILLEGWEKEGNVEEANKT 239
                          L F ++V  I+D        P+   F  L++G+ K GN+E A K 
Sbjct: 288 PNLKTYGALINGLIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLIDGYCKMGNIEGALKI 347

Query: 240 FGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA-------------------------- 273
              M+ +    P  V  Y + +    +  Q++ A                          
Sbjct: 348 KDVMISK-NITPTSVTLY-SLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYSVVHWL 405

Query: 274 ---------LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
                     +F ++M   N  P+    +  +  L K      A +LW  ++  G     
Sbjct: 406 CKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSP--A 463

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           + +  NA+I  LC    +    R   +M+  G   D +TYN +        +V    +  
Sbjct: 464 SKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLR 523

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
            EM K   QP        +  L +  + + AI++W+    +G++    +   ++ G    
Sbjct: 524 EEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKA 583

Query: 445 GRLSDVRRFAEEMLNRRILIYEVTMHKLKKA 475
            R+ DV     E+L++++ +  +  + + KA
Sbjct: 584 NRIEDVENLFNELLSKKMELNSIVYNIIIKA 614



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 128/296 (43%), Gaps = 11/296 (3%)

Query: 78  IPTPDLVHEVLQLSYDSPSSAVDFFRW----AGRGQRLSPYAWNLMVDVLGKNGRFEQMW 133
           +P   + +  L L + +       FR       RG +   Y +N ++  L   G+ +   
Sbjct: 496 LPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAI 555

Query: 134 NAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI 192
                 K  G++S + T+  + + YC A + ++    F+ +    +E + +  N ++ A 
Sbjct: 556 KLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAH 615

Query: 193 CRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           C+  N  + AL+ L  +K K + P+  +++ L+ G    G VE+A     EM  R E   
Sbjct: 616 CQNGN-VAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEM--RKEGFV 672

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
            +V+ Y   +    +  Q+D A      M   N  P    ++  +D   KL +   A  L
Sbjct: 673 PNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNL 732

Query: 312 WDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMI 367
              M   G  ++P+++ YN +    C  +D+DN F+  DQM   G   D +TY  +
Sbjct: 733 LIKMKESG--IVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTL 786



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 69/343 (20%), Positives = 144/343 (41%), Gaps = 9/343 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCG 159
           +FR   +G   S    N ++  L   G+  +    V+ M E G+ +   T+ ++   +C 
Sbjct: 453 WFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCN 512

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGD 218
            GK +      + M+  G++ D+   N LL  +C    +   A++  +  K   +  +  
Sbjct: 513 EGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNV-GKLDDAIKLWDEFKASGLISNIH 571

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
           ++ I++EG+ K   +E+    F E++ ++ E N    + Y   +    +   V  AL+ L
Sbjct: 572 TYGIMMEGYCKANRIEDVENLFNELLSKKMELNS---IVYNIIIKAHCQNGNVAAALQLL 628

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337
             MK +   P    +S+ +  +  +     A  L D M   GF  +PN++ Y A+IG  C
Sbjct: 629 ENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGF--VPNVVCYTALIGGYC 686

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
               +D     + +M+     P+  TY ++ +   K   + +      +M ++   P  +
Sbjct: 687 KLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVV 746

Query: 398 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 440
                      A++ + A ++ + +   G+   E +   L+ G
Sbjct: 747 TYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTLVHG 789



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 103/247 (41%), Gaps = 6/247 (2%)

Query: 232 NVEEANKTFG--EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
           ++E AN  FG   +V RFEW     L    +  T  R      A+    ++  +  FP+L
Sbjct: 128 HIEIANALFGLTSVVGRFEWTQAFDLLIHVY-STQFRNLGFSCAVDVFYLLARKGTFPSL 186

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
           K  +  L  LVK N+     +++ +M        P++  +  VI  LC    ++N    F
Sbjct: 187 KTCNFXLSSLVKANEFEKCCEVFRVM---SEGACPDVFSFTNVINALCKGGKMENAIELF 243

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 409
            +M   G  P+ +TYN I   L +N R+    +   +M     QP        I  L+  
Sbjct: 244 MKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKL 303

Query: 410 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTM 469
           +  +    I + ++  G  P     N L+ G   +G +    +  + M+++ I    VT+
Sbjct: 304 NFFDKVNHILDEMIGAGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTL 363

Query: 470 HKLKKAF 476
           + L + F
Sbjct: 364 YSLMQGF 370



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 88/432 (20%), Positives = 152/432 (35%), Gaps = 65/432 (15%)

Query: 63  ASSDDIESA------LACTGIIPTPDLVHEVL-----QLSYDSPSSAVDFFRWA----GR 107
             SD IE A      +  +G+   PD  + V+     +  Y S       FR+      R
Sbjct: 371 CKSDQIEHAENALEEILSSGLSIHPDNCYSVVHWLCKKFRYHSA------FRFTKMMLSR 424

Query: 108 GQRLSPYAWNLMVDVLGKNGRF---EQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYD 164
             R S     ++V  L K+G+     ++W   R++++    S  T  ++    CGAGK  
Sbjct: 425 NFRPSDLLLTMLVCGLCKDGKHLEATELW--FRLLEKGSPASKVTSNALIHGLCGAGKLP 482

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
           EA      M   G+  D +  N+L+   C                               
Sbjct: 483 EASRIVKEMLERGLPMDRITYNALILGFCN------------------------------ 512

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
                EG VE   +   EM +R    P+ +  Y   L  L    ++D+A+K     K   
Sbjct: 513 -----EGKVEGCFRLREEMTKR-GIQPD-IYTYNFLLRGLCNVGKLDDAIKLWDEFKASG 565

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
               +  +   ++   K N       L++ ++     L  N I+YN +I   C N +V  
Sbjct: 566 LISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMEL--NSIVYNIIIKAHCQNGNVAA 623

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
             +  + M   G  P+  TY+ +   +     V + +    EM K  + P  +     I 
Sbjct: 624 ALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIG 683

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 464
                 + + A   W  ++   I P + +   ++ G   LG +        +M    I+ 
Sbjct: 684 GYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVP 743

Query: 465 YEVTMHKLKKAF 476
             VT + L   F
Sbjct: 744 DVVTYNVLTNGF 755


>gi|297833654|ref|XP_002884709.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330549|gb|EFH60968.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 689

 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 94/399 (23%), Positives = 163/399 (40%), Gaps = 52/399 (13%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           +F  AG    L  Y  N+++ +  K   FE+    +  M ++G    + +++++ +    
Sbjct: 139 YFETAGVAPNLQTY--NVLIKMSCKKKEFEKARGFLNWMWKEGFKPDVFSYSTVINDLAK 196

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN---------------------- 197
            GK D+A+  FD MS   V  DV   N L+    ++++                      
Sbjct: 197 TGKLDDALELFDEMSERRVAPDVTCYNILIDGFLKEKDHKMAMQLWDKLLEDSSVYPNVK 256

Query: 198 -------------QTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
                        +    L+  +R+K+   + D  +++ L+ G   EGNV++A   F E+
Sbjct: 257 THNIMISGLSKCGRVDDCLKIWDRMKQNEREKDLYTYSSLIHGLCDEGNVDKAESVFNEL 316

Query: 244 VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK-- 301
           VER  +    V+ Y T L    R  ++ E+L+  R+M+  N    + +     +IL+K  
Sbjct: 317 VERKAFID--VVTYNTMLGGFCRCGKIKESLELWRIMEQRNSVNIVSY-----NILIKGL 369

Query: 302 LNDST--HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFP 359
           L +     A  +W +M   G+    +   Y   I  LC N  V+       ++   G   
Sbjct: 370 LENGKIDEATMIWRLMPAKGY--AADNTTYGIFIHGLCVNGYVNKALGVMQEVESKGGHL 427

Query: 360 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 419
           D   Y  I +CL K +R+ E      EM K+  +     C   I  L+       A  + 
Sbjct: 428 DVYAYASIIDCLCKKRRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLSDASLLM 487

Query: 420 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
             + +NG LP   S N L+ GL   G+  +   F +EML
Sbjct: 488 RGMGKNGCLPTVVSYNILICGLCEAGKFGEASAFVKEML 526



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 168/371 (45%), Gaps = 10/371 (2%)

Query: 117 NLMVDVLGKNGRFE---QMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           N+M+  L K GR +   ++W+  R+ + +    L T++S+    C  G  D+A   F+ +
Sbjct: 259 NIMISGLSKCGRVDDCLKIWD--RMKQNEREKDLYTYSSLIHGLCDEGNVDKAESVFNEL 316

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
                  DVV  N++L   CR   +   +LE    +++    +  S+ IL++G  + G +
Sbjct: 317 VERKAFIDVVTYNTMLGGFCRC-GKIKESLELWRIMEQRNSVNIVSYNILIKGLLENGKI 375

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           +EA   +  M  +  +  ++   Y  F+  L     V++AL  ++ ++ +     +  ++
Sbjct: 376 DEATMIWRLMPAK-GYAADNT-TYGIFIHGLCVNGYVNKALGVMQEVESKGGHLDVYAYA 433

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
           + +D L K      A  L   M   G  L  N  + NA+IG L  +  + +       M 
Sbjct: 434 SIIDCLCKKRRLEEASNLVKEMSKHGVEL--NSHVCNALIGGLIRDSRLSDASLLMRGMG 491

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
            +G  P  ++YN++   L +  +  E   F  EM++N  +P     +  +  L    + E
Sbjct: 492 KNGCLPTVVSYNILICGLCEAGKFGEASAFVKEMLENGLKPDLKTYSILLGGLCRDRKIE 551

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 473
           +A+E+W+  L++G+ P     N L+ GL ++G+L D       M +R      VT + L 
Sbjct: 552 LALELWHQFLQSGLEPDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLM 611

Query: 474 KAFYNESRSMR 484
           + ++    S R
Sbjct: 612 EGYFKVRDSNR 622



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 127/271 (46%), Gaps = 7/271 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDE 165
           +G  L  YA+  ++D L K  R E+  N V+ M + GV L+     ++        +  +
Sbjct: 423 KGGHLDVYAYASIIDCLCKKRRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLSD 482

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILL 224
           A +    M  +G    VV+ N L+  +C +  +   A  F+   ++  + PD  +++ILL
Sbjct: 483 ASLLMRGMGKNGCLPTVVSYNILICGLC-EAGKFGEASAFVKEMLENGLKPDLKTYSILL 541

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G  ++  +E A + + + ++     P+ V+ +   +  L    ++D+A+  +  M+  N
Sbjct: 542 GGLCRDRKIELALELWHQFLQS-GLEPD-VMMHNILIHGLCSVGKLDDAMTVMANMEHRN 599

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
           C   L  ++  ++   K+ DS  A  +W  M  +G  L P++I YN ++  LC    V  
Sbjct: 600 CTANLVTYNTLMEGYFKVRDSNRATVIWGYMYKMG--LQPDIISYNTILKGLCLCHRVSY 657

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 375
              FFD    HG FP   T+N++   ++  K
Sbjct: 658 AIEFFDDARNHGIFPTVYTWNILVRAVVNRK 688



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 77/342 (22%), Positives = 130/342 (38%), Gaps = 46/342 (13%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE----DGVLSLPTFASIFDSYCGAG 161
            +G       + + +  L  NG   +   A+ VM+E     G L +  +ASI D  C   
Sbjct: 387 AKGYAADNTTYGIFIHGLCVNGYVNK---ALGVMQEVESKGGHLDVYAYASIIDCLCKKR 443

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221
           + +EA      MS HGVE +    N+L+  + R    +  +L                  
Sbjct: 444 RLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLSDASL------------------ 485

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L+ G  K G +                    V++Y   +  L    +  EA  F++ M 
Sbjct: 486 -LMRGMGKNGCLPT------------------VVSYNILICGLCEAGKFGEASAFVKEML 526

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
                P LK +S  L  L +      A++LW   +  G  L P+++M+N +I  LC+   
Sbjct: 527 ENGLKPDLKTYSILLGGLCRDRKIELALELWHQFLQSG--LEPDVMMHNILIHGLCSVGK 584

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
           +D+       M       + +TYN + E   K +  +     +  M K   QP  ++  T
Sbjct: 585 LDDAMTVMANMEHRNCTANLVTYNTLMEGYFKVRDSNRATVIWGYMYKMGLQPDIISYNT 644

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
            +  L        AIE ++    +GI P   + N L+  + N
Sbjct: 645 ILKGLCLCHRVSYAIEFFDDARNHGIFPTVYTWNILVRAVVN 686



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 134/299 (44%), Gaps = 5/299 (1%)

Query: 152 SIFDSYCGAGKYDEAVMSFDVM-SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK 210
           S+  +Y      D A+  F  M  + G E  + + N+LL+A    +        F     
Sbjct: 83  SVIKTYGKNSMPDRALDVFKRMREIFGCEPGIRSYNTLLNAFVEAKQWVKVESLFAYFET 142

Query: 211 KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270
             V P+  ++ +L++   K+   E+A + F   + +  + P+ V +Y T +  L +  ++
Sbjct: 143 AGVAPNLQTYNVLIKMSCKKKEFEKA-RGFLNWMWKEGFKPD-VFSYSTVINDLAKTGKL 200

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYN 330
           D+AL+    M      P +  ++  +D  +K  D   A+QLWD ++    ++ PN+  +N
Sbjct: 201 DDALELFDEMSERRVAPDVTCYNILIDGFLKEKDHKMAMQLWDKLLEDS-SVYPNVKTHN 259

Query: 331 AVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 390
            +I  L     VD+  + +D+M  +    D  TY+ +   L     V + E  F+E+++ 
Sbjct: 260 IMISGLSKCGRVDDCLKIWDRMKQNEREKDLYTYSSLIHGLCDEGNVDKAESVFNELVER 319

Query: 391 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 449
           +     +   T +       + + ++E+W  + +   + +  S N L+ GL   G++ +
Sbjct: 320 KAFIDVVTYNTMLGGFCRCGKIKESLELWRIMEQRNSVNI-VSYNILIKGLLENGKIDE 377



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 83/189 (43%), Gaps = 4/189 (2%)

Query: 271 DEALK-FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY 329
           D AL  F R+ +   C P ++ ++  L+  V+         L+      G  + PNL  Y
Sbjct: 95  DRALDVFKRMREIFGCEPGIRSYNTLLNAFVEAKQWVKVESLFAYFETAG--VAPNLQTY 152

Query: 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389
           N +I + C   + +    F + M   G  PD  +Y+ +   L K  ++ +  + F EM +
Sbjct: 153 NVLIKMSCKKKEFEKARGFLNWMWKEGFKPDVFSYSTVINDLAKTGKLDDALELFDEMSE 212

Query: 390 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN-GILPLEASANELLVGLRNLGRLS 448
               P        I   L   + ++A+++W+ +LE+  + P   + N ++ GL   GR+ 
Sbjct: 213 RRVAPDVTCYNILIDGFLKEKDHKMAMQLWDKLLEDSSVYPNVKTHNIMISGLSKCGRVD 272

Query: 449 DVRRFAEEM 457
           D  +  + M
Sbjct: 273 DCLKIWDRM 281


>gi|255660990|gb|ACU25664.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
          Length = 376

 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 80/366 (21%), Positives = 166/366 (45%), Gaps = 14/366 (3%)

Query: 109 QRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
            ++SP A  +N M++   +  + +  +    +M  +G  S+ +F  +       GK DE 
Sbjct: 19  SKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNRSVSSFNIMMRGLFDNGKVDEV 78

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQE--NQTSRALEFLNRVKKIVDPDGDSFAILL 224
           +  +++M   G  +D +    L+   C+    +++   LE   +   ++D    +++ ++
Sbjct: 79  ISIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAQQKGGVLDAF--AYSAMI 136

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G  KE N++ A      M++       HV  Y T +  L+   + ++A++  R M   +
Sbjct: 137 NGLCKEANLDRAVSVLNGMIKSGCKPNAHV--YNTLINGLVGASKFEDAIRVFREMGTMH 194

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
           C PT+  ++  ++ L K      A  L   ++  G N  P +I Y+ ++  LC +  V+ 
Sbjct: 195 CSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLN--PGVITYSMLMKGLCLDHKVEK 252

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP--LNCATA 402
             + ++Q+   G  PD   +N++   L    ++      + +M  N W+  P  ++  T 
Sbjct: 253 ALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDM--NRWKCAPNLVSHNTL 310

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
           +       +   A+ IW  IL NG+ P   S N  L GL +  R+SD   F  + + ++I
Sbjct: 311 MEGFYKDGDIRNALVIWARILRNGLEPDIISYNITLKGLCSCNRISDAILFLHDAVTKKI 370

Query: 463 LIYEVT 468
           ++ ++T
Sbjct: 371 VLTKIT 376


>gi|240255563|ref|NP_190542.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546755|sp|P0C8A0.1|PP275_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49730
 gi|332645062|gb|AEE78583.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 638

 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 91/407 (22%), Positives = 166/407 (40%), Gaps = 10/407 (2%)

Query: 62  HASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLM 119
           H+    +E AL  +GI   P L+  VL    D+ +    FF WA +  G   S      M
Sbjct: 78  HSRVPKLELALNESGIDLRPGLIIRVLSRCGDAGNLGYRFFLWATKQPGYFHSYEVCKSM 137

Query: 120 VDVLGKNGRFEQMWNAVRVMKEDG--VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           V +L K  +F  +W  +  M++    ++    F  +   +  A    +AV   D M  +G
Sbjct: 138 VMILSKMRQFGAVWGLIEEMRKTNPELIEPELFVVLMRRFASANMVKKAVEVLDEMPKYG 197

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
           +E D      LL A+C+       A +    +++   P+   F  LL GW +EG + EA 
Sbjct: 198 LEPDEYVFGCLLDALCKN-GSVKEASKVFEDMREKFPPNLRYFTSLLYGWCREGKLMEAK 256

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297
           +   +M E     P+ ++ +   L       ++ +A   +  M+     P +  ++  + 
Sbjct: 257 EVLVQMKEA-GLEPD-IVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQ 314

Query: 298 ILVKLNDST-HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG 356
            L +       A++++  M   G     +++ Y A+I   C    +D  +   D M   G
Sbjct: 315 ALCRTEKRMDEAMRVFVEMERYGCE--ADIVTYTALISGFCKWGMIDKGYSVLDDMRKKG 372

Query: 357 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 416
             P  +TY  I     K ++  E  +   +M +    P  L     I +     E + A+
Sbjct: 373 VMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAV 432

Query: 417 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
            +WN +  NG+ P   +   ++ G  + G L +     +EM++R I 
Sbjct: 433 RLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGIF 479



 Score = 43.5 bits (101), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 33/161 (20%), Positives = 76/161 (47%), Gaps = 3/161 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +  ++    K G  ++ ++ +  M++ GV+ S  T+  I  ++    +++E +   + M
Sbjct: 344 TYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKM 403

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
              G   D++  N ++   C+   +   A+   N ++   + P  D+F I++ G+  +G 
Sbjct: 404 KRRGCHPDLLIYNVVIRLACKL-GEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGF 462

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
           + EA   F EMV R  ++       ++ L  L+R  +++ A
Sbjct: 463 LIEACNHFKEMVSRGIFSAPQYGTLKSLLNNLVRDDKLEMA 503


>gi|449440401|ref|XP_004137973.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Cucumis sativus]
          Length = 606

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 121/268 (45%), Gaps = 7/268 (2%)

Query: 109 QRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDE 165
           +RL P  Y +  +++   K G  +     V  M+  GV ++   F ++ D YC  G  DE
Sbjct: 326 RRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDE 385

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A+   ++M   G E D    N + S  CR   +       L   ++ V P+  SF+IL++
Sbjct: 386 ALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILID 445

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
            + KE N  EA + F  M ++       V+ Y  F+    +  +++EA K +  M+    
Sbjct: 446 IYCKEQNFAEARRLFKVMEKK--GKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGL 503

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P    +++ +D      +   A++L++ M  +G N   N++ Y  +I  L  +   D  
Sbjct: 504 MPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLN--RNVVTYTVIISGLSKDGRADEA 561

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIK 373
           F+ +D+M   G  PD   Y+ +   L K
Sbjct: 562 FKLYDEMNKEGIVPDDGIYSSLIASLHK 589



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/313 (21%), Positives = 132/313 (42%), Gaps = 6/313 (1%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           ++ T+  + + Y  + K +EA   FD M   G+E DV    S+++  C+  N     + F
Sbjct: 261 NVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLF 320

Query: 206 LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
               ++ + P+  ++  L+ G  K G ++ A     +M  +      + + + T +    
Sbjct: 321 DEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSK--GVDVNRVIFNTLMDGYC 378

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNAL-DILVKLNDSTHAVQLWDIMVGIGFNLMP 324
           +   +DEAL+   +M+ +  F    F  N +     + N    A +L   M   G  + P
Sbjct: 379 KKGMIDEALRLQNIMQ-QKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERG--VAP 435

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           N++ ++ +I + C   +     R F  M   G  P  +TYN   E   K  ++ E  K  
Sbjct: 436 NVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLI 495

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
           +EM +    P      + I     +   + A+E++N + + G+     +   ++ GL   
Sbjct: 496 NEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVVTYTVIISGLSKD 555

Query: 445 GRLSDVRRFAEEM 457
           GR  +  +  +EM
Sbjct: 556 GRADEAFKLYDEM 568



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 55/260 (21%), Positives = 107/260 (41%), Gaps = 12/260 (4%)

Query: 237 NKTFGEMVERFEWNPEHVLAYET-----FLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           N+ F   +E F++  +     +      FL+ L R   ++  ++FLR M        +  
Sbjct: 135 NRMFDSSLEVFDYARKKGFEIDERSCFEFLLALKRSGNMELCVEFLRQMVDSGIEIRVCS 194

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           ++  +D L K  +   A  L D +V  GF   P++I YN ++       DV  V      
Sbjct: 195 WTAVVDGLCKKGEVVRAKALMDELVCKGFK--PSVITYNTLLNGYIEIKDVGGVNEILSL 252

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M  +    +  TY M+ E   ++ ++ E EK F EM+K   +P      + I        
Sbjct: 253 MEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGN 312

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK 471
            + A  +++ + E  ++P   +   L+ G    G +        +M ++ + +  V  + 
Sbjct: 313 MKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNT 372

Query: 472 L-----KKAFYNESRSMRDI 486
           L     KK   +E+  +++I
Sbjct: 373 LMDGYCKKGMIDEALRLQNI 392



 Score = 42.7 bits (99), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 28/127 (22%), Positives = 62/127 (48%), Gaps = 3/127 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G+  S   +N  ++   K G+ E+ +  +  M+E G++    T+ S+ D    +G  D 
Sbjct: 466 KGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDR 525

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILL 224
           A+  F+ M   G+ ++VV    ++S + + + +   A +  + + K+ + PD   ++ L+
Sbjct: 526 ALELFNEMPQLGLNRNVVTYTVIISGLSK-DGRADEAFKLYDEMNKEGIVPDDGIYSSLI 584

Query: 225 EGWEKEG 231
               K G
Sbjct: 585 ASLHKVG 591


>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
          Length = 716

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 139/310 (44%), Gaps = 24/310 (7%)

Query: 92  YDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPT 149
           Y     A D F   A +GQ    +++ +M++     G    M +   +M  DG+   + T
Sbjct: 341 YGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYT 400

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F+ +  +Y   G  D+A++ F+ M  HGV+ DVV   ++++A+CR         +F   +
Sbjct: 401 FSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMI 460

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
            + V PD  ++  L++G+   G++ +A +   E++        + +  +    + I    
Sbjct: 461 DQGVAPDKYAYHCLIQGFCTHGSLLKAKELILEIM-------NNGMRLDIVFFSSI---- 509

Query: 270 VDEALKFLRVMKGENCF---------PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF 320
           ++   K  R+M  +N F         P    +S  +D    +     A++++D MV  G 
Sbjct: 510 INNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGI 569

Query: 321 NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEV 380
              PN+++Y  ++   C    +D     F +M+  G  P ++ YN+I + L    R    
Sbjct: 570 E--PNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFVAGRTVPA 627

Query: 381 EKFFHEMIKN 390
           +  FHEM ++
Sbjct: 628 KVKFHEMTES 637



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 156/352 (44%), Gaps = 13/352 (3%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSF 170
           +++++++  L   G+  Q  + +R+M E G +  P    + ++ D +   G  ++A   F
Sbjct: 187 FSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYTTVIDCFFKEGDVNKACDLF 246

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEK 229
             M   G+  D+V  +S++ A+C+      +A  FL + V K V PD  ++  L+ G+  
Sbjct: 247 KEMVQRGIPPDLVTYSSVVHALCKAR-AMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSS 305

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL--RVMKGENCFP 287
            G  +EA + F EM  R    P+ V+     + +L +  ++ EA        MKG+N  P
Sbjct: 306 TGQWKEAVRVFKEM-RRHSILPD-VVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQN--P 361

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFR 347
            +  +   L+             L+D+M+G G  + P++  ++ +I    N   +D    
Sbjct: 362 DVFSYKIMLNGYATKGCLVDMTDLFDLMLGDG--IAPDIYTFSVLIKAYANCGMLDKAMI 419

Query: 348 FFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 407
            F++M  HG  PD +TY  +   L +  ++ +  + F++MI     P        I    
Sbjct: 420 IFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFC 479

Query: 408 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
                  A E+   I+ NG+       + ++  L  LGR+ D +   +  +N
Sbjct: 480 THGSLLKAKELILEIMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVN 531



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 88/464 (18%), Positives = 178/464 (38%), Gaps = 45/464 (9%)

Query: 56  ICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSY----DSPSSAVDFFR-WAGRGQR 110
           +C+      +DD+   +A  G + +PD+V     +         + A D F+    RG  
Sbjct: 196 LCDQGKSGQADDLLRMMAEGGAVCSPDVVAYTTVIDCFFKEGDVNKACDLFKEMVQRGIP 255

Query: 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAV 167
                ++ +V  L K     +    +R M   GVL  P   T+ ++   Y   G++ EAV
Sbjct: 256 PDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVL--PDNWTYNNLIYGYSSTGQWKEAV 313

Query: 168 MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW 227
             F  M  H +  DVV +N L+ ++C+          F     K  +PD  S+ I+L G+
Sbjct: 314 RVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGY 373

Query: 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
             +G + +    F  M+   +     +  +   +        +D+A+     M+     P
Sbjct: 374 ATKGCLVDMTDLFDLMLG--DGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKP 431

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMVGIG---------------------------- 319
            +  ++  +  L ++     A++ ++ M+  G                            
Sbjct: 432 DVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELI 491

Query: 320 FNLMPN-----LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN 374
             +M N     ++ ++++I  LC    + +    FD  V  G  PD++ Y+M+ +     
Sbjct: 492 LEIMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLV 551

Query: 375 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 434
            ++ +  + F  M+    +P  +   T +         +  + ++  +L+ GI P     
Sbjct: 552 GKMEKALRVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILY 611

Query: 435 NELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 478
           N ++ GL   GR    +    EM    I I + T + + + F+ 
Sbjct: 612 NIIIDGLFVAGRTVPAKVKFHEMTESGIAINKCTYNIVLRGFFK 655



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 143/365 (39%), Gaps = 40/365 (10%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLN 207
           T+A + D    A + + A+  F  +   G+  D++  N LL   C +  +T  AL+  L+
Sbjct: 117 TYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFC-EAKRTDEALDILLH 175

Query: 208 RVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
           R  ++   PD  S++ILL+    +G   +A+     M E        V+AY T +    +
Sbjct: 176 RTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYTTVIDCFFK 235

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNL 326
              V++A    + M      P L  +S+ +  L K      A      MV  G  ++P+ 
Sbjct: 236 EGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKG--VLPDN 293

Query: 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 386
             YN +I    +        R F +M  H   PD +T NM+   L K  ++ E    F  
Sbjct: 294 WTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDT 353

Query: 387 MIKNEWQPTPLN------------CATAIT-----MLLDADEPEI--------------- 414
           M      P   +            C   +T     ML D   P+I               
Sbjct: 354 MAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGM 413

Query: 415 ---AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK 471
              A+ I+N + ++G+ P   +   ++  L  +G++ D      +M+++ +   +   H 
Sbjct: 414 LDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHC 473

Query: 472 LKKAF 476
           L + F
Sbjct: 474 LIQGF 478



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/324 (22%), Positives = 127/324 (39%), Gaps = 52/324 (16%)

Query: 185 VNSLLSAICRQENQTS------RALEFLNRVK------KIVDPDGDSFAILLEGWEKEGN 232
           +N  L+A+ R  +  +       A+   NR        +++ P   ++AIL++   +   
Sbjct: 71  LNGFLAALARAPSSAACGSGPALAVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHR 130

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-NCFPTLKF 291
            E A   FG+++ R     + ++A    L      K+ DEAL  L     E  C P +  
Sbjct: 131 PELALAFFGQLL-RTGLRVDIIIA-NHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFS 188

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           +S  L  L     S  A  L  +M   G    P+++ Y  VI       DV+     F +
Sbjct: 189 YSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYTTVIDCFFKEGDVNKACDLFKE 248

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           MV  G  PD +TY+ +   L K + + + E F  +M+                       
Sbjct: 249 MVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMV----------------------- 285

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK 471
                         G+LP   + N L+ G  + G+  +  R  +EM    IL   VT++ 
Sbjct: 286 ------------NKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNM 333

Query: 472 LKKAF--YNESRSMRDIFDSLERR 493
           L  +   Y + +  RD+FD++  +
Sbjct: 334 LMGSLCKYGKIKEARDVFDTMAMK 357


>gi|449461475|ref|XP_004148467.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Cucumis sativus]
          Length = 775

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 80/366 (21%), Positives = 160/366 (43%), Gaps = 22/366 (6%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           +G R S Y+ N +++   K   ++  +       E G+ ++ TF ++    C  GK +EA
Sbjct: 327 KGIRSSVYSLNSILEGYLKCQSWQNAFTMFNDALESGLANVFTFNTLLSWLCKEGKMNEA 386

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
              +D +   G+  +VV+ N+++   CR++N  +    +   +     P+  +F IL++G
Sbjct: 387 CNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDG 446

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
           + K+G++E A   F  M +       ++L  +T L  +I+G       K  R  +G + F
Sbjct: 447 YFKKGDIENAFSIFHRMKD------ANILPTDTTLGIIIKG-----LCKAGRSFEGRDLF 495

Query: 287 ---------PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337
                    PT   ++  +D  +K  +   A  ++  M  +G  + P+ + Y ++I   C
Sbjct: 496 NKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVG--ITPSTVTYTSLIDGFC 553

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
             +++D   +  + M   G   D   Y  + +   K + +    +  +E+      P   
Sbjct: 554 KGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRF 613

Query: 398 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
              + IT   + +  E AI+++  ++  GI     +   L+ GL   GRL        EM
Sbjct: 614 IYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEM 673

Query: 458 LNRRIL 463
           L++ IL
Sbjct: 674 LSKGIL 679



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 84/378 (22%), Positives = 155/378 (41%), Gaps = 8/378 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCG 159
           F +   RG  L   A+++ V +L          + +R M+  G +    TF S+  +   
Sbjct: 181 FLQAKARGVELDQEAYSIFVHLLCLKPNSGYALSLLREMRAAGWIPPEGTFTSVITACVK 240

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGD 218
            G   EA+   D M   G   ++    SL+   C Q N  S AL  +N + +  + P+  
Sbjct: 241 EGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRS-ALVLVNEISESGLVPNKV 299

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++++L++G  K GN+E+A + + EM  + +     V +  + L   ++ +    A     
Sbjct: 300 TYSVLIDGCCKNGNIEKAFEFYSEM--KTKGIRSSVYSLNSILEGYLKCQSWQNAFTMFN 357

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
               E+    +  F+  L  L K      A  LWD ++  G +  PN++ YN +I   C 
Sbjct: 358 DAL-ESGLANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGIS--PNVVSYNNIILGHCR 414

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
            D+++   + + +M+ +G  P+++T+ ++ +   K   +      FH M      PT   
Sbjct: 415 KDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTT 474

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
               I  L  A       +++N  +  G +P     N ++ G    G ++       EM 
Sbjct: 475 LGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMC 534

Query: 459 NRRILIYEVTMHKLKKAF 476
              I    VT   L   F
Sbjct: 535 EVGITPSTVTYTSLIDGF 552



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 146/343 (42%), Gaps = 16/343 (4%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF  + D Y   G  + A   F  M     + +++  ++ L  I +   +  R+ E  + 
Sbjct: 439 TFTILMDGYFKKGDIENAFSIFHRMK----DANILPTDTTLGIIIKGLCKAGRSFEGRDL 494

Query: 209 VKKIVD----PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
             K V     P    +  +++G+ KEGN+  A+  + EM E     P  V  Y + +   
Sbjct: 495 FNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCE-VGITPSTV-TYTSLIDGF 552

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
            +G  +D ALK L  MK +     +K +   +D   K  D   A +L + + G G  L P
Sbjct: 553 CKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAG--LSP 610

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           N  +YN++I    N ++V+     + +MV  G   D  TY  + + L+K+ R+       
Sbjct: 611 NRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIH 670

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
            EM+     P        I  L +  + E A +I   +    ++P     N L+ G    
Sbjct: 671 TEMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKE 730

Query: 445 GRLSDVRRFAEEMLNRRI----LIYEVTMHKLKKAFYNESRSM 483
           G L +  R  +EML+R +    + Y++ ++   K   N SR +
Sbjct: 731 GNLQEAFRLHDEMLDRGLVPDNITYDILVNGKFKGDGNFSRDL 773



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/287 (21%), Positives = 115/287 (40%), Gaps = 40/287 (13%)

Query: 229 KEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
           +EGN+ EA + F +   R  E + E   AY  F+  L        AL  LR M+     P
Sbjct: 170 QEGNILEAEQHFLQAKARGVELDQE---AYSIFVHLLCLKPNSGYALSLLREMRAAGWIP 226

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFR 347
               F++ +   VK  +   A++L D MV  G ++  NL +  +++   C   ++ +   
Sbjct: 227 PEGTFTSVITACVKEGNVAEALRLKDDMVNCGKSM--NLAVATSLMKGYCMQGNLRSALV 284

Query: 348 FFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK----------NEWQPTPL 397
             +++   G  P+ +TY+++ +   KN  + +  +F+ EM            N      L
Sbjct: 285 LVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYL 344

Query: 398 NCAT---AITMLLDADEPEIA---------------------IEIWNYILENGILPLEAS 433
            C +   A TM  DA E  +A                       +W+ ++  GI P   S
Sbjct: 345 KCQSWQNAFTMFNDALESGLANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVS 404

Query: 434 ANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 480
            N +++G      ++   +  +EML+       VT   L   ++ + 
Sbjct: 405 YNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKG 451


>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1151

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 149/365 (40%), Gaps = 43/365 (11%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           + Q LSP  + +N ++    K G+ E+  + +  M   G+  ++ T+ +    YC AG+ 
Sbjct: 504 KDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEM 563

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
             A  SF  M   G+  + V    L+   C+  N T    +F   + + V PD  + ++L
Sbjct: 564 QAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVL 623

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           + G  K G ++EA   F E++++                                     
Sbjct: 624 IHGLSKNGKLQEAMGVFSELLDK------------------------------------- 646

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343
              P +  +++ +  L K  D   A +L D M   G N  PN++ YNA+I  LC   ++ 
Sbjct: 647 GLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGIN--PNIVTYNALINGLCKLGEIA 704

Query: 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
                FD +   G   +S+TY+ I     K+  + E  + FH M      P        I
Sbjct: 705 KARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALI 764

Query: 404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
                A   E A+ ++  ++E GI    A  N L+ G   LG+L +  +  E+M++  I 
Sbjct: 765 DGCCKAGNTEKALSLFLGMVEEGIASTPA-FNALIDGFFKLGKLIEAYQLVEDMVDNHIT 823

Query: 464 IYEVT 468
              VT
Sbjct: 824 PNHVT 828



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 76/365 (20%), Positives = 148/365 (40%), Gaps = 9/365 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +++++  L + G  ++     R M   G+L     +A++ D +C   +  E     D M
Sbjct: 269 TYSVVIAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEM 328

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G++ D VA  +L++   +Q +             + +  +  ++  L+ G  K G++
Sbjct: 329 YTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDL 388

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           E+A   F EM       P+ +  Y   +    + + +++A + L  +K EN         
Sbjct: 389 EKAEDLFSEMT-MMGIKPD-IQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCG 446

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             ++ L    D T A +L+  M+  G  L PN+++Y  ++  L      +   +    M 
Sbjct: 447 AIVNGLCHCGDLTRANELFQEMISWG--LKPNIVIYTTIVKGLVKEGRFEEAIKILGVMK 504

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G  PD   YN +     K  ++ E + +  EMI    +P        I     A E +
Sbjct: 505 DQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQ 564

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL----IYEVTM 469
            A   +  +L++GI P +    +L+ G    G  +        ML++ +L     + V +
Sbjct: 565 AAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLI 624

Query: 470 HKLKK 474
           H L K
Sbjct: 625 HGLSK 629



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 81/373 (21%), Positives = 160/373 (42%), Gaps = 18/373 (4%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
           ++++  L KNG+ ++       + + G++  + T+ S+  + C  G    A    D M  
Sbjct: 621 SVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCK 680

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVE 234
            G+  ++V  N+L++ +C+   + ++A E  + + +K +  +  +++ ++ G+ K  N+ 
Sbjct: 681 KGINPNIVTYNALINGLCKL-GEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLT 739

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           EA + F  M  +    P     Y   +    +    ++AL     M  E    T  F  N
Sbjct: 740 EAFQLFHGM--KLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGIASTPAF--N 795

Query: 295 AL-DILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
           AL D   KL     A QL + MV    ++ PN + Y  +I   C   ++    + F +M 
Sbjct: 796 ALIDGFFKLGKLIEAYQLVEDMVD--NHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQ 853

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
                P+ LTY  +     +  R  E+   F EM+    +P  L    A ++++DA   E
Sbjct: 854 KRNVMPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVARGIKPDDL----AWSVMVDAHLKE 909

Query: 414 ----IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTM 469
                A+++ + +L  G+   +     L+  L     LS+V +  +E+  +   +   T 
Sbjct: 910 GNWIKALKLVDDMLSEGVNVCKNLYTILIDALCKHNNLSEVLKVLDEVEKQGSKLSLATC 969

Query: 470 HKLKKAFYNESRS 482
             L   F+   R+
Sbjct: 970 GTLVCCFHRAGRT 982



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 77/377 (20%), Positives = 153/377 (40%), Gaps = 22/377 (5%)

Query: 125 KNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVA 184
           K  R E  W   + M    V  + T+ ++ ++YC  GK +E       M   G   ++V 
Sbjct: 210 KGNRVELFWKVYKGMLGAIVPDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVT 269

Query: 185 VNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
            + +++ +CR       ALE    +  K + PD   +A L++G+ ++    E      EM
Sbjct: 270 YSVVIAGLCRA-GDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEM 328

Query: 244 VERFEWNPEHVLAYETFLITLIRGKQVDEALK-----FLRVMKGENCFPTLKFFSNALDI 298
                  P+HV AY   +   ++   +  A +     F R +K      T  +++  +  
Sbjct: 329 Y-TMGLKPDHV-AYTALINGFVKQSDIGGAFQVKEEMFARKIK----LNTFTYYA-LIHG 381

Query: 299 LVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAF 358
           L K+ D   A  L+  M  +G  + P++  YN +I       +++  +    ++      
Sbjct: 382 LCKIGDLEKAEDLFSEMTMMG--IKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLT 439

Query: 359 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 418
            ++     I   L     +    + F EMI    +P  +   T +  L+     E AI+I
Sbjct: 440 ANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKI 499

Query: 419 WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR----RILIYEVTMHKLKK 474
              + + G+ P     N +++G    G++ + + +  EM+ +     +  Y   +H   +
Sbjct: 500 LGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCR 559

Query: 475 AFYNES--RSMRDIFDS 489
           A   ++  RS  ++ DS
Sbjct: 560 AGEMQAAERSFIEMLDS 576



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 52/239 (21%), Positives = 90/239 (37%), Gaps = 7/239 (2%)

Query: 220 FAILLEGWEKEGNVEEANKTF-GEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           F IL++ + K+G + EA   F G     F      +    +    L++G +V+   K  +
Sbjct: 166 FEILIDIYRKKGFLNEAVSVFLGAKTNEFIVG---LACCNSLSKDLLKGNRVELFWKVYK 222

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            M G    P +  ++N ++   ++        +   M   G   +PNL+ Y+ VI  LC 
Sbjct: 223 GMLGA-IVPDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKG--CIPNLVTYSVVIAGLCR 279

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
             DVD        M   G  PD+  Y  + +   + KR  E +    EM     +P  + 
Sbjct: 280 AGDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVA 339

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
               I   +   +   A ++   +    I     +   L+ GL  +G L        EM
Sbjct: 340 YTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEM 398


>gi|115444031|ref|NP_001045795.1| Os02g0132100 [Oryza sativa Japonica Group]
 gi|41052573|dbj|BAD07755.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113535326|dbj|BAF07709.1| Os02g0132100 [Oryza sativa Japonica Group]
 gi|125537962|gb|EAY84357.1| hypothetical protein OsI_05732 [Oryza sativa Indica Group]
 gi|125580699|gb|EAZ21630.1| hypothetical protein OsJ_05259 [Oryza sativa Japonica Group]
          Length = 871

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 141/308 (45%), Gaps = 18/308 (5%)

Query: 135 AVRVMKEDGVL-SLPTFA-----SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSL 188
           A R M   GVL S+PT       ++   +C  G+ DEA    + M   G+  +VV  N+ 
Sbjct: 194 AGRSMDALGVLDSMPTMNLVVCNTVVAGFCREGQVDEAERLVERMRDEGLAPNVVTFNAR 253

Query: 189 LSAICRQENQTSRALEFLNRVKK-----IVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
           +SA+C+   +   A    N +++     +  PD  +F ++L G+ + G V+EA      M
Sbjct: 254 ISALCKA-GRVLDAYRIFNDMQEKWERGLPRPDQVTFDVMLSGFCEAGMVDEARVLVDIM 312

Query: 244 VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303
             R       V +Y  +L  L+R   V EA + LR M  E   P    ++  +D L K  
Sbjct: 313 --RCGGFLRRVESYNRWLSGLVRNGMVGEAQELLREMAHEGVQPNSYTYNIIVDGLCKEG 370

Query: 304 DSTHAVQLWD-IMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSL 362
            +    ++ D +  G+   + P+++ Y +++   C+  +     R  D+M   G  P+S 
Sbjct: 371 KAFDVRKVEDFVKSGV---MTPDVVTYTSLLHAYCSEGNAAAANRILDEMAQKGCAPNSF 427

Query: 363 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 422
           TYN++ + L K  R+ E E+    M +  +     +C   I  L   ++ ++A++I + +
Sbjct: 428 TYNVLLQSLWKAGRITEAERLLERMSEKGYSLDTASCNIIIDGLCRNNKLDMAMDIVDGM 487

Query: 423 LENGILPL 430
              G L L
Sbjct: 488 WNEGSLAL 495



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 96/401 (23%), Positives = 158/401 (39%), Gaps = 36/401 (8%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-----TFASIFDSYCG 159
           R + L+P    +N  +  L K GR    +     M+E     LP     TF  +   +C 
Sbjct: 239 RDEGLAPNVVTFNARISALCKAGRVLDAYRIFNDMQEKWERGLPRPDQVTFDVMLSGFCE 298

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGD 218
           AG  DEA +  D+M   G  + V + N  LS + R       A E L  +  + V P+  
Sbjct: 299 AGMVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRN-GMVGEAQELLREMAHEGVQPNSY 357

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++ I+++G  KEG   +  K   + V+     P+ V+ Y + L           A + L 
Sbjct: 358 TYNIIVDGLCKEGKAFDVRKV-EDFVKSGVMTPD-VVTYTSLLHAYCSEGNAAAANRILD 415

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            M  + C P    ++  L  L K    T A +L + M   G++L  +    N +I  LC 
Sbjct: 416 EMAQKGCAPNSFTYNVLLQSLWKAGRITEAERLLERMSEKGYSL--DTASCNIIIDGLCR 473

Query: 339 NDDVDNVFRFFDQMVFHGAF-----------------------PDSLTYNMIFECLIKNK 375
           N+ +D      D M   G+                        PD +TY+ +   L K  
Sbjct: 474 NNKLDMAMDIVDGMWNEGSLALGRLGYSFLSLLTDSSSSKRCLPDRITYSTLVSALCKEG 533

Query: 376 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 435
           R  E +K   EMI  +  P  +   T I       +  +A+++   + + G  P   + N
Sbjct: 534 RFDEAKKKLLEMIGKDISPDSVLYDTFIHGYCKHGKTSLAVKVLRDMEKKGCKPSTRTYN 593

Query: 436 ELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
            L+ G R      ++ +   EM  + I    +T + L K+F
Sbjct: 594 LLIWGFREKHNSDEILKLISEMKGKGICPNVMTYNSLIKSF 634



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 74/350 (21%), Positives = 130/350 (37%), Gaps = 100/350 (28%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS--LPTFASIFDSYCG--- 159
           A  G + + Y +N++VD L K G+   +      +K  GV++  + T+ S+  +YC    
Sbjct: 348 AHEGVQPNSYTYNIIVDGLCKEGKAFDVRKVEDFVKS-GVMTPDVVTYTSLLHAYCSEGN 406

Query: 160 --------------------------------AGKYDEAVMSFDVMSMHGVEQDVVAVNS 187
                                           AG+  EA    + MS  G   D  + N 
Sbjct: 407 AAAANRILDEMAQKGCAPNSFTYNVLLQSLWKAGRITEAERLLERMSEKGYSLDTASCNI 466

Query: 188 LLSAICRQE-------------NQTSRALEFLN----------RVKKIVDPDGDSFAILL 224
           ++  +CR               N+ S AL  L              K   PD  +++ L+
Sbjct: 467 IIDGLCRNNKLDMAMDIVDGMWNEGSLALGRLGYSFLSLLTDSSSSKRCLPDRITYSTLV 526

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
               KEG  +EA K   EM+ + + +P+ VL Y+TF+    +  +   A+K LR M+ + 
Sbjct: 527 SALCKEGRFDEAKKKLLEMIGK-DISPDSVL-YDTFIHGYCKHGKTSLAVKVLRDMEKKG 584

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
           C P+ +               T+ + +W      GF                    + D 
Sbjct: 585 CKPSTR---------------TYNLLIW------GFR----------------EKHNSDE 607

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
           + +   +M   G  P+ +TYN + +   +   V++      EM++NE  P
Sbjct: 608 ILKLISEMKGKGICPNVMTYNSLIKSFCERGMVNKAMPLLDEMLQNEIVP 657


>gi|357111163|ref|XP_003557384.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Brachypodium distachyon]
          Length = 821

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 143/318 (44%), Gaps = 16/318 (5%)

Query: 81  PDLV-HEVLQLSYDSPSS---AVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWN 134
           PDLV H ++  ++ + S    A+ +F    +G  ++P  +  N+++  L K+G++ +   
Sbjct: 258 PDLVTHNIVLSAFKNGSQYSKAIAYFEMM-KGANIAPDTFTLNIVIHCLVKDGQYGEAIE 316

Query: 135 AVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
            +  M+E      P   T+ SI  SY   GK ++    FD+M   GV+ ++V+ N+LL A
Sbjct: 317 LLNSMREKRTQCPPDVVTYTSIMHSYYVCGKVEDCKAVFDMMVAEGVKPNIVSYNALLGA 376

Query: 192 ICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
              +    + AL     +K+  + PD  S+  LL  + + G  E+A + F EM  R    
Sbjct: 377 YASR-GMHADALGIFKLLKQNGLRPDVVSYTTLLNAYGRSGQPEKAREAFKEM--RKNSC 433

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
             ++++Y   +          EA+  L  M+ +   P +   S  L    +    T    
Sbjct: 434 RPNIVSYNALIDAYGSAGMFKEAISLLHEMEKDGIPPDVVSISTLLTACGRCRQITKIDT 493

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
           + +     G  L  N++ YN+ IG   N  D       +  M+     PD++TYN++   
Sbjct: 494 ILEAAKSRGIKL--NIVCYNSGIGSYLNFGDYGKALELYAVMMASNVNPDAVTYNILISG 551

Query: 371 LIKNKRVHEVEKFFHEMI 388
           L K  +  E  KFF +M+
Sbjct: 552 LCKVGKYAESLKFFEDMV 569



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 77/363 (21%), Positives = 154/363 (42%), Gaps = 54/363 (14%)

Query: 110 RLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP----TFASIFDSYCGAGKY 163
           R  P A  +N ++    + G++   W A+ +M +    ++P    T+ ++ ++   AG +
Sbjct: 185 RCKPDADIYNSLIHAHARAGQWR--W-AINIMDDMLRAAIPPSRTTYNNVINACGAAGNW 241

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAI 222
            +A+     M+ +GV  D+V  N +LSA  +  +Q S+A+ +   +K   + PD  +  I
Sbjct: 242 KKALELCKKMTRNGVGPDLVTHNIVLSAF-KNGSQYSKAIAYFEMMKGANIAPDTFTLNI 300

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           ++    K+G   EA +    M E+    P  V+ Y + + +            +    K 
Sbjct: 301 VIHCLVKDGQYGEAIELLNSMREKRTQCPPDVVTYTSIMHS------------YYVCGKV 348

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN---N 339
           E+C                         ++D+MV  G    PN++ YNA++G   +   +
Sbjct: 349 EDC-----------------------KAVFDMMVAEGVK--PNIVSYNALLGAYASRGMH 383

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
            D   +F+   Q   +G  PD ++Y  +     ++ +  +  + F EM KN  +P  ++ 
Sbjct: 384 ADALGIFKLLKQ---NGLRPDVVSYTTLLNAYGRSGQPEKAREAFKEMRKNSCRPNIVSY 440

Query: 400 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
              I     A   + AI + + + ++GI P   S + LL       +++ +    E   +
Sbjct: 441 NALIDAYGSAGMFKEAISLLHEMEKDGIPPDVVSISTLLTACGRCRQITKIDTILEAAKS 500

Query: 460 RRI 462
           R I
Sbjct: 501 RGI 503



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 72/357 (20%), Positives = 141/357 (39%), Gaps = 9/357 (2%)

Query: 104 WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMK--EDGVLSLPTFASIFDSYCGAG 161
           WAGR  R +   + L++  +   G  +   +  R MK  E+       +  +   +    
Sbjct: 113 WAGRFARRN---FPLLIREITFAGSLQHAVHVFRWMKNQENYCARNDIYGMMIRLHARHS 169

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSF 220
           + D+A   F  M     + D    NSL+ A  R   Q   A+  ++  ++  + P   ++
Sbjct: 170 QIDQARGLFFEMQEWRCKPDADIYNSLIHAHARA-GQWRWAINIMDDMLRAAIPPSRTTY 228

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
             ++      GN ++A +   +M  R    P+ ++ +   L     G Q  +A+ +  +M
Sbjct: 229 NNVINACGAAGNWKKALELCKKMT-RNGVGPD-LVTHNIVLSAFKNGSQYSKAIAYFEMM 286

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
           KG N  P     +  +  LVK      A++L + M        P+++ Y +++       
Sbjct: 287 KGANIAPDTFTLNIVIHCLVKDGQYGEAIELLNSMREKRTQCPPDVVTYTSIMHSYYVCG 346

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
            V++    FD MV  G  P+ ++YN +           +    F  + +N  +P  ++  
Sbjct: 347 KVEDCKAVFDMMVAEGVKPNIVSYNALLGAYASRGMHADALGIFKLLKQNGLRPDVVSYT 406

Query: 401 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           T +     + +PE A E +  + +N   P   S N L+    + G   +      EM
Sbjct: 407 TLLNAYGRSGQPEKAREAFKEMRKNSCRPNIVSYNALIDAYGSAGMFKEAISLLHEM 463



 Score = 45.4 bits (106), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 49/238 (20%), Positives = 94/238 (39%), Gaps = 40/238 (16%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV------------------------------ 144
           ++N ++D  G  G F++  + +  M++DG+                              
Sbjct: 439 SYNALIDAYGSAGMFKEAISLLHEMEKDGIPPDVVSISTLLTACGRCRQITKIDTILEAA 498

Query: 145 ------LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198
                 L++  + S   SY   G Y +A+  + VM    V  D V  N L+S +C+   +
Sbjct: 499 KSRGIKLNIVCYNSGIGSYLNFGDYGKALELYAVMMASNVNPDAVTYNILISGLCKV-GK 557

Query: 199 TSRALEFLNRVKKIVDP-DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
            + +L+F   +  +  P   + ++ L+  + K+G + EA  TF  M E     P+ VL Y
Sbjct: 558 YAESLKFFEDMVDLRIPLTKEVYSSLICSYVKQGKLTEAESTFSSMKES-GCLPD-VLTY 615

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
              +           A    + M+G    P     S+ ++ L + +     +QL ++M
Sbjct: 616 TAMIEAYNDDGSWRNAWDLFKEMEGNTVQPDAIICSSLMEALNRGSQHERVLQLMELM 673


>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 882

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/359 (21%), Positives = 152/359 (42%), Gaps = 6/359 (1%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK 162
           R   RG   S  ++N ++  LGK  + ++  +   VMK+D   +  T+  I D  C  G+
Sbjct: 344 RLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNSSTYNIIIDMLCLGGR 403

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
            +EA    D M    +  +++ VN ++  +C+          F +  ++  +PD  ++  
Sbjct: 404 VEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCS 463

Query: 223 LLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           L++G  K+G V+EA + F +M++     NP   + Y + +       + ++  K  + + 
Sbjct: 464 LIDGLGKKGQVDEAYRLFEKMLDAGHNANP---VVYTSLIRNFFIHGRKEDGHKIFKELI 520

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
              C P L   +  +D + K  +      +++ +   GF  +P++  Y+ +I  L     
Sbjct: 521 RRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGF--LPDVRSYSILIHGLTKAGQ 578

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
                  F  M   G   D+  YN + +   K+ +VH+  +   EM +   QPT      
Sbjct: 579 ARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGA 638

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
            +  L   D  + A  ++      GI       + L+ G   +GR+ +     EEM+ +
Sbjct: 639 IVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKK 697



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/367 (19%), Positives = 157/367 (42%), Gaps = 7/367 (1%)

Query: 119 MVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT-FASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           ++D LGK G+ ++ +     M + G  + P  + S+  ++   G+ ++    F  +   G
Sbjct: 464 LIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRG 523

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
            + D+  +N+ +  + +        + F +       PD  S++IL+ G  K G   E +
Sbjct: 524 CKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETS 583

Query: 238 KTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
             F  M ++ F  +     AY   +    +  +V +A + L  MK +   PT+  +   +
Sbjct: 584 NIFHAMKQQGFALDAR---AYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIV 640

Query: 297 DILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG 356
           D L K++    A  L++     G  L  N+++Y+++I        +D  +   ++M+  G
Sbjct: 641 DGLAKIDRLDEAYMLFEEAKSKGIEL--NVVLYSSLIDGFGKVGRIDEAYLILEEMMKKG 698

Query: 357 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 416
             P+  T+N + + L+K + ++E    F  M + +  P     +  I  L    +   A 
Sbjct: 699 LTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAF 758

Query: 417 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
             W  + + G++P   +   ++ GL  +G ++D     E       +    + + L +  
Sbjct: 759 VFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGM 818

Query: 477 YNESRSM 483
            N +R+M
Sbjct: 819 SNANRAM 825



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 100/426 (23%), Positives = 174/426 (40%), Gaps = 55/426 (12%)

Query: 79  PTP-DLVHEVLQ-LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAV 136
           P P D  H VL  L +D  +        A  G  L   A   +   L +  R +    AV
Sbjct: 108 PLPADAYHAVLPFLHHDLAALEKVLEEMAVLGYGLPNQACAHLAAALVRARRLDDAVLAV 167

Query: 137 RVMKEDGVLSLPTFAS---IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC 193
            VM+   +   P F++   +  +   A + + A+     M   G E  V    +L+ A+ 
Sbjct: 168 AVMRR--LKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALA 225

Query: 194 RQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTF------------ 240
           R E Q + AL  ++ VK   ++PD   + + ++ + K GNV+ A K F            
Sbjct: 226 R-EGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDD 284

Query: 241 ----------------GEMVERF-----EWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
                           GE  E F     E +     AY T ++      + ++A K L  
Sbjct: 285 VSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLER 344

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
           ++   C P++  F++ L  L K      A+ L+++M     +  PN   YN +I +LC  
Sbjct: 345 LRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKK---DAEPNSSTYNIIIDMLCLG 401

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
             V+  +R  D+M     FP+ LT N++ + L K +++ E  K F    +    P  +  
Sbjct: 402 GRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTY 461

Query: 400 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG--LRNL---GRLSDVRRFA 454
            + I  L    + + A  ++  +L+ G      +AN ++    +RN    GR  D  +  
Sbjct: 462 CSLIDGLGKKGQVDEAYRLFEKMLDAG-----HNANPVVYTSLIRNFFIHGRKEDGHKIF 516

Query: 455 EEMLNR 460
           +E++ R
Sbjct: 517 KELIRR 522


>gi|356523285|ref|XP_003530271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Glycine max]
          Length = 703

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 87/383 (22%), Positives = 162/383 (42%), Gaps = 41/383 (10%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL--SLPTFASIFDSYCGAGKYDEAVMSFDV 172
            +N +V+   K  R  +       MK+ G    +L T++ + D YC +G+  E +   + 
Sbjct: 151 TYNTLVNGFCKAKRLAEARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEE 210

Query: 173 MSMHGVEQDVVAVNSLLSAICRQEN-QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
           M   G++ DV   +SL+SA C + + +T R L F   +++ V P+  +++ L++G  + G
Sbjct: 211 MEREGLKADVFVYSSLISAFCGEGDIETGREL-FDEMLRRKVSPNVVTYSCLMQGLGRTG 269

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM--KGE------ 283
              EA++   +M  R    P+ V+AY      L +  +  +A+K L +M  KGE      
Sbjct: 270 RWREASEMLKDMTAR-GVRPD-VVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLT 327

Query: 284 ---------------NCF------------PTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
                          + F            P    ++  L  L        A+ LW +++
Sbjct: 328 YNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLL 387

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
              F++ P++   N +I  LC    V +  R    MV  G   + +TYN + E  +  ++
Sbjct: 388 SEKFHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARK 447

Query: 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 436
           + E  K +   +++ + P  +  +  I  L       +A  ++  + ++GI P     N 
Sbjct: 448 LIEALKLWKYAVESGFSPNSMTYSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNA 507

Query: 437 LLVGLRNLGRLSDVRRFAEEMLN 459
           L+  L     L   R   +EM N
Sbjct: 508 LMTSLCREDSLEQARSLFQEMRN 530



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 83/368 (22%), Positives = 154/368 (41%), Gaps = 17/368 (4%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM----KEDGVLSLPTFASIFDSYCGA 160
             RG R    A+ ++ D L KNGR       + +M    +E G L   T+  + +  C  
Sbjct: 282 TARGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTL---TYNVVVNGLCKE 338

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE---FLNRVKKIVDPDG 217
            + D+A    ++M   G + D V  N+LL  +C    +   A++    L   K  V PD 
Sbjct: 339 DRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLC-GAGKIHEAMDLWKLLLSEKFHVKPDV 397

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKF 276
            +   L++G  KEG V +A +    MVE   + N   ++ Y   +   +  +++ EALK 
Sbjct: 398 FTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGN---IVTYNFLIEGYLAARKLIEALKL 454

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLL 336
            +        P    +S  ++ L K+   + A  L+  M   G    P +I YNA++  L
Sbjct: 455 WKYAVESGFSPNSMTYSVMINGLCKMQMLSVARGLFCKMKDSGIR--PTVIDYNALMTSL 512

Query: 337 CNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 396
           C  D ++     F +M       D +++N+I +  +K   V   ++   EM   +  P  
Sbjct: 513 CREDSLEQARSLFQEMRNVNHNVDVVSFNIIIDGTLKAGDVKSAKELLSEMFMMDLVPDA 572

Query: 397 LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 456
           +  +  I         + A+ ++  ++  G +P     + LL G    G    +     +
Sbjct: 573 VTFSILINRFSKLGMLDEAMGLYEKMVSCGHVPGVVVFDSLLKGYGLKGETEKIISLLHQ 632

Query: 457 MLNRRILI 464
           M ++ +++
Sbjct: 633 MADKDVVL 640



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/261 (21%), Positives = 110/261 (42%), Gaps = 3/261 (1%)

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM- 280
           ++L+G+ + G  ++A   F +M   ++      + Y T +    + K++ EA      M 
Sbjct: 117 LVLKGFCRSGQCDKAMSLFSQMKRNYDCVVPDCVTYNTLVNGFCKAKRLAEARVLFEAMK 176

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
           KG +C P L  +S  +D   K  +    + L + M   G  L  ++ +Y+++I   C   
Sbjct: 177 KGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREG--LKADVFVYSSLISAFCGEG 234

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
           D++     FD+M+     P+ +TY+ + + L +  R  E  +   +M     +P  +   
Sbjct: 235 DIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPDVVAYT 294

Query: 401 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
                L        AI++ + +++ G  P   + N ++ GL    R+ D     E M+ +
Sbjct: 295 VLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKK 354

Query: 461 RILIYEVTMHKLKKAFYNESR 481
                 VT + L K      +
Sbjct: 355 GKKPDAVTYNTLLKGLCGAGK 375



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 64/311 (20%), Positives = 126/311 (40%), Gaps = 17/311 (5%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDV 172
           +  N ++  L K GR          M E G+   + T+  + + Y  A K  EA+  +  
Sbjct: 398 FTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALKLWKY 457

Query: 173 MSMHGVEQDVVAVNSLLSAICR-QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
               G   + +  + +++ +C+ Q    +R L F       + P    +  L+    +E 
Sbjct: 458 AVESGFSPNSMTYSVMINGLCKMQMLSVARGL-FCKMKDSGIRPTVIDYNALMTSLCRED 516

Query: 232 NVEEANKTFGEMVERFEWNPEH---VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           ++E+A   F EM      N  H   V+++   +   ++   V  A + L  M   +  P 
Sbjct: 517 SLEQARSLFQEM-----RNVNHNVDVVSFNIIIDGTLKAGDVKSAKELLSEMFMMDLVPD 571

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
              FS  ++   KL     A+ L++ MV  G   +P ++++++++       + + +   
Sbjct: 572 AVTFSILINRFSKLGMLDEAMGLYEKMVSCGH--VPGVVVFDSLLKGYGLKGETEKIISL 629

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF---FHEMIKNEWQPTPLNCATAITM 405
             QM       DS   + I  CL    R  +VEK    F +  ++  + T + C   + M
Sbjct: 630 LHQMADKDVVLDSKLTSTILACLCHMSRNLDVEKILPKFSQQSEHTSKGTTIKCH-ELLM 688

Query: 406 LLDADEPEIAI 416
            L+   PE+ +
Sbjct: 689 RLNNFHPELKL 699


>gi|255661028|gb|ACU25683.1| pentatricopeptide repeat-containing protein [Citharexylum
           montevidense]
          Length = 376

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 80/362 (22%), Positives = 161/362 (44%), Gaps = 16/362 (4%)

Query: 109 QRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
            ++SP A  +N M++   K GR +  ++   +M  +G  ++ +F ++       G+ DE 
Sbjct: 19  SKISPDAVVYNAMLNGFFKAGRIKNCFDLWELMGREGSRNVASFNTMMRGLFNNGEVDEV 78

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQ--ENQTSRALEFLNRVKKIVDPDGDSFAILL 224
              +++M   G  +D      L+   C+    N++   LE   +    +D    +++ ++
Sbjct: 79  FSIWELMKESGFVEDSTTYGILVHGFCKNGYNNKSLHVLEIAKQEGGALDAF--AYSAMI 136

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G  K G +++A      M+E       +   Y   +  L+   + ++A++  + +   +
Sbjct: 137 SGLCKMGKLDKAVSVLNGMIE--SGCKPNTQVYNALINGLLGASKFEDAIRVFKELGTRH 194

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
           C PT+  ++  ++ L K      A  L   M+  G+N  P++I Y+ +I  LC +  V+ 
Sbjct: 195 CSPTIVTYNTLINGLCKGERFAEAYDLVKEMLEKGWN--PSVITYSLLIKGLCQDHKVEM 252

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
             + ++Q++  G  PD   +N++   L    +     + + +M  N W   P N  T  T
Sbjct: 253 ALQLWNQVISKGFKPDVQMHNILIHGLCSVGKTEHASELYFDM--NHWNCAP-NLVTYNT 309

Query: 405 ML---LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461
           ++       +   A+ IW  IL NG+LP   S N  L GL    R+S    F  + + + 
Sbjct: 310 LMEGFYKGGDTRNALVIWARILRNGLLPDIISYNITLKGLCACNRISVAILFLNDAVTKN 369

Query: 462 IL 463
           I+
Sbjct: 370 IV 371



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/320 (21%), Positives = 128/320 (40%), Gaps = 5/320 (1%)

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG 217
           C +G  + A   +  M+   +  D V  N++L+   +   +     +    + +    + 
Sbjct: 1   CESGAINAAERVYKEMAESKISPDAVVYNAMLNGFFKA-GRIKNCFDLWELMGREGSRNV 59

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            SF  ++ G    G V+E    +  M E      E    Y   +    +    +++L  L
Sbjct: 60  ASFNTMMRGLFNNGEVDEVFSIWELMKE--SGFVEDSTTYGILVHGFCKNGYNNKSLHVL 117

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337
            + K E        +S  +  L K+     AV + + M+  G    PN  +YNA+I  L 
Sbjct: 118 EIAKQEGGALDAFAYSAMISGLCKMGKLDKAVSVLNGMIESG--CKPNTQVYNALINGLL 175

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
                ++  R F ++      P  +TYN +   L K +R  E      EM++  W P+ +
Sbjct: 176 GASKFEDAIRVFKELGTRHCSPTIVTYNTLINGLCKGERFAEAYDLVKEMLEKGWNPSVI 235

Query: 398 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
             +  I  L    + E+A+++WN ++  G  P     N L+ GL ++G+         +M
Sbjct: 236 TYSLLIKGLCQDHKVEMALQLWNQVISKGFKPDVQMHNILIHGLCSVGKTEHASELYFDM 295

Query: 458 LNRRILIYEVTMHKLKKAFY 477
            +       VT + L + FY
Sbjct: 296 NHWNCAPNLVTYNTLMEGFY 315


>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 98/436 (22%), Positives = 183/436 (41%), Gaps = 20/436 (4%)

Query: 51  SSARIIC-----EILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA 105
           S+AR+ C     + LA AS +  E+      +       HE+  L       A+D F   
Sbjct: 17  SAARLFCTRSIRDTLAKASGESCEAGFGGESLKLQSGF-HEIKGLE-----DAIDLFSDM 70

Query: 106 GRGQRL-SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKY 163
            R + L S   +  ++ V+ +  R + + +  + M+   +   + +F  +   +C   K 
Sbjct: 71  LRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKL 130

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAI 222
             A+ +F  ++  G+  DVV  N+LL  +C  E++ S AL   +++ +    P+  +F  
Sbjct: 131 PFALSTFGKLTKLGLHPDVVTFNTLLHGLC-VEDRVSEALNLFHQMFETTCRPNVVTFTT 189

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+ G  +EG + EA      M+E     P  +  Y T +  + +      AL  LR M+ 
Sbjct: 190 LMNGLCREGRIVEAVALLDRMMED-GLQPTQI-TYGTIVDGMCKKGDTVSALNLLRKMEE 247

Query: 283 -ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
             +  P +  +S  +D L K    + A  L+  M   G  + P+L  YN++I   C++  
Sbjct: 248 VSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKG--IFPDLFTYNSMIVGFCSSGR 305

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
             +  +   +M+     PD +TYN +    +K  +  E E+ + EM+     P  +  ++
Sbjct: 306 WSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSS 365

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461
            I      +  + A  ++  +   G  P   + N L+ G     R+ D      EM    
Sbjct: 366 MIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETG 425

Query: 462 ILIYEVTMHKLKKAFY 477
           ++    T + L   FY
Sbjct: 426 LVADTTTYNTLIHGFY 441



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/387 (19%), Positives = 160/387 (41%), Gaps = 20/387 (5%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +N M+     +GR+      ++ M E  +   + T+ ++ +++   GK+ EA   +D 
Sbjct: 291 FTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDE 350

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M   G+  + +  +S++   C+Q    +    F     K   P+  +F  L++G+     
Sbjct: 351 MLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKR 410

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG----KQVDEALKFLRVMKGENCFPT 288
           +++  +   EM E        ++A  T   TLI G      ++ AL  L+ M      P 
Sbjct: 411 IDDGMELLHEMTET------GLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPD 464

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIM--------VGIGFN-LMPNLIMYNAVIGLLCNN 339
           +      LD L        A++++ +M            FN + P++  YN +I  L N 
Sbjct: 465 IVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINE 524

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
                    +++M   G  PD++TY+ + + L K  R+ E  + F  M    + P  +  
Sbjct: 525 GKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTF 584

Query: 400 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
            T I     A   +  +E++  +   GI+    +   L+ G R +G ++      +EM++
Sbjct: 585 TTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMIS 644

Query: 460 RRILIYEVTMHKLKKAFYNESRSMRDI 486
             +    +T+  +    +++    R +
Sbjct: 645 SGVYPDTITIRNMLTGLWSKEELKRAV 671



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 119/302 (39%), Gaps = 42/302 (13%)

Query: 182 VVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFG 241
           VV    L+  + R E        +    +K +  D  SF IL++ +     +  A  TFG
Sbjct: 79  VVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFG 138

Query: 242 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
           ++  +   +P+ V+ + T L  L    +V EAL     M    C P +  F+  ++ L +
Sbjct: 139 KLT-KLGLHPD-VVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCR 196

Query: 302 LNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM--VFHGAFP 359
                 AV L D M+  G  L P  I Y  ++  +C   D  +      +M  V H   P
Sbjct: 197 EGRIVEAVALLDRMMEDG--LQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSH-IIP 253

Query: 360 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 419
           + + Y+ I + L K+ R  + +  F EM                                
Sbjct: 254 NVVIYSAIIDSLCKDGRHSDAQNLFTEM-------------------------------- 281

Query: 420 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 479
               E GI P   + N ++VG  + GR SD  +  +EML R+I    VT + L  AF  E
Sbjct: 282 ---QEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKE 338

Query: 480 SR 481
            +
Sbjct: 339 GK 340


>gi|242084770|ref|XP_002442810.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
 gi|241943503|gb|EES16648.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
          Length = 722

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 159/356 (44%), Gaps = 5/356 (1%)

Query: 109 QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAV 167
           ++ S + +N ++  L   G  ++  +    M+ +G++ ++ T+ ++      +G+ + A 
Sbjct: 304 KKASSFTYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQVEAAQ 363

Query: 168 MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW 227
           + F  M   G++ DV+  NSLL+  C+  +     L F +     + P   ++ IL++G+
Sbjct: 364 VKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGY 423

Query: 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
            + G++EEA +   EMVE+    P+ V  Y   +        +  A +F   M  +   P
Sbjct: 424 CRLGDLEEARRLKEEMVEQ-GCLPD-VCTYTILMKGSHNACSLAMAREFFDEMLSKGLQP 481

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFR 347
               ++  +   + L     A +L ++M+  G +   + + YN +I  LC   ++++   
Sbjct: 482 DCFAYNTRIRAELTLGAIAKAFRLREVMMLEGIS--SDTVTYNILIDGLCKTGNLNDAKD 539

Query: 348 FFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 407
              +MV +G  PD +TY  +     +   + E  KFF +MI +   P+ +     I    
Sbjct: 540 LQMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFKDMISDGLAPSAVTYTVFIHAYC 599

Query: 408 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
                  A   +  +LE G+ P E + N L+  L   GR     R   EML R ++
Sbjct: 600 RRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRTGRTQLAYRHFHEMLERGLV 655



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 156/363 (42%), Gaps = 7/363 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N M+  L ++G+ E        M+  G+   + T+ S+ + YC AG   EA++ F  + 
Sbjct: 346 YNAMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLR 405

Query: 175 MHGVEQDVVAVNSLLSAICRQEN-QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
             G+   V+  N L+   CR  + + +R L+    V++   PD  ++ IL++G     ++
Sbjct: 406 HAGLAPTVLTYNILIDGYCRLGDLEEARRLKE-EMVEQGCLPDVCTYTILMKGSHNACSL 464

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
             A + F EM+ +    P+   AY T +   +    + +A +   VM  E        ++
Sbjct: 465 AMAREFFDEMLSK-GLQPD-CFAYNTRIRAELTLGAIAKAFRLREVMMLEGISSDTVTYN 522

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +D L K  +   A  L   MV  G  L P+ I Y  +I   C    +    +FF  M+
Sbjct: 523 ILIDGLCKTGNLNDAKDLQMKMVHNG--LQPDCITYTCLIHAHCERGLLREARKFFKDMI 580

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G  P ++TY +      +   ++    +F +M++   +P  +     I  L      +
Sbjct: 581 SDGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRTGRTQ 640

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 473
           +A   ++ +LE G++P + +   L+ G    G   D  RF  EM    I    +T   L 
Sbjct: 641 LAYRHFHEMLERGLVPNKYTYTLLIDGNCKEGNWEDAMRFYFEMHQNGIHPDYLTHKALF 700

Query: 474 KAF 476
           K F
Sbjct: 701 KGF 703



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 77/366 (21%), Positives = 146/366 (39%), Gaps = 51/366 (13%)

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ--ENQTSRALEFLNRVKKIVDPDG 217
           A ++D+       M   G+E  +V  N+LL +  ++   ++ +  L+ +        P+ 
Sbjct: 215 AARWDDICAVHAEMLQLGIEPSIVTYNTLLDSFLKEGRNDKVAMLLKEMETRGSGCLPND 274

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVE---------RFEWNP----------------- 251
            +  +++ G  ++G++EEA     EMVE          F +NP                 
Sbjct: 275 VTHNVVITGLARKGDLEEA----AEMVEGMRLSKKASSFTYNPLITGLLAKGFVKKADDL 330

Query: 252 ----------EHVLAYETFLITLIRGKQVDEA-LKFLRVMKGENCFPTLKFFSNALDILV 300
                       V+ Y   +  L++  QV+ A +KF+  M+     P +  +++ L+   
Sbjct: 331 QLEMENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKFVE-MRAMGLQPDVITYNSLLNGYC 389

Query: 301 KLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPD 360
           K      A+ L+  +   G  L P ++ YN +I   C   D++   R  ++MV  G  PD
Sbjct: 390 KAGSLKEALLLFGDLRHAG--LAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPD 447

Query: 361 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 420
             TY ++ +       +    +FF EM+    QP      T I   L       A  +  
Sbjct: 448 VCTYTILMKGSHNACSLAMAREFFDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLRE 507

Query: 421 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVTMH-KLKKA 475
            ++  GI     + N L+ GL   G L+D +    +M++  +    + Y   +H   ++ 
Sbjct: 508 VMMLEGISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERG 567

Query: 476 FYNESR 481
              E+R
Sbjct: 568 LLREAR 573



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/221 (22%), Positives = 92/221 (41%), Gaps = 4/221 (1%)

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSF 220
           G   +A    +VM + G+  D V  N L+  +C+  N        +  V   + PD  ++
Sbjct: 497 GAIAKAFRLREVMMLEGISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITY 556

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
             L+    + G + EA K F +M+   +      + Y  F+    R   +  A  + R M
Sbjct: 557 TCLIHAHCERGLLREARKFFKDMIS--DGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKM 614

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
             E   P    ++  +  L +   +  A + +  M+  G  L+PN   Y  +I   C   
Sbjct: 615 LEEGVEPNEITYNVLIHALCRTGRTQLAYRHFHEMLERG--LVPNKYTYTLLIDGNCKEG 672

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 381
           + ++  RF+ +M  +G  PD LT+  +F+   +    H +E
Sbjct: 673 NWEDAMRFYFEMHQNGIHPDYLTHKALFKGFDEGHMNHAIE 713



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 128/322 (39%), Gaps = 21/322 (6%)

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
           +F  M+ HGV  DV   N +L  +                ++  ++P   ++  LL+ + 
Sbjct: 189 AFHEMASHGVAPDVKDCNRVLRVLSDAARWDDICAVHAEMLQLGIEPSIVTYNTLLDSFL 248

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF---LRVMKGENC 285
           KEG  ++      EM  R      + + +   +  L R   ++EA +    +R+ K  + 
Sbjct: 249 KEGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEEAAEMVEGMRLSKKASS 308

Query: 286 FPTLKFFSNAL-DILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
           F      +  L    VK  D    +QL     GI    MP ++ YNA+I  L  +  V+ 
Sbjct: 309 FTYNPLITGLLAKGFVKKADD---LQLEMENEGI----MPTVVTYNAMIHGLLQSGQVEA 361

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
               F +M   G  PD +TYN +     K   + E    F ++      PT L     I 
Sbjct: 362 AQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILID 421

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI-- 462
                 + E A  +   ++E G LP   +   L+ G  N   L+  R F +EML++ +  
Sbjct: 422 GYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMAREFFDEMLSKGLQP 481

Query: 463 --------LIYEVTMHKLKKAF 476
                   +  E+T+  + KAF
Sbjct: 482 DCFAYNTRIRAELTLGAIAKAF 503



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 101/241 (41%), Gaps = 7/241 (2%)

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVM--KGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           ++ Y T L + ++  + D+    L+ M  +G  C P     +  +  L +  D   A ++
Sbjct: 237 IVTYNTLLDSFLKEGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEEAAEM 296

Query: 312 WDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECL 371
            +   G+  +   +   YN +I  L     V        +M   G  P  +TYN +   L
Sbjct: 297 VE---GMRLSKKASSFTYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGL 353

Query: 372 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 431
           +++ +V   +  F EM     QP  +   + +     A   + A+ ++  +   G+ P  
Sbjct: 354 LQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTV 413

Query: 432 ASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE-SRSM-RDIFDS 489
            + N L+ G   LG L + RR  EEM+ +  L    T   L K  +N  S +M R+ FD 
Sbjct: 414 LTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMAREFFDE 473

Query: 490 L 490
           +
Sbjct: 474 M 474


>gi|147787958|emb|CAN73849.1| hypothetical protein VITISV_021776 [Vitis vinifera]
          Length = 671

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/330 (24%), Positives = 141/330 (42%), Gaps = 25/330 (7%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF ++    C  GK  EA+  FD M   G   DVV   +L++ +C+  N TS A+  L  
Sbjct: 133 TFTTLIRGICVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGN-TSAAIRLLGS 191

Query: 209 -VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            V+K   P+  ++  +++   K+  V EA   F EMV +   +P+ +  Y + +  L   
Sbjct: 192 MVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTK-GISPD-IFTYNSLIHALCNL 249

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
            +       L  M      P +  F+  +D L K    T A  + D M+  G    PN++
Sbjct: 250 CEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVE--PNVV 307

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFE--CLIK--NKRVH----- 378
            Y A++   C   ++D   + FD MV  G  P+ ++YN +    C I+  +K +H     
Sbjct: 308 TYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAIHYTXLM 367

Query: 379 ----------EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 428
                     E  K F  M+     P  ++  T I         + A+ ++  +    ++
Sbjct: 368 DXXCCYLNMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELI 427

Query: 429 PLEASANELLVGLRNLGRLSDVRRFAEEML 458
           P   + + L+ GL ++ RL D      EM+
Sbjct: 428 PDTVTYSTLIHGLCHVERLQDAIALFHEMV 457



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 153/348 (43%), Gaps = 27/348 (7%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++N +VD L K G+  +  + V  M + GV  ++ T+ ++ D +C   + DEAV  FD M
Sbjct: 273 SFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTM 332

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEF------------LNRVKKIVD------- 214
              G   +V++ N+L++  C+ + +  +A+ +            ++   K+ D       
Sbjct: 333 VCKGCMPNVISYNTLINGYCKIQ-RIDKAIHYTXLMDXXCCYLNMDEAVKVFDTMVCKGC 391

Query: 215 -PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
            P+  S+  L+ G+ K   +++A   FGEM  R E  P+ V  Y T +  L   +++ +A
Sbjct: 392 MPNVISYNTLINGYCKIQRIDKAMYLFGEMC-RQELIPDTV-TYSTLIHGLCHVERLQDA 449

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
           +     M   +  P L  +   LD L K      A+ L   + G   NL P++ + N  I
Sbjct: 450 IALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEG--SNLDPDIQVNNIAI 507

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
             +C   +++     F  +   G  PD  TY+++   L +   + E  K F EM +N   
Sbjct: 508 DGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCT 567

Query: 394 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 441
                  T     L  +E   AI++   ++  G    +AS   L V +
Sbjct: 568 LNGCIYNTITRGFLRNNETSRAIQLLQEMVARG-FSADASTMTLFVKM 614



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/323 (22%), Positives = 138/323 (42%), Gaps = 14/323 (4%)

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAI 222
           D A+ SF+ M         V  N LL++I + ++  S  L   +++    + P+  +  I
Sbjct: 43  DGAISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHH-STLLSLSHQMDSFGIPPNIYTLHI 101

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG----KQVDEALKFLR 278
           L+  +     V  A     +++ +    P+      TF  TLIRG     ++ EAL    
Sbjct: 102 LINSFCHLNRVGFAFSVLAKIL-KLGHQPD----TATF-TTLIRGICVEGKIGEALHLFD 155

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            M GE   P +  +   ++ L K+ +++ A++L   MV    N  PN+  YN +I  LC 
Sbjct: 156 KMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQK--NCQPNVFAYNTIIDSLCK 213

Query: 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 398
           +  V   F  F +MV  G  PD  TYN +   L        V    +EM+ ++  P  ++
Sbjct: 214 DRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVS 273

Query: 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
             T +  L    +   A ++ + +++ G+ P   +   L+ G   L  + +  +  + M+
Sbjct: 274 FNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMV 333

Query: 459 NRRILIYEVTMHKLKKAFYNESR 481
            +  +   ++ + L   +    R
Sbjct: 334 CKGCMPNVISYNTLINGYCKIQR 356



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 4/245 (1%)

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P   + +   L ++ + K     L     M      P +      ++    LN    A  
Sbjct: 58  PPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNRVGFAFS 117

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
           +   ++ +G    P+   +  +I  +C    +      FD+M+  G  PD +TY  +   
Sbjct: 118 VLAKILKLGHQ--PDTATFTTLIRGICVEGKIGEALHLFDKMIGEGFRPDVVTYGTLING 175

Query: 371 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 430
           L K        +    M++   QP      T I  L    +   A  +++ ++  GI P 
Sbjct: 176 LCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPD 235

Query: 431 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFD 488
             + N L+  L NL     V     EM++ +I+   V+ + +  A   E +     D+ D
Sbjct: 236 IFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVD 295

Query: 489 SLERR 493
            + +R
Sbjct: 296 KMIQR 300


>gi|357463605|ref|XP_003602084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491132|gb|AES72335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 579

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 135/280 (48%), Gaps = 13/280 (4%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y ++++VD L K+ + +Q  N + +M + GV  ++ T+ +I D YC   + ++A+  F+V
Sbjct: 183 YTFSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNV 242

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK----KIVDPDGDSFAILLEGWE 228
           M   GVE +V   N +++ +C+++    R  E +N  K    K ++PD  ++ IL++G  
Sbjct: 243 MVQEGVEPNVWCYNIIINGLCKKK----RVDEAMNLFKEMHWKKINPDVVTYNILIDGLC 298

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           K G +  + +   EM  R       ++ Y + L  L +   +D+A+  ++ +K +   P 
Sbjct: 299 KLGKISTSLELVDEM--RSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPN 356

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
           +  ++  +D L K      A  ++  ++  G+++   +  YN +I  LC     D     
Sbjct: 357 VCTYTTLIDGLCKDGRLEDAYVIFQEILTEGYHI--TVWTYNVMINGLCKKGLFDEALAL 414

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
             +M  +   PD+++Y  I   L +     +  K    MI
Sbjct: 415 LSRMEDNACIPDAVSYETIIYALSEKGETVKTNKLLCAMI 454



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 153/340 (45%), Gaps = 12/340 (3%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF ++    C  G+  EA++  D +  HG + D V+   L++ +C+   +T  A++ L  
Sbjct: 82  TFTTLIKGMCLNGQAYEALLFHDHVVAHGFKLDQVSYAILMNGLCKM-GETRAAMQMLR- 139

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
            K  V+ D   ++ +++   K   V +A + + EM+ +  +   +V  +   +  L + +
Sbjct: 140 -KTWVNADVVMYSTIIDSLCKGKFVTDAYRLYSEMIAKGIF--PNVYTFSILVDALCKDR 196

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           +  +A+  L +M  +   P +  +   +D    +N    A+ ++++MV  G    PN+  
Sbjct: 197 KGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEGVE--PNVWC 254

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           YN +I  LC    VD     F +M +    PD +TYN++ + L K  ++    +   EM 
Sbjct: 255 YNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKLGKISTSLELVDEMR 314

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
                   +   + +  L      + AI +   I + GI P   +   L+ GL   GRL 
Sbjct: 315 SIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCTYTTLIDGLCKDGRLE 374

Query: 449 DVRRFAEEMLNR----RILIYEVTMHKL-KKAFYNESRSM 483
           D     +E+L       +  Y V ++ L KK  ++E+ ++
Sbjct: 375 DAYVIFQEILTEGYHITVWTYNVMINGLCKKGLFDEALAL 414


>gi|449442339|ref|XP_004138939.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
           mitochondrial-like [Cucumis sativus]
          Length = 559

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 108/456 (23%), Positives = 199/456 (43%), Gaps = 32/456 (7%)

Query: 67  DIESALACTGIIPTPDLVHEVL-QLSYDSPSSAVDFFRWAGRGQRLS--PYAWNLMVDVL 123
           D+E AL   G+  T DLV ++L +L +D    A  FF WA R +  S  P  +N M+D+L
Sbjct: 102 DMEGALDQVGVYLTTDLVADILHRLRFDE-KLAFRFFTWAARQENYSHEPRVYNEMIDIL 160

Query: 124 G----KNGRFEQMWNAVRVMKEDGVLSLPT--FASIFDSYCGAGKYDEAVMSFDVMSMHG 177
                K  +F  + + +  MK +   ++P      I  +Y    KY   +  F       
Sbjct: 161 SSTRYKVKQFRIVCDLLDYMKRNDKNTVPVEVLFGILRNY--TDKYLTCLQKFAKKKKVI 218

Query: 178 VEQ--DVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEE 235
           V++  ++ A N LL A+C+  +    A   L +VKK + PD +++ I+  GW +  N   
Sbjct: 219 VKRQPEINAFNLLLDALCKC-SLVEDAEALLKKVKKKLKPDANTYNIMFFGWCRVRNPGR 277

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA---LKFLRVMKGENCFPTLKFF 292
             +   EM+E   ++P++   Y T + +  +   + EA    +F+R        PT K +
Sbjct: 278 GMRVLEEMIE-LGFDPDN-FTYNTAIASFCKAGMLKEACELFEFMRTKGSALSSPTAKTY 335

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  +  LV         +  + M+  G   +P++  Y  +I  +C    V   + F ++M
Sbjct: 336 AIMIVALVNNGRMEECFKFLEYMIKSG--CLPDVSTYKEMIEGICVAGKVQEAYMFLEEM 393

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
              G  PD +TYN   + L  NK   +  +    MI+    P+       I+M  + ++ 
Sbjct: 394 GKKGYPPDIVTYNCFLKVLCDNKMSDDALRHCDRMIEVGCLPSVQTYNMLISMFFEMNDH 453

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI---------L 463
             A +IW  +   G      S   ++ GL    ++ D     EE++N+ +          
Sbjct: 454 NGAFQIWLEMDRYGCTRDVDSYCIMIEGLFGCNKVGDACLLLEEVVNKGMKLPFRKFDSF 513

Query: 464 IYEVTMHKLKKAFYNESRSMRDIFD-SLERRCKTSQ 498
           + +++++   K  +  S  MR  ++ ++ RR   +Q
Sbjct: 514 LMQLSVNGNLKGIHRLSEHMRKFYNRAMARRFSLNQ 549


>gi|223635627|sp|Q9SZ20.2|PP339_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g26800
          Length = 514

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/358 (22%), Positives = 161/358 (44%), Gaps = 18/358 (5%)

Query: 131 QMWNAV-----RVMKEDGVLSLPTFAS---IFDSYCGAGKYDEAVMSFDVMSMHGVEQDV 182
           QM++ V     R+   +G+   P   +   + + +C   +   A+     M   G+E D+
Sbjct: 99  QMYDVVINLWKRIENAEGIEISPDLYTCNILVNCFCRCFQPSSALSYLGKMMKLGIEPDI 158

Query: 183 VAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFG 241
           V  +SL++  C   N    A+    +++K+ +  D     IL++   K   V  A +   
Sbjct: 159 VTASSLVNGFC-LSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDTLCKNRLVVPALEVLK 217

Query: 242 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
            M +R   +P +V+ Y + +  L +  ++ +A + L  M  +   P +  FS  +D   K
Sbjct: 218 RMKDR-GISP-NVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYAK 275

Query: 302 LNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS 361
               +    ++ +M+ +  +  PN+  Y+++I  LC ++ VD   +  D M+  G  P+ 
Sbjct: 276 RGKLSKVDSVYKMMIQMSID--PNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNV 333

Query: 362 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 421
           +TY+ +     K+ RV +  K   +M +       ++C T I     A + ++A+ ++ Y
Sbjct: 334 VTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGY 393

Query: 422 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR----ILIYEVTMHKLKKA 475
           +  NG++P   S N +L GL   G +       E M   R    I+ Y + +H + KA
Sbjct: 394 MTSNGLIPNIRSYNIVLAGLFANGEVEKALSRFEHMQKTRNDLDIITYTIMIHGMCKA 451



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 63/306 (20%), Positives = 132/306 (43%), Gaps = 43/306 (14%)

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEA 236
           +  D+   N L++  CR   Q S AL +L ++ K+ ++PD  + + L+ G+    ++++A
Sbjct: 119 ISPDLYTCNILVNCFCRCF-QPSSALSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDA 177

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLI-TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
               G+M E+     + V+  +T LI TL + + V  AL+ L+ MK              
Sbjct: 178 VYVAGQM-EKMGIKRDVVV--DTILIDTLCKNRLVVPALEVLKRMKDR------------ 222

Query: 296 LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
                                GI     PN++ Y+++I  LC +  + +  R   +M   
Sbjct: 223 ---------------------GIS----PNVVTYSSLITGLCKSGRLADAERRLHEMDSK 257

Query: 356 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 415
              P+ +T++ + +   K  ++ +V+  +  MI+    P     ++ I  L   +  + A
Sbjct: 258 KINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEA 317

Query: 416 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKA 475
           I++ + ++  G  P   + + L  G     R+ D  +  ++M  R +    V+ + L K 
Sbjct: 318 IKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKG 377

Query: 476 FYNESR 481
           ++   +
Sbjct: 378 YFQAGK 383


>gi|297807667|ref|XP_002871717.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317554|gb|EFH47976.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 533

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 145/352 (41%), Gaps = 18/352 (5%)

Query: 82  DLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE 141
           DLVH + + S +S     + F              NL+V  L K    E  +  +  +  
Sbjct: 170 DLVHAMFKNSKESFGITPNIF------------TCNLLVKALCKKNDIESAYKVLDEIPA 217

Query: 142 DGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS 200
            G++ +L T+ +I   Y   G  + A    + M   G   D +    L+   C+    + 
Sbjct: 218 MGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDAITYTVLMDGYCKLGRFSE 277

Query: 201 RALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF 260
            A    +  K  ++P+  ++ +++    KE    EA   F EM++R  + P+  L  +  
Sbjct: 278 AATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLDR-SFMPDSSLCCKV- 335

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF 320
           +  L    +VDEA    R M   NC P     S  +  L K    + A +L+D       
Sbjct: 336 IDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVSEARKLFD---EFDK 392

Query: 321 NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEV 380
             +P+L+ YN +I  +C   ++    R +D M      P++ TYN++ E L KN  V E 
Sbjct: 393 GSIPSLLTYNTLIAGMCEKGELTEAGRLWDDMFERKCKPNAFTYNVLIEGLSKNGNVKEG 452

Query: 381 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 432
            +   EM+++   P           L    + E AI+I +  + NG +  E+
Sbjct: 453 VRVLEEMLESGCFPNKTTFLILFEGLQKLGKEEDAIKIVSMAVMNGKVDKES 504



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 150/348 (43%), Gaps = 12/348 (3%)

Query: 117 NLMVDVL---GKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSF-D 171
           NL +D+L   G  GR+E        + + GV  S+ +  ++ +      ++D     F +
Sbjct: 119 NLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKN 178

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKE 230
                G+  ++   N L+ A+C++ N    A + L+ +  + + P+  ++  +L G+   
Sbjct: 179 SKESFGITPNIFTCNLLVKALCKK-NDIESAYKVLDEIPAMGLVPNLVTYTTILGGYVAR 237

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           G++E A +   EM++R  W P+ +  Y   +    +  +  EA   +  M+     P   
Sbjct: 238 GDMESAKRVLEEMLDR-GWYPDAI-TYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEV 295

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
            +   +  L K   S  A  ++D M+   F  MP+  +   VI  LC +  VD     + 
Sbjct: 296 TYGVMIRALCKEKKSGEARNMFDEMLDRSF--MPDSSLCCKVIDALCEDHKVDEACGLWR 353

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
           +M+ +   PD+   + +   L K  RV E  K F E  K    P+ L   T I  + +  
Sbjct: 354 KMLKNNCMPDNALLSTLIHWLCKEGRVSEARKLFDEFDKGSI-PSLLTYNTLIAGMCEKG 412

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
           E   A  +W+ + E    P   + N L+ GL   G + +  R  EEML
Sbjct: 413 ELTEAGRLWDDMFERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLEEML 460



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/360 (22%), Positives = 151/360 (41%), Gaps = 13/360 (3%)

Query: 96  SSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFAS--I 153
           SS   F R    G + S  + N +++VL +N RF+ +    +  KE   ++   F    +
Sbjct: 136 SSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLL 195

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA-ICRQENQTSRAL--EFLNRVK 210
             + C     + A    D +   G+  ++V   ++L   + R + ++++ +  E L+R  
Sbjct: 196 VKALCKKNDIESAYKVLDEIPAMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGW 255

Query: 211 KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270
               PD  ++ +L++G+ K G   EA     +M E+ E  P  V  Y   +  L + K+ 
Sbjct: 256 Y---PDAITYTVLMDGYCKLGRFSEAATVMDDM-EKNEIEPNEV-TYGVMIRALCKEKKS 310

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYN 330
            EA      M   +  P        +D L + +    A  LW  M  +  N MP+  + +
Sbjct: 311 GEARNMFDEMLDRSFMPDSSLCCKVIDALCEDHKVDEACGLWRKM--LKNNCMPDNALLS 368

Query: 331 AVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 390
            +I  LC    V    + FD+    G+ P  LTYN +   + +   + E  + + +M + 
Sbjct: 369 TLIHWLCKEGRVSEARKLFDEFD-KGSIPSLLTYNTLIAGMCEKGELTEAGRLWDDMFER 427

Query: 391 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 450
           + +P        I  L      +  + +   +LE+G  P + +   L  GL+ LG+  D 
Sbjct: 428 KCKPNAFTYNVLIEGLSKNGNVKEGVRVLEEMLESGCFPNKTTFLILFEGLQKLGKEEDA 487



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 83/409 (20%), Positives = 157/409 (38%), Gaps = 52/409 (12%)

Query: 98  AVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-------TF 150
           A+  F +AG+      + ++    +L K  R  + ++ V  +  D   S P        F
Sbjct: 63  ALQIFLYAGKSHPGFTHNYDTYHSILFKLSR-ARAFDPVESLMADLRNSYPPIKCGENLF 121

Query: 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK 210
             +  +Y  AG+Y+ ++  F  +   GV++ V ++N+LL+ + + +          + V 
Sbjct: 122 IDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQR--------FDLVH 173

Query: 211 KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270
            +     +SF I                              ++      +  L +   +
Sbjct: 174 AMFKNSKESFGI----------------------------TPNIFTCNLLVKALCKKNDI 205

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYN 330
           + A K L  +      P L  ++  L   V   D   A ++ + M+  G+   P+ I Y 
Sbjct: 206 ESAYKVLDEIPAMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGW--YPDAITYT 263

Query: 331 AVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 390
            ++   C            D M  +   P+ +TY ++   L K K+  E    F EM+  
Sbjct: 264 VLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLDR 323

Query: 391 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 450
            + P    C   I  L +  + + A  +W  +L+N  +P  A  + L+  L   GR+S+ 
Sbjct: 324 SFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVSEA 383

Query: 451 RRFAEEMLNRRI---LIYEVTMHKL-KKAFYNESRSMRDIFDSLERRCK 495
           R+  +E     I   L Y   +  + +K    E+  + D  D  ER+CK
Sbjct: 384 RKLFDEFDKGSIPSLLTYNTLIAGMCEKGELTEAGRLWD--DMFERKCK 430


>gi|297801450|ref|XP_002868609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314445|gb|EFH44868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 526

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 88/384 (22%), Positives = 170/384 (44%), Gaps = 16/384 (4%)

Query: 119 MVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           +++V+ K  +F+ + N  + ++  GV + L T   + + +C + +   A      +   G
Sbjct: 77  LLNVIAKMKKFDVVINLCKHLQIMGVSNDLYTCNLLMNCFCQSSQPCLASSFLGKLMKLG 136

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEA 236
            E D+    SL++  C   N+   A+  +N++ ++ + PD   +  +++   K G+V+ A
Sbjct: 137 FEPDIFTFTSLINGFCLG-NRIEEAMSMVNQMVEMGIKPDVVIYTTIIDSLCKNGHVDNA 195

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
              F +M E +   P+ V+ Y + +  L    +  +A   LR M      P +  F+  +
Sbjct: 196 LSLFNQM-ENYGIRPD-VVMYTSLVNGLCNSGRWRDADLLLRGMMKRKIKPDVITFNALI 253

Query: 297 DILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG 356
           D  VK      A +L++ M  I  ++ PN+  Y ++I  LC    +D   + F  M   G
Sbjct: 254 DAFVKEGKLLDAKELYNEM--IQMSIAPNIFTYTSLINGLCMEGRLDEARQMFYLMETKG 311

Query: 357 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 416
            FPD + Y  +     K K+V +  K F+EM +       +   T I       +P +A 
Sbjct: 312 CFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTLIQGFGLVGKPNVAQ 371

Query: 417 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR-------ILIYEVTM 469
           E++ +++  G+ P   + N LL  L   G+++      E+M  R        I  Y V +
Sbjct: 372 EVFGHMVSRGVPPNIRTYNVLLHCLCYNGKVNKALMIFEDMQKREIDGVPPNIRTYNVLL 431

Query: 470 HKLKKAFYNESRSMRDIFDSLERR 493
           H L   +  +      +F  +++R
Sbjct: 432 HGL--CYNGKLEKALMVFGDMQKR 453



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/279 (21%), Positives = 118/279 (42%), Gaps = 12/279 (4%)

Query: 115 AWNLMVDVLGKNGRF---EQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
            +N ++D   K G+    ++++N   +++     ++ T+ S+ +  C  G+ DEA   F 
Sbjct: 248 TFNALIDAFVKEGKLLDAKELYN--EMIQMSIAPNIFTYTSLINGLCMEGRLDEARQMFY 305

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
           +M   G   DVVA  SL++  C+ +        F    +K +  +  ++  L++G+   G
Sbjct: 306 LMETKGCFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTLIQGFGLVG 365

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG---ENCFPT 288
               A + FG MV R    P ++  Y   L  L    +V++AL     M+    +   P 
Sbjct: 366 KPNVAQEVFGHMVSR--GVPPNIRTYNVLLHCLCYNGKVNKALMIFEDMQKREIDGVPPN 423

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
           ++ ++  L  L        A+ ++  M     ++   +I Y  +I  +C    V +    
Sbjct: 424 IRTYNVLLHGLCYNGKLEKALMVFGDMQKRDMDIG--IITYTIIIQGMCKAGKVKDALNL 481

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
           F  +   G  P+ +TY  +   L +   + E    F +M
Sbjct: 482 FCSLPSKGVKPNVVTYTTMISGLFREGLMLEAHVLFRKM 520



 Score = 39.7 bits (91), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 34/174 (19%), Positives = 72/174 (41%), Gaps = 17/174 (9%)

Query: 76  GIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNA 135
           G++  P++  EV             F     RG   +   +N+++  L  NG+  +    
Sbjct: 362 GLVGKPNVAQEV-------------FGHMVSRGVPPNIRTYNVLLHCLCYNGKVNKALMI 408

Query: 136 VRVMKEDGVLSLP----TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              M++  +  +P    T+  +    C  GK ++A+M F  M    ++  ++    ++  
Sbjct: 409 FEDMQKREIDGVPPNIRTYNVLLHGLCYNGKLEKALMVFGDMQKRDMDIGIITYTIIIQG 468

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245
           +C+          F +   K V P+  ++  ++ G  +EG + EA+  F +M E
Sbjct: 469 MCKAGKVKDALNLFCSLPSKGVKPNVVTYTTMISGLFREGLMLEAHVLFRKMKE 522


>gi|356561955|ref|XP_003549241.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial-like [Glycine max]
          Length = 622

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 94/435 (21%), Positives = 189/435 (43%), Gaps = 46/435 (10%)

Query: 68  IESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGK 125
           + + L   GI P P L+  V      SP      F WA      R  P  ++ +V+ L K
Sbjct: 111 LHAELDRAGIEPDPALLLAVFDRFGSSPKLLHSLFLWAQTRPAFRPGPKLFDAVVNALAK 170

Query: 126 NGRFEQMWNAV---------RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176
              F+  W  V            +++ ++S+ TFA +   Y  AG    A+ +++  + +
Sbjct: 171 AREFDAAWKLVLHHAEKDGEEEGEKERLVSVGTFAIMIRRYARAGMSKLAIRTYEFATNN 230

Query: 177 ------GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD----PDGDSFAILLEG 226
                 G E  ++ +  L+ ++C++ +    +  FL   KK +D    P    + I+L G
Sbjct: 231 KSIVDSGSEMSLLEI--LMDSLCKEGSVREASEYFL--WKKELDLSWVPSIRVYNIMLNG 286

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
           W +   +++  + + EM E        V+ Y T +    R ++V++AL+ +  M  E   
Sbjct: 287 WFRLRKLKQGERLWAEMKENMR---PTVVTYGTLVEGYCRMRRVEKALEMVGDMTKEGIA 343

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDI--MVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
           P    ++  +D L +      A+ + +   ++ IG    P    YN+++   C   D+  
Sbjct: 344 PNAIVYNPIIDALAEAGRFKEALGMLERFHVLEIG----PTDSTYNSLVKGFCKAGDLVG 399

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
             +    M+  G  P + TYN  F    + +++ E    + ++I++ + P  L     + 
Sbjct: 400 ASKILKMMISRGFLPSATTYNYFFRYFSRCRKIEEGMNLYTKLIQSGYTPDRLTYHLLVK 459

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA------EEML 458
           ML + ++ ++A+++   +  NG   ++ + + +LV L     L  VRR        E+M+
Sbjct: 460 MLCEEEKLDLAVQVSKEMRHNGY-DMDLATSTMLVHL-----LCKVRRLEEAFVEFEDMI 513

Query: 459 NRRILIYEVTMHKLK 473
            R I+   +T  ++K
Sbjct: 514 RRGIVPQYLTFQRMK 528



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/283 (20%), Positives = 122/283 (43%), Gaps = 12/283 (4%)

Query: 116 WNLMVD---VLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           +N+M++    L K  + E++W     MKE+   ++ T+ ++ + YC   + ++A+     
Sbjct: 280 YNIMLNGWFRLRKLKQGERLWAE---MKENMRPTVVTYGTLVEGYCRMRRVEKALEMVGD 336

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEG 231
           M+  G+  + +  N ++ A+  +  +   AL  L R   + + P   ++  L++G+ K G
Sbjct: 337 MTKEGIAPNAIVYNPIIDALA-EAGRFKEALGMLERFHVLEIGPTDSTYNSLVKGFCKAG 395

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           ++  A+K    M+ R  + P     Y  F     R ++++E +     +      P    
Sbjct: 396 DLVGASKILKMMISR-GFLPSAT-TYNYFFRYFSRCRKIEEGMNLYTKLIQSGYTPDRLT 453

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           +   + +L +      AVQ+   M   G+++  +L     ++ LLC    ++  F  F+ 
Sbjct: 454 YHLLVKMLCEEEKLDLAVQVSKEMRHNGYDM--DLATSTMLVHLLCKVRRLEEAFVEFED 511

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
           M+  G  P  LT+  +   L K       +K    M    + P
Sbjct: 512 MIRRGIVPQYLTFQRMKADLKKQGMTEMAQKLCKLMSSVPYSP 554


>gi|242046334|ref|XP_002461038.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
 gi|241924415|gb|EER97559.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
          Length = 595

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 152/314 (48%), Gaps = 11/314 (3%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR- 208
           ++ +   YC +G++ +    F+ MS  G++ DV+    L+  +C+ E +T +A +  +  
Sbjct: 196 YSCLLRGYCRSGRWQDVGKVFEDMSRRGIKPDVIMFTGLIDDLCK-EGKTGKAAKVKDMM 254

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           V++ ++P+  ++ +L+    KEG+V EA     EM ++    P+ V+ Y T +  L    
Sbjct: 255 VQRGLEPNVVTYNVLINSLCKEGSVREALTLRKEMDDK-GVAPD-VVTYNTLIAGLSGVL 312

Query: 269 QVDEALKFLRVM-KGENCF-PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNL 326
           ++DEA+ FL  M +G+    P +  F++ +  L K+   T AV++ ++M   G   M NL
Sbjct: 313 EMDEAMSFLEEMIQGDTVVEPDVVTFNSVIHGLCKIGRMTQAVKVREMMAERG--CMCNL 370

Query: 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 386
           + YN +IG       V       D++   G  PDS TY+++     K   V   EKF   
Sbjct: 371 VTYNYLIGGFLRVHKVKMAMNLMDELAISGLEPDSFTYSILINGFSKMWEVDRAEKFLCT 430

Query: 387 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV-GLRNLG 445
           M +   +    +    +  +      E A+ ++N + +N    L+A A   ++ G    G
Sbjct: 431 MRQRGIKAELFHYIPLLAAMCQQGMMERAMGLFNEMDKN--CGLDAIAYSTMIHGACKSG 488

Query: 446 RLSDVRRFAEEMLN 459
            +  V++  ++ML+
Sbjct: 489 DMKTVKQLIQDMLD 502



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 114/295 (38%), Gaps = 43/295 (14%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           ++ ++    C + +  EAV     M   GV  DVV   +L+  +C   ++   ALE L+ 
Sbjct: 125 SYTTVMRGLCASRRTGEAVALLRSMQASGVRADVVTYGTLIRGLC-DASELDAALELLDE 183

Query: 209 V-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           +    V P+   ++ LL G+ + G  ++  K F +M  R                     
Sbjct: 184 MCGSGVQPNVVVYSCLLRGYCRSGRWQDVGKVFEDMSRR--------------------- 222

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
                              P +  F+  +D L K   +  A ++ D+MV  G  L PN++
Sbjct: 223 ----------------GIKPDVIMFTGLIDDLCKEGKTGKAAKVKDMMVQRG--LEPNVV 264

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            YN +I  LC    V        +M   G  PD +TYN +   L     + E   F  EM
Sbjct: 265 TYNVLINSLCKEGSVREALTLRKEMDDKGVAPDVVTYNTLIAGLSGVLEMDEAMSFLEEM 324

Query: 388 IKNEW--QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 440
           I+ +   +P  +   + I  L        A+++   + E G +    + N L+ G
Sbjct: 325 IQGDTVVEPDVVTFNSVIHGLCKIGRMTQAVKVREMMAERGCMCNLVTYNYLIGG 379



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/207 (20%), Positives = 89/207 (42%), Gaps = 2/207 (0%)

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
           + ++Y T +  L   ++  EA+  LR M+       +  +   +  L   ++   A++L 
Sbjct: 122 NAVSYTTVMRGLCASRRTGEAVALLRSMQASGVRADVVTYGTLIRGLCDASELDAALELL 181

Query: 313 DIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 372
           D M G G    PN+++Y+ ++   C +    +V + F+ M   G  PD + +  + + L 
Sbjct: 182 DEMCGSGVQ--PNVVVYSCLLRGYCRSGRWQDVGKVFEDMSRRGIKPDVIMFTGLIDDLC 239

Query: 373 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 432
           K  +  +  K    M++   +P  +     I  L        A+ +   + + G+ P   
Sbjct: 240 KEGKTGKAAKVKDMMVQRGLEPNVVTYNVLINSLCKEGSVREALTLRKEMDDKGVAPDVV 299

Query: 433 SANELLVGLRNLGRLSDVRRFAEEMLN 459
           + N L+ GL  +  + +   F EEM+ 
Sbjct: 300 TYNTLIAGLSGVLEMDEAMSFLEEMIQ 326



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/260 (22%), Positives = 109/260 (41%), Gaps = 11/260 (4%)

Query: 129 FEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSL 188
            E+M     V++ D V    TF S+    C  G+  +AV   ++M+  G   ++V  N L
Sbjct: 321 LEEMIQGDTVVEPDVV----TFNSVIHGLCKIGRMTQAVKVREMMAERGCMCNLVTYNYL 376

Query: 189 LSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF 247
           +    R  ++   A+  ++ +    ++PD  +++IL+ G+ K   V+ A K    M +R 
Sbjct: 377 IGGFLRV-HKVKMAMNLMDELAISGLEPDSFTYSILINGFSKMWEVDRAEKFLCTMRQR- 434

Query: 248 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 307
                 +  Y   L  + +   ++ A+     M  +NC      +S  +    K  D   
Sbjct: 435 -GIKAELFHYIPLLAAMCQQGMMERAMGLFNEMD-KNCGLDAIAYSTMIHGACKSGDMKT 492

Query: 308 AVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMI 367
             QL   M+  G  L P+ + Y+ +I +     D++   R   QM   G  PD   ++ +
Sbjct: 493 VKQLIQDMLDEG--LAPDAVTYSMLINMYAKLGDLEEAERVLKQMTASGFVPDVAVFDSL 550

Query: 368 FECLIKNKRVHEVEKFFHEM 387
            +      +  +V K  HEM
Sbjct: 551 IKGYSAEGQTDKVLKLIHEM 570



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 67/298 (22%), Positives = 126/298 (42%), Gaps = 22/298 (7%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG   +   +N++++ L K G   +     + M + GV   + T+ ++     G  + DE
Sbjct: 257 RGLEPNVVTYNVLINSLCKEGSVREALTLRKEMDDKGVAPDVVTYNTLIAGLSGVLEMDE 316

Query: 166 AVMSFDVMSMHG---VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD---- 218
           A MSF    + G   VE DVV  NS++  +C+    T        +V++++   G     
Sbjct: 317 A-MSFLEEMIQGDTVVEPDVVTFNSVIHGLCKIGRMTQAV-----KVREMMAERGCMCNL 370

Query: 219 -SFAILLEGWEKEGNVEEANKTFGEM-VERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
            ++  L+ G+ +   V+ A     E+ +   E +      Y   +    +  +VD A KF
Sbjct: 371 VTYNYLIGGFLRVHKVKMAMNLMDELAISGLEPDS---FTYSILINGFSKMWEVDRAEKF 427

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLL 336
           L  M+       L  +   L  + +      A+ L++ M     N   + I Y+ +I   
Sbjct: 428 LCTMRQRGIKAELFHYIPLLAAMCQQGMMERAMGLFNEM---DKNCGLDAIAYSTMIHGA 484

Query: 337 CNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
           C + D+  V +    M+  G  PD++TY+M+     K   + E E+   +M  + + P
Sbjct: 485 CKSGDMKTVKQLIQDMLDEGLAPDAVTYSMLINMYAKLGDLEEAERVLKQMTASGFVP 542



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/223 (21%), Positives = 91/223 (40%), Gaps = 7/223 (3%)

Query: 255 LAYETFLITLIR--GKQVDEALKFLRVMKGEN---CFPTLKFFSNALDILVKLNDSTHAV 309
           ++Y T L  L R  G  + +A   L  M  E      P    ++  +  L     +  AV
Sbjct: 84  VSYNTVLAALCRRGGDHLRQARSLLVDMSREAHPAARPNAVSYTTVMRGLCASRRTGEAV 143

Query: 310 QLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFE 369
            L   M   G     +++ Y  +I  LC+  ++D      D+M   G  P+ + Y+ +  
Sbjct: 144 ALLRSMQASGVR--ADVVTYGTLIRGLCDASELDAALELLDEMCGSGVQPNVVVYSCLLR 201

Query: 370 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
              ++ R  +V K F +M +   +P  +     I  L    +   A ++ + +++ G+ P
Sbjct: 202 GYCRSGRWQDVGKVFEDMSRRGIKPDVIMFTGLIDDLCKEGKTGKAAKVKDMMVQRGLEP 261

Query: 430 LEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
              + N L+  L   G + +     +EM ++ +    VT + L
Sbjct: 262 NVVTYNVLINSLCKEGSVREALTLRKEMDDKGVAPDVVTYNTL 304


>gi|255660874|gb|ACU25606.1| pentatricopeptide repeat-containing protein [Verbena canescens]
          Length = 484

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 99/399 (24%), Positives = 176/399 (44%), Gaps = 25/399 (6%)

Query: 77  IIPTPD--LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLM--VDVLGKNGRFEQM 132
           ++P+ D  LV+ VL  S  +   A+ FFRW  R           +  +++LG+  +    
Sbjct: 6   LVPSFDHELVYNVLH-SSKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +  M + G+      +  + DSY   G   E+V  F  M   GVE+ + + N+L   
Sbjct: 65  RCILLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKV 124

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           I R+         F   + + ++P   +F +++ G+   G VE AN+ F +M  R E +P
Sbjct: 125 ILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSR-EISP 183

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           + V+ Y T +    R K+++EA K+   MKG N  PT+  ++  +   V ++    A++L
Sbjct: 184 D-VVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242

Query: 312 WDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECL 371
            + M G G  + PN I Y+ ++  LCN + +        +M+     P   T N IF  L
Sbjct: 243 VEEMKGFG--IKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAP---TDNSIFLRL 297

Query: 372 I----KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 427
           I    K+  +         MI+        +    I     A + + A+++ + ++E  I
Sbjct: 298 ISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGILIENFCKAGQYDKAVKLLDKLIEKDI 357

Query: 428 -------LPLEASANELLVG-LRNLGRLSDVRRFAEEML 458
                  L LE SA  L++  L N G+ S       +++
Sbjct: 358 ILRPQSTLHLEPSAYNLMIEYLCNNGQASKAETLVRQLM 396



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 111/260 (42%), Gaps = 47/260 (18%)

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM----VERFEWNPEHVLAYETF 260
            L+  KK ++ D D + ++++ + KEG V+E+ K F +M    VER       + +Y   
Sbjct: 68  LLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVER------TIKSYNAL 121

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF 320
              ++R  +   A ++   M  E   PT   F+               V +W      GF
Sbjct: 122 FKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFN---------------VMIW------GF 160

Query: 321 NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEV 380
            L                +  V+   RFF+ M      PD +TYN +     + K++ E 
Sbjct: 161 FL----------------SGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEA 204

Query: 381 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 440
           EK+F EM     +PT +   T I   +  D+ + A+ +   +   GI P   + + LL G
Sbjct: 205 EKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPG 264

Query: 441 LRNLGRLSDVRRFAEEMLNR 460
           L N  ++S+ R   +EM+++
Sbjct: 265 LCNAEKMSEARVILKEMMDK 284



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 53/300 (17%), Positives = 119/300 (39%), Gaps = 17/300 (5%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           + + +SP    +N M++   +  + E+       MK   +  ++ T+ ++   Y    + 
Sbjct: 177 KSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQV 236

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS-FAI 222
           D+A+   + M   G++ + +  ++LL  +C  E  +   +     + K + P  +S F  
Sbjct: 237 DDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFLR 296

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+    K GN++ A      M+ R    P     Y   +    +  Q D+A+K L  +  
Sbjct: 297 LISSHCKSGNLDAAADVLKAMI-RLSV-PTEAGHYGILIENFCKAGQYDKAVKLLDKLIE 354

Query: 283 ENCF----PTLKFFSNALDILVKL----NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
           ++       TL    +A +++++       ++ A  L   ++ +G   + +    N +I 
Sbjct: 355 KDIILRPQSTLHLEPSAYNLMIEYLCNNGQASKAETLVRQLMKLG---VQDPTALNTLIR 411

Query: 335 LLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
                   D+ F     M+      +   YN + +  +K     + +     MI+N+  P
Sbjct: 412 GHSQEGSPDSAFELLKIMLRRKVDSEKSAYNSLVQSYLKKNEPXDAKAALDSMIENDHLP 471



 Score = 38.5 bits (88), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 55/258 (21%), Positives = 110/258 (42%), Gaps = 24/258 (9%)

Query: 130 EQMWNAVRVMKEDGVLSLP----TFASIFDSYCGAGKYDEA-VMSFDVMSMHGVEQDVVA 184
           +Q+ +A+R+++E     +     T++++    C A K  EA V+  ++M  +    D   
Sbjct: 234 DQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSI 293

Query: 185 VNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244
              L+S+ C+  N  + A      ++  V  +   + IL+E + K G  ++A K   +++
Sbjct: 294 FLRLISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGILIENFCKAGQYDKAVKLLDKLI 353

Query: 245 ER-FEWNPEHVL-----AYETFLITLIRGKQVDEALKFLR-VMKGENCFPTLKFFSNALD 297
           E+     P+  L     AY   +  L    Q  +A   +R +MK     PT      AL+
Sbjct: 354 EKDIILRPQSTLHLEPSAYNLMIEYLCNNGQASKAETLVRQLMKLGVQDPT------ALN 407

Query: 298 ILVKLNDST----HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
            L++ +        A +L  IM+    +   +   YN+++      ++  +     D M+
Sbjct: 408 TLIRGHSQEGSPDSAFELLKIMLRRKVDSEKS--AYNSLVQSYLKKNEPXDAKAALDSMI 465

Query: 354 FHGAFPDSLTYNMIFECL 371
            +   PDS  +  + E L
Sbjct: 466 ENDHLPDSALFRSVMESL 483


>gi|449531231|ref|XP_004172591.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like, partial [Cucumis sativus]
          Length = 602

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 121/268 (45%), Gaps = 7/268 (2%)

Query: 109 QRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDE 165
           +RL P  Y +  +++   K G  +     V  M+  GV ++   F ++ D YC  G  DE
Sbjct: 322 RRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDE 381

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A+   ++M   G E D    N + S  CR   +       L   ++ V P+  SF+IL++
Sbjct: 382 ALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILID 441

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
            + KE N  EA + F  M ++       V+ Y  F+    +  +++EA K +  M+    
Sbjct: 442 IYCKEQNFAEARRLFKVMEKK--GKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGL 499

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P    +++ +D      +   A++L++ M  +G N   N++ Y  +I  L  +   D  
Sbjct: 500 MPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLN--RNVVTYTVIISGLSKDGRADEA 557

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIK 373
           F+ +D+M   G  PD   Y+ +   L K
Sbjct: 558 FKLYDEMNKEGIVPDDGIYSSLIASLHK 585



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/313 (21%), Positives = 132/313 (42%), Gaps = 6/313 (1%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           ++ T+  + + Y  + K +EA   FD M   G+E DV    S+++  C+  N     + F
Sbjct: 257 NVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLF 316

Query: 206 LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
               ++ + P+  ++  L+ G  K G ++ A     +M  +      + + + T +    
Sbjct: 317 DEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSK--GVDVNRVIFNTLMDGYC 374

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNAL-DILVKLNDSTHAVQLWDIMVGIGFNLMP 324
           +   +DEAL+   +M+ +  F    F  N +     + N    A +L   M   G  + P
Sbjct: 375 KKGMIDEALRLQNIMQ-QKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERG--VAP 431

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           N++ ++ +I + C   +     R F  M   G  P  +TYN   E   K  ++ E  K  
Sbjct: 432 NVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLI 491

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
           +EM +    P      + I     +   + A+E++N + + G+     +   ++ GL   
Sbjct: 492 NEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVVTYTVIISGLSKD 551

Query: 445 GRLSDVRRFAEEM 457
           GR  +  +  +EM
Sbjct: 552 GRADEAFKLYDEM 564



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 97/232 (41%), Gaps = 7/232 (3%)

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG 319
           FL+ L R   ++  ++FLR M        +  ++  +D L K  +   A  L D +V  G
Sbjct: 159 FLLALKRSGNMELCVEFLRQMVDSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKG 218

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
           F   P++I YN ++       DV  V      M  +    +  TY M+ E   ++ ++ E
Sbjct: 219 FK--PSVITYNTLLNGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEE 276

Query: 380 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 439
            EK F EM+K   +P      + I         + A  +++ + E  ++P   +   L+ 
Sbjct: 277 AEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALIN 336

Query: 440 GLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL-----KKAFYNESRSMRDI 486
           G    G +        +M ++ + +  V  + L     KK   +E+  +++I
Sbjct: 337 GACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNI 388



 Score = 42.7 bits (99), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 28/127 (22%), Positives = 62/127 (48%), Gaps = 3/127 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G+  S   +N  ++   K G+ E+ +  +  M+E G++    T+ S+ D    +G  D 
Sbjct: 462 KGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDR 521

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILL 224
           A+  F+ M   G+ ++VV    ++S + + + +   A +  + + K+ + PD   ++ L+
Sbjct: 522 ALELFNEMPQLGLNRNVVTYTVIISGLSK-DGRADEAFKLYDEMNKEGIVPDDGIYSSLI 580

Query: 225 EGWEKEG 231
               K G
Sbjct: 581 ASLHKVG 587


>gi|15241491|ref|NP_196981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|9755745|emb|CAC01876.1| putative protein [Arabidopsis thaliana]
 gi|332004692|gb|AED92075.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 938

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 115/513 (22%), Positives = 205/513 (39%), Gaps = 69/513 (13%)

Query: 12  IKNKIIPSSSSTTTSPTSHNPHRPTRPRFPTHLDAPYISSSARII--CEILAHASSDDIE 69
           IK   IP S  T+ S T      P      T +      +  R+   CE L  A+     
Sbjct: 25  IKRPQIPESEETSLSITQRR-FDPDLAPIKTRVYVSLFHTLFRLYLSCERLYGAART--L 81

Query: 70  SALACTGIIPTP----DLVHE--VLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVL 123
           SA+   G++P       L+H+  V  L +D  S  + + +    G     +A N+++   
Sbjct: 82  SAMCTFGVVPDSRLWNSLIHQFNVNGLVHDQVS--LIYSKMIACGVSPDVFALNVLIHSF 139

Query: 124 GKNGRFEQMWNAVR--VMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD 181
            K GR     + +R  V+  D V    T+ ++    C  G  DEA      M   G+  D
Sbjct: 140 CKVGRLSFAISLLRNRVISIDTV----TYNTVISGLCEHGLADEAYQFLSEMVKMGILPD 195

Query: 182 VVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD----SFAILLEGWEKEGNVEEAN 237
            V+ N+L+   C+  N          R K +VD   +    +  ILL  +     +EEA 
Sbjct: 196 TVSYNTLIDGFCKVGN--------FVRAKALVDEISELNLITHTILLSSYYNLHAIEEA- 246

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297
             + +MV    ++P+ V+ + + +  L +G +V E    LR M+  + +P    ++  +D
Sbjct: 247 --YRDMVMS-GFDPD-VVTFSSIINRLCKGGKVLEGGLLLREMEEMSVYPNHVTYTTLVD 302

Query: 298 ILVKLNDSTHAVQLWDIMVGIGF---------------------------------NLMP 324
            L K N   HA+ L+  MV  G                                  N +P
Sbjct: 303 SLFKANIYRHALALYSQMVVRGIPVDLVVYTVLMDGLFKAGDLREAEKTFKMLLEDNQVP 362

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           N++ Y A++  LC   D+ +      QM+     P+ +TY+ +    +K   + E     
Sbjct: 363 NVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVIPNVVTYSSMINGYVKKGMLEEAVSLL 422

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
            +M      P      T I  L  A + E+AIE+   +   G+       + L+  L+ +
Sbjct: 423 RKMEDQNVVPNGFTYGTVIDGLFKAGKEEMAIELSKEMRLIGVEENNYILDALVNHLKRI 482

Query: 445 GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFY 477
           GR+ +V+   ++M+++ + + ++    L   F+
Sbjct: 483 GRIKEVKGLVKDMVSKGVTLDQINYTSLIDVFF 515



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 86/386 (22%), Positives = 161/386 (41%), Gaps = 49/386 (12%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVM 173
            ++ M++   K G  E+  + +R M++  V+    T+ ++ D    AGK + A+     M
Sbjct: 401 TYSSMINGYVKKGMLEEAVSLLRKMEDQNVVPNGFTYGTVIDGLFKAGKEEMAIELSKEM 460

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDP----DGDSFAILLEGWEK 229
            + GVE++    N +L A+     +  R  E    VK +V      D  ++  L++ + K
Sbjct: 461 RLIGVEEN----NYILDALVNHLKRIGRIKEVKGLVKDMVSKGVTLDQINYTSLIDVFFK 516

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
            G+ E A     EM ER    P  V++Y   +  +++  +V     + + M+ +   P +
Sbjct: 517 GGDEEAALAWAEEMQER--GMPWDVVSYNVLISGMLKFGKVGADWAY-KGMREKGIEPDI 573

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
             F+  ++   K  DS   ++LWD M   G    P+L+  N V+G+LC N  ++      
Sbjct: 574 ATFNIMMNSQRKQGDSEGILKLWDKMKSCGIK--PSLMSCNIVVGMLCENGKMEEAIHIL 631

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKRVHEV----EKFFHEMIKNEWQPTPLNCATAITM 405
           +QM+     P+  TY +  +   K+KR   +    E      IK   Q      AT   +
Sbjct: 632 NQMMLMEIHPNLTTYRIFLDTSSKHKRADAIFKTHETLLSYGIKLSRQVYNTLIATLCKL 691

Query: 406 LLDADEPEI-------------------------------AIEIWNYILENGILPLEASA 434
            +      +                               A+  ++ ++E GI P  A+ 
Sbjct: 692 GMTKKAAMVMGDMEARGFIPDTVTFNSLMHGYFVGSHVRKALSTYSVMMEAGISPNVATY 751

Query: 435 NELLVGLRNLGRLSDVRRFAEEMLNR 460
           N ++ GL + G + +V ++  EM +R
Sbjct: 752 NTIIRGLSDAGLIKEVDKWLSEMKSR 777



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 78/383 (20%), Positives = 152/383 (39%), Gaps = 37/383 (9%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y  + +V+ L + GR +++   V+ M   GV L    + S+ D +   G  + A+   + 
Sbjct: 470 YILDALVNHLKRIGRIKEVKGLVKDMVSKGVTLDQINYTSLIDVFFKGGDEEAALAWAEE 529

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M   G+  DVV+ N L+S + +   +      +    +K ++PD  +F I++    K+G+
Sbjct: 530 MQERGMPWDVVSYNVLISGMLKF-GKVGADWAYKGMREKGIEPDIATFNIMMNSQRKQGD 588

Query: 233 VE-------------------EANKTFGEMVERFEWNPE-HVL-------------AYET 259
            E                     N   G + E  +     H+L              Y  
Sbjct: 589 SEGILKLWDKMKSCGIKPSLMSCNIVVGMLCENGKMEEAIHILNQMMLMEIHPNLTTYRI 648

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG 319
           FL T  + K+ D   K    +       + + ++  +  L KL  +  A  +   M   G
Sbjct: 649 FLDTSSKHKRADAIFKTHETLLSYGIKLSRQVYNTLIATLCKLGMTKKAAMVMGDMEARG 708

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
           F  +P+ + +N+++        V      +  M+  G  P+  TYN I   L     + E
Sbjct: 709 F--IPDTVTFNSLMHGYFVGSHVRKALSTYSVMMEAGISPNVATYNTIIRGLSDAGLIKE 766

Query: 380 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 439
           V+K+  EM     +P        I+        + ++ I+  ++ +G++P  ++ N L+ 
Sbjct: 767 VDKWLSEMKSRGMRPDDFTYNALISGQAKIGNMKGSMTIYCEMIADGLVPKTSTYNVLIS 826

Query: 440 GLRNLGRLSDVRRFAEEMLNRRI 462
              N+G++   R   +EM  R +
Sbjct: 827 EFANVGKMLQARELLKEMGKRGV 849



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 76/385 (19%), Positives = 156/385 (40%), Gaps = 22/385 (5%)

Query: 82  DLVHEVLQLSYDSPSSAVDFFRWAG--------------RGQRLSPYAWNLMVDVLGKNG 127
           D+V + + L   + +S +D F   G              RG      ++N+++  + K G
Sbjct: 494 DMVSKGVTLDQINYTSLIDVFFKGGDEEAALAWAEEMQERGMPWDVVSYNVLISGMLKFG 553

Query: 128 RFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN 186
           +    W A + M+E G+   + TF  + +S    G  +  +  +D M   G++  +++ N
Sbjct: 554 KVGADW-AYKGMREKGIEPDIATFNIMMNSQRKQGDSEGILKLWDKMKSCGIKPSLMSCN 612

Query: 187 SLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245
            ++  +C +  +   A+  LN++  + + P+  ++ I L+   K    +   KT   ++ 
Sbjct: 613 IVVGMLC-ENGKMEEAIHILNQMMLMEIHPNLTTYRIFLDTSSKHKRADAIFKTHETLLS 671

Query: 246 RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS 305
                   V  Y T + TL +     +A   +  M+     P    F++ +      +  
Sbjct: 672 YGIKLSRQV--YNTLIATLCKLGMTKKAAMVMGDMEARGFIPDTVTFNSLMHGYFVGSHV 729

Query: 306 THAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYN 365
             A+  + +M+  G +  PN+  YN +I  L +   +  V ++  +M   G  PD  TYN
Sbjct: 730 RKALSTYSVMMEAGIS--PNVATYNTIIRGLSDAGLIKEVDKWLSEMKSRGMRPDDFTYN 787

Query: 366 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 425
            +     K   +      + EMI +   P        I+   +  +   A E+   + + 
Sbjct: 788 ALISGQAKIGNMKGSMTIYCEMIADGLVPKTSTYNVLISEFANVGKMLQARELLKEMGKR 847

Query: 426 GILPLEASANELLVGLRNLGRLSDV 450
           G+ P  ++   ++ GL  L    DV
Sbjct: 848 GVSPNTSTYCTMISGLCKLCTHPDV 872


>gi|125561029|gb|EAZ06477.1| hypothetical protein OsI_28715 [Oryza sativa Indica Group]
          Length = 621

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/344 (23%), Positives = 140/344 (40%), Gaps = 8/344 (2%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           + S    YC AG    A   F +M + G  +      +LL  +            F+   
Sbjct: 110 YTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMTVFVGMR 169

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGE-MVERFEWNPEHVLAYETFLITLIRGK 268
                PD   +A ++ G  + G  EEA     E M   FE N   ++ Y   +       
Sbjct: 170 ADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPN---IVVYNALIDGYCNAG 226

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           +++ ALK    M G  C P ++ ++  +  L K      A+ L+  MV  G  L PN++ 
Sbjct: 227 EMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAG--LEPNVVT 284

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           Y A+I   CN   +   FR    M  +G  P+  T++++ + L K ++V E + F   ++
Sbjct: 285 YTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLV 344

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
           K   +   +   + I  L    + + A E+   ++  G +P   S + L+ GL    +LS
Sbjct: 345 KKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLS 404

Query: 449 DVRRFAEEMLNRRILIYEVTMHKLKKAFYNE--SRSMRDIFDSL 490
                 E+M+ + I    VT   +      E  S   + IFD +
Sbjct: 405 QATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKM 448



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 70/318 (22%), Positives = 138/318 (43%), Gaps = 11/318 (3%)

Query: 108 GQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYD 164
           G R SP    +  ++  L K+G+ E+       M E G+  ++ T+ ++    C  G   
Sbjct: 240 GNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQ 299

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
            A     +M  +G+  +    + L+ A+C++E      L   + VKK V  +   +  L+
Sbjct: 300 CAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLI 359

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM--KG 282
           +G  K G ++ A++   +M+        H  +Y + +  L R K++ +A   L  M  KG
Sbjct: 360 DGLCKTGKIDAADELMQKMISEGFVPDAH--SYSSLIDGLCRQKKLSQATLMLEDMMEKG 417

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
               P    ++  +D LV+   S    +++D M+  G N  P+++ Y   +   C    +
Sbjct: 418 IQASPVT--YTIIIDELVREVGSEGPKKIFDKMIATGIN--PDIVTYTVFVRSYCEEGRM 473

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
           ++      QMV  G FP+ +TYN +         V +    F  M+   W+P   +    
Sbjct: 474 EDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVL 533

Query: 403 ITMLLDADEPEIAIEIWN 420
           + +++     + +++IW 
Sbjct: 534 LRLVVKKSSSDNSVDIWK 551



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 79/374 (21%), Positives = 148/374 (39%), Gaps = 7/374 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG   + + +  ++  L   G   +       M+ D        +A++    C AG+ +E
Sbjct: 136 RGCLRTAFTYTALLHGLLGAGMVREAMTVFVGMRADSCAPDTHVYATMVHGLCEAGRTEE 195

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A +  +    +G E ++V  N+L+   C           F         P+  ++  L+ 
Sbjct: 196 AEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIH 255

Query: 226 GWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           G  K G VE A   F  MVE   E N   V+ Y   +        +  A + L +M+   
Sbjct: 256 GLCKSGKVERAMVLFSRMVEAGLEPN---VVTYTALIQGQCNEGHLQCAFRLLHLMETNG 312

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
             P    FS  +D L K      A      +V  G  +  N ++Y ++I  LC    +D 
Sbjct: 313 LVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKV--NEVVYTSLIDGLCKTGKIDA 370

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404
                 +M+  G  PD+ +Y+ + + L + K++ +      +M++   Q +P+     I 
Sbjct: 371 ADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIID 430

Query: 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 464
            L+     E   +I++ ++  GI P   +    +      GR+ D      +M++R +  
Sbjct: 431 ELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFP 490

Query: 465 YEVTMHKLKKAFYN 478
             VT + L + + N
Sbjct: 491 NLVTYNTLIRGYAN 504



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 135/327 (41%), Gaps = 11/327 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSFDV 172
           +N ++D     G  E        M  DG    P   T+  +    C +GK + A++ F  
Sbjct: 215 YNALIDGYCNAGEMEHALKVFEGM--DGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSR 272

Query: 173 MSMHGVEQDVVAVNSLLSAICRQEN-QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
           M   G+E +VV   +L+   C + + Q +  L  L     +V P+  +F++L++   K  
Sbjct: 273 MVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLV-PNDWTFSVLIDALCKRE 331

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            VEEA    G +V++     E V  Y + +  L +  ++D A + ++ M  E   P    
Sbjct: 332 KVEEAQLFLGSLVKKGVKVNEVV--YTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHS 389

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           +S+ +D L +    + A  + + M+  G    P  + Y  +I  L      +   + FD+
Sbjct: 390 YSSLIDGLCRQKKLSQATLMLEDMMEKGIQASP--VTYTIIIDELVREVGSEGPKKIFDK 447

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M+  G  PD +TY +      +  R+ + E    +M+     P  +   T I    +   
Sbjct: 448 MIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGL 507

Query: 412 PEIAIEIWNYILENGILPLEASANELL 438
              A   +  ++  G  P E S   LL
Sbjct: 508 VSQAFSTFEVMVGKGWKPNEDSYTVLL 534



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/300 (21%), Positives = 125/300 (41%), Gaps = 19/300 (6%)

Query: 111 LSPYAW--NLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAV 167
           L P  W  ++++D L K  + E+    +  + + GV ++   + S+ D  C  GK D A 
Sbjct: 313 LVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAAD 372

Query: 168 MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW 227
                M   G   D  + +SL+  +CRQ+  +   L   + ++K +     ++ I+++  
Sbjct: 373 ELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDEL 432

Query: 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
            +E   E   K F +M+     NP+ ++ Y  F+ +     ++++A   +  M     FP
Sbjct: 433 VREVGSEGPKKIFDKMIAT-GINPD-IVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFP 490

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN--- 344
            L  ++  +     L   + A   +++MVG G+   PN   Y  ++ L+      DN   
Sbjct: 491 NLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWK--PNEDSYTVLLRLVVKKSSSDNSVD 548

Query: 345 VFRFFDQMVFHGAFPD---------SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 395
           +++  D         D         +  Y+    CL +  R+ E + FF  M      P+
Sbjct: 549 IWKIADMKDLQVLLEDITERQLPLAADIYSCFIRCLCRVDRLEEAKHFFMGMQNANLTPS 608



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/279 (21%), Positives = 118/279 (42%), Gaps = 21/279 (7%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDE 165
           +G +++   +  ++D L K G+ +     ++ M  +G V    +++S+ D  C   K  +
Sbjct: 346 KGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQ 405

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A +  + M   G++   V    ++  + R+         F   +   ++PD  ++ + + 
Sbjct: 406 ATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVR 465

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ----VDEALKFLRVMK 281
            + +EG +E+A     +MV+R  +   +++ Y T    LIRG      V +A     VM 
Sbjct: 466 SYCEEGRMEDAESMIVQMVDRGVF--PNLVTYNT----LIRGYANLGLVSQAFSTFEVMV 519

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI----------MYNA 331
           G+   P    ++  L ++VK + S ++V +W I       ++   I          +Y+ 
Sbjct: 520 GKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQVLLEDITERQLPLAADIYSC 579

Query: 332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
            I  LC  D ++    FF  M      P    Y  I +C
Sbjct: 580 FIRCLCRVDRLEEAKHFFMGMQNANLTPSEDVYTSIIDC 618


>gi|413926076|gb|AFW66008.1| hypothetical protein ZEAMMB73_411794 [Zea mays]
          Length = 633

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 90/414 (21%), Positives = 175/414 (42%), Gaps = 42/414 (10%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCG-AGKYDE 165
           +G +L  +A+N++++ L K G  +Q +     MK++         +I     G AGK  +
Sbjct: 212 KGYKLDIFAYNMLLNALAKAGMVDQAYQVFEDMKQNYCDPDAYTYTILIRMSGKAGKTTK 271

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAI--------------------CRQENQTSRALEF 205
            V   + M   G   +++A N+++ A+                    CR  NQ + ++  
Sbjct: 272 FVSLLEEMVSEGCVLNLIAYNTVIEALGKNKMVDEAIFMLSKMIESDCR-PNQFTYSIML 330

Query: 206 --------LNRVKKIVDPDGDS-----FAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
                   L+R+ +I+D          ++ L++   K G+  EA+  F  M    E    
Sbjct: 331 DVLSTGGQLHRLNEILDICSGCLNRPVYSYLIKALCKSGHASEAHSVFCRMWNSHEKGDR 390

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
           +  A+ + L  L   ++  EA+  L +M  +     +  ++     L KL   +    L+
Sbjct: 391 Y--AFVSMLEALCNAEKTTEAIDLLHMMPEKGITTDVGMYNMIFSALGKLKQVSFMSSLY 448

Query: 313 DIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 372
           D M   G  ++P++  YN +I        VD     F++M      PD +TYN +  CL 
Sbjct: 449 DTMRANG--VVPDVFTYNIMISSFGRVGLVDKASELFEEMEDGSCKPDVVTYNSMINCLG 506

Query: 373 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 432
           KN  + E    F +M +  + P     +  I     +++ ++A  +++ ++  G +P   
Sbjct: 507 KNGDLDEAHMLFKDMQEKGYDPDVFTYSILIECFGKSNKVDMACSLFDEMVAQGCIPNIV 566

Query: 433 SANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDI 486
           + N LL  L   G+ ++  +F E +  + +    +T   L++    ESRS R +
Sbjct: 567 TYNILLDCLERRGKTTEAHKFYETLKQQGLTPDSITYSILERL---ESRSQRTV 617



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 127/274 (46%), Gaps = 17/274 (6%)

Query: 116 WNLMVDVLGKNGR-------FEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVM 168
           ++ ++  L K+G        F +MWN+     E G      F S+ ++ C A K  EA+ 
Sbjct: 358 YSYLIKALCKSGHASEAHSVFCRMWNS----HEKG--DRYAFVSMLEALCNAEKTTEAID 411

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
              +M   G+  DV   N + SA+ + +  +  +  +       V PD  ++ I++  + 
Sbjct: 412 LLHMMPEKGITTDVGMYNMIFSALGKLKQVSFMSSLYDTMRANGVVPDVFTYNIMISSFG 471

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           + G V++A++ F EM E     P+ V+ Y + +  L +   +DEA    + M+ +   P 
Sbjct: 472 RVGLVDKASELFEEM-EDGSCKPD-VVTYNSMINCLGKNGDLDEAHMLFKDMQEKGYDPD 529

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
           +  +S  ++   K N    A  L+D MV  G   +PN++ YN ++  L          +F
Sbjct: 530 VFTYSILIECFGKSNKVDMACSLFDEMVAQG--CIPNIVTYNILLDCLERRGKTTEAHKF 587

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
           ++ +   G  PDS+TY+++     +++R   + K
Sbjct: 588 YETLKQQGLTPDSITYSILERLESRSQRTVRIRK 621



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 99/476 (20%), Positives = 180/476 (37%), Gaps = 49/476 (10%)

Query: 17  IPSSSSTTTSPTSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTG 76
           I  + S T +PT  +    + PR   HL    I + ARI+   ++H    D++  L    
Sbjct: 25  ITVTVSPTPAPTPLDTRGYSLPR--RHL----ICAVARILRSPVSHTPLLDLDDYLRSLR 78

Query: 77  IIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR---GQRLSPYAWN-LMVDVLGKNGRFEQM 132
           +  T     EV++      S A+ FFR+A     G R   +++N ++V +        + 
Sbjct: 79  LTLTTAEASEVMKALAPDTSLALSFFRFAATSLPGFRHDAFSYNRILVLLFSNRADPAEA 138

Query: 133 WNAVRVMKEDGV------------------------------LSLPTFASIFDSYCGAGK 162
              +  M+ DGV                              L+  T+  +  ++  + +
Sbjct: 139 MRLIAEMERDGVPGNISTVNLLVGMGVEVGRCLDLASKWGLRLNGYTYKCLVQAHLRSRE 198

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
             +    ++ M   G + D+ A N LL+A+ +          F +  +   DPD  ++ I
Sbjct: 199 VWKGFEVYEKMRRKGYKLDIFAYNMLLNALAKAGMVDQAYQVFEDMKQNYCDPDAYTYTI 258

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+    K G   +      EMV   E    +++AY T +  L + K VDEA+  L  M  
Sbjct: 259 LIRMSGKAGKTTKFVSLLEEMVS--EGCVLNLIAYNTVIEALGKNKMVDEAIFMLSKMIE 316

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
            +C P    +S  LD+L          ++ DI  G       N  +Y+ +I  LC +   
Sbjct: 317 SDCRPNQFTYSIMLDVLSTGGQLHRLNEILDICSGC-----LNRPVYSYLIKALCKSGHA 371

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
                 F +M       D   +  + E L   ++  E     H M+  +   T +     
Sbjct: 372 SEAHSVFCRMWNSHEKGDRYAFVSMLEALCNAEKTTEAIDLLH-MMPEKGITTDVGMYNM 430

Query: 403 I-TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
           I + L    +      +++ +  NG++P   + N ++     +G +       EEM
Sbjct: 431 IFSALGKLKQVSFMSSLYDTMRANGVVPDVFTYNIMISSFGRVGLVDKASELFEEM 486


>gi|359490016|ref|XP_002275236.2| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
           chloroplastic-like [Vitis vinifera]
          Length = 1442

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 97/446 (21%), Positives = 184/446 (41%), Gaps = 17/446 (3%)

Query: 59  ILAHASSDDIESALACTGIIPTP-DLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWN 117
           IL   S + +   L    +  TP D    V  +   S   A++ + W       SP A  
Sbjct: 131 ILGLKSEEFVADVLDDRKVQMTPTDFCFVVKWVGQSSWQRALEVYEWLNLRHWYSPNA-R 189

Query: 118 LMVDVLGKNGRFEQMWNAVRVMKEDGVLS---LPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           ++  +L   G+  Q   AV +       S   +  + ++   Y   G++ +     D+M 
Sbjct: 190 MLATILSVLGKANQEALAVEIFARAEAASGNTVQVYNAMMGVYARTGRFTKVQELLDLMR 249

Query: 175 MHGVEQDVVAVNSLLSAICRQENQ-TSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGN 232
             G E D+V+ N+L++A  +     T+ A+E LN V++  + PD  ++  L+    +E N
Sbjct: 250 SRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRSGIQPDIITYNTLISACSRESN 309

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +EEA K + +MV      P+ +  Y   +    R     EA +  + ++ +   P    +
Sbjct: 310 LEEAVKVYNDMVAH-RCQPD-LWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTY 367

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           ++ L    +  +     ++ + MV +GF    + + YN +I +       D  F+ +  M
Sbjct: 368 NSLLYAFAREGNVDKVKEICEDMVKMGFG--KDEMTYNTIIHMYGKRGQHDLAFQLYSDM 425

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
              G  PD++TY ++ + L K   + E  +   EM+    +PT    +  I     A + 
Sbjct: 426 KLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVKPTLRTFSALICGYAKAGKR 485

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVT 468
             A E ++ +L +GI P   + + +L  L          +  +EM+         +YEV 
Sbjct: 486 VEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHALYEVM 545

Query: 469 MHKLKKAFYNESRSMRDIFDSLERRC 494
           +  L K   N    +  +   +E  C
Sbjct: 546 LRVLGKE--NREEDVHKVVKDMEELC 569



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 60/299 (20%), Positives = 120/299 (40%), Gaps = 12/299 (4%)

Query: 152  SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK 211
            ++  +Y  +G Y+ A   F+ M   G    V +VN L+ A+        R  E    +++
Sbjct: 787  ALIHAYAASGCYERARAIFNTMMRDGPSPTVDSVNGLMQALIVD----GRLDELYVVIQE 842

Query: 212  IVDP----DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            + D        S  ++L+ +   GN+ E  K +  M     +   H+  Y   +  L +G
Sbjct: 843  LQDMGFKISKSSITLMLDAFAHAGNIFEVKKIYQGMKAAGYFPTMHL--YRIMIGLLAKG 900

Query: 268  KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
            K+V +    +  M+     P L  +++ L +   + D     Q++ ++   G  L P+  
Sbjct: 901  KRVRDVEAMVSEMEVARFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAG--LKPDED 958

Query: 328  MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
             YN +I + C +   +       +M   G  P   TY  +     K + V + E+ F  +
Sbjct: 959  TYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEGL 1018

Query: 388  IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 446
            +  E +         + M  ++     A ++   + E G+ P  A+ + L+V     G+
Sbjct: 1019 LSKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQ 1077



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 52/265 (19%), Positives = 115/265 (43%), Gaps = 17/265 (6%)

Query: 114  YAWNLMVDVLGKNGRF---EQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSF 170
            + + +M+ +L K  R    E M + + V +    LS+  + S+   Y G G + +    +
Sbjct: 888  HLYRIMIGLLAKGKRVRDVEAMVSEMEVARFKPDLSI--WNSVLKLYTGIGDFKKTGQVY 945

Query: 171  DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEK 229
             ++   G++ D    N+L+   CR + +    L  ++ ++++ ++P  D++  L+  + K
Sbjct: 946  QLIQEAGLKPDEDTYNTLILMYCR-DRRPEEGLSLMHEMRRVGLEPKLDTYKSLISAFGK 1004

Query: 230  EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
               VE+A + F  ++ + E   +    Y   +          +A K L VMK     PT+
Sbjct: 1005 LQMVEQAEELFEGLLSK-ECKLDRSF-YHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTI 1062

Query: 290  KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP-NLIMYNAVIGLLCNNDDVDNVFRF 348
               +    ++V  + S    +   ++  +    +P + + Y++VI     N D +   + 
Sbjct: 1063 ---ATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAYLKNGDHNVAIQK 1119

Query: 349  FDQMVFHGAFPDSLTYNMIFECLIK 373
              +M   G  PD    + I+ C ++
Sbjct: 1120 LMEMKKDGLEPD----HRIWTCFVR 1140


>gi|218191262|gb|EEC73689.1| hypothetical protein OsI_08260 [Oryza sativa Indica Group]
          Length = 595

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 157/355 (44%), Gaps = 16/355 (4%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT-FASIFDSYCG 159
           F ++   G  L    +N+ +D   KNG   +    +  MK  G+      +  + + YC 
Sbjct: 93  FLKFKDSGLHLDKVIYNIAMDTYCKNGNMNEAVKLLNEMKCGGLTPDKIHYTCLINGYCL 152

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGD 218
            G+   A   F+ M    +E D+V  N L S  C+         + L+R+  + ++P+  
Sbjct: 153 KGEMQNAQQVFEEMLKANIEPDIVTYNILASGFCKS-GLVMEVFDLLDRMADQGLEPNSL 211

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV-LAYETFLITLIRGKQVDEA-LKF 276
           ++ I + G+ + GN+ EA   F  + E+     +H+ + Y + +   +     D A + F
Sbjct: 212 TYGIAIVGFCRGGNLSEAEVLFNVVEEK---GIDHIEVMYSSMVCGYLLSGWTDHAYMLF 268

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLL 336
           +RV +  N        S  ++ L ++ +   A  +  IM  +  N++P++I Y+ +I + 
Sbjct: 269 VRVARQGNLVDHFS-CSKLINDLCRVGNVQGASNVCKIM--LEHNVVPDVISYSKLISIY 325

Query: 337 CNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 396
           C N D+D    +F  MV  G   D + Y ++     K  R+ E  + F +M     +P  
Sbjct: 326 CQNGDMDKAHLWFHDMVQRGLSIDVIVYTILMNGYCKAGRLQEACQLFVQMTNLGIKPDV 385

Query: 397 LNCATAITMLLDADEPEIAIEIWNYIL-ENGILPLEASANELLVGLRNLGRLSDV 450
           +    A T+LLD    E   + W  I  E     L A+ N+LL  ++++    DV
Sbjct: 386 I----AYTVLLDGHLKETLQQGWEGIAKERRSFLLRANHNKLLSSMKDMQIEPDV 436



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/260 (22%), Positives = 111/260 (42%), Gaps = 8/260 (3%)

Query: 183 VAVNSLLSAICRQE--NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTF 240
           +A N ++  +C++   ++  + LE  N+ ++  +PD   ++ L++ + K GN+ +A   +
Sbjct: 1   MAYNMVMDGLCKEMRLDEAEKLLE--NKARQGSNPDVYGYSYLIQSYCKMGNLIKAVDHY 58

Query: 241 GEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV 300
             MV        H+++Y   L    +     E + +    K          ++ A+D   
Sbjct: 59  EAMVSHGIETNCHIVSY--LLQCFRKLGMTSEVIAYFLKFKDSGLHLDKVIYNIAMDTYC 116

Query: 301 KLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPD 360
           K  +   AV+L + M   G  L P+ I Y  +I   C   ++ N  + F++M+     PD
Sbjct: 117 KNGNMNEAVKLLNEMKCGG--LTPDKIHYTCLINGYCLKGEMQNAQQVFEEMLKANIEPD 174

Query: 361 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 420
            +TYN++     K+  V EV      M     +P  L    AI           A  ++N
Sbjct: 175 IVTYNILASGFCKSGLVMEVFDLLDRMADQGLEPNSLTYGIAIVGFCRGGNLSEAEVLFN 234

Query: 421 YILENGILPLEASANELLVG 440
            + E GI  +E   + ++ G
Sbjct: 235 VVEEKGIDHIEVMYSSMVCG 254



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 107/246 (43%), Gaps = 20/246 (8%)

Query: 136 VRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
           VRV ++  ++   + + + +  C  G    A     +M  H V  DV++ + L+S  C+ 
Sbjct: 269 VRVARQGNLVDHFSCSKLINDLCRVGNVQGASNVCKIMLEHNVVPDVISYSKLISIYCQN 328

Query: 196 ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
            +     L F + V++ +  D   + IL+ G+ K G ++EA + F +M       P+ V+
Sbjct: 329 GDMDKAHLWFHDMVQRGLSIDVIVYTILMNGYCKAGRLQEACQLFVQMT-NLGIKPD-VI 386

Query: 256 AYETFLI-----TLIRG-----KQVDEAL------KFLRVMKGENCFPTLKFFSNALDIL 299
           AY   L      TL +G     K+    L      K L  MK     P +  ++  +D  
Sbjct: 387 AYTVLLDGHLKETLQQGWEGIAKERRSFLLRANHNKLLSSMKDMQIEPDVPCYTVLIDGK 446

Query: 300 VKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFP 359
            K      A +L+D M+  G  L P+   Y A+I   C+  ++        +M+  G  P
Sbjct: 447 CKAEYLVEARELFDEMLQKG--LTPDAYAYTALINGYCSQGEISKAEDLLQEMIDKGIEP 504

Query: 360 DSLTYN 365
           D LT++
Sbjct: 505 DELTFS 510



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 112/275 (40%), Gaps = 46/275 (16%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSFD 171
           A+N+++D L K  R ++    +      G  S P    ++ +  SYC  G   +AV  ++
Sbjct: 2   AYNMVMDGLCKEMRLDEAEKLLENKARQG--SNPDVYGYSYLIQSYCKMGNLIKAVDHYE 59

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKE 230
            M  HG+E +   V+ LL    R+   TS  + +  + K   +  D   + I ++ + K 
Sbjct: 60  AMVSHGIETNCHIVSYLLQCF-RKLGMTSEVIAYFLKFKDSGLHLDKVIYNIAMDTYCKN 118

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           GN+ EA K   EM +     P+ +         LI G            +KGE       
Sbjct: 119 GNMNEAVKLLNEM-KCGGLTPDKI-----HYTCLING----------YCLKGE------- 155

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
                           +A Q+++ M  +  N+ P+++ YN +    C +  V  VF   D
Sbjct: 156 --------------MQNAQQVFEEM--LKANIEPDIVTYNILASGFCKSGLVMEVFDLLD 199

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 385
           +M   G  P+SLTY +      +   + E E  F+
Sbjct: 200 RMADQGLEPNSLTYGIAIVGFCRGGNLSEAEVLFN 234



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 46/219 (21%), Positives = 87/219 (39%), Gaps = 6/219 (2%)

Query: 255 LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314
           +AY   +  L +  ++DEA K L     +   P +  +S  +    K+ +   AV  ++ 
Sbjct: 1   MAYNMVMDGLCKEMRLDEAEKLLENKARQGSNPDVYGYSYLIQSYCKMGNLIKAVDHYEA 60

Query: 315 MVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN 374
           MV  G     +++ Y  ++           V  +F +    G   D + YN+  +   KN
Sbjct: 61  MVSHGIETNCHIVSY--LLQCFRKLGMTSEVIAYFLKFKDSGLHLDKVIYNIAMDTYCKN 118

Query: 375 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 434
             ++E  K  +EM      P  ++    I       E + A +++  +L+  I P   + 
Sbjct: 119 GNMNEAVKLLNEMKCGGLTPDKIHYTCLINGYCLKGEMQNAQQVFEEMLKANIEPDIVTY 178

Query: 435 NELLVGLRNLGRLSDV----RRFAEEMLNRRILIYEVTM 469
           N L  G    G + +V     R A++ L    L Y + +
Sbjct: 179 NILASGFCKSGLVMEVFDLLDRMADQGLEPNSLTYGIAI 217


>gi|359485438|ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 572

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/347 (22%), Positives = 141/347 (40%), Gaps = 37/347 (10%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  F+ +  S      Y   +  +  M   G+  +   +N L+++ C   N+   A   
Sbjct: 53  SIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFC-HLNRLGFAFSV 111

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L  + K+   P   +F  L+ G   EG + EA + F +M     + P+ VL Y T +  L
Sbjct: 112 LGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGE-GFQPD-VLTYGTLINGL 169

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFN--- 321
            +      A++FLR M+  NC PT+  +S  +D L K    T A+ L+  M+  G +   
Sbjct: 170 CKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFSDMLAKGISPNN 229

Query: 322 ------------------------------LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
                                         +MP+ + +N ++  LC    V       D 
Sbjct: 230 FTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMVVKAHYVVDV 289

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M+     PD +TYN + +       + +    F  M++    P+ ++  T I        
Sbjct: 290 MIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTLINGYCKIQI 349

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
            + A+ ++  + + G++P   + N L+ GL ++GRL D      EM+
Sbjct: 350 MDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMV 396



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/387 (20%), Positives = 168/387 (43%), Gaps = 5/387 (1%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F +  G G +     +  +++ L K G        +R M++     ++  +++I DS C 
Sbjct: 147 FDKMTGEGFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCK 206

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
             +  EA+  F  M   G+  +    +SL+  +C   +       F   + + + PD  +
Sbjct: 207 DRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLT 266

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           F  L++   KEG V +A+     M++  +  P+ V+ Y + +       ++ + +     
Sbjct: 267 FNTLVDALCKEGMVVKAHYVVDVMIQS-DLKPD-VVTYNSLMDGHCLRSEMGKTVNVFDT 324

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
           M  + C P++  ++  ++   K+     A+ L++ M   G  L+P+ + YN +I  LC+ 
Sbjct: 325 MVRKGCVPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQG--LIPDTVTYNTLIHGLCHV 382

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
             + +    F +MV +G  PD +TY ++F+ L KN R+ E       +      P     
Sbjct: 383 GRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIY 442

Query: 400 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
           +  +  +  A E E A ++++ +   G+ P   +   ++ GL   G L++  +   EM  
Sbjct: 443 SIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDE 502

Query: 460 RRILIYEVTMHKLKKAFYNESRSMRDI 486
                   T + + + F   + ++R I
Sbjct: 503 NGCSPNACTYNLITRGFLRNNETLRAI 529



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 152/353 (43%), Gaps = 12/353 (3%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S  TF ++    C  GK  EA+  FD M+  G + DV+   +L++ +C+  N TS A+ F
Sbjct: 123 STATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKVGN-TSTAIRF 181

Query: 206 LNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L  + ++   P    ++ +++   K+  + EA   F +M+ +   +P +   Y + +  L
Sbjct: 182 LRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFSDMLAK-GISPNN-FTYSSLIHGL 239

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
                  EA++    M      P    F+  +D L K      A  + D+M  I  +L P
Sbjct: 240 CILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMVVKAHYVVDVM--IQSDLKP 297

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           +++ YN+++   C   ++      FD MV  G  P  ++Y  +     K + + +    F
Sbjct: 298 DVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTLINGYCKIQIMDKAMGLF 357

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
            EM +    P  +   T I  L        AI +++ ++  G +P   +   L   L   
Sbjct: 358 EEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKN 417

Query: 445 GRLSDVRRFAEEM----LNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERR 493
            RL++     + +    L+  I IY + M  + +A   E  + RD+F  L  +
Sbjct: 418 HRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRA--GELEAARDLFSKLSSK 468



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 129/295 (43%), Gaps = 5/295 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N +VD L K G   +    V VM + D    + T+ S+ D +C   +  + V  FD M
Sbjct: 266 TFNTLVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTM 325

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G    V++  +L++  C+ +        F    ++ + PD  ++  L+ G    G +
Sbjct: 326 VRKGCVPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRL 385

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            +A   F EMV  +   P+ ++ Y      L +  ++ EA+  L+V++G N  P +  +S
Sbjct: 386 RDAIALFHEMVV-YGQIPD-LVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYS 443

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             +D + +  +   A  L+  +   G  L P++  Y  +I  LC    +    + F +M 
Sbjct: 444 IVMDGMCRAGELEAARDLFSKLSSKG--LHPDVRTYTIMINGLCQQGLLAEASKLFGEMD 501

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
            +G  P++ TYN+I    ++N       + F EM+   +          + ML D
Sbjct: 502 ENGCSPNACTYNLITRGFLRNNETLRAIQLFQEMLSRGFSIDVSTTTLLVEMLSD 556



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 124/291 (42%), Gaps = 5/291 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF ++ D+ C  G   +A    DVM    ++ DVV  NSL+   C +         F   
Sbjct: 266 TFNTLVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTM 325

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           V+K   P   S+  L+ G+ K   +++A   F EM ++    P+ V  Y T +  L    
Sbjct: 326 VRKGCVPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQ-GLIPDTV-TYNTLIHGLCHVG 383

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           ++ +A+     M      P L  +    D L K +    A+ L  ++ G   NL P++ +
Sbjct: 384 RLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGT--NLDPDIHI 441

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           Y+ V+  +C   +++     F ++   G  PD  TY ++   L +   + E  K F EM 
Sbjct: 442 YSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMD 501

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 439
           +N   P            L  +E   AI+++  +L  G   ++ S   LLV
Sbjct: 502 ENGCSPNACTYNLITRGFLRNNETLRAIQLFQEMLSRG-FSIDVSTTTLLV 551



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 96/234 (41%), Gaps = 10/234 (4%)

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKG----ENCFPTLKFFSNALDILVKLNDST 306
           P  ++ +   L ++ R K     L   + M       N + TL    N+      LN   
Sbjct: 51  PPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTY-TLNILINSF---CHLNRLG 106

Query: 307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM 366
            A  +   ++ +G+   P+   +  +I  LC    +    + FD+M   G  PD LTY  
Sbjct: 107 FAFSVLGDILKLGYQ--PSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGT 164

Query: 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 426
           +   L K        +F   M +   +PT +  +T I  L    +   A+ +++ +L  G
Sbjct: 165 LINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFSDMLAKG 224

Query: 427 ILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 480
           I P   + + L+ GL  LG   +  R    M++R+I+  ++T + L  A   E 
Sbjct: 225 ISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEG 278


>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
 gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
 gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
 gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 98/436 (22%), Positives = 183/436 (41%), Gaps = 20/436 (4%)

Query: 51  SSARIIC-----EILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA 105
           S+AR+ C     + LA AS +  E+      +       HE+  L       A+D F   
Sbjct: 17  SAARLFCTRSIRDTLAKASGESCEAGFGGESLKLQSGF-HEIKGLE-----DAIDLFSDM 70

Query: 106 GRGQRL-SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKY 163
            R + L S   +  ++ V+ +  R + + +  + M+   +   + +F  +   +C   K 
Sbjct: 71  LRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKL 130

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAI 222
             A+ +F  ++  G+  DVV  N+LL  +C  E++ S AL   +++ +    P+  +F  
Sbjct: 131 PFALSTFGKITKLGLHPDVVTFNTLLHGLC-VEDRVSEALNLFHQMFETTCRPNVVTFTT 189

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+ G  +EG + EA      M+E     P  +  Y T +  + +      AL  LR M+ 
Sbjct: 190 LMNGLCREGRIVEAVALLDRMMED-GLQPTQI-TYGTIVDGMCKKGDTVSALNLLRKMEE 247

Query: 283 -ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
             +  P +  +S  +D L K    + A  L+  M   G  + P+L  YN++I   C++  
Sbjct: 248 VSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKG--IFPDLFTYNSMIVGFCSSGR 305

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
             +  +   +M+     PD +TYN +    +K  +  E E+ + EM+     P  +  ++
Sbjct: 306 WSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSS 365

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461
            I      +  + A  ++  +   G  P   + N L+ G     R+ D      EM    
Sbjct: 366 MIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETG 425

Query: 462 ILIYEVTMHKLKKAFY 477
           ++    T + L   FY
Sbjct: 426 LVADTTTYNTLIHGFY 441



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/387 (19%), Positives = 160/387 (41%), Gaps = 20/387 (5%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +N M+     +GR+      ++ M E  +   + T+ ++ +++   GK+ EA   +D 
Sbjct: 291 FTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDE 350

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M   G+  + +  +S++   C+Q    +    F     K   P+  +F  L++G+     
Sbjct: 351 MLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKR 410

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG----KQVDEALKFLRVMKGENCFPT 288
           +++  +   EM E        ++A  T   TLI G      ++ AL  L+ M      P 
Sbjct: 411 IDDGMELLHEMTE------TGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPD 464

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIM--------VGIGFN-LMPNLIMYNAVIGLLCNN 339
           +      LD L        A++++ +M            FN + P++  YN +I  L N 
Sbjct: 465 IVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINE 524

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
                    +++M   G  PD++TY+ + + L K  R+ E  + F  M    + P  +  
Sbjct: 525 GKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTF 584

Query: 400 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
            T I     A   +  +E++  +   GI+    +   L+ G R +G ++      +EM++
Sbjct: 585 TTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMIS 644

Query: 460 RRILIYEVTMHKLKKAFYNESRSMRDI 486
             +    +T+  +    +++    R +
Sbjct: 645 SGVYPDTITIRNMLTGLWSKEELKRAV 671



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 119/302 (39%), Gaps = 42/302 (13%)

Query: 182 VVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFG 241
           VV    L+  + R E        +    +K +  D  SF IL++ +     +  A  TFG
Sbjct: 79  VVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFG 138

Query: 242 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
           + + +   +P+ V+ + T L  L    +V EAL     M    C P +  F+  ++ L +
Sbjct: 139 K-ITKLGLHPD-VVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCR 196

Query: 302 LNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM--VFHGAFP 359
                 AV L D M+  G  L P  I Y  ++  +C   D  +      +M  V H   P
Sbjct: 197 EGRIVEAVALLDRMMEDG--LQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSH-IIP 253

Query: 360 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 419
           + + Y+ I + L K+ R  + +  F EM                                
Sbjct: 254 NVVIYSAIIDSLCKDGRHSDAQNLFTEM-------------------------------- 281

Query: 420 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 479
               E GI P   + N ++VG  + GR SD  +  +EML R+I    VT + L  AF  E
Sbjct: 282 ---QEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKE 338

Query: 480 SR 481
            +
Sbjct: 339 GK 340


>gi|297839881|ref|XP_002887822.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333663|gb|EFH64081.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 407

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 95/392 (24%), Positives = 172/392 (43%), Gaps = 31/392 (7%)

Query: 84  VHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE 141
           V E L    +    A++FF W  +  G R +   +N M+D+LGK   FE  W  +  M  
Sbjct: 10  VCEALSCYINDWQKALEFFNWVEKESGFRHTTETFNRMIDILGKYFEFETCWALINRMIG 69

Query: 142 DGVLSLP---TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198
           +   SLP   TF  +F  Y  A    EA+ ++D +    +  D    N L+ A+C  E++
Sbjct: 70  NPE-SLPNHVTFRIVFKRYVTAHLVQEAIDAYDKLDDFNLRDDTSFYN-LVDALC--EHK 125

Query: 199 TSRALEFLNRVKKIVDPDGDSFA------ILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
                E L   K ++   G S +      ++L GW K G   +  + + +M    E  P+
Sbjct: 126 HVVEAEELCFGKNVI-AHGFSVSNTKIHNLILRGWSKLGWWGKCKEYWDKM--DTEGVPK 182

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
            + +Y  ++  + +  +  +A+K  + MK       +  ++  +  +         ++++
Sbjct: 183 DLFSYSIYMDIMCKSGKPWKAVKLYKEMKSRRIKLDVVAYNTVIRAIGASQGVEFGIRVF 242

Query: 313 DIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 372
             M   G    PN+  +N +I LLC +  + + +R  D+M   G  PDS++Y  +F  L 
Sbjct: 243 REMRERGCE--PNVATHNTIIKLLCEDGRMRDAYRMLDEMPKKGCQPDSISYMCLFSRL- 299

Query: 373 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP----EIAIEIWNYILENGIL 428
             ++  E+   F  MI++  +P          ML+   E     +  + +W  + E+G  
Sbjct: 300 --EKPSEILSLFGRMIRSGVRPK----MDTYVMLMRKFERWGFLQPVLYVWKTMKESGDT 353

Query: 429 PLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           P  A+ N ++  L   G L   R + EEM+ R
Sbjct: 354 PDSAAYNAVIDALIQKGMLDMAREYEEEMIER 385


>gi|297850744|ref|XP_002893253.1| hypothetical protein ARALYDRAFT_313173 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297339095|gb|EFH69512.1| hypothetical protein ARALYDRAFT_313173 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1147

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 90/428 (21%), Positives = 177/428 (41%), Gaps = 22/428 (5%)

Query: 35  PTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDS 94
           PT   F T LD+ + +     + +I       +IE +          ++ + +L   +  
Sbjct: 272 PTVITFNTMLDSCFKAGDLERVDKIWLEMKRRNIEFS----------EVTYNILINGFSK 321

Query: 95  PSSAVDFFRWAGRGQR----LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTF 150
                +  R+ G  QR    ++PY++N +++   K G F++ W     M   G+    + 
Sbjct: 322 SGKMEEARRFHGDMQRSGFPVTPYSFNPLIEGYCKQGLFDEAWGVTDEMLNAGIYPTTST 381

Query: 151 ASIF-DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
            +I+  + C  G+ D+A      M+      DVV+ N+L+    +       +L F +  
Sbjct: 382 YNIYIRALCEFGRIDDARELLSSMAA----PDVVSYNTLMHGYIKMRKFVEASLLFDDLK 437

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
              ++P   ++  L++G  + GN+E A +   EM  +  + P+ V+ Y T L   ++   
Sbjct: 438 AGNINPSIVTYNTLIDGLCESGNLEGAQRLKEEMTSQLIY-PD-VITYTTLLKGFVKNGN 495

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY 329
           +  A +    M  +   P    ++      ++L DS  A +L + MV    +  P+L +Y
Sbjct: 496 LSMATEIYDEMLRKGIKPDGYAYTTRTVGELRLGDSEKAFRLHEEMVAEDHH-APDLTIY 554

Query: 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389
           N  I  LC   +++    F  ++   G  PD +TY  +    ++  R       + EM+ 
Sbjct: 555 NVRIDGLCKVGNLEKAIEFQRKIFRVGLVPDHVTYTTVIRGYLEKGRFKMARDLYDEMLS 614

Query: 390 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 449
               P+ +     I     A   E A +    + + G+ P   + N LL G+   G + +
Sbjct: 615 KRLSPSVITYFVLIHGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLHGMCKAGNIDE 674

Query: 450 VRRFAEEM 457
             R+  +M
Sbjct: 675 AYRYLCKM 682



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 96/426 (22%), Positives = 182/426 (42%), Gaps = 29/426 (6%)

Query: 65  SDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFR----WAGRGQR---LSPYAWN 117
           + ++   +   GI+PT    + +L    DS   A D  R    W    +R    S   +N
Sbjct: 258 AQEVYETMVMHGIMPTVITFNTML----DSCFKAGDLERVDKIWLEMKRRNIEFSEVTYN 313

Query: 118 LMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMSMH 176
           ++++   K+G+ E+       M+  G    P +F  + + YC  G +DEA    D M   
Sbjct: 314 ILINGFSKSGKMEEARRFHGDMQRSGFPVTPYSFNPLIEGYCKQGLFDEAWGVTDEMLNA 373

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA 236
           G+       N  + A+C +  +   A E L+    +  PD  S+  L+ G+ K     EA
Sbjct: 374 GIYPTTSTYNIYIRALC-EFGRIDDARELLS---SMAAPDVVSYNTLMHGYIKMRKFVEA 429

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
           +  F ++ +    NP  ++ Y T +  L     ++ A +    M  +  +P +  ++  L
Sbjct: 430 SLLFDDL-KAGNINPS-IVTYNTLIDGLCESGNLEGAQRLKEEMTSQLIYPDVITYTTLL 487

Query: 297 DILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA-VIGLLCNNDDVDNVFRFFDQMVF- 354
              VK  + + A +++D M+  G  + P+   Y    +G L    D +  FR  ++MV  
Sbjct: 488 KGFVKNGNLSMATEIYDEMLRKG--IKPDGYAYTTRTVGEL-RLGDSEKAFRLHEEMVAE 544

Query: 355 -HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
            H A PD   YN+  + L K   + +  +F  ++ +    P  +   T I   L+    +
Sbjct: 545 DHHA-PDLTIYNVRIDGLCKVGNLEKAIEFQRKIFRVGLVPDHVTYTTVIRGYLEKGRFK 603

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR----RILIYEVTM 469
           +A ++++ +L   + P   +   L+ G    GRL    +++ EM  R     ++ +   +
Sbjct: 604 MARDLYDEMLSKRLSPSVITYFVLIHGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALL 663

Query: 470 HKLKKA 475
           H + KA
Sbjct: 664 HGMCKA 669



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 93/409 (22%), Positives = 161/409 (39%), Gaps = 37/409 (9%)

Query: 77  IIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQ--RLSPYAWNLMVDVLGKNGRFEQMWN 134
           ++  PDL+  VL +    P  A  FF W  R    + S  A+  M+++L +N   + M  
Sbjct: 117 LLTDPDLLIRVLNMIRVKPEIAFRFFNWIQRQSDVKQSRQAFAAMLEILAEN---DLMSE 173

Query: 135 AVRVMKEDGVLSLPTFASI-----FDS-------------YCGAGKYDEAVMSFDVMSMH 176
           A  V +    L +     +     FD              Y      ++ ++SF+ M   
Sbjct: 174 AYLVAERSINLGMHEIDDLLIDGNFDKLVALKLLDLLLWVYTKKSMAEKCLLSFEKMIRK 233

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAILLEGWEKEGNVEE 235
           G    V   N +L  + R     ++A E +   V   + P   +F  +L+   K G++E 
Sbjct: 234 GFLPSVRNCNIVLR-VLRDSRMMNKAQEVYETMVMHGIMPTVITFNTMLDSCFKAGDLER 292

Query: 236 ANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF-FS 293
            +K + EM  R  E++    + Y   +    +  +++EA +F   M+  + FP   + F+
Sbjct: 293 VDKIWLEMKRRNIEFSE---VTYNILINGFSKSGKMEEARRFHGDMQ-RSGFPVTPYSFN 348

Query: 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             ++   K      A  + D M+  G  + P    YN  I  LC    +D+       M 
Sbjct: 349 PLIEGYCKQGLFDEAWGVTDEMLNAG--IYPTTSTYNIYIRALCEFGRIDDARELLSSM- 405

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
              A PD ++YN +    IK ++  E    F ++      P+ +   T I  L ++   E
Sbjct: 406 ---AAPDVVSYNTLMHGYIKMRKFVEASLLFDDLKAGNINPSIVTYNTLIDGLCESGNLE 462

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
            A  +   +    I P   +   LL G    G LS      +EML + I
Sbjct: 463 GAQRLKEEMTSQLIYPDVITYTTLLKGFVKNGNLSMATEIYDEMLRKGI 511



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/323 (18%), Positives = 127/323 (39%), Gaps = 35/323 (10%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+ T+ ++ D  C +G  + A    + M+   +  DV+   +LL    +  N +     +
Sbjct: 444 SIVTYNTLIDGLCESGNLEGAQRLKEEMTSQLIYPDVITYTTLLKGFVKNGNLSMATEIY 503

Query: 206 LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
              ++K + PDG ++     G  + G+ E+A +   EMV      P+ +  Y   +  L 
Sbjct: 504 DEMLRKGIKPDGYAYTTRTVGELRLGDSEKAFRLHEEMVAEDHHAPD-LTIYNVRIDGLC 562

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFN---- 321
           +   +++A++F R +      P    ++  +   ++      A  L+D M+    +    
Sbjct: 563 KVGNLEKAIEFQRKIFRVGLVPDHVTYTTVIRGYLEKGRFKMARDLYDEMLSKRLSPSVI 622

Query: 322 -----------------------------LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
                                        + PN++ +NA++  +C   ++D  +R+  +M
Sbjct: 623 TYFVLIHGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLHGMCKAGNIDEAYRYLCKM 682

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
              G  P+  +Y ++        +  EV K + EM+  E +P       A+   L+ D  
Sbjct: 683 EEEGISPNKYSYTILISKHCDLDKWEEVVKLYKEMLDKEIEPDGYT-HRALFKHLEKDHE 741

Query: 413 EIAIEIWNYILENGILPLEASAN 435
            +A++      E    P  +S N
Sbjct: 742 SMALDSSGKQPEQQQQPRGSSGN 764



 Score = 43.9 bits (102), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 3/125 (2%)

Query: 109 QRLSPYAWNLMVDVLG--KNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +RLSP      V + G  K GR EQ +     MK+ GV  ++ T  ++    C AG  DE
Sbjct: 615 KRLSPSVITYFVLIHGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLHGMCKAGNIDE 674

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A      M   G+  +  +   L+S  C  +        +   + K ++PDG +   L +
Sbjct: 675 AYRYLCKMEEEGISPNKYSYTILISKHCDLDKWEEVVKLYKEMLDKEIEPDGYTHRALFK 734

Query: 226 GWEKE 230
             EK+
Sbjct: 735 HLEKD 739



 Score = 41.2 bits (95), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 44/93 (47%)

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
           F +MI+  + P+  NC   + +L D+     A E++  ++ +GI+P   + N +L     
Sbjct: 227 FEKMIRKGFLPSVRNCNIVLRVLRDSRMMNKAQEVYETMVMHGIMPTVITFNTMLDSCFK 286

Query: 444 LGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
            G L  V +   EM  R I   EVT + L   F
Sbjct: 287 AGDLERVDKIWLEMKRRNIEFSEVTYNILINGF 319


>gi|223635763|sp|Q9LER0.2|PP381_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g14770, mitochondrial; Flags: Precursor
          Length = 940

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 115/513 (22%), Positives = 205/513 (39%), Gaps = 69/513 (13%)

Query: 12  IKNKIIPSSSSTTTSPTSHNPHRPTRPRFPTHLDAPYISSSARII--CEILAHASSDDIE 69
           IK   IP S  T+ S T      P      T +      +  R+   CE L  A+     
Sbjct: 27  IKRPQIPESEETSLSITQRR-FDPDLAPIKTRVYVSLFHTLFRLYLSCERLYGAART--L 83

Query: 70  SALACTGIIPTP----DLVHE--VLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVL 123
           SA+   G++P       L+H+  V  L +D  S  + + +    G     +A N+++   
Sbjct: 84  SAMCTFGVVPDSRLWNSLIHQFNVNGLVHDQVS--LIYSKMIACGVSPDVFALNVLIHSF 141

Query: 124 GKNGRFEQMWNAVR--VMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD 181
            K GR     + +R  V+  D V    T+ ++    C  G  DEA      M   G+  D
Sbjct: 142 CKVGRLSFAISLLRNRVISIDTV----TYNTVISGLCEHGLADEAYQFLSEMVKMGILPD 197

Query: 182 VVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD----SFAILLEGWEKEGNVEEAN 237
            V+ N+L+   C+  N          R K +VD   +    +  ILL  +     +EEA 
Sbjct: 198 TVSYNTLIDGFCKVGN--------FVRAKALVDEISELNLITHTILLSSYYNLHAIEEA- 248

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297
             + +MV    ++P+ V+ + + +  L +G +V E    LR M+  + +P    ++  +D
Sbjct: 249 --YRDMVMS-GFDPD-VVTFSSIINRLCKGGKVLEGGLLLREMEEMSVYPNHVTYTTLVD 304

Query: 298 ILVKLNDSTHAVQLWDIMVGIGF---------------------------------NLMP 324
            L K N   HA+ L+  MV  G                                  N +P
Sbjct: 305 SLFKANIYRHALALYSQMVVRGIPVDLVVYTVLMDGLFKAGDLREAEKTFKMLLEDNQVP 364

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
           N++ Y A++  LC   D+ +      QM+     P+ +TY+ +    +K   + E     
Sbjct: 365 NVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVIPNVVTYSSMINGYVKKGMLEEAVSLL 424

Query: 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
            +M      P      T I  L  A + E+AIE+   +   G+       + L+  L+ +
Sbjct: 425 RKMEDQNVVPNGFTYGTVIDGLFKAGKEEMAIELSKEMRLIGVEENNYILDALVNHLKRI 484

Query: 445 GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFY 477
           GR+ +V+   ++M+++ + + ++    L   F+
Sbjct: 485 GRIKEVKGLVKDMVSKGVTLDQINYTSLIDVFF 517



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 86/386 (22%), Positives = 161/386 (41%), Gaps = 49/386 (12%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVM 173
            ++ M++   K G  E+  + +R M++  V+    T+ ++ D    AGK + A+     M
Sbjct: 403 TYSSMINGYVKKGMLEEAVSLLRKMEDQNVVPNGFTYGTVIDGLFKAGKEEMAIELSKEM 462

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDP----DGDSFAILLEGWEK 229
            + GVE++    N +L A+     +  R  E    VK +V      D  ++  L++ + K
Sbjct: 463 RLIGVEEN----NYILDALVNHLKRIGRIKEVKGLVKDMVSKGVTLDQINYTSLIDVFFK 518

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
            G+ E A     EM ER    P  V++Y   +  +++  +V     + + M+ +   P +
Sbjct: 519 GGDEEAALAWAEEMQER--GMPWDVVSYNVLISGMLKFGKVGADWAY-KGMREKGIEPDI 575

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349
             F+  ++   K  DS   ++LWD M   G    P+L+  N V+G+LC N  ++      
Sbjct: 576 ATFNIMMNSQRKQGDSEGILKLWDKMKSCGIK--PSLMSCNIVVGMLCENGKMEEAIHIL 633

Query: 350 DQMVFHGAFPDSLTYNMIFECLIKNKRVHEV----EKFFHEMIKNEWQPTPLNCATAITM 405
           +QM+     P+  TY +  +   K+KR   +    E      IK   Q      AT   +
Sbjct: 634 NQMMLMEIHPNLTTYRIFLDTSSKHKRADAIFKTHETLLSYGIKLSRQVYNTLIATLCKL 693

Query: 406 LLDADEPEI-------------------------------AIEIWNYILENGILPLEASA 434
            +      +                               A+  ++ ++E GI P  A+ 
Sbjct: 694 GMTKKAAMVMGDMEARGFIPDTVTFNSLMHGYFVGSHVRKALSTYSVMMEAGISPNVATY 753

Query: 435 NELLVGLRNLGRLSDVRRFAEEMLNR 460
           N ++ GL + G + +V ++  EM +R
Sbjct: 754 NTIIRGLSDAGLIKEVDKWLSEMKSR 779



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 78/383 (20%), Positives = 152/383 (39%), Gaps = 37/383 (9%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y  + +V+ L + GR +++   V+ M   GV L    + S+ D +   G  + A+   + 
Sbjct: 472 YILDALVNHLKRIGRIKEVKGLVKDMVSKGVTLDQINYTSLIDVFFKGGDEEAALAWAEE 531

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M   G+  DVV+ N L+S + +   +      +    +K ++PD  +F I++    K+G+
Sbjct: 532 MQERGMPWDVVSYNVLISGMLKF-GKVGADWAYKGMREKGIEPDIATFNIMMNSQRKQGD 590

Query: 233 VE-------------------EANKTFGEMVERFEWNPE-HVL-------------AYET 259
            E                     N   G + E  +     H+L              Y  
Sbjct: 591 SEGILKLWDKMKSCGIKPSLMSCNIVVGMLCENGKMEEAIHILNQMMLMEIHPNLTTYRI 650

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG 319
           FL T  + K+ D   K    +       + + ++  +  L KL  +  A  +   M   G
Sbjct: 651 FLDTSSKHKRADAIFKTHETLLSYGIKLSRQVYNTLIATLCKLGMTKKAAMVMGDMEARG 710

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379
           F  +P+ + +N+++        V      +  M+  G  P+  TYN I   L     + E
Sbjct: 711 F--IPDTVTFNSLMHGYFVGSHVRKALSTYSVMMEAGISPNVATYNTIIRGLSDAGLIKE 768

Query: 380 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 439
           V+K+  EM     +P        I+        + ++ I+  ++ +G++P  ++ N L+ 
Sbjct: 769 VDKWLSEMKSRGMRPDDFTYNALISGQAKIGNMKGSMTIYCEMIADGLVPKTSTYNVLIS 828

Query: 440 GLRNLGRLSDVRRFAEEMLNRRI 462
              N+G++   R   +EM  R +
Sbjct: 829 EFANVGKMLQARELLKEMGKRGV 851



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 76/385 (19%), Positives = 156/385 (40%), Gaps = 22/385 (5%)

Query: 82  DLVHEVLQLSYDSPSSAVDFFRWAG--------------RGQRLSPYAWNLMVDVLGKNG 127
           D+V + + L   + +S +D F   G              RG      ++N+++  + K G
Sbjct: 496 DMVSKGVTLDQINYTSLIDVFFKGGDEEAALAWAEEMQERGMPWDVVSYNVLISGMLKFG 555

Query: 128 RFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN 186
           +    W A + M+E G+   + TF  + +S    G  +  +  +D M   G++  +++ N
Sbjct: 556 KVGADW-AYKGMREKGIEPDIATFNIMMNSQRKQGDSEGILKLWDKMKSCGIKPSLMSCN 614

Query: 187 SLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245
            ++  +C +  +   A+  LN++  + + P+  ++ I L+   K    +   KT   ++ 
Sbjct: 615 IVVGMLC-ENGKMEEAIHILNQMMLMEIHPNLTTYRIFLDTSSKHKRADAIFKTHETLLS 673

Query: 246 RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS 305
                   V  Y T + TL +     +A   +  M+     P    F++ +      +  
Sbjct: 674 YGIKLSRQV--YNTLIATLCKLGMTKKAAMVMGDMEARGFIPDTVTFNSLMHGYFVGSHV 731

Query: 306 THAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYN 365
             A+  + +M+  G +  PN+  YN +I  L +   +  V ++  +M   G  PD  TYN
Sbjct: 732 RKALSTYSVMMEAGIS--PNVATYNTIIRGLSDAGLIKEVDKWLSEMKSRGMRPDDFTYN 789

Query: 366 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 425
            +     K   +      + EMI +   P        I+   +  +   A E+   + + 
Sbjct: 790 ALISGQAKIGNMKGSMTIYCEMIADGLVPKTSTYNVLISEFANVGKMLQARELLKEMGKR 849

Query: 426 GILPLEASANELLVGLRNLGRLSDV 450
           G+ P  ++   ++ GL  L    DV
Sbjct: 850 GVSPNTSTYCTMISGLCKLCTHPDV 874


>gi|122236160|sp|Q0WP85.1|PP150_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g13420, mitochondrial; Flags: Precursor
 gi|110738270|dbj|BAF01064.1| hypothetical protein [Arabidopsis thaliana]
          Length = 509

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 109/461 (23%), Positives = 191/461 (41%), Gaps = 28/461 (6%)

Query: 50  SSSARIICEILA--HASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR 107
           SS A +I ++L   H     +ES+L   GI  TP+L+H+ L     +   A+ FF++   
Sbjct: 38  SSDAELISQMLITNHNPFHFMESSLQLNGISLTPNLIHQTLLRLRHNSKIALSFFQYLRS 97

Query: 108 --GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDE 165
                 +P ++NL++D+LG+  +F+ +   +  M +    S  TF  +      AG   +
Sbjct: 98  LPSPSTTPTSFNLIIDILGRVRQFDVVRQLIVEMDQT---SPETFLILVKRLIAAGLTRQ 154

Query: 166 AVMSFDVMS--MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
           AV +FD     +      +V    LL  +C+    T  A+   N  K+    D   + IL
Sbjct: 155 AVRAFDDAPCFLENRRFRLVEFGFLLDTLCKY-GYTKMAVGVFNERKEEFGSDEKVYTIL 213

Query: 224 LEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLR-VMK 281
           + GW K   ++ A K   EM+E   E N   V+ Y   L  + R   +    +F R V  
Sbjct: 214 IAGWCKLRRIDMAEKFLVEMIESGIEPN---VVTYNVLLNGICRTASLHPEERFERNVRN 270

Query: 282 GENCF---------PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAV 332
            E  F         P +  FS  L +  + + +   +    +M   G +  P +  Y +V
Sbjct: 271 AEKVFDEMRQRGIEPDVTSFSIVLHMYSRAHKAELTLDKMKLMKAKGIS--PTIETYTSV 328

Query: 333 IGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 392
           +  LC+   ++      + MV  G  P S TYN  F+     K  +     + +M     
Sbjct: 329 VKCLCSCGRLEEAEELLETMVESGISPSSATYNCFFKEYKGRKDANGAMNLYRKMKNGLC 388

Query: 393 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 452
           +P+       +   ++  + E   EIW+ +  +   P   S   L+ GL +  +  +   
Sbjct: 389 KPSTQTYNVLLGTFINLGKMETVKEIWDDLKASETGPDLDSYTSLVHGLCSKEKWKEACG 448

Query: 453 FAEEMLNRRILIYEVTMHKLKKAFY--NESRSMRDIFDSLE 491
           +  EM+ R  L  ++T   L K     N+ R+ R +   L+
Sbjct: 449 YFVEMIERGFLPQKLTFETLYKGLIQSNKMRTWRRLKKKLD 489


>gi|357138611|ref|XP_003570884.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Brachypodium distachyon]
          Length = 864

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 156/360 (43%), Gaps = 24/360 (6%)

Query: 128 RFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS 187
           R  +  +A+ V+     ++L    ++   +C  G+ DEA    D M   G+  +VV  N 
Sbjct: 186 RAGRSADALAVLDAMPEMNLVVCNTVVAGFCREGRVDEAERLVDRMRAQGLAPNVVTFNG 245

Query: 188 LLSAICRQENQTSRALEFLNRVKK-----IVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
            +SA+C+   +   A    N +++     +  PD  +F ++L G+   G V+EA      
Sbjct: 246 RISALCKA-GRVLEAYRIFNDMQEAWEQGLPRPDQVTFDVMLSGFCDAGMVDEATVLVDI 304

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
           M  R       V +Y  +L  L++  +V EA + L  M  E   P    ++  +D L K 
Sbjct: 305 M--RCGGFLRKVESYNRWLSGLVKNGRVGEAQELLSEMAHEGVQPNSYTYNIIVDGLCKE 362

Query: 303 NDSTHAVQLWD-IMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS 361
             +    ++ D +  G+   + P+++ Y +++   C+  +     R  D+M   G  P+ 
Sbjct: 363 GKAFDVRRVEDFVRSGV---MTPDVVTYTSLLHAYCSKGNTTAANRILDEMAQKGCAPNL 419

Query: 362 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 421
            TYN++ + L+K  R  EVE+    M +  +     +C   I  L    + E+A++I   
Sbjct: 420 FTYNVLLQSLLKAGRTTEVERLLERMSEKGYSLDTASCNIIIDGLCRNSKLEMAMDI--- 476

Query: 422 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
                   ++   NE  + LR LG  S V   ++  +++  L   +T   L  A   E R
Sbjct: 477 --------VDGMWNEGRLALRRLGN-SFVSLVSDSSISKSCLPDRITYSTLMNALCKEGR 527



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 93/401 (23%), Positives = 160/401 (39%), Gaps = 36/401 (8%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-----TFASIFDSYCG 159
           R Q L+P    +N  +  L K GR  + +     M+E     LP     TF  +   +C 
Sbjct: 232 RAQGLAPNVVTFNGRISALCKAGRVLEAYRIFNDMQEAWEQGLPRPDQVTFDVMLSGFCD 291

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGD 218
           AG  DEA +  D+M   G  + V + N  LS + +   +   A E L+ +  + V P+  
Sbjct: 292 AGMVDEATVLVDIMRCGGFLRKVESYNRWLSGLVKN-GRVGEAQELLSEMAHEGVQPNSY 350

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++ I+++G  KEG   +  +   + V      P+ V+ Y + L           A + L 
Sbjct: 351 TYNIIVDGLCKEGKAFDVRRV-EDFVRSGVMTPD-VVTYTSLLHAYCSKGNTTAANRILD 408

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338
            M  + C P L  ++  L  L+K   +T   +L + M   G++L  +    N +I  LC 
Sbjct: 409 EMAQKGCAPNLFTYNVLLQSLLKAGRTTEVERLLERMSEKGYSL--DTASCNIIIDGLCR 466

Query: 339 NDDVDNVFRFFDQM-----------------------VFHGAFPDSLTYNMIFECLIKNK 375
           N  ++      D M                       +     PD +TY+ +   L K  
Sbjct: 467 NSKLEMAMDIVDGMWNEGRLALRRLGNSFVSLVSDSSISKSCLPDRITYSTLMNALCKEG 526

Query: 376 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 435
           R  E +K   EMI  +  P  +   T I       +  +AI++   + +    P   S N
Sbjct: 527 RFDEAKKKLVEMIGKDISPDSVIYDTFIHGYCMHGKTSLAIKVLRDMEKRSCNPSTRSYN 586

Query: 436 ELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
            L+ G +   +  ++ +   EM  + I    +T + L K+F
Sbjct: 587 LLIWGFQEKQKSDEILKLMSEMKEKGISSNVMTYNSLIKSF 627



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 75/358 (20%), Positives = 139/358 (38%), Gaps = 71/358 (19%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGR---FEQMWNAVR--VMKEDGVLSLPTFASIFDSYCG 159
           A  G + + Y +N++VD L K G+     ++ + VR  VM  D V    T+ S+  +YC 
Sbjct: 341 AHEGVQPNSYTYNIIVDGLCKEGKAFDVRRVEDFVRSGVMTPDVV----TYTSLLHAYCS 396

Query: 160 -----------------------------------AGKYDEAVMSFDVMSMHGVEQDVVA 184
                                              AG+  E     + MS  G   D  +
Sbjct: 397 KGNTTAANRILDEMAQKGCAPNLFTYNVLLQSLLKAGRTTEVERLLERMSEKGYSLDTAS 456

Query: 185 VNSLLSAICRQE-------------NQTSRALEFL----------NRVKKIVDPDGDSFA 221
            N ++  +CR               N+   AL  L          + + K   PD  +++
Sbjct: 457 CNIIIDGLCRNSKLEMAMDIVDGMWNEGRLALRRLGNSFVSLVSDSSISKSCLPDRITYS 516

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L+    KEG  +EA K   EM+ + + +P+ V+ Y+TF+       +   A+K LR M+
Sbjct: 517 TLMNALCKEGRFDEAKKKLVEMIGK-DISPDSVI-YDTFIHGYCMHGKTSLAIKVLRDME 574

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
             +C P+ + ++  +    +   S   ++L   M   G +   N++ YN++I   C    
Sbjct: 575 KRSCNPSTRSYNLLIWGFQEKQKSDEILKLMSEMKEKGIS--SNVMTYNSLIKSFCGRGM 632

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
           V+      D+M+ +   P+  ++ ++ +   K       ++ F   +    Q   L C
Sbjct: 633 VNKAMPLLDEMLQNEIVPNVTSFGLLIKAFCKTADFSAAQRVFDVALSTCGQKEVLYC 690



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 89/407 (21%), Positives = 156/407 (38%), Gaps = 26/407 (6%)

Query: 78  IPTPDLVHEVLQLS-------YDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFE 130
           +P PD V   + LS        D  +  VD  R  G  +++  Y  N  +  L KNGR  
Sbjct: 274 LPRPDQVTFDVMLSGFCDAGMVDEATVLVDIMRCGGFLRKVESY--NRWLSGLVKNGRVG 331

Query: 131 QMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLL 189
           +    +  M  +GV  +  T+  I D  C  GK  +     D +    +  DVV   SLL
Sbjct: 332 EAQELLSEMAHEGVQPNSYTYNIIVDGLCKEGKAFDVRRVEDFVRSGVMTPDVVTYTSLL 391

Query: 190 SAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW 249
            A C + N T+         +K   P+  ++ +LL+   K G   E  +    M E+   
Sbjct: 392 HAYCSKGNTTAANRILDEMAQKGCAPNLFTYNVLLQSLLKAGRTTEVERLLERMSEK--G 449

Query: 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV 309
                 +    +  L R  +++ A+  +  M  E     L+   N+   LV  +DS+   
Sbjct: 450 YSLDTASCNIIIDGLCRNSKLEMAMDIVDGMWNEGRL-ALRRLGNSFVSLV--SDSS--- 503

Query: 310 QLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFE 369
                   I  + +P+ I Y+ ++  LC     D   +   +M+     PDS+ Y+    
Sbjct: 504 --------ISKSCLPDRITYSTLMNALCKEGRFDEAKKKLVEMIGKDISPDSVIYDTFIH 555

Query: 370 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 429
               + +     K   +M K    P+  +    I    +  + +  +++ + + E GI  
Sbjct: 556 GYCMHGKTSLAIKVLRDMEKRSCNPSTRSYNLLIWGFQEKQKSDEILKLMSEMKEKGISS 615

Query: 430 LEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476
              + N L+      G ++      +EML   I+    +   L KAF
Sbjct: 616 NVMTYNSLIKSFCGRGMVNKAMPLLDEMLQNEIVPNVTSFGLLIKAF 662


>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
 gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
 gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
 gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
 gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
 gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
          Length = 687

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 98/436 (22%), Positives = 184/436 (42%), Gaps = 20/436 (4%)

Query: 51  SSARIIC-----EILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA 105
           S+AR+ C     + LA AS +  E+      +       HE+  L       A+D F   
Sbjct: 17  SAARLFCTRSIRDTLAKASGESCEAGFGGESLKLQSGF-HEIKGLE-----DAIDLFSDM 70

Query: 106 GRGQRL-SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKY 163
            R + L S   +  ++ V+ +  R + + +  + M+   +   + +F  +   +C   K 
Sbjct: 71  LRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNILIKCFCSCSKL 130

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAI 222
             A+ +F  ++  G+  DVV   +LL  +C  E++ S AL+F +++ +    P+  +F  
Sbjct: 131 PFALSTFGKITKLGLHPDVVTFTTLLHGLC-VEDRVSEALDFFHQMFETTCRPNVVTFTT 189

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+ G  +EG + EA      M+E     P  +  Y T +  + +      AL  LR M+ 
Sbjct: 190 LMNGLCREGRIVEAVALLDRMMED-GLQPTQI-TYGTIVDGMCKKGDTVSALNLLRKMEE 247

Query: 283 -ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
             +  P +  +S  +D L K    + A  L+  M   G  + P+L  YN++I   C++  
Sbjct: 248 VSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKG--IFPDLFTYNSMIVGFCSSGR 305

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
             +  +   +M+     PD +TYN +    +K  +  E E+ + EM+     P  +  ++
Sbjct: 306 WSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSS 365

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461
            I      +  + A  ++  +   G  P   + N L+ G     R+ D      EM    
Sbjct: 366 MIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETG 425

Query: 462 ILIYEVTMHKLKKAFY 477
           ++    T + L   FY
Sbjct: 426 LVADTTTYNTLIHGFY 441



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 77/387 (19%), Positives = 160/387 (41%), Gaps = 20/387 (5%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +N M+     +GR+      ++ M E  +   + T+ ++ +++   GK+ EA   +D 
Sbjct: 291 FTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDE 350

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M   G+  + +  +S++   C+Q    +    F     K   P+  +F  L++G+     
Sbjct: 351 MLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKR 410

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG----KQVDEALKFLRVMKGENCFPT 288
           +++  +   EM E        ++A  T   TLI G      ++ AL  L+ M      P 
Sbjct: 411 IDDGMELLHEMTET------GLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPD 464

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIM--------VGIGFN-LMPNLIMYNAVIGLLCNN 339
           +      LD L        A++++ +M            FN + P++  YN +I  L N 
Sbjct: 465 IVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINE 524

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
                    +++M   G  PD++TY+ + + L K  R+ E  + F  M    + P  +  
Sbjct: 525 GKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTF 584

Query: 400 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
            T I     A   +  +E++  +   GI+    +   L+ G R +G ++      +EM++
Sbjct: 585 TTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMIS 644

Query: 460 RRILIYEVTMHKLKKAFYNESRSMRDI 486
             +    +T+  +    +++    R +
Sbjct: 645 SGVYPDTITIRNMLTGLWSKEELKRAV 671



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 120/302 (39%), Gaps = 42/302 (13%)

Query: 182 VVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFG 241
           VV    L+  + R E        +    +K +  D  SF IL++ +     +  A  TFG
Sbjct: 79  VVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTFG 138

Query: 242 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
           + + +   +P+ V+ + T L  L    +V EAL F   M    C P +  F+  ++ L +
Sbjct: 139 K-ITKLGLHPD-VVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCR 196

Query: 302 LNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM--VFHGAFP 359
                 AV L D M+  G  L P  I Y  ++  +C   D  +      +M  V H   P
Sbjct: 197 EGRIVEAVALLDRMMEDG--LQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSH-IIP 253

Query: 360 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 419
           + + Y+ I + L K+ R  + +  F EM                                
Sbjct: 254 NVVIYSAIIDSLCKDGRHSDAQNLFTEM-------------------------------- 281

Query: 420 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 479
               E GI P   + N ++VG  + GR SD  +  +EML R+I    VT + L  AF  E
Sbjct: 282 ---QEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKE 338

Query: 480 SR 481
            +
Sbjct: 339 GK 340


>gi|218190347|gb|EEC72774.1| hypothetical protein OsI_06434 [Oryza sativa Indica Group]
          Length = 579

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 91/416 (21%), Positives = 174/416 (41%), Gaps = 46/416 (11%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCG-AGKYDE 165
           +G +L  +A+N+++D L K G  +Q +     MK+   +      +I     G AG+  +
Sbjct: 157 KGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQKHCVPDAYTYTILIRMSGKAGRTSK 216

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICR-------------------QENQTSRALEF- 205
            +  FD M   G   +++A N+++ A+ +                   Q NQ + ++   
Sbjct: 217 FLSFFDEMVSKGCVLNLIAFNTIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLD 276

Query: 206 -------LNRVKKIVD-----PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH 253
                  L+R+ +++D      +   ++ L++   K G+  EA+  F  M     WN   
Sbjct: 277 ILATEGQLHRLNEVLDICSRFMNRSIYSYLVKSLCKSGHASEAHNVFCRM-----WNSHE 331

Query: 254 VL---AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
                A+ + L  L   ++  EA+  L +M  +     +  ++     L KL   +    
Sbjct: 332 KGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISN 391

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
           L+D M   G  ++P++  YN +I        VD     F+ M      PD +TYN +  C
Sbjct: 392 LFDKMKTNG--IIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINC 449

Query: 371 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 430
           L K+  + E    F EM +  + P     +  I     +++ E+A  +++ ++  G  P 
Sbjct: 450 LGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPN 509

Query: 431 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDI 486
             + N LL  L   G+  +  +  E M  + ++   +T   L++    ESRS R +
Sbjct: 510 IVTYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSITYSILERL---ESRSQRTV 562



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 128/275 (46%), Gaps = 19/275 (6%)

Query: 116 WNLMVDVLGKNGR-------FEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVM 168
           ++ +V  L K+G        F +MWN+      D       F S+ +  C A K  EA+ 
Sbjct: 303 YSYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDA------FVSMLEVLCNAEKTLEAID 356

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGW 227
              +M   G+  DV   N + SA+ + + Q S      +++K   + PD  ++ I++  +
Sbjct: 357 LLHMMPEKGIVTDVGMYNMVFSALGKLK-QVSFISNLFDKMKTNGIIPDVFTYNIMISSY 415

Query: 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
            + G V++A++ F E++E     P+ V+ Y + +  L +   +DEA    + M+ +   P
Sbjct: 416 GRVGLVDKASELF-EVMEASSCKPD-VVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDP 473

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFR 347
            +  +S  ++   K N    A  L+D M+  G    PN++ YN ++  L      +   +
Sbjct: 474 DVFTYSILIECFGKSNKVEMACSLFDEMISEGCT--PNIVTYNILLDCLERRGKTEEAHK 531

Query: 348 FFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
            ++ M   G  PDS+TY+++     +++R   + K
Sbjct: 532 LYETMKQQGLIPDSITYSILERLESRSQRTVRIRK 566



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 74/344 (21%), Positives = 132/344 (38%), Gaps = 34/344 (9%)

Query: 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204
           LS  T+  I  ++  + +  +    ++ M   G + D+ A N LL A+ +      +A +
Sbjct: 126 LSGYTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKA-GMVDQAFQ 184

Query: 205 FLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT 263
               +K K   PD  ++ IL+    K G   +    F EMV +      +++A+ T +  
Sbjct: 185 VFEDMKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSK--GCVLNLIAFNTIIEA 242

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV------KLND------------- 304
           L + K VD+ +  L  M   +C P    +S  LDIL       +LN+             
Sbjct: 243 LGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEVLDICSRFMNRSI 302

Query: 305 ----------STHAVQLWDIMVGI-GFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
                     S HA +  ++   +   +   +   + +++ +LCN +           M 
Sbjct: 303 YSYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMP 362

Query: 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 413
             G   D   YNM+F  L K K+V  +   F +M  N   P        I+        +
Sbjct: 363 EKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVD 422

Query: 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
            A E++  +  +   P   + N L+  L   G L +     +EM
Sbjct: 423 KASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEM 466


>gi|356574874|ref|XP_003555568.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Glycine max]
          Length = 576

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/395 (21%), Positives = 165/395 (41%), Gaps = 43/395 (10%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCG 159
             R   RG       +N+++  L   G+ +     +  + ED    ++ T+  + ++   
Sbjct: 169 ILRMKYRGFSPDVVTYNILIGSLCARGKLDLALKVMDQLLEDNCNPTVITYTILIEATII 228

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
            G  D+A+   D M   G++ D+   N ++  +C++     RA EF++ +     P  + 
Sbjct: 229 HGSIDDAMRLLDEMMSRGLQPDMYTYNVIVRGMCKR-GLVDRAFEFVSNLN--TTPSLNL 285

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           + +LL+G   EG  E   +   +M+   +    +++ Y   + +L R  +  EA+  LRV
Sbjct: 286 YNLLLKGLLNEGRWEAGERLMSDMI--VKGCEPNIVTYSVLISSLCRDGKAGEAVDVLRV 343

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
           MK +   P    +   +    K      A+   D M+  G+  +P+++ YN ++G LC  
Sbjct: 344 MKEKGLNPDAYCYDPLISAFCKEGKVDLAIGFVDDMISAGW--LPDIVNYNTIMGSLCKK 401

Query: 340 DDVD---NVFRFFDQ--------------------------------MVFHGAFPDSLTY 364
              D   N+F+  ++                                M+ +G  PD +TY
Sbjct: 402 GRADEALNIFKKLEEVGCPPNASSYNTMFGALWSSGDKIRALTMILEMLSNGVDPDRITY 461

Query: 365 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 424
           N +   L ++  V E      +M + EWQPT ++    +  L  A     AIE+   +++
Sbjct: 462 NSLISSLCRDGMVDEAIGLLVDMERTEWQPTVISYNIVLLGLCKAHRIVDAIEVLAVMVD 521

Query: 425 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
           NG  P E +   L+ G+   G  S     A+ +++
Sbjct: 522 NGCQPNETTYTLLVEGVGYAGWRSYAVELAKSLVS 556



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 153/339 (45%), Gaps = 16/339 (4%)

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG 217
           C  GKY EA+   + M   G + DV+    L+  +   + +T +A+  +  +++  DPD 
Sbjct: 88  CKTGKYTEALYFLEQMVKRGYKPDVILCTKLIKGLFTSK-RTEKAVRVMEILEQYGDPDS 146

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            ++  ++ G+ +    + AN+    M  R  ++P+ V+ Y   + +L    ++D ALK +
Sbjct: 147 FAYNAVISGFCRSDRFDAANRVILRMKYR-GFSPD-VVTYNILIGSLCARGKLDLALKVM 204

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337
             +  +NC PT+  ++  ++  +       A++L D M+  G  L P++  YN ++  +C
Sbjct: 205 DQLLEDNCNPTVITYTILIEATIIHGSIDDAMRLLDEMMSRG--LQPDMYTYNVIVRGMC 262

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
               VD  F F   +      P    YN++ + L+   R    E+   +MI    +P  +
Sbjct: 263 KRGLVDRAFEFVSNL---NTTPSLNLYNLLLKGLLNEGRWEAGERLMSDMIVKGCEPNIV 319

Query: 398 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457
             +  I+ L    +   A+++   + E G+ P     + L+      G++     F ++M
Sbjct: 320 TYSVLISSLCRDGKAGEAVDVLRVMKEKGLNPDAYCYDPLISAFCKEGKVDLAIGFVDDM 379

Query: 458 LNRR----ILIYEVTMHKL-KKAFYNESRSMRDIFDSLE 491
           ++      I+ Y   M  L KK   +E+    +IF  LE
Sbjct: 380 ISAGWLPDIVNYNTIMGSLCKKGRADEA---LNIFKKLE 415



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 72/340 (21%), Positives = 143/340 (42%), Gaps = 9/340 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           RG +        ++  L  + R E+    + ++++ G      + ++   +C + ++D A
Sbjct: 106 RGYKPDVILCTKLIKGLFTSKRTEKAVRVMEILEQYGDPDSFAYNAVISGFCRSDRFDAA 165

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLE 225
                 M   G   DVV  N L+ ++C +  +   AL+ ++++ +   +P   ++ IL+E
Sbjct: 166 NRVILRMKYRGFSPDVVTYNILIGSLCAR-GKLDLALKVMDQLLEDNCNPTVITYTILIE 224

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
                G++++A +   EM+ R    P+ +  Y   +  + +   VD A +F+  +   N 
Sbjct: 225 ATIIHGSIDDAMRLLDEMMSR-GLQPD-MYTYNVIVRGMCKRGLVDRAFEFVSNL---NT 279

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P+L  ++  L  L+         +L   M+  G    PN++ Y+ +I  LC +      
Sbjct: 280 TPSLNLYNLLLKGLLNEGRWEAGERLMSDMIVKGCE--PNIVTYSVLISSLCRDGKAGEA 337

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
                 M   G  PD+  Y+ +     K  +V     F  +MI   W P  +N  T +  
Sbjct: 338 VDVLRVMKEKGLNPDAYCYDPLISAFCKEGKVDLAIGFVDDMISAGWLPDIVNYNTIMGS 397

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 445
           L      + A+ I+  + E G  P  +S N +   L + G
Sbjct: 398 LCKKGRADEALNIFKKLEEVGCPPNASSYNTMFGALWSSG 437


>gi|242081015|ref|XP_002445276.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
 gi|241941626|gb|EES14771.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
          Length = 768

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/328 (22%), Positives = 149/328 (45%), Gaps = 8/328 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+  +   Y   GK+ E V     MS HG++ D V    LL  +C+    T     F + 
Sbjct: 239 TYTCLIHGYLSTGKWKEVVQMLQEMSTHGLQPDCVIYAVLLDYLCKNGRCTEARNIFDSL 298

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           ++K + P    + ILL G+  EG + E + +F +++ R   +P+H + +        +  
Sbjct: 299 IRKGIKPHVTIYGILLHGYATEGALSEMH-SFLDLMVRNGVSPDHHI-FNIMFNAYAKKA 356

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
            +DEA+     M+ +   P +  +   +D L KL     AV  ++ M+  G  + P++ +
Sbjct: 357 MIDEAMHIFDKMRQQWLSPGVVNYGALIDALCKLGRVDDAVLKFNQMINEG--VTPDIFV 414

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           +++++  LC  D  +   + F +++  G   ++  +N++   L +  RV E ++    M+
Sbjct: 415 FSSLVYGLCTVDKWEKAEKLFFEVLDQGIRLNAAFFNILMCNLCREGRVMEAQRLIDLML 474

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
           + + +P  ++  T +         + A ++ + ++  G+ P E + N LL G     R+ 
Sbjct: 475 RVDVRPDVISYNTLVDGHCLTGRIDEAAKLLDVMVSIGLKPDEFTYNTLLHGYCKARRID 534

Query: 449 DVRRFAEEMLNR----RILIYEVTMHKL 472
           D      EML +     ++ Y   +H L
Sbjct: 535 DAYSLFREMLMKGLTPGVVTYNTILHGL 562



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 101/443 (22%), Positives = 181/443 (40%), Gaps = 27/443 (6%)

Query: 60  LAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVD-----FFRWAGRGQRLSPY 114
           L H  +DD + +        TP++V     +     +  VD     F     +G R + +
Sbjct: 186 LMHMMADDGDGS-------HTPNVVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNH 238

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +  ++      G+++++   ++ M   G+      +A + D  C  G+  EA   FD +
Sbjct: 239 TYTCLIHGYLSTGKWKEVVQMLQEMSTHGLQPDCVIYAVLLDYLCKNGRCTEARNIFDSL 298

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEKEGN 232
              G++  V     LL      E   S    FL+  V+  V PD   F I+   + K+  
Sbjct: 299 IRKGIKPHVTIYGILLHGYA-TEGALSEMHSFLDLMVRNGVSPDHHIFNIMFNAYAKKAM 357

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           ++EA   F +M  R +W    V+ Y   +  L +  +VD+A+     M  E   P +  F
Sbjct: 358 IDEAMHIFDKM--RQQWLSPGVVNYGALIDALCKLGRVDDAVLKFNQMINEGVTPDIFVF 415

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           S+ +  L  ++    A +L+  ++  G  L  N   +N ++  LC    V    R  D M
Sbjct: 416 SSLVYGLCTVDKWEKAEKLFFEVLDQGIRL--NAAFFNILMCNLCREGRVMEAQRLIDLM 473

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
           +     PD ++YN + +      R+ E  K    M+    +P      T +     A   
Sbjct: 474 LRVDVRPDVISYNTLVDGHCLTGRIDEAAKLLDVMVSIGLKPDEFTYNTLLHGYCKARRI 533

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR----ILIYEVT 468
           + A  ++  +L  G+ P   + N +L GL  +GR  + +     M+N R    I  Y + 
Sbjct: 534 DDAYSLFREMLMKGLTPGVVTYNTILHGLFQIGRFCEAKELYLNMINNRRKCDIYTYTII 593

Query: 469 MHKL-KKAFYNESRSMRDIFDSL 490
           ++ L +  F +E+  M   F SL
Sbjct: 594 LNGLCRNNFVDEAFKM---FQSL 613



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 128/308 (41%), Gaps = 9/308 (2%)

Query: 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRAL--EFLNRVKK----I 212
           G+   D+A+  FD M  +     V   N LL+ + R    ++  L     NR+ +     
Sbjct: 28  GSLGLDDALKLFDEMLTYARPASVRTFNRLLTVVSRARCSSASELVVSLFNRMIRECSVK 87

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
           V P   ++ IL+  + + G ++     FG ++ +  W+  + + +   L  L   K+VDE
Sbjct: 88  VAPSSCTYTILIGCFCRMGRLKHGFAAFG-LILKTGWSLNNTVIFGQLLKGLCDAKRVDE 146

Query: 273 ALK-FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG-FNLMPNLIMYN 330
           A    LR M    C   +  ++  L  L     +  A++L  +M   G  +  PN++ Y 
Sbjct: 147 ATDILLRRMPEFGCTLNVISYNILLKGLCNEKRAEEALELMHMMADDGDGSHTPNVVTYT 206

Query: 331 AVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 390
            VI  LC    VD     F  M+  G  P++ TY  +    +   +  EV +   EM  +
Sbjct: 207 TVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSTGKWKEVVQMLQEMSTH 266

Query: 391 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 450
             QP  +  A  +  L        A  I++ ++  GI P       LL G    G LS++
Sbjct: 267 GLQPDCVIYAVLLDYLCKNGRCTEARNIFDSLIRKGIKPHVTIYGILLHGYATEGALSEM 326

Query: 451 RRFAEEML 458
             F + M+
Sbjct: 327 HSFLDLMV 334



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 88/375 (23%), Positives = 150/375 (40%), Gaps = 47/375 (12%)

Query: 107 RGQRLSPYAWNL--MVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           R Q LSP   N   ++D L K GR +        M  +GV   +  F+S+    C   K+
Sbjct: 369 RQQWLSPGVVNYGALIDALCKLGRVDDAVLKFNQMINEGVTPDIFVFSSLVYGLCTVDKW 428

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN--QTSRALEFLNRVKKIVDPDGDSFA 221
           ++A   F  +   G+  +    N L+  +CR+    +  R ++ + RV   V PD  S+ 
Sbjct: 429 EKAEKLFFEVLDQGIRLNAAFFNILMCNLCREGRVMEAQRLIDLMLRVD--VRPDVISYN 486

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L++G    G ++EA K    MV      P+    Y T L    + +++D+A    R M 
Sbjct: 487 TLVDGHCLTGRIDEAAKLLDVMVS-IGLKPDE-FTYNTLLHGYCKARRIDDAYSLFREML 544

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
            +   P +  ++  L  L ++     A +L+  M  I      ++  Y  ++  LC N+ 
Sbjct: 545 MKGLTPGVVTYNTILHGLFQIGRFCEAKELYLNM--INNRRKCDIYTYTIILNGLCRNNF 602

Query: 342 VDNVFRFFDQM--------VF---------------------------HGAFPDSLTYNM 366
           VD  F+ F  +        +F                           +G  PD  TY +
Sbjct: 603 VDEAFKMFQSLCSKDLQLDIFTINIMIGALLKGGRKEDAMDLFATISAYGLVPDVETYRL 662

Query: 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 426
           I E LIK   + E+++ F  M +N   P        +  LL   +   A  ++   L+  
Sbjct: 663 IAENLIKEGSLEELDELFSAMEENGTAPNSRMLNALVRWLLHRGDIGRA-GVYLSKLDEK 721

Query: 427 ILPLEASANELLVGL 441
              LEAS   +L+ +
Sbjct: 722 NFSLEASTTSMLISI 736


>gi|449507908|ref|XP_004163164.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
           mitochondrial-like [Cucumis sativus]
          Length = 685

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 101/440 (22%), Positives = 183/440 (41%), Gaps = 47/440 (10%)

Query: 51  SSARIICEILAHASSDDIESALACTGIIPTPDL------VHEVLQL---SYDSPSSAVDF 101
           S+  I+ +I +  S++D+E    CTG+I   DL         +LQ    S DS  +   +
Sbjct: 203 STVNILIKIFS--SNEDLE---LCTGLIKKWDLRLNAYTYRCLLQAHIRSRDSDRAFNVY 257

Query: 102 FRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGA- 160
                 G +L  +A+N+++D L K+ + ++ +   + MK           +I     G  
Sbjct: 258 MEMWSNGYQLDIFAYNMLLDALAKDEQLDRSYKVFKDMKLKHCNPDEYTYTIMIRMTGKM 317

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSF 220
           G+ +E++  F+ M   G   +++A N+++ A+ +        L F N +K    P+  ++
Sbjct: 318 GRAEESLALFEEMLTKGCTPNLIAYNTMIQALSKSGMVDKAILLFCNMIKNNCRPNEFTY 377

Query: 221 AILLEGWEKEGNV-------EEANKTFGEMVERF---------EWNPEHVL--------- 255
           +I+L     EG +       E +NK   + +  +           +  H L         
Sbjct: 378 SIILNVLVAEGQLGRLDEVLEVSNKFINKSIYAYLVRTLSKLGHSSEAHRLFCNMWSFHD 437

Query: 256 -----AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
                AY + L +L RG +  EA++ L  +  +        ++  L  L KL   +H   
Sbjct: 438 GGDRDAYISMLESLCRGGKTVEAIELLSKVHEKGISTDTMMYNTVLSTLGKLKQVSHLHD 497

Query: 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370
           L++ M   G    P++  YN +I  L     V      F+++      PD ++YN +  C
Sbjct: 498 LYEKMKQDG--PFPDIFTYNILISSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLINC 555

Query: 371 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 430
           L KN  V E    F EM      P  +  +T I      D+ E+A  +++ ++  G  P 
Sbjct: 556 LGKNGDVDEAHMRFLEMQDKGLNPDVVTYSTLIECFGKTDKVEMARSLFDRMITQGCCPN 615

Query: 431 EASANELLVGLRNLGRLSDV 450
             + N LL  L   GR ++ 
Sbjct: 616 IVTYNILLDCLERAGRTAET 635



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/329 (22%), Positives = 150/329 (45%), Gaps = 17/329 (5%)

Query: 80  TPDLVHEVLQLSYDSPSSAVD-----FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWN 134
           TP+L+     +   S S  VD     F        R + + ++++++VL   G+  ++  
Sbjct: 336 TPNLIAYNTMIQALSKSGMVDKAILLFCNMIKNNCRPNEFTYSIILNVLVAEGQLGRLDE 395

Query: 135 AVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSF-DVMSMH-GVEQDVVAVNSLLSAI 192
            + V   +  ++   +A +  +    G   EA   F ++ S H G ++D  A  S+L ++
Sbjct: 396 VLEV--SNKFINKSIYAYLVRTLSKLGHSSEAHRLFCNMWSFHDGGDRD--AYISMLESL 451

Query: 193 CRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           CR   +T  A+E L++V +K +  D   +  +L    K   V   +  + +M +   + P
Sbjct: 452 CRG-GKTVEAIELLSKVHEKGISTDTMMYNTVLSTLGKLKQVSHLHDLYEKMKQDGPF-P 509

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           + +  Y   + +L R  +V EA++    ++  +C P +  +++ ++ L K  D   A   
Sbjct: 510 D-IFTYNILISSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLINCLGKNGDVDEAHMR 568

Query: 312 WDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECL 371
           +  M   G N  P+++ Y+ +I      D V+     FD+M+  G  P+ +TYN++ +CL
Sbjct: 569 FLEMQDKGLN--PDVVTYSTLIECFGKTDKVEMARSLFDRMITQGCCPNIVTYNILLDCL 626

Query: 372 IKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
            +  R  E    + ++ +    P  +  A
Sbjct: 627 ERAGRTAETVDLYAKLREQGLTPDSITYA 655



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 87/411 (21%), Positives = 164/411 (39%), Gaps = 46/411 (11%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176
           N+++ +   N   E     ++  K D  L+  T+  +  ++  +   D A   +  M  +
Sbjct: 206 NILIKIFSSNEDLELCTGLIK--KWDLRLNAYTYRCLLQAHIRSRDSDRAFNVYMEMWSN 263

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEE 235
           G + D+ A N LL A+ + E Q  R+ +    +K K  +PD  ++ I++    K G  EE
Sbjct: 264 GYQLDIFAYNMLLDALAKDE-QLDRSYKVFKDMKLKHCNPDEYTYTIMIRMTGKMGRAEE 322

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
           +   F EM+ +      +++AY T +  L +   VD+A+     M   NC P    +S  
Sbjct: 323 SLALFEEMLTK--GCTPNLIAYNTMIQALSKSGMVDKAILLFCNMIKNNCRPNEFTYSII 380

Query: 296 LDILV--------------------------------KLNDSTHAVQLWDIMVGIGFNLM 323
           L++LV                                KL  S+ A +L+  M    F+  
Sbjct: 381 LNVLVAEGQLGRLDEVLEVSNKFINKSIYAYLVRTLSKLGHSSEAHRLFCNM--WSFHDG 438

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
            +   Y +++  LC             ++   G   D++ YN +   L K K+V  +   
Sbjct: 439 GDRDAYISMLESLCRGGKTVEAIELLSKVHEKGISTDTMMYNTVLSTLGKLKQVSHLHDL 498

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
           + +M ++   P        I+ L    + + A+E++  +  +   P   S N L+  L  
Sbjct: 499 YEKMKQDGPFPDIFTYNILISSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLINCLGK 558

Query: 444 LGRLSDVR-RFAE---EMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSL 490
            G + +   RF E   + LN  ++ Y   +    K   ++    R +FD +
Sbjct: 559 NGDVDEAHMRFLEMQDKGLNPDVVTYSTLIECFGKT--DKVEMARSLFDRM 607


>gi|449505615|ref|XP_004162522.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g73400, mitochondrial-like [Cucumis sativus]
          Length = 559

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 108/456 (23%), Positives = 199/456 (43%), Gaps = 32/456 (7%)

Query: 67  DIESALACTGIIPTPDLVHEVL-QLSYDSPSSAVDFFRWAGRGQRLS--PYAWNLMVDVL 123
           D+E AL   G+  T DLV ++L +L +D    A  FF WA R +  S  P  +N M+D+L
Sbjct: 102 DMEGALDQVGVYLTTDLVADILHRLRFDE-KLAFRFFTWAARQENYSHEPRVYNEMIDIL 160

Query: 124 G----KNGRFEQMWNAVRVMKEDGVLSLPT--FASIFDSYCGAGKYDEAVMSFDVMSMHG 177
                K  +F  + + +  MK +   ++P      I  +Y    KY   +  F       
Sbjct: 161 SSTRYKVKQFRIVCDLLDYMKRNDKNTVPVEVLFGILRNY--TDKYLTCLQKFAKKKKVI 218

Query: 178 VEQ--DVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEE 235
           V++  ++ A N LL A+C+  +    A   L +VKK + PD +++ I+  GW +  N   
Sbjct: 219 VKRQPEINAFNLLLDALCKC-SLVEDAEALLKKVKKKLKPDANTYNIMXFGWCRVRNPGR 277

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA---LKFLRVMKGENCFPTLKFF 292
             +   EM+E   ++P++   Y T + +  +   + EA    +F+R        PT K +
Sbjct: 278 GMRVLEEMIE-LGFDPDN-FTYNTAIASFCKAGMLKEACELFEFMRTKGSALSSPTAKTY 335

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  +  LV         +  + M+  G   +P++  Y  +I  +C    V   + F ++M
Sbjct: 336 AIMIVALVNNGRMEECFKFLEYMIKSG--CLPDVSTYKEMIEGICVAGKVQEAYMFLEEM 393

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
              G  PD +TYN   + L  NK   +  +    MI+    P+       I+M  + ++ 
Sbjct: 394 GKKGYPPDIVTYNCFLKVLCDNKMSDDALRHCDRMIEVGCLPSVQTYNMLISMFFEMNDH 453

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI---------L 463
             A +IW  +   G      S   ++ GL    ++ D     EE++N+ +          
Sbjct: 454 NGAFQIWLEMDRYGCTRDVDSYCIMIEGLFGCNKVGDACLLLEEVVNKGMKLPFRKFDSF 513

Query: 464 IYEVTMHKLKKAFYNESRSMRDIFD-SLERRCKTSQ 498
           + +++++   K  +  S  MR  ++ ++ RR   +Q
Sbjct: 514 LMQLSVNGNLKGIHRLSEHMRKFYNRAMARRFSLNQ 549


>gi|255660988|gb|ACU25663.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
          Length = 376

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 80/366 (21%), Positives = 165/366 (45%), Gaps = 14/366 (3%)

Query: 109 QRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
            ++SP A  +N M++   +  + +  +    +M  +G  S+ +F  +       GK +E 
Sbjct: 19  SKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGREGNRSVSSFNIMMRGLFDNGKVEEV 78

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQE--NQTSRALEFLNRVKKIVDPDGDSFAILL 224
           +  +++M   G  +D +    L+   C+    +++   LE   +   +VD    +++ ++
Sbjct: 79  IXIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVVDAF--AYSAMI 136

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G  KE N++ A      M++       HV  Y T +  L+   + ++A++  R M   +
Sbjct: 137 NGLCKEANLDRAVCVLNGMIKSGCKPNAHV--YNTLINGLVGASKFEDAIRVFREMGTMH 194

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344
           C PT+  ++  ++ L K      A  L   ++  G N  P +I Y+ +   LC +  V+ 
Sbjct: 195 CSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLN--PGVITYSMLXKGLCLDHKVEK 252

Query: 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP--LNCATA 402
             + ++Q+   G  PD   +N++   L    ++      + +M  N W+  P  ++  T 
Sbjct: 253 ALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQHALSLYFDM--NRWKCAPNLVSHNTL 310

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
           +       +   A+ IW  IL NG+ P   S N  L GL +  R+SD   F  + + ++I
Sbjct: 311 MEGFYKDGDIRNALVIWARILRNGLEPDIISYNITLKGLCSCNRISDAILFLHDAVTKKI 370

Query: 463 LIYEVT 468
           ++ ++T
Sbjct: 371 VLTKIT 376


>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
 gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
          Length = 1013

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 88/376 (23%), Positives = 150/376 (39%), Gaps = 15/376 (3%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG   S    N ++  L +      +W     M   G+   + T++++ ++YC   ++D 
Sbjct: 203 RGMAPSIRCCNALLKDLLRADAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDT 262

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD-----PDGDSF 220
           A      M   G   + V  N L++ +CR     S A+E     KK ++     PDG ++
Sbjct: 263 AKKVLVEMRERGCGLNTVTYNVLIAGLCR-----SGAVEEAFGFKKDMEDYGLVPDGFTY 317

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
             L+ G  K     EA     EM    E  P +V+ Y   +   +R    DEA K ++ M
Sbjct: 318 GALINGLCKSRRSNEAKALLDEM-SCAELKP-NVVVYANLIDGFMREGNADEAFKMIKEM 375

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340
                 P    + N +  L K+     A  L   MV       P+ I YN +I     + 
Sbjct: 376 VAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHR--PDTITYNLIIEGHFRHH 433

Query: 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400
              + FR   +M   G  P+  TY+++   L ++    +      EM     +P     A
Sbjct: 434 SKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYA 493

Query: 401 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
             I+         +A EI++ + +  +LP     N L+ GL  +GR+ +  ++  +M  R
Sbjct: 494 PLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQER 553

Query: 461 RILIYEVTMHKLKKAF 476
            +L  E T   L   +
Sbjct: 554 GLLPNEFTYSGLIHGY 569



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 84/374 (22%), Positives = 157/374 (41%), Gaps = 9/374 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDE 165
           RG  L+   +N+++  L ++G  E+ +   + M++ G++    T+ ++ +  C + + +E
Sbjct: 273 RGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNE 332

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A    D MS   ++ +VV   +L+    R+ N           V   V P+  ++  L+ 
Sbjct: 333 AKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVR 392

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G  K G ++ A+    +MV R    P+  + Y   +    R     +A + L  M+    
Sbjct: 393 GLCKMGQMDRASLLLKQMV-RDSHRPD-TITYNLIIEGHFRHHSKKDAFRLLSEMENAGI 450

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345
            P +  +S  +  L +  +   A  L + M   G  L PN  +Y  +I   C   +V   
Sbjct: 451 SPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKG--LKPNAFVYAPLISGYCREGNVSLA 508

Query: 346 FRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405
              FD+M      PD   YN +   L K  RV E  K+F +M +    P     +  I  
Sbjct: 509 CEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHG 568

Query: 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL-- 463
            L   + E A ++   +L+ G+ P +    +LL        +  V    + ML++ ++  
Sbjct: 569 YLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLD 628

Query: 464 --IYEVTMHKLKKA 475
             IY + +H L  +
Sbjct: 629 NRIYGILIHNLSSS 642



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 146/350 (41%), Gaps = 45/350 (12%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T++ +    C +G+ ++A    + M+  G++ +      L+S  CR+ N  S A E  ++
Sbjct: 456 TYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGN-VSLACEIFDK 514

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           + K+ V PD   +  L+ G  K G VEE+ K F +M ER     E    Y   +   ++ 
Sbjct: 515 MTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNE--FTYSGLIHGYLKN 572

Query: 268 KQVDEALKFLRVM--------------------KGENCFPTLKFFSNALDILVKLNDSTH 307
             ++ A + ++ M                    K ++       F + LD  V L++  +
Sbjct: 573 GDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIY 632

Query: 308 AVQL------------WDIMVGIGFN-LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354
            + +            + ++ GI  N  +P++ +Y+++I  LC   D +  F   D+M  
Sbjct: 633 GILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSK 692

Query: 355 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD---- 410
            G  P+ + YN + + L K+  +      F+ ++     P   NC T  T L+D      
Sbjct: 693 KGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVP---NCVT-YTSLIDGSCKVG 748

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460
           +   A  ++N +L  GI P     + L  G  + G L       EEM  R
Sbjct: 749 DISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLR 798



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 80/375 (21%), Positives = 162/375 (43%), Gaps = 11/375 (2%)

Query: 108 GQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYD 164
           G  +SP  Y ++ +++   K   F+     +  M+E G  L+  T+  +    C +G  +
Sbjct: 237 GAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVE 296

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAIC--RQENQTSRALEFLNRVKKIVDPDGDSFAI 222
           EA      M  +G+  D     +L++ +C  R+ N+    L+ ++  +  + P+   +A 
Sbjct: 297 EAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAE--LKPNVVVYAN 354

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L++G+ +EGN +EA K   EMV      P  +  Y+  +  L +  Q+D A   L+ M  
Sbjct: 355 LIDGFMREGNADEAFKMIKEMVAA-GVQPNKI-TYDNLVRGLCKMGQMDRASLLLKQMVR 412

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
           ++  P    ++  ++   + +    A +L   M   G +  PN+  Y+ +I  LC + + 
Sbjct: 413 DSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGIS--PNVYTYSIMIHGLCQSGEP 470

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
           +      ++M   G  P++  Y  +     +   V    + F +M K    P      + 
Sbjct: 471 EKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSL 530

Query: 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
           I  L      E + + +  + E G+LP E + + L+ G    G L    +  + ML+  +
Sbjct: 531 IFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGL 590

Query: 463 LIYEVTMHKLKKAFY 477
              +V    L ++++
Sbjct: 591 KPNDVIYIDLLESYF 605



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/301 (22%), Positives = 131/301 (43%), Gaps = 6/301 (1%)

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEG 231
           M   G+  +V   + ++  +C Q  +  +A + L  +  K + P+   +A L+ G+ +EG
Sbjct: 445 MENAGISPNVYTYSIMIHGLC-QSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREG 503

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           NV  A + F +M  +    P+ +  Y + +  L +  +V+E+ K+   M+     P    
Sbjct: 504 NVSLACEIFDKMT-KVNVLPD-LYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFT 561

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           +S  +   +K  D   A QL   M+  G  L PN ++Y  ++     +DD++ V   F  
Sbjct: 562 YSGLIHGYLKNGDLESAEQLVQRMLDTG--LKPNDVIYIDLLESYFKSDDIEKVSSTFKS 619

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M+  G   D+  Y ++   L  +  +    +    + KN   P     ++ I+ L    +
Sbjct: 620 MLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTAD 679

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK 471
            E A  I + + + G+ P     N L+ GL   G +S  R     +L + ++   VT   
Sbjct: 680 REKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTS 739

Query: 472 L 472
           L
Sbjct: 740 L 740



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 102/237 (43%), Gaps = 4/237 (1%)

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           +L++ ++K G V++A +    M +R       +      L  L+R   +    K    M 
Sbjct: 179 VLVDTYKKSGRVQDAAEVVLMMRDR--GMAPSIRCCNALLKDLLRADAMALLWKVREFMV 236

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341
           G    P +  +S  ++   K+ +   A ++   M   G  L  N + YN +I  LC +  
Sbjct: 237 GAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGL--NTVTYNVLIAGLCRSGA 294

Query: 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401
           V+  F F   M  +G  PD  TY  +   L K++R +E +    EM   E +P  +  A 
Sbjct: 295 VEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYAN 354

Query: 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
            I   +     + A ++   ++  G+ P + + + L+ GL  +G++       ++M+
Sbjct: 355 LIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMV 411


>gi|297727505|ref|NP_001176116.1| Os10g0368800 [Oryza sativa Japonica Group]
 gi|20043026|gb|AAM08834.1|AC113335_14 Putative PPR-repeat protein [Oryza sativa Japonica Group]
 gi|22830267|gb|AAN08650.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31431615|gb|AAP53366.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255679344|dbj|BAH94844.1| Os10g0368800 [Oryza sativa Japonica Group]
          Length = 913

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 90/398 (22%), Positives = 162/398 (40%), Gaps = 13/398 (3%)

Query: 93  DSPSSAVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPT 149
           D  + A+  +R      R+ P  + + +    L + GR ++    +R M   G V     
Sbjct: 153 DCHADALALYRRMVHRDRVPPTTFTFGVAARALCRLGRADEALALLRGMARHGCVPDAVL 212

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           + ++  + C  G   EA    + M + G   DV   + ++  +C    +   A   ++R+
Sbjct: 213 YQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMC-GLGRVREAARLVDRM 271

Query: 210 -KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
             K   P   ++  LL+G  +    +EA    G + E       +V+ + T +   +   
Sbjct: 272 MTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPEL------NVVLFNTVIGGCLAEG 325

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           ++ EA +    M  + C P    +S  +  L KL     AV+L   M   GF   PN++ 
Sbjct: 326 KLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGF--APNVVT 383

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           Y  V+   C N   D+     ++M   G   +S  YN +   L K+ R+ E      EM 
Sbjct: 384 YTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMR 443

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
                P   +  T I  L + ++ E A  ++  +LE G++    + N ++  L   GR  
Sbjct: 444 SQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQ 503

Query: 449 DVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDI 486
           D  R A+EM+     +  V+ + L KA   +    R +
Sbjct: 504 DAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSL 541



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 139/356 (39%), Gaps = 37/356 (10%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF  +    CG G+  EA    D M   G    V+    LL  +CR   Q   A   L R
Sbjct: 247 TFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVR-QADEARAMLGR 305

Query: 209 VKKI--------------------------------VDPDGDSFAILLEGWEKEGNVEEA 236
           V ++                                  PD  +++IL+ G  K G +  A
Sbjct: 306 VPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSA 365

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
            +   EM E+  + P +V+ Y   L +  +    D+    L  M  +      + ++  +
Sbjct: 366 VRLLREM-EKKGFAP-NVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMI 423

Query: 297 DILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG 356
             L K      A+ L   M   G N  P++  YN +I  LCNN+ ++     F+ ++  G
Sbjct: 424 YALCKDGRMDEAMGLIQEMRSQGCN--PDICSYNTIIYHLCNNEQMEEAEHMFENLLEEG 481

Query: 357 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 416
              + +TYN I   L+++ R  +  +   EMI +      ++    I  +      + ++
Sbjct: 482 VVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSL 541

Query: 417 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
            +   + E GI P   S N L+  L    R+ D    +++MLN+ +    VT + L
Sbjct: 542 VLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTL 597



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/320 (20%), Positives = 137/320 (42%), Gaps = 8/320 (2%)

Query: 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204
           L++  F ++       GK  EA   ++ M + G + D    + L+  +C+   +   A+ 
Sbjct: 309 LNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKL-GRIGSAVR 367

Query: 205 FLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLI 262
            L  + KK   P+  ++ I+L  + K G  ++      EM  +    N +    Y   + 
Sbjct: 368 LLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQ---GYNGMIY 424

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL 322
            L +  ++DEA+  ++ M+ + C P +  ++  +  L        A  +++ ++  G  +
Sbjct: 425 ALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEG--V 482

Query: 323 MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382
           + N I YN +I  L  +    +  R   +M+ HG   D ++YN + + + K+  V     
Sbjct: 483 VANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLV 542

Query: 383 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 442
              EM +   +P  ++    I+ L        A+E+   +L  G+ P   + N L+ GL 
Sbjct: 543 LLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLC 602

Query: 443 NLGRLSDVRRFAEEMLNRRI 462
            +G +       E++ N  +
Sbjct: 603 KMGWMHAALNLLEKLHNENV 622



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/265 (20%), Positives = 114/265 (43%), Gaps = 15/265 (5%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDG-----VLSLPTFASIFDSYCGAGKYDEAVMSF 170
           + +++    KNG    MW+  R + E+       L+   +  +  + C  G+ DEA+   
Sbjct: 384 YTIVLHSFCKNG----MWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLI 439

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
             M   G   D+ + N+++  +C  E        F N +++ V  +G ++  ++    ++
Sbjct: 440 QEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRD 499

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           G  ++A +   EM+         V++Y   +  + +   VD +L  L  M  +   P   
Sbjct: 500 GRWQDAVRLAKEMI--LHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNV 557

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
            ++  +  L K      A++L   M+  G  L P+++ YN +I  LC    +       +
Sbjct: 558 SYNILISELCKERRVRDALELSKQMLNQG--LAPDIVTYNTLINGLCKMGWMHAALNLLE 615

Query: 351 QMVFHGAFPDSLTYNMI--FECLIK 373
           ++      PD +TYN++  + C ++
Sbjct: 616 KLHNENVHPDIITYNILISWHCKVR 640



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 91/185 (49%), Gaps = 7/185 (3%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKY 163
           R Q  +P   ++N ++  L  N + E+  +    + E+GV++   T+ +I  +    G++
Sbjct: 443 RSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRW 502

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAI 222
            +AV     M +HG   DVV+ N L+ A+C+  N   R+L  L  + +K + P+  S+ I
Sbjct: 503 QDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGN-VDRSLVLLEEMAEKGIKPNNVSYNI 561

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+    KE  V +A +   +M+ +    P+ ++ Y T +  L +   +  AL  L  +  
Sbjct: 562 LISELCKERRVRDALELSKQMLNQ-GLAPD-IVTYNTLINGLCKMGWMHAALNLLEKLHN 619

Query: 283 ENCFP 287
           EN  P
Sbjct: 620 ENVHP 624


>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
          Length = 1128

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/330 (23%), Positives = 141/330 (42%), Gaps = 43/330 (13%)

Query: 101 FFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYC 158
           FF+   G G + + + +N+M+D + K G  E        MK  G++    T+ S+ D Y 
Sbjct: 120 FFKDMIGAGSKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYG 179

Query: 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDG 217
             G+ D+ V  F+ M     E DV+  NSL++  C+   +  + LEF   +K+  + P+ 
Sbjct: 180 KVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKS-GKLPKGLEFYREMKQSGLKPN- 237

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
                                               V++Y T +    +   + +A+KF 
Sbjct: 238 ------------------------------------VVSYSTLVDAFCKEDMMQQAIKFY 261

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337
             M+     P    +++ +D   K+ + + A +L + M+ +G     N++ Y A+I  LC
Sbjct: 262 VDMRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANEMLEVGVEW--NVVTYTALIDGLC 319

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397
           + + +    + F +MV  G  P+  +YN +    +K K +    +  +E+     QP  L
Sbjct: 320 DAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLL 379

Query: 398 NCATAITMLLDADEPEIAIEIWNYILENGI 427
              T I  L   ++ E A  + N + ENGI
Sbjct: 380 LYGTFIWGLCGLEKIEAAKVVMNEMQENGI 409



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 109/228 (47%), Gaps = 4/228 (1%)

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           G +EEA + F +M +RF   P+   +    L    +  + D   +F + M G    PT+ 
Sbjct: 77  GMLEEATQCFSKM-KRFRVFPK-TRSCNGLLHKFAKLGKTDGVKRFFKDMIGAGSKPTVF 134

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350
            ++  +D + K  D   A  L++ M   G  L+P+ + YN++I        +D+   FF+
Sbjct: 135 TYNIMIDCMWKEGDIEAARGLFEEMKFRG--LIPDTVTYNSMIDGYGKVGRLDDTVYFFE 192

Query: 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410
           +M      PD +TYN +  C  K+ ++ +  +F+ EM ++  +P  ++ +T +      D
Sbjct: 193 EMKSMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTLVDAFCKED 252

Query: 411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458
             + AI+ +  +   G +P E +   L+     +G LSD  R A EML
Sbjct: 253 MMQQAIKFYVDMRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANEML 300



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 93/388 (23%), Positives = 144/388 (37%), Gaps = 42/388 (10%)

Query: 93  DSPSSAVDFFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTF 150
           D    A+ F+    R G   + + +  +VD   K G     +     M E GV  ++ T+
Sbjct: 252 DMMQQAIKFYVDMRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANEMLEVGVEWNVVTY 311

Query: 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK 210
            ++ D  C A +  EA   F  M   GV  ++ + N+L+    + +N   RALE LN +K
Sbjct: 312 TALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNM-DRALELLNELK 370

Query: 211 -KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
            + + PD   +   + G      +E A     EM E       + L Y T +    +   
Sbjct: 371 GRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQEN--GIKANTLIYTTLMDAYFKSGN 428

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY 329
             E L  L  M+  +   T+  F   +D L K    + A+  +  M    F L PN  +Y
Sbjct: 429 PTEGLHLLEEMQELDHEVTVVTFCVLIDGLCKNKLVSKAIDYFGRMSN-DFGLQPNAAVY 487

Query: 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389
            A+I  LC  + V      F+QM   G  PD   Y  + +  +K   + E      +M +
Sbjct: 488 TAMIDGLCKENQVKAATTLFEQMAQEGLVPDRTAYTSLMDGNLKQGNMLEALALRDKMAE 547

Query: 390 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 449
                        I M LD                        +   L+ G     +L  
Sbjct: 548 -------------IGMKLDL----------------------LAYTSLVWGFSQCNQLQK 572

Query: 450 VRRFAEEMLNRRILIYEVTMHKLKKAFY 477
            R F EEM+   IL  EV    + K  Y
Sbjct: 573 ARSFLEEMIGEEILPDEVLCIGVLKKHY 600



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/334 (20%), Positives = 135/334 (40%), Gaps = 8/334 (2%)

Query: 129 FEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSL 188
           F+++W+   V     V     F ++F      G  +EA   F  M    V     + N L
Sbjct: 49  FDELWSTRNVC----VPGFGVFDALFSVLIDLGMLEEATQCFSKMKRFRVFPKTRSCNGL 104

Query: 189 LSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFE 248
           L    +          F + +     P   ++ I+++   KEG++E A   F EM  +F 
Sbjct: 105 LHKFAKLGKTDGVKRFFKDMIGAGSKPTVFTYNIMIDCMWKEGDIEAARGLFEEM--KFR 162

Query: 249 WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHA 308
                 + Y + +    +  ++D+ + F   MK  +C P +  +++ ++   K       
Sbjct: 163 GLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKG 222

Query: 309 VQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIF 368
           ++ +  M   G  L PN++ Y+ ++   C  D +    +F+  M   G  P+  TY  + 
Sbjct: 223 LEFYREMKQSG--LKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLV 280

Query: 369 ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 428
           +   K   + +  +  +EM++   +   +     I  L DA+  + A +++  ++  G++
Sbjct: 281 DANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVI 340

Query: 429 PLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 462
           P  AS N L+ G      +        E+  R I
Sbjct: 341 PNLASYNALIHGFVKAKNMDRALELLNELKGRGI 374



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/314 (21%), Positives = 137/314 (43%), Gaps = 10/314 (3%)

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN-QTSRALEFLNRVKKIVDPDGDS 219
           GK D     F  M   G +  V   N ++  + ++ + + +R L    + + ++ PD  +
Sbjct: 112 GKTDGVKRFFKDMIGAGSKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLI-PDTVT 170

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           +  +++G+ K G +++    F EM +     P+ V+ Y + +    +  ++ + L+F R 
Sbjct: 171 YNSMIDGYGKVGRLDDTVYFFEEM-KSMSCEPD-VITYNSLINCFCKSGKLPKGLEFYRE 228

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
           MK     P +  +S  +D   K +    A++ +  M  +G   +PN   Y +++   C  
Sbjct: 229 MKQSGLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGH--VPNEFTYTSLVDANCKI 286

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
            ++ + FR  ++M+  G   + +TY  + + L   +R+ E EK F +M+     P   + 
Sbjct: 287 GNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASY 346

Query: 400 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
              I   + A   + A+E+ N +   GI P        + GL  L ++   +    EM  
Sbjct: 347 NALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQE 406

Query: 460 RRI----LIYEVTM 469
             I    LIY   M
Sbjct: 407 NGIKANTLIYTTLM 420


>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12300, mitochondrial; Flags: Precursor
 gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/338 (21%), Positives = 143/338 (42%), Gaps = 48/338 (14%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEA 166
           G + +   +  +++V+ K+G+       +R M+E  + L    ++ I D  C  G  D A
Sbjct: 223 GCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNA 282

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
              F+ M M G+  +++  N L+   C        A    + +K+ ++P+  +F++L++ 
Sbjct: 283 FNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDS 342

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
           + KEG + EA +   EM+ R    P+ +  Y + +    +   +D+A + + +M  + C 
Sbjct: 343 FVKEGKLREAEELHKEMIHR-GIAPDTI-TYTSLIDGFCKENHLDKANQMVDLMVSKGCD 400

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346
           P ++ F                                     N +I   C  + +D+  
Sbjct: 401 PNIRTF-------------------------------------NILINGYCKANRIDDGL 423

Query: 347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406
             F +M   G   D++TYN + +   +  +++  ++ F EM+  +  P  +     +  L
Sbjct: 424 ELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGL 483

Query: 407 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444
            D  E E A+EI+  I        E S  EL +G+ N+
Sbjct: 484 CDNGESEKALEIFEKI--------EKSKMELDIGIYNI 513



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 85/382 (22%), Positives = 167/382 (43%), Gaps = 8/382 (2%)

Query: 98  AVDFFRWAGRGQRL-SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFD 155
           A+D FR     + L +   ++ +   + K  +++ +    + M+  G+  +L T + + +
Sbjct: 72  AIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMIN 131

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV-D 214
            +C   K   A  +   +   G E + +  ++L++ +C  E + S ALE ++R+ ++   
Sbjct: 132 CFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLC-LEGRVSEALELVDRMVEMGHK 190

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           PD  +   L+ G    G   EA     +MVE +   P  V  Y   L  + +  Q   A+
Sbjct: 191 PDLITINTLVNGLCLSGKEAEAMLLIDKMVE-YGCQPNAV-TYGPVLNVMCKSGQTALAM 248

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334
           + LR M+  N       +S  +D L K     +A  L++ M   G  +  N+I YN +IG
Sbjct: 249 ELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKG--ITTNIITYNILIG 306

Query: 335 LLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
             CN    D+  +    M+     P+ +T++++ +  +K  ++ E E+   EMI     P
Sbjct: 307 GFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAP 366

Query: 395 TPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 454
             +   + I      +  + A ++ + ++  G  P   + N L+ G     R+ D     
Sbjct: 367 DTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELF 426

Query: 455 EEMLNRRILIYEVTMHKLKKAF 476
            +M  R ++   VT + L + F
Sbjct: 427 RKMSLRGVVADTVTYNTLIQGF 448



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/329 (22%), Positives = 141/329 (42%), Gaps = 50/329 (15%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDE 165
           R  +L    +++++D L K+G  +  +N    M+  G+ + + T+  +   +C AG++D+
Sbjct: 257 RNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDD 316

Query: 166 A---------------VMSFDV--------------------MSMHGVEQDVVAVNSLLS 190
                           V++F V                    M   G+  D +   SL+ 
Sbjct: 317 GAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLID 376

Query: 191 AICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW 249
             C+ EN   +A + ++  V K  DP+  +F IL+ G+ K   +++  + F +M  R   
Sbjct: 377 GFCK-ENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLR--- 432

Query: 250 NPEHVLAYETFLITLIRG----KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS 305
               V+A      TLI+G     +++ A +  + M      P +  +   LD L    +S
Sbjct: 433 ---GVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGES 489

Query: 306 THAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYN 365
             A+++++ +      L  ++ +YN +I  +CN   VD+ +  F  +   G  P   TYN
Sbjct: 490 EKALEIFEKIEKSKMEL--DIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYN 547

Query: 366 MIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
           ++   L K   + E E  F +M ++   P
Sbjct: 548 IMIGGLCKKGPLSEAELLFRKMEEDGHAP 576


>gi|222640310|gb|EEE68442.1| hypothetical protein OsJ_26820 [Oryza sativa Japonica Group]
          Length = 621

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/344 (23%), Positives = 140/344 (40%), Gaps = 8/344 (2%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           + S    YC AG    A   F +M + G  +      +LL  +            F+   
Sbjct: 110 YTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMR 169

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGE-MVERFEWNPEHVLAYETFLITLIRGK 268
                PD   +A ++ G  + G  EEA     E M   FE N   ++ Y   +       
Sbjct: 170 ADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPN---IVVYNALIDGYCNAG 226

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
           +++ ALK    M G  C P ++ ++  +  L K      A+ L+  MV  G  L PN++ 
Sbjct: 227 EMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAG--LEPNVVT 284

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           Y A+I   CN   +   FR    M  +G  P+  T++++ + L K ++V E + F   ++
Sbjct: 285 YTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLV 344

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
           K   +   +   + I  L    + + A E+   ++  G +P   S + L+ GL    +LS
Sbjct: 345 KKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLS 404

Query: 449 DVRRFAEEMLNRRILIYEVTMHKLKKAFYNE--SRSMRDIFDSL 490
                 E+M+ + I    VT   +      E  S   + IFD +
Sbjct: 405 QATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKM 448



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/318 (22%), Positives = 138/318 (43%), Gaps = 11/318 (3%)

Query: 108 GQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYD 164
           G R SP    +  ++  L K+G+ E+       M E G+  ++ T+ ++    C  G   
Sbjct: 240 GNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQ 299

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
            A     +M  +G+  +    + L+ A+C++E      L   + VKK V  +   +  L+
Sbjct: 300 CAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLI 359

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM--KG 282
           +G  K G ++ A++   +M+        H  +Y + +  L R K++ +A   L  M  KG
Sbjct: 360 DGLCKTGKIDAADELMQKMISEGFVPDAH--SYSSLIDGLCRQKKLSQATLMLEDMMEKG 417

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342
               P    ++  +D LV+   S    +++D M+  G N  P+++ Y   +   C    +
Sbjct: 418 IQASPVT--YTIIIDELVREVGSEGPKKIFDKMIATGIN--PDIVTYTVFVRSYCEEGRM 473

Query: 343 DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 402
           ++      QMV  G FP+ +TYN +         V +    F  M+   W+P   +    
Sbjct: 474 EDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVL 533

Query: 403 ITMLLDADEPEIAIEIWN 420
           + +++     + +++IW 
Sbjct: 534 LRLVVKKSSSDNSVDIWK 551



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/330 (22%), Positives = 135/330 (40%), Gaps = 6/330 (1%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           +A++    C AG+ +EA +  +    +G E ++V  N+L+   C           F    
Sbjct: 180 YATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMD 239

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGK 268
                P+  ++  L+ G  K G VE A   F  MVE   E N   V+ Y   +       
Sbjct: 240 GNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPN---VVTYTALIQGQCNEG 296

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM 328
            +  A + L +M+     P    FS  +D L K      A      +V  G  +  N ++
Sbjct: 297 HLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKV--NEVV 354

Query: 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
           Y ++I  LC    +D       +M+  G  PD+ +Y+ + + L + K++ +      +M+
Sbjct: 355 YTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMM 414

Query: 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448
           +   Q +P+     I  L+     E   +I++ ++  GI P   +    +      GR+ 
Sbjct: 415 EKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRME 474

Query: 449 DVRRFAEEMLNRRILIYEVTMHKLKKAFYN 478
           D      +M++R +    VT + L + + N
Sbjct: 475 DAESMIVQMVDRGVFPNLVTYNTLIRGYAN 504



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 135/327 (41%), Gaps = 11/327 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSFDV 172
           +N ++D     G  E        M  DG    P   T+  +    C +GK + A++ F  
Sbjct: 215 YNALIDGYCNAGEMEHALKVFEGM--DGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSR 272

Query: 173 MSMHGVEQDVVAVNSLLSAICRQEN-QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
           M   G+E +VV   +L+   C + + Q +  L  L     +V P+  +F++L++   K  
Sbjct: 273 MVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLV-PNDWTFSVLIDALCKRE 331

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            VEEA    G +V++     E V  Y + +  L +  ++D A + ++ M  E   P    
Sbjct: 332 KVEEAQLFLGSLVKKGVKVNEVV--YTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHS 389

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           +S+ +D L +    + A  + + M+  G    P  + Y  +I  L      +   + FD+
Sbjct: 390 YSSLIDGLCRQKKLSQATLMLEDMMEKGIQASP--VTYTIIIDELVREVGSEGPKKIFDK 447

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M+  G  PD +TY +      +  R+ + E    +M+     P  +   T I    +   
Sbjct: 448 MIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGL 507

Query: 412 PEIAIEIWNYILENGILPLEASANELL 438
              A   +  ++  G  P E S   LL
Sbjct: 508 VSQAFSTFEVMVGKGWKPNEDSYTVLL 534


>gi|4455203|emb|CAB36526.1| putative protein [Arabidopsis thaliana]
 gi|7269532|emb|CAB79535.1| putative protein [Arabidopsis thaliana]
          Length = 439

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/358 (22%), Positives = 161/358 (44%), Gaps = 18/358 (5%)

Query: 131 QMWNAV-----RVMKEDGVLSLPTFAS---IFDSYCGAGKYDEAVMSFDVMSMHGVEQDV 182
           QM++ V     R+   +G+   P   +   + + +C   +   A+     M   G+E D+
Sbjct: 24  QMYDVVINLWKRIENAEGIEISPDLYTCNILVNCFCRCFQPSSALSYLGKMMKLGIEPDI 83

Query: 183 VAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFG 241
           V  +SL++  C   N    A+    +++K+ +  D     IL++   K   V  A +   
Sbjct: 84  VTASSLVNGFC-LSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDTLCKNRLVVPALEVLK 142

Query: 242 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
            M +R   +P +V+ Y + +  L +  ++ +A + L  M  +   P +  FS  +D   K
Sbjct: 143 RMKDR-GISP-NVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYAK 200

Query: 302 LNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS 361
               +    ++ +M+ +  +  PN+  Y+++I  LC ++ VD   +  D M+  G  P+ 
Sbjct: 201 RGKLSKVDSVYKMMIQMSID--PNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNV 258

Query: 362 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 421
           +TY+ +     K+ RV +  K   +M +       ++C T I     A + ++A+ ++ Y
Sbjct: 259 VTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGY 318

Query: 422 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR----ILIYEVTMHKLKKA 475
           +  NG++P   S N +L GL   G +       E M   R    I+ Y + +H + KA
Sbjct: 319 MTSNGLIPNIRSYNIVLAGLFANGEVEKALSRFEHMQKTRNDLDIITYTIMIHGMCKA 376



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 63/306 (20%), Positives = 132/306 (43%), Gaps = 43/306 (14%)

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEA 236
           +  D+   N L++  CR   Q S AL +L ++ K+ ++PD  + + L+ G+    ++++A
Sbjct: 44  ISPDLYTCNILVNCFCRCF-QPSSALSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDA 102

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLI-TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
               G+M E+     + V+  +T LI TL + + V  AL+ L+ MK              
Sbjct: 103 VYVAGQM-EKMGIKRDVVV--DTILIDTLCKNRLVVPALEVLKRMKDR------------ 147

Query: 296 LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355
                                GI     PN++ Y+++I  LC +  + +  R   +M   
Sbjct: 148 ---------------------GIS----PNVVTYSSLITGLCKSGRLADAERRLHEMDSK 182

Query: 356 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 415
              P+ +T++ + +   K  ++ +V+  +  MI+    P     ++ I  L   +  + A
Sbjct: 183 KINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEA 242

Query: 416 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKA 475
           I++ + ++  G  P   + + L  G     R+ D  +  ++M  R +    V+ + L K 
Sbjct: 243 IKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKG 302

Query: 476 FYNESR 481
           ++   +
Sbjct: 303 YFQAGK 308



 Score = 43.9 bits (102), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 94/240 (39%), Gaps = 3/240 (1%)

Query: 242 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
           E  E  E +P+ +      +    R  Q   AL +L  M      P +   S+ ++    
Sbjct: 37  ENAEGIEISPD-LYTCNILVNCFCRCFQPSSALSYLGKMMKLGIEPDIVTASSLVNGFCL 95

Query: 302 LNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS 361
            N    AV +   M  +G     ++++   +I  LC N  V        +M   G  P+ 
Sbjct: 96  SNSIKDAVYVAGQMEKMGIK--RDVVVDTILIDTLCKNRLVVPALEVLKRMKDRGISPNV 153

Query: 362 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 421
           +TY+ +   L K+ R+ + E+  HEM   +  P  +  +  I       +      ++  
Sbjct: 154 VTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKM 213

Query: 422 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481
           +++  I P   + + L+ GL    R+ +  +  + M+++      VT   L   F+  SR
Sbjct: 214 MIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSSR 273


>gi|356529499|ref|XP_003533328.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 447

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 138/298 (46%), Gaps = 20/298 (6%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE-DGVLSLP---TFASIFDSYC 158
           +   +G +L+   +  +++ + K G       A++++K+ DG L+ P    +++I D+ C
Sbjct: 153 KLLAQGFQLNQVGYGTLINGVCKIG---DTRAAIKLLKKIDGRLTKPDVVMYSTIIDALC 209

Query: 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDG 217
                 EA   F  M++ G+  DVV  N+L+   C    +   A+  LN  V K ++PD 
Sbjct: 210 KYQLVSEAYGLFSEMTVKGISADVVTYNTLIYGFC-IVGKLKEAIGLLNVMVLKTINPDV 268

Query: 218 DSFAILLEGWEKEGNVEEANKTFG-------EMVERFEWNPEHVLAYETFLITLIRGKQV 270
            ++ IL++   KEG V+EA +          EM +R +  P  V+ Y + +  L +   +
Sbjct: 269 YTYTILVDALCKEGKVKEAKRRISYVWDLIDEMRDRGQ--PADVITYSSLIDGLCKNGHL 326

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYN 330
           D A+     MK +   P +  F+  LD L K      A +++  ++  G++L  N+  YN
Sbjct: 327 DRAIALFNKMKDQGIRPNMFTFTILLDGLWKGGRLKDAQEVFQDLLTKGYHL--NVYTYN 384

Query: 331 AVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388
            +I   C    ++       +M  +G  P++ T+  I   L K     + EK   +MI
Sbjct: 385 VMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMI 442



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 85/181 (46%), Gaps = 13/181 (7%)

Query: 149 TFASIFDSYCGAGKYDEAV--MSF-----DVMSMHGVEQDVVAVNSLLSAICRQENQTSR 201
           T+  + D+ C  GK  EA   +S+     D M   G   DV+  +SL+  +C+      R
Sbjct: 270 TYTILVDALCKEGKVKEAKRRISYVWDLIDEMRDRGQPADVITYSSLIDGLCK-NGHLDR 328

Query: 202 ALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYET 259
           A+   N++K + + P+  +F ILL+G  K G +++A + F +++ + +  N   V  Y  
Sbjct: 329 AIALFNKMKDQGIRPNMFTFTILLDGLWKGGRLKDAQEVFQDLLTKGYHLN---VYTYNV 385

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG 319
            +    +   ++EAL  L  M+   C P    F   +  L K +++  A +L   M+  G
Sbjct: 386 MINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARG 445

Query: 320 F 320
            
Sbjct: 446 L 446



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 74/368 (20%), Positives = 142/368 (38%), Gaps = 58/368 (15%)

Query: 145 LSLPTFASIFDSYCGA---------GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
           LS+P F+S   +   +            D+AV  F+ M        ++  N +L +  + 
Sbjct: 13  LSIPNFSSFLQNSSHSHFHSQPPSIQNVDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKM 72

Query: 196 ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
           ++ ++ +L     +K I  PD  +  IL+  +   G +        ++++R    P   +
Sbjct: 73  KHYSTVSLSHRLELKGI-QPDLFTLNILINCFCHMGQITFGFSVLAKILKR--GYPPSTV 129

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
              T +  L    QV +AL F   +  +        +   ++ + K+ D+  A++L   +
Sbjct: 130 TLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVGYGTLINGVCKIGDTRAAIKLLKKI 189

Query: 316 VGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG-------------AF---- 358
            G      P+++MY+ +I  LC    V   +  F +M   G              F    
Sbjct: 190 DGRLTK--PDVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYNTLIYGFCIVG 247

Query: 359 ------------------PDSLTYNMIFECLIKNKRVHEVEK-------FFHEMIKNEWQ 393
                             PD  TY ++ + L K  +V E ++          EM ++  Q
Sbjct: 248 KLKEAIGLLNVMVLKTINPDVYTYTILVDALCKEGKVKEAKRRISYVWDLIDEM-RDRGQ 306

Query: 394 PTP-LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 452
           P   +  ++ I  L      + AI ++N + + GI P   +   LL GL   GRL D + 
Sbjct: 307 PADVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNMFTFTILLDGLWKGGRLKDAQE 366

Query: 453 FAEEMLNR 460
             +++L +
Sbjct: 367 VFQDLLTK 374



 Score = 41.6 bits (96), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 64/142 (45%), Gaps = 3/142 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RGQ      ++ ++D L KNG  ++       MK+ G+  ++ TF  + D     G+  +
Sbjct: 304 RGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNMFTFTILLDGLWKGGRLKD 363

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILL 224
           A   F  +   G   +V   N +++  C+Q      AL  L++++     P+  +F  ++
Sbjct: 364 AQEVFQDLLTKGYHLNVYTYNVMINGHCKQ-GLLEEALTMLSKMEDNGCIPNAFTFETII 422

Query: 225 EGWEKEGNVEEANKTFGEMVER 246
               K+   ++A K   +M+ R
Sbjct: 423 IALFKKDENDKAEKLLRQMIAR 444


>gi|255660868|gb|ACU25603.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
          Length = 484

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 100/399 (25%), Positives = 176/399 (44%), Gaps = 25/399 (6%)

Query: 77  IIPTPD--LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLM--VDVLGKNGRFEQM 132
           ++P+ D  LV+ VL  S  S   A+ FFRW  R           +  +++LG+  +    
Sbjct: 6   LVPSFDHELVYNVLHSSKTS-EHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +  M + G+      +  + DSY   G   E+V  F  M   GVE+ + + N+L   
Sbjct: 65  RCILLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKV 124

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           I R+         F   + + ++P   +F +++ G+   G VE AN+ F +M  R E +P
Sbjct: 125 ILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSR-EISP 183

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           + V+ Y T +    R K+++EA K+   MKG N  PT+  ++  +   V ++    A++L
Sbjct: 184 D-VVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242

Query: 312 WDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECL 371
            + M G G  + PN I Y+ ++  LCN + +        +M+     P   T N IF  L
Sbjct: 243 VEEMKGFG--IKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAP---TDNSIFMRL 297

Query: 372 I----KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 427
           I    K+  +         MI+        +    I     A + + A+++ + ++E  I
Sbjct: 298 ISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGLLIENFCKAGQYDKAVKLLDKLIEKDI 357

Query: 428 -------LPLEASA-NELLVGLRNLGRLSDVRRFAEEML 458
                  L LE SA N ++  L N G+ S       +++
Sbjct: 358 ILRPQSTLHLEPSAYNPMIEYLCNNGQASKAETLVRQLM 396



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 111/260 (42%), Gaps = 47/260 (18%)

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM----VERFEWNPEHVLAYETF 260
            L+  KK ++ D D + ++++ + KEG V+E+ K F +M    VER       + +Y   
Sbjct: 68  LLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVER------TIKSYNAL 121

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF 320
              ++R  +   A ++   M  E   PT   F+               V +W      GF
Sbjct: 122 FKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFN---------------VMIW------GF 160

Query: 321 NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEV 380
            L                +  V+   RFF+ M      PD +TYN +     + K++ E 
Sbjct: 161 FL----------------SGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEA 204

Query: 381 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 440
           EK+F EM     +PT +   T I   +  D+ + A+ +   +   GI P   + + LL G
Sbjct: 205 EKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPG 264

Query: 441 LRNLGRLSDVRRFAEEMLNR 460
           L N  ++S+ R   +EM+++
Sbjct: 265 LCNAEKMSEARVILKEMMDK 284



 Score = 41.6 bits (96), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 65/357 (18%), Positives = 127/357 (35%), Gaps = 79/357 (22%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++N +  V+ + GR+         M  +G+  +  TF  +   +  +GK + A   F+ M
Sbjct: 117 SYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDM 176

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
               +  DVV  N++++   R +        F+    + ++P   ++  L++G+     V
Sbjct: 177 KSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQV 236

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT----- 288
           ++A +   EM + F   P + + Y T L  L   +++ EA   L+ M  +   PT     
Sbjct: 237 DDALRLVEEM-KGFGIKP-NAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIF 294

Query: 289 ------------LKFFSNALDILVKLNDSTHA-------------------VQLWDIMVG 317
                       L   ++ L  +++L+  T A                   V+L D ++ 
Sbjct: 295 MRLISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGLLIENFCKAGQYDKAVKLLDKLIE 354

Query: 318 IGFNLMPNLIM------YNAVIGLLCNNDDV----------------------------- 342
               L P   +      YN +I  LCNN                                
Sbjct: 355 KDIILRPQSTLHLEPSAYNPMIEYLCNNGQASKAETLVRQLMKLGVQDPTALNTLIRGHS 414

Query: 343 -----DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 394
                D+ F     M+      +   YN++ +  +K     + +     MI+N+  P
Sbjct: 415 QEGSPDSAFELLKIMLRRKVDSEKSAYNLLVQSYLKKNEPXDAKAALDSMIENDHLP 471


>gi|297836398|ref|XP_002886081.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331921|gb|EFH62340.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 743

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 148/346 (42%), Gaps = 41/346 (11%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N +V    K G  ++ +  V +MK+  +L  L T+  + +  C AG   E +   DVM
Sbjct: 277 TYNNLVYGYCKLGSLKEAFQIVELMKQTNILPDLCTYNILINGVCNAGSIREGLELMDVM 336

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGN 232
               ++ DVV  N+L+   C +   +  A + + +++   V P+  +  I L+   KE  
Sbjct: 337 KSLKLQPDVVTYNTLIDG-CFELGLSLEAKKLMEQMENDGVKPNQVTHNISLKWLCKEEK 395

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
            EE  +   E+VE   ++P+ ++ Y T +   ++   +  AL+ +R M  +         
Sbjct: 396 REEVTRKVKELVEMHGFSPD-IVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITL 454

Query: 293 SNALDILVK---------LNDSTH--------------------------AVQLWDIMVG 317
           +  LD L K         L DS H                          A ++WD M  
Sbjct: 455 NTILDALCKERKVDEAHNLLDSAHKRGYIVDEVTYGTLIMGYFREEKVEKAFEMWDEMKR 514

Query: 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
           I   + P +  +N++IG LC++   +     FD++   G  PD  T+N I     K  RV
Sbjct: 515 I--KITPTVTTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDCTFNSIILGYCKEGRV 572

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 423
            +  +F++E IK+ ++P    C   +  L      E A+  +N ++
Sbjct: 573 EKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLI 618



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 85/359 (23%), Positives = 155/359 (43%), Gaps = 13/359 (3%)

Query: 145 LSLPTFASIFD----SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS 200
           LS P   ++FD    +Y  AGK   A+  F  M    ++ +++  N+LL  + R  +  S
Sbjct: 125 LSPPPSKALFDIALSAYLHAGKPHVALQVFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFS 184

Query: 201 RALE---FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
            A     F + VK  V  D  +F +L+ G+  EG +E+A      MV  F  NP++V  Y
Sbjct: 185 IASAREVFDDMVKIGVSLDVKTFNVLVNGYCLEGKLEDALGMLERMVSEFNVNPDNV-TY 243

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317
            T L  + +  ++ +    L  MK     P    ++N +    KL     A Q+ ++M  
Sbjct: 244 NTILKAMSKKGRLSDVKDLLLDMKRNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQ 303

Query: 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377
              N++P+L  YN +I  +CN   +       D M      PD +TYN + +   +    
Sbjct: 304 T--NILPDLCTYNILINGVCNAGSIREGLELMDVMKSLKLQPDVVTYNTLIDGCFELGLS 361

Query: 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE-PEIAIEIWNYILENGILPLEASANE 436
            E +K   +M  +  +P  +    ++  L   ++  E+  ++   +  +G  P   + + 
Sbjct: 362 LEAKKLMEQMENDGVKPNQVTHNISLKWLCKEEKREEVTRKVKELVEMHGFSPDIVTYHT 421

Query: 437 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLERR 493
           L+     +G LS       EM  + I +  +T++ +  A   E +     ++ DS  +R
Sbjct: 422 LIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKVDEAHNLLDSAHKR 480



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/345 (21%), Positives = 154/345 (44%), Gaps = 8/345 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N ++  + K GR   + + +  MK +G++ +  T+ ++   YC  G   EA    ++M
Sbjct: 242 TYNTILKAMSKKGRLSDVKDLLLDMKRNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELM 301

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGN 232
               +  D+   N L++ +C         LE ++ +K + + PD  ++  L++G  + G 
Sbjct: 302 KQTNILPDLCTYNILINGVCNA-GSIREGLELMDVMKSLKLQPDVVTYNTLIDGCFELGL 360

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF-PTLKF 291
             EA K   +M E     P  V  +   L  L + ++ +E  + ++ +   + F P +  
Sbjct: 361 SLEAKKLMEQM-ENDGVKPNQV-THNISLKWLCKEEKREEVTRKVKELVEMHGFSPDIVT 418

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           +   +   +K+ D + A+++   M   G  +  N I  N ++  LC    VD      D 
Sbjct: 419 YHTLIKAYLKVGDLSGALEMMREMGQKGIKM--NTITLNTILDALCKERKVDEAHNLLDS 476

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
               G   D +TY  +     + ++V +  + + EM + +  PT     + I  L    +
Sbjct: 477 AHKRGYIVDEVTYGTLIMGYFREEKVEKAFEMWDEMKRIKITPTVTTFNSLIGGLCHHGK 536

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 456
            E+A+E ++ + E+G+LP + + N +++G    GR+     F  E
Sbjct: 537 TELAMEKFDELAESGLLPDDCTFNSIILGYCKEGRVEKAFEFYNE 581



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 7/158 (4%)

Query: 131 QMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS 190
           +MW+ ++ +K    ++  TF S+    C  GK + A+  FD ++  G+  D    NS++ 
Sbjct: 507 EMWDEMKRIKITPTVT--TFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDCTFNSIIL 564

Query: 191 AICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW 249
             C+ E +  +A EF N  +K    PD  +  ILL G  KEG  E+A   F  ++   E 
Sbjct: 565 GYCK-EGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLITEREV 623

Query: 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
           +    + Y T +    + K++ EA   L  M+ +   P
Sbjct: 624 D---TVTYNTMISAFCKDKKLKEAYDLLSEMEEKRLEP 658



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 69/337 (20%), Positives = 135/337 (40%), Gaps = 55/337 (16%)

Query: 80  TPDLV--HEVLQ--LSYDSPSSAVDFFRWAG-RGQRLSPYAWNLMVDVLGKNGRFEQMWN 134
           +PD+V  H +++  L     S A++  R  G +G +++    N ++D L K  + ++  N
Sbjct: 413 SPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKVDEAHN 472

Query: 135 AVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC 193
            +    + G ++   T+ ++   Y    K ++A   +D M    +   V   NSL+  +C
Sbjct: 473 LLDSAHKRGYIVDEVTYGTLIMGYFREEKVEKAFEMWDEMKRIKITPTVTTFNSLIGGLC 532

Query: 194 RQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
               +T  A+E  + + +  + PD  +F  ++ G+ KEG VE+A + + E + +  + P+
Sbjct: 533 HH-GKTELAMEKFDELAESGLLPDDCTFNSIILGYCKEGRVEKAFEFYNESI-KHSFKPD 590

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
           +       L  L +    ++AL F   +  E    T                        
Sbjct: 591 NYTC-NILLNGLCKEGMTEKALNFFNTLITEREVDT------------------------ 625

Query: 313 DIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 372
                         + YN +I   C +  +   +    +M      PD  TYN I   L+
Sbjct: 626 --------------VTYNTMISAFCKDKKLKEAYDLLSEMEEKRLEPDRFTYNSIITSLM 671

Query: 373 KNKRVHEVEKF-------FHEMIKNEWQPTPLNCATA 402
           ++ ++ E ++        F  M +N    T  N AT+
Sbjct: 672 EDGKLSEADELLKKFSGKFGSMKRNLHLETEKNPATS 708


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.322    0.136    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,832,390,239
Number of Sequences: 23463169
Number of extensions: 332225169
Number of successful extensions: 973277
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3418
Number of HSP's successfully gapped in prelim test: 3459
Number of HSP's that attempted gapping in prelim test: 891766
Number of HSP's gapped (non-prelim): 34984
length of query: 499
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 352
effective length of database: 8,910,109,524
effective search space: 3136358552448
effective search space used: 3136358552448
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 79 (35.0 bits)