BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010830
         (499 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1DEQ|C Chain C, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
           Angstrom Resolution)
 pdb|1DEQ|F Chain F, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
           Angstrom Resolution)
 pdb|1DEQ|P Chain P, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
           Angstrom Resolution)
 pdb|1DEQ|S Chain S, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
           Angstrom Resolution)
          Length = 411

 Score = 28.5 bits (62), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 19/86 (22%)

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
           V++D+  +  +L  +   EN+TS A E +  ++   +PD  S         K  N+E A 
Sbjct: 36  VDKDLRTLEGILYQV---ENKTSEARELVKAIQISYNPDQPS---------KPNNIESAT 83

Query: 238 KTFGEMVERFEWNPEHVLAYETFLIT 263
           K    M+E        ++ YET + T
Sbjct: 84  KNSKSMMEE-------IMKYETLIST 102


>pdb|2WPN|A Chain A, Structure Of The Oxidised, As-Isolated Nifese Hydrogenase
           From D. Vulgaris Hildenborough
          Length = 317

 Score = 28.5 bits (62), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 2/77 (2%)

Query: 118 LMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGA-GKYDEAVMSFDVMSMH 176
           L +D + KNG    +   V+V+  DG    P F       C    KYDE VMS       
Sbjct: 206 LALDAIKKNGLEGGLAEVVKVLDSDG-RPTPFFGRNIHENCPYLDKYDEGVMSATFTDKV 264

Query: 177 GVEQDVVAVNSLLSAIC 193
           G   D+     +  A C
Sbjct: 265 GCRYDLGCKGPMTMADC 281


>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
           Reveals Structural Similarities To Importin Alpha.
 pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
           Reveals Structural Similarities To Importin Alpha
          Length = 388

 Score = 28.5 bits (62), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 3/86 (3%)

Query: 189 LSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFE 248
           L+   +++   + A +  N   ++     DS   L     ++GN+EEA + + + +E F 
Sbjct: 277 LANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF- 335

Query: 249 WNPEHVLAYETFLITLIRGKQVDEAL 274
             PE   A+      L +  ++ EAL
Sbjct: 336 --PEFAAAHSNLASVLQQQGKLQEAL 359


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.137    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,277,391
Number of Sequences: 62578
Number of extensions: 520533
Number of successful extensions: 1256
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1256
Number of HSP's gapped (non-prelim): 12
length of query: 499
length of database: 14,973,337
effective HSP length: 103
effective length of query: 396
effective length of database: 8,527,803
effective search space: 3377009988
effective search space used: 3377009988
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)