Query 010830
Match_columns 499
No_of_seqs 664 out of 3365
Neff 11.3
Searched_HMMs 46136
Date Fri Mar 29 05:02:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010830.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010830hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 2.2E-63 4.8E-68 507.5 55.6 427 64-497 388-845 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 1.3E-62 2.9E-67 501.8 55.0 411 79-497 368-787 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 3.8E-62 8.2E-67 496.0 45.2 407 66-491 107-521 (697)
4 PLN03081 pentatricopeptide (PP 100.0 4.3E-59 9.4E-64 473.6 45.5 410 66-495 143-559 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 3.1E-59 6.8E-64 485.8 42.2 408 64-491 69-482 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 1.2E-58 2.5E-63 481.5 42.5 409 66-491 172-616 (857)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.6E-25 3.4E-30 238.3 51.4 385 92-491 512-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.2E-24 2.7E-29 231.4 52.8 386 93-493 479-866 (899)
9 PRK11788 tetratricopeptide rep 99.9 1.2E-22 2.6E-27 194.2 34.8 310 76-396 32-353 (389)
10 PRK11788 tetratricopeptide rep 99.9 1.1E-21 2.4E-26 187.6 35.6 304 122-467 44-354 (389)
11 PRK15174 Vi polysaccharide exp 99.9 1.7E-18 3.8E-23 173.6 44.1 371 90-472 53-432 (656)
12 KOG4626 O-linked N-acetylgluco 99.9 1.3E-19 2.7E-24 166.3 30.9 355 110-482 113-506 (966)
13 PRK11447 cellulose synthase su 99.9 1E-17 2.2E-22 179.6 50.5 388 90-492 280-739 (1157)
14 KOG4626 O-linked N-acetylgluco 99.9 1.1E-18 2.3E-23 160.3 35.5 334 91-440 128-499 (966)
15 TIGR00990 3a0801s09 mitochondr 99.9 2.5E-17 5.5E-22 165.9 48.8 393 90-493 138-571 (615)
16 PRK15174 Vi polysaccharide exp 99.9 1.6E-17 3.4E-22 166.8 46.2 309 71-391 68-382 (656)
17 PRK11447 cellulose synthase su 99.9 3.2E-17 7E-22 175.8 50.4 355 124-494 280-701 (1157)
18 PRK10049 pgaA outer membrane p 99.9 1.2E-16 2.7E-21 163.8 46.9 392 90-493 26-456 (765)
19 PRK10049 pgaA outer membrane p 99.8 2.1E-16 4.6E-21 162.1 43.4 376 89-475 59-469 (765)
20 PRK14574 hmsH outer membrane p 99.8 6.4E-15 1.4E-19 148.5 48.8 192 295-490 298-510 (822)
21 TIGR00990 3a0801s09 mitochondr 99.8 1.3E-15 2.7E-20 153.6 44.2 376 76-460 155-571 (615)
22 KOG4422 Uncharacterized conser 99.8 1.3E-14 2.8E-19 128.1 41.5 416 54-478 120-608 (625)
23 PRK14574 hmsH outer membrane p 99.8 1.6E-13 3.5E-18 138.5 48.1 374 90-470 79-521 (822)
24 PRK09782 bacteriophage N4 rece 99.7 1.3E-12 2.9E-17 134.8 48.2 147 90-245 89-275 (987)
25 KOG4422 Uncharacterized conser 99.7 3.3E-13 7E-18 119.4 36.6 367 77-451 203-616 (625)
26 PRK09782 bacteriophage N4 rece 99.7 2.8E-12 6.1E-17 132.4 48.5 385 90-492 193-705 (987)
27 KOG2076 RNA polymerase III tra 99.7 4E-12 8.6E-17 122.8 38.9 365 90-459 150-554 (895)
28 PRK10747 putative protoheme IX 99.7 9E-13 1.9E-17 125.0 33.9 283 160-459 97-389 (398)
29 PRK10747 putative protoheme IX 99.7 2.4E-12 5.2E-17 122.1 36.2 286 126-424 97-389 (398)
30 PF13429 TPR_15: Tetratricopep 99.6 1.5E-15 3.3E-20 137.6 13.1 253 90-353 19-275 (280)
31 KOG2002 TPR-containing nuclear 99.6 4.7E-12 1E-16 123.2 37.1 391 95-494 252-710 (1018)
32 TIGR00540 hemY_coli hemY prote 99.6 1.6E-12 3.4E-17 124.1 32.9 293 158-459 95-398 (409)
33 KOG2076 RNA polymerase III tra 99.6 2.3E-11 4.9E-16 117.7 40.1 357 119-482 145-542 (895)
34 KOG2003 TPR repeat-containing 99.6 1.6E-12 3.4E-17 116.0 28.9 214 268-490 504-719 (840)
35 KOG1915 Cell cycle control pro 99.6 8.3E-11 1.8E-15 105.8 39.5 392 92-494 86-537 (677)
36 PF13429 TPR_15: Tetratricopep 99.6 5E-15 1.1E-19 134.2 13.1 259 154-422 15-274 (280)
37 TIGR00540 hemY_coli hemY prote 99.6 7.7E-12 1.7E-16 119.3 35.0 289 124-423 95-397 (409)
38 COG2956 Predicted N-acetylgluc 99.6 8.2E-12 1.8E-16 106.8 29.5 293 126-460 48-347 (389)
39 KOG1126 DNA-binding cell divis 99.6 6.3E-12 1.4E-16 117.8 31.0 282 94-389 334-619 (638)
40 KOG1155 Anaphase-promoting com 99.6 1E-10 2.2E-15 105.0 36.9 355 108-477 159-551 (559)
41 KOG2002 TPR-containing nuclear 99.6 2.6E-11 5.7E-16 118.1 34.4 376 91-472 319-757 (1018)
42 COG2956 Predicted N-acetylgluc 99.6 3.5E-11 7.6E-16 103.0 31.0 301 79-390 35-347 (389)
43 COG3071 HemY Uncharacterized e 99.6 4E-11 8.6E-16 105.9 32.1 286 160-460 97-390 (400)
44 KOG0495 HAT repeat protein [RN 99.6 1.4E-09 3E-14 101.9 43.1 377 93-482 420-867 (913)
45 KOG1126 DNA-binding cell divis 99.5 4E-12 8.6E-17 119.1 25.2 287 162-465 334-625 (638)
46 KOG1915 Cell cycle control pro 99.5 2.1E-09 4.6E-14 97.0 39.4 354 92-461 154-537 (677)
47 COG3071 HemY Uncharacterized e 99.5 9.5E-10 2.1E-14 97.3 36.6 295 117-424 86-389 (400)
48 KOG0495 HAT repeat protein [RN 99.5 7.5E-09 1.6E-13 97.1 42.4 374 92-482 389-769 (913)
49 KOG1156 N-terminal acetyltrans 99.5 5.2E-09 1.1E-13 98.1 39.5 410 68-494 30-512 (700)
50 KOG2003 TPR repeat-containing 99.5 5.4E-11 1.2E-15 106.4 25.5 278 122-411 428-709 (840)
51 KOG1155 Anaphase-promoting com 99.5 4.8E-10 1E-14 100.8 29.9 286 125-423 239-534 (559)
52 PRK12370 invasion protein regu 99.4 2.9E-10 6.2E-15 112.9 30.6 273 138-426 247-536 (553)
53 TIGR02521 type_IV_pilW type IV 99.4 1.8E-10 3.9E-15 101.7 26.0 200 112-317 30-231 (234)
54 KOG1173 Anaphase-promoting com 99.4 3.7E-10 8E-15 104.0 27.6 271 92-372 257-533 (611)
55 KOG4318 Bicoid mRNA stability 99.4 1E-11 2.2E-16 119.6 17.9 274 134-446 11-286 (1088)
56 KOG4318 Bicoid mRNA stability 99.4 1.1E-10 2.3E-15 112.7 24.7 336 108-482 20-395 (1088)
57 KOG0547 Translocase of outer m 99.4 4.8E-09 1E-13 95.1 33.4 379 91-493 127-566 (606)
58 PRK12370 invasion protein regu 99.4 4.9E-10 1.1E-14 111.2 29.3 267 181-461 255-536 (553)
59 TIGR02521 type_IV_pilW type IV 99.4 5.8E-10 1.2E-14 98.4 26.0 197 220-423 34-230 (234)
60 KOG1173 Anaphase-promoting com 99.4 5.5E-09 1.2E-13 96.5 32.0 288 180-479 242-535 (611)
61 PF13041 PPR_2: PPR repeat fam 99.4 1.7E-12 3.7E-17 82.6 6.2 49 324-372 1-49 (50)
62 PF13041 PPR_2: PPR repeat fam 99.4 2E-12 4.2E-17 82.4 6.2 50 429-478 1-50 (50)
63 PF12569 NARP1: NMDA receptor- 99.4 5.1E-09 1.1E-13 100.5 32.1 289 192-494 14-335 (517)
64 PF12569 NARP1: NMDA receptor- 99.3 6.7E-09 1.5E-13 99.7 32.1 292 120-423 11-332 (517)
65 KOG1129 TPR repeat-containing 99.3 2.3E-09 5E-14 92.2 24.6 230 151-390 227-458 (478)
66 KOG1129 TPR repeat-containing 99.3 1.9E-09 4.1E-14 92.7 22.3 234 216-460 222-458 (478)
67 KOG2047 mRNA splicing factor [ 99.2 3E-06 6.6E-11 80.0 40.7 266 219-493 389-719 (835)
68 KOG1156 N-terminal acetyltrans 99.2 9.7E-07 2.1E-11 83.3 37.4 388 82-482 9-455 (700)
69 KOG2376 Signal recognition par 99.2 4.6E-07 1E-11 84.5 34.9 386 81-482 13-508 (652)
70 KOG1840 Kinesin light chain [C 99.2 8.3E-09 1.8E-13 97.9 24.4 239 149-388 201-477 (508)
71 KOG0547 Translocase of outer m 99.2 9.7E-09 2.1E-13 93.2 23.0 155 89-245 336-490 (606)
72 KOG1840 Kinesin light chain [C 99.2 3.5E-08 7.7E-13 93.7 27.8 243 216-458 198-477 (508)
73 KOG3785 Uncharacterized conser 99.2 2.5E-07 5.3E-12 80.9 29.3 377 92-491 70-488 (557)
74 cd05804 StaR_like StaR_like; a 99.2 6.2E-07 1.3E-11 84.7 34.8 200 113-317 6-214 (355)
75 COG3063 PilF Tfp pilus assembl 99.2 7.2E-08 1.6E-12 79.3 24.0 198 115-318 37-236 (250)
76 KOG1174 Anaphase-promoting com 99.1 2.1E-07 4.6E-12 82.9 28.2 266 145-424 230-499 (564)
77 PRK11189 lipoprotein NlpI; Pro 99.1 8.7E-08 1.9E-12 87.2 26.9 188 90-284 75-266 (296)
78 KOG1174 Anaphase-promoting com 99.1 9.9E-07 2.2E-11 78.8 32.0 289 160-461 209-501 (564)
79 PRK11189 lipoprotein NlpI; Pro 99.1 1.3E-07 2.9E-12 86.0 27.5 96 219-318 66-161 (296)
80 cd05804 StaR_like StaR_like; a 99.1 9.4E-07 2E-11 83.4 34.0 306 147-459 6-335 (355)
81 KOG2047 mRNA splicing factor [ 99.1 1.1E-05 2.4E-10 76.3 38.9 322 93-427 116-508 (835)
82 KOG3785 Uncharacterized conser 99.1 3.3E-07 7.1E-12 80.1 26.0 330 111-461 118-491 (557)
83 COG3063 PilF Tfp pilus assembl 99.1 2.5E-07 5.5E-12 76.2 23.4 194 188-389 41-235 (250)
84 KOG4162 Predicted calmodulin-b 99.1 7.8E-06 1.7E-10 79.0 36.9 376 108-492 318-782 (799)
85 KOG1914 mRNA cleavage and poly 99.1 5E-06 1.1E-10 77.0 33.9 376 108-491 15-499 (656)
86 PF04733 Coatomer_E: Coatomer 99.0 1.3E-07 2.8E-12 84.8 19.7 151 262-424 110-264 (290)
87 KOG0624 dsRNA-activated protei 99.0 2E-05 4.3E-10 69.0 31.9 192 223-424 161-369 (504)
88 KOG4340 Uncharacterized conser 98.9 1.1E-05 2.3E-10 69.3 28.6 318 93-423 24-373 (459)
89 KOG4162 Predicted calmodulin-b 98.9 5.5E-05 1.2E-09 73.4 36.0 378 77-460 319-783 (799)
90 KOG1914 mRNA cleavage and poly 98.9 6E-05 1.3E-09 70.1 35.6 174 305-482 347-526 (656)
91 PF04733 Coatomer_E: Coatomer 98.9 1.9E-07 4.1E-12 83.7 18.0 150 225-389 110-264 (290)
92 KOG4340 Uncharacterized conser 98.9 3.4E-06 7.5E-11 72.2 24.2 294 115-422 12-336 (459)
93 PRK04841 transcriptional regul 98.9 1.7E-05 3.6E-10 85.0 36.0 339 156-495 383-762 (903)
94 KOG0548 Molecular co-chaperone 98.8 5.8E-05 1.3E-09 70.2 32.2 374 90-478 13-471 (539)
95 KOG1070 rRNA processing protei 98.8 4.5E-06 9.8E-11 85.5 27.3 227 250-482 1454-1687(1710)
96 PRK04841 transcriptional regul 98.8 0.00012 2.6E-09 78.5 39.1 338 122-460 383-760 (903)
97 PF12854 PPR_1: PPR repeat 98.8 9.9E-09 2.1E-13 58.5 3.9 34 425-458 1-34 (34)
98 KOG0985 Vesicle coat protein c 98.8 0.00029 6.4E-09 70.5 36.3 295 110-457 981-1305(1666)
99 KOG2376 Signal recognition par 98.8 0.00015 3.2E-09 68.3 32.6 357 115-497 14-450 (652)
100 KOG1125 TPR repeat-containing 98.7 2.8E-06 6E-11 79.4 21.0 248 193-451 296-562 (579)
101 PLN02789 farnesyltranstransfer 98.7 2.4E-05 5.3E-10 71.2 26.3 138 122-264 46-186 (320)
102 KOG1125 TPR repeat-containing 98.7 3.9E-06 8.4E-11 78.5 20.9 218 91-316 297-525 (579)
103 PF12854 PPR_1: PPR repeat 98.7 2.5E-08 5.4E-13 56.8 4.2 32 356-387 2-33 (34)
104 TIGR03302 OM_YfiO outer membra 98.7 4E-06 8.6E-11 74.0 20.2 187 110-318 30-232 (235)
105 PLN02789 farnesyltranstransfer 98.7 4.4E-05 9.6E-10 69.5 26.7 118 197-318 51-171 (320)
106 KOG1070 rRNA processing protei 98.7 1.9E-05 4.2E-10 81.1 26.0 242 136-387 1447-1697(1710)
107 COG5010 TadD Flp pilus assembl 98.6 1E-05 2.2E-10 68.4 18.8 152 91-244 78-229 (257)
108 KOG3617 WD40 and TPR repeat-co 98.6 0.00027 5.9E-09 69.2 30.4 243 78-354 723-995 (1416)
109 TIGR03302 OM_YfiO outer membra 98.6 1.3E-05 2.8E-10 70.7 20.7 63 146-211 32-98 (235)
110 KOG3617 WD40 and TPR repeat-co 98.6 4.2E-05 9.1E-10 74.6 24.7 245 108-389 721-995 (1416)
111 KOG0548 Molecular co-chaperone 98.6 0.00047 1E-08 64.4 29.8 330 121-460 10-421 (539)
112 KOG0624 dsRNA-activated protei 98.6 0.00045 9.7E-09 60.8 28.6 299 146-461 37-371 (504)
113 COG5010 TadD Flp pilus assembl 98.6 1.8E-05 3.9E-10 67.0 18.8 158 151-314 70-227 (257)
114 KOG3081 Vesicle coat complex C 98.6 0.00011 2.4E-09 62.3 23.0 150 262-424 116-270 (299)
115 KOG0985 Vesicle coat protein c 98.6 0.00026 5.6E-09 70.8 29.1 357 67-456 345-749 (1666)
116 KOG3081 Vesicle coat complex C 98.6 9.2E-05 2E-09 62.8 22.6 244 197-460 22-271 (299)
117 PRK14720 transcript cleavage f 98.6 7.8E-05 1.7E-09 75.9 26.5 172 109-318 27-198 (906)
118 KOG1128 Uncharacterized conser 98.5 9.1E-06 2E-10 78.1 18.3 219 111-354 396-615 (777)
119 COG4783 Putative Zn-dependent 98.5 0.00012 2.7E-09 67.5 24.7 218 232-476 252-472 (484)
120 PRK14720 transcript cleavage f 98.5 6.5E-05 1.4E-09 76.4 25.1 167 182-389 31-197 (906)
121 KOG1128 Uncharacterized conser 98.5 4.6E-05 9.9E-10 73.5 22.3 233 149-406 400-633 (777)
122 KOG1127 TPR repeat-containing 98.5 0.00011 2.4E-09 73.3 25.3 186 93-282 472-658 (1238)
123 PRK10370 formate-dependent nit 98.5 3.2E-05 7E-10 65.5 19.3 118 197-318 53-173 (198)
124 PRK15179 Vi polysaccharide bio 98.5 8.3E-05 1.8E-09 74.9 24.4 238 111-374 26-268 (694)
125 PRK10370 formate-dependent nit 98.4 1.2E-05 2.6E-10 68.0 15.2 118 126-245 52-172 (198)
126 KOG3616 Selective LIM binding 98.4 0.0012 2.6E-08 64.1 29.5 108 335-455 741-848 (1636)
127 KOG3616 Selective LIM binding 98.4 0.00035 7.5E-09 67.6 24.4 43 367-418 888-930 (1636)
128 COG4783 Putative Zn-dependent 98.4 0.00016 3.5E-09 66.7 21.5 117 197-317 320-436 (484)
129 PRK15179 Vi polysaccharide bio 98.4 8.6E-05 1.9E-09 74.8 21.7 185 106-301 79-267 (694)
130 PRK15359 type III secretion sy 98.4 4.7E-05 1E-09 60.9 16.1 47 197-243 72-118 (144)
131 PRK15359 type III secretion sy 98.3 3.3E-05 7.1E-10 61.8 14.0 91 119-211 30-120 (144)
132 TIGR02552 LcrH_SycD type III s 98.3 5.7E-05 1.2E-09 60.0 14.5 92 150-243 20-111 (135)
133 KOG3060 Uncharacterized conser 98.2 0.0011 2.4E-08 56.0 21.5 83 268-354 100-182 (289)
134 TIGR00756 PPR pentatricopeptid 98.2 2.2E-06 4.7E-11 49.7 4.0 33 328-360 2-34 (35)
135 TIGR00756 PPR pentatricopeptid 98.2 2.2E-06 4.7E-11 49.7 4.0 33 433-465 2-34 (35)
136 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 5.8E-05 1.2E-09 70.2 15.2 127 147-281 169-295 (395)
137 KOG1127 TPR repeat-containing 98.2 0.0067 1.5E-07 61.2 29.2 176 68-245 478-658 (1238)
138 TIGR02552 LcrH_SycD type III s 98.2 0.00011 2.3E-09 58.4 14.4 103 107-211 11-113 (135)
139 PF10037 MRP-S27: Mitochondria 98.2 3.3E-05 7.2E-10 72.1 12.9 123 357-479 62-186 (429)
140 PF13812 PPR_3: Pentatricopept 98.2 3.1E-06 6.6E-11 48.6 4.0 33 148-180 2-34 (34)
141 KOG3060 Uncharacterized conser 98.2 0.0018 3.9E-08 54.8 21.3 129 149-282 54-182 (289)
142 PF13812 PPR_3: Pentatricopept 98.1 4.5E-06 9.7E-11 47.9 4.3 33 432-464 2-34 (34)
143 KOG2053 Mitochondrial inherita 98.1 0.014 3.1E-07 58.3 41.7 214 67-284 31-256 (932)
144 PF08579 RPM2: Mitochondrial r 98.1 5.6E-05 1.2E-09 55.1 9.6 79 401-479 30-117 (120)
145 PF10037 MRP-S27: Mitochondria 98.1 7.6E-05 1.7E-09 69.7 13.1 134 239-374 50-186 (429)
146 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00019 4.2E-09 66.8 15.4 124 220-353 172-295 (395)
147 PF09976 TPR_21: Tetratricopep 98.1 0.00049 1.1E-08 55.3 16.0 125 115-242 14-143 (145)
148 PF09976 TPR_21: Tetratricopep 98.0 0.00054 1.2E-08 55.0 15.0 117 230-350 24-142 (145)
149 PF08579 RPM2: Mitochondrial r 98.0 0.00011 2.5E-09 53.6 9.7 75 333-407 32-115 (120)
150 PF04840 Vps16_C: Vps16, C-ter 98.0 0.014 3E-07 53.3 26.3 126 328-479 179-304 (319)
151 PRK10866 outer membrane biogen 97.9 0.011 2.3E-07 52.0 23.5 184 112-316 31-239 (243)
152 PF01535 PPR: PPR repeat; Int 97.9 1.4E-05 3.1E-10 44.6 3.2 29 433-461 2-30 (31)
153 PF01535 PPR: PPR repeat; Int 97.9 1.9E-05 4.1E-10 44.1 3.5 29 328-356 2-30 (31)
154 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00079 1.7E-08 51.9 13.7 100 219-318 4-105 (119)
155 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00067 1.4E-08 52.3 12.9 58 117-174 6-66 (119)
156 COG3898 Uncharacterized membra 97.8 0.024 5.2E-07 51.3 29.0 321 85-426 59-393 (531)
157 PF05843 Suf: Suppressor of fo 97.8 0.00037 8.1E-09 62.7 12.3 129 149-282 3-135 (280)
158 PF05843 Suf: Suppressor of fo 97.8 0.00063 1.4E-08 61.3 13.7 131 114-246 2-136 (280)
159 KOG2053 Mitochondrial inherita 97.8 0.057 1.2E-06 54.2 41.3 222 92-319 22-256 (932)
160 PF06239 ECSIT: Evolutionarily 97.7 0.00062 1.3E-08 56.4 11.5 106 358-482 44-154 (228)
161 cd00189 TPR Tetratricopeptide 97.7 0.00065 1.4E-08 49.6 11.1 56 119-174 6-61 (100)
162 PRK10866 outer membrane biogen 97.7 0.014 2.9E-07 51.3 20.3 59 222-283 37-98 (243)
163 PF14938 SNAP: Soluble NSF att 97.7 0.012 2.6E-07 53.3 20.7 208 115-353 37-264 (282)
164 PF14938 SNAP: Soluble NSF att 97.7 0.017 3.7E-07 52.3 21.4 191 224-449 42-252 (282)
165 cd00189 TPR Tetratricopeptide 97.6 0.00093 2E-08 48.7 10.6 92 150-243 3-94 (100)
166 PF14559 TPR_19: Tetratricopep 97.6 0.00025 5.5E-09 48.3 6.8 64 124-189 2-65 (68)
167 PRK15363 pathogenicity island 97.6 0.0021 4.6E-08 50.8 12.4 93 222-318 40-132 (157)
168 PF06239 ECSIT: Evolutionarily 97.6 0.0023 5E-08 53.1 12.2 86 325-410 46-152 (228)
169 PLN03088 SGT1, suppressor of 97.5 0.0013 2.9E-08 61.4 12.2 97 91-189 14-110 (356)
170 PRK02603 photosystem I assembl 97.5 0.0069 1.5E-07 50.2 15.2 91 253-346 34-126 (172)
171 PLN03088 SGT1, suppressor of 97.5 0.0017 3.7E-08 60.7 12.7 83 197-282 16-98 (356)
172 PRK15363 pathogenicity island 97.5 0.018 3.8E-07 45.7 16.0 88 156-245 44-131 (157)
173 PF13525 YfiO: Outer membrane 97.5 0.022 4.7E-07 48.7 18.1 59 224-282 12-70 (203)
174 PRK10153 DNA-binding transcrip 97.5 0.0093 2E-07 58.5 17.4 146 212-390 332-482 (517)
175 PRK02603 photosystem I assembl 97.5 0.0077 1.7E-07 50.0 14.7 64 113-176 35-101 (172)
176 PF12895 Apc3: Anaphase-promot 97.4 0.00036 7.8E-09 49.9 5.6 20 223-242 31-50 (84)
177 PF13432 TPR_16: Tetratricopep 97.4 0.00077 1.7E-08 45.4 6.6 58 119-176 3-60 (65)
178 PF14559 TPR_19: Tetratricopep 97.4 0.00066 1.4E-08 46.2 6.2 50 230-282 4-53 (68)
179 KOG2796 Uncharacterized conser 97.4 0.064 1.4E-06 46.0 18.5 130 150-283 180-315 (366)
180 PF13525 YfiO: Outer membrane 97.3 0.023 4.9E-07 48.6 16.4 180 116-308 8-197 (203)
181 KOG0553 TPR repeat-containing 97.3 0.015 3.3E-07 50.8 14.9 99 193-297 92-190 (304)
182 KOG2041 WD40 repeat protein [G 97.3 0.19 4.1E-06 49.2 25.9 121 109-241 688-820 (1189)
183 CHL00033 ycf3 photosystem I as 97.3 0.0043 9.3E-08 51.3 11.6 44 219-265 74-117 (168)
184 PF12895 Apc3: Anaphase-promot 97.3 0.00069 1.5E-08 48.4 5.8 80 161-242 3-83 (84)
185 PF13432 TPR_16: Tetratricopep 97.3 0.0012 2.6E-08 44.4 6.7 56 224-282 4-59 (65)
186 KOG0550 Molecular chaperone (D 97.3 0.076 1.6E-06 48.6 19.3 176 297-482 177-373 (486)
187 KOG0550 Molecular chaperone (D 97.3 0.15 3.2E-06 46.9 21.2 222 93-317 63-315 (486)
188 PF07079 DUF1347: Protein of u 97.3 0.16 3.6E-06 47.2 36.2 220 93-317 59-326 (549)
189 CHL00033 ycf3 photosystem I as 97.3 0.011 2.4E-07 48.8 13.3 64 113-176 35-101 (168)
190 PF12688 TPR_5: Tetratrico pep 97.2 0.028 6E-07 42.9 13.8 55 121-175 9-66 (120)
191 COG3898 Uncharacterized membra 97.2 0.17 3.6E-06 46.2 33.1 309 130-460 70-392 (531)
192 COG4700 Uncharacterized protei 97.2 0.085 1.8E-06 42.8 17.8 132 322-457 85-219 (251)
193 PF13414 TPR_11: TPR repeat; P 97.2 0.002 4.3E-08 43.9 6.8 64 112-175 2-66 (69)
194 COG4235 Cytochrome c biogenesi 97.2 0.018 3.9E-07 50.6 13.9 126 238-369 140-268 (287)
195 PRK10153 DNA-binding transcrip 97.1 0.031 6.7E-07 54.9 17.1 137 178-317 333-481 (517)
196 PF04840 Vps16_C: Vps16, C-ter 97.1 0.22 4.8E-06 45.5 22.7 111 219-353 179-289 (319)
197 PF13414 TPR_11: TPR repeat; P 97.1 0.0039 8.5E-08 42.5 7.5 64 216-282 2-66 (69)
198 PRK10803 tol-pal system protei 97.1 0.015 3.1E-07 51.6 12.6 88 228-318 154-246 (263)
199 KOG1538 Uncharacterized conser 97.0 0.32 6.9E-06 47.4 21.6 56 325-389 746-801 (1081)
200 PF12688 TPR_5: Tetratrico pep 97.0 0.061 1.3E-06 41.0 14.1 56 262-317 9-66 (120)
201 KOG2041 WD40 repeat protein [G 97.0 0.39 8.5E-06 47.2 24.4 106 149-279 798-903 (1189)
202 KOG1130 Predicted G-alpha GTPa 97.0 0.018 3.9E-07 52.4 12.8 267 121-389 25-343 (639)
203 COG4235 Cytochrome c biogenesi 97.0 0.042 9.1E-07 48.3 14.6 109 136-245 145-255 (287)
204 PF12921 ATP13: Mitochondrial 96.9 0.021 4.6E-07 44.0 11.0 103 360-482 1-104 (126)
205 PF13371 TPR_9: Tetratricopept 96.9 0.0066 1.4E-07 41.9 7.7 63 120-184 2-64 (73)
206 PF03704 BTAD: Bacterial trans 96.9 0.0061 1.3E-07 49.0 8.5 70 115-184 64-138 (146)
207 KOG1258 mRNA processing protei 96.8 0.53 1.1E-05 45.6 33.9 85 92-176 92-180 (577)
208 KOG0553 TPR repeat-containing 96.8 0.014 3E-07 51.0 10.1 92 93-186 95-186 (304)
209 PF03704 BTAD: Bacterial trans 96.8 0.055 1.2E-06 43.4 13.2 56 295-353 68-123 (146)
210 PF07079 DUF1347: Protein of u 96.8 0.45 9.9E-06 44.4 31.0 136 91-230 18-180 (549)
211 KOG1130 Predicted G-alpha GTPa 96.8 0.022 4.8E-07 51.9 11.4 265 155-423 25-342 (639)
212 KOG2796 Uncharacterized conser 96.8 0.3 6.6E-06 42.0 18.9 132 328-460 179-315 (366)
213 COG5107 RNA14 Pre-mRNA 3'-end 96.8 0.47 1E-05 44.2 28.1 95 98-195 28-122 (660)
214 COG4700 Uncharacterized protei 96.7 0.24 5.1E-06 40.3 20.2 131 285-421 85-218 (251)
215 PRK10803 tol-pal system protei 96.7 0.052 1.1E-06 48.1 13.1 57 189-246 187-246 (263)
216 PF09205 DUF1955: Domain of un 96.7 0.16 3.5E-06 38.6 13.3 139 301-463 14-152 (161)
217 PF12921 ATP13: Mitochondrial 96.6 0.044 9.5E-07 42.3 10.4 100 146-266 1-100 (126)
218 KOG3941 Intermediate in Toll s 96.6 0.033 7.2E-07 48.1 10.5 105 359-482 65-174 (406)
219 PF09205 DUF1955: Domain of un 96.5 0.22 4.8E-06 37.9 13.3 61 293-356 90-150 (161)
220 PF13281 DUF4071: Domain of un 96.5 0.67 1.4E-05 43.0 20.0 78 222-299 146-227 (374)
221 COG5107 RNA14 Pre-mRNA 3'-end 96.5 0.69 1.5E-05 43.2 35.9 81 80-161 41-123 (660)
222 PF13371 TPR_9: Tetratricopept 96.5 0.017 3.7E-07 39.8 7.3 57 225-284 3-59 (73)
223 COG3118 Thioredoxin domain-con 96.5 0.37 8E-06 42.5 16.4 148 118-268 139-286 (304)
224 COG4785 NlpI Lipoprotein NlpI, 96.5 0.43 9.3E-06 39.9 15.8 182 93-283 79-266 (297)
225 PLN03098 LPA1 LOW PSII ACCUMUL 96.4 0.12 2.6E-06 48.5 13.9 68 109-176 71-141 (453)
226 KOG1538 Uncharacterized conser 96.4 0.32 6.9E-06 47.4 16.6 53 217-280 747-799 (1081)
227 KOG2280 Vacuolar assembly/sort 96.3 1.3 2.8E-05 44.2 29.8 322 108-456 427-795 (829)
228 PF10300 DUF3808: Protein of u 96.3 0.4 8.7E-06 46.8 17.6 142 99-245 177-333 (468)
229 PLN03098 LPA1 LOW PSII ACCUMUL 96.3 0.12 2.6E-06 48.6 13.0 66 215-283 73-141 (453)
230 PF13281 DUF4071: Domain of un 96.2 1 2.2E-05 41.8 20.3 97 146-243 140-252 (374)
231 PF10300 DUF3808: Protein of u 96.2 0.39 8.4E-06 46.9 17.1 161 187-354 193-375 (468)
232 COG4105 ComL DNA uptake lipopr 96.2 0.76 1.6E-05 39.8 20.4 183 115-317 37-232 (254)
233 KOG2280 Vacuolar assembly/sort 96.1 1.7 3.7E-05 43.4 25.0 303 91-420 449-794 (829)
234 COG4105 ComL DNA uptake lipopr 96.1 0.81 1.8E-05 39.6 20.9 55 228-282 45-99 (254)
235 PF04053 Coatomer_WDAD: Coatom 96.1 0.28 6.1E-06 47.2 15.2 105 113-243 295-399 (443)
236 smart00299 CLH Clathrin heavy 96.1 0.55 1.2E-05 37.2 15.2 43 118-160 12-54 (140)
237 PF13424 TPR_12: Tetratricopep 96.0 0.026 5.7E-07 39.4 6.2 63 218-280 6-72 (78)
238 PF08631 SPO22: Meiosis protei 96.0 1.1 2.5E-05 40.3 25.1 102 290-396 85-192 (278)
239 KOG1920 IkappaB kinase complex 95.9 2.8 6E-05 44.3 25.3 110 329-458 942-1053(1265)
240 PRK15331 chaperone protein Sic 95.9 0.052 1.1E-06 43.4 7.6 85 91-175 49-133 (165)
241 PF13424 TPR_12: Tetratricopep 95.9 0.024 5.3E-07 39.6 5.4 64 253-316 4-73 (78)
242 PF04053 Coatomer_WDAD: Coatom 95.8 0.4 8.6E-06 46.2 14.8 78 148-243 296-373 (443)
243 KOG3941 Intermediate in Toll s 95.7 0.099 2.1E-06 45.3 9.3 72 231-304 86-173 (406)
244 PRK15331 chaperone protein Sic 95.7 0.2 4.4E-06 40.1 10.2 21 333-353 112-132 (165)
245 KOG0543 FKBP-type peptidyl-pro 95.6 0.21 4.6E-06 45.8 11.4 138 154-317 215-354 (397)
246 COG1729 Uncharacterized protei 95.6 0.33 7.2E-06 42.3 11.9 97 184-282 144-243 (262)
247 smart00299 CLH Clathrin heavy 95.5 0.98 2.1E-05 35.8 15.4 126 330-478 11-137 (140)
248 PF13428 TPR_14: Tetratricopep 95.4 0.063 1.4E-06 32.5 5.3 41 218-261 2-42 (44)
249 PF13512 TPR_18: Tetratricopep 95.3 0.69 1.5E-05 36.2 11.8 58 227-284 20-77 (142)
250 COG1729 Uncharacterized protei 95.3 0.43 9.4E-06 41.6 11.8 105 113-219 142-251 (262)
251 KOG1258 mRNA processing protei 95.3 3.2 7E-05 40.5 29.3 333 109-452 41-421 (577)
252 KOG1920 IkappaB kinase complex 95.2 5.1 0.00011 42.6 21.8 33 108-141 786-820 (1265)
253 PF13428 TPR_14: Tetratricopep 95.2 0.07 1.5E-06 32.3 5.1 39 115-153 3-41 (44)
254 COG3118 Thioredoxin domain-con 95.1 2.2 4.7E-05 37.8 16.2 162 66-231 120-286 (304)
255 KOG1585 Protein required for f 95.0 2.1 4.5E-05 36.8 18.9 53 400-453 194-249 (308)
256 COG3629 DnrI DNA-binding trans 94.9 0.38 8.3E-06 42.6 10.6 78 114-191 154-236 (280)
257 PRK11906 transcriptional regul 94.9 3 6.4E-05 39.7 16.8 33 232-264 273-305 (458)
258 KOG2114 Vacuolar assembly/sort 94.8 0.73 1.6E-05 46.4 13.2 281 113-424 283-589 (933)
259 KOG4555 TPR repeat-containing 94.8 0.94 2E-05 34.5 10.8 91 226-319 52-145 (175)
260 KOG0543 FKBP-type peptidyl-pro 94.8 0.56 1.2E-05 43.2 11.5 138 121-282 216-354 (397)
261 KOG2610 Uncharacterized conser 94.8 1.3 2.9E-05 39.7 13.3 154 122-279 112-272 (491)
262 PF13170 DUF4003: Protein of u 94.7 3.2 7E-05 37.6 19.7 129 163-294 78-222 (297)
263 PF13512 TPR_18: Tetratricopep 94.7 1.3 2.9E-05 34.7 11.8 77 119-195 16-95 (142)
264 PRK11906 transcriptional regul 94.3 3 6.6E-05 39.6 15.5 79 97-175 322-400 (458)
265 PF04184 ST7: ST7 protein; In 94.3 5.2 0.00011 38.4 18.3 58 367-424 265-323 (539)
266 KOG4555 TPR repeat-containing 94.0 2.1 4.5E-05 32.7 11.1 88 90-177 54-145 (175)
267 COG3629 DnrI DNA-binding trans 93.9 0.7 1.5E-05 41.0 10.1 79 217-298 153-236 (280)
268 KOG1585 Protein required for f 93.9 3.8 8.3E-05 35.2 16.6 149 255-420 92-251 (308)
269 KOG2610 Uncharacterized conser 93.7 5.1 0.00011 36.2 17.2 161 91-254 115-283 (491)
270 KOG2114 Vacuolar assembly/sort 93.4 11 0.00023 38.7 27.4 114 119-243 403-516 (933)
271 PF10602 RPN7: 26S proteasome 92.9 2.3 5E-05 35.3 11.1 59 115-173 38-99 (177)
272 KOG1941 Acetylcholine receptor 92.8 6.9 0.00015 35.8 14.2 130 259-388 127-273 (518)
273 PF07035 Mic1: Colon cancer-as 92.6 4.8 0.0001 32.8 14.8 32 276-307 16-47 (167)
274 PF08631 SPO22: Meiosis protei 92.4 8.1 0.00018 34.9 26.3 19 370-388 255-273 (278)
275 PF10602 RPN7: 26S proteasome 92.1 2.4 5.2E-05 35.1 10.2 64 218-282 37-101 (177)
276 PF09613 HrpB1_HrpK: Bacterial 91.9 5.6 0.00012 32.0 12.5 54 228-284 21-74 (160)
277 TIGR02561 HrpB1_HrpK type III 91.8 5.4 0.00012 31.5 11.4 50 125-176 22-73 (153)
278 COG0457 NrfG FOG: TPR repeat [ 91.7 7.7 0.00017 33.2 29.1 59 185-244 62-122 (291)
279 PF10345 Cohesin_load: Cohesin 91.7 17 0.00037 37.2 28.7 187 166-353 40-252 (608)
280 COG3947 Response regulator con 91.5 9.6 0.00021 33.8 17.2 42 130-172 150-191 (361)
281 PF13170 DUF4003: Protein of u 91.3 11 0.00024 34.2 19.3 25 343-367 199-223 (297)
282 PF07035 Mic1: Colon cancer-as 91.3 6.9 0.00015 31.9 14.7 121 347-482 15-136 (167)
283 PF13431 TPR_17: Tetratricopep 91.3 0.28 6E-06 27.6 2.8 27 140-166 6-32 (34)
284 PF04184 ST7: ST7 protein; In 91.1 14 0.00031 35.6 14.9 81 397-477 260-342 (539)
285 PF02284 COX5A: Cytochrome c o 91.0 4 8.6E-05 29.7 8.8 58 165-223 28-85 (108)
286 PF13176 TPR_7: Tetratricopept 91.0 0.59 1.3E-05 26.7 4.0 26 433-458 1-26 (36)
287 KOG1941 Acetylcholine receptor 90.9 13 0.00028 34.1 15.4 225 197-422 20-272 (518)
288 PF09613 HrpB1_HrpK: Bacterial 90.8 7.5 0.00016 31.3 13.9 71 123-195 20-90 (160)
289 PF13176 TPR_7: Tetratricopept 90.7 0.64 1.4E-05 26.5 4.0 23 150-172 2-24 (36)
290 COG4649 Uncharacterized protei 90.3 8.7 0.00019 31.2 14.0 124 228-354 69-195 (221)
291 PF13929 mRNA_stabil: mRNA sta 90.2 13 0.00029 33.1 16.0 118 161-279 142-263 (292)
292 PF13431 TPR_17: Tetratricopep 90.0 0.31 6.7E-06 27.4 2.2 32 102-133 2-33 (34)
293 cd00923 Cyt_c_Oxidase_Va Cytoc 90.0 2.9 6.3E-05 30.0 7.3 61 270-333 23-83 (103)
294 KOG4570 Uncharacterized conser 89.7 1.9 4E-05 38.4 7.6 100 107-209 58-161 (418)
295 COG4785 NlpI Lipoprotein NlpI, 89.7 12 0.00025 31.8 16.6 74 136-211 88-161 (297)
296 KOG4570 Uncharacterized conser 89.6 6.1 0.00013 35.4 10.6 48 376-423 115-162 (418)
297 PF02284 COX5A: Cytochrome c o 89.5 2.7 5.7E-05 30.6 6.9 47 272-318 28-74 (108)
298 KOG1586 Protein required for f 89.4 8.7 0.00019 32.9 10.9 16 267-282 167-182 (288)
299 COG4649 Uncharacterized protei 89.2 11 0.00023 30.7 15.8 141 110-253 56-202 (221)
300 COG0457 NrfG FOG: TPR repeat [ 89.0 13 0.00029 31.6 29.2 169 217-389 59-230 (291)
301 KOG2066 Vacuolar assembly/sort 88.8 30 0.00065 35.4 26.6 102 120-229 363-467 (846)
302 KOG1550 Extracellular protein 88.7 29 0.00062 35.0 25.7 85 124-211 260-356 (552)
303 PF07575 Nucleopor_Nup85: Nup8 88.4 23 0.00051 35.8 15.6 25 113-138 149-173 (566)
304 KOG0276 Vesicle coat complex C 88.4 5 0.00011 39.3 10.0 149 229-421 598-746 (794)
305 TIGR02561 HrpB1_HrpK type III 88.2 11 0.00025 29.8 10.9 53 229-284 22-74 (153)
306 PF13929 mRNA_stabil: mRNA sta 88.0 19 0.00042 32.1 20.4 137 341-477 143-289 (292)
307 PRK09687 putative lyase; Provi 87.6 21 0.00046 32.2 30.2 235 215-478 35-279 (280)
308 cd00923 Cyt_c_Oxidase_Va Cytoc 86.4 10 0.00022 27.4 9.0 46 165-211 25-70 (103)
309 PF02259 FAT: FAT domain; Int 86.0 30 0.00065 32.3 22.8 67 324-390 144-213 (352)
310 KOG0276 Vesicle coat complex C 85.7 21 0.00045 35.3 12.5 132 291-457 616-747 (794)
311 COG2909 MalT ATP-dependent tra 85.7 49 0.0011 34.5 26.1 224 197-421 429-684 (894)
312 PF13374 TPR_10: Tetratricopep 85.4 2.2 4.8E-05 24.9 4.2 27 148-174 3-29 (42)
313 PF00515 TPR_1: Tetratricopept 85.2 2.2 4.9E-05 23.6 3.9 17 370-386 10-26 (34)
314 TIGR03504 FimV_Cterm FimV C-te 85.0 2.8 6.1E-05 25.2 4.3 25 437-461 5-29 (44)
315 PF11207 DUF2989: Protein of u 84.9 9.5 0.00021 32.0 8.8 71 164-236 123-197 (203)
316 PF00515 TPR_1: Tetratricopept 84.9 2.6 5.6E-05 23.4 4.1 27 149-175 3-29 (34)
317 KOG1550 Extracellular protein 84.7 48 0.001 33.5 25.7 181 129-319 228-427 (552)
318 PF07719 TPR_2: Tetratricopept 84.5 2.7 5.9E-05 23.1 4.1 27 149-175 3-29 (34)
319 COG4455 ImpE Protein of avirul 84.4 8.7 0.00019 32.6 8.2 79 256-335 3-81 (273)
320 PF13374 TPR_10: Tetratricopep 84.3 2.7 5.8E-05 24.5 4.2 27 218-244 3-29 (42)
321 PF11207 DUF2989: Protein of u 82.5 17 0.00037 30.5 9.3 20 288-307 177-196 (203)
322 PF00637 Clathrin: Region in C 81.9 0.61 1.3E-05 37.1 0.8 53 296-350 14-66 (143)
323 PF00637 Clathrin: Region in C 81.9 0.68 1.5E-05 36.8 1.1 128 332-481 13-140 (143)
324 PF06552 TOM20_plant: Plant sp 81.7 15 0.00033 30.2 8.5 65 247-319 62-137 (186)
325 COG3947 Response regulator con 81.6 11 0.00023 33.6 8.1 61 149-211 281-341 (361)
326 PF07719 TPR_2: Tetratricopept 81.4 4.7 0.0001 22.1 4.3 30 114-143 2-31 (34)
327 PF13762 MNE1: Mitochondrial s 80.7 26 0.00057 27.7 9.6 82 114-195 40-128 (145)
328 COG4455 ImpE Protein of avirul 80.6 14 0.0003 31.4 8.1 57 117-173 5-61 (273)
329 KOG2063 Vacuolar assembly/sort 80.5 82 0.0018 33.4 15.3 116 256-373 506-638 (877)
330 COG5159 RPN6 26S proteasome re 80.3 42 0.00092 29.9 11.2 35 435-469 129-167 (421)
331 KOG4648 Uncharacterized conser 80.0 8.1 0.00018 35.0 7.0 54 121-174 105-158 (536)
332 COG1747 Uncharacterized N-term 79.7 63 0.0014 31.5 23.6 60 256-318 68-127 (711)
333 PRK15180 Vi polysaccharide bio 79.6 61 0.0013 31.2 14.0 34 445-480 712-749 (831)
334 TIGR03504 FimV_Cterm FimV C-te 79.3 5 0.00011 24.2 3.9 24 153-176 5-28 (44)
335 PF13174 TPR_6: Tetratricopept 79.0 4.4 9.6E-05 22.0 3.6 25 222-246 5-29 (33)
336 cd00280 TRFH Telomeric Repeat 78.8 34 0.00073 28.3 9.5 41 439-482 119-159 (200)
337 PRK15180 Vi polysaccharide bio 78.7 65 0.0014 31.0 28.3 112 66-177 310-421 (831)
338 PF13174 TPR_6: Tetratricopept 78.6 3 6.5E-05 22.7 2.8 23 153-175 6-28 (33)
339 PF04097 Nic96: Nup93/Nic96; 78.5 84 0.0018 32.2 24.5 61 115-176 114-181 (613)
340 KOG4077 Cytochrome c oxidase, 77.9 19 0.0004 27.6 7.3 45 415-459 68-112 (149)
341 KOG0890 Protein kinase of the 77.4 1.6E+02 0.0035 34.9 26.2 116 152-278 1388-1507(2382)
342 PF08424 NRDE-2: NRDE-2, neces 77.2 62 0.0013 30.0 15.8 119 199-320 47-185 (321)
343 PF02259 FAT: FAT domain; Int 76.8 65 0.0014 30.0 23.0 69 287-355 144-213 (352)
344 KOG4077 Cytochrome c oxidase, 76.7 16 0.00036 27.8 6.7 44 167-211 69-112 (149)
345 KOG1464 COP9 signalosome, subu 76.7 53 0.0012 29.0 21.9 268 177-455 21-327 (440)
346 KOG4234 TPR repeat-containing 76.7 45 0.00096 28.1 10.9 21 440-460 177-197 (271)
347 PF07721 TPR_4: Tetratricopept 76.4 4.4 9.5E-05 21.0 2.8 19 222-240 6-24 (26)
348 COG2976 Uncharacterized protei 76.2 45 0.00097 27.9 13.0 90 296-391 96-189 (207)
349 PRK14956 DNA polymerase III su 76.2 36 0.00077 33.3 10.7 91 73-183 194-284 (484)
350 COG1747 Uncharacterized N-term 76.1 81 0.0018 30.8 24.6 181 214-406 63-249 (711)
351 KOG4648 Uncharacterized conser 76.1 15 0.00033 33.4 7.6 89 91-181 109-197 (536)
352 PRK11619 lytic murein transgly 75.8 1E+02 0.0022 31.8 38.8 274 64-353 81-373 (644)
353 PF13181 TPR_8: Tetratricopept 75.3 9.1 0.0002 21.0 4.3 27 433-459 3-29 (34)
354 PF07163 Pex26: Pex26 protein; 75.2 45 0.00098 29.7 10.0 87 261-349 90-181 (309)
355 PF08424 NRDE-2: NRDE-2, neces 74.6 72 0.0016 29.5 16.5 156 102-285 8-185 (321)
356 PF07163 Pex26: Pex26 protein; 74.3 38 0.00083 30.1 9.3 90 221-312 87-181 (309)
357 KOG2063 Vacuolar assembly/sort 74.1 1.3E+02 0.0027 32.1 18.8 118 219-338 506-638 (877)
358 PF10579 Rapsyn_N: Rapsyn N-te 73.8 9.8 0.00021 26.3 4.6 48 229-276 18-65 (80)
359 PF09477 Type_III_YscG: Bacter 73.6 34 0.00074 25.3 9.1 79 94-177 21-99 (116)
360 PF13181 TPR_8: Tetratricopept 73.1 11 0.00024 20.6 4.2 25 150-174 4-28 (34)
361 PRK10564 maltose regulon perip 72.8 8.9 0.00019 34.3 5.4 45 248-292 251-295 (303)
362 PF11848 DUF3368: Domain of un 72.4 17 0.00036 22.4 5.1 31 443-473 14-44 (48)
363 PHA02875 ankyrin repeat protei 71.9 31 0.00067 33.3 9.6 206 237-467 15-231 (413)
364 KOG2066 Vacuolar assembly/sort 71.7 1.3E+02 0.0028 31.1 26.6 147 93-245 370-533 (846)
365 KOG4234 TPR repeat-containing 71.5 47 0.001 27.9 8.8 61 220-283 137-197 (271)
366 KOG1586 Protein required for f 71.4 68 0.0015 27.8 18.5 56 340-395 128-188 (288)
367 KOG0687 26S proteasome regulat 70.8 85 0.0018 28.7 16.0 65 327-391 105-174 (393)
368 KOG0890 Protein kinase of the 70.6 2.3E+02 0.0051 33.7 27.9 151 118-278 1388-1542(2382)
369 KOG1924 RhoA GTPase effector D 70.4 7.7 0.00017 39.2 4.9 16 289-304 838-853 (1102)
370 KOG1924 RhoA GTPase effector D 69.9 7.7 0.00017 39.2 4.7 64 206-269 790-853 (1102)
371 KOG1114 Tripeptidyl peptidase 69.0 1.5E+02 0.0033 31.5 13.3 81 377-458 1212-1293(1304)
372 cd00280 TRFH Telomeric Repeat 68.7 56 0.0012 27.0 8.5 64 129-195 85-156 (200)
373 COG2976 Uncharacterized protei 68.6 70 0.0015 26.8 13.8 128 327-461 55-189 (207)
374 PF11846 DUF3366: Domain of un 67.7 20 0.00044 30.2 6.5 31 145-175 142-172 (193)
375 KOG1464 COP9 signalosome, subu 67.7 89 0.0019 27.7 17.8 204 212-417 21-252 (440)
376 KOG4507 Uncharacterized conser 67.7 34 0.00073 33.8 8.3 63 197-262 656-718 (886)
377 PF04097 Nic96: Nup93/Nic96; 67.4 1.5E+02 0.0034 30.4 14.7 43 187-230 116-158 (613)
378 KOG2396 HAT (Half-A-TPR) repea 67.3 1.3E+02 0.0028 29.4 35.0 81 96-176 88-169 (568)
379 PF06552 TOM20_plant: Plant sp 67.3 34 0.00074 28.2 7.1 62 130-193 52-124 (186)
380 KOG2297 Predicted translation 67.3 98 0.0021 28.0 20.5 118 212-346 218-341 (412)
381 cd08819 CARD_MDA5_2 Caspase ac 65.4 46 0.001 23.6 6.8 58 133-195 22-79 (88)
382 KOG4642 Chaperone-dependent E3 65.1 95 0.0021 27.1 11.0 119 123-243 20-143 (284)
383 PF10579 Rapsyn_N: Rapsyn N-te 65.0 28 0.00061 24.1 5.3 46 408-453 18-65 (80)
384 PRK10941 hypothetical protein; 65.0 1E+02 0.0022 27.6 10.4 77 115-191 183-260 (269)
385 TIGR02508 type_III_yscG type I 64.6 53 0.0012 24.1 8.4 85 95-185 21-105 (115)
386 PF11848 DUF3368: Domain of un 64.1 30 0.00065 21.3 5.0 34 157-190 12-45 (48)
387 KOG2908 26S proteasome regulat 63.7 85 0.0018 28.8 9.5 87 366-452 80-178 (380)
388 PF14689 SPOB_a: Sensor_kinase 63.7 26 0.00057 23.0 5.0 27 433-459 25-51 (62)
389 TIGR02508 type_III_yscG type I 63.5 56 0.0012 23.9 8.2 28 157-188 49-76 (115)
390 KOG4279 Serine/threonine prote 62.9 1.9E+02 0.0042 29.9 12.8 115 130-251 180-318 (1226)
391 PRK09687 putative lyase; Provi 62.8 1.2E+02 0.0026 27.4 29.6 201 216-441 67-277 (280)
392 KOG2034 Vacuolar sorting prote 61.8 2.2E+02 0.0047 30.1 26.6 67 414-482 611-677 (911)
393 smart00386 HAT HAT (Half-A-TPR 61.6 21 0.00046 18.9 3.9 27 128-154 2-28 (33)
394 KOG0403 Neoplastic transformat 60.8 1.6E+02 0.0035 28.3 22.8 95 399-498 512-616 (645)
395 PF04190 DUF410: Protein of un 60.2 1.3E+02 0.0028 26.9 18.1 28 215-242 88-115 (260)
396 PRK12798 chemotaxis protein; R 60.1 1.6E+02 0.0035 28.1 21.0 195 160-359 125-328 (421)
397 PF07575 Nucleopor_Nup85: Nup8 59.9 66 0.0014 32.6 9.5 93 256-354 374-466 (566)
398 COG0735 Fur Fe2+/Zn2+ uptake r 59.9 64 0.0014 25.7 7.5 43 438-480 27-69 (145)
399 PRK11619 lytic murein transgly 59.7 2.2E+02 0.0048 29.5 29.7 339 109-482 95-455 (644)
400 PF09670 Cas_Cas02710: CRISPR- 59.7 1.6E+02 0.0035 28.0 11.5 55 297-354 139-197 (379)
401 COG5187 RPN7 26S proteasome re 59.2 1.4E+02 0.0029 26.9 14.4 100 215-317 113-220 (412)
402 COG5159 RPN6 26S proteasome re 58.7 1.4E+02 0.003 26.8 16.8 28 223-251 9-36 (421)
403 PF11846 DUF3366: Domain of un 58.3 51 0.0011 27.7 7.3 29 215-243 142-170 (193)
404 PRK10564 maltose regulon perip 57.5 28 0.00061 31.3 5.5 42 429-470 254-296 (303)
405 PF14689 SPOB_a: Sensor_kinase 55.6 39 0.00086 22.1 4.8 24 330-353 27-50 (62)
406 COG2178 Predicted RNA-binding 55.5 1.2E+02 0.0027 25.3 9.6 14 230-243 134-147 (204)
407 PF09477 Type_III_YscG: Bacter 55.0 86 0.0019 23.3 8.7 29 214-244 68-96 (116)
408 PF12862 Apc5: Anaphase-promot 53.7 81 0.0018 22.7 6.9 53 123-175 8-69 (94)
409 KOG2297 Predicted translation 53.6 1.8E+02 0.0038 26.5 17.8 170 215-415 163-340 (412)
410 PF14853 Fis1_TPR_C: Fis1 C-te 53.3 51 0.0011 20.8 4.8 35 152-188 6-40 (53)
411 COG5108 RPO41 Mitochondrial DN 53.1 1.1E+02 0.0025 30.9 9.2 90 259-353 33-130 (1117)
412 KOG4507 Uncharacterized conser 52.6 68 0.0015 31.8 7.5 59 259-318 647-705 (886)
413 PF11838 ERAP1_C: ERAP1-like C 52.5 1.9E+02 0.0041 26.6 19.1 96 377-477 146-246 (324)
414 PF10255 Paf67: RNA polymerase 52.3 60 0.0013 31.0 7.1 62 219-280 124-190 (404)
415 COG5108 RPO41 Mitochondrial DN 52.2 1.5E+02 0.0033 30.1 9.8 93 294-389 33-131 (1117)
416 smart00777 Mad3_BUB1_I Mad3/BU 52.1 75 0.0016 24.5 6.4 42 236-278 82-123 (125)
417 PF08311 Mad3_BUB1_I: Mad3/BUB 51.9 1.1E+02 0.0024 23.6 10.0 44 235-279 81-124 (126)
418 smart00028 TPR Tetratricopepti 51.6 32 0.0007 17.4 3.8 25 150-174 4-28 (34)
419 PRK11639 zinc uptake transcrip 51.2 1E+02 0.0022 25.3 7.6 62 387-449 17-78 (169)
420 PHA02875 ankyrin repeat protei 50.7 2.4E+02 0.0051 27.2 15.4 15 226-240 74-88 (413)
421 PF11663 Toxin_YhaV: Toxin wit 50.6 20 0.00044 27.8 3.1 19 377-395 111-129 (140)
422 PF13762 MNE1: Mitochondrial s 50.3 1.3E+02 0.0028 24.0 12.3 46 398-443 81-127 (145)
423 PF10366 Vps39_1: Vacuolar sor 50.0 83 0.0018 23.5 6.3 26 150-175 42-67 (108)
424 PRK14951 DNA polymerase III su 50.0 2.4E+02 0.0052 29.0 11.3 35 146-181 250-284 (618)
425 PF00244 14-3-3: 14-3-3 protei 49.4 1.8E+02 0.0039 25.5 10.3 23 223-245 7-29 (236)
426 PF09454 Vps23_core: Vps23 cor 49.4 37 0.0008 22.6 3.9 49 111-159 6-54 (65)
427 PF09868 DUF2095: Uncharacteri 49.3 72 0.0016 23.8 5.5 33 119-151 67-99 (128)
428 PF14561 TPR_20: Tetratricopep 49.2 96 0.0021 22.2 7.5 35 250-284 18-52 (90)
429 KOG0991 Replication factor C, 49.2 1.8E+02 0.0039 25.4 13.4 90 347-440 180-281 (333)
430 PRK09857 putative transposase; 48.2 1.5E+02 0.0034 26.9 9.0 65 400-465 210-274 (292)
431 KOG4567 GTPase-activating prot 47.9 1.1E+02 0.0023 27.9 7.4 70 381-455 263-342 (370)
432 KOG3807 Predicted membrane pro 47.9 2.2E+02 0.0048 26.2 9.4 122 233-368 232-354 (556)
433 PRK08691 DNA polymerase III su 47.6 2.8E+02 0.006 28.9 11.3 33 148-181 247-279 (709)
434 PF11817 Foie-gras_1: Foie gra 47.6 1.4E+02 0.0031 26.3 8.6 61 256-316 180-245 (247)
435 cd01041 Rubrerythrin Rubreryth 47.0 92 0.002 24.3 6.6 45 449-493 73-118 (134)
436 PF04190 DUF410: Protein of un 46.8 2.1E+02 0.0046 25.5 19.7 21 362-382 91-111 (260)
437 PF09454 Vps23_core: Vps23 cor 46.3 42 0.00091 22.3 3.7 51 428-479 5-55 (65)
438 KOG0991 Replication factor C, 46.3 2E+02 0.0044 25.1 13.1 137 331-477 135-283 (333)
439 COG0790 FOG: TPR repeat, SEL1 46.2 2.3E+02 0.0049 25.6 24.8 85 379-470 173-276 (292)
440 KOG0687 26S proteasome regulat 46.1 2.4E+02 0.0053 26.0 14.9 134 178-317 66-209 (393)
441 PF10366 Vps39_1: Vacuolar sor 45.9 1.3E+02 0.0027 22.6 8.1 27 433-459 41-67 (108)
442 PF02847 MA3: MA3 domain; Int 45.8 1.2E+02 0.0027 22.5 7.8 21 367-387 8-28 (113)
443 PRK14961 DNA polymerase III su 45.7 2.7E+02 0.0058 26.3 10.7 36 145-181 244-279 (363)
444 PRK14958 DNA polymerase III su 45.5 3.2E+02 0.0069 27.4 11.3 38 144-182 243-280 (509)
445 KOG4567 GTPase-activating prot 45.3 1.4E+02 0.003 27.2 7.7 56 310-372 264-319 (370)
446 KOG1308 Hsp70-interacting prot 45.1 18 0.00038 33.1 2.4 92 91-182 126-217 (377)
447 cd07153 Fur_like Ferric uptake 44.8 63 0.0014 24.3 5.2 47 402-448 6-52 (116)
448 cd08819 CARD_MDA5_2 Caspase ac 44.6 1.1E+02 0.0025 21.7 6.4 14 231-244 50-63 (88)
449 PF03745 DUF309: Domain of unk 44.5 76 0.0016 20.8 4.7 17 373-389 11-27 (62)
450 PRK09462 fur ferric uptake reg 44.2 1.6E+02 0.0035 23.5 7.7 62 386-448 7-69 (148)
451 PRK07764 DNA polymerase III su 44.0 4.4E+02 0.0095 28.3 15.1 27 152-179 253-279 (824)
452 KOG0292 Vesicle coat complex C 43.8 1.5E+02 0.0032 31.3 8.6 132 156-319 652-783 (1202)
453 KOG2659 LisH motif-containing 43.7 2E+02 0.0044 24.9 8.2 97 322-420 22-127 (228)
454 PLN03025 replication factor C 43.6 2.7E+02 0.0058 25.7 15.9 31 73-103 172-202 (319)
455 PF09868 DUF2095: Uncharacteri 43.5 92 0.002 23.3 5.3 41 152-193 66-106 (128)
456 smart00777 Mad3_BUB1_I Mad3/BU 43.3 1E+02 0.0023 23.8 6.0 40 132-171 82-123 (125)
457 PRK07003 DNA polymerase III su 42.9 4.4E+02 0.0094 28.0 14.3 33 73-105 192-224 (830)
458 PF02847 MA3: MA3 domain; Int 42.9 1.4E+02 0.003 22.2 7.4 66 400-467 6-73 (113)
459 PF10475 DUF2450: Protein of u 42.9 2.6E+02 0.0057 25.4 11.3 53 222-282 103-155 (291)
460 PF14669 Asp_Glu_race_2: Putat 42.9 2E+02 0.0044 24.1 15.3 55 331-385 137-205 (233)
461 PF07064 RIC1: RIC1; InterPro 42.5 2.5E+02 0.0054 25.0 14.8 25 257-281 85-109 (258)
462 PF12926 MOZART2: Mitotic-spin 42.5 1.2E+02 0.0027 21.5 7.7 43 417-459 29-71 (88)
463 KOG4642 Chaperone-dependent E3 41.8 2.4E+02 0.0053 24.7 10.4 60 218-280 45-104 (284)
464 TIGR02397 dnaX_nterm DNA polym 41.8 3E+02 0.0065 25.8 13.7 28 152-180 249-276 (355)
465 PF11838 ERAP1_C: ERAP1-like C 41.8 2.8E+02 0.0061 25.4 24.5 81 270-355 146-230 (324)
466 PF01475 FUR: Ferric uptake re 40.9 59 0.0013 24.7 4.5 44 437-480 13-56 (120)
467 PF11123 DNA_Packaging_2: DNA 40.7 96 0.0021 21.1 4.6 31 129-159 13-43 (82)
468 TIGR01503 MthylAspMut_E methyl 40.3 3.6E+02 0.0078 26.3 10.7 146 303-458 68-237 (480)
469 KOG1923 Rac1 GTPase effector F 40.3 55 0.0012 33.5 5.1 11 399-409 719-729 (830)
470 PRK14963 DNA polymerase III su 40.0 4E+02 0.0086 26.7 11.1 35 146-181 241-275 (504)
471 PRK12323 DNA polymerase III su 39.6 4.6E+02 0.0099 27.3 12.6 31 74-104 198-228 (700)
472 COG4003 Uncharacterized protei 39.4 1.1E+02 0.0023 21.3 4.8 36 152-188 36-71 (98)
473 KOG0508 Ankyrin repeat protein 38.4 2.5E+02 0.0055 27.2 8.7 268 189-478 88-387 (615)
474 PRK06645 DNA polymerase III su 38.0 4.3E+02 0.0092 26.5 11.3 37 145-182 256-292 (507)
475 PF02607 B12-binding_2: B12 bi 37.9 1.3E+02 0.0029 20.5 6.2 37 444-480 14-50 (79)
476 PRK08691 DNA polymerase III su 37.8 5E+02 0.011 27.2 12.5 86 342-430 180-279 (709)
477 PF08311 Mad3_BUB1_I: Mad3/BUB 37.7 1.9E+02 0.0041 22.3 9.6 43 414-456 81-124 (126)
478 KOG3636 Uncharacterized conser 37.5 3.8E+02 0.0083 25.8 16.5 89 389-478 176-272 (669)
479 COG0735 Fur Fe2+/Zn2+ uptake r 37.2 2.1E+02 0.0046 22.7 7.3 61 135-195 8-68 (145)
480 KOG0376 Serine-threonine phosp 37.2 98 0.0021 29.9 6.0 105 191-301 13-117 (476)
481 PF11123 DNA_Packaging_2: DNA 37.2 1.3E+02 0.0029 20.4 4.9 28 199-226 13-40 (82)
482 PF14853 Fis1_TPR_C: Fis1 C-te 36.6 1.1E+02 0.0024 19.3 5.2 31 437-469 7-37 (53)
483 PF11768 DUF3312: Protein of u 36.4 1.6E+02 0.0034 29.2 7.4 94 402-495 414-509 (545)
484 PF02184 HAT: HAT (Half-A-TPR) 36.4 58 0.0012 18.1 2.6 21 342-364 3-23 (32)
485 PRK14952 DNA polymerase III su 36.3 3.1E+02 0.0067 28.0 9.7 30 151-181 250-279 (584)
486 PRK10941 hypothetical protein; 36.3 3.2E+02 0.007 24.5 10.3 77 221-300 185-262 (269)
487 KOG3677 RNA polymerase I-assoc 36.3 3.3E+02 0.0072 26.0 9.0 24 151-174 239-262 (525)
488 KOG1308 Hsp70-interacting prot 36.0 28 0.0006 31.9 2.2 88 197-287 128-215 (377)
489 PF11817 Foie-gras_1: Foie gra 36.0 2.2E+02 0.0049 25.1 8.0 55 402-456 184-243 (247)
490 PF08314 Sec39: Secretory path 35.9 4.5E+02 0.0099 27.7 11.4 185 288-482 431-649 (715)
491 PRK09857 putative transposase; 35.5 3.5E+02 0.0075 24.7 10.2 17 89-105 15-31 (292)
492 KOG1498 26S proteasome regulat 35.2 4E+02 0.0087 25.3 17.3 23 221-243 135-157 (439)
493 PF04124 Dor1: Dor1-like famil 34.7 3.3E+02 0.0071 25.5 9.2 25 330-354 110-134 (338)
494 KOG1923 Rac1 GTPase effector F 34.1 94 0.002 31.9 5.6 11 128-138 402-412 (830)
495 PF14669 Asp_Glu_race_2: Putat 34.0 2.9E+02 0.0062 23.3 14.8 57 400-456 136-206 (233)
496 PF12862 Apc5: Anaphase-promot 33.9 1.8E+02 0.0039 20.9 7.7 54 90-143 9-71 (94)
497 PF14561 TPR_20: Tetratricopep 33.6 1.8E+02 0.0039 20.8 7.6 55 214-269 19-73 (90)
498 PF01347 Vitellogenin_N: Lipop 33.4 5.5E+02 0.012 26.4 19.0 249 78-336 343-617 (618)
499 COG0790 FOG: TPR repeat, SEL1 33.3 3.6E+02 0.0079 24.3 23.4 46 344-392 173-222 (292)
500 cd00245 Glm_e Coenzyme B12-dep 33.1 1.6E+02 0.0034 28.5 6.7 84 379-466 109-202 (428)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.2e-63 Score=507.52 Aligned_cols=427 Identities=16% Similarity=0.235 Sum_probs=397.4
Q ss_pred CchhHHHHHHhcCCCC-CHHHHHHHHHhh--cCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 010830 64 SSDDIESALACTGIIP-TPDLVHEVLQLS--YDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMK 140 (499)
Q Consensus 64 ~~~~l~~~l~~~~~~~-~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 140 (499)
.+.++...|...|..+ +......++..+ .+..++|.++|+.+.. ||..+|+.++.+|++.|+++.|.++|++|.
T Consensus 388 eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~---pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~ 464 (1060)
T PLN03218 388 DCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---PTLSTFNMLMSVCASSQDIDGALRVLRLVQ 464 (1060)
T ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC---CCHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 3456788888888654 444455555543 5789999999998854 999999999999999999999999999999
Q ss_pred hCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhc-cCCCCHH
Q 010830 141 EDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGD 218 (499)
Q Consensus 141 ~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~ 218 (499)
+.|. ||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++. |++++|.++|++|.+ ++.||..
T Consensus 465 ~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~-G~~eeAl~lf~~M~~~Gv~PD~v 543 (1060)
T PLN03218 465 EAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA-GQVAKAFGAYGIMRSKNVKPDRV 543 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHcCCCCCHH
Confidence 9994 899999999999999999999999999999999999999999999999999 999999999999975 8999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhHc-cCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 010830 219 SFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297 (499)
Q Consensus 219 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 297 (499)
+|+.+|.+|++.|++++|.++|++|... .++.| |..+|+++|.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.
T Consensus 544 TYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ 622 (1060)
T PLN03218 544 VFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN 622 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Confidence 9999999999999999999999999763 47889 788999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCH
Q 010830 298 ILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377 (499)
Q Consensus 298 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 377 (499)
+|++.|++++|.++|++|.+.| +.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++
T Consensus 623 ay~k~G~~deAl~lf~eM~~~G--v~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~ 700 (1060)
T PLN03218 623 SCSQKGDWDFALSIYDDMKKKG--VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNW 700 (1060)
T ss_pred HHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Confidence 9999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 010830 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457 (499)
Q Consensus 378 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 457 (499)
++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|
T Consensus 701 eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M 780 (1060)
T PLN03218 701 KKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQA 780 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCccCHHHHHHHHHHHHh----c------------c------cc---hHHHHHHHHHHHhhc
Q 010830 458 LNRRILIYEVTMHKLKKAFYN----E------------S------RS---MRDIFDSLERRCKTS 497 (499)
Q Consensus 458 ~~~~~~p~~~~~~~ll~~~~~----~------------g------~~---a~~~~~~~~~~~~~~ 497 (499)
.+.|+.||..+|+.++..|.+ . | .+ |..+|++|.+.+..+
T Consensus 781 ~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~P 845 (1060)
T PLN03218 781 KEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLP 845 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCC
Confidence 999999999999999876542 1 1 12 888999998887665
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.3e-62 Score=501.84 Aligned_cols=411 Identities=14% Similarity=0.212 Sum_probs=390.0
Q ss_pred CCHHHHHHHHH--hhcCCchhHHHHHHHhcC-C-CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHH
Q 010830 79 PTPDLVHEVLQ--LSYDSPSSAVDFFRWAGR-G-QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIF 154 (499)
Q Consensus 79 ~~~~~~~~~l~--~~~~~~~~a~~~~~~~~~-~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li 154 (499)
++...+..++. ...|++++|+++|++|.+ + ..++...++.++..|.+.|.+++|.++|+.|.. |+..+|+.+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~---pd~~Tyn~LL 444 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---PTLSTFNMLM 444 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC---CCHHHHHHHH
Confidence 33444444444 236899999999999976 4 467888999999999999999999999999986 8999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHhcCCH
Q 010830 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNV 233 (499)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~ 233 (499)
.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++. |+++.|.++|++|.+ ++.||..+|+.+|.+|++.|++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~-G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKS-GKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 99999999999999999999999999999999999999999 999999999999976 8899999999999999999999
Q ss_pred HHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhh--CCCCCCHhhHHHHHHHHHHcCCHhHHHHH
Q 010830 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG--ENCFPTLKFFSNALDILVKLNDSTHAVQL 311 (499)
Q Consensus 234 ~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 311 (499)
++|.++|++|.+. |+.| |..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.+|.+|++.|++++|.++
T Consensus 524 eeAl~lf~~M~~~-Gv~P-D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 524 AKAFGAYGIMRSK-NVKP-DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred HHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999986 9999 888999999999999999999999999986 68999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010830 312 WDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391 (499)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 391 (499)
|+.|.+.| +.|+..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|
T Consensus 602 f~~M~e~g--i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G 679 (1060)
T PLN03218 602 YQMIHEYN--IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679 (1060)
T ss_pred HHHHHHcC--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999999 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHH
Q 010830 392 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK 471 (499)
Q Consensus 392 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 471 (499)
+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~s 759 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI 759 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccc--hHHHHHHHHHHHhhc
Q 010830 472 LKKAFYNESRS--MRDIFDSLERRCKTS 497 (499)
Q Consensus 472 ll~~~~~~g~~--a~~~~~~~~~~~~~~ 497 (499)
++.+|++.|+. |.+++++|.+.+..+
T Consensus 760 LL~a~~k~G~le~A~~l~~~M~k~Gi~p 787 (1060)
T PLN03218 760 LLVASERKDDADVGLDLLSQAKEDGIKP 787 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999998 999999998876543
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.8e-62 Score=495.99 Aligned_cols=407 Identities=17% Similarity=0.167 Sum_probs=374.6
Q ss_pred hhHHHHHHhc-CCCCCHHHHHHHHHhh--cCCchhHHHHHHHhcC-CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 010830 66 DDIESALACT-GIIPTPDLVHEVLQLS--YDSPSSAVDFFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE 141 (499)
Q Consensus 66 ~~l~~~l~~~-~~~~~~~~~~~~l~~~--~~~~~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 141 (499)
.++...|... +..|+..+++.++..+ .++.+.|.+++..+.+ |..||..+||.+++.|++.|+++.|.++|++|.+
T Consensus 107 l~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~ 186 (697)
T PLN03081 107 LELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE 186 (697)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC
Confidence 3566677665 4789999999999855 5788899999998865 8999999999999999999999999999999975
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhc-cCCCCHHHH
Q 010830 142 DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSF 220 (499)
Q Consensus 142 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~ 220 (499)
+|..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++. |..+.+.+++..+.+ +..+|..+|
T Consensus 187 ---~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~-~~~~~~~~l~~~~~~~g~~~d~~~~ 262 (697)
T PLN03081 187 ---RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL-GSARAGQQLHCCVLKTGVVGDTFVS 262 (697)
T ss_pred ---CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcC-CcHHHHHHHHHHHHHhCCCccceeH
Confidence 588899999999999999999999999999999999999999999999999 999999999988865 889999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 010830 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV 300 (499)
Q Consensus 221 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 300 (499)
+.++++|+++|++++|.++|++|.++ |..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+
T Consensus 263 n~Li~~y~k~g~~~~A~~vf~~m~~~------~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~ 336 (697)
T PLN03081 263 CALIDMYSKCGDIEDARCVFDGMPEK------TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFS 336 (697)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCC------ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999654 888999999999999999999999999999999999999999999999
Q ss_pred HcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHH
Q 010830 301 KLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEV 380 (499)
Q Consensus 301 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 380 (499)
+.|++++|.+++..|.+.| +.||..+|++||.+|+++|++++|.++|++|.+ ||..+||.||.+|++.|+.++|
T Consensus 337 ~~g~~~~a~~i~~~m~~~g--~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A 410 (697)
T PLN03081 337 RLALLEHAKQAHAGLIRTG--FPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKA 410 (697)
T ss_pred hccchHHHHHHHHHHHHhC--CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHH
Confidence 9999999999999999999 899999999999999999999999999999964 7999999999999999999999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHH-CCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 010830 381 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE-NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459 (499)
Q Consensus 381 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 459 (499)
.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.+++++|
T Consensus 411 ~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-- 488 (697)
T PLN03081 411 VEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-- 488 (697)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC--
Confidence 99999999999999999999999999999999999999999985 699999999999999999999999999998876
Q ss_pred cCCccCHHHHHHHHHHHHhcccc--hHHHHHHHH
Q 010830 460 RRILIYEVTMHKLKKAFYNESRS--MRDIFDSLE 491 (499)
Q Consensus 460 ~~~~p~~~~~~~ll~~~~~~g~~--a~~~~~~~~ 491 (499)
++.|+..+|+.|+.+|...|+. |.++++++.
T Consensus 489 -~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~ 521 (697)
T PLN03081 489 -PFKPTVNMWAALLTACRIHKNLELGRLAAEKLY 521 (697)
T ss_pred -CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 5778888899998888888877 555555543
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.3e-59 Score=473.62 Aligned_cols=410 Identities=17% Similarity=0.191 Sum_probs=388.1
Q ss_pred hhHHHHHHhcCCCCCHHHHHHHHH--hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 010830 66 DDIESALACTGIIPTPDLVHEVLQ--LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG 143 (499)
Q Consensus 66 ~~l~~~l~~~~~~~~~~~~~~~l~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 143 (499)
.+++..+.+.|+.|+..+++.++. ...|+++.|.++|+.+. .||..+||.+|.+|++.|++++|+++|++|.+.|
T Consensus 143 ~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~---~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g 219 (697)
T PLN03081 143 KAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP---ERNLASWGTIIGGLVDAGNYREAFALFREMWEDG 219 (697)
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC---CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 468888889999999999999998 44789999999999874 5899999999999999999999999999999999
Q ss_pred C-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHH
Q 010830 144 V-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222 (499)
Q Consensus 144 ~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 222 (499)
. |+..+|+.++.+|++.|+.+.+.+++..+.+.|+.||..+|++|+.+|++. |++++|.++|+.|.. +|..+||.
T Consensus 220 ~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~-g~~~~A~~vf~~m~~---~~~vt~n~ 295 (697)
T PLN03081 220 SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKC-GDIEDARCVFDGMPE---KTTVAWNS 295 (697)
T ss_pred CCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHC-CCHHHHHHHHHhCCC---CChhHHHH
Confidence 4 899999999999999999999999999999999999999999999999999 999999999999975 79999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHc
Q 010830 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302 (499)
Q Consensus 223 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 302 (499)
++.+|++.|+.++|.++|++|.+. |+.| |..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.+|++|++.
T Consensus 296 li~~y~~~g~~~eA~~lf~~M~~~-g~~p-d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~ 373 (697)
T PLN03081 296 MLAGYALHGYSEEALCLYYEMRDS-GVSI-DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKW 373 (697)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHC
Confidence 999999999999999999999885 9999 78899999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHH
Q 010830 303 NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382 (499)
Q Consensus 303 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 382 (499)
|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.+
T Consensus 374 G~~~~A~~vf~~m~------~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~ 447 (697)
T PLN03081 374 GRMEDARNVFDRMP------RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWE 447 (697)
T ss_pred CCHHHHHHHHHhCC------CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHH
Confidence 99999999999985 368999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-CCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 010830 383 FFHEMIK-NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461 (499)
Q Consensus 383 ~~~~~~~-~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 461 (499)
+|+.|.+ .|+.|+..+|+.++.+|++.|++++|.+++++| ++.|+..+|++|+.+|+..|+++.|..+++++.+
T Consensus 448 ~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~-- 522 (697)
T PLN03081 448 IFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG-- 522 (697)
T ss_pred HHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--
Confidence 9999986 599999999999999999999999999998765 6899999999999999999999999999999974
Q ss_pred CccC-HHHHHHHHHHHHhcccc--hHHHHHHHHHHHh
Q 010830 462 ILIY-EVTMHKLKKAFYNESRS--MRDIFDSLERRCK 495 (499)
Q Consensus 462 ~~p~-~~~~~~ll~~~~~~g~~--a~~~~~~~~~~~~ 495 (499)
+.|+ ..+|..|++.|++.|++ |.+++++|.+++.
T Consensus 523 ~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 523 MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 4554 67999999999999999 9999999988764
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.1e-59 Score=485.79 Aligned_cols=408 Identities=15% Similarity=0.200 Sum_probs=292.1
Q ss_pred CchhHHHHHHhcCCCCCHHHHHHHHHhh--cCCchhHHHHHHHhcC-CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 010830 64 SSDDIESALACTGIIPTPDLVHEVLQLS--YDSPSSAVDFFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMK 140 (499)
Q Consensus 64 ~~~~l~~~l~~~~~~~~~~~~~~~l~~~--~~~~~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 140 (499)
.+..+...+...|..|+..++..++..| .+..+.|.+++..+.+ +..++...+|+++..|++.|+++.|+++|++|.
T Consensus 69 ~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~ 148 (857)
T PLN03077 69 QALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP 148 (857)
T ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCC
Confidence 3445777777888888888887777754 3456677777766544 566777777777777777777777777777776
Q ss_pred hCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhc-cCCCCHHH
Q 010830 141 EDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDS 219 (499)
Q Consensus 141 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~ 219 (499)
+ +|..+|+.+|.+|++.|++++|.++|++|...|+.||..||+.++.+|+.. +++..+.+++..+.+ |..||..+
T Consensus 149 ~---~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~ 224 (857)
T PLN03077 149 E---RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGI-PDLARGREVHAHVVRFGFELDVDV 224 (857)
T ss_pred C---CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCc-cchhhHHHHHHHHHHcCCCcccch
Confidence 4 356677777777777777777777777777777777777777777777776 777777777776654 67777777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 010830 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299 (499)
Q Consensus 220 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 299 (499)
|+.++.+|++.|++++|.++|++|.+. |..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|
T Consensus 225 ~n~Li~~y~k~g~~~~A~~lf~~m~~~------d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~ 298 (857)
T PLN03077 225 VNALITMYVKCGDVVSARLVFDRMPRR------DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAC 298 (857)
T ss_pred HhHHHHHHhcCCCHHHHHHHHhcCCCC------CcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Confidence 777777777777777777777777543 66677777777777777777777777777777777777777777777
Q ss_pred HHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhH
Q 010830 300 VKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379 (499)
Q Consensus 300 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 379 (499)
++.|+.+.|.+++..|.+.| +.||..+||+||.+|++.|++++|.++|++|.. ||..+|+.+|.+|++.|++++
T Consensus 299 ~~~g~~~~a~~l~~~~~~~g--~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~ 372 (857)
T PLN03077 299 ELLGDERLGREMHGYVVKTG--FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDK 372 (857)
T ss_pred HhcCChHHHHHHHHHHHHhC--CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHH
Confidence 77777777777777777777 677777777777777777777777777777753 567777777777777777777
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 010830 380 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459 (499)
Q Consensus 380 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 459 (499)
|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+
T Consensus 373 A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~ 452 (857)
T PLN03077 373 ALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE 452 (857)
T ss_pred HHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777666653
Q ss_pred cCCccCHHHHHHHHHHHHhcccc--hHHHHHHHH
Q 010830 460 RRILIYEVTMHKLKKAFYNESRS--MRDIFDSLE 491 (499)
Q Consensus 460 ~~~~p~~~~~~~ll~~~~~~g~~--a~~~~~~~~ 491 (499)
+|..+|+.++.+|++.|+. |.++|++|.
T Consensus 453 ----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~ 482 (857)
T PLN03077 453 ----KDVISWTSIIAGLRLNNRCFEALIFFRQML 482 (857)
T ss_pred ----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2344555555555555544 444554444
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.2e-58 Score=481.49 Aligned_cols=409 Identities=20% Similarity=0.215 Sum_probs=315.0
Q ss_pred hhHHHHHHhcCCCCCHHHHHHHHHhh--cCCchhHHHHHHHhcC-CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 010830 66 DDIESALACTGIIPTPDLVHEVLQLS--YDSPSSAVDFFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED 142 (499)
Q Consensus 66 ~~l~~~l~~~~~~~~~~~~~~~l~~~--~~~~~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 142 (499)
.++...|...|+.|+..+++.+|..| .+++..+.+++..+.+ |..||..+||.+|.+|++.|+++.|.++|++|.+
T Consensus 172 ~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~- 250 (857)
T PLN03077 172 LCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR- 250 (857)
T ss_pred HHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC-
Confidence 45677777888999999998888865 3456777777776654 7788888888888888888888888888888865
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhc-cCCCCHHHHH
Q 010830 143 GVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFA 221 (499)
Q Consensus 143 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~ 221 (499)
+|..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++. |+.+.+.+++..+.+ |+.||..+|+
T Consensus 251 --~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~-g~~~~a~~l~~~~~~~g~~~d~~~~n 327 (857)
T PLN03077 251 --RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELL-GDERLGREMHGYVVKTGFAVDVSVCN 327 (857)
T ss_pred --CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-CChHHHHHHHHHHHHhCCccchHHHH
Confidence 366788888888888888888888888888888888888888888888888 888888888888765 7888888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHH
Q 010830 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301 (499)
Q Consensus 222 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 301 (499)
.++.+|++.|++++|.++|++|.+. |..+|+++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++
T Consensus 328 ~Li~~y~k~g~~~~A~~vf~~m~~~------d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~ 401 (857)
T PLN03077 328 SLIQMYLSLGSWGEAEKVFSRMETK------DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACAC 401 (857)
T ss_pred HHHHHHHhcCCHHHHHHHHhhCCCC------CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhc
Confidence 8888888888888888888888543 6778888888888888888888888888888888888888888888888
Q ss_pred cCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHH
Q 010830 302 LNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 381 (499)
Q Consensus 302 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 381 (499)
.|+++.|.++++.+.+.| +.|+..+||+||.+|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|.
T Consensus 402 ~g~~~~a~~l~~~~~~~g--~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~ 475 (857)
T PLN03077 402 LGDLDVGVKLHELAERKG--LISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEAL 475 (857)
T ss_pred cchHHHHHHHHHHHHHhC--CCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHH
Confidence 888888888888888888 788888888888888888888888888888754 56677777777777777777777
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCC------------------------------CChH
Q 010830 382 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI------------------------------LPLE 431 (499)
Q Consensus 382 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~------------------------------~p~~ 431 (499)
.+|++|.+ ++.||..||+.++.+|++.|+++.+.+++..+.+.|+ .+|.
T Consensus 476 ~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~ 554 (857)
T PLN03077 476 IFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDV 554 (857)
T ss_pred HHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCCh
Confidence 77777764 4566666555555544444444444444444333332 4455
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc--hHHHHHHHH
Q 010830 432 ASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS--MRDIFDSLE 491 (499)
Q Consensus 432 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~--a~~~~~~~~ 491 (499)
.+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.. |.++|++|.
T Consensus 555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 666666666666777777777777777777777777777777777777666 666666666
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=1.6e-25 Score=238.26 Aligned_cols=385 Identities=14% Similarity=0.103 Sum_probs=245.8
Q ss_pred cCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 010830 92 YDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171 (499)
Q Consensus 92 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 171 (499)
.|+++.|.+.|+.+....+.+..++..+...+.+.|+.++|...|+++.+.++.+...+..++..|...|++++|.++++
T Consensus 512 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 591 (899)
T TIGR02917 512 EGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILN 591 (899)
T ss_pred CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44555555555555444444555555555555555555555555555555555455555555555666666666666666
Q ss_pred HHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCC
Q 010830 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251 (499)
Q Consensus 172 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 251 (499)
.+.+.. +.+...|..+...+... |++++|...|+.+.+..+.+...+..+...|.+.|++++|...|+++.+ ..|
T Consensus 592 ~~~~~~-~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~ 666 (899)
T TIGR02917 592 EAADAA-PDSPEAWLMLGRAQLAA-GDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALE---LKP 666 (899)
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCC
Confidence 555432 33455555566666655 6666666666665544444555566666666666666666666666643 245
Q ss_pred chHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHH
Q 010830 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA 331 (499)
Q Consensus 252 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 331 (499)
++..++..++..+...|++++|.++++.+.+.+ +.+...+..+...+...|++++|.+.++.+.+.+ |+..++..
T Consensus 667 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~ 741 (899)
T TIGR02917 667 DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA----PSSQNAIK 741 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC----CCchHHHH
Confidence 555566666666666666666666666665544 2344555666666666777777777777666643 34455666
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCC
Q 010830 332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411 (499)
Q Consensus 332 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 411 (499)
+...+.+.|++++|.+.++++.+.. +.+...+..+...|...|+.++|..+|+++.+.. +.+..++..+...+...|+
T Consensus 742 l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 819 (899)
T TIGR02917 742 LHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD 819 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc
Confidence 6667777777777777777766642 2355666667777777777777777777777654 3456667777777777777
Q ss_pred hhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc--hHHHHHH
Q 010830 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS--MRDIFDS 489 (499)
Q Consensus 412 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~--a~~~~~~ 489 (499)
.+|...++++.+.. +-+..++..+...+...|++++|.++++++.+.+.. +..++..+..++.+.|+. |.++++.
T Consensus 820 -~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 896 (899)
T TIGR02917 820 -PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDK 896 (899)
T ss_pred -HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66777777776643 234455667777788889999999999999887644 788888889999999988 8777777
Q ss_pred HH
Q 010830 490 LE 491 (499)
Q Consensus 490 ~~ 491 (499)
|+
T Consensus 897 ~~ 898 (899)
T TIGR02917 897 LL 898 (899)
T ss_pred Hh
Confidence 65
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=1.2e-24 Score=231.44 Aligned_cols=386 Identities=12% Similarity=0.085 Sum_probs=191.5
Q ss_pred CCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010830 93 DSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172 (499)
Q Consensus 93 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 172 (499)
|+.+.|.+.|+.+.+..+.+...+..+...+...|++++|.+.|+.+.+.++.+..++..+...+.+.|++++|..++++
T Consensus 479 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 558 (899)
T TIGR02917 479 GDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEK 558 (899)
T ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444444444443333333444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCc
Q 010830 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252 (499)
Q Consensus 173 m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 252 (499)
+.+.+ +.+...+..+...+... |++++|..+++.+.+..+.+...|..+...|.+.|++++|.+.|+++.+. .|+
T Consensus 559 ~~~~~-~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~ 633 (899)
T TIGR02917 559 AAELN-PQEIEPALALAQYYLGK-GQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL---QPD 633 (899)
T ss_pred HHHhC-ccchhHHHHHHHHHHHC-CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC
Confidence 43332 22333344444444444 55555555555544444444455555555555555555555555555332 333
Q ss_pred hHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHH
Q 010830 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAV 332 (499)
Q Consensus 253 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 332 (499)
+...+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++|.++++.+.+.. +.+...+..+
T Consensus 634 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~ 709 (899)
T TIGR02917 634 SALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH---PKAALGFELE 709 (899)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---cCChHHHHHH
Confidence 44445555555555555555555555544432 1234444555555555555555555555555443 3344455555
Q ss_pred HHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCh
Q 010830 333 IGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412 (499)
Q Consensus 333 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 412 (499)
...+.+.|++++|.+.|+++...+ |+..++..+..++.+.|++++|.+.++.+.+.. +.+...+..+...|...|++
T Consensus 710 ~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~ 786 (899)
T TIGR02917 710 GDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDY 786 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 555555555555555555555432 333444455555555555555555555555532 23444555555555555666
Q ss_pred hHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc--hHHHHHHH
Q 010830 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS--MRDIFDSL 490 (499)
Q Consensus 413 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~--a~~~~~~~ 490 (499)
++|.++|+++.+.. +.+..+++.+...+.+.|+ ++|..+++++.+.. +-+..++..+...+...|+. |.+.++++
T Consensus 787 ~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 863 (899)
T TIGR02917 787 DKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKA 863 (899)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666555533 2344555555555555555 55666665555432 12334445555556666665 66666665
Q ss_pred HHH
Q 010830 491 ERR 493 (499)
Q Consensus 491 ~~~ 493 (499)
++.
T Consensus 864 ~~~ 866 (899)
T TIGR02917 864 VNI 866 (899)
T ss_pred Hhh
Confidence 553
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=1.2e-22 Score=194.21 Aligned_cols=310 Identities=13% Similarity=0.160 Sum_probs=165.4
Q ss_pred CCCCCHHHHHHHHHhhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC----HHHHH
Q 010830 76 GIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS----LPTFA 151 (499)
Q Consensus 76 ~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~----~~~~~ 151 (499)
........+..+.....++++.|...|..+.+..+.+..++..+...+.+.|++++|..+++.+.+.+..+ ..++.
T Consensus 32 ~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 111 (389)
T PRK11788 32 SNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQ 111 (389)
T ss_pred hhhccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 33344444444444455566666666666655444555566666666666666666666666665543211 23455
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCC-----HHHHHHHHHH
Q 010830 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPD-----GDSFAILLEG 226 (499)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~ll~~ 226 (499)
.+...|.+.|++++|.++|+++.+.. ..+..+++.+...+... |++++|.+.++.+.+..+.+ ...+..+...
T Consensus 112 ~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 189 (389)
T PRK11788 112 ELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQE-KDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQ 189 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHh-chHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 55666666666666666666665432 23445555566666655 66666666666554421111 1123444555
Q ss_pred HHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHh
Q 010830 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306 (499)
Q Consensus 227 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 306 (499)
+.+.|++++|.+.|+++.+. .|++...+..+...+.+.|++++|.++|+++.+.+......++..++.+|.+.|+.+
T Consensus 190 ~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 266 (389)
T PRK11788 190 ALARGDLDAARALLKKALAA---DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEA 266 (389)
T ss_pred HHhCCCHHHHHHHHHHHHhH---CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHH
Confidence 55566666666666665432 344444555555666666666666666666554331111234455555566666666
Q ss_pred HHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh---cCCHhHHHHH
Q 010830 307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK---NKRVHEVEKF 383 (499)
Q Consensus 307 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~---~g~~~~a~~~ 383 (499)
+|.+.++.+.+.. |+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.+++..+
T Consensus 267 ~A~~~l~~~~~~~----p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~ 340 (389)
T PRK11788 267 EGLEFLRRALEEY----PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLL 340 (389)
T ss_pred HHHHHHHHHHHhC----CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHH
Confidence 6666666555532 34444455555555666666666666555542 3555555555554443 3355555566
Q ss_pred HHHHHHCCCCCCh
Q 010830 384 FHEMIKNEWQPTP 396 (499)
Q Consensus 384 ~~~~~~~~~~p~~ 396 (499)
++.|.+.++.|++
T Consensus 341 ~~~~~~~~~~~~p 353 (389)
T PRK11788 341 LRDLVGEQLKRKP 353 (389)
T ss_pred HHHHHHHHHhCCC
Confidence 6555555444443
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=1.1e-21 Score=187.57 Aligned_cols=304 Identities=12% Similarity=0.050 Sum_probs=185.3
Q ss_pred HHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHH
Q 010830 122 VLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSR 201 (499)
Q Consensus 122 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~ 201 (499)
.+...|++++|+..|.++.+.++.+..++..+...+...|++++|..+++.+...+..++.
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~------------------- 104 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTRE------------------- 104 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHH-------------------
Confidence 3455566666666666666666555556666666666666666666666666543211110
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHh
Q 010830 202 ALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281 (499)
Q Consensus 202 a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 281 (499)
....++..+...|.+.|++++|.++|+++.+. .|.+..+++.++..+.+.|++++|.+.++.+.
T Consensus 105 -------------~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 168 (389)
T PRK11788 105 -------------QRLLALQELGQDYLKAGLLDRAEELFLQLVDE---GDFAEGALQQLLEIYQQEKDWQKAIDVAERLE 168 (389)
T ss_pred -------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC---CcchHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 00123444555555555555555555555432 33344555556666666666666666666555
Q ss_pred hCCCCCC----HhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCC
Q 010830 282 GENCFPT----LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGA 357 (499)
Q Consensus 282 ~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 357 (499)
+.+..++ ...+..+...+.+.|++++|.+.++++.+.. +.+...+..+...|.+.|++++|.++|+++.+.+.
T Consensus 169 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 245 (389)
T PRK11788 169 KLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD---PQCVRASILLGDLALAQGDYAAAIEALERVEEQDP 245 (389)
T ss_pred HhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC---cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh
Confidence 4432211 1123445556666777777777777766643 23455666677777777777777777777776432
Q ss_pred CCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHH
Q 010830 358 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 437 (499)
Q Consensus 358 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 437 (499)
.....+++.+..+|...|++++|...++++.+.. |+...+..+...+.+.|++++|..+++++.+. .|+...++.+
T Consensus 246 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l 321 (389)
T PRK11788 246 EYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRL 321 (389)
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHH
Confidence 2223456677777777777777777777777653 55555677777777777788888777777663 5667777777
Q ss_pred HHHHHh---CCChHHHHHHHHHHHHcCCccCHH
Q 010830 438 LVGLRN---LGRLSDVRRFAEEMLNRRILIYEV 467 (499)
Q Consensus 438 l~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~ 467 (499)
+..+.. .|+.+++..++++|.++++.|++.
T Consensus 322 ~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 322 LDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 766554 457777777777777766665554
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=1.7e-18 Score=173.63 Aligned_cols=371 Identities=11% Similarity=0.027 Sum_probs=279.1
Q ss_pred hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010830 90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS 169 (499)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 169 (499)
...|+.+.|+.+++.+....+-+...+..++.+....|++++|...|+++.+..+.+...+..+...+...|++++|.+.
T Consensus 53 ~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~ 132 (656)
T PRK15174 53 LRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADL 132 (656)
T ss_pred HhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 45799999999998887777777778888888888999999999999999999988888999999999999999999999
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCC
Q 010830 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW 249 (499)
Q Consensus 170 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 249 (499)
+++..+.. +.+...+..+...+... |+.++|...++.+....+.+...+..+. .+...|++++|...++.+.+. .-
T Consensus 133 l~~Al~l~-P~~~~a~~~la~~l~~~-g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~-~~ 208 (656)
T PRK15174 133 AEQAWLAF-SGNSQIFALHLRTLVLM-DKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPF-FA 208 (656)
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHC-CChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhc-CC
Confidence 99998752 33466777788888888 9999999999887654444555554443 478899999999999998664 11
Q ss_pred CCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhH----HHHHHHHHHhcCCCCCCC
Q 010830 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH----AVQLWDIMVGIGFNLMPN 325 (499)
Q Consensus 250 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~ 325 (499)
+++...+..+...+.+.|++++|+..+++..+.. +.+...+..+...+...|+.++ |...+++..+.. +.+
T Consensus 209 -~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~---P~~ 283 (656)
T PRK15174 209 -LERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN---SDN 283 (656)
T ss_pred -CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC---CCC
Confidence 1233455566788889999999999999988765 3356677788899999999885 899999998864 456
Q ss_pred HhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCh-hhHHHHHH
Q 010830 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP-LNCATAIT 404 (499)
Q Consensus 326 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~li~ 404 (499)
...+..+...+.+.|++++|...+++..+... -+...+..+..++.+.|++++|...|+.+.+.. |+. ..+..+..
T Consensus 284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~ 360 (656)
T PRK15174 284 VRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAA 360 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHH
Confidence 78899999999999999999999999887532 234567778888999999999999999998754 443 33444566
Q ss_pred HHhccCChhHHHHHHHHHHHCCCCChHHHHHHHH----HHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHH
Q 010830 405 MLLDADEPEIAIEIWNYILENGILPLEASANELL----VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472 (499)
Q Consensus 405 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll----~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 472 (499)
++...|+.++|...|+...+....--...|...+ .++...+..++......++.-.+-..|..+|+.-
T Consensus 361 al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 432 (656)
T PRK15174 361 ALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVNLPPERLDWAWEVAGRQSGIERDEWERR 432 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcCCccchhhHHHHHhcccccCChHHHHHH
Confidence 7888999999999999988643221122222222 2233334443333444444444444555555544
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=1.3e-19 Score=166.28 Aligned_cols=355 Identities=13% Similarity=0.128 Sum_probs=224.2
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 010830 110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLL 189 (499)
Q Consensus 110 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 189 (499)
+--.++|..+...+-..|+++.|+.+|+.+.+..+..++.|..+..++...|+.+.|.+.|.+..+. .|+.....+-+
T Consensus 113 ~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~l 190 (966)
T KOG4626|consen 113 PQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDL 190 (966)
T ss_pred chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcch
Confidence 3344566667777777777777777777777666666666777777777777777777666666543 45555544444
Q ss_pred HHHHccCCchHHHHHHHHH----------------------------------HhccCCCCHHHHHHHHHHHHhcCCHHH
Q 010830 190 SAICRQENQTSRALEFLNR----------------------------------VKKIVDPDGDSFAILLEGWEKEGNVEE 235 (499)
Q Consensus 190 ~~~~~~~~~~~~a~~~~~~----------------------------------~~~~~~~~~~~~~~ll~~~~~~g~~~~ 235 (499)
..+.+..|++++|...|.+ ..+-.+.=...|..|...|...+.+++
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchH
Confidence 4444433555555554444 433222223445555555555555555
Q ss_pred HHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHHcCCHhHHHHHHHH
Q 010830 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT-LKFFSNALDILVKLNDSTHAVQLWDI 314 (499)
Q Consensus 236 a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~ 314 (499)
|...|.+.. ...|+....+..+...|...|.++.|+..|++..+.. |+ ...|+.|..++-..|++.+|++.|..
T Consensus 271 Avs~Y~rAl---~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~--P~F~~Ay~NlanALkd~G~V~ea~~cYnk 345 (966)
T KOG4626|consen 271 AVSCYLRAL---NLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ--PNFPDAYNNLANALKDKGSVTEAVDCYNK 345 (966)
T ss_pred HHHHHHHHH---hcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC--CCchHHHhHHHHHHHhccchHHHHHHHHH
Confidence 555555542 3355455555555555555566666666666555433 32 45677777777777888888888877
Q ss_pred HHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 010830 315 MVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS-LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393 (499)
Q Consensus 315 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 393 (499)
.+... +-.....+.|...|...|.++.|..+|....+ +.|.- ...+.|...|-+.|++++|+..+++.++ +.
T Consensus 346 aL~l~---p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~ 418 (966)
T KOG4626|consen 346 ALRLC---PNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IK 418 (966)
T ss_pred HHHhC---CccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cC
Confidence 77753 33566777777888888888888888877766 34443 4567777778888888888888887776 34
Q ss_pred CC-hhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChH-HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCH-HHHH
Q 010830 394 PT-PLNCATAITMLLDADEPEIAIEIWNYILENGILPLE-ASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYE-VTMH 470 (499)
Q Consensus 394 p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~ 470 (499)
|+ ...|+.+...|...|+.+.|.+.+.+.+. +.|.- ..++.|...|-..|+..+|+.-+++.++. +||. ..|.
T Consensus 419 P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~c 494 (966)
T KOG4626|consen 419 PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYC 494 (966)
T ss_pred chHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhh
Confidence 54 44677777788888888888888887776 33432 45666777788888888888888887743 4543 3455
Q ss_pred HHHHHHHhcccc
Q 010830 471 KLKKAFYNESRS 482 (499)
Q Consensus 471 ~ll~~~~~~g~~ 482 (499)
.++.++.--.+|
T Consensus 495 Nllh~lq~vcdw 506 (966)
T KOG4626|consen 495 NLLHCLQIVCDW 506 (966)
T ss_pred HHHHHHHHHhcc
Confidence 555554443333
No 13
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.88 E-value=1e-17 Score=179.62 Aligned_cols=388 Identities=9% Similarity=0.019 Sum_probs=259.1
Q ss_pred hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC--HHHHH------------HHHH
Q 010830 90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS--LPTFA------------SIFD 155 (499)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~------------~li~ 155 (499)
...|++++|...|+.+.+..+.+..++..+...+.+.|++++|+..|++..+..+.+ ...|. ....
T Consensus 280 ~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~ 359 (1157)
T PRK11447 280 VDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGD 359 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHH
Confidence 456889999999998887777788999999999999999999999999988776422 12221 2244
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHH--------
Q 010830 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW-------- 227 (499)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~-------- 227 (499)
.+.+.|++++|++.|++..+.. +.+...+..+-..+... |++++|++.|+++.+..+.+...+..+...|
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~-g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A 437 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMAR-KDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKA 437 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHH
Confidence 6778899999999999988763 34556666777778877 9999999999988765555555554444443
Q ss_pred ----------------------------------HhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHH
Q 010830 228 ----------------------------------EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273 (499)
Q Consensus 228 ----------------------------------~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a 273 (499)
...|++++|.+.|++..+. .|++...+..+...|.+.|++++|
T Consensus 438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~---~P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL---DPGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 3345555555555555332 444444555555555555555555
Q ss_pred HHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCH---------hHHHHHHHHHHcCCChHH
Q 010830 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNL---------IMYNAVIGLLCNNDDVDN 344 (499)
Q Consensus 274 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---------~~~~~li~~~~~~~~~~~ 344 (499)
+..++++.+.. +.+...+..+...+...++.++|...++.+.... ..++. ..+..+...+...|+.++
T Consensus 515 ~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~--~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 515 DALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQ--WNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchh--cChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 55555554322 1122222222333444555555555555433221 11111 111233445666677777
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 010830 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 424 (499)
Q Consensus 345 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 424 (499)
|.++++. .+.+...+..+...+.+.|++++|+..|+..++.. +.+...+..+...+...|++++|.+.++.+.+
T Consensus 592 A~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 592 AEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 7776651 23455566778888899999999999999998864 33677888899999999999999999998876
Q ss_pred CCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC--cc---CHHHHHHHHHHHHhcccc--hHHHHHHHHH
Q 010830 425 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI--LI---YEVTMHKLKKAFYNESRS--MRDIFDSLER 492 (499)
Q Consensus 425 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~p---~~~~~~~ll~~~~~~g~~--a~~~~~~~~~ 492 (499)
.. ..+...+..+..++...|++++|.++++++....- .| +...+..+...+...|+. |++.|+..+.
T Consensus 666 ~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 666 TA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred cC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 42 23445566677888899999999999999886532 22 224566667778888888 8888877754
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=1.1e-18 Score=160.30 Aligned_cols=334 Identities=13% Similarity=0.059 Sum_probs=271.6
Q ss_pred hcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCC-------------------------
Q 010830 91 SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL------------------------- 145 (499)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~------------------------- 145 (499)
..|+.++|+.+++.+.+..+.....|..+..++.+.|+.+.|.+.|.+..+.++.
T Consensus 128 erg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred HhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHH
Confidence 3577788888888777766777788888888888888888888877776665531
Q ss_pred ---------CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC-HHHHHHHHHHHHccCCchHHHHHHHHHHhccCCC
Q 010830 146 ---------SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD-VVAVNSLLSAICRQENQTSRALEFLNRVKKIVDP 215 (499)
Q Consensus 146 ---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~ 215 (499)
=...|..|...+-..|++..|++-|++.++. .|+ ...|-.|-..|... +.+++|...|.+...--+.
T Consensus 208 lkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~-~~~d~Avs~Y~rAl~lrpn 284 (966)
T KOG4626|consen 208 LKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEA-RIFDRAVSCYLRALNLRPN 284 (966)
T ss_pred HHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHH-hcchHHHHHHHHHHhcCCc
Confidence 1223555555667778888888888887765 444 56778888888888 9999999999888766667
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHH
Q 010830 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295 (499)
Q Consensus 216 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 295 (499)
....+..+...|...|++|-|++.|++..+ +.|.-...|+.|..++-..|++.+|...|.+..... +--....+.|
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~---~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NL 360 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALE---LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNL 360 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHh---cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHH
Confidence 788999999999999999999999999954 588778899999999999999999999999887754 2235678889
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhc
Q 010830 296 LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS-LTYNMIFECLIKN 374 (499)
Q Consensus 296 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~ 374 (499)
...|...|.++.|..+|....+-. +-=...++.|...|-+.|++++|+..|++..+ ++|+- ..|+.+...|-..
T Consensus 361 gni~~E~~~~e~A~~ly~~al~v~---p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALEVF---PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHhhC---hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHh
Confidence 999999999999999999998842 33466889999999999999999999999988 77775 6899999999999
Q ss_pred CCHhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChH-HHHHHHHHH
Q 010830 375 KRVHEVEKFFHEMIKNEWQPT-PLNCATAITMLLDADEPEIAIEIWNYILENGILPLE-ASANELLVG 440 (499)
Q Consensus 375 g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~ 440 (499)
|+.+.|...+.+.+..+ |. ...++.|...|-..|++.+|+.-++...+ ++||. ..|..++.+
T Consensus 436 g~v~~A~q~y~rAI~~n--Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQIN--PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHC 499 (966)
T ss_pred hhHHHHHHHHHHHHhcC--cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHH
Confidence 99999999999998854 43 56788999999999999999999999987 44543 334444444
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=2.5e-17 Score=165.85 Aligned_cols=393 Identities=13% Similarity=0.091 Sum_probs=230.0
Q ss_pred hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010830 90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS 169 (499)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 169 (499)
...++++.|+..|+.+.. ..|+...|..+..+|.+.|++++|++.++...+.++.+...|..+..+|...|++++|+..
T Consensus 138 ~~~~~~~~Ai~~y~~al~-~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~ 216 (615)
T TIGR00990 138 YRNKDFNKAIKLYSKAIE-CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLD 216 (615)
T ss_pred HHcCCHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 346899999999998766 4457889999999999999999999999999999888889999999999999999999988
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhcc----------------------------CCCC-HHHH
Q 010830 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI----------------------------VDPD-GDSF 220 (499)
Q Consensus 170 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~----------------------------~~~~-~~~~ 220 (499)
|......+-..+. ....++..+... .....+...++.-... ..+. ...+
T Consensus 217 ~~~~~~~~~~~~~-~~~~~~~~~l~~-~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (615)
T TIGR00990 217 LTASCIIDGFRNE-QSAQAVERLLKK-FAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQ 294 (615)
T ss_pred HHHHHHhCCCccH-HHHHHHHHHHHH-HHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccch
Confidence 8766443211111 111111111000 0001111111000000 0000 0000
Q ss_pred HHHHHH---HHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCC-HhhHHHHH
Q 010830 221 AILLEG---WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT-LKFFSNAL 296 (499)
Q Consensus 221 ~~ll~~---~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li 296 (499)
..+... ....+++++|.+.|+...+.....|.....|+.+...+...|++++|+..|++..+.. |+ ...|..+.
T Consensus 295 ~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~--P~~~~~~~~la 372 (615)
T TIGR00990 295 LQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD--PRVTQSYIKRA 372 (615)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHH
Confidence 000000 0123456666666666655322345455566666666666777777777776665543 33 34555666
Q ss_pred HHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 010830 297 DILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376 (499)
Q Consensus 297 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 376 (499)
..+...|++++|...++.+++.. +.+..+|..+...+...|++++|...|++..+.. +.+...+..+...+.+.|+
T Consensus 373 ~~~~~~g~~~eA~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~ 448 (615)
T TIGR00990 373 SMNLELGDPDKAEEDFDKALKLN---SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGS 448 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCC
Confidence 66666677777777777666643 3345666666666677777777777777666532 1234455556666666777
Q ss_pred HhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHH------HHHHHHHHHHhCCChHHH
Q 010830 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA------SANELLVGLRNLGRLSDV 450 (499)
Q Consensus 377 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~------~~~~ll~~~~~~g~~~~a 450 (499)
+++|+..|++.++.. +-+...+..+...+...|++++|.+.|+...+..-..+.. .++.....+...|++++|
T Consensus 449 ~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA 527 (615)
T TIGR00990 449 IASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEA 527 (615)
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHH
Confidence 777777777666532 2235566666666666777777777776666532111110 111112223334667777
Q ss_pred HHHHHHHHHcCCccCHHHHHHHHHHHHhcccc--hHHHHHHHHHH
Q 010830 451 RRFAEEMLNRRILIYEVTMHKLKKAFYNESRS--MRDIFDSLERR 493 (499)
Q Consensus 451 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~--a~~~~~~~~~~ 493 (499)
.+++++..+.+. -+...+..+...+.+.|+. |++.|++..+.
T Consensus 528 ~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 528 ENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 777766665431 2334566666666666666 66666665544
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=1.6e-17 Score=166.81 Aligned_cols=309 Identities=11% Similarity=0.014 Sum_probs=242.2
Q ss_pred HHHhcCCCCCHHHHHHHHHhhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHH
Q 010830 71 ALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTF 150 (499)
Q Consensus 71 ~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 150 (499)
.+...+-.++......+.....|+.+.|...|+.+....+.+...|..+...+.+.|++++|...|+++.+..+.+...+
T Consensus 68 ~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~ 147 (656)
T PRK15174 68 RVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIF 147 (656)
T ss_pred HHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 33333433333333333335689999999999988887888888999999999999999999999999999888888899
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCC-CCHHHHHHHHHHHHh
Q 010830 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD-PDGDSFAILLEGWEK 229 (499)
Q Consensus 151 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~ll~~~~~ 229 (499)
..+...+...|++++|...++.+.... +.+...+..+ ..+... |++++|...++.+.+..+ ++...+..+...+.+
T Consensus 148 ~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~-g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~ 224 (656)
T PRK15174 148 ALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNK-SRLPEDHDLARALLPFFALERQESAGLAVDTLCA 224 (656)
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHc-CCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH
Confidence 999999999999999999999886653 2223333333 346667 999999999998766432 344455566778889
Q ss_pred cCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHH----HHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCH
Q 010830 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE----ALKFLRVMKGENCFPTLKFFSNALDILVKLNDS 305 (499)
Q Consensus 230 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 305 (499)
.|++++|.+.+++..+. .|++...+..+...+...|++++ |+..|++..+.. +.+...+..+...+.+.|++
T Consensus 225 ~g~~~eA~~~~~~al~~---~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~ 300 (656)
T PRK15174 225 VGKYQEAIQTGESALAR---GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQN 300 (656)
T ss_pred CCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCH
Confidence 99999999999998654 67788889999999999999885 789999888754 33567888889999999999
Q ss_pred hHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHh-HHHHHHHHHhcCCHhHHHHHH
Q 010830 306 THAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLT-YNMIFECLIKNKRVHEVEKFF 384 (499)
Q Consensus 306 ~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~g~~~~a~~~~ 384 (499)
++|...+++..+.. +.+...+..+...|.+.|++++|...|+++.+. .|+... +..+..++...|+.++|...|
T Consensus 301 ~eA~~~l~~al~l~---P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l 375 (656)
T PRK15174 301 EKAIPLLQQSLATH---PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVF 375 (656)
T ss_pred HHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999998864 445677888889999999999999999998874 345433 344566788999999999999
Q ss_pred HHHHHCC
Q 010830 385 HEMIKNE 391 (499)
Q Consensus 385 ~~~~~~~ 391 (499)
++..+..
T Consensus 376 ~~al~~~ 382 (656)
T PRK15174 376 EHYIQAR 382 (656)
T ss_pred HHHHHhC
Confidence 9988763
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.87 E-value=3.2e-17 Score=175.77 Aligned_cols=355 Identities=11% Similarity=0.052 Sum_probs=195.0
Q ss_pred HhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc-CHHHHHH------------HHH
Q 010830 124 GKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQ-DVVAVNS------------LLS 190 (499)
Q Consensus 124 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~------------ll~ 190 (499)
...|++++|+..|++..+..+.+..++..+...|.+.|++++|+..|++..+..-.. ....+.. .-.
T Consensus 280 ~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~ 359 (1157)
T PRK11447 280 VDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGD 359 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHH
Confidence 334444555555544444444444444444444555555555555554444321100 0011110 011
Q ss_pred HHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCH
Q 010830 191 AICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270 (499)
Q Consensus 191 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~ 270 (499)
.+.+. |++++|+..|+++....+.+...+..+...+...|++++|++.|++..+. .|++...+..+...|. .++.
T Consensus 360 ~~~~~-g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~---~p~~~~a~~~L~~l~~-~~~~ 434 (1157)
T PRK11447 360 AALKA-NNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM---DPGNTNAVRGLANLYR-QQSP 434 (1157)
T ss_pred HHHHC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHH-hcCH
Confidence 22333 44555555554444433334444444444555555555555555544332 3333333333333322 1223
Q ss_pred HHHHHHHHHHhhCCCC--------CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCCh
Q 010830 271 DEALKFLRVMKGENCF--------PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV 342 (499)
Q Consensus 271 ~~a~~~~~~m~~~~~~--------p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 342 (499)
++|+.+++.+...... .....+..+...+...|++++|.+.+++.++.. +-+...+..+...|.+.|++
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~---P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD---PGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCH
Confidence 3333333222110000 000112223344556788888888888877754 33566677777778888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHH--------------------------------------------HHHHHhcCCHh
Q 010830 343 DNVFRFFDQMVFHGAFPDSLTYNMI--------------------------------------------FECLIKNKRVH 378 (499)
Q Consensus 343 ~~a~~~~~~m~~~g~~p~~~~~~~l--------------------------------------------l~~~~~~g~~~ 378 (499)
++|...++++.+... -+...+..+ ...+...|+.+
T Consensus 512 ~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 512 SQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 888888887765321 122222222 23344455555
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 010830 379 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458 (499)
Q Consensus 379 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 458 (499)
+|..+++. .+.+...+..+...+.+.|++++|.+.|+...+.. +.+...+..+...|...|++++|.+.++...
T Consensus 591 eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 591 EAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 55555541 23455567778888899999999999999998854 3466788889999999999999999999887
Q ss_pred HcCCccCHHHHHHHHHHHHhcccc--hHHHHHHHHHHH
Q 010830 459 NRRILIYEVTMHKLKKAFYNESRS--MRDIFDSLERRC 494 (499)
Q Consensus 459 ~~~~~p~~~~~~~ll~~~~~~g~~--a~~~~~~~~~~~ 494 (499)
+.. +-+..++..+..++...|+. |.+.++.+++..
T Consensus 665 ~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 665 ATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred ccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 542 12445566777888888888 989998887653
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=1.2e-16 Score=163.84 Aligned_cols=392 Identities=9% Similarity=0.008 Sum_probs=222.5
Q ss_pred hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010830 90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS 169 (499)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 169 (499)
...|+.++|++++.......+.+...+..+...+.+.|++++|.++|++..+..+.+...+..++..+...|++++|+..
T Consensus 26 ~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~ 105 (765)
T PRK10049 26 LWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVK 105 (765)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 44667777777776665445555666777777777777777777777777766666666666777777777777777777
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCC
Q 010830 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW 249 (499)
Q Consensus 170 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 249 (499)
+++..+.. +.+.. +..+...+... |+.++|+..++++.+..+.+...+..+...+...|..+.|.+.++....
T Consensus 106 l~~~l~~~-P~~~~-~~~la~~l~~~-g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---- 178 (765)
T PRK10049 106 AKQLVSGA-PDKAN-LLALAYVYKRA-GRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL---- 178 (765)
T ss_pred HHHHHHhC-CCCHH-HHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC----
Confidence 77776551 22333 55555555556 7777777777777665555666666666666667777777766665432
Q ss_pred CCch-----HHhHHHHHHHHhc-----CCCH---HHHHHHHHHHhhC-CCCCCHh-hHH----HHHHHHHHcCCHhHHHH
Q 010830 250 NPEH-----VLAYETFLITLIR-----GKQV---DEALKFLRVMKGE-NCFPTLK-FFS----NALDILVKLNDSTHAVQ 310 (499)
Q Consensus 250 ~p~~-----~~~~~~li~~~~~-----~~~~---~~a~~~~~~m~~~-~~~p~~~-~~~----~li~~~~~~~~~~~a~~ 310 (499)
.|+. ......++..... .+++ ++|++.++.+.+. ...|+.. .+. ..+.++...|+.++|+.
T Consensus 179 ~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~ 258 (765)
T PRK10049 179 TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVIS 258 (765)
T ss_pred CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 2210 0011122222211 1223 5566666666543 1122211 111 11233445567777777
Q ss_pred HHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC---CHHhHHHHHHHHHhcCCHhHHHHHHHHH
Q 010830 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFP---DSLTYNMIFECLIKNKRVHEVEKFFHEM 387 (499)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 387 (499)
.|+.+.+.+.. .|+. ....+...|...|++++|+..|+++.+..... .......+..++...|++++|..+++.+
T Consensus 259 ~~~~ll~~~~~-~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~ 336 (765)
T PRK10049 259 EYQRLKAEGQI-IPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHT 336 (765)
T ss_pred HHHHhhccCCC-CCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 77776665410 1221 11123556666777777777777665532110 1233444555666777777777777766
Q ss_pred HHCCC-----------CCC---hhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHH
Q 010830 388 IKNEW-----------QPT---PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 453 (499)
Q Consensus 388 ~~~~~-----------~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 453 (499)
.+... .|+ ...+..+...+...|++++|.++++++.+.. +-+...+..+...+...|++++|++.
T Consensus 337 ~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~ 415 (765)
T PRK10049 337 INNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENE 415 (765)
T ss_pred hhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 65321 112 1233445556666677777777777766532 33455666666666677777777777
Q ss_pred HHHHHHcCCccC-HHHHHHHHHHHHhcccc--hHHHHHHHHHH
Q 010830 454 AEEMLNRRILIY-EVTMHKLKKAFYNESRS--MRDIFDSLERR 493 (499)
Q Consensus 454 ~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~--a~~~~~~~~~~ 493 (499)
+++..+.. |+ ...+......+.+.|++ |..++++++++
T Consensus 416 l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 416 LKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 77666543 43 34444455556666666 66666665543
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=2.1e-16 Score=162.12 Aligned_cols=376 Identities=10% Similarity=0.050 Sum_probs=280.7
Q ss_pred HhhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 010830 89 QLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVM 168 (499)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 168 (499)
....+++++|..+|+.+....+.+...+..+...+...|++++|+..+++..+..+.+.. +..+..++...|+.++|+.
T Consensus 59 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~ 137 (765)
T PRK10049 59 YRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELR 137 (765)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHH
Confidence 356799999999999988777888889999999999999999999999999999888888 9999999999999999999
Q ss_pred HHHHHHhCCCCc-CHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCH------HHHHHHHHHHH-----hcCCH---
Q 010830 169 SFDVMSMHGVEQ-DVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG------DSFAILLEGWE-----KEGNV--- 233 (499)
Q Consensus 169 ~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~ll~~~~-----~~g~~--- 233 (499)
.++++.+. .| +...+..+...+... +..+.|+..++.+.. .|+. .....++..+. ..+++
T Consensus 138 ~l~~al~~--~P~~~~~~~~la~~l~~~-~~~e~Al~~l~~~~~--~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~a 212 (765)
T PRK10049 138 AMTQALPR--APQTQQYPTEYVQALRNN-RLSAPALGAIDDANL--TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIA 212 (765)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHC-CChHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHH
Confidence 99999886 45 444555666666666 999999999987664 2321 12222333332 22334
Q ss_pred HHHHHHHHHHhHccCCCCchHHhHH----HHHHHHhcCCCHHHHHHHHHHHhhCCCC-CCHhhHHHHHHHHHHcCCHhHH
Q 010830 234 EEANKTFGEMVERFEWNPEHVLAYE----TFLITLIRGKQVDEALKFLRVMKGENCF-PTLKFFSNALDILVKLNDSTHA 308 (499)
Q Consensus 234 ~~a~~~~~~~~~~~~~~p~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~~~~~~a 308 (499)
++|++.++.+.+.....|++...+. ..+..+...|++++|+..|+++.+.+-. |+. .-..+..+|...|++++|
T Consensus 213 d~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A 291 (765)
T PRK10049 213 DRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKA 291 (765)
T ss_pred HHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHH
Confidence 7788888888764344443321211 1134556779999999999999887632 332 222357789999999999
Q ss_pred HHHHHHHHhcCCCC-CCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCC-----------CCCH---HhHHHHHHHHHh
Q 010830 309 VQLWDIMVGIGFNL-MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGA-----------FPDS---LTYNMIFECLIK 373 (499)
Q Consensus 309 ~~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-----------~p~~---~~~~~ll~~~~~ 373 (499)
+..|+++.+..... .........+..++...|++++|..+++.+.+... .|+. ..+..+...+..
T Consensus 292 ~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~ 371 (765)
T PRK10049 292 QSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY 371 (765)
T ss_pred HHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH
Confidence 99999988654100 01134566777788999999999999999987421 1231 244566778889
Q ss_pred cCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHH
Q 010830 374 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 453 (499)
Q Consensus 374 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 453 (499)
.|+.++|+++++++.... +-+...+..+...+...|++++|++.+++..+.. +-+...+..+...+.+.|++++|..+
T Consensus 372 ~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~ 449 (765)
T PRK10049 372 SNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVL 449 (765)
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 999999999999998864 3457788889999999999999999999998844 23355666677788899999999999
Q ss_pred HHHHHHcCCccCHHHHHHHHHH
Q 010830 454 AEEMLNRRILIYEVTMHKLKKA 475 (499)
Q Consensus 454 ~~~m~~~~~~p~~~~~~~ll~~ 475 (499)
++++++. .|+......+-+.
T Consensus 450 ~~~ll~~--~Pd~~~~~~~~~~ 469 (765)
T PRK10049 450 TDDVVAR--EPQDPGVQRLARA 469 (765)
T ss_pred HHHHHHh--CCCCHHHHHHHHH
Confidence 9999975 4665554444433
No 20
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.82 E-value=6.4e-15 Score=148.55 Aligned_cols=192 Identities=7% Similarity=-0.002 Sum_probs=146.1
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCC-----CCCCHHhHHHHHH
Q 010830 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG-----AFPDSLTYNMIFE 369 (499)
Q Consensus 295 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-----~~p~~~~~~~ll~ 369 (499)
.+-++...|+..++++.|+.+...+ .+....+-..+.++|...+++++|..+|+.+.... ..++......|.-
T Consensus 298 rl~aL~~r~r~~~vi~~y~~l~~~~--~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~y 375 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEAMEAEG--YKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYY 375 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhcC--CCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHH
Confidence 4567778899999999999999887 44455677888999999999999999999987642 1223344578889
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCC-----------CCCh---hhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHH
Q 010830 370 CLIKNKRVHEVEKFFHEMIKNEW-----------QPTP---LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 435 (499)
Q Consensus 370 ~~~~~g~~~~a~~~~~~~~~~~~-----------~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 435 (499)
++...+++++|..+++.+.+... .|+. ..+..++..+...|++.+|++.++++.... +-|.....
T Consensus 376 A~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~ 454 (822)
T PRK14574 376 SLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRI 454 (822)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 99999999999999999987311 1221 123456777888999999999999998644 45777888
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc--hHHHHHHH
Q 010830 436 ELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS--MRDIFDSL 490 (499)
Q Consensus 436 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~--a~~~~~~~ 490 (499)
.+...+...|.+.+|++.++...... +-+..+......++...|++ |..+.+.+
T Consensus 455 ~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 455 ALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 88899999999999999997776542 23456667777888888888 65555444
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.82 E-value=1.3e-15 Score=153.58 Aligned_cols=376 Identities=10% Similarity=0.002 Sum_probs=268.3
Q ss_pred CCCCCHHHHHHHHH--hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHH
Q 010830 76 GIIPTPDLVHEVLQ--LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASI 153 (499)
Q Consensus 76 ~~~~~~~~~~~~l~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~l 153 (499)
...|++..+..+-. ...|+++.|++.++.+....+.+...|..+..+|...|++++|+.-|......+..+......+
T Consensus 155 ~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~ 234 (615)
T TIGR00990 155 ECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQA 234 (615)
T ss_pred hcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHH
Confidence 34556554443322 3468999999999999888888899999999999999999999998877765543222222222
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC---------------------------CCCcCH-HHHHHHH--HHHHccCCchHHHH
Q 010830 154 FDSYCGAGKYDEAVMSFDVMSMH---------------------------GVEQDV-VAVNSLL--SAICRQENQTSRAL 203 (499)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~m~~~---------------------------g~~p~~-~~~~~ll--~~~~~~~~~~~~a~ 203 (499)
+..+........+...++.-... ...+.. ..+..+. ....+..+++++|.
T Consensus 235 ~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~ 314 (615)
T TIGR00990 235 VERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAA 314 (615)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHH
Confidence 22111111111111111100000 000000 0000000 00011226788999
Q ss_pred HHHHHHhcc---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHH
Q 010830 204 EFLNRVKKI---VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280 (499)
Q Consensus 204 ~~~~~~~~~---~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m 280 (499)
..|+..... .+.....+..+...+...|++++|...|++..+ ..|.+...|..+...+...|++++|+..|++.
T Consensus 315 ~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~---l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~a 391 (615)
T TIGR00990 315 RAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE---LDPRVTQSYIKRASMNLELGDPDKAEEDFDKA 391 (615)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999987652 234566788888999999999999999999965 47877888999999999999999999999998
Q ss_pred hhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC
Q 010830 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPD 360 (499)
Q Consensus 281 ~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 360 (499)
.+.. +.+..++..+...+...|++++|...|++.++.. +.+...+..+...+.+.|++++|+..|++..+. .+-+
T Consensus 392 l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~---P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~ 466 (615)
T TIGR00990 392 LKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD---PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEA 466 (615)
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCC
Confidence 7764 3356788889999999999999999999999864 456788888999999999999999999998874 2235
Q ss_pred HHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChh------hHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHH
Q 010830 361 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL------NCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 434 (499)
Q Consensus 361 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 434 (499)
...|+.+...+...|++++|.+.|+..++.....+.. .++..+..+...|++++|.+++++..+.. ..+...+
T Consensus 467 ~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~ 545 (615)
T TIGR00990 467 PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAV 545 (615)
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHH
Confidence 6788889999999999999999999998753221111 11222223344699999999999988754 2344578
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHc
Q 010830 435 NELLVGLRNLGRLSDVRRFAEEMLNR 460 (499)
Q Consensus 435 ~~ll~~~~~~g~~~~a~~~~~~m~~~ 460 (499)
..+...+.+.|++++|.+.|++..+.
T Consensus 546 ~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 546 ATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 88899999999999999999998765
No 22
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=1.3e-14 Score=128.09 Aligned_cols=416 Identities=12% Similarity=0.160 Sum_probs=277.6
Q ss_pred HHHHHHHhcCCch---hHHHHHHhcCCCCCHHHHHHHHH-hhc-CCchhHHHHHHHhc----------------------
Q 010830 54 RIICEILAHASSD---DIESALACTGIIPTPDLVHEVLQ-LSY-DSPSSAVDFFRWAG---------------------- 106 (499)
Q Consensus 54 ~~~~~~~~~~~~~---~l~~~l~~~~~~~~~~~~~~~l~-~~~-~~~~~a~~~~~~~~---------------------- 106 (499)
..++..+...... -++..|.+.|+..++.+-..+++ .|+ ++.+--..-.+|+.
T Consensus 120 ~nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~ 199 (625)
T KOG4422|consen 120 NNLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLL 199 (625)
T ss_pred hHHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHH
Confidence 3455555554433 38889999999999888888777 332 21111111111111
Q ss_pred -CCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHH
Q 010830 107 -RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVA 184 (499)
Q Consensus 107 -~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 184 (499)
+..+.+..+|..||.++|+--+.+.|.++|.+-.... ..+..+||.+|.+-.-. ...++..+|....+.||..|
T Consensus 200 ~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~T 275 (625)
T KOG4422|consen 200 FETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFT 275 (625)
T ss_pred HhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHh
Confidence 1234566789999999999999999999998887655 57888899888775433 23788889988888999999
Q ss_pred HHHHHHHHHccCCchHHH----HHHHHHHhc-cCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHhHc------cCCCCc
Q 010830 185 VNSLLSAICRQENQTSRA----LEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVEE-ANKTFGEMVER------FEWNPE 252 (499)
Q Consensus 185 ~~~ll~~~~~~~~~~~~a----~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~------~~~~p~ 252 (499)
+|+++.+.++. |+++.| .+++.+|++ |+.|...+|..+|..+++.++..+ +..++.++... ..+.|.
T Consensus 276 fNalL~c~akf-g~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~ 354 (625)
T KOG4422|consen 276 FNALLSCAAKF-GKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPT 354 (625)
T ss_pred HHHHHHHHHHh-cchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCc
Confidence 99999998888 877654 455666776 899999999999998888887644 44444444322 123455
Q ss_pred hHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC----CCCC---HhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCC
Q 010830 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGEN----CFPT---LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN 325 (499)
Q Consensus 253 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 325 (499)
|..-|...+..|.+..+.+-|.++-.-+.... +.|+ ..-|..+....|.....+.....|+.|.-.- +-|+
T Consensus 355 d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~--y~p~ 432 (625)
T KOG4422|consen 355 DNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA--YFPH 432 (625)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce--ecCC
Confidence 55567778888888888888888776554321 2233 2235567777888888888889999988776 6788
Q ss_pred HhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC-C--------HhH-----HHHHH-------
Q 010830 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK-R--------VHE-----VEKFF------- 384 (499)
Q Consensus 326 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~--------~~~-----a~~~~------- 384 (499)
..+...++++..-.+.++-.-+++..++..|-.-+...-.-++..+++.. . +.. |..++
T Consensus 433 ~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~ 512 (625)
T KOG4422|consen 433 SQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQP 512 (625)
T ss_pred chhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 88888888988888888888888888888775545544444444444433 1 100 11111
Q ss_pred HHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCC-CCChHHHHH---HHHHHHHhCCChHHHHHHHHHHHHc
Q 010830 385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG-ILPLEASAN---ELLVGLRNLGRLSDVRRFAEEMLNR 460 (499)
Q Consensus 385 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~---~ll~~~~~~g~~~~a~~~~~~m~~~ 460 (499)
.+|.+..+ .....+.....+.+.|..++|.+++..+.+.+ -.|.....| .+++.-.+.++...|..+++-|...
T Consensus 513 ~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~ 590 (625)
T KOG4422|consen 513 IRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAF 590 (625)
T ss_pred HHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 22333333 33345566666778899999999988885433 223333344 5556667778888888888888776
Q ss_pred CCccCHHHHHHHHHHHHh
Q 010830 461 RILIYEVTMHKLKKAFYN 478 (499)
Q Consensus 461 ~~~p~~~~~~~ll~~~~~ 478 (499)
+...-...-+.+.+.|.-
T Consensus 591 n~~~~E~La~RI~e~f~i 608 (625)
T KOG4422|consen 591 NLPICEGLAQRIMEDFAI 608 (625)
T ss_pred CchhhhHHHHHHHHhcCc
Confidence 654444344555555443
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.77 E-value=1.6e-13 Score=138.50 Aligned_cols=374 Identities=10% Similarity=0.055 Sum_probs=281.2
Q ss_pred hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010830 90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS 169 (499)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 169 (499)
...|+.++|+..++......+.+......+...+...|++++|+++|+++.+..+.+...+..++..+...++.++|++.
T Consensus 79 ~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~ 158 (822)
T PRK14574 79 GWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQ 158 (822)
T ss_pred HHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHH
Confidence 45689999999999876333444555555577888999999999999999999988888888899999999999999999
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------
Q 010830 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFG-------- 241 (499)
Q Consensus 170 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~-------- 241 (499)
++++... .|+...+..++..+... ++..+|++.++++.+..+.+...+..++....+.|-...|.++..
T Consensus 159 l~~l~~~--dp~~~~~l~layL~~~~-~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~ 235 (822)
T PRK14574 159 ATELAER--DPTVQNYMTLSYLNRAT-DRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSA 235 (822)
T ss_pred HHHhccc--CcchHHHHHHHHHHHhc-chHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCH
Confidence 9999876 66666665454444444 566569999999877666677777777777666655544444333
Q ss_pred ----------------------------------------HHhHccCCCCchHHh----HHHHHHHHhcCCCHHHHHHHH
Q 010830 242 ----------------------------------------EMVERFEWNPEHVLA----YETFLITLIRGKQVDEALKFL 277 (499)
Q Consensus 242 ----------------------------------------~~~~~~~~~p~~~~~----~~~li~~~~~~~~~~~a~~~~ 277 (499)
.+....+-.|+.... .--.+-++...|+..++++.|
T Consensus 236 ~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y 315 (822)
T PRK14574 236 EHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEY 315 (822)
T ss_pred HHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 322222223422111 223456778889999999999
Q ss_pred HHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCC---CCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 010830 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF---NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354 (499)
Q Consensus 278 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 354 (499)
+.|...+......+-..+.++|...+++++|+.+++.+..... ...++......|..+|...+++++|..+++.+.+
T Consensus 316 ~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~ 395 (822)
T PRK14574 316 EAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSE 395 (822)
T ss_pred HHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 9999988765667888999999999999999999999976431 0133455568899999999999999999999987
Q ss_pred CCC-----------CCCH---HhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHH
Q 010830 355 HGA-----------FPDS---LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 420 (499)
Q Consensus 355 ~g~-----------~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 420 (499)
... .||. ..+..++..+...|+..+|++.++++.... +-|......+...+...|.+.+|++.++
T Consensus 396 ~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k 474 (822)
T PRK14574 396 QTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELK 474 (822)
T ss_pred cCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 311 1221 124456677889999999999999998764 4578888999999999999999999997
Q ss_pred HHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHH
Q 010830 421 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 470 (499)
Q Consensus 421 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 470 (499)
...... +-+..+......++...|++++|..+.+.+.+. .|+.....
T Consensus 475 ~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~~ 521 (822)
T PRK14574 475 AVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVISR--SPEDIPSQ 521 (822)
T ss_pred HHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCchhHH
Confidence 766542 334566677778888999999999999988865 35544333
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.73 E-value=1.3e-12 Score=134.77 Aligned_cols=147 Identities=6% Similarity=-0.068 Sum_probs=79.0
Q ss_pred hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHH---------------
Q 010830 90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIF--------------- 154 (499)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li--------------- 154 (499)
...|+.++|+..++.+.+..+-|...+..+... +++++|..+|+++.+..+-+..++..+.
T Consensus 89 l~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~e 164 (987)
T PRK09782 89 RHFGHDDRARLLLEDQLKRHPGDARLERSLAAI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLP 164 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHH
Confidence 445677777777776666555555555554222 6666777777777666654444443333
Q ss_pred -------------------------HHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHH
Q 010830 155 -------------------------DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209 (499)
Q Consensus 155 -------------------------~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~ 209 (499)
+.|.+.|++++|++++.++.+.+ ..+......|-.+|....++ +.+..+++.
T Consensus 165 qAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~- 241 (987)
T PRK09782 165 VARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ- 241 (987)
T ss_pred HHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch-
Confidence 34444444455555555544443 12222233333333331122 444444221
Q ss_pred hccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 010830 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245 (499)
Q Consensus 210 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 245 (499)
..+.+...+..++..|.+.|+.++|.++++++..
T Consensus 242 --~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~ 275 (987)
T PRK09782 242 --GIFTDPQSRITYATALAYRGEKARLQHYLIENKP 275 (987)
T ss_pred --hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcc
Confidence 2234566666777777888888888887777643
No 25
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=3.3e-13 Score=119.42 Aligned_cols=367 Identities=14% Similarity=0.165 Sum_probs=266.5
Q ss_pred CCCCHHHHHHHHH-hh-cCCchhHHHHHHHhcC-CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCC-CCCHHHHHH
Q 010830 77 IIPTPDLVHEVLQ-LS-YDSPSSAVDFFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFAS 152 (499)
Q Consensus 77 ~~~~~~~~~~~l~-~~-~~~~~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~ 152 (499)
.+-++.++..+++ .| +...+.|.++++.... ..+.+..+||.+|.+-.-... .+++.+|.... .||..|||+
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHH
Confidence 4456777888887 33 5678899999987755 688899999999987655433 68889998888 599999999
Q ss_pred HHHHHHhcCChhHH----HHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhc---------cCCCCHHH
Q 010830 153 IFDSYCGAGKYDEA----VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK---------IVDPDGDS 219 (499)
Q Consensus 153 li~~~~~~g~~~~A----~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~ 219 (499)
++.+..+.|+++.| .+++.+|++.|+.|...+|..+|..+++..+-...+..++..+.. ..+.|..-
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 99999999987764 678889999999999999999999999984444556666666543 12345667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhHc--cCCCCch---HHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHH
Q 010830 220 FAILLEGWEKEGNVEEANKTFGEMVER--FEWNPEH---VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294 (499)
Q Consensus 220 ~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~p~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 294 (499)
|...+..|.+..+.+-|.++..-+... +...+++ ..-|..+....|+....+....+|+.|.-.-+-|+..+...
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence 888999999999999999988777543 1122222 23466778888999999999999999999888899999999
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCC-Ch---H----------HHHHHHH-------HHH
Q 010830 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND-DV---D----------NVFRFFD-------QMV 353 (499)
Q Consensus 295 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~---~----------~a~~~~~-------~m~ 353 (499)
++++..-.|.++-.-++|..++..| ..-+...-.-++..+++.+ +. + -|..+++ +|.
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~g--ht~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r 516 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYG--HTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQR 516 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999999999999888 4444455555555555554 21 0 1111221 222
Q ss_pred HCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-CCChhhHH---HHHHHHhccCChhHHHHHHHHHHHCCCCC
Q 010830 354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW-QPTPLNCA---TAITMLLDADEPEIAIEIWNYILENGILP 429 (499)
Q Consensus 354 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~---~li~~~~~~g~~~~a~~~~~~m~~~~~~p 429 (499)
+ ........+.+.-.+.+.|+.++|.++|..+.+.+- -|-....+ -+++.-.+..+...|..+++.|...++..
T Consensus 517 ~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~ 594 (625)
T KOG4422|consen 517 A--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPI 594 (625)
T ss_pred h--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchh
Confidence 2 234455667777778999999999999999976532 22223334 55666677788999999999887766543
Q ss_pred hHHHHHHHHHHHHhCCChHHHH
Q 010830 430 LEASANELLVGLRNLGRLSDVR 451 (499)
Q Consensus 430 ~~~~~~~ll~~~~~~g~~~~a~ 451 (499)
-...-+-++..|.-...-.+++
T Consensus 595 ~E~La~RI~e~f~iNqeq~~~l 616 (625)
T KOG4422|consen 595 CEGLAQRIMEDFAINQEQKEAL 616 (625)
T ss_pred hhHHHHHHHHhcCcCHHHHHHH
Confidence 3334444555444433333333
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.72 E-value=2.8e-12 Score=132.40 Aligned_cols=385 Identities=11% Similarity=-0.040 Sum_probs=251.3
Q ss_pred hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhC-CChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 010830 90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKN-GRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVM 168 (499)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 168 (499)
...+++++|++.+..+.+..+.+...+..|...|... ++ +.+..+++...+ .+...+..+...|.+.|+.++|.+
T Consensus 193 ~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk---~d~~l~~ala~~yi~~G~~~~A~~ 268 (987)
T PRK09782 193 IYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIF---TDPQSRITYATALAYRGEKARLQH 268 (987)
T ss_pred HHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcc---cCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3467888888888887776667777777777777773 66 777777553222 467778888888888888888888
Q ss_pred HHHHHHhCCCC-cCHHHHHHH------------------------------HHHHHccCCchHH----------------
Q 010830 169 SFDVMSMHGVE-QDVVAVNSL------------------------------LSAICRQENQTSR---------------- 201 (499)
Q Consensus 169 ~~~~m~~~g~~-p~~~~~~~l------------------------------l~~~~~~~~~~~~---------------- 201 (499)
+++++...-.. |...++.-+ +..+.+. ++++.
T Consensus 269 ~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 347 (987)
T PRK09782 269 YLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKE-GQYDAAQKLLATLPANEMLEE 347 (987)
T ss_pred HHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhc-cHHHHHHHHhcCCCcchHHHH
Confidence 88877543111 222221111 2222222 33333
Q ss_pred -----------------------------------------------HHHHHHHHhcc---CCCCHHHHHHHHHHHHhcC
Q 010830 202 -----------------------------------------------ALEFLNRVKKI---VDPDGDSFAILLEGWEKEG 231 (499)
Q Consensus 202 -----------------------------------------------a~~~~~~~~~~---~~~~~~~~~~ll~~~~~~g 231 (499)
|..+++..-.. ...+.....-++..|.+.+
T Consensus 348 r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 427 (987)
T PRK09782 348 RYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHP 427 (987)
T ss_pred HHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCC
Confidence 33333322110 0112222223444444433
Q ss_pred C---HHHH----------------------HHHHHHHhHccCCCCc--hHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 010830 232 N---VEEA----------------------NKTFGEMVERFEWNPE--HVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284 (499)
Q Consensus 232 ~---~~~a----------------------~~~~~~~~~~~~~~p~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 284 (499)
. ..++ ...++......+..|+ +...|..+..++.. ++.++|+..+.+.....
T Consensus 428 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~ 506 (987)
T PRK09782 428 YLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ 506 (987)
T ss_pred cccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC
Confidence 3 1111 1122222222334455 66677777777776 78888888777766544
Q ss_pred CCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCH-Hh
Q 010830 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS-LT 363 (499)
Q Consensus 285 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~ 363 (499)
|+......+...+...|++++|...|+++... +|+...+..+...+.+.|+.++|...+++..+.. |+. ..
T Consensus 507 --Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~----~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l 578 (987)
T PRK09782 507 --PDAWQHRAVAYQAYQVEDYATALAAWQKISLH----DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNAL 578 (987)
T ss_pred --CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc----CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHH
Confidence 56544444455556889999999999987653 3455556677788888999999999999888753 333 33
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHh
Q 010830 364 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443 (499)
Q Consensus 364 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 443 (499)
+..+.......|++++|...+++.++.. |+...+..+..++.+.|++++|...+++..+.. +.+...++.+..++..
T Consensus 579 ~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~ 655 (987)
T PRK09782 579 YWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWD 655 (987)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3333344456699999999999998754 667788888899999999999999999988754 3355667777788899
Q ss_pred CCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc--hHHHHHHHHH
Q 010830 444 LGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS--MRDIFDSLER 492 (499)
Q Consensus 444 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~--a~~~~~~~~~ 492 (499)
.|++++|+..+++..+.. +-+...+..+-.++...|+. |...+++.++
T Consensus 656 ~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 656 SGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999999999988754 23567788888889999988 7777777664
No 27
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.67 E-value=4e-12 Score=122.82 Aligned_cols=365 Identities=12% Similarity=0.132 Sum_probs=282.1
Q ss_pred hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010830 90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS 169 (499)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 169 (499)
...|+.++|.+++..+.+..+.+...|..|..+|-..|+.+++...+-.....++.|...|..+.....+.|.++.|.-+
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 34699999999999999999999999999999999999999999998888888888889999999999999999999999
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010830 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD-----SFAILLEGWEKEGNVEEANKTFGEMV 244 (499)
Q Consensus 170 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~ll~~~~~~g~~~~a~~~~~~~~ 244 (499)
|.+.++.. +++...+---...|-+. |+...|..-|.++-.-.+|... .--.+++.|...++-+.|.+.++...
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~-G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKT-GDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHh-ChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99998874 44444444556667777 9999999999998774444322 23335667777888899999998887
Q ss_pred HccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCC---------------------------HhhHHHHHH
Q 010830 245 ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT---------------------------LKFFSNALD 297 (499)
Q Consensus 245 ~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---------------------------~~~~~~li~ 297 (499)
.. +..-.+...+++++..+.+...++.|......+......+| ..++ -++-
T Consensus 308 s~-~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~i 385 (895)
T KOG2076|consen 308 SK-EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMI 385 (895)
T ss_pred hh-ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhh
Confidence 74 33333556789999999999999999999888876222222 2221 2233
Q ss_pred HHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCH
Q 010830 298 ILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV 377 (499)
Q Consensus 298 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 377 (499)
++...+..+....+.....+..+...-+...|.-+..+|...|++..|+++|..+.....--+...|-.+..+|...|..
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 44455566666666666666553234467789999999999999999999999999875555678899999999999999
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHH--------HCCCCChHHHHHHHHHHHHhCCChHH
Q 010830 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL--------ENGILPLEASANELLVGLRNLGRLSD 449 (499)
Q Consensus 378 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~--------~~~~~p~~~~~~~ll~~~~~~g~~~~ 449 (499)
++|.+.|+..+... +-+...-..|-..+.+.|+.++|.+.+..+. ..+..|+...--.....+.+.|+.++
T Consensus 466 e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 466 EEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999998853 2234455567777889999999999998854 23455666666666777888898888
Q ss_pred HHHHHHHHHH
Q 010830 450 VRRFAEEMLN 459 (499)
Q Consensus 450 a~~~~~~m~~ 459 (499)
-..+..+|+.
T Consensus 545 fi~t~~~Lv~ 554 (895)
T KOG2076|consen 545 FINTASTLVD 554 (895)
T ss_pred HHHHHHHHHH
Confidence 7666666653
No 28
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.66 E-value=9e-13 Score=125.01 Aligned_cols=283 Identities=16% Similarity=0.119 Sum_probs=203.9
Q ss_pred cCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHH-HccCCchHHHHHHHHHHhccCCCCHH-HH-HHHHHHHHhcCCHHHH
Q 010830 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI-CRQENQTSRALEFLNRVKKIVDPDGD-SF-AILLEGWEKEGNVEEA 236 (499)
Q Consensus 160 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~-~~-~~ll~~~~~~g~~~~a 236 (499)
.|+++.|++.+....+.+ ++...+-.+..-. .+. |+++.|..++.++.+.. |+.. .. ......+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~-g~~~~A~~~l~~A~~~~-~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQR-GDEARANQHLERAAELA-DNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHCCCHHHH
Confidence 588888887777655432 2223332232323 445 88888888888886533 3332 22 2336778888999999
Q ss_pred HHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCH-------hhHHHHHHHHHHcCCHhHHH
Q 010830 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL-------KFFSNALDILVKLNDSTHAV 309 (499)
Q Consensus 237 ~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~~~~~~a~ 309 (499)
.+.++++.+. .|++......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...
T Consensus 173 l~~l~~~~~~---~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~ 249 (398)
T PRK10747 173 RHGVDKLLEV---APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLK 249 (398)
T ss_pred HHHHHHHHhc---CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 9999888554 6878888888899999999999999999988887654322 13333444444455566666
Q ss_pred HHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010830 310 QLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389 (499)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 389 (499)
++++.+-+. .+.+......+...+...|+.++|.+++++..+. .+|.. -.++.+....++.+++.+..+...+
T Consensus 250 ~~w~~lp~~---~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk 322 (398)
T PRK10747 250 RWWKNQSRK---TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQQIK 322 (398)
T ss_pred HHHHhCCHH---HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHHHHh
Confidence 676666443 3557888888899999999999999999888774 34442 1233444556888999999988887
Q ss_pred CCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 010830 390 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459 (499)
Q Consensus 390 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 459 (499)
.. +-|...+..+...|.+.+++++|.+.|+...+ ..|+...|..+...+.+.|+.++|.+++++-..
T Consensus 323 ~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 323 QH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 64 34566678888899999999999999998887 468888888888999999999999999887654
No 29
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.66 E-value=2.4e-12 Score=122.12 Aligned_cols=286 Identities=10% Similarity=0.081 Sum_probs=176.9
Q ss_pred CCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHH--HHHHHHHccCCchHHHH
Q 010830 126 NGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN--SLLSAICRQENQTSRAL 203 (499)
Q Consensus 126 ~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~~~~~~~a~ 203 (499)
.|+++.|.+.+....+........|.....+..+.|+++.|.+.+.++.+. .|+...+. .....+... |+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~-g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLAR-NENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHC-CCHHHHH
Confidence 577777776666554443212223333344446777777777777777654 45543332 223445555 7777777
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHH-----hHHHHHHHHhcCCCHHHHHHHHH
Q 010830 204 EFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL-----AYETFLITLIRGKQVDEALKFLR 278 (499)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-----~~~~li~~~~~~~~~~~a~~~~~ 278 (499)
..++.+.+..+.+......+...|.+.|++++|.+++..+.+.....++... +|..++.......+.+...++++
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 7777777666666777777777777777777777777777665222222111 33444444444555566666665
Q ss_pred HHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC
Q 010830 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAF 358 (499)
Q Consensus 279 ~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 358 (499)
.+-+. .+.+......+...+...|+.++|.+++++..+.. +|... .++.+....++.+++++..+...+.. +
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~----~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P 325 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ----YDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-G 325 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-C
Confidence 54332 23456666677777777777777777777776632 34321 12333345577777777777776642 2
Q ss_pred CCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 010830 359 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 424 (499)
Q Consensus 359 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 424 (499)
-|...+..+...|.+.+++++|.+.|+.+.+. .|+..+|..+...+.+.|+.++|.+++++-..
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 24445666777777777788887777777764 47777777777777777777777777776543
No 30
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.65 E-value=1.5e-15 Score=137.58 Aligned_cols=253 Identities=15% Similarity=0.178 Sum_probs=90.0
Q ss_pred hhcCCchhHHHHHHHh-cCC-CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHH
Q 010830 90 LSYDSPSSAVDFFRWA-GRG-QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAV 167 (499)
Q Consensus 90 ~~~~~~~~a~~~~~~~-~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~ 167 (499)
...|+++.|+++++.. ... .+.|...|..+.......++++.|++.++++...+..+...+..++.. ...+++++|.
T Consensus 19 ~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~ 97 (280)
T PF13429_consen 19 YQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEAL 97 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence 3457777777777433 333 344555555555666667777777777777777765556666666666 6777777777
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 010830 168 MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK--IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245 (499)
Q Consensus 168 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 245 (499)
++++...+. .++...+..++..+... ++++++..+++.+.. ..+.+...|..+...+.+.|+.++|.+.+++..+
T Consensus 98 ~~~~~~~~~--~~~~~~l~~~l~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~ 174 (280)
T PF13429_consen 98 KLAEKAYER--DGDPRYLLSALQLYYRL-GDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE 174 (280)
T ss_dssp ----------------------H-HHHT-T-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred ccccccccc--ccccchhhHHHHHHHHH-hHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777665443 34555566666666666 777777777777654 2345666777777777777777777777777755
Q ss_pred ccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCC
Q 010830 246 RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN 325 (499)
Q Consensus 246 ~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 325 (499)
. .|+|....+.++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|..++++..+.. +.|
T Consensus 175 ~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~---p~d 247 (280)
T PF13429_consen 175 L---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN---PDD 247 (280)
T ss_dssp H----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS---TT-
T ss_pred c---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc---ccc
Confidence 4 67667677777777777777777777776665543 3344455666777777777777777777777653 446
Q ss_pred HhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 010830 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMV 353 (499)
Q Consensus 326 ~~~~~~li~~~~~~~~~~~a~~~~~~m~ 353 (499)
......+..++...|+.++|.++..+..
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 6666777777777777777777766554
No 31
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.65 E-value=4.7e-12 Score=123.19 Aligned_cols=391 Identities=13% Similarity=0.178 Sum_probs=236.4
Q ss_pred chhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChhHHHHHHH
Q 010830 95 PSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV---LSLPTFASIFDSYCGAGKYDEAVMSFD 171 (499)
Q Consensus 95 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 171 (499)
...++..+..+-.....|+.+.+.|...|.-.|++..++.+...+..... .-...|-.+.++|-..|++++|...|.
T Consensus 252 ~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~ 331 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYM 331 (1018)
T ss_pred HHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 34555555555446778888999999999999999999999988887763 234568889999999999999999998
Q ss_pred HHHhCCCCcCHH--HHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHhH
Q 010830 172 VMSMHGVEQDVV--AVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG----NVEEANKTFGEMVE 245 (499)
Q Consensus 172 ~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~~ 245 (499)
...+. .+|.+ .+--+...+.+. |+++.+...|+.+-+..+.+..+..++...|...+ ..+.|..++.+..+
T Consensus 332 ~s~k~--~~d~~~l~~~GlgQm~i~~-~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~ 408 (1018)
T KOG2002|consen 332 ESLKA--DNDNFVLPLVGLGQMYIKR-GDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE 408 (1018)
T ss_pred HHHcc--CCCCccccccchhHHHHHh-chHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh
Confidence 77655 45443 344567788888 99999999999998888888888888888888775 55667777777655
Q ss_pred ccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHH----HhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCC-
Q 010830 246 RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV----MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF- 320 (499)
Q Consensus 246 ~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~----m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~- 320 (499)
. .|.|...|-.+...+....-+.. +.+|.. +...+-.+.....|.+.......|+++.|...|+.....-.
T Consensus 409 ~---~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~ 484 (1018)
T KOG2002|consen 409 Q---TPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLE 484 (1018)
T ss_pred c---ccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhh
Confidence 4 56677788777777776655544 666544 33455556677778887777888888888888877665410
Q ss_pred CCCCCH------hHHHHHHHHHHcCCChHHHHHHHHHHHHCC---------------------------------CCCCH
Q 010830 321 NLMPNL------IMYNAVIGLLCNNDDVDNVFRFFDQMVFHG---------------------------------AFPDS 361 (499)
Q Consensus 321 ~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---------------------------------~~p~~ 361 (499)
...+|. .+--.+...+-..++++.|.+.|..+.+.. ..-+.
T Consensus 485 ~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np 564 (1018)
T KOG2002|consen 485 VANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNP 564 (1018)
T ss_pred hcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCc
Confidence 011222 111112222233334444444444433310 11122
Q ss_pred HhHHHHHHHHHhcCCHhHHHHHHHHHHHC-CCCCChhhHHHHHHHHhc------------cCChhHHHHHHHHHHHCCCC
Q 010830 362 LTYNMIFECLIKNKRVHEVEKFFHEMIKN-EWQPTPLNCATAITMLLD------------ADEPEIAIEIWNYILENGIL 428 (499)
Q Consensus 362 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~li~~~~~------------~g~~~~a~~~~~~m~~~~~~ 428 (499)
..+..+...+.+...+..|.+-|+...+. ...+|.+....|.+.|.+ .+..++|.++|.+.++.. +
T Consensus 565 ~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-p 643 (1018)
T KOG2002|consen 565 NARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-P 643 (1018)
T ss_pred HHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-c
Confidence 22222222333333333333333333322 111333333333333321 123455666666555533 2
Q ss_pred ChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc--hHHHHHHHHHHH
Q 010830 429 PLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS--MRDIFDSLERRC 494 (499)
Q Consensus 429 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~--a~~~~~~~~~~~ 494 (499)
-|...-|.+.-.++..|++.+|..+|.+..+... -+..+|-.+.+.|..+|++ |+++|+..+++-
T Consensus 644 kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf 710 (1018)
T KOG2002|consen 644 KNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKF 710 (1018)
T ss_pred chhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555556666666666666666665432 1334555666666666666 666666665543
No 32
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.64 E-value=1.6e-12 Score=124.10 Aligned_cols=293 Identities=13% Similarity=0.035 Sum_probs=202.2
Q ss_pred HhcCChhHHHHHHHHHHhCCCCcCHHHHH-HHHHHHHccCCchHHHHHHHHHHhccCCCC-HHHHHHHHHHHHhcCCHHH
Q 010830 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVN-SLLSAICRQENQTSRALEFLNRVKKIVDPD-GDSFAILLEGWEKEGNVEE 235 (499)
Q Consensus 158 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~ 235 (499)
...|+++.|.+.+....+. .|+...+- ......... |+.+.|..++++..+..+.+ ..........+...|+++.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~-g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQR-GDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHH
Confidence 3568888888888877655 45443333 334455556 88999999888876533222 2344445778888999999
Q ss_pred HHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHH---HHcCCHhHHHHHH
Q 010830 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL---VKLNDSTHAVQLW 312 (499)
Q Consensus 236 a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~---~~~~~~~~a~~~~ 312 (499)
|.+.++.+.+. .|++...+..+...+.+.|++++|.+.+..+.+.++.+.......-..++ ...+..+.+.+.+
T Consensus 172 Al~~l~~l~~~---~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 172 ARHGVDKLLEM---APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999765 68788888899999999999999999999998887543322211111222 2222333333344
Q ss_pred HHHHhcCC-CCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHh---HHHHHHHHHhcCCHhHHHHHHHHHH
Q 010830 313 DIMVGIGF-NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLT---YNMIFECLIKNKRVHEVEKFFHEMI 388 (499)
Q Consensus 313 ~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---~~~ll~~~~~~g~~~~a~~~~~~~~ 388 (499)
..+.+... ..+.+...+..+...+...|+.++|.+++++..+. .||... ...........++.+.+.+.++...
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~l 326 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQA 326 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHH
Confidence 44443320 01237888889999999999999999999998885 344432 1122222334577888888888887
Q ss_pred HCCCCCCh--hhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 010830 389 KNEWQPTP--LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459 (499)
Q Consensus 389 ~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 459 (499)
+.. +-|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 327 k~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 327 KNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 753 2233 456688888999999999999999655444678888888999999999999999999987643
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.64 E-value=2.3e-11 Score=117.73 Aligned_cols=357 Identities=12% Similarity=0.062 Sum_probs=269.2
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCc
Q 010830 119 MVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198 (499)
Q Consensus 119 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 198 (499)
....+...|++++|.+++.+..+..+.....|.+|...|-..|+.+++...+-..-... +-|...|..+-....+. |.
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~-~~ 222 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQL-GN 222 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhc-cc
Confidence 33444455999999999999999999999999999999999999999998876554332 44667777777777777 99
Q ss_pred hHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCC-chHHhH----HHHHHHHhcCCCHHHH
Q 010830 199 TSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP-EHVLAY----ETFLITLIRGKQVDEA 273 (499)
Q Consensus 199 ~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~----~~li~~~~~~~~~~~a 273 (499)
+++|.-+|.+..+-.+++...+---...|-+.|+...|.+-|.++... .| .|..-+ -..+..+...++.+.|
T Consensus 223 i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~---~p~~d~er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 223 INQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQL---DPPVDIERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhh---CCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999998877888888888899999999999999999999664 33 333222 2345667777888999
Q ss_pred HHHHHHHhh-CCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcC-------------------------CCCCCCHh
Q 010830 274 LKFLRVMKG-ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG-------------------------FNLMPNLI 327 (499)
Q Consensus 274 ~~~~~~m~~-~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-------------------------~~~~~~~~ 327 (499)
.+.++.... .+-..+...++.++..+.+...++.|......+.... .++.++..
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR 379 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence 999988765 2334556778888999999999999988887776621 11222333
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHCC--CCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 010830 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHG--AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405 (499)
Q Consensus 328 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 405 (499)
++ -++-++.+.+..+....+...+.+.. +.-+...|.-+..+|...|++.+|..+|..+......-+...|-.+..+
T Consensus 380 v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 380 VI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred hH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 31 22233444455555555555666555 3335567888999999999999999999999887545567789999999
Q ss_pred HhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHH--------HcCCccCHHHHHHHHHHHH
Q 010830 406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML--------NRRILIYEVTMHKLKKAFY 477 (499)
Q Consensus 406 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~--------~~~~~p~~~~~~~ll~~~~ 477 (499)
|...|.+++|.+.|+...... +-+...--.|-..+.+.|+.++|.+.+..+. ..+..|+....-.....+.
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~ 537 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILF 537 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHH
Confidence 999999999999999998733 2233334456677889999999999999965 2345566666666677777
Q ss_pred hcccc
Q 010830 478 NESRS 482 (499)
Q Consensus 478 ~~g~~ 482 (499)
+.|+.
T Consensus 538 ~~gk~ 542 (895)
T KOG2076|consen 538 QVGKR 542 (895)
T ss_pred HhhhH
Confidence 78876
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.63 E-value=1.6e-12 Score=116.00 Aligned_cols=214 Identities=11% Similarity=0.057 Sum_probs=151.5
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHH
Q 010830 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFR 347 (499)
Q Consensus 268 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 347 (499)
|++++|.+.|++.....-.-....|+. --.+-..|++++|.+.|-.+..- +.-++.+.-.+...|-...+...|++
T Consensus 504 gd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i---l~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI---LLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 566677666666655443222233332 22345667777777777665443 23356666667777777777888888
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCC
Q 010830 348 FFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 427 (499)
Q Consensus 348 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 427 (499)
++-+.... ++-|......|...|-+.|+-..|.+.+-+--+ -++.+..+...|...|....-+++++.+|++..- +
T Consensus 580 ~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaal--i 655 (840)
T KOG2003|consen 580 LLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--I 655 (840)
T ss_pred HHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--c
Confidence 77666553 445667778888888888888888876654433 3566788888888888888889999999987654 7
Q ss_pred CChHHHHHHHHHH-HHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc-hHHHHHHH
Q 010830 428 LPLEASANELLVG-LRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS-MRDIFDSL 490 (499)
Q Consensus 428 ~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~-a~~~~~~~ 490 (499)
.|+..-|..++.. +.+.|++++|++++++.-.+ ++-|...+..|++.+...|-. +.+..+.+
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~d~key~~kl 719 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLKDAKEYADKL 719 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccchhHHHHHHHH
Confidence 8999999988855 56779999999999988654 566888889999998888866 55444433
No 35
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=8.3e-11 Score=105.79 Aligned_cols=392 Identities=15% Similarity=0.069 Sum_probs=282.7
Q ss_pred cCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 010830 92 YDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171 (499)
Q Consensus 92 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 171 (499)
.++...|..+|+.+......+...|-..+..-.+++++..|..++++....-+--...|--.+..=-..|++..|.++|+
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqife 165 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFE 165 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 45677899999999888888999999999999999999999999998876643233456666666667899999999999
Q ss_pred HHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCC
Q 010830 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251 (499)
Q Consensus 172 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 251 (499)
.-.+- .|+...|++.|..=.+. +.++.|..+++...- +.|++.+|.-....=.+.|++..+..+|+...+.+|-.-
T Consensus 166 rW~~w--~P~eqaW~sfI~fElRy-keieraR~IYerfV~-~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~ 241 (677)
T KOG1915|consen 166 RWMEW--EPDEQAWLSFIKFELRY-KEIERARSIYERFVL-VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDE 241 (677)
T ss_pred HHHcC--CCcHHHHHHHHHHHHHh-hHHHHHHHHHHHHhe-ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHH
Confidence 88765 89999999999998888 999999999998754 238888888888888889999999999988877655433
Q ss_pred chHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC-------------------------------------------CCCC
Q 010830 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGEN-------------------------------------------CFPT 288 (499)
Q Consensus 252 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-------------------------------------------~~p~ 288 (499)
.+...+.++...-.+.+.++.|.-+|+-..+.- -+-|
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~n 321 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYN 321 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCC
Confidence 233344444444444455555555554332211 1123
Q ss_pred HhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCH-------hHHHHHHHH---HHcCCChHHHHHHHHHHHHCCCC
Q 010830 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNL-------IMYNAVIGL---LCNNDDVDNVFRFFDQMVFHGAF 358 (499)
Q Consensus 289 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~~~li~~---~~~~~~~~~a~~~~~~m~~~g~~ 358 (499)
-.+|-..++.-...|+.+...++|+..+.. ++|-. ..|--+=.+ -....+.+.+.++|+...+. ++
T Consensus 322 YDsWfdylrL~e~~g~~~~Ire~yErAIan---vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IP 397 (677)
T KOG1915|consen 322 YDSWFDYLRLEESVGDKDRIRETYERAIAN---VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IP 397 (677)
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHcc---CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cC
Confidence 344445556666678888888888888765 45521 112111111 13456778888888877772 22
Q ss_pred CCHHhHHHHH----HHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHH
Q 010830 359 PDSLTYNMIF----ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 434 (499)
Q Consensus 359 p~~~~~~~ll----~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 434 (499)
-...||..+= .--.++.++..|.+++...+ |..|-..+|...|..-.+.++++.+..++++.++.+ +-|..+|
T Consensus 398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W 474 (677)
T KOG1915|consen 398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAW 474 (677)
T ss_pred cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHH
Confidence 2334444332 23346678888888888776 566888889999988889999999999999999866 3466788
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcC-CccCHHHHHHHHHHHHhcccc--hHHHHHHHHHHH
Q 010830 435 NELLVGLRNLGRLSDVRRFAEEMLNRR-ILIYEVTMHKLKKAFYNESRS--MRDIFDSLERRC 494 (499)
Q Consensus 435 ~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~--a~~~~~~~~~~~ 494 (499)
......-...|+.+.|..+|+-.++.. +......|...|.-=...|.. |+.+++.++++-
T Consensus 475 ~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 475 SKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 887777778899999999999888653 334456677777777777877 999999988763
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.62 E-value=5e-15 Score=134.23 Aligned_cols=259 Identities=16% Similarity=0.156 Sum_probs=68.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCH
Q 010830 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233 (499)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 233 (499)
...+.+.|++++|+++++......-.|+...|-.++..++...++.+.|...++++....+-+...+..++.. ...+++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 4444445555555555533222211233333333333222222445555555554443222233344444444 355555
Q ss_pred HHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC-CCCCHhhHHHHHHHHHHcCCHhHHHHHH
Q 010830 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN-CFPTLKFFSNALDILVKLNDSTHAVQLW 312 (499)
Q Consensus 234 ~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~ 312 (499)
++|.++++...++ .+ +...+..++..+.+.++++++.++++.+.... ...+...|..+...+.+.|+.++|+..+
T Consensus 94 ~~A~~~~~~~~~~---~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 94 EEALKLAEKAYER---DG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccc---cc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5555555444332 11 23344455555555555555555555544321 2234444555555555555555555555
Q ss_pred HHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 010830 313 DIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 392 (499)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 392 (499)
++..+.. +.|....+.++..+...|+.+++.++++...+.. ..|...+..+..+|...|+.++|..+|++..+..
T Consensus 170 ~~al~~~---P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 170 RKALELD---PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred HHHHHcC---CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence 5555542 2234555555555555555555555555554431 2233444555555555555555555555555432
Q ss_pred CCChhhHHHHHHHHhccCChhHHHHHHHHH
Q 010830 393 QPTPLNCATAITMLLDADEPEIAIEIWNYI 422 (499)
Q Consensus 393 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 422 (499)
+.|..+...+..++...|+.++|.++.++.
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp TT-HHHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 224445555555555555555555555443
No 37
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.61 E-value=7.7e-12 Score=119.34 Aligned_cols=289 Identities=10% Similarity=0.024 Sum_probs=162.6
Q ss_pred HhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHH--HHHHHHHHHHccCCchHH
Q 010830 124 GKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV--AVNSLLSAICRQENQTSR 201 (499)
Q Consensus 124 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~~ 201 (499)
...|+++.|.+.+....+........+-....++.+.|+++.|.+.+.+..+. .|+.. ..-.....+... |+++.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~-~~~~~ 171 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQ-NELHA 171 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHC-CCHHH
Confidence 34466777766666655554333344445555666667777777777666543 23332 222234455555 66777
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHH---HHHHHHhcCCCHHHHHHHHH
Q 010830 202 ALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYE---TFLITLIRGKQVDEALKFLR 278 (499)
Q Consensus 202 a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~---~li~~~~~~~~~~~a~~~~~ 278 (499)
|...++.+.+..+.+..++..+...|.+.|++++|.+.+..+.+. +..++.. ... .........+..+++.+.+.
T Consensus 172 Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~-~~~~~~~-~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 172 ARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA-GLFDDEE-FADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc-CCCCHHH-HHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 777777666655556666667777777777777777777777654 3222111 101 11111122222333333333
Q ss_pred HHhhCC---CCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhH---HHHHHHHHHcCCChHHHHHHHHHH
Q 010830 279 VMKGEN---CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM---YNAVIGLLCNNDDVDNVFRFFDQM 352 (499)
Q Consensus 279 ~m~~~~---~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m 352 (499)
.+.+.. .+.+...+..+...+...|+.++|.+++++..+.. ||... ...........++.+.+.+.++..
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~----pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~ 325 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL----GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQ 325 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC----CCcccchhHHHHHhhhcCCCChHHHHHHHHHH
Confidence 333222 11255666666777777777777777777777653 23221 111122223346667777777666
Q ss_pred HHCCCCCCH---HhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHH
Q 010830 353 VFHGAFPDS---LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 423 (499)
Q Consensus 353 ~~~g~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 423 (499)
.+. .|+. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++..
T Consensus 326 lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 326 AKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 653 2333 34556667777777888888777753333345777777777777777788887877777654
No 38
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.60 E-value=8.2e-12 Score=106.82 Aligned_cols=293 Identities=11% Similarity=0.107 Sum_probs=201.7
Q ss_pred CCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHH
Q 010830 126 NGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205 (499)
Q Consensus 126 ~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~ 205 (499)
+.+.++|.++|-+|.+.+..+..+--+|.+.|.+.|..|.|+++.+.+.+ .||... +- +.
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~---spdlT~-~q-------------r~--- 107 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE---SPDLTF-EQ-------------RL--- 107 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc---CCCCch-HH-------------HH---
Confidence 45777778888777777666666677777777777777777777777765 233211 11 01
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCC
Q 010830 206 LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285 (499)
Q Consensus 206 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 285 (499)
...-.|..-|...|-+|.|+++|..+.+...+.+ .....|+..|-+..+|++|++.-+++.+.+-
T Consensus 108 ------------lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~---~AlqqLl~IYQ~treW~KAId~A~~L~k~~~ 172 (389)
T COG2956 108 ------------LALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAE---GALQQLLNIYQATREWEKAIDVAERLVKLGG 172 (389)
T ss_pred ------------HHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhH---HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC
Confidence 1122344557777888888888888876422222 3567788888888888888888888777664
Q ss_pred CCC----HhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCH
Q 010830 286 FPT----LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS 361 (499)
Q Consensus 286 ~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 361 (499)
.+. ...|..+...+....+.+.|..++.+..+.+ +..+..--.+.+.+...|++++|.+.++...+.+..--.
T Consensus 173 q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~---~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~ 249 (389)
T COG2956 173 QTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD---KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLS 249 (389)
T ss_pred ccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC---ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHH
Confidence 433 2345556666666788889999999888865 344555556667888999999999999999886554445
Q ss_pred HhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHH
Q 010830 362 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 441 (499)
Q Consensus 362 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 441 (499)
.+...|..+|.+.|+.++....+..+.+....++ .-..+...-......+.|...+.+-.. -.|+...+..+|..-
T Consensus 250 evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~ 325 (389)
T COG2956 250 EVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD--AELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYH 325 (389)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc--HHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhh
Confidence 6778888999999999999999999888643333 333444444444556666666555444 268888888888774
Q ss_pred Hh---CCChHHHHHHHHHHHHc
Q 010830 442 RN---LGRLSDVRRFAEEMLNR 460 (499)
Q Consensus 442 ~~---~g~~~~a~~~~~~m~~~ 460 (499)
.. .|...+-..+++.|+..
T Consensus 326 l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 326 LADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred hccccccchhhhHHHHHHHHHH
Confidence 43 35577777788888754
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=6.3e-12 Score=117.76 Aligned_cols=282 Identities=9% Similarity=0.058 Sum_probs=117.9
Q ss_pred CchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHhcCChhHHHHHH
Q 010830 94 SPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG---VLSLPTFASIFDSYCGAGKYDEAVMSF 170 (499)
Q Consensus 94 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 170 (499)
+.++|...|........-+......+.++|...+++++|.++|+.+++.. +.+.++|.+.+-.+-+.-...- +-
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~---La 410 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSY---LA 410 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHH---HH
Confidence 34455555554322222233344444455555555555555555555544 2344444444433222111100 00
Q ss_pred HHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCC
Q 010830 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250 (499)
Q Consensus 171 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 250 (499)
+.+.+.. +-.+.+|-++-.+|.-+ ++.+.|++.|++...-.+....+|+.+..-+.....+|.|..-|+.. .++.
T Consensus 411 q~Li~~~-~~sPesWca~GNcfSLQ-kdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~A---l~~~ 485 (638)
T KOG1126|consen 411 QDLIDTD-PNSPESWCALGNCFSLQ-KDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKA---LGVD 485 (638)
T ss_pred HHHHhhC-CCCcHHHHHhcchhhhh-hHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhh---hcCC
Confidence 1111110 22334444444444444 44444544444444333334444444444444444444444444444 2334
Q ss_pred CchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHH
Q 010830 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYN 330 (499)
Q Consensus 251 p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 330 (499)
|.+-.+|.-+.-.|.+.++++.|+-.|++..+.+ +-+......+...+.+.|+.++|++++++....+ +.|...--
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld---~kn~l~~~ 561 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD---PKNPLCKY 561 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC---CCCchhHH
Confidence 4333444444444444444444444444444332 1123333333444444444444444444444432 22333333
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010830 331 AVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS-LTYNMIFECLIKNKRVHEVEKFFHEMIK 389 (499)
Q Consensus 331 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 389 (499)
..+..+...+++++|+..++++++ +.|+. ..|..+...|.+.|+.+.|+.-|.-+.+
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 333334444444444444444444 22222 3333344444444444444444444433
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1e-10 Score=104.97 Aligned_cols=355 Identities=12% Similarity=0.081 Sum_probs=233.9
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHH-----------------------------HHHHHH
Q 010830 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFAS-----------------------------IFDSYC 158 (499)
Q Consensus 108 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-----------------------------li~~~~ 158 (499)
+...|...+-.....+.+.|....|++.|......-+-.-..|.. +..++-
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~ 238 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQ 238 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHH
Confidence 344455555555556666777777777776665543222122211 223444
Q ss_pred hcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCC---CCHHHHHHHHHHHHhcCCHHH
Q 010830 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD---PDGDSFAILLEGWEKEGNVEE 235 (499)
Q Consensus 159 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~ 235 (499)
.....+++.+-.+.+...|+.-+...-+....+.... .+++.|+.+|+.+.+..+ .|..+|..++-.--.+..+.-
T Consensus 239 el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~-rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~ 317 (559)
T KOG1155|consen 239 ELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQ-RDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSY 317 (559)
T ss_pred HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhh-hhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHH
Confidence 5556777777777777777544443333333333344 888889999988877543 256677766544332222221
Q ss_pred HHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHH
Q 010830 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315 (499)
Q Consensus 236 a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 315 (499)
--+....+ ....| .|..++.+-|.-.++.++|...|++..+.+ +-....|+.+.+-|....+...|.+-++..
T Consensus 318 LA~~v~~i---dKyR~---ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 318 LAQNVSNI---DKYRP---ETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HHHHHHHh---ccCCc---cceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 11111122 24445 377788888888889999999999888765 224567778888899999999999999998
Q ss_pred HhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC
Q 010830 316 VGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 395 (499)
Q Consensus 316 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~ 395 (499)
++-+ +.|-..|-.|.++|.-.+...-|+-.|++..... +-|...|.+|..+|.+.++.++|++.|......|- .+
T Consensus 391 vdi~---p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te 465 (559)
T KOG1155|consen 391 VDIN---PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TE 465 (559)
T ss_pred HhcC---chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cc
Confidence 8864 6688899999999999999889999998888742 23678899999999999999999999999888763 35
Q ss_pred hhhHHHHHHHHhccCChhHHHHHHHHHHH----CCCCChHHHHHH--HHHHHHhCCChHHHHHHHHHHHHcCCccCHHHH
Q 010830 396 PLNCATAITMLLDADEPEIAIEIWNYILE----NGILPLEASANE--LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTM 469 (499)
Q Consensus 396 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p~~~~~~~--ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 469 (499)
...+..|.+.|-+.++.++|.+.|+..++ .|..-+...... |..-+.+.+++++|.........- .+...--
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~eea 543 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECEEA 543 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHHHH
Confidence 67788888999899999999888877664 333322222222 334567788888887766555433 3344444
Q ss_pred HHHHHHHH
Q 010830 470 HKLKKAFY 477 (499)
Q Consensus 470 ~~ll~~~~ 477 (499)
..|++.+.
T Consensus 544 k~LlReir 551 (559)
T KOG1155|consen 544 KALLREIR 551 (559)
T ss_pred HHHHHHHH
Confidence 44444443
No 41
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.58 E-value=2.6e-11 Score=118.12 Aligned_cols=376 Identities=11% Similarity=0.023 Sum_probs=232.1
Q ss_pred hcCCchhHHHHHHHhcCCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC----ChhH
Q 010830 91 SYDSPSSAVDFFRWAGRGQRLS-PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAG----KYDE 165 (499)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g----~~~~ 165 (499)
..|+.+.|...|.......+.+ +..+--+...+.+.|+++.+...|+...+..+.+..+...|...|+..+ ..+.
T Consensus 319 a~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~ 398 (1018)
T KOG2002|consen 319 AQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDK 398 (1018)
T ss_pred hhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHH
Confidence 3589999999998776644444 5666678888999999999999999998888777788888888777775 5566
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHh-----ccCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010830 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-----KIVDPDGDSFAILLEGWEKEGNVEEANKTF 240 (499)
Q Consensus 166 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 240 (499)
|..++.+..+.- ..|...|-.+-..+-. ++...++.+|.... .+..+.....|.+...+...|+++.|...|
T Consensus 399 a~~~l~K~~~~~-~~d~~a~l~laql~e~--~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f 475 (1018)
T KOG2002|consen 399 ASNVLGKVLEQT-PVDSEAWLELAQLLEQ--TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHF 475 (1018)
T ss_pred HHHHHHHHHhcc-cccHHHHHHHHHHHHh--cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHH
Confidence 666666655432 3455556555555543 34444465555532 133456666777777777777777777777
Q ss_pred HHHhHcc--CCCCc-----hHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC-----------------------------
Q 010830 241 GEMVERF--EWNPE-----HVLAYETFLITLIRGKQVDEALKFLRVMKGEN----------------------------- 284 (499)
Q Consensus 241 ~~~~~~~--~~~p~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----------------------------- 284 (499)
....... ..+++ ++.+-..+...+-..++.+.|.++|..+.+..
T Consensus 476 ~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~ 555 (1018)
T KOG2002|consen 476 KSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKD 555 (1018)
T ss_pred HHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHH
Confidence 6664430 01121 11122223444444455555555555544432
Q ss_pred ----CCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHc------------CCChHHHHHH
Q 010830 285 ----CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN------------NDDVDNVFRF 348 (499)
Q Consensus 285 ----~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~------------~~~~~~a~~~ 348 (499)
..-+...++.+-..+.+...+..|.+-|..+.+.-. ..+|..+.-+|...|.. .+..++|+++
T Consensus 556 ~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~-~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~ 634 (1018)
T KOG2002|consen 556 ALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTS-TKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQL 634 (1018)
T ss_pred HHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhc-cCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHH
Confidence 011222223333344555555555554544444321 12455554444444331 2345678888
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHH-CCC
Q 010830 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE-NGI 427 (499)
Q Consensus 349 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~ 427 (499)
|.+..+.. +-|...-|.+.-.++..|++.+|..+|....+... -...+|..+.++|..+|++-.|+++|+...+ ..-
T Consensus 635 y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~ 712 (1018)
T KOG2002|consen 635 YGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYK 712 (1018)
T ss_pred HHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88777652 23566667777778888888888888888877643 2445777888888888888888888887654 444
Q ss_pred CChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHH
Q 010830 428 LPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472 (499)
Q Consensus 428 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 472 (499)
.-+..+.+.|.+++.+.|++.+|.+.+.........-....||..
T Consensus 713 ~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a 757 (1018)
T KOG2002|consen 713 KNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLA 757 (1018)
T ss_pred cCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHH
Confidence 556677788888888888888888887777655433333444443
No 42
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.58 E-value=3.5e-11 Score=103.03 Aligned_cols=301 Identities=14% Similarity=0.139 Sum_probs=220.0
Q ss_pred CCHHHHHHHHHhhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC----HHHHHHHH
Q 010830 79 PTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS----LPTFASIF 154 (499)
Q Consensus 79 ~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~----~~~~~~li 154 (499)
.+..-+..+=-+..+.++.|.++|-.+.+..+-+..+--+|.+.|.+.|.+|.|+++.+.+.++.-.+ ......|.
T Consensus 35 lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~ 114 (389)
T COG2956 35 LSRDYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLG 114 (389)
T ss_pred ccHHHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 34444444433667899999999999988888888888999999999999999999999888775222 23566778
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhc-cCCCC----HHHHHHHHHHHHh
Q 010830 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPD----GDSFAILLEGWEK 229 (499)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~-~~~~~----~~~~~~ll~~~~~ 229 (499)
+-|...|-+|.|+++|..+.+.| ..-......|+..|-.. .+|++|.++-+++.+ +..+. ...|..+...+..
T Consensus 115 ~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~t-reW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~ 192 (389)
T COG2956 115 RDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQAT-REWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA 192 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh
Confidence 88999999999999999998755 44566777888888888 999999999887765 22222 2346667777777
Q ss_pred cCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHH
Q 010830 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV 309 (499)
Q Consensus 230 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 309 (499)
..+.+.|..++.+..+. .|..+..--.+.+.+...|+++.|.+.++...+.+..--..+...|..+|...|+.++..
T Consensus 193 ~~~~d~A~~~l~kAlqa---~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~ 269 (389)
T COG2956 193 SSDVDRARELLKKALQA---DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGL 269 (389)
T ss_pred hhhHHHHHHHHHHHHhh---CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 88888999888888554 665665666677888888999999999998888775545567778888889999999988
Q ss_pred HHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh---cCCHhHHHHHHHH
Q 010830 310 QLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK---NKRVHEVEKFFHE 386 (499)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~ 386 (499)
..+..+.+.. +....-..+-..-....-.+.|...+.+-.. -+|+...+..+|..-.. .|...+-..+++.
T Consensus 270 ~fL~~~~~~~----~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~ 343 (389)
T COG2956 270 NFLRRAMETN----TGADAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRD 343 (389)
T ss_pred HHHHHHHHcc----CCccHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhhccccccchhhhHHHHHH
Confidence 8888887754 3444444444444444445555555544443 25888888888876543 3445666667777
Q ss_pred HHHC
Q 010830 387 MIKN 390 (499)
Q Consensus 387 ~~~~ 390 (499)
|...
T Consensus 344 mvge 347 (389)
T COG2956 344 MVGE 347 (389)
T ss_pred HHHH
Confidence 7654
No 43
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.57 E-value=4e-11 Score=105.87 Aligned_cols=286 Identities=17% Similarity=0.109 Sum_probs=204.9
Q ss_pred cCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010830 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVEEANK 238 (499)
Q Consensus 160 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~ 238 (499)
.|+|..|+++..+-.+.+ +-....|..-..+.-.. |+.+.+-.++.+..+ ...++...+-+........|+++.|..
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qr-gd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQR-GDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhc-ccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 578888888887766665 22233444444555555 888888888887766 245566677777777888888888888
Q ss_pred HHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCH-------hhHHHHHHHHHHcCCHhHHHHH
Q 010830 239 TFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL-------KFFSNALDILVKLNDSTHAVQL 311 (499)
Q Consensus 239 ~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~~~~~~a~~~ 311 (499)
-++++.+. .|.++........+|.+.|++.....++..|.+.|.--+. .+|..+++-....+..+.-.+.
T Consensus 175 ~v~~ll~~---~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~ 251 (400)
T COG3071 175 NVDQLLEM---TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTW 251 (400)
T ss_pred HHHHHHHh---CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 88887543 6666777888888888888888888888888888766553 3566666666666666666666
Q ss_pred HHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010830 312 WDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391 (499)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 391 (499)
|+..-.. .+-+...-.+++.-+.++|+.++|.++.++..+.+..|+ -...-.+.+-++...-++..+.-.+..
T Consensus 252 W~~~pr~---lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h 324 (400)
T COG3071 252 WKNQPRK---LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH 324 (400)
T ss_pred HHhccHH---hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC
Confidence 6665544 345667777788888888888888888888887766665 122234556677776666666665542
Q ss_pred CCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 010830 392 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460 (499)
Q Consensus 392 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 460 (499)
+-++..+.+|...|.+.+.+.+|.+.|+...+ ..|+..+|+.+..++.+.|+..+|.++.++....
T Consensus 325 -~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 325 -PEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred -CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 23446778888888888888888888886665 5678888888888888888888888888876643
No 44
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.57 E-value=1.4e-09 Score=101.87 Aligned_cols=377 Identities=10% Similarity=0.019 Sum_probs=272.5
Q ss_pred CCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH----HhCCC-C----------------CH----
Q 010830 93 DSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM----KEDGV-L----------------SL---- 147 (499)
Q Consensus 93 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m----~~~~~-~----------------~~---- 147 (499)
..++.|..+++.+.+..+.+...|.+-...--++|+.+...+++++- ...|+ . ++
T Consensus 420 etYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQ 499 (913)
T KOG0495|consen 420 ETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQ 499 (913)
T ss_pred HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHH
Confidence 34567777888777777778888877777777777777777666433 22231 1 12
Q ss_pred -----------------HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHh
Q 010830 148 -----------------PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK 210 (499)
Q Consensus 148 -----------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~ 210 (499)
.||..-.+.|.+.+.++-|..+|....+-- .-+...|......--.. |..+....+|++..
T Consensus 500 AIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~h-gt~Esl~Allqkav 577 (913)
T KOG0495|consen 500 AIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSH-GTRESLEALLQKAV 577 (913)
T ss_pred HHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhc-CcHHHHHHHHHHHH
Confidence 244444455666667777777777766541 23444555544444444 88888888888888
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHh
Q 010830 211 KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290 (499)
Q Consensus 211 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 290 (499)
...+.....|......+-..|++..|..++.+.. ...|++...|-.-+.....+.++++|..+|.+....+ |+..
T Consensus 578 ~~~pkae~lwlM~ake~w~agdv~~ar~il~~af---~~~pnseeiwlaavKle~en~e~eraR~llakar~~s--gTeR 652 (913)
T KOG0495|consen 578 EQCPKAEILWLMYAKEKWKAGDVPAARVILDQAF---EANPNSEEIWLAAVKLEFENDELERARDLLAKARSIS--GTER 652 (913)
T ss_pred HhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHH---HhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccC--Ccch
Confidence 8778888888888888889999999999999984 4578788899999999999999999999999877644 7777
Q ss_pred hHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 010830 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370 (499)
Q Consensus 291 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 370 (499)
.|.--+..---.+..++|.+++++.++. ++.-...|..+.+.+-+.++++.|.+.|..-.+. ++-.+..|..+...
T Consensus 653 v~mKs~~~er~ld~~eeA~rllEe~lk~---fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakl 728 (913)
T KOG0495|consen 653 VWMKSANLERYLDNVEEALRLLEEALKS---FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKL 728 (913)
T ss_pred hhHHHhHHHHHhhhHHHHHHHHHHHHHh---CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHH
Confidence 8877777777788999999999998885 2333457777888888888888888887665543 33334456666666
Q ss_pred HHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHC----C--------------------
Q 010830 371 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN----G-------------------- 426 (499)
Q Consensus 371 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~-------------------- 426 (499)
--+.|.+-.|..++++..-.+ +-+...|...|+.-.+.|+.+.|..+..+..+. |
T Consensus 729 eEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~ 807 (913)
T KOG0495|consen 729 EEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSI 807 (913)
T ss_pred HHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHH
Confidence 667788888888888887765 346777888888888888888887766555431 1
Q ss_pred -----CCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc
Q 010830 427 -----ILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 482 (499)
Q Consensus 427 -----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 482 (499)
..-|..+.-.+...+....++++|.+.|.+.++.+. -+..+|..+...+.++|..
T Consensus 808 DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~-d~GD~wa~fykfel~hG~e 867 (913)
T KOG0495|consen 808 DALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP-DNGDAWAWFYKFELRHGTE 867 (913)
T ss_pred HHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC-ccchHHHHHHHHHHHhCCH
Confidence 122334444555666777888999999999887652 2457888899999999965
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=4e-12 Score=119.08 Aligned_cols=287 Identities=13% Similarity=0.071 Sum_probs=196.2
Q ss_pred ChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhcc---CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010830 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI---VDPDGDSFAILLEGWEKEGNVEEANK 238 (499)
Q Consensus 162 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~ll~~~~~~g~~~~a~~ 238 (499)
+..+|...|..+..+ +.-+..+...+-.+|... +++++|+.+|+.+++. ...+..+|.+.+--+-+. -+---
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl-~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~---v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFEL-IEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE---VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh---HHHHH
Confidence 567788888875443 223335555666778877 8888888888887662 223556666655433221 11111
Q ss_pred HHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 010830 239 TFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP-TLKFFSNALDILVKLNDSTHAVQLWDIMVG 317 (499)
Q Consensus 239 ~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 317 (499)
+-+.+. ...|+.+.+|.++.++|.-.++.+.|++.|++..+.+ | ...+|+.+-.-+.....+|.|...|+..+.
T Consensus 409 Laq~Li---~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 409 LAQDLI---DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred HHHHHH---hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 222232 2245566788888888888888999988888877754 4 567888777778888888888888888876
Q ss_pred cCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChh
Q 010830 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 397 (499)
Q Consensus 318 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 397 (499)
.. +.+-..|.-+.-.|.+.++++.|+-.|++..+-+.. +.+....+...+.+.|+.++|+++++++.....+ |+.
T Consensus 484 ~~---~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l 558 (638)
T KOG1126|consen 484 VD---PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPL 558 (638)
T ss_pred CC---chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cch
Confidence 42 233445556677788888899998888888874322 4566677777788888889999999888876533 333
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHHCCCCChH-HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccC
Q 010830 398 NCATAITMLLDADEPEIAIEIWNYILENGILPLE-ASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 465 (499)
Q Consensus 398 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~ 465 (499)
.--.-+..+...+++++|...++++++ +.|+. .+|..+...|.+.|+.+.|+.-|--+.+.+-++.
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 333345556667888899999888887 44544 4555666778888888888888888876554443
No 46
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=2.1e-09 Score=96.95 Aligned_cols=354 Identities=10% Similarity=0.082 Sum_probs=252.4
Q ss_pred cCCchhHHHHHH-HhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 010830 92 YDSPSSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSF 170 (499)
Q Consensus 92 ~~~~~~a~~~~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 170 (499)
.|+..-|.++|+ |+ ...|+..+|++.|+.-.+.+..+.|..+|++..-.+ |++.+|--..+.=-++|.+..|..+|
T Consensus 154 LgNi~gaRqiferW~--~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~H-P~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 154 LGNIAGARQIFERWM--EWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVH-PKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred hcccHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec-ccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 367777777774 54 367788888888888888888888888887776554 67777777777777788888888888
Q ss_pred HHHHhCCCCcCHHHHHHHHHHH----HccCCchHHHHHHHHHHhccCCCC--HHHHHHHHHHHHhcCCHHHHHH------
Q 010830 171 DVMSMHGVEQDVVAVNSLLSAI----CRQENQTSRALEFLNRVKKIVDPD--GDSFAILLEGWEKEGNVEEANK------ 238 (499)
Q Consensus 171 ~~m~~~g~~p~~~~~~~ll~~~----~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~------ 238 (499)
+...+. -.|...-..+..++ .++ ..++.|..+|.-....++.+ ...|......=-+-|+.....+
T Consensus 231 erAie~--~~~d~~~e~lfvaFA~fEe~q-kE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 231 ERAIEF--LGDDEEAEILFVAFAEFEERQ-KEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHH--hhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 776543 12222222333333 234 56777777777666555544 4555555554445565444333
Q ss_pred --HHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCH-------hhHHHHHHHH---HHcCCHh
Q 010830 239 --TFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL-------KFFSNALDIL---VKLNDST 306 (499)
Q Consensus 239 --~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~---~~~~~~~ 306 (499)
-++.+.+. +|-|-.+|-..++.--..|+.+...++|++.... ++|-. .+|--+=-+| ....+.+
T Consensus 308 k~qYE~~v~~---np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 308 KFQYEKEVSK---NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhHHHHHHHh---CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 23344333 5667778888888888889999999999998764 34421 2232222222 2568899
Q ss_pred HHHHHHHHHHhcCCCCCCCHhHHHHHHHHH----HcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHH
Q 010830 307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLL----CNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382 (499)
Q Consensus 307 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~----~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 382 (499)
.+.++|+..++. ++-..+||..+=-.| .++.++..|.+++..... ..|-..+|..-|..-.+.++++.+..
T Consensus 384 rtr~vyq~~l~l---IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRk 458 (677)
T KOG1915|consen 384 RTRQVYQACLDL---IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRK 458 (677)
T ss_pred HHHHHHHHHHhh---cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHH
Confidence 999999999885 555666666554444 467889999999987764 67888899998988899999999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCC-CCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 010830 383 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG-ILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461 (499)
Q Consensus 383 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 461 (499)
++++.++-+. -+..+|......-...|+.+.|..+|.-.++.. +......|.+.|..-...|.+++|..+++++++..
T Consensus 459 LYEkfle~~P-e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 459 LYEKFLEFSP-ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHHHHhcCh-HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 9999999763 367788888777788899999999999888633 34455678888888888999999999999998753
No 47
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.53 E-value=9.5e-10 Score=97.32 Aligned_cols=295 Identities=13% Similarity=0.109 Sum_probs=234.3
Q ss_pred HHHHHHHHh--CCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 010830 117 NLMVDVLGK--NGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194 (499)
Q Consensus 117 ~~li~~~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 194 (499)
..+..+..+ .|++.+|.++..+-.+.+......|..-+.+--..|+.+.+-.++.+.-+..-.++...+-+.......
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 344455444 599999999999988888767777888888889999999999999999876336667777777888888
Q ss_pred cCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCch------HHhHHHHHHHHhcCC
Q 010830 195 QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH------VLAYETFLITLIRGK 268 (499)
Q Consensus 195 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~------~~~~~~li~~~~~~~ 268 (499)
. |+++.|..-.+++.+.-+.+..+......+|.+.|++.....+...+.+. +.--+. ..+|+.+++-....+
T Consensus 166 ~-~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka-~~l~~~e~~~le~~a~~glL~q~~~~~ 243 (400)
T COG3071 166 R-RDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKA-GLLSDEEAARLEQQAWEGLLQQARDDN 243 (400)
T ss_pred C-CCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHc-cCCChHHHHHHHHHHHHHHHHHHhccc
Confidence 8 99999999999988877888999999999999999999999999999886 444311 235777777777766
Q ss_pred CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHH
Q 010830 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348 (499)
Q Consensus 269 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 348 (499)
..+.-...+++.-.. .+-+...-.+++.-+..+|+.++|.++..+..+.+ ..|+ -...-.+.+-++.+.-++.
T Consensus 244 ~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~--~D~~----L~~~~~~l~~~d~~~l~k~ 316 (400)
T COG3071 244 GSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ--WDPR----LCRLIPRLRPGDPEPLIKA 316 (400)
T ss_pred cchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc--cChh----HHHHHhhcCCCCchHHHHH
Confidence 666655666654432 34456677788889999999999999999999887 4454 1222345667788877777
Q ss_pred HHHHHH-CCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 010830 349 FDQMVF-HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 424 (499)
Q Consensus 349 ~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 424 (499)
.++-.+ .+..| ..+.+|...|.+++.+.+|...|+..++. .|+..+|+.+.+++.+.|+.++|.++.++..-
T Consensus 317 ~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 317 AEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 776555 34444 77888999999999999999999988775 58999999999999999999999999988764
No 48
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.50 E-value=7.5e-09 Score=97.13 Aligned_cols=374 Identities=11% Similarity=-0.015 Sum_probs=215.6
Q ss_pred cCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 010830 92 YDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171 (499)
Q Consensus 92 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 171 (499)
...++.|.-++..+.+-.+.+...|.+ |++..-++.|..+++..++.-+-+...|.+-...=-.+|+.+...++..
T Consensus 389 lE~~~darilL~rAveccp~s~dLwlA----larLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~ 464 (913)
T KOG0495|consen 389 LEEPEDARILLERAVECCPQSMDLWLA----LARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIID 464 (913)
T ss_pred ccChHHHHHHHHHHHHhccchHHHHHH----HHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 345666888888777766777777754 5566778999999999999888888899998888888999999888876
Q ss_pred H----HHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhc-cC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010830 172 V----MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IV--DPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244 (499)
Q Consensus 172 ~----m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~-~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 244 (499)
+ +...|+..+...|-.=...|-.. |..-.+..+...... |+ ..-..||+.-...|.+.+.++-|..+|....
T Consensus 465 rgl~~L~~ngv~i~rdqWl~eAe~~e~a-gsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~al 543 (913)
T KOG0495|consen 465 RGLSELQANGVEINRDQWLKEAEACEDA-GSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHAL 543 (913)
T ss_pred HHHHHHhhcceeecHHHHHHHHHHHhhc-CChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHH
Confidence 5 35567777777776666666666 666666666655433 22 2234566666666777777777777766663
Q ss_pred HccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCC
Q 010830 245 ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324 (499)
Q Consensus 245 ~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 324 (499)
+ +.|.+...|...+..--..|..+....+|++....- +-....|......+-..|+...|..++.+..+.. +-
T Consensus 544 q---vfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~---pn 616 (913)
T KOG0495|consen 544 Q---VFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN---PN 616 (913)
T ss_pred h---hccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC---CC
Confidence 3 345455566666666566666666666666655432 2233344444455555666666666666666553 33
Q ss_pred CHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 010830 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404 (499)
Q Consensus 325 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 404 (499)
+...|-.-+.....+.+++.|..+|.+... ..|+...|..-+...-..+..++|.+++++.++. ++.-...|..+.+
T Consensus 617 seeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQ 693 (913)
T KOG0495|consen 617 SEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQ 693 (913)
T ss_pred cHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhH
Confidence 555666666666666666666666666554 2344444444444444455566666666555543 1112233444444
Q ss_pred HHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc
Q 010830 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 482 (499)
Q Consensus 405 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 482 (499)
.+-+.++.+.|.+.|..-.+. ++-.+..|-.|.+.--+.|..-+|..+++...-++. -+...|-..|+.=.+.|..
T Consensus 694 i~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~ 769 (913)
T KOG0495|consen 694 IEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNK 769 (913)
T ss_pred HHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCH
Confidence 444444444444444332221 111222333333333334444444444444433321 1333344444444444433
No 49
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.48 E-value=5.2e-09 Score=98.11 Aligned_cols=410 Identities=13% Similarity=0.106 Sum_probs=260.0
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHhhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCH
Q 010830 68 IESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSL 147 (499)
Q Consensus 68 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 147 (499)
+...|.+.+-.++.-....+..-|.|+-++|....+...++...+.+.|..+.-.+...+++++|++.|......+..|.
T Consensus 30 ~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~ 109 (700)
T KOG1156|consen 30 IKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNL 109 (700)
T ss_pred HHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcH
Confidence 44455566666666666666667889999999999988888899999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccC--CCCHHHHHHHH-
Q 010830 148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV--DPDGDSFAILL- 224 (499)
Q Consensus 148 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~ll- 224 (499)
..|.-+.-.-++.|+++........+.+.. ......|..+..+..-. |+...|..+.+...+.. .|+...+....
T Consensus 110 qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~-g~y~~A~~il~ef~~t~~~~~s~~~~e~se~ 187 (700)
T KOG1156|consen 110 QILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLL-GEYKMALEILEEFEKTQNTSPSKEDYEHSEL 187 (700)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccCCCHHHHHHHHH
Confidence 888777777777777777777777766542 22334455555555555 77778888777766532 35544443322
Q ss_pred -----HHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHH-HH
Q 010830 225 -----EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL-DI 298 (499)
Q Consensus 225 -----~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li-~~ 298 (499)
....+.|..++|.+.+...... .-+....-.+-...+.+.++.++|..++..+.... ||...|...+ .+
T Consensus 188 ~Ly~n~i~~E~g~~q~ale~L~~~e~~---i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~ 262 (700)
T KOG1156|consen 188 LLYQNQILIEAGSLQKALEHLLDNEKQ---IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKA 262 (700)
T ss_pred HHHHHHHHHHcccHHHHHHHHHhhhhH---HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHH
Confidence 2334566777776666655432 12122233345566677777777777777777665 6655554433 33
Q ss_pred HHHcCCHhHHH-HHHHH----------------------------------HHhcCCCCCCCHhHHHHHHHHHHcCCChH
Q 010830 299 LVKLNDSTHAV-QLWDI----------------------------------MVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343 (499)
Q Consensus 299 ~~~~~~~~~a~-~~~~~----------------------------------~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 343 (499)
+.+-.+.-++. .+|.. +.+.| ++ .++..+...|-.-...+
T Consensus 263 lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg--~p---~vf~dl~SLyk~p~k~~ 337 (700)
T KOG1156|consen 263 LGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG--VP---SVFKDLRSLYKDPEKVA 337 (700)
T ss_pred HHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcC--CC---chhhhhHHHHhchhHhH
Confidence 32222222222 33333 33333 21 22333333332222111
Q ss_pred HHHHHHHHHHH--CCC------------CCCHHh--HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-hhhHHHHHHHH
Q 010830 344 NVFRFFDQMVF--HGA------------FPDSLT--YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT-PLNCATAITML 406 (499)
Q Consensus 344 ~a~~~~~~m~~--~g~------------~p~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~ 406 (499)
-..++.-.+.. .|. .|.... +-.+...+-+.|+++.|..+++..+.. .|+ ...|..=.+.+
T Consensus 338 ~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~ 415 (700)
T KOG1156|consen 338 FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIF 415 (700)
T ss_pred HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHH
Confidence 11111111111 011 344443 445677888999999999999999875 344 33455556788
Q ss_pred hccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHH----------HHHH
Q 010830 407 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL----------KKAF 476 (499)
Q Consensus 407 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l----------l~~~ 476 (499)
...|++++|..++++..+.+ .+|..+-..-.+-..++++.++|.++...+.+.|. +....-.- -++|
T Consensus 416 kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay 492 (700)
T KOG1156|consen 416 KHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAY 492 (700)
T ss_pred HhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHH
Confidence 89999999999999998866 45665555666667789999999999999988774 22222111 3457
Q ss_pred Hhcccc--hHHHHHHHHHHH
Q 010830 477 YNESRS--MRDIFDSLERRC 494 (499)
Q Consensus 477 ~~~g~~--a~~~~~~~~~~~ 494 (499)
.+.|++ |+.-|..+-+..
T Consensus 493 ~r~~k~g~ALKkfh~i~k~~ 512 (700)
T KOG1156|consen 493 LRQNKLGLALKKFHEIEKHY 512 (700)
T ss_pred HHHHHHHHHHHHHhhHHHHH
Confidence 777777 776666655543
No 50
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.48 E-value=5.4e-11 Score=106.36 Aligned_cols=278 Identities=11% Similarity=0.072 Sum_probs=182.1
Q ss_pred HHHhCCChHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHh-cCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCc
Q 010830 122 VLGKNGRFEQMWNAVRVMKEDGV--LSLPTFASIFDSYCG-AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198 (499)
Q Consensus 122 ~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 198 (499)
.+.+.|+++.|++++.-..+.+- .+...-|.-+-.|.+ ..++.+|.+.-+...... .-+......--...... |+
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~n-gd 505 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFAN-GD 505 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeec-Cc
Confidence 46777888888888877776652 222222222223333 336777776665554321 11111111111112223 88
Q ss_pred hHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHH
Q 010830 199 TSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278 (499)
Q Consensus 199 ~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~ 278 (499)
+++|.+.|.+.......-......+.-.+-..|++++|++.|-++. ++-.+++.....+.+.|-...+...|++++.
T Consensus 506 ~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh---~il~nn~evl~qianiye~led~aqaie~~~ 582 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLH---AILLNNAEVLVQIANIYELLEDPAQAIELLM 582 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 8888888887765333333333333345667788888888888773 4444467777778888888888888888886
Q ss_pred HHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC
Q 010830 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAF 358 (499)
Q Consensus 279 ~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 358 (499)
+.... ++.|..+..-|.+.|-+.|+-.+|.+.+-+-.+- ++.+..+...|...|....-+++++..|++..- ++
T Consensus 583 q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry---fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iq 656 (840)
T KOG2003|consen 583 QANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY---FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQ 656 (840)
T ss_pred Hhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc---cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cC
Confidence 55432 3456777778888888888888888876655443 566788888888888888888888888887655 67
Q ss_pred CCHHhHHHHHHHHH-hcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCC
Q 010830 359 PDSLTYNMIFECLI-KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411 (499)
Q Consensus 359 p~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 411 (499)
|+..-|..|+..|. +.|++++|+++++...+ .++-|..+...|++.+...|.
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhccccc
Confidence 88888888876554 57888888888888765 356677777778777776653
No 51
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=4.8e-10 Score=100.75 Aligned_cols=286 Identities=10% Similarity=0.085 Sum_probs=217.4
Q ss_pred hCCChHHHHHHHHHHHhCCCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHhCCCC--cCHHHHHHHHHHHHccCCchHH
Q 010830 125 KNGRFEQMWNAVRVMKEDGVLSLPTFASI-FDSYCGAGKYDEAVMSFDVMSMHGVE--QDVVAVNSLLSAICRQENQTSR 201 (499)
Q Consensus 125 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~~ 201 (499)
...+.+++++-.+.....|.++..-+.+. ..+.-...+++.|+.+|+++.+...- -|..+|+.++-.--.+ .
T Consensus 239 el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~-----s 313 (559)
T KOG1155|consen 239 ELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK-----S 313 (559)
T ss_pred HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh-----H
Confidence 33456666666777777776554444443 34455678999999999999876311 2667787776543222 2
Q ss_pred HHHHHHH-HhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHH
Q 010830 202 ALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280 (499)
Q Consensus 202 a~~~~~~-~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m 280 (499)
.+.++.+ .-...+--..|+.++.+.|.-.++.++|...|++.. .++|.....|+.+..-|...++...|.+-++..
T Consensus 314 kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRAL---kLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 314 KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRAL---KLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHH---hcCcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 2222222 222334566788899999999999999999999994 558878889999999999999999999999998
Q ss_pred hhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC
Q 010830 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPD 360 (499)
Q Consensus 281 ~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 360 (499)
.+-. +.|-..|-.+..+|.-.+...-|.-.|++..+.. +-|...|.+|..+|.+.++.++|++.|......|-. +
T Consensus 391 vdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k---PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e 465 (559)
T KOG1155|consen 391 VDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK---PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-E 465 (559)
T ss_pred HhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC---CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-c
Confidence 8765 4578889999999999999999999999999864 558999999999999999999999999999987543 6
Q ss_pred HHhHHHHHHHHHhcCCHhHHHHHHHHHHHC----CCCCC--hhhHHHHHHHHhccCChhHHHHHHHHHH
Q 010830 361 SLTYNMIFECLIKNKRVHEVEKFFHEMIKN----EWQPT--PLNCATAITMLLDADEPEIAIEIWNYIL 423 (499)
Q Consensus 361 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~ 423 (499)
...+..+.+.|-+.++.++|...|+.-++. |...+ ......|...+.+.+++++|........
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 688999999999999999999988877652 33222 2233345566677788887776555443
No 52
>PRK12370 invasion protein regulator; Provisional
Probab=99.44 E-value=2.9e-10 Score=112.85 Aligned_cols=273 Identities=11% Similarity=0.033 Sum_probs=191.0
Q ss_pred HHHhCCCCCHHHHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCcCH-HHHHHHHHHHH---c-----cCCchHHHH
Q 010830 138 VMKEDGVLSLPTFASIFDSYCG-----AGKYDEAVMSFDVMSMHGVEQDV-VAVNSLLSAIC---R-----QENQTSRAL 203 (499)
Q Consensus 138 ~m~~~~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~---~-----~~~~~~~a~ 203 (499)
+.......+...|...+++-.. .+++++|.+.|++..+. .|+. ..|..+..++. . ..+++++|.
T Consensus 247 ~~~~~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~ 324 (553)
T PRK12370 247 TKQISELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAK 324 (553)
T ss_pred hcccCCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHH
Confidence 3334555566666666665322 23567899999988866 5543 34444433332 1 115588999
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC
Q 010830 204 EFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283 (499)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 283 (499)
..+++..+..+.+...+..+...+...|++++|...|++..+. .|++...+..+...+...|++++|+..+++..+.
T Consensus 325 ~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l---~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l 401 (553)
T PRK12370 325 EHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL---SPISADIKYYYGWNLFMAGQLEEALQTINECLKL 401 (553)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9999988877778899999999999999999999999999654 7888888999999999999999999999998876
Q ss_pred CCCCCH-hhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCH-
Q 010830 284 NCFPTL-KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS- 361 (499)
Q Consensus 284 ~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~- 361 (499)
. |+. ..+..++..+...|++++|...++++.+.. .+-+...+..+...+...|+.++|...+.++... .|+.
T Consensus 402 ~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~--~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~ 475 (553)
T PRK12370 402 D--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH--LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGL 475 (553)
T ss_pred C--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc--cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhH
Confidence 5 432 233344555777899999999999988653 1224556777888889999999999999887653 3343
Q ss_pred HhHHHHHHHHHhcCCHhHHHHHHHHHHHC-CCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCC
Q 010830 362 LTYNMIFECLIKNKRVHEVEKFFHEMIKN-EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 426 (499)
Q Consensus 362 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 426 (499)
...+.+...|...| ++|...++.+.+. ...+....+ +-..+.-.|+.+.+..+ +++.+.+
T Consensus 476 ~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 476 IAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 34455555667666 4788877777664 222322223 33334456677766655 7777654
No 53
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.43 E-value=1.8e-10 Score=101.67 Aligned_cols=200 Identities=13% Similarity=0.063 Sum_probs=133.5
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 010830 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191 (499)
Q Consensus 112 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 191 (499)
....+..+...+...|++++|.+.+++..+..+.+...+..+...+...|++++|.+.+++..+.+ +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 356677777888888888888888888877766667777778888888888888888888776653 3344555566666
Q ss_pred HHccCCchHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCC
Q 010830 192 ICRQENQTSRALEFLNRVKKI--VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269 (499)
Q Consensus 192 ~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~ 269 (499)
+... |++++|...+++.... .......+..+...+...|++++|.+.+++..+. .|++...+..+...+...|+
T Consensus 109 ~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~ 184 (234)
T TIGR02521 109 LCQQ-GKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI---DPQRPESLLELAELYYLRGQ 184 (234)
T ss_pred HHHc-ccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCChHHHHHHHHHHHHcCC
Confidence 6666 7777777777776542 1223445556666677777777777777776543 44455566667777777777
Q ss_pred HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 010830 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317 (499)
Q Consensus 270 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 317 (499)
+++|...+++..+. ...+...+..+...+...|+.+.|..+.+.+..
T Consensus 185 ~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 185 YKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77777777766654 233444555555666666666666666655543
No 54
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=3.7e-10 Score=104.00 Aligned_cols=271 Identities=12% Similarity=0.048 Sum_probs=224.8
Q ss_pred cCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 010830 92 YDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171 (499)
Q Consensus 92 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 171 (499)
..+..+..++++...+..+++...+..-|..+...|+..+-..+=..+.+..+..+.+|-++.-.|.-.|+..+|.+.|.
T Consensus 257 ~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~S 336 (611)
T KOG1173|consen 257 GCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFS 336 (611)
T ss_pred cChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHH
Confidence 46788899999988888888999999999999999999988888889999888888999999999999999999999998
Q ss_pred HHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCC
Q 010830 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251 (499)
Q Consensus 172 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 251 (499)
+..... .-=...|-..-..++-. +..++|...+....+-++.....+--+.--|.+.++++.|.+.|.+. .++.|
T Consensus 337 Kat~lD-~~fgpaWl~fghsfa~e-~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A---~ai~P 411 (611)
T KOG1173|consen 337 KATTLD-PTFGPAWLAFGHSFAGE-GEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQA---LAIAP 411 (611)
T ss_pred HHhhcC-ccccHHHHHHhHHhhhc-chHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHH---HhcCC
Confidence 875432 22346788888888888 99999999998877654444444455566788899999999999998 68899
Q ss_pred chHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC----C--CCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCC
Q 010830 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGE----N--CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN 325 (499)
Q Consensus 252 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 325 (499)
.|+...+-+.-...+.+.+.+|..+|+..... + ......+++.|..+|.+.+..++|+..+++.+... +.|
T Consensus 412 ~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~---~k~ 488 (611)
T KOG1173|consen 412 SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS---PKD 488 (611)
T ss_pred CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC---CCc
Confidence 99999999999999999999999999876521 1 11245568888999999999999999999998874 678
Q ss_pred HhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 010830 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 372 (499)
Q Consensus 326 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 372 (499)
..++.++.-.|...|+++.|.+.|.+... +.|+..+...++..+.
T Consensus 489 ~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 489 ASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 99999999999999999999999998876 6788777777766443
No 55
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.42 E-value=1e-11 Score=119.60 Aligned_cols=274 Identities=14% Similarity=0.175 Sum_probs=162.5
Q ss_pred HHHHHHHhCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhcc
Q 010830 134 NAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI 212 (499)
Q Consensus 134 ~~~~~m~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~ 212 (499)
+.+-.+...|+ |+..||..+|..|+..|+++.|- +|.-|.-.....+...|+.++.+.... ++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~A-nd~Enpk--------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEA-NDAENPK--------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhccccc-ccccCCC---------
Confidence 34455556663 66666777777777777766666 666666555556666666666666555 5554443
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHh-hCCCCCCHhh
Q 010830 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK-GENCFPTLKF 291 (499)
Q Consensus 213 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~~~~~p~~~~ 291 (499)
.|...+|..|..+|...||+.. |+...+ -...++..+...|-......++..+. ..+..||..+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veq----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n 144 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQ----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN 144 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH----HHHHHH----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH
Confidence 4666667777777777666654 222221 01223333444444444444443322 2233344322
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 010830 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECL 371 (499)
Q Consensus 292 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 371 (499)
.+.-..-.|-++.+.+++..+-.... ..|..+ +++-+... .....++........-.|++.+|.+++.+-
T Consensus 145 ---~illlv~eglwaqllkll~~~Pvsa~-~~p~~v----fLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~a 214 (1088)
T KOG4318|consen 145 ---AILLLVLEGLWAQLLKLLAKVPVSAW-NAPFQV----FLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRA 214 (1088)
T ss_pred ---HHHHHHHHHHHHHHHHHHhhCCcccc-cchHHH----HHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHH
Confidence 33334445556666555544332210 111111 23333322 222333333332211158888899988888
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCC
Q 010830 372 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 446 (499)
Q Consensus 372 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 446 (499)
..+|+.+.|..++.+|.+.|++.+..-|..|+-+ .++...+..+++.|.+.|+.|+..|+...+..+...|.
T Consensus 215 laag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 215 LAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 8889999999999999888888888877777755 77888888888888888999999888888877777554
No 56
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.42 E-value=1.1e-10 Score=112.72 Aligned_cols=336 Identities=15% Similarity=0.063 Sum_probs=194.1
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHH
Q 010830 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN 186 (499)
Q Consensus 108 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 186 (499)
|..||..+|.++|..||..|+.+.|- +|.-|.-+. +.+...|+.++.+....++.+.+. .|...+|.
T Consensus 20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt 87 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYT 87 (1088)
T ss_pred cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHH
Confidence 56677777777777777777777776 777666666 345556777777666666666554 56666777
Q ss_pred HHHHHHHccCCchHH---HHH--------------------HHHHHhc--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010830 187 SLLSAICRQENQTSR---ALE--------------------FLNRVKK--IVDPDGDSFAILLEGWEKEGNVEEANKTFG 241 (499)
Q Consensus 187 ~ll~~~~~~~~~~~~---a~~--------------------~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 241 (499)
.|+.+|... ||+.. +++ ++-.+.- +.-||.. .++....-.|-++.+.+++.
T Consensus 88 ~Ll~ayr~h-GDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqllkll~ 163 (1088)
T KOG4318|consen 88 NLLKAYRIH-GDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLKLLA 163 (1088)
T ss_pred HHHHHHHhc-cchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHHHHHh
Confidence 777777766 66544 111 1111110 1122222 23334445566666666666
Q ss_pred HHhHccCCCCchHHhHHHHHHHHhcC-CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCC
Q 010830 242 EMVERFEWNPEHVLAYETFLITLIRG-KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF 320 (499)
Q Consensus 242 ~~~~~~~~~p~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 320 (499)
.+.......| . ..+++-+... ..+++-..+.....+ .|+..+|..++++....|+.+.|..++.+|.+.|
T Consensus 164 ~~Pvsa~~~p-~----~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g- 234 (1088)
T KOG4318|consen 164 KVPVSAWNAP-F----QVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG- 234 (1088)
T ss_pred hCCcccccch-H----HHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC-
Confidence 6544312222 1 1123333333 334444444443333 4888899999999999999999999999999998
Q ss_pred CCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHH
Q 010830 321 NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400 (499)
Q Consensus 321 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 400 (499)
++.+.+-|-.|+-+ .++...+..++.-|.+.|+.|+..|+..-+..+..+|....+ +.|. +....++
T Consensus 235 -fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~--------~e~s-q~~hg~t 301 (1088)
T KOG4318|consen 235 -FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG--------EEGS-QLAHGFT 301 (1088)
T ss_pred -CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc--------cccc-chhhhhh
Confidence 66676666666655 777888888888888899999999988888777776552222 1222 2222222
Q ss_pred HHHHHHhccC-----ChhH--HHHHHHHHH---HCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHc--CCcc-CHH
Q 010830 401 TAITMLLDAD-----EPEI--AIEIWNYIL---ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR--RILI-YEV 467 (499)
Q Consensus 401 ~li~~~~~~g-----~~~~--a~~~~~~m~---~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~p-~~~ 467 (499)
+-+..-.-.| .++. +.-+..... -.|+.....+|...+. ....|+-++..++...|..- ...+ +..
T Consensus 302 Aavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~ 380 (1088)
T KOG4318|consen 302 AAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVD 380 (1088)
T ss_pred HHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHH
Confidence 2222222223 1111 111112221 1344444455554443 33478888888888888642 2222 345
Q ss_pred HHHHHHHHHHhcccc
Q 010830 468 TMHKLKKAFYNESRS 482 (499)
Q Consensus 468 ~~~~ll~~~~~~g~~ 482 (499)
.|..++.-|.+.-+.
T Consensus 381 a~~~~lrqyFrr~e~ 395 (1088)
T KOG4318|consen 381 AFGALLRQYFRRIER 395 (1088)
T ss_pred HHHHHHHHHHHHHHh
Confidence 677777777665444
No 57
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=4.8e-09 Score=95.11 Aligned_cols=379 Identities=13% Similarity=0.084 Sum_probs=206.3
Q ss_pred hcCCchhHHHHHHHhcCCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010830 91 SYDSPSSAVDFFRWAGRGQRLS-PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS 169 (499)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 169 (499)
..+.+++|.++|.|+.. .+|| +.-|.....+|...|+++++.+--....+.++.-+..+.--..++-..|++++|+.=
T Consensus 127 ~~kkY~eAIkyY~~AI~-l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D 205 (606)
T KOG0547|consen 127 RNKKYDEAIKYYTQAIE-LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFD 205 (606)
T ss_pred hcccHHHHHHHHHHHHh-cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHh
Confidence 35789999999999987 4555 889999999999999999988877777777655555666666677777777776533
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHH---------Hhc---cCCCCHHHHHHHHHHHH---------
Q 010830 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR---------VKK---IVDPDGDSFAILLEGWE--------- 228 (499)
Q Consensus 170 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~---------~~~---~~~~~~~~~~~ll~~~~--------- 228 (499)
..-. +++.++... .-.-.+.+++++ +++ .+-|+.....+....+.
T Consensus 206 ~tv~-------------ci~~~F~n~-s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~ 271 (606)
T KOG0547|consen 206 VTVL-------------CILEGFQNA-SIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDN 271 (606)
T ss_pred hhHH-------------HHhhhcccc-hhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccC
Confidence 2221 111111111 111111111111 110 11122211111111110
Q ss_pred ----------------hcC---CHHHHHHHHHHHhHccCCCC----ch------HHhHHHHHHHHhcCCCHHHHHHHHHH
Q 010830 229 ----------------KEG---NVEEANKTFGEMVERFEWNP----EH------VLAYETFLITLIRGKQVDEALKFLRV 279 (499)
Q Consensus 229 ----------------~~g---~~~~a~~~~~~~~~~~~~~p----~~------~~~~~~li~~~~~~~~~~~a~~~~~~ 279 (499)
..+ .++.|.+.+.+-.......+ .| ..+.......+.-.|+.-.|..-|+.
T Consensus 272 ~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~ 351 (606)
T KOG0547|consen 272 KSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDA 351 (606)
T ss_pred CCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHH
Confidence 001 12222222211111000000 00 01111111122333666666666766
Q ss_pred HhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC
Q 010830 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFP 359 (499)
Q Consensus 280 m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 359 (499)
.+...-.++. .|--+..+|....+.++..+.|......+ +-|..+|..-.+.+.-.++++.|..=|++.++. .|
T Consensus 352 ~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld---p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~p 425 (606)
T KOG0547|consen 352 AIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD---PENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DP 425 (606)
T ss_pred HHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC---CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--Ch
Confidence 6665433322 14455556677777777777777777654 345666666666666667777777777777663 23
Q ss_pred -CHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCC-----C--CChH
Q 010830 360 -DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG-----I--LPLE 431 (499)
Q Consensus 360 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~--~p~~ 431 (499)
+...|..+..+..+.++++++...|++.+++ ++-.+..|+.....+...++++.|.+.|+..++.. + .+.+
T Consensus 426 e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~p 504 (606)
T KOG0547|consen 426 ENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAP 504 (606)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchh
Confidence 3345555555566677777777777777663 44456677777777777777777777777766421 1 1112
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc--hHHHHHHHHHH
Q 010830 432 ASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS--MRDIFDSLERR 493 (499)
Q Consensus 432 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~--a~~~~~~~~~~ 493 (499)
.+.-.++..-.+ +++..|.+++.+..+.+.+ ....|..|...-.+.|+. |+++|+.-..-
T Consensus 505 lV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 505 LVHKALLVLQWK-EDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred hhhhhHhhhchh-hhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 222233322233 6777777777777655432 335666666666666666 77777665443
No 58
>PRK12370 invasion protein regulator; Provisional
Probab=99.40 E-value=4.9e-10 Score=111.22 Aligned_cols=267 Identities=11% Similarity=0.023 Sum_probs=167.3
Q ss_pred CHHHHHHHHHHHHc----cCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHH---------hcCCHHHHHHHHHHHhHcc
Q 010830 181 DVVAVNSLLSAICR----QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE---------KEGNVEEANKTFGEMVERF 247 (499)
Q Consensus 181 ~~~~~~~ll~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~---------~~g~~~~a~~~~~~~~~~~ 247 (499)
+...|...+.+... ..++.++|..+|++..+..+.+...|..+..+|. ..+++++|...+++..+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~-- 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE-- 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh--
Confidence 44455555554321 1145678888888877655556666666655543 22447788888888754
Q ss_pred CCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHh
Q 010830 248 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327 (499)
Q Consensus 248 ~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 327 (499)
+.|++...+..+...+...|++++|...|++..+.+ +.+...+..+..++...|++++|...+++..+.. +.+..
T Consensus 333 -ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~---P~~~~ 407 (553)
T PRK12370 333 -LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD---PTRAA 407 (553)
T ss_pred -cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCChh
Confidence 477788888888888888888888888888887765 2235566777778888888888888888888754 22233
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-hhhHHHHHHHH
Q 010830 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT-PLNCATAITML 406 (499)
Q Consensus 328 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~ 406 (499)
.+..++..+...|++++|...++++.+....-+...+..+..++...|+.++|...+.++... .|+ ....+.+...|
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEY 485 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHH
Confidence 333444456667788888888888765422123444566667777888888888888776553 233 23334444555
Q ss_pred hccCChhHHHHHHHHHHHC-CCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 010830 407 LDADEPEIAIEIWNYILEN-GILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461 (499)
Q Consensus 407 ~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 461 (499)
...| +.|...++.+.+. .-.+....+ +-..|.-.|+.+.+..+ +++.+.+
T Consensus 486 ~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 486 CQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 6666 4666666665541 111211222 23334455666666665 7776553
No 59
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.38 E-value=5.8e-10 Score=98.39 Aligned_cols=197 Identities=12% Similarity=0.093 Sum_probs=84.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 010830 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299 (499)
Q Consensus 220 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 299 (499)
+..+...|...|++++|.+.+++..+. .|.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 34 ~~~la~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 34 RVQLALGYLEQGDLEVAKENLDKALEH---DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 333444444444444444444444322 23333344444444444444444444444443322 11223333344444
Q ss_pred HHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhH
Q 010830 300 VKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379 (499)
Q Consensus 300 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 379 (499)
...|++++|.+.+++...... .......+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPL-YPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHcccHHHHHHHHHHHHhccc-cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 444444444444444443210 11122334444444455555555555555544421 1123344444445555555555
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHH
Q 010830 380 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 423 (499)
Q Consensus 380 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 423 (499)
|...+++..+. .+.+...+..+...+...|+.++|..+++.+.
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55555554443 12233334444444445555555555544443
No 60
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=5.5e-09 Score=96.47 Aligned_cols=288 Identities=9% Similarity=-0.008 Sum_probs=187.8
Q ss_pred cCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHH
Q 010830 180 QDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYET 259 (499)
Q Consensus 180 p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~ 259 (499)
-+.........-+... +++.+..++++.+-+..+++...+..-|..+.+.|+..+-..+=.++.+. .|+.+.+|-+
T Consensus 242 ~~~dll~~~ad~~y~~-c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~---yP~~a~sW~a 317 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYG-CRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL---YPSKALSWFA 317 (611)
T ss_pred hcHHHHHHHHHHHHHc-ChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh---CCCCCcchhh
Confidence 3444444444555555 77777777777777777777777777777777777777776666667554 5666677888
Q ss_pred HHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcC
Q 010830 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339 (499)
Q Consensus 260 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 339 (499)
+.--|...|+..+|.+.|.+....+- .-...|-....+|+-.|..++|...+...-+.- +-...-+--+.--|.+.
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~---~G~hlP~LYlgmey~~t 393 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM---PGCHLPSLYLGMEYMRT 393 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc---cCCcchHHHHHHHHHHh
Confidence 77777777888888888776543221 113456666777777777777777776665531 11111122233346667
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHC--CC----CCChhhHHHHHHHHhccCChh
Q 010830 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN--EW----QPTPLNCATAITMLLDADEPE 413 (499)
Q Consensus 340 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~----~p~~~~~~~li~~~~~~g~~~ 413 (499)
++.+.|.+.|.+...- .+-|+...+-+.......+.+.+|..+|+..+.. .. .--..+++.|.++|.+.+.++
T Consensus 394 ~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~ 472 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE 472 (611)
T ss_pred ccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH
Confidence 7777888887777653 2235566666666666677777888777776632 00 012335677777788888888
Q ss_pred HHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhc
Q 010830 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 479 (499)
Q Consensus 414 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 479 (499)
+|+..++...... +-+..++.++.-.|...|+++.|.+.|.+.+ .+.||..+...++..+...
T Consensus 473 eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 473 EAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHHh
Confidence 8888887777643 4466777777777777788888888887776 5567777777776665544
No 61
>PF13041 PPR_2: PPR repeat family
Probab=99.37 E-value=1.7e-12 Score=82.63 Aligned_cols=49 Identities=31% Similarity=0.677 Sum_probs=26.1
Q ss_pred CCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 010830 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 372 (499)
Q Consensus 324 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 372 (499)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4455555555555555555555555555555555555555555555544
No 62
>PF13041 PPR_2: PPR repeat family
Probab=99.36 E-value=2e-12 Score=82.37 Aligned_cols=50 Identities=22% Similarity=0.289 Sum_probs=39.2
Q ss_pred ChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHh
Q 010830 429 PLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 478 (499)
Q Consensus 429 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 478 (499)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777888888888888888888888888877888888888888777764
No 63
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.36 E-value=5.1e-09 Score=100.53 Aligned_cols=289 Identities=15% Similarity=0.135 Sum_probs=169.2
Q ss_pred HHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcC----
Q 010830 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG---- 267 (499)
Q Consensus 192 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~---- 267 (499)
+... |++++|++.++.-.+.+.............+.+.|+.++|..+|..+.++ +|+|..-|..+..+..-.
T Consensus 14 l~e~-g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r---NPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 14 LEEA-GDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR---NPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHC-CCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHhhhcccc
Confidence 3444 77777777776665555555666666777777777777777777777655 666665566555555222
Q ss_pred -CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCC-HhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHH
Q 010830 268 -KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND-STHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345 (499)
Q Consensus 268 -~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 345 (499)
.+.+...++|+++...- |.......+.-.+..... -..+...+..+...| + +.+|+.|-..|......+-.
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kg--v---PslF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKG--V---PSLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcC--C---chHHHHHHHHHcChhHHHHH
Confidence 24566666666665433 322222222111111111 123444555566666 2 23455555555544444444
Q ss_pred HHHHHHHHHC----C----------CCCCHH--hHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhc
Q 010830 346 FRFFDQMVFH----G----------AFPDSL--TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT-PLNCATAITMLLD 408 (499)
Q Consensus 346 ~~~~~~m~~~----g----------~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~ 408 (499)
..++...... | -.|... ++..+.+.|-..|++++|++++++.++.. |+ +..|..-.+.+-+
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh 240 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHH
Confidence 4555444321 1 123332 33445566777788888888888777754 33 5567777777777
Q ss_pred cCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHH--------HHHHHHHHHhcc
Q 010830 409 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT--------MHKLKKAFYNES 480 (499)
Q Consensus 409 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--------~~~ll~~~~~~g 480 (499)
.|++++|.+.++...+.+. -|..+-+-....+.++|+.++|.+++..+...+..|-... .....++|.+.|
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred CCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888888877777553 3556666666777778888888888877776654332211 133455677777
Q ss_pred cc--hHHHHHHHHHHH
Q 010830 481 RS--MRDIFDSLERRC 494 (499)
Q Consensus 481 ~~--a~~~~~~~~~~~ 494 (499)
+. |++.|..+.+..
T Consensus 320 ~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 320 DYGLALKRFHAVLKHF 335 (517)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 77 777776666543
No 64
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.35 E-value=6.7e-09 Score=99.74 Aligned_cols=292 Identities=11% Similarity=0.096 Sum_probs=170.3
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH-cc---
Q 010830 120 VDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC-RQ--- 195 (499)
Q Consensus 120 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~--- 195 (499)
...+...|++++|++.++.-...-+.....+......+.+.|+.++|..+|..+.+. .|+...|-..+..+. -.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhccc
Confidence 345667777777777776654444444556666777777777777777777777766 455555544443333 11
Q ss_pred -CCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHH
Q 010830 196 -ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE-EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273 (499)
Q Consensus 196 -~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~-~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a 273 (499)
..+.+....+++++....+. ......+.-.+..-..+. .+...+..+..+ |+.+ +|+.+-..|....+.+-.
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~-s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K-gvPs----lF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPR-SDAPRRLPLDFLEGDEFKERLDEYLRPQLRK-GVPS----LFSNLKPLYKDPEKAAII 162 (517)
T ss_pred ccccHHHHHHHHHHHHHhCcc-ccchhHhhcccCCHHHHHHHHHHHHHHHHhc-CCch----HHHHHHHHHcChhHHHHH
Confidence 12456666777776554322 121111111111111222 233444444443 4332 566666666655555555
Q ss_pred HHHHHHHhhC----C----------CCCCH--hhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHH
Q 010830 274 LKFLRVMKGE----N----------CFPTL--KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337 (499)
Q Consensus 274 ~~~~~~m~~~----~----------~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 337 (499)
.+++...... + -.|+. .++..+...|...|+.++|.++++..++.. +..+..|..-.+.|-
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht---Pt~~ely~~KarilK 239 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT---PTLVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHH
Confidence 5555554321 1 12222 234455666777888888888888887753 334667777777888
Q ss_pred cCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhH--------HHHHHHHhcc
Q 010830 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC--------ATAITMLLDA 409 (499)
Q Consensus 338 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~--------~~li~~~~~~ 409 (499)
+.|++.+|.+.++....... -|...-+.....+.++|++++|.+++....+.+..|-...+ .-...+|.+.
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~ 318 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ 318 (517)
T ss_pred HCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888887776432 25555566667777888888888888777665543322211 2345667777
Q ss_pred CChhHHHHHHHHHH
Q 010830 410 DEPEIAIEIWNYIL 423 (499)
Q Consensus 410 g~~~~a~~~~~~m~ 423 (499)
|++..|.+.|..+.
T Consensus 319 ~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 319 GDYGLALKRFHAVL 332 (517)
T ss_pred hhHHHHHHHHHHHH
Confidence 88877777665554
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.33 E-value=2.3e-09 Score=92.16 Aligned_cols=230 Identities=12% Similarity=0.036 Sum_probs=176.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc
Q 010830 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230 (499)
Q Consensus 151 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 230 (499)
+.+.++|.+.|-+.+|.+-|+.-.+. .|-+.||..|-++|.+. ++.+.|+.++.+-.+..+-|+....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ri-dQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRI-DQPERALLVIGEGLDSFPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHh-ccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHH
Confidence 56778888999999999988887765 67788888888888888 8888888888887777777777777788888888
Q ss_pred CCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHH
Q 010830 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310 (499)
Q Consensus 231 g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 310 (499)
++.++|.++|+...+. .|.++.....+...|.-.++++-|+.+|+++.+.|+. +...|+.+--+|.-.+++|.+..
T Consensus 304 ~~~~~a~~lYk~vlk~---~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKL---HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HhHHHHHHHHHHHHhc---CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHH
Confidence 8889999998888554 5657777777778888888888888888888888864 56777777778888888888888
Q ss_pred HHHHHHhcCCCCCC--CHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010830 311 LWDIMVGIGFNLMP--NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388 (499)
Q Consensus 311 ~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 388 (499)
-|++....- -.| -..+|-.+.......|++..|.+.|+-...+.. -+...+|.|.-.-.+.|++++|..+++...
T Consensus 380 sf~RAlsta--t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 380 SFQRALSTA--TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHHhhc--cCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 888777543 223 245677777777777888888888877766532 245667777766777788888888877765
Q ss_pred HC
Q 010830 389 KN 390 (499)
Q Consensus 389 ~~ 390 (499)
..
T Consensus 457 s~ 458 (478)
T KOG1129|consen 457 SV 458 (478)
T ss_pred hh
Confidence 53
No 66
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.29 E-value=1.9e-09 Score=92.68 Aligned_cols=234 Identities=14% Similarity=0.120 Sum_probs=193.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhH-HH
Q 010830 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF-SN 294 (499)
Q Consensus 216 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~ 294 (499)
|.+=-+-+.++|.+.|.+.+|++.|+.-.+. .| .+.||..|-+.|.+.+++..|+.++.+-.+. .|...|| ..
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q---~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g 295 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ---FP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLG 295 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc---CC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhh
Confidence 3333456889999999999999999988765 44 5669999999999999999999999887664 3555555 45
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 010830 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN 374 (499)
Q Consensus 295 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 374 (499)
+.+.+-..++.++|.++|+...+.. +.++....++...|.-.++++-|+..|+++.+-|+. +...|+.+.-+|...
T Consensus 296 ~ARi~eam~~~~~a~~lYk~vlk~~---~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~ya 371 (478)
T KOG1129|consen 296 QARIHEAMEQQEDALQLYKLVLKLH---PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYA 371 (478)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHhcC---CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhh
Confidence 6778888899999999999999875 567888888888899999999999999999999886 778899999999999
Q ss_pred CCHhHHHHHHHHHHHCCCCCC--hhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHH
Q 010830 375 KRVHEVEKFFHEMIKNEWQPT--PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 452 (499)
Q Consensus 375 g~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 452 (499)
+++|-++..|++.+..--.|+ ...|-.+.......|++..|.+.|+-....+ ..+...+|.|.-.-.+.|++++|..
T Consensus 372 qQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Ars 450 (478)
T KOG1129|consen 372 QQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARS 450 (478)
T ss_pred cchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHH
Confidence 999999999999877533333 3356666777778899999999999887655 3456788888888889999999999
Q ss_pred HHHHHHHc
Q 010830 453 FAEEMLNR 460 (499)
Q Consensus 453 ~~~~m~~~ 460 (499)
+++...+.
T Consensus 451 ll~~A~s~ 458 (478)
T KOG1129|consen 451 LLNAAKSV 458 (478)
T ss_pred HHHHhhhh
Confidence 99988754
No 67
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.22 E-value=3e-06 Score=79.99 Aligned_cols=266 Identities=15% Similarity=0.203 Sum_probs=135.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCC--chHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCC---------
Q 010830 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNP--EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP--------- 287 (499)
Q Consensus 219 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--------- 287 (499)
.|..+.+.|-..|+++.|..+|++..+- ...- +=..+|......-.+..+++.|+++++........|
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V-~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKV-PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcC-CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 4666777788888888888888887553 2221 113456666677777788888888777654321111
Q ss_pred --------CHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC
Q 010830 288 --------TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFP 359 (499)
Q Consensus 288 --------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 359 (499)
+...|...++.--..|-++....+|+.++.... ..|... -.....+-.+.-++++.++|++-...---|
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri-aTPqii--~NyAmfLEeh~yfeesFk~YErgI~LFk~p 544 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI-ATPQII--INYAMFLEEHKYFEESFKAYERGISLFKWP 544 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-CCHHHH--HHHHHHHHhhHHHHHHHHHHHcCCccCCCc
Confidence 122344444544555677777777777766541 111111 001111122223444444444333321112
Q ss_pred CH-HhHHHHHHHHHh---cCCHhHHHHHHHHHHHCCCCCCh--------------------------------------h
Q 010830 360 DS-LTYNMIFECLIK---NKRVHEVEKFFHEMIKNEWQPTP--------------------------------------L 397 (499)
Q Consensus 360 ~~-~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~p~~--------------------------------------~ 397 (499)
+. ..|+.-+.-+.+ ....+.|..+|++.++ |.+|.. .
T Consensus 545 ~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~ 623 (835)
T KOG2047|consen 545 NVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLD 623 (835)
T ss_pred cHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHH
Confidence 22 233333333322 1234555555555554 333322 2
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHH---HHHHhCCChHHHHHHHHHHHH-cCCccCHHHHHHHH
Q 010830 398 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL---VGLRNLGRLSDVRRFAEEMLN-RRILIYEVTMHKLK 473 (499)
Q Consensus 398 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll---~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~ll 473 (499)
.|++.|.--...=.+.....+|++.++. -|+...-..-+ ..-++.|..+.|..++..-.+ .+...+...|...-
T Consensus 624 myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk 701 (835)
T KOG2047|consen 624 MYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWK 701 (835)
T ss_pred HHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHH
Confidence 2333333322222233333444444431 23332222222 223456888888888776554 24445666777777
Q ss_pred HHHHhcccchHHHHHHHHHH
Q 010830 474 KAFYNESRSMRDIFDSLERR 493 (499)
Q Consensus 474 ~~~~~~g~~a~~~~~~~~~~ 493 (499)
.-=.++|+. +.+.+|++.
T Consensus 702 ~FEvrHGne--dT~keMLRi 719 (835)
T KOG2047|consen 702 EFEVRHGNE--DTYKEMLRI 719 (835)
T ss_pred HHHHhcCCH--HHHHHHHHH
Confidence 777888887 788888764
No 68
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.21 E-value=9.7e-07 Score=83.33 Aligned_cols=388 Identities=14% Similarity=0.118 Sum_probs=249.6
Q ss_pred HHHHHHHHh-hcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Q 010830 82 DLVHEVLQL-SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGA 160 (499)
Q Consensus 82 ~~~~~~l~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~ 160 (499)
.++...++. -.+++...+++.+.+....+-...+.....-.+...|+-++|.+....-.+.++-+.+.|..+.-.+...
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 345555552 2356677777777776666666666666666677889999999999999998888999999999999999
Q ss_pred CChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010830 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTF 240 (499)
Q Consensus 161 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 240 (499)
.++++|+++|......+ +-|...+.-+--.-++. ++++........+-...+.....|..+..++.-.|+...|..+.
T Consensus 89 K~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~Qm-Rd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQM-RDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred hhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988764 44455555443333445 77777777777766655667778889999999999999999999
Q ss_pred HHHhHccCCCCchHHhHHHHH------HHHhcCCCHHHHHHHHHHHhhCCCCCCHhhH-HHHHHHHHHcCCHhHHHHHHH
Q 010830 241 GEMVERFEWNPEHVLAYETFL------ITLIRGKQVDEALKFLRVMKGENCFPTLKFF-SNALDILVKLNDSTHAVQLWD 313 (499)
Q Consensus 241 ~~~~~~~~~~p~~~~~~~~li------~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~~~~~~~~~a~~~~~ 313 (499)
++..+.....| +...|.... ....+.|..++|++.+..-... + .|...| ..-...+.+.+++++|..++.
T Consensus 167 ~ef~~t~~~~~-s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 167 EEFEKTQNTSP-SKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-I-VDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHhhccCC-CHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-H-HHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 99988633233 554554433 4456678888888877654332 1 232222 345677889999999999999
Q ss_pred HHHhcCCCCCCCHhHHHHHH-HHHHcCCChHHHH-HHHHHHHHCC---CCCCH--------HhHHHHHHHHHh----cC-
Q 010830 314 IMVGIGFNLMPNLIMYNAVI-GLLCNNDDVDNVF-RFFDQMVFHG---AFPDS--------LTYNMIFECLIK----NK- 375 (499)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~li-~~~~~~~~~~~a~-~~~~~m~~~g---~~p~~--------~~~~~ll~~~~~----~g- 375 (499)
.++... ||..-|.... .++.+..+.-++. .+|....+.= -.|-. .-+...++-|.+ .|
T Consensus 244 ~Ll~rn----Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~ 319 (700)
T KOG1156|consen 244 RLLERN----PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGV 319 (700)
T ss_pred HHHhhC----chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCC
Confidence 999875 6666555444 4443333333333 5555554320 00100 011111111111 11
Q ss_pred ------------CHhHHHHHHHHHH----H----CC----------CCCChhhH--HHHHHHHhccCChhHHHHHHHHHH
Q 010830 376 ------------RVHEVEKFFHEMI----K----NE----------WQPTPLNC--ATAITMLLDADEPEIAIEIWNYIL 423 (499)
Q Consensus 376 ------------~~~~a~~~~~~~~----~----~~----------~~p~~~~~--~~li~~~~~~g~~~~a~~~~~~m~ 423 (499)
+...+ .+++++. . .| -+|+...| -.++..+-+.|+++.|..+++..+
T Consensus 320 p~vf~dl~SLyk~p~k~-~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI 398 (700)
T KOG1156|consen 320 PSVFKDLRSLYKDPEKV-AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI 398 (700)
T ss_pred CchhhhhHHHHhchhHh-HHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 11111 1222221 1 11 13444433 346677788999999999999888
Q ss_pred HCCCCChH-HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc
Q 010830 424 ENGILPLE-ASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 482 (499)
Q Consensus 424 ~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 482 (499)
++ .|+. ..|-.=.+.+...|++++|..++++..+.+ .+|...-..-.+...+.++.
T Consensus 399 dH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i 455 (700)
T KOG1156|consen 399 DH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEI 455 (700)
T ss_pred cc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHcccc
Confidence 64 3433 233333466888999999999999998765 34544444555555666655
No 69
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=4.6e-07 Score=84.53 Aligned_cols=386 Identities=12% Similarity=0.053 Sum_probs=222.5
Q ss_pred HHHHHHHHH-hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Q 010830 81 PDLVHEVLQ-LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCG 159 (499)
Q Consensus 81 ~~~~~~~l~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~ 159 (499)
..++..+-. ...++.++|.+..+.+....+.+...+..-+-++.+.+++++|+++.+.-......+. -+..=..+..+
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~-~~fEKAYc~Yr 91 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS-FFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch-hhHHHHHHHHH
Confidence 344444443 4467899999999999888888889999999999999999999966543322111111 11222334457
Q ss_pred cCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCC-----------------------
Q 010830 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPD----------------------- 216 (499)
Q Consensus 160 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~----------------------- 216 (499)
.++.++|+..++... .-|..+...-...+.+. +++++|..+|+.+.+...++
T Consensus 92 lnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl-~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~ 166 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLD----RLDDKLLELRAQVLYRL-ERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQS 166 (652)
T ss_pred cccHHHHHHHHhccc----ccchHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHh
Confidence 889999999998332 22333666666777888 99999999999884322111
Q ss_pred -----HHHHHH---HHHHHHhcCCHHHHHHHHHHHhH----cc---CCCCchH-----HhHHHHHHHHhcCCCHHHHHHH
Q 010830 217 -----GDSFAI---LLEGWEKEGNVEEANKTFGEMVE----RF---EWNPEHV-----LAYETFLITLIRGKQVDEALKF 276 (499)
Q Consensus 217 -----~~~~~~---ll~~~~~~g~~~~a~~~~~~~~~----~~---~~~p~~~-----~~~~~li~~~~~~~~~~~a~~~ 276 (499)
..+|.. ....+...|++.+|+++++...+ .+ ...-++. ..---|...+-..|+.++|.++
T Consensus 167 v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i 246 (652)
T KOG2376|consen 167 VPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI 246 (652)
T ss_pred ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 112222 23344567777777777777611 10 0000011 1122344455666777777777
Q ss_pred HHHHhhCCCCCCHhhH----HHHHHHHHHc----------------------------------------------CCHh
Q 010830 277 LRVMKGENCFPTLKFF----SNALDILVKL----------------------------------------------NDST 306 (499)
Q Consensus 277 ~~~m~~~~~~p~~~~~----~~li~~~~~~----------------------------------------------~~~~ 306 (499)
+....+... +|.... |.++ +.... +..+
T Consensus 247 y~~~i~~~~-~D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~ 324 (652)
T KOG2376|consen 247 YVDIIKRNP-ADEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMD 324 (652)
T ss_pred HHHHHHhcC-CCchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 777766542 222111 1111 00000 0000
Q ss_pred HHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcC--CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHH
Q 010830 307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN--DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384 (499)
Q Consensus 307 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 384 (499)
.+.++-...-. ..| ...+.+++..+.+. ....++.+++...-+....-.....-.++......|+++.|.+++
T Consensus 325 q~r~~~a~lp~----~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 325 QVRELSASLPG----MSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred HHHHHHHhCCc----cCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 01000000000 111 22333333333222 234555556555554322222345556667778899999999999
Q ss_pred H--------HHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHC--CCCChH----HHHHHHHHHHHhCCChHHH
Q 010830 385 H--------EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN--GILPLE----ASANELLVGLRNLGRLSDV 450 (499)
Q Consensus 385 ~--------~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~----~~~~~ll~~~~~~g~~~~a 450 (499)
. .+.+.+..| .+...+...+.+.++-+.|..++.+..+. .-.+.. .++..+...-.+.|+-++|
T Consensus 400 ~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea 477 (652)
T KOG2376|consen 400 SLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEA 477 (652)
T ss_pred HHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHH
Confidence 8 444444444 45666777778888877777777776631 011111 2233333444577999999
Q ss_pred HHHHHHHHHcCCccCHHHHHHHHHHHHhcccc
Q 010830 451 RRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 482 (499)
Q Consensus 451 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 482 (499)
..+++++.+.+ .+|..+...++.+|++..-.
T Consensus 478 ~s~leel~k~n-~~d~~~l~~lV~a~~~~d~e 508 (652)
T KOG2376|consen 478 SSLLEELVKFN-PNDTDLLVQLVTAYARLDPE 508 (652)
T ss_pred HHHHHHHHHhC-CchHHHHHHHHHHHHhcCHH
Confidence 99999999854 57889999999999987655
No 70
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.21 E-value=8.3e-09 Score=97.94 Aligned_cols=239 Identities=14% Similarity=0.127 Sum_probs=144.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhC-----C-CCcCHHHHH-HHHHHHHccCCchHHHHHHHHHHhc----cC----
Q 010830 149 TFASIFDSYCGAGKYDEAVMSFDVMSMH-----G-VEQDVVAVN-SLLSAICRQENQTSRALEFLNRVKK----IV---- 213 (499)
Q Consensus 149 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~~~~~~-~ll~~~~~~~~~~~~a~~~~~~~~~----~~---- 213 (499)
+...+...|...|+++.|..+++...+. | ..|...+.. .+-..|... +++++|..+|+.+.. ..
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~-~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSL-GKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 5555667777777777777777665432 2 123333222 233445555 777777777766532 11
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHc----cCCCCchH-HhHHHHHHHHhcCCCHHHHHHHHHHHhh---CCC
Q 010830 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVER----FEWNPEHV-LAYETFLITLIRGKQVDEALKFLRVMKG---ENC 285 (499)
Q Consensus 214 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~p~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~ 285 (499)
+--..+++.|...|.+.|++++|...++...+- .+..+..+ ..++.++..+...+++++|..+++...+ .-.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 112345666677777777777766555544221 23333333 3456666777777888888877765433 111
Q ss_pred CCC----HhhHHHHHHHHHHcCCHhHHHHHHHHHHhc----CCCCCC-CHhHHHHHHHHHHcCCChHHHHHHHHHHH---
Q 010830 286 FPT----LKFFSNALDILVKLNDSTHAVQLWDIMVGI----GFNLMP-NLIMYNAVIGLLCNNDDVDNVFRFFDQMV--- 353 (499)
Q Consensus 286 ~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~--- 353 (499)
.++ ..+++.|-..|.+.|++++|+++++..+.. +....+ ....++.|...|.+.+.+++|.++|.+..
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 122 357778888888888888888888776643 111112 34567777788888888887777776543
Q ss_pred -HCCC-CCC-HHhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010830 354 -FHGA-FPD-SLTYNMIFECLIKNKRVHEVEKFFHEMI 388 (499)
Q Consensus 354 -~~g~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 388 (499)
..|. .|+ ..+|..|...|...|+++.|+++.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2332 223 2567788888888888888888877765
No 71
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=9.7e-09 Score=93.17 Aligned_cols=155 Identities=14% Similarity=0.138 Sum_probs=128.8
Q ss_pred HhhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 010830 89 QLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVM 168 (499)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 168 (499)
+...|++..|...|+.+....+.+...|-.+...|....+.++.++.|+...+.++-+..+|..-.+.+.-.+++++|..
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 35578889999999988777776666788888999999999999999999999998888899999999999999999999
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 010830 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245 (499)
Q Consensus 169 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 245 (499)
-|++.++.. +-+...|..+--+..+. +.++++...|++.++.++....+|+.....+...++++.|.+.|+...+
T Consensus 416 DF~Kai~L~-pe~~~~~iQl~~a~Yr~-~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 416 DFQKAISLD-PENAYAYIQLCCALYRQ-HKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHhhcC-hhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 999887653 33556666676777777 8888888888888888888888888888888888888888888887754
No 72
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.20 E-value=3.5e-08 Score=93.72 Aligned_cols=243 Identities=12% Similarity=0.089 Sum_probs=123.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhHc----cCC-CCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC-----C-
Q 010830 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVER----FEW-NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-----N- 284 (499)
Q Consensus 216 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~- 284 (499)
-..+...+...|...|+++.|+.+++...+. .|. .|.-....+.+...|...+++++|..+|+++... |
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3455666777777888888888877777553 111 1211122333555666667777777777665431 1
Q ss_pred CCCC-HhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCC----CCCCCH-hHHHHHHHHHHcCCChHHHHHHHHHHHHC---
Q 010830 285 CFPT-LKFFSNALDILVKLNDSTHAVQLWDIMVGIGF----NLMPNL-IMYNAVIGLLCNNDDVDNVFRFFDQMVFH--- 355 (499)
Q Consensus 285 ~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~--- 355 (499)
..|. ..+++.|-.+|.+.|++++|...++...+--. ...|.+ ..++.+...|+..++++.|..++....+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 1111 23444555566666666666666665543110 011111 22344455555566666666666544331
Q ss_pred CCCCC----HHhHHHHHHHHHhcCCHhHHHHHHHHHHHC----CC--CC-ChhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 010830 356 GAFPD----SLTYNMIFECLIKNKRVHEVEKFFHEMIKN----EW--QP-TPLNCATAITMLLDADEPEIAIEIWNYILE 424 (499)
Q Consensus 356 g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~--~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 424 (499)
-+.++ ..+++.|...|...|++++|+++++.++.. +- .+ ....++.|...|.+.+.+++|.++|.+...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 11111 134555666666666666666666655442 01 11 122344555555566666666666554432
Q ss_pred ----CCC--CChHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 010830 425 ----NGI--LPLEASANELLVGLRNLGRLSDVRRFAEEML 458 (499)
Q Consensus 425 ----~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 458 (499)
.|. +-...+|..|...|.+.|++++|.++.+...
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 111 1122445555566666666666666555544
No 73
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.17 E-value=2.5e-07 Score=80.88 Aligned_cols=377 Identities=11% Similarity=0.032 Sum_probs=192.1
Q ss_pred cCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 010830 92 YDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171 (499)
Q Consensus 92 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 171 (499)
.|+.++|+..+..+.....++...+-.|.-.+.-.|.+.+|..+-....+ ++-.-..|+...-+.++-++.....+
T Consensus 70 LgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k----~pL~~RLlfhlahklndEk~~~~fh~ 145 (557)
T KOG3785|consen 70 LGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK----TPLCIRLLFHLAHKLNDEKRILTFHS 145 (557)
T ss_pred hccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCC----ChHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 36666666666666555556666666666555555666666555433221 22233344444455555555555555
Q ss_pred HHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHhHccCCC
Q 010830 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI-LLEGWEKEGNVEEANKTFGEMVERFEWN 250 (499)
Q Consensus 172 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 250 (499)
.+... ...--+|.+..... -.+.+|++++..+... .|+....|. +.-+|.+..-++-+.++++-..+. .
T Consensus 146 ~LqD~-----~EdqLSLAsvhYmR-~HYQeAIdvYkrvL~d-n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q---~ 215 (557)
T KOG3785|consen 146 SLQDT-----LEDQLSLASVHYMR-MHYQEAIDVYKRVLQD-NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ---F 215 (557)
T ss_pred HHhhh-----HHHHHhHHHHHHHH-HHHHHHHHHHHHHHhc-ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh---C
Confidence 54321 11122233322223 4567777777776432 233334443 334556666677777777776554 5
Q ss_pred CchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCC--------------------------CCC-----HhhHHHHHHHH
Q 010830 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC--------------------------FPT-----LKFFSNALDIL 299 (499)
Q Consensus 251 p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--------------------------~p~-----~~~~~~li~~~ 299 (499)
|+++...|.......+.=.-..|..-..++.+.+- -|. ...-..++--|
T Consensus 216 pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYy 295 (557)
T KOG3785|consen 216 PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYY 295 (557)
T ss_pred CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeee
Confidence 55555666555544444222222222222222110 010 01112233445
Q ss_pred HHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHH-----HHcCCChHHHHHHHHHHHHCCCCCCHH-hHHHHHHHHHh
Q 010830 300 VKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGL-----LCNNDDVDNVFRFFDQMVFHGAFPDSL-TYNMIFECLIK 373 (499)
Q Consensus 300 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~ 373 (499)
.+.+++.+|..+.+++.. ..|-....-.++.+ ........-|.+.|+-.-+.+..-|.. --.++..++.-
T Consensus 296 L~q~dVqeA~~L~Kdl~P----ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL 371 (557)
T KOG3785|consen 296 LNQNDVQEAISLCKDLDP----TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFL 371 (557)
T ss_pred cccccHHHHHHHHhhcCC----CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHH
Confidence 677788887777665432 12322222222211 112223445555555544444433332 23445555555
Q ss_pred cCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHH-HHHHHHhCCChHHHHH
Q 010830 374 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE-LLVGLRNLGRLSDVRR 452 (499)
Q Consensus 374 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~g~~~~a~~ 452 (499)
..++++++.+++.+..--..-|...|+ +.++++..|++.+|+++|-.+....++ |..+|-. |.++|.+++.++-|..
T Consensus 372 ~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~ 449 (557)
T KOG3785|consen 372 SFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWD 449 (557)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHH
Confidence 666777777777665543333333333 567777778888888887766544444 3344444 4467778888877766
Q ss_pred HHHHHHHcCCccCHH-HHHHHHHHHHhcccc--hHHHHHHHH
Q 010830 453 FAEEMLNRRILIYEV-TMHKLKKAFYNESRS--MRDIFDSLE 491 (499)
Q Consensus 453 ~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~--a~~~~~~~~ 491 (499)
++-.+ +-..+.. ....+.+-|.+.++. |.+.|+++-
T Consensus 450 ~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE 488 (557)
T KOG3785|consen 450 MMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELE 488 (557)
T ss_pred HHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 55443 3222332 334445667777776 666666553
No 74
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.16 E-value=6.2e-07 Score=84.69 Aligned_cols=200 Identities=13% Similarity=0.036 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHH--
Q 010830 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS---LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS-- 187 (499)
Q Consensus 113 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-- 187 (499)
...|..+...+...|+.+.+.+.+....+....+ ..........+...|++++|.+.++...+.. +.|...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 4455555555656666666666555555444322 1122223334556677777777777665541 222223221
Q ss_pred -HHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhc
Q 010830 188 -LLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266 (499)
Q Consensus 188 -ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~ 266 (499)
........ +..+.+.+.++......+........+...+...|++++|.+.+++..+. .|++...+..+...+..
T Consensus 85 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---~p~~~~~~~~la~i~~~ 160 (355)
T cd05804 85 GAFGLGDFS-GMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL---NPDDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHHhcccc-cCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCcHHHHHHHHHHHH
Confidence 11111112 44444444444322222223344445556666777777777777777443 56566666666677777
Q ss_pred CCCHHHHHHHHHHHhhCCC-CCCH--hhHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 010830 267 GKQVDEALKFLRVMKGENC-FPTL--KFFSNALDILVKLNDSTHAVQLWDIMVG 317 (499)
Q Consensus 267 ~~~~~~a~~~~~~m~~~~~-~p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~ 317 (499)
.|++++|...+++.....- .++. ..|..+...+...|+.++|..++++...
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 7777777777766554321 1221 2333455566666666666666666543
No 75
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.16 E-value=7.2e-08 Score=79.32 Aligned_cols=198 Identities=14% Similarity=0.087 Sum_probs=162.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 010830 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194 (499)
Q Consensus 115 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 194 (499)
+..-|.-.|.+.|+...|..-+++..+.++.+..+|..+...|-+.|..+.|.+.|+...+.. +-+..+.|..-.-+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 555667788999999999999999999988888899999999999999999999999887763 4456677777777888
Q ss_pred cCCchHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHH
Q 010830 195 QENQTSRALEFLNRVKK--IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272 (499)
Q Consensus 195 ~~~~~~~a~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~ 272 (499)
. |.+++|...|++... ...--..+|..+.-+..+.|+.+.|...|++..+. .|+...+...+.....+.|++-.
T Consensus 116 q-g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~---dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 116 Q-GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL---DPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred C-CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh---CcCCChHHHHHHHHHHhcccchH
Confidence 8 899999999988765 33344667888888888999999999999988554 66677788888999999999999
Q ss_pred HHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 010830 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI 318 (499)
Q Consensus 273 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 318 (499)
|...++.....+. ++....-..|+.-...|+.+.+.+.=.++.+.
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999988887765 78888888888888888888887776666664
No 76
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=2.1e-07 Score=82.94 Aligned_cols=266 Identities=12% Similarity=0.059 Sum_probs=134.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHH-HHccCCchHHHHHHHHHHhccCCCCHHHHHHH
Q 010830 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA-ICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223 (499)
Q Consensus 145 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 223 (499)
.++.....+.+.+...|+.++|...|+..... .|+..+---+-.. +.+. |+.+....+...+-....-+..-|..-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~e-g~~e~~~~L~~~Lf~~~~~ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQE-GGCEQDSALMDYLFAKVKYTASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhc-cCHhhHHHHHHHHHhhhhcchhhhhhh
Confidence 44555556666666666666666666655432 2322221111111 1223 555555555444433333333334344
Q ss_pred HHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcC
Q 010830 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303 (499)
Q Consensus 224 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 303 (499)
+......++++.|+.+-++.. ...|.+...|-.-...+...++.++|.-.|+..+... +-+...|..++.+|...|
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I---~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCI---DSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQK 382 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHh---ccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhc
Confidence 444444555666665555553 2344455455544555666666666666666554432 124456666666666666
Q ss_pred CHhHHHHHHHHHHhcCCCCCCCHhHHHHHH-HHHH-cCCChHHHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHhHH
Q 010830 304 DSTHAVQLWDIMVGIGFNLMPNLIMYNAVI-GLLC-NNDDVDNVFRFFDQMVFHGAFPDS-LTYNMIFECLIKNKRVHEV 380 (499)
Q Consensus 304 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a 380 (499)
++.+|..+-....+. ++.+..+.+.+. ..+. ...--++|.++++.-.+ +.|+- ...+.+...|...|..+.+
T Consensus 383 ~~kEA~~~An~~~~~---~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~ 457 (564)
T KOG1174|consen 383 RFKEANALANWTIRL---FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDI 457 (564)
T ss_pred hHHHHHHHHHHHHHH---hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchH
Confidence 666666555544433 233444444331 2221 12224556666655544 33443 2334444555566666666
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 010830 381 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 424 (499)
Q Consensus 381 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 424 (499)
+.++++.+.. .||....+.|.+.+...+.+++|.+.|....+
T Consensus 458 i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 458 IKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 6666665552 35556666666666666666666666665554
No 77
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.14 E-value=8.7e-08 Score=87.17 Aligned_cols=188 Identities=14% Similarity=0.041 Sum_probs=124.2
Q ss_pred hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010830 90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS 169 (499)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 169 (499)
...|+.+.|...|+.+.+..+.+...|+.+...+...|++++|.+.|+...+.++.+..+|..+...+...|++++|.+.
T Consensus 75 ~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~ 154 (296)
T PRK11189 75 DSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDD 154 (296)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 45678888888888887777777888888888888888888888888888888777777888888888888888888888
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcc--
Q 010830 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF-- 247 (499)
Q Consensus 170 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-- 247 (499)
|+...+. .|+..........+... ++.++|...|++......++...+ .+. ....|+...+ +.+..+.+..
T Consensus 155 ~~~al~~--~P~~~~~~~~~~l~~~~-~~~~~A~~~l~~~~~~~~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~ 227 (296)
T PRK11189 155 LLAFYQD--DPNDPYRALWLYLAESK-LDPKQAKENLKQRYEKLDKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATD 227 (296)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHcc-CCHHHHHHHHHHHHhhCCccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCC
Confidence 8887765 44433222222223334 778888888866544333333322 222 2234554443 2444443211
Q ss_pred --CCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 010830 248 --EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284 (499)
Q Consensus 248 --~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 284 (499)
.+.|.....|..+...+.+.|++++|+..|++..+.+
T Consensus 228 ~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 228 NTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 1122234567777888888888888888888777655
No 78
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=9.9e-07 Score=78.78 Aligned_cols=289 Identities=11% Similarity=0.064 Sum_probs=200.0
Q ss_pred cCChhHHHHHHHHHHhCC-CCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010830 160 AGKYDEAVMSFDVMSMHG-VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANK 238 (499)
Q Consensus 160 ~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 238 (499)
.++...|...+-.+.... +.-|+.....+-..+... |+.+.|...|++.....+.+........-.+.+.|+++....
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~-Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYN-GDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhh-cCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHH
Confidence 445555555554444332 344566677788888888 999999999998876544455444445555677888888888
Q ss_pred HHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 010830 239 TFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI 318 (499)
Q Consensus 239 ~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 318 (499)
+...+... .-.+...|-.-.......++++.|+.+-++..+.. .-+...|-.--..+...|+.++|.--|+..+..
T Consensus 288 L~~~Lf~~---~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L 363 (564)
T KOG1174|consen 288 LMDYLFAK---VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQML 363 (564)
T ss_pred HHHHHHhh---hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence 87777443 21134456666666777788999998888776644 123344444456677889999999889888875
Q ss_pred CCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHH-HHHH-hcCCHhHHHHHHHHHHHCCCCCC-
Q 010830 319 GFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIF-ECLI-KNKRVHEVEKFFHEMIKNEWQPT- 395 (499)
Q Consensus 319 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~~~~-~~g~~~~a~~~~~~~~~~~~~p~- 395 (499)
. +-+...|.-|+..|...|.+.+|..+-+...+. +..+..+...+. ..|. ....-++|.++++.-++.. |+
T Consensus 364 a---p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~--P~Y 437 (564)
T KOG1174|consen 364 A---PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN--PIY 437 (564)
T ss_pred c---hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC--Ccc
Confidence 3 457889999999999999998888776655442 223444544442 2222 2233477888888776643 44
Q ss_pred hhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 010830 396 PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461 (499)
Q Consensus 396 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 461 (499)
....+.+...|...|..+.+..+++.... ..||....+.|.+.+...+.+++|.+.|...+..+
T Consensus 438 ~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 438 TPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 33456677778888999999999988776 56888888889899988999999999888887553
No 79
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.13 E-value=1.3e-07 Score=85.96 Aligned_cols=96 Identities=14% Similarity=-0.050 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 010830 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDI 298 (499)
Q Consensus 219 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 298 (499)
.|..+...|...|+.++|...|++..+ ..|++...|+.+...+...|++++|...|++..+.. +-+..++..+..+
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~---l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~ 141 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALA---LRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 355555555555555555555555533 245555555555555555555555555555554432 1123344444444
Q ss_pred HHHcCCHhHHHHHHHHHHhc
Q 010830 299 LVKLNDSTHAVQLWDIMVGI 318 (499)
Q Consensus 299 ~~~~~~~~~a~~~~~~~~~~ 318 (499)
+...|++++|.+.++...+.
T Consensus 142 l~~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQD 161 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHh
Confidence 55555555555555555543
No 80
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.12 E-value=9.4e-07 Score=83.45 Aligned_cols=306 Identities=10% Similarity=-0.002 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCcCHHHHHHHHH-HHHccCCchHHHHHHHHHHhccCCCCHHHHHHHH
Q 010830 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHG-VEQDVVAVNSLLS-AICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224 (499)
Q Consensus 147 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll 224 (499)
...|..+...+...|+.+.+.+.+....+.. ...+......+-. .+... |++++|..++++.....+.+...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~-g~~~~A~~~~~~~l~~~P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIA-GDLPKALALLEQLLDDYPRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCcHHHHHH-h
Confidence 4466666777777777777766666654332 1223222222222 22334 77778877777766655555545442 2
Q ss_pred HHHH----hcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 010830 225 EGWE----KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV 300 (499)
Q Consensus 225 ~~~~----~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 300 (499)
..+. ..+..+.+.+.+... ....|........+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~ 159 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLW---APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLE 159 (355)
T ss_pred HHHHHhcccccCchhHHHHHhcc---CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 2222 234444455444442 23345444455556667777777777777777777654 233455666677777
Q ss_pred HcCCHhHHHHHHHHHHhcCCCCCCCH--hHHHHHHHHHHcCCChHHHHHHHHHHHHCCC-CCCHHhH-H--HHHHHHHhc
Q 010830 301 KLNDSTHAVQLWDIMVGIGFNLMPNL--IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGA-FPDSLTY-N--MIFECLIKN 374 (499)
Q Consensus 301 ~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~-~--~ll~~~~~~ 374 (499)
..|++++|...+++..+... ..++. ..|..+...+...|++++|..++++...... .+..... + .++.-+...
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~-~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWD-CSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELA 238 (355)
T ss_pred HcCCHHHHHHHHHhhhhccC-CCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhc
Confidence 77777777777777666430 01222 2344566677777777777777777653211 1111111 1 222223333
Q ss_pred CCHhHHHHH--HHHHHHCCCCCC--hhhHHHHHHHHhccCChhHHHHHHHHHHHCCCC------ChHHHHHHHH--HHHH
Q 010830 375 KRVHEVEKF--FHEMIKNEWQPT--PLNCATAITMLLDADEPEIAIEIWNYILENGIL------PLEASANELL--VGLR 442 (499)
Q Consensus 375 g~~~~a~~~--~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~------p~~~~~~~ll--~~~~ 442 (499)
|..+.+.+. +........... .........++...|+.+.|..+++.+...... ....+-..++ .++.
T Consensus 239 g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~ 318 (355)
T cd05804 239 GHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAF 318 (355)
T ss_pred CCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHH
Confidence 433333222 111111110101 111123445556667777777777766542211 0011111222 2244
Q ss_pred hCCChHHHHHHHHHHHH
Q 010830 443 NLGRLSDVRRFAEEMLN 459 (499)
Q Consensus 443 ~~g~~~~a~~~~~~m~~ 459 (499)
..|++++|.+.+.+...
T Consensus 319 ~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 319 AEGNYATALELLGPVRD 335 (355)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66777777777766654
No 81
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.10 E-value=1.1e-05 Score=76.31 Aligned_cols=322 Identities=11% Similarity=0.107 Sum_probs=164.7
Q ss_pred CCchhHHHHHHHhcCCCCC--CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 010830 93 DSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSF 170 (499)
Q Consensus 93 ~~~~~a~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 170 (499)
++.......|+.+.+..+. ....|...+......|-++-+..+|++..+. ++..-+..|..+++.+++++|.+.+
T Consensus 116 ~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~---~P~~~eeyie~L~~~d~~~eaa~~l 192 (835)
T KOG2047|consen 116 GLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV---APEAREEYIEYLAKSDRLDEAAQRL 192 (835)
T ss_pred chHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc---CHHHHHHHHHHHHhccchHHHHHHH
Confidence 3444455555554442222 2345666666666666666666666666555 3333555566666667777777666
Q ss_pred HHHHhCC------CCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccC--CCC--HHHHHHHHHHHHhcCCHHHHHHHH
Q 010830 171 DVMSMHG------VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV--DPD--GDSFAILLEGWEKEGNVEEANKTF 240 (499)
Q Consensus 171 ~~m~~~g------~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~ll~~~~~~g~~~~a~~~~ 240 (499)
...+... .+-+-..|+-+-...++. -+.-..+.+=.-++.|+ -+| ...|++|.+.|.+.|.+++|..+|
T Consensus 193 a~vln~d~f~sk~gkSn~qlw~elcdlis~~-p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvy 271 (835)
T KOG2047|consen 193 ATVLNQDEFVSKKGKSNHQLWLELCDLISQN-PDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVY 271 (835)
T ss_pred HHhcCchhhhhhcccchhhHHHHHHHHHHhC-cchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 6664321 123344455555555544 22222222222222221 123 345777888888888888888888
Q ss_pred HHHhHccCCCCchHHhHHHHHHHHhcCCC----------------------HHHHHHHHHHHhhCC-C----------CC
Q 010830 241 GEMVERFEWNPEHVLAYETFLITLIRGKQ----------------------VDEALKFLRVMKGEN-C----------FP 287 (499)
Q Consensus 241 ~~~~~~~~~~p~~~~~~~~li~~~~~~~~----------------------~~~a~~~~~~m~~~~-~----------~p 287 (499)
++..... . ++.-|+.+.++|..-.. ++-.+.-|+.+.... + ..
T Consensus 272 eeai~~v---~-tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~ 347 (835)
T KOG2047|consen 272 EEAIQTV---M-TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPH 347 (835)
T ss_pred HHHHHhh---e-ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCc
Confidence 7776541 1 23334445455443211 111122222222111 0 00
Q ss_pred CHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCC------CHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC-
Q 010830 288 TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP------NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPD- 360 (499)
Q Consensus 288 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~- 360 (499)
++..|..-+ -...|+..+-...|.+..+. +.| -...|..+.+.|-..|+++.|..+|++..+-..+--
T Consensus 348 nV~eW~kRV--~l~e~~~~~~i~tyteAv~~---vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~ 422 (835)
T KOG2047|consen 348 NVEEWHKRV--KLYEGNAAEQINTYTEAVKT---VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVE 422 (835)
T ss_pred cHHHHHhhh--hhhcCChHHHHHHHHHHHHc---cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchH
Confidence 111111111 11234555556666666554 223 234677788888888888888888888876432211
Q ss_pred --HHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-----------------ChhhHHHHHHHHhccCChhHHHHHHHH
Q 010830 361 --SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP-----------------TPLNCATAITMLLDADEPEIAIEIWNY 421 (499)
Q Consensus 361 --~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p-----------------~~~~~~~li~~~~~~g~~~~a~~~~~~ 421 (499)
..+|..-...-.++.+++.|+++++.....--.| +...|+.+++.--..|-++....+++.
T Consensus 423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdr 502 (835)
T KOG2047|consen 423 DLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDR 502 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 2345554555556777888888777765421111 122344444444455667777777777
Q ss_pred HHHCCC
Q 010830 422 ILENGI 427 (499)
Q Consensus 422 m~~~~~ 427 (499)
+.+..+
T Consensus 503 iidLri 508 (835)
T KOG2047|consen 503 IIDLRI 508 (835)
T ss_pred HHHHhc
Confidence 765443
No 82
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=3.3e-07 Score=80.13 Aligned_cols=330 Identities=11% Similarity=0.076 Sum_probs=195.5
Q ss_pred CCHHHHHHH-HHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 010830 111 LSPYAWNLM-VDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLL 189 (499)
Q Consensus 111 ~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 189 (499)
|+....+.| ....-+.++-++....-+.+.+. ..---+|.......-.+.+|++++.+.... .|+-...|.-+
T Consensus 118 ~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ 191 (557)
T KOG3785|consen 118 PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYM 191 (557)
T ss_pred CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHH
Confidence 333344444 44455556666665555555432 122344555555556789999999998765 56666666655
Q ss_pred HHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc--CCH---------------------------------H
Q 010830 190 SAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE--GNV---------------------------------E 234 (499)
Q Consensus 190 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~--g~~---------------------------------~ 234 (499)
..|.-..+-++.+.++++...+..+.+....|..+....+. |+. +
T Consensus 192 ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngE 271 (557)
T KOG3785|consen 192 ALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGE 271 (557)
T ss_pred HHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCc
Confidence 54443327778888888777666666666555544433332 111 2
Q ss_pred HHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH-----HcCCHhHHH
Q 010830 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV-----KLNDSTHAV 309 (499)
Q Consensus 235 ~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-----~~~~~~~a~ 309 (499)
.|++++-.+. .+.| ..--.|+-.|.+.+++++|..+.+++.- ..|-......+..+.. ....++.|.
T Consensus 272 gALqVLP~L~---~~IP---EARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAq 343 (557)
T KOG3785|consen 272 GALQVLPSLM---KHIP---EARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQ 343 (557)
T ss_pred cHHHhchHHH---hhCh---HhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHH
Confidence 2333332221 1223 2344566678889999999988876543 2344444433333221 112356677
Q ss_pred HHHHHHHhcCCCCCCCHh-HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010830 310 QLWDIMVGIGFNLMPNLI-MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388 (499)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 388 (499)
+.|+..-..+ ..-|.. --.++...+.-..++++++-.++.....-..-|...| .+.++++..|.+.+|+++|-.+.
T Consensus 344 qffqlVG~Sa--~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is 420 (557)
T KOG3785|consen 344 QFFQLVGESA--LECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRIS 420 (557)
T ss_pred HHHHHhcccc--cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhc
Confidence 7777766665 333322 2344455555566788888888888775333344444 46788888999999999998776
Q ss_pred HCCCCCChhhH-HHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHH-HHHHhCCChHHHHHHHHHHHHcC
Q 010830 389 KNEWQPTPLNC-ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL-VGLRNLGRLSDVRRFAEEMLNRR 461 (499)
Q Consensus 389 ~~~~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~m~~~~ 461 (499)
...++ |..+| ..|.++|.+++.++.|+.++-++ +-..+..+.-.+| +-|.+++.+--|.+.|+++...+
T Consensus 421 ~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 421 GPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred Chhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 55554 44455 45667888999999887765544 3233333333333 55778888888888887776543
No 83
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.07 E-value=2.5e-07 Score=76.20 Aligned_cols=194 Identities=9% Similarity=0.031 Sum_probs=115.6
Q ss_pred HHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcC
Q 010830 188 LLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267 (499)
Q Consensus 188 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~ 267 (499)
|--.|... |+...|.+-+++..+..+.+..+|..+...|.+.|+.+.|.+-|++.. .+.|++..+.|.....+|..
T Consensus 41 Lal~YL~~-gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 41 LALGYLQQ-GDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHC-CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhHHHHhC
Confidence 34455555 666666666666665555666666666666666666666666666663 33566666666666666666
Q ss_pred CCHHHHHHHHHHHhhCC-CCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHH
Q 010830 268 KQVDEALKFLRVMKGEN-CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346 (499)
Q Consensus 268 ~~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 346 (499)
|++++|...|++....- ..--..+|..+.-+..+.|+.+.|...|++.++.. +-...+.-.+.....+.|++-.|.
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d---p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD---PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC---cCCChHHHHHHHHHHhcccchHHH
Confidence 66666666666655432 11223456666666666666666666666666653 223344555556666666666666
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010830 347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389 (499)
Q Consensus 347 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 389 (499)
..++.....+. ++..+....|+.--..|+.+.+-++=..+.+
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 66666655544 5555555555555566666555555444443
No 84
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.07 E-value=7.8e-06 Score=78.98 Aligned_cols=376 Identities=14% Similarity=0.062 Sum_probs=253.3
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCcCHHHHH
Q 010830 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG-VEQDVVAVN 186 (499)
Q Consensus 108 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~ 186 (499)
...-|+..|..+.-++.+.|+++.+.+.|++....-......|..+...|...|.-..|..+++.-.... -.+|...+-
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4556788899999999999999999999999887766777889999999999999999999998765442 233455555
Q ss_pred HHHHHHHccCCchHHHHHHHHHHhc--c---CCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHhHccCCC
Q 010830 187 SLLSAICRQENQTSRALEFLNRVKK--I---VDPDGDSFAILLEGWEKE-----------GNVEEANKTFGEMVERFEWN 250 (499)
Q Consensus 187 ~ll~~~~~~~~~~~~a~~~~~~~~~--~---~~~~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~~~~ 250 (499)
..-..|.+..+..++++.+-.++.+ + .......|..+.-+|... ....++.+.+++..+. .
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~---d 474 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF---D 474 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc---C
Confidence 5556677666778887777666543 1 112233444444444321 2234677777777654 4
Q ss_pred CchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCC-----
Q 010830 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN----- 325 (499)
Q Consensus 251 p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----- 325 (499)
|.|+.....+.--|...++++.|.+..++..+.+-.-+...|..+.-.+...+++.+|+.+.+.....- ..|
T Consensus 475 ~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~---~~N~~l~~ 551 (799)
T KOG4162|consen 475 PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF---GDNHVLMD 551 (799)
T ss_pred CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh---hhhhhhch
Confidence 445555555666777889999999999999887666788889888888999999999999998776542 111
Q ss_pred ---------------HhHHHHHHHHHHcC-----------------------CChHHHHHHHHHHH--------HCC---
Q 010830 326 ---------------LIMYNAVIGLLCNN-----------------------DDVDNVFRFFDQMV--------FHG--- 356 (499)
Q Consensus 326 ---------------~~~~~~li~~~~~~-----------------------~~~~~a~~~~~~m~--------~~g--- 356 (499)
..|...++..+-.. ++..++.+....+. ..|
T Consensus 552 ~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~ 631 (799)
T KOG4162|consen 552 GKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSEL 631 (799)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccc
Confidence 11222222221100 01111111111110 001
Q ss_pred ------CC--CCH------HhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHH
Q 010830 357 ------AF--PDS------LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 422 (499)
Q Consensus 357 ------~~--p~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 422 (499)
+. |+. ..|......+.+.+..++|...+.+..+.. .-....|......+...|..++|.+.|...
T Consensus 632 ~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~A 710 (799)
T KOG4162|consen 632 KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVA 710 (799)
T ss_pred ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence 00 110 124455556777788888888887776543 334555666666777889999999999887
Q ss_pred HHCCCCChHHHHHHHHHHHHhCCChHHHHH--HHHHHHHcCCccCHHHHHHHHHHHHhcccc--hHHHHHHHHH
Q 010830 423 LENGILPLEASANELLVGLRNLGRLSDVRR--FAEEMLNRRILIYEVTMHKLKKAFYNESRS--MRDIFDSLER 492 (499)
Q Consensus 423 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~--~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~--a~~~~~~~~~ 492 (499)
...+ +-++.+..++...+.+.|+..-|.. ++.++.+.+ .-+...|..+-..+-+.|+. |.+.|+...+
T Consensus 711 l~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 711 LALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 7633 2345677888889999998777777 999999876 34788999999999999998 7777776554
No 85
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.06 E-value=5e-06 Score=77.00 Aligned_cols=376 Identities=10% Similarity=0.102 Sum_probs=218.2
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHH
Q 010830 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS 187 (499)
Q Consensus 108 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 187 (499)
..+.|..+|+.||+-+... ..+++++.++++...-+-+...|..-|..-.+..+++..+.+|.+.... .-+...|..
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~l 91 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKL 91 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHH
Confidence 4778889999999877666 8899999999998887778888999999999999999999999887765 445666666
Q ss_pred HHHHHHccCCchHHHHHH----HHHHhc--cCCC-CHHHHHHHHHH---------HHhcCCHHHHHHHHHHHhHccCCCC
Q 010830 188 LLSAICRQENQTSRALEF----LNRVKK--IVDP-DGDSFAILLEG---------WEKEGNVEEANKTFGEMVERFEWNP 251 (499)
Q Consensus 188 ll~~~~~~~~~~~~a~~~----~~~~~~--~~~~-~~~~~~~ll~~---------~~~~g~~~~a~~~~~~~~~~~~~~p 251 (499)
.|.-.-+..++...+... |+-... |+.+ +...|+..+.. |....+++...++++++... .+.-
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t-Pm~n 170 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT-PMHN 170 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC-cccc
Confidence 666544443444442222 222222 3222 22233333322 33344555666677666442 1110
Q ss_pred -----chHHhHHHHHHHH-------hcCCCHHHHHHHHHHHhh--CCCCCCH----------------------------
Q 010830 252 -----EHVLAYETFLITL-------IRGKQVDEALKFLRVMKG--ENCFPTL---------------------------- 289 (499)
Q Consensus 252 -----~~~~~~~~li~~~-------~~~~~~~~a~~~~~~m~~--~~~~p~~---------------------------- 289 (499)
.|-..|..=|+.. -+...+..|.++++++.. .|+....
T Consensus 171 lEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksN 250 (656)
T KOG1914|consen 171 LEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSN 250 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Confidence 0111111111111 111234445555544432 2211100
Q ss_pred ---------------hhHHHHH---------------------HHHHHcCC-------HhHHHHHHHHHHhcCCCCCCCH
Q 010830 290 ---------------KFFSNAL---------------------DILVKLND-------STHAVQLWDIMVGIGFNLMPNL 326 (499)
Q Consensus 290 ---------------~~~~~li---------------------~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~ 326 (499)
.+|...+ +.+...|+ .+++..+++..+..- ...+.
T Consensus 251 pL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l--~~~~~ 328 (656)
T KOG1914|consen 251 PLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGL--LKENK 328 (656)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHH--HHHHH
Confidence 1111111 11112222 344445555444332 22233
Q ss_pred hHHHHHHHHHHcC---CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-ChhhHHHH
Q 010830 327 IMYNAVIGLLCNN---DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP-TPLNCATA 402 (499)
Q Consensus 327 ~~~~~li~~~~~~---~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l 402 (499)
.+|..+...--.. ...+.....++++...-..--..+|...|+.-.+...++.|..+|.++.+.+..+ +...++++
T Consensus 329 ~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~ 408 (656)
T KOG1914|consen 329 LLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAAL 408 (656)
T ss_pred HHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHH
Confidence 3343333221111 1255666666666653222223567788888888888899999999998886666 67777888
Q ss_pred HHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCH--HHHHHHHHHHHhcc
Q 010830 403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYE--VTMHKLKKAFYNES 480 (499)
Q Consensus 403 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g 480 (499)
+..+|. ++.+-|.++|+.-.+. +.-++..-...+.-+...++-..|..+|++....++.||. ..|..+|..=..-|
T Consensus 409 mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vG 486 (656)
T KOG1914|consen 409 MEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVG 486 (656)
T ss_pred HHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcc
Confidence 887764 7888899999865542 2233344556677778888888899999998888666554 67888888888888
Q ss_pred cc--hHHHHHHHH
Q 010830 481 RS--MRDIFDSLE 491 (499)
Q Consensus 481 ~~--a~~~~~~~~ 491 (499)
+. +.++-+++.
T Consensus 487 dL~si~~lekR~~ 499 (656)
T KOG1914|consen 487 DLNSILKLEKRRF 499 (656)
T ss_pred cHHHHHHHHHHHH
Confidence 87 444444433
No 86
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.96 E-value=1.3e-07 Score=84.76 Aligned_cols=151 Identities=21% Similarity=0.268 Sum_probs=77.1
Q ss_pred HHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHH---HHHHHHHHc
Q 010830 262 ITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY---NAVIGLLCN 338 (499)
Q Consensus 262 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~~li~~~~~ 338 (499)
..+...|++++|++++..- .+.......+..|.+.++++.|.+.++.|.+.+ .|.... .+.+..+..
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~----eD~~l~qLa~awv~l~~g 179 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID----EDSILTQLAEAWVNLATG 179 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS----CCHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CcHHHHHHHHHHHHHHhC
Confidence 4445556666666555421 234444555566666666666666666665533 232211 222222222
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCh-hHHHH
Q 010830 339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP-EIAIE 417 (499)
Q Consensus 339 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~ 417 (499)
.+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+..+... -+..+...++-+....|+. +.+.+
T Consensus 180 ~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~ 257 (290)
T PF04733_consen 180 GEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAER 257 (290)
T ss_dssp TTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred chhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHHH
Confidence 34566666666666543 445666666666666666666666666666554431 2344444555555555555 44555
Q ss_pred HHHHHHH
Q 010830 418 IWNYILE 424 (499)
Q Consensus 418 ~~~~m~~ 424 (499)
.+..+..
T Consensus 258 ~l~qL~~ 264 (290)
T PF04733_consen 258 YLSQLKQ 264 (290)
T ss_dssp HHHHCHH
T ss_pred HHHHHHH
Confidence 5555554
No 87
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.96 E-value=2e-05 Score=69.01 Aligned_cols=192 Identities=10% Similarity=0.109 Sum_probs=99.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHc
Q 010830 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302 (499)
Q Consensus 223 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 302 (499)
.+..+.-.|+...|+.....+.+ +.|=|...|..-..+|...|++..|+.-++..-+..- -+..++--+-..+...
T Consensus 161 ql~s~~~~GD~~~ai~~i~~llE---i~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~v 236 (504)
T KOG0624|consen 161 QLKSASGSGDCQNAIEMITHLLE---IQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTV 236 (504)
T ss_pred HHHHHhcCCchhhHHHHHHHHHh---cCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhh
Confidence 34445566777777777777744 3554666666777777777777777766655444332 2344444555666677
Q ss_pred CCHhHHHHHHHHHHhcCCCCCCCHhHHHHH-------------HHHHHcCCChHHHHHHHHHHHHCCCCCCHH---hHHH
Q 010830 303 NDSTHAVQLWDIMVGIGFNLMPNLIMYNAV-------------IGLLCNNDDVDNVFRFFDQMVFHGAFPDSL---TYNM 366 (499)
Q Consensus 303 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l-------------i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~ 366 (499)
|+.+.++...++.++.+ ||-..+-.. +......+++.++++-.+...+........ .+..
T Consensus 237 gd~~~sL~~iRECLKld----pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~ 312 (504)
T KOG0624|consen 237 GDAENSLKEIRECLKLD----PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRV 312 (504)
T ss_pred hhHHHHHHHHHHHHccC----cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeehe
Confidence 77777777777776643 443322111 011123344444444444444432111111 1222
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 010830 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPT-PLNCATAITMLLDADEPEIAIEIWNYILE 424 (499)
Q Consensus 367 ll~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 424 (499)
+-.++...|++.+|++.-.+.++.. |+ ..++.--..+|.....++.|+.=|+...+
T Consensus 313 ~c~C~~~d~~~~eAiqqC~evL~~d--~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 313 LCTCYREDEQFGEAIQQCKEVLDID--PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred eeecccccCCHHHHHHHHHHHHhcC--chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 3334444555555555555555422 22 44444445555555555555555555554
No 88
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=1.1e-05 Score=69.26 Aligned_cols=318 Identities=14% Similarity=0.046 Sum_probs=200.5
Q ss_pred CCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010830 93 DSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172 (499)
Q Consensus 93 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 172 (499)
.+..+|.++.....+..+.+....+.+..+|-...++..|-+.|+++....+.-..-----.+.+.+.+.+.+|+++...
T Consensus 24 ~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~ 103 (459)
T KOG4340|consen 24 ARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFL 103 (459)
T ss_pred hhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 45667777776665656668888888989999999999999999998876542222222234567778899999999988
Q ss_pred HHhCCCCcCHHHHHHHHHH--HHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCC
Q 010830 173 MSMHGVEQDVVAVNSLLSA--ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250 (499)
Q Consensus 173 m~~~g~~p~~~~~~~ll~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 250 (499)
|... ++...-..-+.+ .... +++..+..+.++... ..+..+.+...-...+.|+++.|.+-|+...+-.|..
T Consensus 104 ~~D~---~~L~~~~lqLqaAIkYse-~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq 177 (459)
T KOG4340|consen 104 LLDN---PALHSRVLQLQAAIKYSE-GDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ 177 (459)
T ss_pred hcCC---HHHHHHHHHHHHHHhccc-ccCcchHHHHHhccC--CCccchhccchheeeccccHHHHHHHHHHHHhhcCCC
Confidence 8642 332222222222 2234 888888888888763 2344555555556678999999999999998877888
Q ss_pred CchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCC-------------CH---------------hhHHHHHHHHHHc
Q 010830 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP-------------TL---------------KFFSNALDILVKL 302 (499)
Q Consensus 251 p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-------------~~---------------~~~~~li~~~~~~ 302 (499)
| - ..||..+. ..+.|+++.|++...++.++|++- |. ..||.-...+.+.
T Consensus 178 p-l-lAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~ 254 (459)
T KOG4340|consen 178 P-L-LAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQL 254 (459)
T ss_pred c-h-hHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhc
Confidence 7 3 46776554 456689999999999998877542 11 1122222334567
Q ss_pred CCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHH
Q 010830 303 NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382 (499)
Q Consensus 303 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 382 (499)
|+.+.|.+-+..|-.+.. ...|.+|...+.-.-. .+++.+..+-+.-+...+. -...||..++-.||++.-++.|-+
T Consensus 255 ~n~eAA~eaLtDmPPRaE-~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAAD 331 (459)
T KOG4340|consen 255 RNYEAAQEALTDMPPRAE-EELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAAD 331 (459)
T ss_pred ccHHHHHHHhhcCCCccc-ccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHH
Confidence 788888877777654321 2346666555433222 3344444555555555433 234678888888999988888888
Q ss_pred HHHHHHHCCC-CCChhhHHHHHHHHh-ccCChhHHHHHHHHHH
Q 010830 383 FFHEMIKNEW-QPTPLNCATAITMLL-DADEPEIAIEIWNYIL 423 (499)
Q Consensus 383 ~~~~~~~~~~-~p~~~~~~~li~~~~-~~g~~~~a~~~~~~m~ 423 (499)
++.+--.... -.+...|+. +.++. ..-..+++.+-++.+.
T Consensus 332 vLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 332 VLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHHHHHHHHHH
Confidence 7765322211 123333443 33333 3356666666555443
No 89
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.91 E-value=5.5e-05 Score=73.37 Aligned_cols=378 Identities=12% Similarity=0.032 Sum_probs=251.3
Q ss_pred CCCCHHHHHHHHH--hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCC--CCCHHHHHH
Q 010830 77 IIPTPDLVHEVLQ--LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG--VLSLPTFAS 152 (499)
Q Consensus 77 ~~~~~~~~~~~l~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~ 152 (499)
+.-++..+..+-- .+.|+...+-+.|+......--....|+.+-..+...|.-..|+.+.+.-.... +++...+-.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 3445555554433 567899999999998877777778899999999999999999999998887766 556666666
Q ss_pred HHHHHHh-cCChhHHHHHHHHHHhC--CC--CcCHHHHHHHHHHHHcc---C-------CchHHHHHHHHHHhccCCCCH
Q 010830 153 IFDSYCG-AGKYDEAVMSFDVMSMH--GV--EQDVVAVNSLLSAICRQ---E-------NQTSRALEFLNRVKKIVDPDG 217 (499)
Q Consensus 153 li~~~~~-~g~~~~A~~~~~~m~~~--g~--~p~~~~~~~ll~~~~~~---~-------~~~~~a~~~~~~~~~~~~~~~ 217 (499)
.-..|.+ .+.++++++.-.+.... |. ......|..+--+|... . ....++.+.+++..+..+.|.
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 6666654 46777777777666551 11 12233333333333221 0 123456666666655444555
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhh-CCCCC---------
Q 010830 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG-ENCFP--------- 287 (499)
Q Consensus 218 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~p--------- 287 (499)
.+...+.--|+..++++.|.+...+..+- + .-++...|..+.-.+...+++.+|+.+.+.... .|..-
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l-~-~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALAL-N-RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI 556 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHh-c-CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence 55555566688889999999999998663 2 223778999999999999999999999987554 33100
Q ss_pred ---------CHhhHHHHHHHHHH---------c--------------CCHhHHHHHHHHHH--------hcCC-------
Q 010830 288 ---------TLKFFSNALDILVK---------L--------------NDSTHAVQLWDIMV--------GIGF------- 320 (499)
Q Consensus 288 ---------~~~~~~~li~~~~~---------~--------------~~~~~a~~~~~~~~--------~~~~------- 320 (499)
...|+..++..+-. . ++..++......+. ..++
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s 636 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSS 636 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcc
Confidence 01222222222210 0 01111111111110 0110
Q ss_pred CCCC--C------HhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 010830 321 NLMP--N------LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 392 (499)
Q Consensus 321 ~~~~--~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 392 (499)
...| + ...|......+.+.+..++|...+.+.... .......|......+...|..++|.+.|.......
T Consensus 637 ~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld- 714 (799)
T KOG4162|consen 637 TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD- 714 (799)
T ss_pred cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-
Confidence 0111 1 234556667778888888888888777664 23344566666677788899999999999888754
Q ss_pred CC-ChhhHHHHHHHHhccCChhHHHH--HHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 010830 393 QP-TPLNCATAITMLLDADEPEIAIE--IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460 (499)
Q Consensus 393 ~p-~~~~~~~li~~~~~~g~~~~a~~--~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 460 (499)
| +....+++...+.+.|+...|.. ++.++.+.+ ..+...|..+-..+.+.|+.++|.+.|....+.
T Consensus 715 -P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 715 -PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred -CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 4 34567889999999998888888 999999877 457789999999999999999999999987754
No 90
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.90 E-value=6e-05 Score=70.12 Aligned_cols=174 Identities=9% Similarity=0.107 Sum_probs=128.1
Q ss_pred HhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCCHhHHHHH
Q 010830 305 STHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFP-DSLTYNMIFECLIKNKRVHEVEKF 383 (499)
Q Consensus 305 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 383 (499)
.+....++++++..-. ..| ..+|..+|..-.+..-+..|..+|.+..+.+..+ ++..++++|.-+|. ++.+-|.++
T Consensus 347 ~~~~~~~~~~ll~~~~-~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrI 423 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIED-IDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRI 423 (656)
T ss_pred hhhhHHHHHHHHhhhc-cCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHH
Confidence 5566666766665431 233 4567788888888888999999999999988777 77888888887765 677899999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChH--HHHHHHHHHHHhCCChHHHHHHHHHHHHc-
Q 010830 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE--ASANELLVGLRNLGRLSDVRRFAEEMLNR- 460 (499)
Q Consensus 384 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~~~- 460 (499)
|+.=++. +.-+..-....+..+...++-..+..+|+.....++.++. .+|..+|.--..-|+...+.++-+++...
T Consensus 424 FeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af 502 (656)
T KOG1914|consen 424 FELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAF 502 (656)
T ss_pred HHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhc
Confidence 9876654 2234445566777888889999999999999987665544 78999999989999999999998887643
Q ss_pred --CCccCHHHHHHHHHHHHhcccc
Q 010830 461 --RILIYEVTMHKLKKAFYNESRS 482 (499)
Q Consensus 461 --~~~p~~~~~~~ll~~~~~~g~~ 482 (499)
...+...+-..+++-|.-.+..
T Consensus 503 ~~~qe~~~~~~~~~v~RY~~~d~~ 526 (656)
T KOG1914|consen 503 PADQEYEGNETALFVDRYGILDLY 526 (656)
T ss_pred chhhcCCCChHHHHHHHHhhcccc
Confidence 1233334445555555555544
No 91
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.89 E-value=1.9e-07 Score=83.70 Aligned_cols=150 Identities=13% Similarity=0.128 Sum_probs=66.5
Q ss_pred HHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHH---
Q 010830 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK--- 301 (499)
Q Consensus 225 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~--- 301 (499)
..+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.+ .| .+...+..++..
T Consensus 110 ~i~~~~~~~~~AL~~l~~~--------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~ 178 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG--------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLAT 178 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT--------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcc--------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHh
Confidence 3344445555555444322 133344445555555555555555555555432 12 223333333322
Q ss_pred -cCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCH-hH
Q 010830 302 -LNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV-HE 379 (499)
Q Consensus 302 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~ 379 (499)
.+.+.+|..+|+++.+. ..++..+.|.+..++...|++++|.+++.+..+... -+..+...++.+....|+. +.
T Consensus 179 g~e~~~~A~y~f~El~~~---~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~ 254 (290)
T PF04733_consen 179 GGEKYQDAFYIFEELSDK---FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEA 254 (290)
T ss_dssp TTTCCCHHHHHHHHHHCC---S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHH
T ss_pred CchhHHHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhH
Confidence 22355555555554443 234555555555555555555555555555443321 1333444444444444544 34
Q ss_pred HHHHHHHHHH
Q 010830 380 VEKFFHEMIK 389 (499)
Q Consensus 380 a~~~~~~~~~ 389 (499)
+.+++.++..
T Consensus 255 ~~~~l~qL~~ 264 (290)
T PF04733_consen 255 AERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHCHH
T ss_pred HHHHHHHHHH
Confidence 4455555544
No 92
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.88 E-value=3.4e-06 Score=72.17 Aligned_cols=294 Identities=11% Similarity=0.064 Sum_probs=209.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHH-HHHHH
Q 010830 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSL-LSAIC 193 (499)
Q Consensus 115 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~ 193 (499)
-+++.+..+.+..+++.|++++..-.++.+.+......|..+|....++..|-..++.+-.. .|...-|... ...+.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 36677777889999999999999998888878888999999999999999999999999765 5666655533 33455
Q ss_pred ccCCchHHHHHHHHHHhccCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHH
Q 010830 194 RQENQTSRALEFLNRVKKIVDPDGDS--FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD 271 (499)
Q Consensus 194 ~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~ 271 (499)
+. +.+..|+.+...|... ++... ...-.......+++-.+..++++.... + +..+.+.......+.|+++
T Consensus 90 ~A-~i~ADALrV~~~~~D~--~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e-n----~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 90 KA-CIYADALRVAFLLLDN--PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE-N----EADGQINLGCLLYKEGQYE 161 (459)
T ss_pred Hh-cccHHHHHHHHHhcCC--HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC-C----ccchhccchheeeccccHH
Confidence 66 8899999999888753 22222 111122234578888899999888642 1 4556666677778999999
Q ss_pred HHHHHHHHHhhC-CCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCC-----------CH-------------
Q 010830 272 EALKFLRVMKGE-NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP-----------NL------------- 326 (499)
Q Consensus 272 ~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~------------- 326 (499)
.|.+-|+...+- |..| ...|+..+ +..+.|+.+.|.+...+++++|..-.| |+
T Consensus 162 aAvqkFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa 239 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA 239 (459)
T ss_pred HHHHHHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH
Confidence 999999998774 5544 56677655 445678999999999999988722112 11
Q ss_pred --hHHHHHHHHHHcCCChHHHHHHHHHHHHC-CCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHH
Q 010830 327 --IMYNAVIGLLCNNDDVDNVFRFFDQMVFH-GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403 (499)
Q Consensus 327 --~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li 403 (499)
..+|.-...+.+.|+++.|.+-+-.|.-. .-..|++|...+.-.= ..+++.+..+-+.-+..... ....||..++
T Consensus 240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlL 317 (459)
T KOG4340|consen 240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLL 317 (459)
T ss_pred HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHH
Confidence 12232333456788999999988888632 2345677766543221 24556666666777776643 3467899999
Q ss_pred HHHhccCChhHHHHHHHHH
Q 010830 404 TMLLDADEPEIAIEIWNYI 422 (499)
Q Consensus 404 ~~~~~~g~~~~a~~~~~~m 422 (499)
-.||+..-++.|-.++.+-
T Consensus 318 llyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 318 LLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred HHHhhhHHHhHHHHHHhhC
Confidence 9999999888888877643
No 93
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.88 E-value=1.7e-05 Score=84.99 Aligned_cols=339 Identities=10% Similarity=0.050 Sum_probs=185.4
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCC-------CC--HHHHHHHHHH
Q 010830 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD-------PD--GDSFAILLEG 226 (499)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~-------~~--~~~~~~ll~~ 226 (499)
.....|+++.+..+++.+.......+..........+... |+++++..+++....... +. ......+...
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~-g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQ-HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHC-CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 3445667777666666552111111111222223333445 888888888877643211 11 1222233445
Q ss_pred HHhcCCHHHHHHHHHHHhHccCCCCc--hHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC----CC-CCCHhhHHHHHHHH
Q 010830 227 WEKEGNVEEANKTFGEMVERFEWNPE--HVLAYETFLITLIRGKQVDEALKFLRVMKGE----NC-FPTLKFFSNALDIL 299 (499)
Q Consensus 227 ~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~p~~~~~~~li~~~ 299 (499)
+...|++++|...+++..+....... .....+.+...+...|++++|...+++.... |- .....++..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 56788888888888877552111100 1124455666677788888888888776542 11 01122344556667
Q ss_pred HHcCCHhHHHHHHHHHHhc----CCC-CCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHC--CCCC--CHHhHHHHHHH
Q 010830 300 VKLNDSTHAVQLWDIMVGI----GFN-LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH--GAFP--DSLTYNMIFEC 370 (499)
Q Consensus 300 ~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p--~~~~~~~ll~~ 370 (499)
...|+++.|...+++.... +.. .......+..+...+...|++++|...+.+.... ...+ ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 7888888888887776542 100 0112233445556667778888888888776542 1112 12334445556
Q ss_pred HHhcCCHhHHHHHHHHHHHC--CCCCChh--hH--HHHHHHHhccCChhHHHHHHHHHHHCCCCCh---HHHHHHHHHHH
Q 010830 371 LIKNKRVHEVEKFFHEMIKN--EWQPTPL--NC--ATAITMLLDADEPEIAIEIWNYILENGILPL---EASANELLVGL 441 (499)
Q Consensus 371 ~~~~g~~~~a~~~~~~~~~~--~~~p~~~--~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~ 441 (499)
+...|+.++|...++..... ....... .. ...+..+...|+.+.|.+++........... ...+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 67788888888888777542 1111000 00 1112334456788888887765443211111 11133455667
Q ss_pred HhCCChHHHHHHHHHHHHc----CCccC-HHHHHHHHHHHHhcccc--hHHHHHHHHHHHh
Q 010830 442 RNLGRLSDVRRFAEEMLNR----RILIY-EVTMHKLKKAFYNESRS--MRDIFDSLERRCK 495 (499)
Q Consensus 442 ~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~g~~--a~~~~~~~~~~~~ 495 (499)
...|++++|...+++.... |...+ ..+...+-.++.+.|+. |.+.+.+.++...
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 7788888888888877642 22222 23455566667777776 7777776665543
No 94
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=5.8e-05 Score=70.25 Aligned_cols=374 Identities=11% Similarity=0.092 Sum_probs=238.3
Q ss_pred hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010830 90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS 169 (499)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 169 (499)
...|+.+.|...|-.+....++|...|+.-..+|+..|++++|++=-.+-.+..+.-...|+-...++.-.|++++|+.-
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~a 92 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILA 92 (539)
T ss_pred cccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHH
Confidence 45789999999999888878889999999999999999999998877777777766667899999999999999999999
Q ss_pred HHHHHhCCCCcC-HHHHHHHHHHHHccCCchHHHHHHHH------HHhc----cCCCCHHHHHHHHHHHHhc--------
Q 010830 170 FDVMSMHGVEQD-VVAVNSLLSAICRQENQTSRALEFLN------RVKK----IVDPDGDSFAILLEGWEKE-------- 230 (499)
Q Consensus 170 ~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~------~~~~----~~~~~~~~~~~ll~~~~~~-------- 230 (499)
|.+=++. .|+ ...++-+..++... ... .+.|. .+.. ........|..++..+-+.
T Consensus 93 y~~GL~~--d~~n~~L~~gl~~a~~~~---~~~-~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 93 YSEGLEK--DPSNKQLKTGLAQAYLED---YAA-DQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHhhc--CCchHHHHHhHHHhhhHH---HHh-hhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 9987765 444 44455555554111 100 11111 1100 0000111222222222111
Q ss_pred --CCHHHHHHHHHHHh-----H------ccCCCC------------c---------hHHhHHHHHHHHhcCCCHHHHHHH
Q 010830 231 --GNVEEANKTFGEMV-----E------RFEWNP------------E---------HVLAYETFLITLIRGKQVDEALKF 276 (499)
Q Consensus 231 --g~~~~a~~~~~~~~-----~------~~~~~p------------~---------~~~~~~~li~~~~~~~~~~~a~~~ 276 (499)
..+..+.-.+.... . ..+..| + -..-...+.+...+..++..|++-
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 01111111111000 0 001111 0 112355677788888889999998
Q ss_pred HHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHH-------HHHHHHcCCChHHHHHHH
Q 010830 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA-------VIGLLCNNDDVDNVFRFF 349 (499)
Q Consensus 277 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-------li~~~~~~~~~~~a~~~~ 349 (499)
+....+.. -+..-++..-.+|...|....+...-....+.|. -...-|+. +..+|.+.++++.++..|
T Consensus 247 y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr---e~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 247 YAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR---ELRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH---HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 88877765 4555566667778888888877777766666652 12222332 333566677888999998
Q ss_pred HHHHHCCCCCCHHhH-------------------------HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 010830 350 DQMVFHGAFPDSLTY-------------------------NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 404 (499)
Q Consensus 350 ~~m~~~g~~p~~~~~-------------------------~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 404 (499)
.+....-..|+...= ..-...+.+.|++..|...|.++++.. +-|...|....-
T Consensus 322 ~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAa 400 (539)
T KOG0548|consen 322 QKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAA 400 (539)
T ss_pred HHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHH
Confidence 887765445544331 112344667899999999999999876 457888999999
Q ss_pred HHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHh
Q 010830 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 478 (499)
Q Consensus 405 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 478 (499)
+|.+.|.+..|..=.+..++.. ++....|.-=..++.-..++++|.+.|++.++.+ |+..-+..-+.-|..
T Consensus 401 c~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 401 CYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHHH
Confidence 9999999999988877777643 2223333333344445578899999999888765 555555555555554
No 95
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.84 E-value=4.5e-06 Score=85.49 Aligned_cols=227 Identities=9% Similarity=0.080 Sum_probs=142.6
Q ss_pred CCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC-CCCCC---HhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCC
Q 010830 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-NCFPT---LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN 325 (499)
Q Consensus 250 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 325 (499)
.|++...|-..|......++.++|.++.++.... ++.-. ...|.++++.-..-|.-+...++|+++.+.. ..
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc----d~ 1529 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC----DA 1529 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc----ch
Confidence 4555666666666666777777777776665542 11111 2345555555555566666777777776643 23
Q ss_pred HhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC-CChhhHHHHHH
Q 010830 326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ-PTPLNCATAIT 404 (499)
Q Consensus 326 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~li~ 404 (499)
-..|..|...|.+.+.+++|.++++.|.+. +.-....|...+..+.++++-+.|..++.++++.-.+ -......-.+.
T Consensus 1530 ~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQ 1608 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHH
Confidence 456677777777777777777777777764 3345566777777777777777777777777664211 12223344445
Q ss_pred HHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCH--HHHHHHHHHHHhcccc
Q 010830 405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYE--VTMHKLKKAFYNESRS 482 (499)
Q Consensus 405 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~ 482 (499)
.-.+.|+.+++..+|+.....- +--...|+.+++.-.++|+.+.+..+|++..+.++.|-. ..|...++.=-..|+.
T Consensus 1609 LEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1609 LEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred HHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence 5556777777777777766432 223457777777777777777777777777777766543 4566666655555655
No 96
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.80 E-value=0.00012 Score=78.51 Aligned_cols=338 Identities=11% Similarity=-0.020 Sum_probs=208.5
Q ss_pred HHHhCCChHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC--C----CcCHH-HHHHHH-HHH
Q 010830 122 VLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG--V----EQDVV-AVNSLL-SAI 192 (499)
Q Consensus 122 ~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~----~p~~~-~~~~ll-~~~ 192 (499)
.+...|+++.+...++.+.... ..+..........+...|++++|..++......- . .+... ....+. ..+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3444567776666665552211 1122223444555678899999999998775431 0 11111 111222 233
Q ss_pred HccCCchHHHHHHHHHHhccCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHhHcc---CCCCchHHhHHHHHHHH
Q 010830 193 CRQENQTSRALEFLNRVKKIVDP-D----GDSFAILLEGWEKEGNVEEANKTFGEMVERF---EWNPEHVLAYETFLITL 264 (499)
Q Consensus 193 ~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~~li~~~ 264 (499)
... |+++.|...++........ + ....+.+...+...|++++|...+++..... +-......++..+...+
T Consensus 463 ~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 463 IND-GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HhC-CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 455 9999999999886542221 1 2345566777888999999999998876421 11110123455667788
Q ss_pred hcCCCHHHHHHHHHHHhh----CCCC--C-CHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCC--CHhHHHHHHHH
Q 010830 265 IRGKQVDEALKFLRVMKG----ENCF--P-TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP--NLIMYNAVIGL 335 (499)
Q Consensus 265 ~~~~~~~~a~~~~~~m~~----~~~~--p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~li~~ 335 (499)
...|++++|...+++... .+.. + ....+..+...+...|++++|...+++.........+ ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 899999999999887654 2211 1 1233445556677789999999999887653200112 23445556677
Q ss_pred HHcCCChHHHHHHHHHHHHCCC-CCCHHhH-----HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCh---hhHHHHHHHH
Q 010830 336 LCNNDDVDNVFRFFDQMVFHGA-FPDSLTY-----NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP---LNCATAITML 406 (499)
Q Consensus 336 ~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~-----~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~li~~~ 406 (499)
+...|+.+.|.+.+++...... ......+ ...+..+...|+.+.|...+............ ..+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 8889999999999988754211 0111111 11224455688999999988775542211111 1134566778
Q ss_pred hccCChhHHHHHHHHHHH----CCCCCh-HHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 010830 407 LDADEPEIAIEIWNYILE----NGILPL-EASANELLVGLRNLGRLSDVRRFAEEMLNR 460 (499)
Q Consensus 407 ~~~g~~~~a~~~~~~m~~----~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 460 (499)
...|+.++|...++.... .|...+ ..+...+..++.+.|+.++|...+.+..+.
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888999999999988764 233222 234555667788999999999999998865
No 97
>PF12854 PPR_1: PPR repeat
Probab=98.77 E-value=9.9e-09 Score=58.49 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=26.1
Q ss_pred CCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 010830 425 NGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458 (499)
Q Consensus 425 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 458 (499)
.|+.||..+|++||.+||+.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3677788888888888888888888888877773
No 98
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=0.00029 Score=70.46 Aligned_cols=295 Identities=14% Similarity=0.129 Sum_probs=155.1
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCC---CCHHHHHHHHHH---------------------------HHh
Q 010830 110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV---LSLPTFASIFDS---------------------------YCG 159 (499)
Q Consensus 110 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~~~~~~~~li~~---------------------------~~~ 159 (499)
..|+..-+..++++...+-+.+.+++++.+.-.+. .+...-|.||-. +..
T Consensus 981 ~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~ 1060 (1666)
T KOG0985|consen 981 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIE 1060 (1666)
T ss_pred cCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhh
Confidence 34555555666677777777777777766655441 122233333333 333
Q ss_pred cCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 010830 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKT 239 (499)
Q Consensus 160 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 239 (499)
.+-+++|..+|+.. ..+....+.|+.. -+..++|.++-++.. ...+|..+..+-.+.|.+.+|.+-
T Consensus 1061 ~~LyEEAF~ifkkf-----~~n~~A~~VLie~----i~~ldRA~efAe~~n-----~p~vWsqlakAQL~~~~v~dAieS 1126 (1666)
T KOG0985|consen 1061 NQLYEEAFAIFKKF-----DMNVSAIQVLIEN----IGSLDRAYEFAERCN-----EPAVWSQLAKAQLQGGLVKDAIES 1126 (1666)
T ss_pred hhHHHHHHHHHHHh-----cccHHHHHHHHHH----hhhHHHHHHHHHhhC-----ChHHHHHHHHHHHhcCchHHHHHH
Confidence 34444444444433 2222232333222 144444444444332 345666666776677777666655
Q ss_pred HHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcC
Q 010830 240 FGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG 319 (499)
Q Consensus 240 ~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 319 (499)
|-+. +|+..|..+++...+.|.|++-.+++...++..-.|.. =+.+|-+|++.+++.+.++++
T Consensus 1127 yika--------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi------- 1189 (1666)
T KOG0985|consen 1127 YIKA--------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFI------- 1189 (1666)
T ss_pred HHhc--------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHh-------
Confidence 5332 24556777777777777777777776655555544433 235666777777666655443
Q ss_pred CCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhH
Q 010830 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399 (499)
Q Consensus 320 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 399 (499)
.-||......+.+-|...+.++.|.-+|... .-|..+...+...|+++.|.+.-++. -+..||
T Consensus 1190 --~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktW 1252 (1666)
T KOG0985|consen 1190 --AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA------NSTKTW 1252 (1666)
T ss_pred --cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHH
Confidence 2355555555666666666666665555433 23555666666666666665544332 234455
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 010830 400 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457 (499)
Q Consensus 400 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 457 (499)
..+-.+|...+.+.-| .|...++.....-...++.-|...|.+++.+.+++..
T Consensus 1253 K~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1253 KEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred HHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 5555555544433222 2222233333344455555566666666655555543
No 99
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=0.00015 Score=68.34 Aligned_cols=357 Identities=12% Similarity=0.090 Sum_probs=195.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHH--HHH-
Q 010830 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSL--LSA- 191 (499)
Q Consensus 115 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l--l~~- 191 (499)
..-+=+..+...|++++|.+..+.+...++.+...+..=+-+.++.++|++|+.+.+.-. -..+++.. =.+
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~------~~~~~~~~~fEKAY 87 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNG------ALLVINSFFFEKAY 87 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc------hhhhcchhhHHHHH
Confidence 334456778889999999999999999988888899999999999999999996655422 11222222 233
Q ss_pred -HHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCH
Q 010830 192 -ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270 (499)
Q Consensus 192 -~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~ 270 (499)
..+. +..++|+..++.... .+..+...-...+.+.|++++|.++|+.+.++ +.. .+...+.+-+-.-
T Consensus 88 c~Yrl-nk~Dealk~~~~~~~---~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn-~~d-----d~d~~~r~nl~a~-- 155 (652)
T KOG2376|consen 88 CEYRL-NKLDEALKTLKGLDR---LDDKLLELRAQVLYRLERYDEALDIYQHLAKN-NSD-----DQDEERRANLLAV-- 155 (652)
T ss_pred HHHHc-ccHHHHHHHHhcccc---cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCc-----hHHHHHHHHHHHH--
Confidence 3456 889999998883332 34456777778899999999999999999875 322 2222221111000
Q ss_pred HHHHHHHHHHhhCCCCCCHhhHHHHH---HHHHHcCCHhHHHHHHHHHHhcC-------CCCCCCH-----hHHHHHHHH
Q 010830 271 DEALKFLRVMKGENCFPTLKFFSNAL---DILVKLNDSTHAVQLWDIMVGIG-------FNLMPNL-----IMYNAVIGL 335 (499)
Q Consensus 271 ~~a~~~~~~m~~~~~~p~~~~~~~li---~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~-----~~~~~li~~ 335 (499)
..+... ..+......| ..+|..+. ..+...|++.+|+++++...+.+ ....-+. ..--.+...
T Consensus 156 ~a~l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayV 233 (652)
T KOG2376|consen 156 AAALQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYV 233 (652)
T ss_pred HHhhhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHH
Confidence 000000 0122222222 22333332 23345567777777766662211 0000000 011223334
Q ss_pred HHcCCChHHHHHHHHHHHHCCCCCCHHh----HHHHHHHHH---------------------------------------
Q 010830 336 LCNNDDVDNVFRFFDQMVFHGAFPDSLT----YNMIFECLI--------------------------------------- 372 (499)
Q Consensus 336 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~----~~~ll~~~~--------------------------------------- 372 (499)
+-..|+.++|..++....+... +|... -|.++..-.
T Consensus 234 lQ~~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N 312 (652)
T KOG2376|consen 234 LQLQGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRN 312 (652)
T ss_pred HHHhcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777766665432 22211 111110000
Q ss_pred ------hcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcc--CChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhC
Q 010830 373 ------KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA--DEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444 (499)
Q Consensus 373 ------~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 444 (499)
..+..+.+.++-... -+..|. ..+.+++..+.+. .....+.+++....+..-.-...+.-.++......
T Consensus 313 ~~lL~l~tnk~~q~r~~~a~l--p~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~ 389 (652)
T KOG2376|consen 313 NALLALFTNKMDQVRELSASL--PGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQ 389 (652)
T ss_pred HHHHHHHhhhHHHHHHHHHhC--CccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhc
Confidence 001111111111110 022232 3344444444322 23566777776665533222234555566777889
Q ss_pred CChHHHHHHHH--------HHHHcCCccCHHHHHHHHHHHHhcccc--hHHHHHHHHHHHhhc
Q 010830 445 GRLSDVRRFAE--------EMLNRRILIYEVTMHKLKKAFYNESRS--MRDIFDSLERRCKTS 497 (499)
Q Consensus 445 g~~~~a~~~~~--------~m~~~~~~p~~~~~~~ll~~~~~~g~~--a~~~~~~~~~~~~~~ 497 (499)
|+++.|.+++. .+.+.+..|- +...+..-+.+.++. |.+++++.++-|+..
T Consensus 390 gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~ 450 (652)
T KOG2376|consen 390 GNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQ 450 (652)
T ss_pred CCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 99999999998 5555555444 444444445554444 889999998888765
No 100
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=2.8e-06 Score=79.41 Aligned_cols=248 Identities=14% Similarity=0.080 Sum_probs=161.3
Q ss_pred HccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHH
Q 010830 193 CRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272 (499)
Q Consensus 193 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~ 272 (499)
.+. |++.+|.-.|+...+..+-+...|.-|.......++-..|+..+++. +.+.|+|....-.|.-.|...|.-..
T Consensus 296 m~n-G~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rc---l~LdP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 296 MKN-GDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRC---LELDPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred Hhc-CCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHH---HhcCCccHHHHHHHHHHHhhhhhHHH
Confidence 345 77888888888877766777888888888888888888888887777 45588888888888888888888888
Q ss_pred HHHHHHHHhhCCCC-----C---CHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHH
Q 010830 273 ALKFLRVMKGENCF-----P---TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344 (499)
Q Consensus 273 a~~~~~~m~~~~~~-----p---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 344 (499)
|++.++.-.....+ + +...-.. ..+.....+.+..++|-++..... ..+|..++..|.-.|.-.|++++
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~-~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLP-TKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCC-CCCChhHHhhhHHHHhcchHHHH
Confidence 88888776443210 0 0000000 111112223344455544443321 34677777778778888888888
Q ss_pred HHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccCChhHHHHHHHHH
Q 010830 345 VFRFFDQMVFHGAFP-DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT-PLNCATAITMLLDADEPEIAIEIWNYI 422 (499)
Q Consensus 345 a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m 422 (499)
|.+.|+..... +| |..+||.|...++...+.++|+.-|+++++. .|+ +...-.|.-+|...|.+++|.+.|-..
T Consensus 449 aiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 449 AVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 88888888773 44 4567888888888888888888888888774 343 223334566677888888888777655
Q ss_pred HH---C------CCCChHHHHHHHHHHHHhCCChHHHH
Q 010830 423 LE---N------GILPLEASANELLVGLRNLGRLSDVR 451 (499)
Q Consensus 423 ~~---~------~~~p~~~~~~~ll~~~~~~g~~~~a~ 451 (499)
+. . +..++..+|.+|=.++.-.++.|-+.
T Consensus 525 L~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 525 LSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred HHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 42 1 11223456666665666566655443
No 101
>PLN02789 farnesyltranstransferase
Probab=98.72 E-value=2.4e-05 Score=71.20 Aligned_cols=138 Identities=7% Similarity=0.003 Sum_probs=63.4
Q ss_pred HHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCc--
Q 010830 122 VLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAG-KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ-- 198 (499)
Q Consensus 122 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-- 198 (499)
.+...++.++|+.+++.+.+.++.+..+|+..-..+...| +++++++.++.+.+.. +-+..+|+..-..+.+. |.
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l-~~~~ 123 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKL-GPDA 123 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHc-Cchh
Confidence 3444455555555555555555544445554444444444 3455555555554432 22222333222222222 22
Q ss_pred hHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHH
Q 010830 199 TSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264 (499)
Q Consensus 199 ~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~ 264 (499)
.++++.+++++.+..+.|..+|+...-++.+.|+++++++.++++.+. .|.|..+|+.....+
T Consensus 124 ~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~---d~~N~sAW~~R~~vl 186 (320)
T PLN02789 124 ANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE---DVRNNSAWNQRYFVI 186 (320)
T ss_pred hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---CCCchhHHHHHHHHH
Confidence 134444444444444445555555555555555555555555555432 333444444444333
No 102
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.72 E-value=3.9e-06 Score=78.46 Aligned_cols=218 Identities=17% Similarity=0.120 Sum_probs=153.3
Q ss_pred hcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 010830 91 SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSF 170 (499)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 170 (499)
..|+...|.-+|+-+....+-+..+|-.|....+..++-..|+..+.+..+.++.+....-.|.-.|...|.-..|.+++
T Consensus 297 ~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L 376 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKML 376 (579)
T ss_pred hcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 45677788888887777777788888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhCCCC--------cCHHHHHHHHHHHHccCCchHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010830 171 DVMSMHGVE--------QDVVAVNSLLSAICRQENQTSRALEFLNRVKK--IVDPDGDSFAILLEGWEKEGNVEEANKTF 240 (499)
Q Consensus 171 ~~m~~~g~~--------p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 240 (499)
+.......+ ++...-+. ..+... ..+....++|-.+.. +...|..+...|.-.|--.|++++|.+.|
T Consensus 377 ~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~-~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 377 DKWIRNKPKYVHLVSAGENEDFENT--KSFLDS-SHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHhCccchhccccCccccccCC--cCCCCH-HHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 877543200 00000000 111111 234445555555543 33477777888888888888888888888
Q ss_pred HHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCH-hhHHHHHHHHHHcCCHhHHHHHHHHHH
Q 010830 241 GEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL-KFFSNALDILVKLNDSTHAVQLWDIMV 316 (499)
Q Consensus 241 ~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~~ 316 (499)
+.. +.++|.|...||-|...+....+..+|+..|.+..+.. |+- .....|.-+|...|.+++|.+.|-..+
T Consensus 454 ~~A---L~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 454 EAA---LQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ--PGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHH---HhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--CCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 888 45588888888888888888888888888888877643 442 222334456777888888887776655
No 103
>PF12854 PPR_1: PPR repeat
Probab=98.71 E-value=2.5e-08 Score=56.84 Aligned_cols=32 Identities=41% Similarity=0.644 Sum_probs=17.1
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHH
Q 010830 356 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387 (499)
Q Consensus 356 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 387 (499)
|+.||..||++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
No 104
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.70 E-value=4e-06 Score=73.97 Aligned_cols=187 Identities=10% Similarity=-0.015 Sum_probs=109.6
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHH---
Q 010830 110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSL---PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV--- 183 (499)
Q Consensus 110 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--- 183 (499)
......+..+...+...|+++.|...|+++....+.+. .++..+...+...|++++|...++++.+. .|+..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchH
Confidence 34566777778888888888888888888877765443 46677888888888888888888888765 23211
Q ss_pred -HHHHHHHHHHcc-------CCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHH
Q 010830 184 -AVNSLLSAICRQ-------ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255 (499)
Q Consensus 184 -~~~~ll~~~~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 255 (499)
++..+-.++... .|+.+.|.+.++.+.+..+.+...+..+... ..+... -..
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~--------------~~~~~~------~~~ 167 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRM--------------DYLRNR------LAG 167 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHH--------------HHHHHH------HHH
Confidence 232222233221 1456777777777655433333332221111 000000 000
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHhhCC--CCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 010830 256 AYETFLITLIRGKQVDEALKFLRVMKGEN--CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI 318 (499)
Q Consensus 256 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 318 (499)
....+...+.+.|++++|+..+++..+.. .+.....+..+..++.+.|+.++|..+++.+...
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 11234455667777777777777666542 1122455666677777777777777776666553
No 105
>PLN02789 farnesyltranstransferase
Probab=98.68 E-value=4.4e-05 Score=69.53 Aligned_cols=118 Identities=14% Similarity=0.119 Sum_probs=47.5
Q ss_pred CchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCH--HHH
Q 010830 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG-NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV--DEA 273 (499)
Q Consensus 197 ~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~--~~a 273 (499)
+..++|+.+.+++....+-+..+|+..-..+...| ++++++..++++.+. .|.+..+|+.....+.+.|+. +++
T Consensus 51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~---npknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED---NPKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH---CCcchHHhHHHHHHHHHcCchhhHHH
Confidence 34444444444443333333333333333333333 344444444444332 333444444333333333321 334
Q ss_pred HHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 010830 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI 318 (499)
Q Consensus 274 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 318 (499)
+.+++++.+.. .-+..+|+...-++...|+++++++.++++++.
T Consensus 128 l~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 128 LEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44444444332 123344444444444444444444444444443
No 106
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.67 E-value=1.9e-05 Score=81.09 Aligned_cols=242 Identities=12% Similarity=0.104 Sum_probs=162.7
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCC---cCHHHHHHHHHHHHccCCchHHHHHHHHHHhc
Q 010830 136 VRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH-GVE---QDVVAVNSLLSAICRQENQTSRALEFLNRVKK 211 (499)
Q Consensus 136 ~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~---p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 211 (499)
|++.....+.+...|-..|......++.++|.+++++.... ++. --...|.++++.--.. |.-+...++|+++.+
T Consensus 1447 ferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y-G~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY-GTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh-CcHHHHHHHHHHHHH
Confidence 33444444444555555555555566666666666555432 111 1123455555554445 666667777777655
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCC---
Q 010830 212 IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT--- 288 (499)
Q Consensus 212 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--- 288 (499)
-. ....+|..|...|.+.+.+++|.++++.|.++++- ....|...+..+.+.++-+.|..++.+..+.- |.
T Consensus 1526 yc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q---~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l--Pk~eH 1599 (1710)
T KOG1070|consen 1526 YC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ---TRKVWIMYADFLLRQNEAEAARELLKRALKSL--PKQEH 1599 (1710)
T ss_pred hc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc---hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc--chhhh
Confidence 22 22456778888888888889999999998887662 44578888888888888888888888766532 32
Q ss_pred HhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCH--HhHHH
Q 010830 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS--LTYNM 366 (499)
Q Consensus 289 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ 366 (499)
.....-.+..-.+.|+.+.+..+|+..+.. .+.-...|+..|+.-.+.|+.+.++.+|++....++.|-. ..|..
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~a---yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKk 1676 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSA---YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKK 1676 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhh---CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHH
Confidence 333444555667889999999999988876 3556788999999999999999999999999988776654 46677
Q ss_pred HHHHHHhcCCHhHHHHHHHHH
Q 010830 367 IFECLIKNKRVHEVEKFFHEM 387 (499)
Q Consensus 367 ll~~~~~~g~~~~a~~~~~~~ 387 (499)
.+..--+.|+-+.++.+=.++
T Consensus 1677 wLeyEk~~Gde~~vE~VKarA 1697 (1710)
T KOG1070|consen 1677 WLEYEKSHGDEKNVEYVKARA 1697 (1710)
T ss_pred HHHHHHhcCchhhHHHHHHHH
Confidence 776666667755544443333
No 107
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.62 E-value=1e-05 Score=68.44 Aligned_cols=152 Identities=12% Similarity=0.023 Sum_probs=122.2
Q ss_pred hcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 010830 91 SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSF 170 (499)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 170 (499)
..|+.+....+........+.|....+.++....+.|++..|...|.+.....++|..+|+.+.-+|.+.|+++.|..-|
T Consensus 78 ~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay 157 (257)
T COG5010 78 LRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAY 157 (257)
T ss_pred hcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHH
Confidence 35777777777776666677788888889999999999999999999999998999999999999999999999999999
Q ss_pred HHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010830 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244 (499)
Q Consensus 171 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 244 (499)
.+..+.- .-+...+|.+.-.+.-. |+.+.|..++........-|..+-..+.......|++++|.++...-.
T Consensus 158 ~qAl~L~-~~~p~~~nNlgms~~L~-gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 158 RQALELA-PNEPSIANNLGMSLLLR-GDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHhc-cCCchhhhhHHHHHHHc-CCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 8887763 22344555555555556 889999999888877666678888888888888999998888776553
No 108
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.61 E-value=0.00027 Score=69.15 Aligned_cols=243 Identities=16% Similarity=0.158 Sum_probs=149.4
Q ss_pred CCCHHHHHHHHHh----hcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCC--------C-
Q 010830 78 IPTPDLVHEVLQL----SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG--------V- 144 (499)
Q Consensus 78 ~~~~~~~~~~l~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--------~- 144 (499)
..++.+-..+|.. .-|+.+.|.+-.+.++ +...|..|.+.|.+..+++-|.-.+..|.... .
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik-----S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK-----SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh-----hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 3566666667662 3477787777776543 45688889999999888888877776665432 0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHH
Q 010830 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224 (499)
Q Consensus 145 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll 224 (499)
.+..+=.-+.......|.+++|+.+|.+-++.. |++-+.+..|.+++|.++-+.-.+. --..||....
T Consensus 798 ~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~D----------LlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA 865 (1416)
T KOG3617|consen 798 NGEEDEAKVAVLAIELGMLEEALILYRQCKRYD----------LLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYA 865 (1416)
T ss_pred CCcchhhHHHHHHHHHhhHHHHHHHHHHHHHHH----------HHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHH
Confidence 111223334444567788888888888876532 3333333338888888876653321 1123555555
Q ss_pred HHHHhcCCHHHHHHHHHHHhHc-------cCCCC----------chHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCC
Q 010830 225 EGWEKEGNVEEANKTFGEMVER-------FEWNP----------EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287 (499)
Q Consensus 225 ~~~~~~g~~~~a~~~~~~~~~~-------~~~~p----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 287 (499)
..+-..+|++.|++.|++.... +.-.| .|...|.-....+-..|+.+.|+.+|...++
T Consensus 866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----- 940 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----- 940 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----
Confidence 5566677777777777653110 00001 1223344444555555666666666665433
Q ss_pred CHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 010830 288 TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354 (499)
Q Consensus 288 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 354 (499)
|-++++..|-.|+.++|-++-++ .| |......|.+.|-..|++.+|..+|-+...
T Consensus 941 ----~fs~VrI~C~qGk~~kAa~iA~e---sg-----d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 941 ----YFSMVRIKCIQGKTDKAARIAEE---SG-----DKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred ----hhhheeeEeeccCchHHHHHHHh---cc-----cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 44556666677888888776553 33 666777788888888999998888877653
No 109
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.61 E-value=1.3e-05 Score=70.72 Aligned_cols=63 Identities=16% Similarity=0.151 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCH----HHHHHHHHHHHccCCchHHHHHHHHHHhc
Q 010830 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDV----VAVNSLLSAICRQENQTSRALEFLNRVKK 211 (499)
Q Consensus 146 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 211 (499)
....+..+...+...|++++|...|+++... .|+. .++..+...+... |++++|...++.+.+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~-~~~~~A~~~~~~~l~ 98 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKS-GDYAEAIAAADRFIR 98 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Confidence 3445555555566666666666666655443 2221 2333344444444 555555555555443
No 110
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.60 E-value=4.2e-05 Score=74.55 Aligned_cols=245 Identities=13% Similarity=0.151 Sum_probs=164.4
Q ss_pred CCCCCHHHHHHHH--HHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-C-------
Q 010830 108 GQRLSPYAWNLMV--DVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH-G------- 177 (499)
Q Consensus 108 ~~~~~~~~~~~li--~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g------- 177 (499)
...-|..+-..++ +.|..-|+.+.|.+-++.++ +...|..+...|.+..++|-|.-.+..|... |
T Consensus 721 le~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik-----S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a 795 (1416)
T KOG3617|consen 721 LENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK-----SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRA 795 (1416)
T ss_pred ccccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh-----hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHH
Confidence 3456777777777 45788899999998887776 4567999999999999999999888888542 2
Q ss_pred -CCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHh
Q 010830 178 -VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256 (499)
Q Consensus 178 -~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 256 (499)
..++. -..-...++-..|.+++|+.+|.+-++ |..|=+.|...|.+++|.++-+.-- .+.. ..|
T Consensus 796 ~q~~~e--~eakvAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~D---RiHL--r~T 860 (1416)
T KOG3617|consen 796 QQNGEE--DEAKVAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKD---RIHL--RNT 860 (1416)
T ss_pred HhCCcc--hhhHHHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhcc---ceeh--hhh
Confidence 12221 111122222222899999999998876 4556667888999999998876542 2222 236
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhhC----------C---------CCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 010830 257 YETFLITLIRGKQVDEALKFLRVMKGE----------N---------CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317 (499)
Q Consensus 257 ~~~li~~~~~~~~~~~a~~~~~~m~~~----------~---------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 317 (499)
|..-..-+-..++.+.|++.|++.... . -.-|...|.....-+-..|+.+.|+.+|....
T Consensus 861 yy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~- 939 (1416)
T KOG3617|consen 861 YYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK- 939 (1416)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-
Confidence 777777788889999999988753211 1 00122223333333334566666666555433
Q ss_pred cCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010830 318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389 (499)
Q Consensus 318 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 389 (499)
-|-++++..|-.|+.++|-++-++-. |....-.+.+.|-..|++.+|..+|.+...
T Consensus 940 ----------D~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 940 ----------DYFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred ----------hhhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 25566777777788888877665432 555566678888899999999998887643
No 111
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=0.00047 Score=64.39 Aligned_cols=330 Identities=10% Similarity=0.069 Sum_probs=213.8
Q ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC-HHHHHHHHHHHHccCCch
Q 010830 121 DVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD-VVAVNSLLSAICRQENQT 199 (499)
Q Consensus 121 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~ 199 (499)
.+....|+++.|+.+|.+.....+++...|..-..+|+..|++++|++=-.+-++. .|+ ..-|+..-.++.-. |++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~l-g~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGL-GDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhc-ccH
Confidence 45678899999999999999999889999999999999999999999877766654 555 45677777777777 999
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHH---HHHHHHHhHcc--CCCCchHHhHHHHHHHHhcC-------
Q 010830 200 SRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA---NKTFGEMVERF--EWNPEHVLAYETFLITLIRG------- 267 (499)
Q Consensus 200 ~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a---~~~~~~~~~~~--~~~p~~~~~~~~li~~~~~~------- 267 (499)
++|+.-|.+=.+..+.|...++.+..++.......+. -.++..+.... .... ....|..++..+-+.
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~-~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSL-SDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhh-ccHHHHHHHHHhhcCcHhhhcc
Confidence 9999999987776777788888888877211000000 01111111000 0000 001233333332222
Q ss_pred ---CCHHHHHHHHHH-----HhhCC-------CCCC----------------------HhhHHHHHHHHHHcCCHhHHHH
Q 010830 268 ---KQVDEALKFLRV-----MKGEN-------CFPT----------------------LKFFSNALDILVKLNDSTHAVQ 310 (499)
Q Consensus 268 ---~~~~~a~~~~~~-----m~~~~-------~~p~----------------------~~~~~~li~~~~~~~~~~~a~~ 310 (499)
.++..+.-.+.. +...| ..|. ..-...+.++..+..+++.|.+
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 112222222111 00111 1110 1123456677778888999999
Q ss_pred HHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHH-------HHHHHHhcCCHhHHHHH
Q 010830 311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM-------IFECLIKNKRVHEVEKF 383 (499)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-------ll~~~~~~g~~~~a~~~ 383 (499)
-+...... ..+..-++..-.+|...|.+..+...-+...+.|-. ...-|+. +..+|.+.++++.+...
T Consensus 246 ~y~~a~el----~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~ 320 (539)
T KOG0548|consen 246 HYAKALEL----ATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKY 320 (539)
T ss_pred HHHHHHhH----hhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence 99888874 345666677778888888887777766665554422 1122222 33466667888999999
Q ss_pred HHHHHHCCCCCChhhHH-------------------------HHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHH
Q 010830 384 FHEMIKNEWQPTPLNCA-------------------------TAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 438 (499)
Q Consensus 384 ~~~~~~~~~~p~~~~~~-------------------------~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 438 (499)
|++.......|+...-. .=...+.+.|++..|...|.++++.. +-|...|..-.
T Consensus 321 ~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRA 399 (539)
T KOG0548|consen 321 YQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRA 399 (539)
T ss_pred HHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHH
Confidence 98877654444432211 11345667799999999999999876 56778888888
Q ss_pred HHHHhCCChHHHHHHHHHHHHc
Q 010830 439 VGLRNLGRLSDVRRFAEEMLNR 460 (499)
Q Consensus 439 ~~~~~~g~~~~a~~~~~~m~~~ 460 (499)
-+|.+.|.+..|++-.+...+.
T Consensus 400 ac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 400 ACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHHHHhhHHHHHHHHHHHHhc
Confidence 8999999999998887777765
No 112
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.56 E-value=0.00045 Score=60.82 Aligned_cols=299 Identities=15% Similarity=0.108 Sum_probs=211.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHH---HHHHccCCchHHHHHHHHHHhccCCCCHHH-HH
Q 010830 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLL---SAICRQENQTSRALEFLNRVKKIVDPDGDS-FA 221 (499)
Q Consensus 146 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~ 221 (499)
++.---.+...+...|++.+|+.-|...++ .|+..|.++. ..|... |+...|+.-+..+.+ .+||-.. -.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve----~dp~~Y~aifrRaT~yLAm-Gksk~al~Dl~rVle-lKpDF~~ARi 110 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVE----GDPNNYQAIFRRATVYLAM-GKSKAALQDLSRVLE-LKPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHc----CCchhHHHHHHHHHHHhhh-cCCccchhhHHHHHh-cCccHHHHHH
Confidence 344455677788889999999999988874 4455555544 356666 777777777776654 3455332 22
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhHccCCCCchH---Hh------------HHHHHHHHhcCCCHHHHHHHHHHHhhCCCC
Q 010830 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV---LA------------YETFLITLIRGKQVDEALKFLRVMKGENCF 286 (499)
Q Consensus 222 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~---~~------------~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 286 (499)
--...+.+.|.++.|..-|+.+.+. .|.+. .. ....+..+...|+...|+.+...+.+.. +
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~---~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~ 186 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQH---EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-P 186 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhc---CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-c
Confidence 2345677899999999999999765 44211 11 1233456667789999999998888765 3
Q ss_pred CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHh---
Q 010830 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLT--- 363 (499)
Q Consensus 287 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--- 363 (499)
-|...|..-..+|...|++..|+.=++...+.. ..+..++--+-..+...|+.+.++...++-.+ +.||...
T Consensus 187 Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs---~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~ 261 (504)
T KOG0624|consen 187 WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS---QDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFP 261 (504)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc---ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHH
Confidence 467777778899999999999998888777764 44677777788888899999999998888877 4566532
Q ss_pred -HHHH---------HHHHHhcCCHhHHHHHHHHHHHCCCCCChhh---HHHHHHHHhccCChhHHHHHHHHHHHCCCCCh
Q 010830 364 -YNMI---------FECLIKNKRVHEVEKFFHEMIKNEWQPTPLN---CATAITMLLDADEPEIAIEIWNYILENGILPL 430 (499)
Q Consensus 364 -~~~l---------l~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 430 (499)
|..+ +......+++.++.+-.+...+......... +..+-.++...|++.+|++...+..+ +.||
T Consensus 262 ~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~ 339 (504)
T KOG0624|consen 262 FYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPD 339 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCch
Confidence 2211 1123456777788877777777643322333 34455666777899999999998887 4444
Q ss_pred -HHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 010830 431 -EASANELLVGLRNLGRLSDVRRFAEEMLNRR 461 (499)
Q Consensus 431 -~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 461 (499)
+.++.--..+|.-...++.|+.-|+...+.+
T Consensus 340 dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 340 DVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 7778777888988899999999999888654
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.56 E-value=1.8e-05 Score=66.97 Aligned_cols=158 Identities=13% Similarity=0.146 Sum_probs=92.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc
Q 010830 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230 (499)
Q Consensus 151 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 230 (499)
..+-..+...|+-+....+....... ..-|....+.+.....+. |++..|...+.+....-++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~-g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRN-GNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHh-cchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 44445555556656555555543321 133444445556666666 6666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHH
Q 010830 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310 (499)
Q Consensus 231 g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 310 (499)
|++++|..-|.+..+ +.|.+...+|.+.-.+.-.|+.+.|..++......+. -|..+-..+.......|+++.|++
T Consensus 148 Gr~~~Ar~ay~qAl~---L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 148 GRFDEARRAYRQALE---LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred cChhHHHHHHHHHHH---hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHh
Confidence 666666666666643 3444455666666666666666666666666555442 244445555556666666666666
Q ss_pred HHHH
Q 010830 311 LWDI 314 (499)
Q Consensus 311 ~~~~ 314 (499)
+...
T Consensus 224 i~~~ 227 (257)
T COG5010 224 IAVQ 227 (257)
T ss_pred hccc
Confidence 5443
No 114
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=0.00011 Score=62.34 Aligned_cols=150 Identities=19% Similarity=0.246 Sum_probs=75.3
Q ss_pred HHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHH----
Q 010830 262 ITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC---- 337 (499)
Q Consensus 262 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~---- 337 (499)
..|++.+++++|++.... + -+......=+..+.+..+.+.|++.++.|.+.. +..+.+.|..++.
T Consensus 116 ~i~~~~~~~deAl~~~~~----~--~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id-----ed~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHL----G--ENLEAAALNVQILLKMHRFDLAEKELKKMQQID-----EDATLTQLAQAWVKLAT 184 (299)
T ss_pred HHhhcCCChHHHHHHHhc----c--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-----hHHHHHHHHHHHHHHhc
Confidence 345555555555555443 1 011122222233444555555555555555533 3344444443332
Q ss_pred cCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChh-HHH
Q 010830 338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE-IAI 416 (499)
Q Consensus 338 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~-~a~ 416 (499)
..+.+.+|.-+|++|.++ ..|+..+.+....++...|++++|..++++.+.+... ++.+...++-+-...|... ...
T Consensus 185 ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred cchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHH
Confidence 234566666677766654 4566666666666666677777777777766665422 3444444444333444433 333
Q ss_pred HHHHHHHH
Q 010830 417 EIWNYILE 424 (499)
Q Consensus 417 ~~~~~m~~ 424 (499)
+.+..+..
T Consensus 263 r~l~QLk~ 270 (299)
T KOG3081|consen 263 RNLSQLKL 270 (299)
T ss_pred HHHHHHHh
Confidence 44444443
No 115
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=0.00026 Score=70.82 Aligned_cols=357 Identities=13% Similarity=0.139 Sum_probs=195.0
Q ss_pred hHHHHHHhcCCCCCH-HHHHHHHH--hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 010830 67 DIESALACTGIIPTP-DLVHEVLQ--LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG 143 (499)
Q Consensus 67 ~l~~~l~~~~~~~~~-~~~~~~l~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 143 (499)
++...+..++..|.. .++-.-.. ...|++.+|-.+-....+|.-.++.|-+.+=..=...|+..-.+..|..+...|
T Consensus 345 eLal~~A~R~nLaGAe~Lfv~rFneLfaqG~Y~eAAkvAAsSPrgILRt~~Ti~kFq~V~a~~Gq~sPLLqYFg~LLdqG 424 (1666)
T KOG0985|consen 345 ELALRLAVRANLAGAENLFVRRFNELFAQGEYEEAAKVAASSPRGILRTPGTINKFQSVPAQPGQPSPLLQYFGTLLDQG 424 (1666)
T ss_pred HHHHHhhhhcCCccHHHHHHHHHHHHHhCccHHHHHHHHHhCchhhhcCHHHHHHHHcCCCCCCCCCcHHHHHHHHHhcc
Confidence 344444444444442 22333232 346777777777776666666777777777777777777777788888888777
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHH
Q 010830 144 VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223 (499)
Q Consensus 144 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 223 (499)
..|..---.+++.-...|+.+-..+++.+=+ -+++-=+.-+.+. -+...|+.+|.+.. +-+.+
T Consensus 425 kLNk~ETLEL~RpVL~Q~RkqLlekWl~EdK--------LeCSEELGDlVK~-~d~~lAL~iYlrAn--------vp~KV 487 (1666)
T KOG0985|consen 425 KLNKYETLELCRPVLQQGRKQLLEKWLKEDK--------LECSEELGDLVKP-YDTTLALSIYLRAN--------VPAKV 487 (1666)
T ss_pred cccHHHHHHHHHHHHhhhHHHHHHHHhhhhh--------hhhhHHhcCcccc-CCchHHHHHHHHcC--------CcHHH
Confidence 6665544445555556666655555553311 1111111111111 22223333333221 12334
Q ss_pred HHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcC
Q 010830 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303 (499)
Q Consensus 224 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 303 (499)
+.+|+.+|+++++.-...+. |..|+ |-.+++...+ -..+.+.++...|.+.. +...-++.+.+.+...+
T Consensus 488 i~cfAE~Gqf~KiilY~kKv----GyTPd----ymflLq~l~r-~sPD~~~qFa~~l~Q~~--~~~~die~I~DlFme~N 556 (1666)
T KOG0985|consen 488 IQCFAETGQFKKIILYAKKV----GYTPD----YMFLLQQLKR-SSPDQALQFAMMLVQDE--EPLADIEQIVDLFMELN 556 (1666)
T ss_pred HHHHHHhcchhHHHHHHHHc----CCCcc----HHHHHHHHHc-cChhHHHHHHHHhhccC--CCcccHHHHHHHHHHHH
Confidence 55566666666555444332 55662 3444555444 45555555555554422 11122222222222222
Q ss_pred CHhHHHHHH------------------------------HHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 010830 304 DSTHAVQLW------------------------------DIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353 (499)
Q Consensus 304 ~~~~a~~~~------------------------------~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 353 (499)
....+..++ +.+...+ . -...-+..+.+.|.+.|-...|++.+.++.
T Consensus 557 ~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~--m-FtHyDra~IAqLCEKAGL~qraLehytDl~ 633 (1666)
T KOG0985|consen 557 LIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVADAILGND--M-FTHYDRAEIAQLCEKAGLLQRALEHYTDLY 633 (1666)
T ss_pred hhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHHHHHhcc--c-cccccHHHHHHHHHhcchHHHHHHhcccHH
Confidence 222222222 2222221 1 012226677788889999999998887765
Q ss_pred HCCCCCCHHhHH----HHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHH-----
Q 010830 354 FHGAFPDSLTYN----MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE----- 424 (499)
Q Consensus 354 ~~g~~p~~~~~~----~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----- 424 (499)
+ ++-..+.-+ --+..|...-.++.+.+.++.|...+++-|..+...+..-|...=..+...++|+....
T Consensus 634 D--IKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~ 711 (1666)
T KOG0985|consen 634 D--IKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLY 711 (1666)
T ss_pred H--HHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHH
Confidence 4 111111100 11223444556788999999999988888888777777667666556666666665543
Q ss_pred ------CCCCChHHHHHHHHHHHHhCCChHHHHHHHHH
Q 010830 425 ------NGILPLEASANELLVGLRNLGRLSDVRRFAEE 456 (499)
Q Consensus 425 ------~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 456 (499)
-++.-|+.+.--.|.+.|+.|++.+..++.++
T Consensus 712 yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicre 749 (1666)
T KOG0985|consen 712 YFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRE 749 (1666)
T ss_pred HHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhc
Confidence 13555666667789999999999988877654
No 116
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=9.2e-05 Score=62.77 Aligned_cols=244 Identities=14% Similarity=0.086 Sum_probs=130.1
Q ss_pred CchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHH-H
Q 010830 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL-K 275 (499)
Q Consensus 197 ~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~-~ 275 (499)
|.+..++..-...... +.+...-.-+.++|...|.+.... .++.. +-.| .......+......-++.++.+ +
T Consensus 22 Gnyq~~ine~~~~~~~-~~~~e~d~y~~raylAlg~~~~~~---~eI~~--~~~~-~lqAvr~~a~~~~~e~~~~~~~~~ 94 (299)
T KOG3081|consen 22 GNYQQCINEAEKFSSS-KTDVELDVYMYRAYLALGQYQIVI---SEIKE--GKAT-PLQAVRLLAEYLELESNKKSILAS 94 (299)
T ss_pred hHHHHHHHHHHhhccc-cchhHHHHHHHHHHHHcccccccc---ccccc--ccCC-hHHHHHHHHHHhhCcchhHHHHHH
Confidence 6666666555444331 133444444556666666554332 22222 2222 2333333333333334433333 3
Q ss_pred HHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 010830 276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355 (499)
Q Consensus 276 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 355 (499)
+.+.+.......+......-...|++.|++++|.+...... +......=+..+.+..+++-|.+.+++|.+-
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--------NLEAAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 33444444444443444444556777777777777766521 2333333344555666777777777777763
Q ss_pred CCCCCHHhHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChH
Q 010830 356 GAFPDSLTYNMIFECLIK----NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 431 (499)
Q Consensus 356 g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 431 (499)
-+..|.+.|..++.+ .+.+.+|.-+|++|-++ ..|+..+.+....++...|++++|..++++.....-. ++
T Consensus 167 ---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dp 241 (299)
T KOG3081|consen 167 ---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DP 241 (299)
T ss_pred ---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CH
Confidence 245566666666654 34567777777777653 4577777777777777777888888877777764433 23
Q ss_pred HHHHHHHHHHHhCCC-hHHHHHHHHHHHHc
Q 010830 432 ASANELLVGLRNLGR-LSDVRRFAEEMLNR 460 (499)
Q Consensus 432 ~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~ 460 (499)
.+..-++.+-...|. .+-..+.+.+++..
T Consensus 242 etL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 242 ETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 333333333333343 33444555555543
No 117
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.55 E-value=7.8e-05 Score=75.91 Aligned_cols=172 Identities=6% Similarity=0.057 Sum_probs=124.1
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHH
Q 010830 109 QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSL 188 (499)
Q Consensus 109 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 188 (499)
.+.+...|..|+..+...+++++|.++.+...+..+.....|-.+...+.+.++.+++..+ .+.
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l-------------- 90 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLI-------------- 90 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhh--------------
Confidence 3456789999999999999999999999988877765555565555578888887777666 332
Q ss_pred HHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCC
Q 010830 189 LSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268 (499)
Q Consensus 189 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~ 268 (499)
...... .++..+..+...+.. ..-+...+..+..+|-+.|+.++|..+++++.+ +.|+|+.+.|.+...|...
T Consensus 91 -~~~~~~-~~~~~ve~~~~~i~~-~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~---~D~~n~~aLNn~AY~~ae~- 163 (906)
T PRK14720 91 -DSFSQN-LKWAIVEHICDKILL-YGENKLALRTLAEAYAKLNENKKLKGVWERLVK---ADRDNPEIVKKLATSYEEE- 163 (906)
T ss_pred -hhcccc-cchhHHHHHHHHHHh-hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHh-
Confidence 222222 334333333333333 234445778888999999999999999999965 3588999999999999999
Q ss_pred CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 010830 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI 318 (499)
Q Consensus 269 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 318 (499)
+.++|++++.+.... +...+++..+.++|..+...
T Consensus 164 dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 164 DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 999999988876553 45556677777777777664
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.53 E-value=9.1e-06 Score=78.11 Aligned_cols=219 Identities=11% Similarity=0.072 Sum_probs=174.8
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 010830 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS 190 (499)
Q Consensus 111 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 190 (499)
|--..--.+...+.+.|-...|..+|++.. .|.-+|.+|...|+.++|..+.....+. +||...|..+.+
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erle--------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD 465 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERLE--------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD 465 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhHH--------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence 333444567788888999999999998765 4888999999999999999999888774 889999999988
Q ss_pred HHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCH
Q 010830 191 AICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270 (499)
Q Consensus 191 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~ 270 (499)
..... .-+++|.++++....+ .-..+.......++++++.+.|+.-.+ ++|-...+|..+..+..+.+++
T Consensus 466 v~~d~-s~yEkawElsn~~sar------A~r~~~~~~~~~~~fs~~~~hle~sl~---~nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 466 VLHDP-SLYEKAWELSNYISAR------AQRSLALLILSNKDFSEADKHLERSLE---INPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hccCh-HHHHHHHHHhhhhhHH------HHHhhccccccchhHHHHHHHHHHHhh---cCccchhHHHhccHHHHHHhhh
Confidence 87777 8889999998875432 112222233457899999999988744 4555667899999999999999
Q ss_pred HHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHH
Q 010830 271 DEALKFLRVMKGENCFPT-LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349 (499)
Q Consensus 271 ~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 349 (499)
+.|.+.|..-.... || ...|+.+-.+|.+.++..+|...+++..+.+ .-+...|...+....+.|.+++|++.+
T Consensus 536 q~av~aF~rcvtL~--Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn---~~~w~iWENymlvsvdvge~eda~~A~ 610 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLE--PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN---YQHWQIWENYMLVSVDVGEFEDAIKAY 610 (777)
T ss_pred HHHHHHHHHHhhcC--CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC---CCCCeeeechhhhhhhcccHHHHHHHH
Confidence 99999998766543 44 5689999999999999999999999999876 346677888888889999999999999
Q ss_pred HHHHH
Q 010830 350 DQMVF 354 (499)
Q Consensus 350 ~~m~~ 354 (499)
.++..
T Consensus 611 ~rll~ 615 (777)
T KOG1128|consen 611 HRLLD 615 (777)
T ss_pred HHHHH
Confidence 88875
No 119
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.53 E-value=0.00012 Score=67.51 Aligned_cols=218 Identities=10% Similarity=0.044 Sum_probs=149.5
Q ss_pred CHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHH
Q 010830 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311 (499)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 311 (499)
++.++...-+.+....+....+...+...+.+......-..+-.++.+..+.+ -...-|...+ .+...|+.+.|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~aa~YG~A~-~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKRG--GLAAQYGRAL-QTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCcc--chHHHHHHHH-HHHHhcccchHHHH
Confidence 45555555556554334444455566666665555544444444443333311 1223343333 45577999999999
Q ss_pred HHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010830 312 WDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPD-SLTYNMIFECLIKNKRVHEVEKFFHEMIKN 390 (499)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 390 (499)
++.+++.- +-|...+......+.+.++.++|.+.++++... .|+ ....-.+..++.+.|++.+|+.++++....
T Consensus 329 l~~L~~~~---P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~ 403 (484)
T COG4783 329 LQPLIAAQ---PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN 403 (484)
T ss_pred HHHHHHhC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Confidence 99988863 567777788889999999999999999999884 566 456667778999999999999999998775
Q ss_pred CCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC--CccCHHH
Q 010830 391 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR--ILIYEVT 468 (499)
Q Consensus 391 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~ 468 (499)
. +-|+..|..|.++|...|+..++.....+ +|...|++++|...+....+.. -.|+..-
T Consensus 404 ~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR 464 (484)
T COG4783 404 D-PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQQVKLGFPDWAR 464 (484)
T ss_pred C-CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4 55788999999999999998887765443 4566799999999888887652 2334444
Q ss_pred HHHHHHHH
Q 010830 469 MHKLKKAF 476 (499)
Q Consensus 469 ~~~ll~~~ 476 (499)
+...|...
T Consensus 465 ~dari~~~ 472 (484)
T COG4783 465 ADARIDQL 472 (484)
T ss_pred HHHHHHHH
Confidence 44444443
No 120
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.52 E-value=6.5e-05 Score=76.43 Aligned_cols=167 Identities=11% Similarity=0.137 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHH
Q 010830 182 VVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFL 261 (499)
Q Consensus 182 ~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li 261 (499)
...+..|+..+... +++++|.++.+...+..+.....|-.+...+.+.++.+++..+ . ++
T Consensus 31 ~~a~~~Li~~~~~~-~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~-----------------~l 90 (906)
T PRK14720 31 FKELDDLIDAYKSE-NLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--N-----------------LI 90 (906)
T ss_pred HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--h-----------------hh
Confidence 44455556655555 6666666666644443333333444433345555554433333 1 22
Q ss_pred HHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCC
Q 010830 262 ITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341 (499)
Q Consensus 262 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 341 (499)
.......++..+.-+...|.+.+ -+...+..+..+|-+.|+.+++..+|+++++.. +-|..+.|.+...|... +
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D---~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD---RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHh-h
Confidence 22222233333333333444332 233456667777777788888888888777765 45677777777777777 7
Q ss_pred hHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010830 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389 (499)
Q Consensus 342 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 389 (499)
+++|.+++.+.... +...+++..+.++|.++..
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~ 197 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH 197 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHh
Confidence 77777777766652 3444455555555555554
No 121
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.51 E-value=4.6e-05 Score=73.47 Aligned_cols=233 Identities=13% Similarity=0.099 Sum_probs=179.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 010830 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228 (499)
Q Consensus 149 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~ 228 (499)
.-..+...+...|-...|..+|+++. .|.-++.+|+.. |+..+|..+..+..+ -+||...|..+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~l-g~~~kaeei~~q~le-k~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLL-GQHGKAEEINRQELE-KDPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHh-cccchHHHHHHHHhc-CCCcchhHHHhhhhcc
Confidence 34467788899999999999999875 466678888888 889999888777655 5789999999999988
Q ss_pred hcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHH
Q 010830 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHA 308 (499)
Q Consensus 229 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 308 (499)
...-+++|.++++....+ +-..+.......++++++.+.|+.-.+.. ..-..+|-..-.+..+.+++..|
T Consensus 469 d~s~yEkawElsn~~sar---------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR---------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ChHHHHHHHHHhhhhhHH---------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHH
Confidence 888899999999887443 22223333445799999999998765543 23456777788888899999999
Q ss_pred HHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010830 309 VQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388 (499)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 388 (499)
.+.|....... +-+...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|..-+-...+.|.+++|.+.+.++.
T Consensus 539 v~aF~rcvtL~---Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 539 VKAFHRCVTLE---PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHHhhcC---CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 99999988753 3467899999999999999999999999999876 3455667777777889999999999999887
Q ss_pred HCC-CCCChhhHHHHHHHH
Q 010830 389 KNE-WQPTPLNCATAITML 406 (499)
Q Consensus 389 ~~~-~~p~~~~~~~li~~~ 406 (499)
+.. ..-|......++...
T Consensus 615 ~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 615 DLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HhhhhcccchhhHHHHHHH
Confidence 641 112444444444443
No 122
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.50 E-value=0.00011 Score=73.28 Aligned_cols=186 Identities=12% Similarity=-0.000 Sum_probs=137.8
Q ss_pred CCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010830 93 DSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172 (499)
Q Consensus 93 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 172 (499)
.+...|+..|-...+....=...|..|...|+...+...|.+.|+...+.+.-+...+....+.|++..+++.|..+.-.
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 45666666666555555555678999999999999999999999999999888888999999999999999999998433
Q ss_pred HHhCC-CCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCC
Q 010830 173 MSMHG-VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251 (499)
Q Consensus 173 m~~~g-~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 251 (499)
.-+.. ...-...|...--.+.+. ++...+...|+...+..+.|...|..+..+|.++|.+..|.++|.+.. -+.|
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea-~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs---~LrP 627 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEA-HNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKAS---LLRP 627 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCc-cchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhH---hcCc
Confidence 22211 001112222222234455 888899999998888778899999999999999999999999999884 4577
Q ss_pred chHHhHHHHHHHHhcCCCHHHHHHHHHHHhh
Q 010830 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKG 282 (499)
Q Consensus 252 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 282 (499)
.+...-.-..-.-+..|.+.+|+..+.....
T Consensus 628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 628 LSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 5543333344455667888888888876543
No 123
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.50 E-value=3.2e-05 Score=65.50 Aligned_cols=118 Identities=12% Similarity=0.179 Sum_probs=63.5
Q ss_pred CchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHH-hcCCC--HHHH
Q 010830 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL-IRGKQ--VDEA 273 (499)
Q Consensus 197 ~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~-~~~~~--~~~a 273 (499)
++.+++...++...+..+.|...|..+...|...|++++|...|++..+ +.|++...+..+..++ ...|+ .++|
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 4445555555554444455566666666666666666666666665533 3555555555555542 44444 3566
Q ss_pred HHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 010830 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI 318 (499)
Q Consensus 274 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 318 (499)
.+++++..+.+- -+...+..+...+.+.|++++|+..|+.+.+.
T Consensus 130 ~~~l~~al~~dP-~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDA-NEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 666655555441 13444445555555555555555555555554
No 124
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.47 E-value=8.3e-05 Score=74.86 Aligned_cols=238 Identities=8% Similarity=0.032 Sum_probs=154.2
Q ss_pred CCHHHHHHHHHHHHhCCChHHHH-HHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 010830 111 LSPYAWNLMVDVLGKNGRFEQMW-NAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLL 189 (499)
Q Consensus 111 ~~~~~~~~li~~~~~~~~~~~a~-~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 189 (499)
.++...+.+=.+.+.-|..++|- ++..+.. .++....+.....+++.-.....+. ...+...+-.|.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~La 93 (694)
T PRK15179 26 SGPTILDLLEAALAEPGESEEAGRELLQQAR-----------QVLERHAAVHKPAAALPELLDYVRR-YPHTELFQVLVA 93 (694)
T ss_pred CCcHHHhHHHHHhcCcccchhHHHHHHHHHH-----------HHHHHhhhhcchHhhHHHHHHHHHh-ccccHHHHHHHH
Confidence 34444444445555556665552 3333322 2333333333333333333333322 234466677777
Q ss_pred HHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCC
Q 010830 190 SAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269 (499)
Q Consensus 190 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~ 269 (499)
....+. |.+++|+.+++....-.+.+......+...+.+.+++++|...+++... ..|++......+..++.+.|+
T Consensus 94 ~i~~~~-g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~~a~~l~~~g~ 169 (694)
T PRK15179 94 RALEAA-HRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILLEAKSWDEIGQ 169 (694)
T ss_pred HHHHHc-CCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHhcc
Confidence 777777 8888998888888776677778888888888888899998888888854 478888888888888888899
Q ss_pred HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHH
Q 010830 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349 (499)
Q Consensus 270 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 349 (499)
+++|..+|++....+ .-+..++..+-.++-+.|+.++|...|+...+.. .+...-|+.++. +...-..++
T Consensus 170 ~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~---~~~~~~~~~~~~------~~~~~~~~~ 239 (694)
T PRK15179 170 SEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI---GDGARKLTRRLV------DLNADLAAL 239 (694)
T ss_pred hHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh---CcchHHHHHHHH------HHHHHHHHH
Confidence 999999998888743 2346788888888888889999988888888763 455566655543 233344555
Q ss_pred HHHHHC----CCCCCHHhHHHHHHHHHhc
Q 010830 350 DQMVFH----GAFPDSLTYNMIFECLIKN 374 (499)
Q Consensus 350 ~~m~~~----g~~p~~~~~~~ll~~~~~~ 374 (499)
+++.-. |....+.....+|..|.+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 240 RRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 555433 2333344555666655543
No 125
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.44 E-value=1.2e-05 Score=68.05 Aligned_cols=118 Identities=11% Similarity=0.149 Sum_probs=67.1
Q ss_pred CCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHH-HccCCc--hHHH
Q 010830 126 NGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI-CRQENQ--TSRA 202 (499)
Q Consensus 126 ~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~~~~--~~~a 202 (499)
.++.+++...++...+.++.+...|..+...|...|++++|...|+...+.. +-+...+..+-.++ ... |+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~-g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQA-GQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhc-CCCCcHHH
Confidence 4455555555666666555566666666666666666666666666655542 22344444444432 333 43 3666
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 010830 203 LEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245 (499)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 245 (499)
..++++..+..+.+...+..+...+.+.|++++|...|+++.+
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666666555555566666666666666666666666666644
No 126
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.43 E-value=0.0012 Score=64.06 Aligned_cols=108 Identities=15% Similarity=0.092 Sum_probs=60.1
Q ss_pred HHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhH
Q 010830 335 LLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 414 (499)
Q Consensus 335 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 414 (499)
+-....++.+|+.+++.+...+ .-..-|..+...|...|+++.|+++|.+. + .++-.|..|.+.|+|+.
T Consensus 741 aai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---~------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---D------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---c------hhHHHHHHHhccccHHH
Confidence 3344556666666666665532 12334556666677777777777666543 1 23445666677777777
Q ss_pred HHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHH
Q 010830 415 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 455 (499)
Q Consensus 415 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 455 (499)
|.++-.+.. |.......|-+-..-+-++|++.+|.+++-
T Consensus 810 a~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 810 AFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred HHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 666655432 223333444444444566677777666653
No 127
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.38 E-value=0.00035 Score=67.61 Aligned_cols=43 Identities=21% Similarity=0.152 Sum_probs=19.2
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHH
Q 010830 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 418 (499)
Q Consensus 367 ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 418 (499)
+..-+-..|++..|+.-|-+.. -|.+-++.|-..+.|++|.++
T Consensus 888 f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 888 FAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred HHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHH
Confidence 3344444555555554443321 123334444445555555444
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.38 E-value=0.00016 Score=66.75 Aligned_cols=117 Identities=13% Similarity=0.093 Sum_probs=64.2
Q ss_pred CchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHH
Q 010830 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276 (499)
Q Consensus 197 ~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~ 276 (499)
|+.+.|+..++.+....+.|...+....+.+.+.++.++|.+.++.+... .|+....+-.+..+|.+.|++++|+.+
T Consensus 320 ~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~g~~~eai~~ 396 (484)
T COG4783 320 GQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKGGKPQEAIRI 396 (484)
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhcCChHHHHHH
Confidence 55555666655555555555555555555566666666666666555332 443444455555556666666666655
Q ss_pred HHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 010830 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317 (499)
Q Consensus 277 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 317 (499)
++...... +-|...|..|..+|...|+..++..-..+...
T Consensus 397 L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 397 LNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 55554432 33455555555666555555555555544443
No 129
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.37 E-value=8.6e-05 Score=74.76 Aligned_cols=185 Identities=10% Similarity=0.017 Sum_probs=140.3
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHH
Q 010830 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAV 185 (499)
Q Consensus 106 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 185 (499)
.+.+..++..+-.|..+..+.|.+++|..+++...+..+.+...+..+...+.+.+++++|+..++..... .|+..+.
T Consensus 79 ~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~ 156 (694)
T PRK15179 79 VRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSARE 156 (694)
T ss_pred HHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHH
Confidence 34678889999999999999999999999999999999989999999999999999999999999999877 6766665
Q ss_pred HHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHh
Q 010830 186 NSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265 (499)
Q Consensus 186 ~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~ 265 (499)
..+...+....|++++|..+|+++....+.+..++..+...+.+.|+.++|...|+...+. ..+ ....|+..+
T Consensus 157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~--~~~-~~~~~~~~~---- 229 (694)
T PRK15179 157 ILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA--IGD-GARKLTRRL---- 229 (694)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--hCc-chHHHHHHH----
Confidence 5555544444499999999999998755666889999999999999999999999998764 222 334444433
Q ss_pred cCCCHHHHHHHHHHHhhCCCC----CCHhhHHHHHHHHHH
Q 010830 266 RGKQVDEALKFLRVMKGENCF----PTLKFFSNALDILVK 301 (499)
Q Consensus 266 ~~~~~~~a~~~~~~m~~~~~~----p~~~~~~~li~~~~~ 301 (499)
++...-..+++++.-++.. ........+|..|.+
T Consensus 230 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (694)
T PRK15179 230 --VDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGR 267 (694)
T ss_pred --HHHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhh
Confidence 2334445566665544322 223334444444443
No 130
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.36 E-value=4.7e-05 Score=60.93 Aligned_cols=47 Identities=11% Similarity=0.072 Sum_probs=18.0
Q ss_pred CchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010830 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243 (499)
Q Consensus 197 ~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 243 (499)
|++++|...|+......+.+...+..+..++.+.|+.++|...|+..
T Consensus 72 g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~A 118 (144)
T PRK15359 72 KEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTA 118 (144)
T ss_pred hhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33333333333333322333333333333444444444444444443
No 131
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.30 E-value=3.3e-05 Score=61.80 Aligned_cols=91 Identities=10% Similarity=-0.007 Sum_probs=43.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCc
Q 010830 119 MVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198 (499)
Q Consensus 119 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 198 (499)
+...+...|++++|...|+.....++.+...|..+...+...|++++|...|+...+.. +.+...+..+-.++... |+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~-g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMM-GE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHc-CC
Confidence 34444445555555555555554444444555555555555555555555555544432 22334444444444444 55
Q ss_pred hHHHHHHHHHHhc
Q 010830 199 TSRALEFLNRVKK 211 (499)
Q Consensus 199 ~~~a~~~~~~~~~ 211 (499)
.++|...|+...+
T Consensus 108 ~~eAi~~~~~Al~ 120 (144)
T PRK15359 108 PGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554433
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.26 E-value=5.7e-05 Score=59.97 Aligned_cols=92 Identities=15% Similarity=0.113 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHh
Q 010830 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK 229 (499)
Q Consensus 150 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~ 229 (499)
...+...+...|++++|.+.|+.+...+ +.+...+..+...+... |++++|..+++...+..+.+...+..+...|..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQML-KEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 3333444444444444444444443322 22233333333333333 444444444444333333333444444444444
Q ss_pred cCCHHHHHHHHHHH
Q 010830 230 EGNVEEANKTFGEM 243 (499)
Q Consensus 230 ~g~~~~a~~~~~~~ 243 (499)
.|++++|.+.|+..
T Consensus 98 ~g~~~~A~~~~~~a 111 (135)
T TIGR02552 98 LGEPESALKALDLA 111 (135)
T ss_pred cCCHHHHHHHHHHH
Confidence 44444444444444
No 133
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=0.0011 Score=55.99 Aligned_cols=83 Identities=10% Similarity=0.192 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHH
Q 010830 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFR 347 (499)
Q Consensus 268 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 347 (499)
|++++|+++++.+.+.+ +.|..++.-=+-..-..|+.-+|++-+....+. +.-|...|.-+...|...|++++|.-
T Consensus 100 ~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~---F~~D~EAW~eLaeiY~~~~~f~kA~f 175 (289)
T KOG3060|consen 100 GNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK---FMNDQEAWHELAEIYLSEGDFEKAAF 175 (289)
T ss_pred hchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHhHhHHHHHHH
Confidence 44444444444444333 223333333333333334444444444444333 34455555555555555555555555
Q ss_pred HHHHHHH
Q 010830 348 FFDQMVF 354 (499)
Q Consensus 348 ~~~~m~~ 354 (499)
.++++.-
T Consensus 176 ClEE~ll 182 (289)
T KOG3060|consen 176 CLEELLL 182 (289)
T ss_pred HHHHHHH
Confidence 5555554
No 134
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.21 E-value=2.2e-06 Score=49.66 Aligned_cols=33 Identities=33% Similarity=0.673 Sum_probs=17.0
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC
Q 010830 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPD 360 (499)
Q Consensus 328 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 360 (499)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 345555555555555555555555555555544
No 135
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.21 E-value=2.2e-06 Score=49.68 Aligned_cols=33 Identities=33% Similarity=0.429 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCccC
Q 010830 433 SANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 465 (499)
Q Consensus 433 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~ 465 (499)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 678888888888888888888888888888776
No 136
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.21 E-value=5.8e-05 Score=70.22 Aligned_cols=127 Identities=17% Similarity=0.148 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 010830 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226 (499)
Q Consensus 147 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~ 226 (499)
...-..|+..+...++++.|.++|+++.+. .|+. ...+...+... ++..+|.+++++..+..+.+..........
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~--~pev--~~~LA~v~l~~-~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRER--DPEV--AVLLARVYLLM-NEEVEAIRLLNEALKENPQDSELLNLQAEF 243 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhc--CCcH--HHHHHHHHHhc-CcHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 345556777778888999999999999866 3553 44466777666 778888888888777666778888888888
Q ss_pred HHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHh
Q 010830 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281 (499)
Q Consensus 227 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 281 (499)
+.+.++.+.|+++.++..+ ..|++..+|..|..+|.+.|+++.|+-.++.+-
T Consensus 244 Ll~k~~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHhcCCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999954 488888899999999999999999998888764
No 137
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.18 E-value=0.0067 Score=61.24 Aligned_cols=176 Identities=13% Similarity=0.023 Sum_probs=103.5
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHhhcC---CchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 010830 68 IESALACTGIIPTPDLVHEVLQLSYD---SPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV 144 (499)
Q Consensus 68 l~~~l~~~~~~~~~~~~~~~l~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 144 (499)
+++.++...+.++-...-..|...+. +...|.+.|+.+-+....+...+....+.|++..+++.|..+.-..-+..+
T Consensus 478 l~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~ 557 (1238)
T KOG1127|consen 478 LHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAP 557 (1238)
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhch
Confidence 44444444444443333333332222 556788888888778888899999999999999999999888433333322
Q ss_pred CCH--HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHH
Q 010830 145 LSL--PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222 (499)
Q Consensus 145 ~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 222 (499)
.-. ..|..+.-.|.+.++...|...|+...+.. +-|...|..+..+|.+. |.+..|.++|.+...-.+.+...-.-
T Consensus 558 a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~s-Gry~~AlKvF~kAs~LrP~s~y~~fk 635 (1238)
T KOG1127|consen 558 AFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPES-GRYSHALKVFTKASLLRPLSKYGRFK 635 (1238)
T ss_pred HHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhc-CceehHHHhhhhhHhcCcHhHHHHHH
Confidence 111 123334445666667777777777666543 34566667777777777 77777777776654422222222222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhH
Q 010830 223 LLEGWEKEGNVEEANKTFGEMVE 245 (499)
Q Consensus 223 ll~~~~~~g~~~~a~~~~~~~~~ 245 (499)
..-.-+..|.+.+|...+..+..
T Consensus 636 ~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 636 EAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 23334455666666666555533
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.17 E-value=0.00011 Score=58.44 Aligned_cols=103 Identities=10% Similarity=0.075 Sum_probs=69.4
Q ss_pred CCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHH
Q 010830 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN 186 (499)
Q Consensus 107 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 186 (499)
...+.+......+...+.+.|++++|.+.|+.+...++.+...|..+...+...|++++|..+++...+.+ +.+...+.
T Consensus 11 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~ 89 (135)
T TIGR02552 11 GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYF 89 (135)
T ss_pred cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHH
Confidence 33444455566666777777777777777777777666667777777777777777777777777766553 33455555
Q ss_pred HHHHHHHccCCchHHHHHHHHHHhc
Q 010830 187 SLLSAICRQENQTSRALEFLNRVKK 211 (499)
Q Consensus 187 ~ll~~~~~~~~~~~~a~~~~~~~~~ 211 (499)
.+-..+... |+++.|...|+...+
T Consensus 90 ~la~~~~~~-g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 90 HAAECLLAL-GEPESALKALDLAIE 113 (135)
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHHH
Confidence 555566666 777777777776655
No 139
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.17 E-value=3.3e-05 Score=72.10 Aligned_cols=123 Identities=17% Similarity=0.157 Sum_probs=85.3
Q ss_pred CCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHC--CCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHH
Q 010830 357 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN--EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 434 (499)
Q Consensus 357 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 434 (499)
...+......+++.+....+++++..++.+.... ....-..|..++++.|.+.|..+.+.++++.=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3445566666666666666777777777776654 22222345567777777777777777777777777777777777
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhc
Q 010830 435 NELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 479 (499)
Q Consensus 435 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 479 (499)
|.||+.+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777777777766666667777666666665
No 140
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.17 E-value=3.1e-06 Score=48.63 Aligned_cols=33 Identities=30% Similarity=0.490 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc
Q 010830 148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQ 180 (499)
Q Consensus 148 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 180 (499)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467788888888888888888888887777766
No 141
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=0.0018 Score=54.79 Aligned_cols=129 Identities=14% Similarity=0.099 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 010830 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228 (499)
Q Consensus 149 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~ 228 (499)
.|..++-+....|+.+.|..+++.+... .|...-...+=..+....|.+++|.++++.+.+..+.|..++.--+...-
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHH
Confidence 3444444555556666666666665443 23333222222233333355666666666655555555555555444444
Q ss_pred hcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhh
Q 010830 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282 (499)
Q Consensus 229 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 282 (499)
..|+--+|++-+....+. -+.|...|.-+...|...|++++|.-.++++.-
T Consensus 132 a~GK~l~aIk~ln~YL~~---F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDK---FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HcCCcHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 555555555555555433 333555666666666666666666666655554
No 142
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.14 E-value=4.5e-06 Score=47.92 Aligned_cols=33 Identities=18% Similarity=0.183 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCcc
Q 010830 432 ASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 464 (499)
Q Consensus 432 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p 464 (499)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777665
No 143
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.10 E-value=0.014 Score=58.31 Aligned_cols=214 Identities=9% Similarity=0.045 Sum_probs=146.4
Q ss_pred hHHHHHHhcCCCCCHHHHHHHHHhhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC
Q 010830 67 DIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS 146 (499)
Q Consensus 67 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 146 (499)
.+...++++|..+....+.++.....|+.++|..+++........|..+...+-..|...++.++|..+|++.....+.
T Consensus 31 ~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~- 109 (932)
T KOG2053|consen 31 KLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS- 109 (932)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-
Confidence 3556677888888888888888888999999998888776655569999999999999999999999999999988654
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCch---------HHHHHHHHHHhc--cCCC
Q 010830 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQT---------SRALEFLNRVKK--IVDP 215 (499)
Q Consensus 147 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~---------~~a~~~~~~~~~--~~~~ 215 (499)
..-...+..+|++.+.+.+-.+.=-+|-+. ++-+.+.+=++++.+....... .-|.+.++.+.+ |-.-
T Consensus 110 eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~ 188 (932)
T KOG2053|consen 110 EELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIE 188 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccc
Confidence 778888889999998877655554444332 2334555555555554331222 234444554433 2111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHH-HHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 010830 216 DGDSFAILLEGWEKEGNVEEANKTFG-EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284 (499)
Q Consensus 216 ~~~~~~~ll~~~~~~g~~~~a~~~~~-~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 284 (499)
+..-...........|++++|.+++. ...+. ..+.+...-+.-+..+...++|.+..++-.++...|
T Consensus 189 s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~--l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 189 SEAEIILYLLILELQGKYQEALEFLAITLAEK--LTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh--ccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 22222333445567888999999984 33332 233344445566777788888888888888888776
No 144
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.08 E-value=5.6e-05 Score=55.12 Aligned_cols=79 Identities=15% Similarity=0.280 Sum_probs=54.5
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHCCC-CChHHHHHHHHHHHHhCC--------ChHHHHHHHHHHHHcCCccCHHHHHH
Q 010830 401 TAITMLLDADEPEIAIEIWNYILENGI-LPLEASANELLVGLRNLG--------RLSDVRRFAEEMLNRRILIYEVTMHK 471 (499)
Q Consensus 401 ~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~g--------~~~~a~~~~~~m~~~~~~p~~~~~~~ 471 (499)
..|..|...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-+.+.+++.|+..+++|+..||+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 345555555777777777777777777 677777777776665542 23356677778888788888888888
Q ss_pred HHHHHHhc
Q 010830 472 LKKAFYNE 479 (499)
Q Consensus 472 ll~~~~~~ 479 (499)
++.++.+.
T Consensus 110 vl~~Llkg 117 (120)
T PF08579_consen 110 VLGSLLKG 117 (120)
T ss_pred HHHHHHHh
Confidence 88777653
No 145
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.07 E-value=7.6e-05 Score=69.73 Aligned_cols=134 Identities=13% Similarity=0.248 Sum_probs=97.8
Q ss_pred HHHHHhHccCC-CCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC--CCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHH
Q 010830 239 TFGEMVERFEW-NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE--NCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315 (499)
Q Consensus 239 ~~~~~~~~~~~-~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 315 (499)
++..|.++++- .|-+......+++.+....+.+.+..++.+.+.. ....-..|..++|+.|.+.|..+.+..+++.=
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~ 129 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR 129 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence 45555443222 2435567777888888888888888888777654 22233455668888888888888888888888
Q ss_pred HhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 010830 316 VGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN 374 (499)
Q Consensus 316 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 374 (499)
...| +-||..++|.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 130 ~~yG--iF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 130 LQYG--IFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhcc--cCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888 88888888888888888888888888888887776666777777777666655
No 146
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.06 E-value=0.00019 Score=66.82 Aligned_cols=124 Identities=14% Similarity=0.128 Sum_probs=84.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 010830 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299 (499)
Q Consensus 220 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 299 (499)
...++..+...++++.|.++|+++.+. .| .....++..+...++-.+|.+++++..... +-+......-...|
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~p---ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DP---EVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CC---cHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344566666677888888888888765 34 244557777777777778888777776543 23455555556667
Q ss_pred HHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 010830 300 VKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353 (499)
Q Consensus 300 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 353 (499)
.+.++.+.|.++.+++.+.. +-+..+|..|..+|.+.|+++.|+..++.+.
T Consensus 245 l~k~~~~lAL~iAk~av~ls---P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELS---PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhC---chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77777788887777777753 3345577778888888888888877777654
No 147
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.05 E-value=0.00049 Score=55.26 Aligned_cols=125 Identities=17% Similarity=0.191 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCH--HHHHHHH
Q 010830 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSL---PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDV--VAVNSLL 189 (499)
Q Consensus 115 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll 189 (499)
.|..++..+ ..++...+...++.+......+. ...-.+...+...|++++|...|+........++. ...-.|.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344444444 36666666666666666654442 23333445666667777777777666655311211 1222233
Q ss_pred HHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010830 190 SAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242 (499)
Q Consensus 190 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 242 (499)
..+... |++++|+..++.... .......+....+.|.+.|+.++|...|+.
T Consensus 93 ~~~~~~-~~~d~Al~~L~~~~~-~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQ-GQYDEALATLQQIPD-EAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHc-CCHHHHHHHHHhccC-cchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 444444 555555555544322 112233444455555555555555555543
No 148
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.98 E-value=0.00054 Score=55.02 Aligned_cols=117 Identities=14% Similarity=0.085 Sum_probs=47.7
Q ss_pred cCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCH--hhHHHHHHHHHHcCCHhH
Q 010830 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL--KFFSNALDILVKLNDSTH 307 (499)
Q Consensus 230 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~~~~~~ 307 (499)
.++...+...++.+.+.++-.+-.....-.+...+...|++++|...|+........++. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 445555555555554431111111222223334444555555555555555443311111 112223344444455555
Q ss_pred HHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHH
Q 010830 308 AVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350 (499)
Q Consensus 308 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 350 (499)
|...++...... .....+......|.+.|+.++|...|+
T Consensus 104 Al~~L~~~~~~~----~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 104 ALATLQQIPDEA----FKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHhccCcc----hHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 555443322211 123334444444555555555555444
No 149
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.98 E-value=0.00011 Score=53.55 Aligned_cols=75 Identities=16% Similarity=0.390 Sum_probs=39.6
Q ss_pred HHHHHcCCChHHHHHHHHHHHHCCC-CCCHHhHHHHHHHHHhcC--------CHhHHHHHHHHHHHCCCCCChhhHHHHH
Q 010830 333 IGLLCNNDDVDNVFRFFDQMVFHGA-FPDSLTYNMIFECLIKNK--------RVHEVEKFFHEMIKNEWQPTPLNCATAI 403 (499)
Q Consensus 333 i~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g--------~~~~a~~~~~~~~~~~~~p~~~~~~~li 403 (499)
|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-+.+.+|++|+..+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3344444555555556666665555 555566665555554432 1223445555555555555555555555
Q ss_pred HHHh
Q 010830 404 TMLL 407 (499)
Q Consensus 404 ~~~~ 407 (499)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 5443
No 150
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.96 E-value=0.014 Score=53.30 Aligned_cols=126 Identities=16% Similarity=0.133 Sum_probs=88.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 010830 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 407 (499)
Q Consensus 328 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 407 (499)
+.+..|.-+...|+...|.++-.+.. .|+..-|...+.+++..++|++-.++... +-++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44555666777788877777765553 37888899999999999999887765432 224577888999999
Q ss_pred ccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhc
Q 010830 408 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 479 (499)
Q Consensus 408 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 479 (499)
+.|+..+|..+...+ .+..-+..|.++|++.+|.+...+.. |...+..+.+.+-..
T Consensus 249 ~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~k------d~~~L~~i~~~~~~~ 304 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKEK------DIDLLKQILKRCPGN 304 (319)
T ss_pred HCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHcC------CHHHHHHHHHHCCCC
Confidence 999988888887762 12455777888999998877654443 455555555544433
No 151
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.94 E-value=0.011 Score=52.00 Aligned_cols=184 Identities=9% Similarity=0.070 Sum_probs=102.6
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHH---HHHHHHHHhcCChhHHHHHHHHHHhCC-CCcCHHHHHH
Q 010830 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTF---ASIFDSYCGAGKYDEAVMSFDVMSMHG-VEQDVVAVNS 187 (499)
Q Consensus 112 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ 187 (499)
+...+-.....+...|++++|.+.|+.+....+-+...- -.++.++.+.+++++|...+++..+.- -.|+. .+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHHH
Confidence 444444455666778999999999999988776554433 456778889999999999999887662 12222 3333
Q ss_pred HHHHHHcc----------------CCchH---HHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccC
Q 010830 188 LLSAICRQ----------------ENQTS---RALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFE 248 (499)
Q Consensus 188 ll~~~~~~----------------~~~~~---~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 248 (499)
.+.+.+.. ..|.. .|+..|+ .+++-|=...-..+|.+.+..+..+
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~--------------~li~~yP~S~ya~~A~~rl~~l~~~-- 173 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFS--------------KLVRGYPNSQYTTDATKRLVFLKDR-- 173 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHH--------------HHHHHCcCChhHHHHHHHHHHHHHH--
Confidence 33333311 00111 1222222 2333333333344454444444332
Q ss_pred CCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC--CCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHH
Q 010830 249 WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE--NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV 316 (499)
Q Consensus 249 ~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 316 (499)
-...--.+...|.+.|.+..|..-++.+.+. +..........++.+|.+.|..++|.++...+.
T Consensus 174 ----la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 ----LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred ----HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1112224455567777777777777766653 223334455566666767777766666555443
No 152
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.90 E-value=1.4e-05 Score=44.63 Aligned_cols=29 Identities=24% Similarity=0.452 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 010830 433 SANELLVGLRNLGRLSDVRRFAEEMLNRR 461 (499)
Q Consensus 433 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 461 (499)
+|+.++++|++.|++++|.+++++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666677777777777777777666655
No 153
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.88 E-value=1.9e-05 Score=44.12 Aligned_cols=29 Identities=28% Similarity=0.579 Sum_probs=14.3
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHCC
Q 010830 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHG 356 (499)
Q Consensus 328 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g 356 (499)
+|+++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34455555555555555555555554443
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.86 E-value=0.00079 Score=51.88 Aligned_cols=100 Identities=11% Similarity=-0.036 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCC--CCCHhhHHHHH
Q 010830 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC--FPTLKFFSNAL 296 (499)
Q Consensus 219 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~li 296 (499)
++..+...+.+.|++++|.+.|+.+.+...-.+.....+..+..++.+.|++++|.+.|+.+....- ......+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445555566666666666666666543111111123455566666666666666666666554321 11123444555
Q ss_pred HHHHHcCCHhHHHHHHHHHHhc
Q 010830 297 DILVKLNDSTHAVQLWDIMVGI 318 (499)
Q Consensus 297 ~~~~~~~~~~~a~~~~~~~~~~ 318 (499)
.++.+.|+.+.|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 5556666666666666666654
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.84 E-value=0.00067 Score=52.31 Aligned_cols=58 Identities=17% Similarity=0.168 Sum_probs=25.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010830 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVLS---LPTFASIFDSYCGAGKYDEAVMSFDVMS 174 (499)
Q Consensus 117 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~ 174 (499)
..+...+.+.|++++|.+.|+.+.+..+.+ ...+..+...+.+.|+++.|.+.|+.+.
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 66 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVV 66 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 334444444455555555554444433211 2233344444444444444444444443
No 156
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.81 E-value=0.024 Score=51.29 Aligned_cols=321 Identities=10% Similarity=0.027 Sum_probs=203.7
Q ss_pred HHHHHhhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHh--CCChHHHHHHHHHHHhCCCCCHHHHHHHHHH--HHhc
Q 010830 85 HEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGK--NGRFEQMWNAVRVMKEDGVLSLPTFASIFDS--YCGA 160 (499)
Q Consensus 85 ~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~--~~~~ 160 (499)
..+++.....+..+.+.|...++ ...|.+|-.++.. .|+-..|.++-.+-.+.-..|......|+.+ -.-.
T Consensus 59 wwlv~~iw~sP~t~~Ryfr~rKR-----drgyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~e 133 (531)
T COG3898 59 WWLVRSIWESPYTARRYFRERKR-----DRGYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLE 133 (531)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHh-----hhHHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhc
Confidence 33444556788888999986644 2356666665554 4788888877665543333344445555543 4457
Q ss_pred CChhHHHHHHHHHHhCCCCcCHHH--HHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010830 161 GKYDEAVMSFDVMSMHGVEQDVVA--VNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANK 238 (499)
Q Consensus 161 g~~~~A~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 238 (499)
|++++|.+-|+.|.. .|.... ...|.-..-+. |+.+.|..+-+..-..-+--...+...+...+..|+++.|++
T Consensus 134 G~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~-GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~Alk 209 (531)
T COG3898 134 GDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRL-GAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALK 209 (531)
T ss_pred CchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhc-ccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHH
Confidence 999999999999975 233222 12222233345 899999998888766555567888899999999999999999
Q ss_pred HHHHHhHccCCCCchHHh-HHHHHHHH---hcCCCHHHHHHHHHHHhhCCCCCCHh-hHHHHHHHHHHcCCHhHHHHHHH
Q 010830 239 TFGEMVERFEWNPEHVLA-YETFLITL---IRGKQVDEALKFLRVMKGENCFPTLK-FFSNALDILVKLNDSTHAVQLWD 313 (499)
Q Consensus 239 ~~~~~~~~~~~~p~~~~~-~~~li~~~---~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~ 313 (499)
+++.-.+..-+.++-..- -..|+.+- .-..+...|...-.+..+ +.||.. .-.....++.+.|+..++-.+++
T Consensus 210 Lvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE 287 (531)
T COG3898 210 LVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILE 287 (531)
T ss_pred HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHH
Confidence 999887765555522211 11222221 112345556555444333 345532 23344678889999999999999
Q ss_pred HHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHH-CCCCC-CHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010830 314 IMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF-HGAFP-DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391 (499)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 391 (499)
.+-+.. |....+.. ..+.+.|+. ++.-+++... ...+| +..+.-.+..+-...|++..|..--+...+
T Consensus 288 ~aWK~e----PHP~ia~l--Y~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r-- 357 (531)
T COG3898 288 TAWKAE----PHPDIALL--YVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR-- 357 (531)
T ss_pred HHHhcC----CChHHHHH--HHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--
Confidence 998854 55554433 234555653 2222332222 11344 445666777788888999888877666655
Q ss_pred CCCChhhHHHHHHHHh-ccCChhHHHHHHHHHHHCC
Q 010830 392 WQPTPLNCATAITMLL-DADEPEIAIEIWNYILENG 426 (499)
Q Consensus 392 ~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~~ 426 (499)
..|....|..|.+.-. ..|+-.++...+.+..+..
T Consensus 358 ~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 358 EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 4578888888877654 4599999999988887643
No 157
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.80 E-value=0.00037 Score=62.72 Aligned_cols=129 Identities=14% Similarity=0.151 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 010830 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHG-VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW 227 (499)
Q Consensus 149 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~ 227 (499)
+|..+++...+.+..+.|..+|.+..+.+ +..++....++|..++ . ++.+.|..+|+...+.+..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~-~-~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYC-N-KDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHT-C-S-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh-C-CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 45555555555555666666666655432 1233333333333322 1 4455566666665555555666666666666
Q ss_pred HhcCCHHHHHHHHHHHhHccCCCCchH---HhHHHHHHHHhcCCCHHHHHHHHHHHhh
Q 010830 228 EKEGNVEEANKTFGEMVERFEWNPEHV---LAYETFLITLIRGKQVDEALKFLRVMKG 282 (499)
Q Consensus 228 ~~~g~~~~a~~~~~~~~~~~~~~p~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~ 282 (499)
.+.|+.+.|..+|++.... .|.+. ..|..++..-.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~---l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS---LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT---SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh---cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666442 22111 3555555555555666666555555544
No 158
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.80 E-value=0.00063 Score=61.28 Aligned_cols=131 Identities=12% Similarity=0.079 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 010830 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCG-AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI 192 (499)
Q Consensus 114 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 192 (499)
.+|..+++..-+.+..+.|+.+|.+.++.+..+...|......-.. .++.+.|.++|+...+. +..+...|...+..+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 5788899999999999999999999997766566667666666333 67778899999998765 355677888888888
Q ss_pred HccCCchHHHHHHHHHHhccCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHhHc
Q 010830 193 CRQENQTSRALEFLNRVKKIVDPDG---DSFAILLEGWEKEGNVEEANKTFGEMVER 246 (499)
Q Consensus 193 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 246 (499)
... ++.+.|..+|++....+.++. ..|...++.=.+.|+++.+.++.+++.+.
T Consensus 81 ~~~-~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKL-NDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHT-T-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHh-CcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888 999999999999877654443 58999999999999999999999998764
No 159
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.76 E-value=0.057 Score=54.24 Aligned_cols=222 Identities=16% Similarity=0.098 Sum_probs=155.0
Q ss_pred cCCchhHHHHHHHhcCCCC--CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010830 92 YDSPSSAVDFFRWAGRGQR--LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS 169 (499)
Q Consensus 92 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 169 (499)
.++...|+.....+.+..+ +-..++.++ .+.|.|+.++|..+++.....+..|..|...+-..|...|+.++|..+
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaL--sl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKAL--SLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHH--HHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 3455566666665544222 223333333 357889999999999998888878999999999999999999999999
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC----------CHHHHHHH
Q 010830 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG----------NVEEANKT 239 (499)
Q Consensus 170 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g----------~~~~a~~~ 239 (499)
|++.... .|+..-...+..+|++. +.+.+-.+.--++-+..+.+...+=+++..+...- -.--|.+.
T Consensus 100 Ye~~~~~--~P~eell~~lFmayvR~-~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 100 YERANQK--YPSEELLYHLFMAYVRE-KSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHhh--CCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 9999765 78877778888889988 88777666655555555566665555555554321 12346777
Q ss_pred HHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHH-HHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 010830 240 FGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR-VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI 318 (499)
Q Consensus 240 ~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~-~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 318 (499)
++.+.+..| ...+..-...-...+...|++++|++++. ...+.-..-+...-+.-++.+...+++.+..++-.++...
T Consensus 177 ~~~~l~~~g-k~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 177 VQKLLEKKG-KIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHhccCC-ccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 777777643 22233333333445566788999999994 3444433344455556778888999999999999999988
Q ss_pred C
Q 010830 319 G 319 (499)
Q Consensus 319 ~ 319 (499)
|
T Consensus 256 ~ 256 (932)
T KOG2053|consen 256 G 256 (932)
T ss_pred C
Confidence 7
No 160
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.75 E-value=0.00062 Score=56.44 Aligned_cols=106 Identities=11% Similarity=0.021 Sum_probs=57.7
Q ss_pred CCCHHhHHHHHHHHHhc-----CCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHH
Q 010830 358 FPDSLTYNMIFECLIKN-----KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 432 (499)
Q Consensus 358 ~p~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 432 (499)
..|..+|..++..|.+. |..+=....+..|.+-|+.-|..+|+.|++.+=+ |.+- |. .
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~-n 106 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PR-N 106 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cc-c
Confidence 34677777777777653 4555556666677777777777777777777654 2211 00 0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc
Q 010830 433 SANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 482 (499)
Q Consensus 433 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 482 (499)
.+..+..-| -.+-+-|++++++|...|+.||..|+..|++.|.+.+..
T Consensus 107 ~fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 107 FFQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 000000001 112234555666666666666666666666666555544
No 161
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.74 E-value=0.00065 Score=49.58 Aligned_cols=56 Identities=16% Similarity=0.246 Sum_probs=25.3
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010830 119 MVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174 (499)
Q Consensus 119 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 174 (499)
+...+...|++++|.+.++...+....+...+..+...+...|++++|.+.|+...
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 61 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455444444444433333344444444444444444444444443
No 162
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.71 E-value=0.014 Score=51.33 Aligned_cols=59 Identities=10% Similarity=0.049 Sum_probs=36.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhH---HHHHHHHhcCCCHHHHHHHHHHHhhC
Q 010830 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY---ETFLITLIRGKQVDEALKFLRVMKGE 283 (499)
Q Consensus 222 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~---~~li~~~~~~~~~~~a~~~~~~m~~~ 283 (499)
.....+.+.|++++|.+.|+++... .|.+.... -.++.++.+.+++++|...+++..+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~---yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNR---YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3444455677777777777777654 33332222 34556677777777777777776654
No 163
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.71 E-value=0.012 Score=53.25 Aligned_cols=208 Identities=13% Similarity=0.141 Sum_probs=102.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhCC--C----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHH
Q 010830 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDG--V----LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSL 188 (499)
Q Consensus 115 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 188 (499)
.|......|-..|++++|.+.|....+.. . .-...|......|.+. ++++|.+.++..
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A--------------- 100 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKA--------------- 100 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHH---------------
Confidence 33344456666677777766665543221 0 0111233333333222 444444444433
Q ss_pred HHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHhHccCCCC---chHHhHHHHHHHH
Q 010830 189 LSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE-GNVEEANKTFGEMVERFEWNP---EHVLAYETFLITL 264 (499)
Q Consensus 189 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~p---~~~~~~~~li~~~ 264 (499)
+..|... |++..|-..+.. +...|-+. |++++|.+.|++..+-+...- .-..++..+...+
T Consensus 101 ~~~y~~~-G~~~~aA~~~~~--------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 101 IEIYREA-GRFSQAAKCLKE--------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHC-T-HHHHHHHHHH--------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHhc-CcHHHHHHHHHH--------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 2344455 666555555443 34455555 777777777776644311111 0123456667777
Q ss_pred hcCCCHHHHHHHHHHHhhCCCCC-----CHh-hHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCC--CHhHHHHHHHHH
Q 010830 265 IRGKQVDEALKFLRVMKGENCFP-----TLK-FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP--NLIMYNAVIGLL 336 (499)
Q Consensus 265 ~~~~~~~~a~~~~~~m~~~~~~p-----~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~li~~~ 336 (499)
.+.|++++|.++|++....-... +.. .|...+-++...|+...|...+++.......+.. .......||.+|
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~ 245 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY 245 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence 88888888888888776543221 111 2223344555667777887777777654211211 234455556665
Q ss_pred HcC--CChHHHHHHHHHHH
Q 010830 337 CNN--DDVDNVFRFFDQMV 353 (499)
Q Consensus 337 ~~~--~~~~~a~~~~~~m~ 353 (499)
-.. ..++.++.-|+.+.
T Consensus 246 ~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 246 EEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HTT-CCCHHHHCHHHTTSS
T ss_pred HhCCHHHHHHHHHHHcccC
Confidence 432 23555555555543
No 164
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.69 E-value=0.017 Score=52.28 Aligned_cols=191 Identities=14% Similarity=0.148 Sum_probs=93.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhHcc---CCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 010830 224 LEGWEKEGNVEEANKTFGEMVERF---EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV 300 (499)
Q Consensus 224 l~~~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 300 (499)
...|-..|++++|.+.|.+..+-. +-...-...|.....+|.+. ++++|++.+++ .+..|.
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~---------------A~~~y~ 105 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEK---------------AIEIYR 105 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHH---------------HHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHH---------------HHHHHH
Confidence 345556666776666666553310 00000112233333333222 44444444433 344555
Q ss_pred HcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcC-CChHHHHHHHHHHHHC----CCCCC--HHhHHHHHHHHHh
Q 010830 301 KLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN-DDVDNVFRFFDQMVFH----GAFPD--SLTYNMIFECLIK 373 (499)
Q Consensus 301 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~----g~~p~--~~~~~~ll~~~~~ 373 (499)
+.|++..|-+.+.. +...|-.. |++++|++.|++..+. | .+. ...+..+...+.+
T Consensus 106 ~~G~~~~aA~~~~~-----------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~ 167 (282)
T PF14938_consen 106 EAGRFSQAAKCLKE-----------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYAR 167 (282)
T ss_dssp HCT-HHHHHHHHHH-----------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHH-----------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHH
Confidence 66666655444443 33445555 6777887777776542 2 111 2345566667788
Q ss_pred cCCHhHHHHHHHHHHHCCCCC-----Chh-hHHHHHHHHhccCChhHHHHHHHHHHHC--CCCC--hHHHHHHHHHHHHh
Q 010830 374 NKRVHEVEKFFHEMIKNEWQP-----TPL-NCATAITMLLDADEPEIAIEIWNYILEN--GILP--LEASANELLVGLRN 443 (499)
Q Consensus 374 ~g~~~~a~~~~~~~~~~~~~p-----~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p--~~~~~~~ll~~~~~ 443 (499)
.|++++|.++|++........ +.. .|...+-++...|+...|.+.+++.... ++.. .......|+.++-
T Consensus 168 l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~- 246 (282)
T PF14938_consen 168 LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE- 246 (282)
T ss_dssp TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH-
T ss_pred hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH-
Confidence 888888888888877643221 111 1222333455567888888888877642 2322 2344555666653
Q ss_pred CCChHH
Q 010830 444 LGRLSD 449 (499)
Q Consensus 444 ~g~~~~ 449 (499)
.||.+.
T Consensus 247 ~~D~e~ 252 (282)
T PF14938_consen 247 EGDVEA 252 (282)
T ss_dssp TT-CCC
T ss_pred hCCHHH
Confidence 344333
No 165
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.64 E-value=0.00093 Score=48.71 Aligned_cols=92 Identities=20% Similarity=0.236 Sum_probs=46.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHh
Q 010830 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK 229 (499)
Q Consensus 150 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~ 229 (499)
+..+...+...|++++|.++++...+.. +.+...+..+...+... +++++|.+.++......+.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKL-GKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 3445555556666666666666655432 12223344444444444 555555555555444333333445555555555
Q ss_pred cCCHHHHHHHHHHH
Q 010830 230 EGNVEEANKTFGEM 243 (499)
Q Consensus 230 ~g~~~~a~~~~~~~ 243 (499)
.|+.+.|...+...
T Consensus 81 ~~~~~~a~~~~~~~ 94 (100)
T cd00189 81 LGKYEEALEAYEKA 94 (100)
T ss_pred HHhHHHHHHHHHHH
Confidence 55555555555444
No 166
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.63 E-value=0.00025 Score=48.32 Aligned_cols=64 Identities=17% Similarity=0.209 Sum_probs=51.6
Q ss_pred HhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 010830 124 GKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLL 189 (499)
Q Consensus 124 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 189 (499)
.+.|++++|+++|+.+....+.+...+..+..+|.+.|++++|.++++.+... .|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 46788999999999998888888888888999999999999999999888776 56655555554
No 167
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.62 E-value=0.0021 Score=50.85 Aligned_cols=93 Identities=10% Similarity=-0.051 Sum_probs=48.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHH
Q 010830 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301 (499)
Q Consensus 222 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 301 (499)
.+...+...|++++|.++|+.+.. +.|.+..-|..|.-++-..|++++|+..|........ -|...+-.+-.++..
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~---~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTI---YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHH
Confidence 334444455555555555555532 2444555555555555555555555555555554442 334444455555555
Q ss_pred cCCHhHHHHHHHHHHhc
Q 010830 302 LNDSTHAVQLWDIMVGI 318 (499)
Q Consensus 302 ~~~~~~a~~~~~~~~~~ 318 (499)
.|+.+.|.+-|+..+..
T Consensus 116 lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNVCYAIKALKAVVRI 132 (157)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 55555555555555543
No 168
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.56 E-value=0.0023 Score=53.15 Aligned_cols=86 Identities=10% Similarity=0.182 Sum_probs=46.1
Q ss_pred CHhHHHHHHHHHHc-----CCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc----------------CCHhHHHHH
Q 010830 325 NLIMYNAVIGLLCN-----NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN----------------KRVHEVEKF 383 (499)
Q Consensus 325 ~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----------------g~~~~a~~~ 383 (499)
+-.+|..+++.|.+ .|..+=....+..|.+.|+.-|..+|+.|++.+=+. .+-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 44445555554442 244555555555666666666666666666554331 123445566
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHhccC
Q 010830 384 FHEMIKNEWQPTPLNCATAITMLLDAD 410 (499)
Q Consensus 384 ~~~~~~~~~~p~~~~~~~li~~~~~~g 410 (499)
+++|...|+-||..++..+++.|.+.+
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 666666666666666666666554433
No 169
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.54 E-value=0.0013 Score=61.44 Aligned_cols=97 Identities=12% Similarity=-0.015 Sum_probs=68.6
Q ss_pred hcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 010830 91 SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSF 170 (499)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 170 (499)
..++++.|++.|+.+.+..+.+...|..+..+|.+.|++++|+..++++.+.++.+...|..+..+|...|++++|...|
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~ 93 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAAL 93 (356)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 45677777777777766666677777777777777777777777777777777666777777777777777777777777
Q ss_pred HHHHhCCCCcCHHHHHHHH
Q 010830 171 DVMSMHGVEQDVVAVNSLL 189 (499)
Q Consensus 171 ~~m~~~g~~p~~~~~~~ll 189 (499)
+...+. .|+.......+
T Consensus 94 ~~al~l--~P~~~~~~~~l 110 (356)
T PLN03088 94 EKGASL--APGDSRFTKLI 110 (356)
T ss_pred HHHHHh--CCCCHHHHHHH
Confidence 777654 45444444443
No 170
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.52 E-value=0.0069 Score=50.24 Aligned_cols=91 Identities=10% Similarity=0.016 Sum_probs=50.6
Q ss_pred hHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCC--HhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHH
Q 010830 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT--LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYN 330 (499)
Q Consensus 253 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 330 (499)
....+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+++..+.. +.+...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN---PKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cccHHHHH
Confidence 344455555666666666666666666554332111 2455556666666677777776666666543 23455555
Q ss_pred HHHHHHHcCCChHHHH
Q 010830 331 AVIGLLCNNDDVDNVF 346 (499)
Q Consensus 331 ~li~~~~~~~~~~~a~ 346 (499)
.+...|...|+...+.
T Consensus 111 ~lg~~~~~~g~~~~a~ 126 (172)
T PRK02603 111 NIAVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHHHcCChHhHh
Confidence 5555666655544433
No 171
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.52 E-value=0.0017 Score=60.73 Aligned_cols=83 Identities=16% Similarity=0.123 Sum_probs=42.8
Q ss_pred CchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHH
Q 010830 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276 (499)
Q Consensus 197 ~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~ 276 (499)
|+++.|+..|++.....+.+...|..+..+|.+.|++++|+..+++..+ +.|++...|..+..+|...|++++|+..
T Consensus 16 ~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~lg~~~eA~~~ 92 (356)
T PLN03088 16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKLEEYQTAKAA 92 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4555555555554443344444555555555555555555555555533 2444445555555555555555555555
Q ss_pred HHHHhh
Q 010830 277 LRVMKG 282 (499)
Q Consensus 277 ~~~m~~ 282 (499)
|++..+
T Consensus 93 ~~~al~ 98 (356)
T PLN03088 93 LEKGAS 98 (356)
T ss_pred HHHHHH
Confidence 555544
No 172
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.50 E-value=0.018 Score=45.74 Aligned_cols=88 Identities=15% Similarity=0.092 Sum_probs=38.1
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHH
Q 010830 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEE 235 (499)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 235 (499)
.+...|++++|.++|+.+... .|....|-.=+.++.+..|++++|+..|...-.-.+.|...+-.+..++...|+.+.
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~ 121 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCY 121 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHH
Confidence 344445555555555544433 233332222222222222444444444444433333444444444444555555555
Q ss_pred HHHHHHHHhH
Q 010830 236 ANKTFGEMVE 245 (499)
Q Consensus 236 a~~~~~~~~~ 245 (499)
|.+-|+....
T Consensus 122 A~~aF~~Ai~ 131 (157)
T PRK15363 122 AIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHH
Confidence 5555444433
No 173
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.49 E-value=0.022 Score=48.70 Aligned_cols=59 Identities=19% Similarity=0.200 Sum_probs=32.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhh
Q 010830 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282 (499)
Q Consensus 224 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 282 (499)
...+...|++++|.+.|+.+...+...|--....-.++.++.+.|+++.|...+++..+
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33445566666666666666655433333344455566666666666666666666554
No 174
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.46 E-value=0.0093 Score=58.48 Aligned_cols=146 Identities=10% Similarity=0.065 Sum_probs=77.9
Q ss_pred cCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCC
Q 010830 212 IVDPDGDSFAILLEGWEKE-----GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286 (499)
Q Consensus 212 ~~~~~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 286 (499)
..+.|...|...+++.... ++.+.|..+|++..+. .|++...|..+..++.....+ .
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~---------------~ 393 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQ---------------Q 393 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhc---------------C
Confidence 4456777777777765432 2366788888888554 776666666554443221110 0
Q ss_pred CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHH
Q 010830 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM 366 (499)
Q Consensus 287 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 366 (499)
+.. ..++..+.+.......... .+.+...|..+...+...|++++|...+++..+. .|+...|..
T Consensus 394 ~~~------------~~~l~~a~~~~~~a~al~~-~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~ 458 (517)
T PRK10153 394 PLD------------EKQLAALSTELDNIVALPE-LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVL 458 (517)
T ss_pred Ccc------------HHHHHHHHHHHHHhhhccc-CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHH
Confidence 100 0111222222222222100 1223455555555555556677777777666663 356666666
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHC
Q 010830 367 IFECLIKNKRVHEVEKFFHEMIKN 390 (499)
Q Consensus 367 ll~~~~~~g~~~~a~~~~~~~~~~ 390 (499)
+...+...|+.++|.+.+++....
T Consensus 459 lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 459 LGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc
Confidence 666666677777777777666553
No 175
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.46 E-value=0.0077 Score=49.96 Aligned_cols=64 Identities=8% Similarity=-0.006 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCC--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 010830 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV--L-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176 (499)
Q Consensus 113 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 176 (499)
...|..+...+...|++++|...|++..+... + ....+..+...+.+.|++++|...+++..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL 101 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34555555666666666666666666654432 1 1345556666666666666666666665543
No 176
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.44 E-value=0.00036 Score=49.92 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=9.5
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 010830 223 LLEGWEKEGNVEEANKTFGE 242 (499)
Q Consensus 223 ll~~~~~~g~~~~a~~~~~~ 242 (499)
+..+|.+.|++++|..+++.
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 44444444444444444444
No 177
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.40 E-value=0.00077 Score=45.38 Aligned_cols=58 Identities=14% Similarity=0.179 Sum_probs=45.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 010830 119 MVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176 (499)
Q Consensus 119 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 176 (499)
+...+.+.|++++|++.|+.+.+..+.+...+..+..++...|++++|..+|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456778888888888888888888777788888888888888888888888887654
No 178
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.38 E-value=0.00066 Score=46.22 Aligned_cols=50 Identities=24% Similarity=0.327 Sum_probs=21.9
Q ss_pred cCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhh
Q 010830 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282 (499)
Q Consensus 230 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 282 (499)
.|++++|.++|+++.+. .|++...+..+..+|.+.|++++|.++++++..
T Consensus 4 ~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444332 343444444444444444444444444444443
No 179
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=0.064 Score=45.97 Aligned_cols=130 Identities=18% Similarity=0.154 Sum_probs=67.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhc------cCCCCHHHHHHH
Q 010830 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK------IVDPDGDSFAIL 223 (499)
Q Consensus 150 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~l 223 (499)
.+.++..+...|.+.-...++.+..+..-+.+......|.+.-.+. ||.+.|...|+.+++ +...+..+....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~-GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQI-GDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3445555555566666666666666554344555555555555555 666666666665543 122222222233
Q ss_pred HHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC
Q 010830 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283 (499)
Q Consensus 224 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 283 (499)
...|.-++++..|...|.++... .|.++...|.-.-+..-.|+..+|++.++.|.+.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~---D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRM---DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhcccc---CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33444455566666666555443 3334444444444444455556666666555553
No 180
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.33 E-value=0.023 Score=48.57 Aligned_cols=180 Identities=12% Similarity=0.091 Sum_probs=93.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCH--HHHHHHHH
Q 010830 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV---LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDV--VAVNSLLS 190 (499)
Q Consensus 116 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~ 190 (499)
+-.....+...|++++|.+.|+.+....+ ......-.++.++.+.|+++.|...++...+. .|+. ..+...+.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~ 85 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYML 85 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHH
Confidence 33444567788899999999999887754 23446777888888999999999999987654 3332 12222222
Q ss_pred HHHccCCchHHHHHHHHHHhcc---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcC
Q 010830 191 AICRQENQTSRALEFLNRVKKI---VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267 (499)
Q Consensus 191 ~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~ 267 (499)
+.+.. ....... ..... ...-...+..++.-|=...-..+|.+.+..+.+. =...--.+...|.+.
T Consensus 86 g~~~~-~~~~~~~----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~------la~~e~~ia~~Y~~~ 154 (203)
T PF13525_consen 86 GLSYY-KQIPGIL----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR------LAEHELYIARFYYKR 154 (203)
T ss_dssp HHHHH-HHHHHHH-----TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH------HHHHHHHHHHHHHCT
T ss_pred HHHHH-HhCccch----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHc
Confidence 22211 1110000 00000 0000122334444454555555665555555443 112223356677777
Q ss_pred CCHHHHHHHHHHHhhCC--CCCCHhhHHHHHHHHHHcCCHhHH
Q 010830 268 KQVDEALKFLRVMKGEN--CFPTLKFFSNALDILVKLNDSTHA 308 (499)
Q Consensus 268 ~~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~~~~~~a 308 (499)
|.+..|..-++.+.+.= ..........++.+|.+.|..+.+
T Consensus 155 ~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 155 GKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp T-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred ccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 77777777777776642 111123445566667776666643
No 181
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.33 E-value=0.015 Score=50.80 Aligned_cols=99 Identities=13% Similarity=0.170 Sum_probs=74.3
Q ss_pred HccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHH
Q 010830 193 CRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272 (499)
Q Consensus 193 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~ 272 (499)
.+. +++.+|+..|.+...-.+.|.+.|..-..+|.+.|.++.|++-.+... .+.|....+|..|-.+|...|++++
T Consensus 92 m~~-~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 92 MKN-KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHh-hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccCcHHH
Confidence 344 788888888888777777788888888888888888888887777763 4567667788888888888888888
Q ss_pred HHHHHHHHhhCCCCCCHhhHHHHHH
Q 010830 273 ALKFLRVMKGENCFPTLKFFSNALD 297 (499)
Q Consensus 273 a~~~~~~m~~~~~~p~~~~~~~li~ 297 (499)
|++.|++..+ +.|+-.+|-.=++
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHHHH
Confidence 8888877665 3476666654443
No 182
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.32 E-value=0.19 Score=49.24 Aligned_cols=121 Identities=13% Similarity=0.097 Sum_probs=63.1
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCC-C---------CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 010830 109 QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-V---------LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGV 178 (499)
Q Consensus 109 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 178 (499)
..|.+..|..+.......-.++-|...|-+...-. + .+...-.+=|.+ --|++++|+++|-+|.++.+
T Consensus 688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrDL 765 (1189)
T KOG2041|consen 688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRDL 765 (1189)
T ss_pred cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhhh
Confidence 67888888888887777777777777775554322 1 111111222222 24788888888887765432
Q ss_pred CcCHHHHHHHHHHHHccCCchHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010830 179 EQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI--VDPDGDSFAILLEGWEKEGNVEEANKTFG 241 (499)
Q Consensus 179 ~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 241 (499)
.+..+.+. |++-.+.++++.=-.+ ...-...|+.+...++....+++|.+.|.
T Consensus 766 ---------Aielr~kl-gDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 766 ---------AIELRKKL-GDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred ---------hHHHHHhh-hhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333344 5555555444331111 01112344444444444444444444443
No 183
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.32 E-value=0.0043 Score=51.26 Aligned_cols=44 Identities=16% Similarity=0.062 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHh
Q 010830 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265 (499)
Q Consensus 219 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~ 265 (499)
++..+...|...|++++|.+.+++..+. .|....++..+...+.
T Consensus 74 ~~~~lg~~~~~~g~~~eA~~~~~~Al~~---~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 74 ILYNIGLIHTSNGEHTKALEYYFQALER---NPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCcHHHHHHHHHHHH
Confidence 4555555555556666665555555332 3333344444444444
No 184
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.31 E-value=0.00069 Score=48.43 Aligned_cols=80 Identities=21% Similarity=0.287 Sum_probs=34.1
Q ss_pred CChhHHHHHHHHHHhCCC-CcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 010830 161 GKYDEAVMSFDVMSMHGV-EQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKT 239 (499)
Q Consensus 161 g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 239 (499)
|+++.|+.+++++.+... .++...+-.+..++.+. |++++|..+++....+ ..+....-.+..+|.+.|++++|.++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~-~~y~~A~~~~~~~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQ-GKYEEAIELLQKLKLD-PSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHT-THHHHHHHHHHCHTHH-HCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHC-CCHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 445555555555544321 01222233344444444 5555555555441111 12223333345555555555555555
Q ss_pred HHH
Q 010830 240 FGE 242 (499)
Q Consensus 240 ~~~ 242 (499)
|++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 543
No 185
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.30 E-value=0.0012 Score=44.44 Aligned_cols=56 Identities=20% Similarity=0.290 Sum_probs=37.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhh
Q 010830 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282 (499)
Q Consensus 224 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 282 (499)
...+.+.|++++|.+.|+++.+. .|++...+..+..++...|++++|...|+++.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQ---DPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCC---STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44566677777777777777543 466666777777777777777777777776654
No 186
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.076 Score=48.61 Aligned_cols=176 Identities=14% Similarity=0.018 Sum_probs=112.4
Q ss_pred HHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHH--HHcCCChHHHHHHHHHHHHCCCCCCHHhHHH--------
Q 010830 297 DILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGL--LCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM-------- 366 (499)
Q Consensus 297 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-------- 366 (499)
.++.-.|+.+.|.++--.+++.. ....+...+++ +.-.++.+.+...|++.++. .|+...-..
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld-----~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~l 249 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD-----ATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKL 249 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc-----cchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHH
Confidence 45566788888888887777764 22233333333 34456788888888887763 344332211
Q ss_pred -----HHHHHHhcCCHhHHHHHHHHHHHC---CCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHH
Q 010830 367 -----IFECLIKNKRVHEVEKFFHEMIKN---EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 438 (499)
Q Consensus 367 -----ll~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 438 (499)
=.+-..+.|.+..|.+.|.+.+.. ..+++...|.....+..+.|+..+|+.-.++..+.+ +..+.-.+.
T Consensus 250 e~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD---~syikall~ 326 (486)
T KOG0550|consen 250 EVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID---SSYIKALLR 326 (486)
T ss_pred HHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC---HHHHHHHHH
Confidence 122245778999999999998875 455666677777778888999999998888776632 122223333
Q ss_pred --HHHHhCCChHHHHHHHHHHHHcCCc-cCHHHHHHHHHHHHhcccc
Q 010830 439 --VGLRNLGRLSDVRRFAEEMLNRRIL-IYEVTMHKLKKAFYNESRS 482 (499)
Q Consensus 439 --~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~g~~ 482 (499)
.++.-.++|++|.+-++...+..-. -...++.....++-++.+.
T Consensus 327 ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRk 373 (486)
T KOG0550|consen 327 RANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRK 373 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhh
Confidence 3344558899999988887754322 2445666666666655443
No 187
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.15 Score=46.86 Aligned_cols=222 Identities=11% Similarity=0.004 Sum_probs=107.1
Q ss_pred CCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHH-
Q 010830 93 DSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD- 171 (499)
Q Consensus 93 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~- 171 (499)
.++..|+..+..+....+.++.-|..-...+..-|++++|.--.+.-.+...-....+.-.-+++...++..+|.+.++
T Consensus 63 k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~ 142 (486)
T KOG0550|consen 63 KTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKS 142 (486)
T ss_pred hhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhhh
Confidence 3456677777777666666777777777777777888877766554444332111122223333333333333333332
Q ss_pred --------------HHHhC-CCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHH
Q 010830 172 --------------VMSMH-GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA 236 (499)
Q Consensus 172 --------------~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 236 (499)
..... --+|...+|-.+=.-|.-..++.++|.++--.+.+-...+......--.++.-.++.+.+
T Consensus 143 ~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka 222 (486)
T KOG0550|consen 143 KQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKA 222 (486)
T ss_pred hhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHH
Confidence 11111 112444555544444443337777777765555543333333332223334446677777
Q ss_pred HHHHHHHhHccCCCCchHHh------------HHHHHHHHhcCCCHHHHHHHHHHHhh---CCCCCCHhhHHHHHHHHHH
Q 010830 237 NKTFGEMVERFEWNPEHVLA------------YETFLITLIRGKQVDEALKFLRVMKG---ENCFPTLKFFSNALDILVK 301 (499)
Q Consensus 237 ~~~~~~~~~~~~~~p~~~~~------------~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~p~~~~~~~li~~~~~ 301 (499)
...|++-. ...|+.... |..-.+-..+.|.+..|.+.|.+.+. .++.++...|........+
T Consensus 223 ~~hf~qal---~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~r 299 (486)
T KOG0550|consen 223 INHFQQAL---RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIR 299 (486)
T ss_pred HHHHhhhh---ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcc
Confidence 77777763 334422111 11112223444555555555554433 1233333344444444444
Q ss_pred cCCHhHHHHHHHHHHh
Q 010830 302 LNDSTHAVQLWDIMVG 317 (499)
Q Consensus 302 ~~~~~~a~~~~~~~~~ 317 (499)
.|+.++|+.--+...+
T Consensus 300 Lgrl~eaisdc~~Al~ 315 (486)
T KOG0550|consen 300 LGRLREAISDCNEALK 315 (486)
T ss_pred cCCchhhhhhhhhhhh
Confidence 5555555544444443
No 188
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.26 E-value=0.16 Score=47.15 Aligned_cols=220 Identities=12% Similarity=0.107 Sum_probs=113.8
Q ss_pred CCchhHHHHHHHhcCCCCCCHHHHHHHHHH--HHhCCChHHHHHHHHHHHhC--C--C--C---------CHHHHHHHHH
Q 010830 93 DSPSSAVDFFRWAGRGQRLSPYAWNLMVDV--LGKNGRFEQMWNAVRVMKED--G--V--L---------SLPTFASIFD 155 (499)
Q Consensus 93 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~--~--~--~---------~~~~~~~li~ 155 (499)
++.+..........+..+ ...|-.+..+ +-+.+.++.|.+.+..-... + . . +...=+..+.
T Consensus 59 ~nld~Me~~l~~l~~~~~--~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~ 136 (549)
T PF07079_consen 59 NNLDLMEKQLMELRQQFG--KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAH 136 (549)
T ss_pred hhHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHH
Confidence 444444444444433222 2233344333 34568889999888777665 2 1 1 1112245677
Q ss_pred HHHhcCChhHHHHHHHHHHhCC----CCcCHHHHHHHHHHHHcc-------CCchHHHHHHHHHH-------hc------
Q 010830 156 SYCGAGKYDEAVMSFDVMSMHG----VEQDVVAVNSLLSAICRQ-------ENQTSRALEFLNRV-------KK------ 211 (499)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~~g----~~p~~~~~~~ll~~~~~~-------~~~~~~a~~~~~~~-------~~------ 211 (499)
.+...|++.+++.++++|...= ..-+..+|+.++-.+.+. +...+-.-.+++++ ..
T Consensus 137 sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y 216 (549)
T PF07079_consen 137 SLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPY 216 (549)
T ss_pred HHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchH
Confidence 8889999999999998886543 336888888866666543 01111122222222 11
Q ss_pred -cCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCC-
Q 010830 212 -IVDPDGDSFAILLEGWEKE--GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP- 287 (499)
Q Consensus 212 -~~~~~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p- 287 (499)
.+.|-...+..++....-. ....--.++++.-.. .-+.|+.......++..+.+ +.+++..+-+.+....+.+
T Consensus 217 ~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~-~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~L 293 (549)
T PF07079_consen 217 EKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWEN-FYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKL 293 (549)
T ss_pred HhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHh-hccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHH
Confidence 1223333333333322211 111222233333322 34555444444445555544 4555555544443322111
Q ss_pred ---CHhhHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 010830 288 ---TLKFFSNALDILVKLNDSTHAVQLWDIMVG 317 (499)
Q Consensus 288 ---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 317 (499)
-..+|..++....+.++...|.+.+.-+.-
T Consensus 294 ke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 294 KEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 245777888888888888888888777665
No 189
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.25 E-value=0.011 Score=48.82 Aligned_cols=64 Identities=6% Similarity=-0.087 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 010830 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL---SLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176 (499)
Q Consensus 113 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 176 (499)
...|..+...+...|++++|+..|+........ ...+|..+...+...|++++|++.++...+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445555666666666666666666666544321 2235666666666666666666666665543
No 190
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.21 E-value=0.028 Score=42.91 Aligned_cols=55 Identities=18% Similarity=0.164 Sum_probs=27.5
Q ss_pred HHHHhCCChHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010830 121 DVLGKNGRFEQMWNAVRVMKEDGVLS---LPTFASIFDSYCGAGKYDEAVMSFDVMSM 175 (499)
Q Consensus 121 ~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 175 (499)
.++-..|+.++|+.+|++....|..+ ...+-.+...+...|++++|..+|++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444555555555555555555322 22344444455555555555555555443
No 191
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.21 E-value=0.17 Score=46.17 Aligned_cols=309 Identities=15% Similarity=0.035 Sum_probs=197.9
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHh--cCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHH--HccCCchHHHHHH
Q 010830 130 EQMWNAVRVMKEDGVLSLPTFASIFDSYCG--AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI--CRQENQTSRALEF 205 (499)
Q Consensus 130 ~~a~~~~~~m~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~~~~a~~~ 205 (499)
..+.+.|..-++.. -|..|-.+++. .|+-..|.++-.+-.+. +.-|......++.+- .-. |+++.|.+-
T Consensus 70 ~t~~Ryfr~rKRdr-----gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~e-G~~~~Ar~k 142 (531)
T COG3898 70 YTARRYFRERKRDR-----GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLE-GDYEDARKK 142 (531)
T ss_pred HHHHHHHHHHHhhh-----HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhc-CchHHHHHH
Confidence 34444554444331 26666666554 46778887776654321 233444444444332 224 999999999
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC-
Q 010830 206 LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN- 284 (499)
Q Consensus 206 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~- 284 (499)
|+.|......-..-...|.-...+.|+.+.|...-+...+ ..|.-...+...+...+..|+|+.|+++++.-+...
T Consensus 143 feAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~---~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~v 219 (531)
T COG3898 143 FEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAE---KAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKV 219 (531)
T ss_pred HHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHh---hccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHh
Confidence 9999763222223333444445678999999998888844 466566788999999999999999999998876533
Q ss_pred CCCCHhh--HHHHHHHHH---HcCCHhHHHHHHHHHHhcCCCCCCCHhHHH-HHHHHHHcCCChHHHHHHHHHHHHCCCC
Q 010830 285 CFPTLKF--FSNALDILV---KLNDSTHAVQLWDIMVGIGFNLMPNLIMYN-AVIGLLCNNDDVDNVFRFFDQMVFHGAF 358 (499)
Q Consensus 285 ~~p~~~~--~~~li~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~g~~ 358 (499)
+.++..- -..|+.+-. -..+...|...-.+..+ +.||..--. .-..++.+.|+..++-.+++.+-+....
T Consensus 220 ie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K----L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 220 IEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK----LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH 295 (531)
T ss_pred hchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh----cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC
Confidence 4444322 122332221 12456777777777666 445544322 2346789999999999999999986555
Q ss_pred CCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHC-CCCCC-hhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHH
Q 010830 359 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN-EWQPT-PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 436 (499)
Q Consensus 359 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 436 (499)
|++ + ..|.+..--+.+..-+++..+. .++|| ......+..+-...|++..|..--+...+ ..|....|-.
T Consensus 296 P~i--a----~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lL 367 (531)
T COG3898 296 PDI--A----LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLL 367 (531)
T ss_pred hHH--H----HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHH
Confidence 543 2 2344433334455555544432 34444 45566677777888999888877766655 5788888887
Q ss_pred HHHHH-HhCCChHHHHHHHHHHHHc
Q 010830 437 LLVGL-RNLGRLSDVRRFAEEMLNR 460 (499)
Q Consensus 437 ll~~~-~~~g~~~~a~~~~~~m~~~ 460 (499)
|.+.- ...||-.++..++-+.+..
T Consensus 368 lAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 368 LADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHhhccCchHHHHHHHHHHhcC
Confidence 77664 4569999999999888765
No 192
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.20 E-value=0.085 Score=42.75 Aligned_cols=132 Identities=9% Similarity=0.015 Sum_probs=85.2
Q ss_pred CCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCC---CCCChhh
Q 010830 322 LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE---WQPTPLN 398 (499)
Q Consensus 322 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~p~~~~ 398 (499)
..|++..--.|..+..+.|+..+|...|++...--+.-|....-.+.++....+++..|...++++.+.. -.| .+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p--d~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP--DG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC--Cc
Confidence 4566666667777777888888888888777664445566667777777777788888887777776642 223 34
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 010830 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 457 (499)
Q Consensus 399 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 457 (499)
...+.+.+...|.++.|+.-|+.....--.|....| .-..+.+.|+.+++..-+.+.
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~--Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPGPQARIY--YAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHH--HHHHHHHhcchhHHHHHHHHH
Confidence 455667777777887788777777764323333333 333455667666665444443
No 193
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.17 E-value=0.002 Score=43.94 Aligned_cols=64 Identities=17% Similarity=0.246 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHh
Q 010830 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAG-KYDEAVMSFDVMSM 175 (499)
Q Consensus 112 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~ 175 (499)
++..|..+...+...|++++|+..|++..+.++.+...|..+..+|...| ++++|++.++...+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 45678888888888888888888888888888778888888888888888 68888888887764
No 194
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.018 Score=50.56 Aligned_cols=126 Identities=10% Similarity=0.049 Sum_probs=82.8
Q ss_pred HHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHc---CCHhHHHHHHHH
Q 010830 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL---NDSTHAVQLWDI 314 (499)
Q Consensus 238 ~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---~~~~~a~~~~~~ 314 (499)
++...++.+..-+|+|...|-.|...|...|+.+.|..-|.+..+.. .++...+..+..++... ....++.+++++
T Consensus 140 ~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~ 218 (287)
T COG4235 140 ALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQ 218 (287)
T ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 33334444445578888888888888888888888888888776632 23444555555444433 235677788888
Q ss_pred HHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 010830 315 MVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFE 369 (499)
Q Consensus 315 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 369 (499)
+++.+ +-|+.+..-|...+...|++.+|...|+.|.+. -|....+..+|.
T Consensus 219 al~~D---~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie 268 (287)
T COG4235 219 ALALD---PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIE 268 (287)
T ss_pred HHhcC---CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHH
Confidence 88765 446666677777788888888888888888874 233334444443
No 195
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.15 E-value=0.031 Score=54.90 Aligned_cols=137 Identities=10% Similarity=-0.010 Sum_probs=69.4
Q ss_pred CCcCHHHHHHHHHHHHcc----CCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHhH
Q 010830 178 VEQDVVAVNSLLSAICRQ----ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG--------NVEEANKTFGEMVE 245 (499)
Q Consensus 178 ~~p~~~~~~~ll~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g--------~~~~a~~~~~~~~~ 245 (499)
...+...|...+++.... .++.+.|..+|++..+..+.....|..+..+|.... ++..+.+...+...
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 356778888888775432 134668888888887755555666665544442221 11222222222211
Q ss_pred ccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 010830 246 RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317 (499)
Q Consensus 246 ~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 317 (499)
. ...|.+...|..+.-.....|++++|...+++..+.+ |+...|..+...+...|+.++|.+.+++...
T Consensus 413 l-~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 413 L-PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred c-ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1 1122233444444444444455555555555555443 3444555555555555555555555555544
No 196
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.09 E-value=0.22 Score=45.55 Aligned_cols=111 Identities=14% Similarity=0.069 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 010830 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDI 298 (499)
Q Consensus 219 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 298 (499)
+.+.-+.-+...|+...|.++-.+. .+ | +..-|-..+.+++..++|++-.++-.. . -++.-|..++.+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~-dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~ 246 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----KV-P-DKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEA 246 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----CC-c-HHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHH
Confidence 4555566777788888887776555 22 3 777888899999999999887765432 1 234778888999
Q ss_pred HHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 010830 299 LVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353 (499)
Q Consensus 299 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 353 (499)
|.+.|...+|..++..+. +..-+..|.++|++.+|.+.-.+..
T Consensus 247 ~~~~~~~~eA~~yI~k~~------------~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPKIP------------DEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HHHCCCHHHHHHHHHhCC------------hHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 999999888887766521 2456778888898888877654443
No 197
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.08 E-value=0.0039 Score=42.47 Aligned_cols=64 Identities=19% Similarity=0.278 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCC-CHHHHHHHHHHHhh
Q 010830 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK-QVDEALKFLRVMKG 282 (499)
Q Consensus 216 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~ 282 (499)
+..+|..+...+.+.|++++|+..|++..+. .|++...|..+..++.+.| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~---~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL---DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH---STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3456666677777777777777777777553 5666667777777777777 57777777766543
No 198
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.06 E-value=0.015 Score=51.60 Aligned_cols=88 Identities=11% Similarity=0.093 Sum_probs=41.5
Q ss_pred HhcCCHHHHHHHHHHHhHccCCCCch---HHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC--CCCCHhhHHHHHHHHHHc
Q 010830 228 EKEGNVEEANKTFGEMVERFEWNPEH---VLAYETFLITLIRGKQVDEALKFLRVMKGEN--CFPTLKFFSNALDILVKL 302 (499)
Q Consensus 228 ~~~g~~~~a~~~~~~~~~~~~~~p~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~ 302 (499)
.+.|++++|...|+.+.+. .|++ ...+..+...|...|++++|...|+.+.+.- -......+..+..++...
T Consensus 154 ~~~~~y~~Ai~af~~fl~~---yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~ 230 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK---YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDK 230 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH---CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHc
Confidence 3445555555555555443 2322 2344455555555555555555555554321 011122233334444555
Q ss_pred CCHhHHHHHHHHHHhc
Q 010830 303 NDSTHAVQLWDIMVGI 318 (499)
Q Consensus 303 ~~~~~a~~~~~~~~~~ 318 (499)
|+.+.|..+|+.+++.
T Consensus 231 g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 231 GDTAKAKAVYQQVIKK 246 (263)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 5556666655555553
No 199
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.04 E-value=0.32 Score=47.36 Aligned_cols=56 Identities=11% Similarity=-0.030 Sum_probs=34.1
Q ss_pred CHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010830 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389 (499)
Q Consensus 325 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 389 (499)
+..+...+...+.+...+.-|-++|..|-+ ...+++.....+++.+|..+-+..-+
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc
Confidence 344455555555566667777777777654 23455566677777777777665533
No 200
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.03 E-value=0.061 Score=41.04 Aligned_cols=56 Identities=13% Similarity=0.032 Sum_probs=26.4
Q ss_pred HHHhcCCCHHHHHHHHHHHhhCCCCCC--HhhHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 010830 262 ITLIRGKQVDEALKFLRVMKGENCFPT--LKFFSNALDILVKLNDSTHAVQLWDIMVG 317 (499)
Q Consensus 262 ~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 317 (499)
.++-..|+.++|+.+|++....|.... ...+..+-.++...|++++|..+++....
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444555555555555555443322 12233344444555555555555555444
No 201
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.03 E-value=0.39 Score=47.21 Aligned_cols=106 Identities=12% Similarity=0.198 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 010830 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228 (499)
Q Consensus 149 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~ 228 (499)
+|+.+...++....+++|.+.|..-... ...+.++.+. .++++.+.+-+ .++.+....-.+.+++.
T Consensus 798 A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ecly~l-e~f~~LE~la~----~Lpe~s~llp~~a~mf~ 863 (1189)
T KOG2041|consen 798 AFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIECLYRL-ELFGELEVLAR----TLPEDSELLPVMADMFT 863 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHHHHHHHH-HhhhhHHHHHH----hcCcccchHHHHHHHHH
Confidence 5555555555555555555555432110 1123333333 33333333322 23445555666777777
Q ss_pred hcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHH
Q 010830 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279 (499)
Q Consensus 229 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~ 279 (499)
..|..++|.+.|-+... | ...+..|...++|.+|.++-++
T Consensus 864 svGMC~qAV~a~Lr~s~-----p------kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 864 SVGMCDQAVEAYLRRSL-----P------KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred hhchHHHHHHHHHhccC-----c------HHHHHHHHHHHHHHHHHHHHHh
Confidence 77777777776654321 1 1245566666777777666544
No 202
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.02 E-value=0.018 Score=52.39 Aligned_cols=267 Identities=12% Similarity=0.066 Sum_probs=153.3
Q ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHH--h--CCCCc-CHHHHHHHHHH
Q 010830 121 DVLGKNGRFEQMWNAVRVMKEDGVLSLP----TFASIFDSYCGAGKYDEAVMSFDVMS--M--HGVEQ-DVVAVNSLLSA 191 (499)
Q Consensus 121 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~--~--~g~~p-~~~~~~~ll~~ 191 (499)
.-+++.|+...-+.+|+...+.|..|.. +|..|..+|.-.+++++|++....=. . .|-+. ...+...|-..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 4478888888888999888888865533 56667777888888888887764311 0 01000 00111111122
Q ss_pred HHccCCchHHHHHHHHHH----hc-cC-CCCHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHhH
Q 010830 192 ICRQENQTSRALEFLNRV----KK-IV-DPDGDSFAILLEGWEKEGN--------------------VEEANKTFGEMVE 245 (499)
Q Consensus 192 ~~~~~~~~~~a~~~~~~~----~~-~~-~~~~~~~~~ll~~~~~~g~--------------------~~~a~~~~~~~~~ 245 (499)
+--. |.+++|.....+- ++ |. ......+..+...|...|+ ++.|.++|.+-.+
T Consensus 105 lKv~-G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 105 LKVK-GAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhh-cccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 2222 5555555443221 11 11 1122344445555554432 2334444433211
Q ss_pred ---ccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHH----hhCCCC-CCHhhHHHHHHHHHHcCCHhHHHHHHHHHH-
Q 010830 246 ---RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM----KGENCF-PTLKFFSNALDILVKLNDSTHAVQLWDIMV- 316 (499)
Q Consensus 246 ---~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m----~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~~~- 316 (499)
..|-...-...|..|.+.|.-.|+++.|+...+.- ++-|-. .....+..+-+++.-.|+++.|.+.|+...
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 11111112235666667777778999998776542 222311 223466778888888899999999887654
Q ss_pred ---hcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHH----CC-CCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010830 317 ---GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF----HG-AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388 (499)
Q Consensus 317 ---~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 388 (499)
+.|. -........+|...|.-..++++|+.++.+-.. .+ ..-....+.+|..+|...|..++|+.+.+..+
T Consensus 264 LAielg~-r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 264 LAIELGN-RTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhcc-hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3331 123456677788888888889999888765332 11 11234678888889999999999888776655
Q ss_pred H
Q 010830 389 K 389 (499)
Q Consensus 389 ~ 389 (499)
+
T Consensus 343 ~ 343 (639)
T KOG1130|consen 343 R 343 (639)
T ss_pred H
Confidence 4
No 203
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.042 Score=48.32 Aligned_cols=109 Identities=11% Similarity=0.154 Sum_probs=60.3
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc--cCCchHHHHHHHHHHhccC
Q 010830 136 VRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR--QENQTSRALEFLNRVKKIV 213 (499)
Q Consensus 136 ~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~~~~~~~a~~~~~~~~~~~ 213 (499)
++.-...++-|...|-.|...|...|+++.|..-|....+.. .++...+..+-.++.. .+.+..++..+|+++....
T Consensus 145 Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D 223 (287)
T COG4235 145 LETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD 223 (287)
T ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC
Confidence 333344455566667777777777777777777776665542 2333333333333222 1133445556666665555
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 010830 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245 (499)
Q Consensus 214 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 245 (499)
+.|+.+...|...+...|++.+|...|+.|.+
T Consensus 224 ~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 224 PANIRALSLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred CccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 55555555566666666666666666666643
No 204
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.94 E-value=0.021 Score=44.00 Aligned_cols=103 Identities=11% Similarity=0.093 Sum_probs=68.7
Q ss_pred CHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHH
Q 010830 360 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 439 (499)
Q Consensus 360 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 439 (499)
|..++..+|.++++.|+.+....+++..- |+.++... ..+. .-....+.|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 45677778888888888777777765543 22222110 0000 1123456788888888888
Q ss_pred HHHhCCChHHHHHHHHHHHH-cCCccCHHHHHHHHHHHHhcccc
Q 010830 440 GLRNLGRLSDVRRFAEEMLN-RRILIYEVTMHKLKKAFYNESRS 482 (499)
Q Consensus 440 ~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~g~~ 482 (499)
+|+..|++..|.++++...+ -++..+..+|..|++-+...-+.
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~~ 104 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSSK 104 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Confidence 88888888888888888765 46777788888888876665543
No 205
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.94 E-value=0.0066 Score=41.88 Aligned_cols=63 Identities=11% Similarity=0.072 Sum_probs=53.0
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHH
Q 010830 120 VDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVA 184 (499)
Q Consensus 120 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 184 (499)
-..|.+.++++.|+++++.+...++.+...|......+.+.|++++|.+.|+...+. .|+...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~~ 64 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDPD 64 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcHH
Confidence 356788899999999999999998888888999999999999999999999998866 444433
No 206
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.93 E-value=0.0061 Score=49.00 Aligned_cols=70 Identities=13% Similarity=0.213 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-----hCCCCcCHHH
Q 010830 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS-----MHGVEQDVVA 184 (499)
Q Consensus 115 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~ 184 (499)
+...++..+...|++++|.++.+.+...++.+...|..+|.+|...|+...|.++|+.+. +.|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 445556666677788888888887777777777778888888888888888877777763 3466666654
No 207
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.83 E-value=0.53 Score=45.63 Aligned_cols=85 Identities=16% Similarity=0.189 Sum_probs=70.5
Q ss_pred cCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhC-CChHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHhcCChhHHH
Q 010830 92 YDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKN-GRFEQMWNAVRVMKEDG---VLSLPTFASIFDSYCGAGKYDEAV 167 (499)
Q Consensus 92 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 167 (499)
.|..+.+.++|+....+.+.+...|...+..+... |+.+...+.|+...... ..+...|...|..-..++++....
T Consensus 92 lg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~ 171 (577)
T KOG1258|consen 92 LGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVA 171 (577)
T ss_pred hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHH
Confidence 36678889999988888999999998888766654 78888888998887654 467778999999989999999999
Q ss_pred HHHHHHHhC
Q 010830 168 MSFDVMSMH 176 (499)
Q Consensus 168 ~~~~~m~~~ 176 (499)
.+++++++.
T Consensus 172 ~iyeRilei 180 (577)
T KOG1258|consen 172 NIYERILEI 180 (577)
T ss_pred HHHHHHHhh
Confidence 999999853
No 208
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.82 E-value=0.014 Score=50.98 Aligned_cols=92 Identities=15% Similarity=0.108 Sum_probs=51.8
Q ss_pred CCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010830 93 DSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172 (499)
Q Consensus 93 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 172 (499)
+++++|+..|..+....+.|.+.|..-..+|.+.|.++.|++=-+.....++-...+|..|-.+|...|++++|.+.|++
T Consensus 95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykK 174 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKK 174 (304)
T ss_pred hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHh
Confidence 45555555555555555555555555555666666666555555555555544455555566666666666666655555
Q ss_pred HHhCCCCcCHHHHH
Q 010830 173 MSMHGVEQDVVAVN 186 (499)
Q Consensus 173 m~~~g~~p~~~~~~ 186 (499)
.++. .|+..+|-
T Consensus 175 aLel--dP~Ne~~K 186 (304)
T KOG0553|consen 175 ALEL--DPDNESYK 186 (304)
T ss_pred hhcc--CCCcHHHH
Confidence 5443 45555443
No 209
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.80 E-value=0.055 Score=43.40 Aligned_cols=56 Identities=13% Similarity=0.226 Sum_probs=28.1
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 010830 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353 (499)
Q Consensus 295 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 353 (499)
++..+...|+++.|..+.+.+.... +-|...|..+|.+|...|+...|.++|+++.
T Consensus 68 l~~~~~~~~~~~~a~~~~~~~l~~d---P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 68 LAEALLEAGDYEEALRLLQRALALD---PYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHS---TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4444445555555555555555543 3345555555555555555555555555443
No 210
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.79 E-value=0.45 Score=44.39 Aligned_cols=136 Identities=12% Similarity=0.101 Sum_probs=85.0
Q ss_pred hcCCchhHHHHHHHhcCCCCCC------HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHH--HHhcCC
Q 010830 91 SYDSPSSAVDFFRWAGRGQRLS------PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDS--YCGAGK 162 (499)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~--~~~~g~ 162 (499)
..++..+|.++|-.+......+ ...-+.++++|... +.+.....+....+....+ .|-.+..+ +-+.+.
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~s--~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGKS--AYLPLFKALVAYKQKE 94 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHhhh
Confidence 4577888888887775433333 23345666666654 5666666666666554422 34444433 456788
Q ss_pred hhHHHHHHHHHHhC--CCCcCH-----------HH-HHHHHHHHHccCCchHHHHHHHHHHhc-----cCCCCHHHHHHH
Q 010830 163 YDEAVMSFDVMSMH--GVEQDV-----------VA-VNSLLSAICRQENQTSRALEFLNRVKK-----IVDPDGDSFAIL 223 (499)
Q Consensus 163 ~~~A~~~~~~m~~~--g~~p~~-----------~~-~~~ll~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~l 223 (499)
+++|.+.+....+. +-.+.- .. -+....++... |.+.+++.+++++.. ....+..+|+-+
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~-g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIET-GRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 88888888877655 334421 11 13445566667 899999999888755 334688888887
Q ss_pred HHHHHhc
Q 010830 224 LEGWEKE 230 (499)
Q Consensus 224 l~~~~~~ 230 (499)
+-.+++.
T Consensus 174 vlmlsrS 180 (549)
T PF07079_consen 174 VLMLSRS 180 (549)
T ss_pred HHHHhHH
Confidence 7777664
No 211
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.79 E-value=0.022 Score=51.87 Aligned_cols=265 Identities=12% Similarity=0.047 Sum_probs=159.4
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCcCHH----HHHHHHHHHHccCCchHHHHHHHHH---Hhc--c-CCCCHHHHHHHH
Q 010830 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVV----AVNSLLSAICRQENQTSRALEFLNR---VKK--I-VDPDGDSFAILL 224 (499)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~~a~~~~~~---~~~--~-~~~~~~~~~~ll 224 (499)
.-+++.|+.......|+..++.| .-|.. .|..|-.+|.-. +++++|+++... +.+ | -.-.......|.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL-~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYL-KDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhH-hhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 45789999999999999999887 44443 455566667667 899999988543 111 1 111222333444
Q ss_pred HHHHhcCCHHHHHHHHHH----HhHccCCCCchHHhHHHHHHHHhcCCC--------------------HHHHHHHHHH-
Q 010830 225 EGWEKEGNVEEANKTFGE----MVERFEWNPEHVLAYETFLITLIRGKQ--------------------VDEALKFLRV- 279 (499)
Q Consensus 225 ~~~~~~g~~~~a~~~~~~----~~~~~~~~p~~~~~~~~li~~~~~~~~--------------------~~~a~~~~~~- 279 (499)
+.+--.|.+++|.-...+ ..+ .|-..-....+..+...|...|+ ++.|.++|.+
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~are-LgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN 181 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARE-LGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN 181 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHH-HhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHH
Confidence 445556677766533221 111 12111123345556666655532 3445555543
Q ss_pred ---HhhCCCC-CCHhhHHHHHHHHHHcCCHhHHHHHHHHHH----hcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHH
Q 010830 280 ---MKGENCF-PTLKFFSNALDILVKLNDSTHAVQLWDIMV----GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351 (499)
Q Consensus 280 ---m~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 351 (499)
+.+.|-. .-...|..|-+.|.-.|+++.|+...+.-+ +.|. -......+..+..++.-.|+++.|.+.|+.
T Consensus 182 L~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD-rAaeRRA~sNlgN~hiflg~fe~A~ehYK~ 260 (639)
T KOG1130|consen 182 LELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD-RAAERRAHSNLGNCHIFLGNFELAIEHYKL 260 (639)
T ss_pred HHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh-HHHHHHhhcccchhhhhhcccHhHHHHHHH
Confidence 1122200 112345566666777789999988776533 2230 112345677888888889999999998876
Q ss_pred HHH----CCC-CCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHC-----CCCCChhhHHHHHHHHhccCChhHHHHHHHH
Q 010830 352 MVF----HGA-FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN-----EWQPTPLNCATAITMLLDADEPEIAIEIWNY 421 (499)
Q Consensus 352 m~~----~g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 421 (499)
-.. .|- .....+.-+|...|.-..++++|+.++.+-+.. ..--....|.+|..+|...|..++|..+.+.
T Consensus 261 tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 261 TLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 543 221 123345566777888888899998888764431 1112456788899999999999998887765
Q ss_pred HH
Q 010830 422 IL 423 (499)
Q Consensus 422 m~ 423 (499)
-.
T Consensus 341 hl 342 (639)
T KOG1130|consen 341 HL 342 (639)
T ss_pred HH
Confidence 54
No 212
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.77 E-value=0.3 Score=42.04 Aligned_cols=132 Identities=14% Similarity=0.114 Sum_probs=68.3
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHH----
Q 010830 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI---- 403 (499)
Q Consensus 328 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li---- 403 (499)
+.+.++..+...|++.-....+++..+.....++.....+.+.-.+.|+.+.|...|++..+..-+.|..+++.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3445555555555666666666666655444455555666666666666666666666555432233333333322
Q ss_pred -HHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 010830 404 -TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460 (499)
Q Consensus 404 -~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 460 (499)
..|...+++..|...+.++...+ ..|+...|.=.-++.-.|+..+|.+.++.|++.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22334455666666665555433 122233333222333446666666666666654
No 213
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.77 E-value=0.47 Score=44.22 Aligned_cols=95 Identities=5% Similarity=-0.023 Sum_probs=76.9
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 010830 98 AVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177 (499)
Q Consensus 98 a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 177 (499)
-+++-+.+. ..+.|..+|-.||.-+...|..++..+++++|...-+.-..+|..-+.+-....++...+.+|.+....
T Consensus 28 ~lrLRerIk-dNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k- 105 (660)
T COG5107 28 ELRLRERIK-DNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK- 105 (660)
T ss_pred HHHHHHHhh-cCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh-
Confidence 345555543 477889999999999999999999999999999887666778999999988899999999999998876
Q ss_pred CCcCHHHHHHHHHHHHcc
Q 010830 178 VEQDVVAVNSLLSAICRQ 195 (499)
Q Consensus 178 ~~p~~~~~~~ll~~~~~~ 195 (499)
..+...|...+.-.-+.
T Consensus 106 -~l~ldLW~lYl~YIRr~ 122 (660)
T COG5107 106 -SLNLDLWMLYLEYIRRV 122 (660)
T ss_pred -hccHhHHHHHHHHHHhh
Confidence 44566666666655444
No 214
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.73 E-value=0.24 Score=40.30 Aligned_cols=131 Identities=14% Similarity=0.076 Sum_probs=82.6
Q ss_pred CCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCC---CCCCH
Q 010830 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG---AFPDS 361 (499)
Q Consensus 285 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~p~~ 361 (499)
+.|+...-..+..++.+.|+..+|...|++...-- +.-|....-.+.++....+++..|...++++.+.. -.||
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~--fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd- 161 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGI--FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD- 161 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccc--cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC-
Confidence 44666666667777777777777777777776544 45566777777777777777777777777776642 2233
Q ss_pred HhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHH
Q 010830 362 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 421 (499)
Q Consensus 362 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 421 (499)
+.-.+.+.+...|...+|+.-|+..+..- |+...-......+.+.|+.+++..-+..
T Consensus 162 -~~Ll~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 162 -GHLLFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred -chHHHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 23445566777777777777777777643 4444433344445566666555544433
No 215
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.68 E-value=0.052 Score=48.13 Aligned_cols=57 Identities=11% Similarity=0.142 Sum_probs=26.5
Q ss_pred HHHHHccCCchHHHHHHHHHHhccCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhHc
Q 010830 189 LSAICRQENQTSRALEFLNRVKKIVDP---DGDSFAILLEGWEKEGNVEEANKTFGEMVER 246 (499)
Q Consensus 189 l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 246 (499)
-..|... |++++|...|+.+.+..+. ....+..+...+.+.|+.++|.++|+.+.+.
T Consensus 187 G~~y~~~-g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 187 GQLNYNK-GKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3333444 4455555554444432222 2223333344455566666666666666544
No 216
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.68 E-value=0.16 Score=38.64 Aligned_cols=139 Identities=16% Similarity=0.166 Sum_probs=67.3
Q ss_pred HcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHH
Q 010830 301 KLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEV 380 (499)
Q Consensus 301 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 380 (499)
-.|..++..++..+..... +..-||.+|--....-+-+-..++++..-+ -.|... .|++...
T Consensus 14 ldG~V~qGveii~k~v~Ss-----ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~----------C~NlKrV 75 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS-----NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISK----------CGNLKRV 75 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS------HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-----------S-THHH
T ss_pred HhchHHHHHHHHHHHcCcC-----CccccceeeeecchhhchhHHHHHHHHHhh---hcCchh----------hcchHHH
Confidence 3466777777777666543 444455554443333333333333333322 122221 1222222
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 010830 381 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460 (499)
Q Consensus 381 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 460 (499)
...+-.+ + .+...+...+......|+-+.-.+++.++.+.+ .+++...-.+..+|.+.|+..++.+++++.-++
T Consensus 76 i~C~~~~---n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 76 IECYAKR---N--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHT---T-----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHh---c--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 2222211 1 133344555666667777777777777776533 566666677777777778777777777777777
Q ss_pred CCc
Q 010830 461 RIL 463 (499)
Q Consensus 461 ~~~ 463 (499)
|++
T Consensus 150 G~k 152 (161)
T PF09205_consen 150 GLK 152 (161)
T ss_dssp T-H
T ss_pred chH
Confidence 754
No 217
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.58 E-value=0.044 Score=42.27 Aligned_cols=100 Identities=9% Similarity=0.091 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHH
Q 010830 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225 (499)
Q Consensus 146 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~ 225 (499)
|..++.++|.++++.|+++....+++..- |+..+... .. +. -.-.....|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~-~~--------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KE-GD--------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------cc-Cc--------cCCCCCCCCCHHHHHHHHH
Confidence 34567777777777777777777775543 22222100 00 00 0001245688889999999
Q ss_pred HHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhc
Q 010830 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266 (499)
Q Consensus 226 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~ 266 (499)
+|+..|++..|.++.+.+.+.+++.- +...|..|++-...
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i-~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPI-PKEFWRRLLEWAYV 100 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHH
Confidence 99999999999999999888888666 46678777765433
No 218
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.58 E-value=0.033 Score=48.13 Aligned_cols=105 Identities=9% Similarity=0.025 Sum_probs=58.0
Q ss_pred CCHHhHHHHHHHHHhc-----CCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHH
Q 010830 359 PDSLTYNMIFECLIKN-----KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 433 (499)
Q Consensus 359 p~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 433 (499)
-|..+|-..+..+... +.++-....++.|.+.|+.-|..+|+.|++.+-+.. +.|.. +
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~n-v 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQN-V 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHH-H
Confidence 3556666666665433 344545555666666677777777777766654421 11111 1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc
Q 010830 434 ANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 482 (499)
Q Consensus 434 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 482 (499)
+....-.|-+ +-+=++.++++|...|+.||..+-..|+++|.+.+..
T Consensus 128 fQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 128 FQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 1111111211 1123566777777777777777777777777776655
No 219
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.55 E-value=0.22 Score=37.92 Aligned_cols=61 Identities=15% Similarity=0.127 Sum_probs=26.3
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCC
Q 010830 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG 356 (499)
Q Consensus 293 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 356 (499)
...++.+.+.|+-++-.+++..+.+.+ .+++...-.+..+|.+.|+..++.+++.+..+.|
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn~---~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKNE---EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH--------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhcc---CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 334444445555555555555544322 3444444445555555555555555555554444
No 220
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.54 E-value=0.67 Score=43.04 Aligned_cols=78 Identities=13% Similarity=0.020 Sum_probs=40.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhHccCC-CCchHHhHHHHHHHHhc---CCCHHHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 010830 222 ILLEGWEKEGNVEEANKTFGEMVERFEW-NPEHVLAYETFLITLIR---GKQVDEALKFLRVMKGENCFPTLKFFSNALD 297 (499)
Q Consensus 222 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 297 (499)
.++-.|-...+++...++++.+..-... .++....-....-++.+ .|+.++|++++..+....-.++..+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444566666677777777666442111 11122222233344444 5677777777766544444555666655554
Q ss_pred HH
Q 010830 298 IL 299 (499)
Q Consensus 298 ~~ 299 (499)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 44
No 221
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.53 E-value=0.69 Score=43.16 Aligned_cols=81 Identities=10% Similarity=0.070 Sum_probs=63.9
Q ss_pred CHHHHHHHHH--hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 010830 80 TPDLVHEVLQ--LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSY 157 (499)
Q Consensus 80 ~~~~~~~~l~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~ 157 (499)
+...+-.++. ...+..+...+.++.+.+.++.=..+|...+++-...+++.....+|.+..... .+...|...+..-
T Consensus 41 nI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~-l~ldLW~lYl~YI 119 (660)
T COG5107 41 NILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS-LNLDLWMLYLEYI 119 (660)
T ss_pred hHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh-ccHhHHHHHHHHH
Confidence 4555666666 457788889999999988778788899999999999999999999999988764 4577777777765
Q ss_pred HhcC
Q 010830 158 CGAG 161 (499)
Q Consensus 158 ~~~g 161 (499)
.+..
T Consensus 120 Rr~n 123 (660)
T COG5107 120 RRVN 123 (660)
T ss_pred HhhC
Confidence 5544
No 222
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.52 E-value=0.017 Score=39.76 Aligned_cols=57 Identities=18% Similarity=0.144 Sum_probs=35.9
Q ss_pred HHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 010830 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284 (499)
Q Consensus 225 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 284 (499)
..|.+.+++++|.++++.+.. +.|++...|.....++.+.|++++|.+.|+...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~---~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALE---LDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHH---hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 345566666666666666643 356566666666666666666666666666665543
No 223
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.37 Score=42.47 Aligned_cols=148 Identities=11% Similarity=0.069 Sum_probs=80.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCC
Q 010830 118 LMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197 (499)
Q Consensus 118 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 197 (499)
.-.......|++.+|..+|........-+...-..++.+|...|+.+.|..++..+...--.........-|..+.+. .
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qa-a 217 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQA-A 217 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH-h
Confidence 334456777888888888888888776667777788888888888888888888775431111111111122222222 2
Q ss_pred chHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCC
Q 010830 198 QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268 (499)
Q Consensus 198 ~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~ 268 (499)
...+...+-..... .+.|...-..+...+...|+.+.|.+.+-.+.++ ...-.|...-..++..+.-.|
T Consensus 218 ~~~~~~~l~~~~aa-dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~-d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 218 ATPEIQDLQRRLAA-DPDDVEAALALADQLHLVGRNEAALEHLLALLRR-DRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred cCCCHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cccccCcHHHHHHHHHHHhcC
Confidence 22222222222221 1224555555666666666666666555555443 222223334444554444444
No 224
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.46 E-value=0.43 Score=39.91 Aligned_cols=182 Identities=13% Similarity=0.000 Sum_probs=92.9
Q ss_pred CCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010830 93 DSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172 (499)
Q Consensus 93 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 172 (499)
|-+..|+--|.......+.-+..||.+.--+...|+++.|.+.|+...+.++-...+...-.-++--.|++.-|.+-|..
T Consensus 79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~ 158 (297)
T COG4785 79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLA 158 (297)
T ss_pred hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHH
Confidence 33444555555444444555678888888888888888888888888887754443333333334446788888777766
Q ss_pred HHhCC-CCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCC
Q 010830 173 MSMHG-VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251 (499)
Q Consensus 173 m~~~g-~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 251 (499)
.-+.. -.|-...|--+.. .. -+..+|..-+.+--++...+.+-|+.+--.+.+. ..+ .+++++..- .-+-
T Consensus 159 fYQ~D~~DPfR~LWLYl~E---~k-~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgki-S~e---~l~~~~~a~-a~~n 229 (297)
T COG4785 159 FYQDDPNDPFRSLWLYLNE---QK-LDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKI-SEE---TLMERLKAD-ATDN 229 (297)
T ss_pred HHhcCCCChHHHHHHHHHH---hh-CCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhc-cHH---HHHHHHHhh-ccch
Confidence 64432 2232333333322 12 4555555544433333222233333222211111 111 222222211 0000
Q ss_pred -----chHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC
Q 010830 252 -----EHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283 (499)
Q Consensus 252 -----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 283 (499)
-=..||-.+..-+...|+.++|..+|+-....
T Consensus 230 ~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 230 TSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 01235666667777777777777777655543
No 225
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.40 E-value=0.12 Score=48.54 Aligned_cols=68 Identities=7% Similarity=-0.153 Sum_probs=60.3
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 010830 109 QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSL---PTFASIFDSYCGAGKYDEAVMSFDVMSMH 176 (499)
Q Consensus 109 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 176 (499)
.+.+...|+.+..+|.+.|++++|+..|++..+.++.+. .+|..+..+|...|++++|++.+++..+.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 566788999999999999999999999999999887665 45999999999999999999999998864
No 226
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.37 E-value=0.32 Score=47.37 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHH
Q 010830 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280 (499)
Q Consensus 217 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m 280 (499)
..+...+...+.+...+-.|-++|..|-. ...+++.....++|.+|+.+-+..
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD-----------~ksiVqlHve~~~W~eAFalAe~h 799 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGD-----------LKSLVQLHVETQRWDEAFALAEKH 799 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhcc-----------HHHHhhheeecccchHhHhhhhhC
Confidence 33444444444455555556666655521 123445555566666666555543
No 227
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.34 E-value=1.3 Score=44.19 Aligned_cols=322 Identities=11% Similarity=0.111 Sum_probs=174.5
Q ss_pred CCCCCHHHHH-----HHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHhCCCC
Q 010830 108 GQRLSPYAWN-----LMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK---YDEAVMSFDVMSMHGVE 179 (499)
Q Consensus 108 ~~~~~~~~~~-----~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~ 179 (499)
|.+.+..-|. .+|+-+...+.+..|+++-..+..........|......+.+..+ -+.+..+=+++.. ..
T Consensus 427 gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~-~~- 504 (829)
T KOG2280|consen 427 GIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA-KL- 504 (829)
T ss_pred CccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcc-cC-
Confidence 5555555443 456667777788888877766654443335566777777776642 2222222222221 12
Q ss_pred cCHHHHHHHHHHHHccCCchHHHHHHHHHHhc---c--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcc-------
Q 010830 180 QDVVAVNSLLSAICRQENQTSRALEFLNRVKK---I--VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF------- 247 (499)
Q Consensus 180 p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~---~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------- 247 (499)
....+|..+.+..... |+.+.|..+++.-.. . .-.+..-+...+.-+.+.|+.+-...++.++..+.
T Consensus 505 ~~~iSy~~iA~~Ay~~-GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~ 583 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQE-GRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFM 583 (829)
T ss_pred CCceeHHHHHHHHHhc-CcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 3334555555555556 888888887765322 0 11233345556666777788777777777665531
Q ss_pred --CCCCchHHhHHHHHH--------HHhcCCCHHHHHHHHH--HHh----hCCCCCCHhhHHHHHHHHHHcCCHhHH---
Q 010830 248 --EWNPEHVLAYETFLI--------TLIRGKQVDEALKFLR--VMK----GENCFPTLKFFSNALDILVKLNDSTHA--- 308 (499)
Q Consensus 248 --~~~p~~~~~~~~li~--------~~~~~~~~~~a~~~~~--~m~----~~~~~p~~~~~~~li~~~~~~~~~~~a--- 308 (499)
...|.....|.-+++ .+...++-.++..-|. ... ..|..|+ .....+++.+.....-.
T Consensus 584 ~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka 660 (829)
T KOG2280|consen 584 TLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKA 660 (829)
T ss_pred HHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHH
Confidence 111211112222221 0111112122222111 100 0122222 22334444444331111
Q ss_pred -------HHHHHHHHhc-CCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHH
Q 010830 309 -------VQLWDIMVGI-GFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEV 380 (499)
Q Consensus 309 -------~~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 380 (499)
.++.+.+..+ | ..-...+.+--+.-+...|+..+|.++-.+.+ -||...|..-+.+++..+++++-
T Consensus 661 ~ed~~kLl~lQ~~Le~q~~--~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeL 734 (829)
T KOG2280|consen 661 LEDQMKLLKLQRTLEDQFG--GSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEEL 734 (829)
T ss_pred HHHHHHHHHHHHHHHHHhc--cccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHH
Confidence 1111222211 1 11222344455566677788888887766664 37888899899999999998876
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHH
Q 010830 381 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 456 (499)
Q Consensus 381 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 456 (499)
+++-+.+. ++.-|.-++.+|.+.|+.++|.+++-+... . .-...+|.+.|++.+|.++--+
T Consensus 735 ekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l----~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 735 EKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG-----L----QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC-----h----HHHHHHHHHhccHHHHHHHHHH
Confidence 66554432 245677888999999999999988875422 1 1467788899999888776543
No 228
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.29 E-value=0.4 Score=46.80 Aligned_cols=142 Identities=13% Similarity=0.041 Sum_probs=75.3
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCC-CCCH------HHHHHHHHHHHh----cCChhHHH
Q 010830 99 VDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSL------PTFASIFDSYCG----AGKYDEAV 167 (499)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~------~~~~~li~~~~~----~g~~~~A~ 167 (499)
.-+|+.+....|| ....+++..+=.||-+.+++.+.+..+.+ +-.+ -.|..++..++. ....+.|.
T Consensus 177 ~G~f~L~lSlLPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~ 253 (468)
T PF10300_consen 177 FGLFNLVLSLLPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAE 253 (468)
T ss_pred HHHHHHHHHhCCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHH
Confidence 3445555444444 44566667777788888888877766544 2221 234444444433 33566677
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhc---c-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010830 168 MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK---I-VDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243 (499)
Q Consensus 168 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~---~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 243 (499)
++++.+.+. .|+...|...-.-+.+..|+.++|.+.|+.... . .+.....+--+.-.+.-.+++++|.+.|..+
T Consensus 254 ~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L 331 (468)
T PF10300_consen 254 ELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRL 331 (468)
T ss_pred HHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHH
Confidence 777777655 566666655554444444667777766665321 0 0111222333333344445555555555555
Q ss_pred hH
Q 010830 244 VE 245 (499)
Q Consensus 244 ~~ 245 (499)
.+
T Consensus 332 ~~ 333 (468)
T PF10300_consen 332 LK 333 (468)
T ss_pred Hh
Confidence 44
No 229
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.25 E-value=0.12 Score=48.62 Aligned_cols=66 Identities=20% Similarity=0.147 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchH---HhHHHHHHHHhcCCCHHHHHHHHHHHhhC
Q 010830 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV---LAYETFLITLIRGKQVDEALKFLRVMKGE 283 (499)
Q Consensus 215 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 283 (499)
.+...++.+..+|.+.|++++|...|++..+ +.|++. .+|..+..+|.+.|+.++|++.+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456666666677777777777777766643 355444 23666777777777777777777666654
No 230
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.22 E-value=1 Score=41.85 Aligned_cols=97 Identities=16% Similarity=0.208 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCcCHHHHHHHHHHHHc---cCCchHHHHHHHHH-HhccCCCCHH
Q 010830 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG---VEQDVVAVNSLLSAICR---QENQTSRALEFLNR-VKKIVDPDGD 218 (499)
Q Consensus 146 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~ll~~~~~---~~~~~~~a~~~~~~-~~~~~~~~~~ 218 (499)
+..+...++-.|....+++...++.+.|.... +.-....--...-++-+ . |+.++|+.++.. +.+...++..
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~-gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKP-GDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccC-CCHHHHHHHHHHHHhccCCCChH
Confidence 44444455555666666666666666665431 00011111111112222 3 666666666655 4444455555
Q ss_pred HHHHHHHHHHh---------cCCHHHHHHHHHHH
Q 010830 219 SFAILLEGWEK---------EGNVEEANKTFGEM 243 (499)
Q Consensus 219 ~~~~ll~~~~~---------~g~~~~a~~~~~~~ 243 (499)
+|..+...|-. ....++|...|.+-
T Consensus 219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kg 252 (374)
T PF13281_consen 219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKG 252 (374)
T ss_pred HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHH
Confidence 66555554421 11245555555554
No 231
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.21 E-value=0.39 Score=46.88 Aligned_cols=161 Identities=13% Similarity=0.046 Sum_probs=82.7
Q ss_pred HHHHHHHccCCchHHHHHHHHHHhcc--CCCC-----HHHHHHHHHHHHh----cCCHHHHHHHHHHHhHccCCCCchHH
Q 010830 187 SLLSAICRQENQTSRALEFLNRVKKI--VDPD-----GDSFAILLEGWEK----EGNVEEANKTFGEMVERFEWNPEHVL 255 (499)
Q Consensus 187 ~ll~~~~~~~~~~~~a~~~~~~~~~~--~~~~-----~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~ 255 (499)
.++....-. ||-+.+++.+.+..+. +.-. .-.|...+..++. ..+.+.|.++++.+.++ -|+...
T Consensus 193 kll~~vGF~-gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~l 268 (468)
T PF10300_consen 193 KLLSFVGFS-GDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSAL 268 (468)
T ss_pred HHHhhcCcC-CcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHH
Confidence 334444444 5555555555554331 1111 1233344433332 34566777777777655 553333
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHhhCC-CC--CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHH
Q 010830 256 AYETFLITLIRGKQVDEALKFLRVMKGEN-CF--PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAV 332 (499)
Q Consensus 256 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~--p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 332 (499)
-.-.-.+.+...|++++|++.|++..... -. .....+--+.-++.-..++++|.+.|..+.+.. .-+..+|.-+
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s---~WSka~Y~Y~ 345 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES---KWSKAFYAYL 345 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc---ccHHHHHHHH
Confidence 22333455566677777777777544311 11 112233345555666777777777777777654 2233333333
Q ss_pred HHH-HHcCCCh-------HHHHHHHHHHHH
Q 010830 333 IGL-LCNNDDV-------DNVFRFFDQMVF 354 (499)
Q Consensus 333 i~~-~~~~~~~-------~~a~~~~~~m~~ 354 (499)
..+ +...++. ++|.++|.+...
T Consensus 346 ~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 346 AAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 322 2344555 777777776654
No 232
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.16 E-value=0.76 Score=39.77 Aligned_cols=183 Identities=11% Similarity=0.073 Sum_probs=96.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCcCHHHHHHHHH
Q 010830 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL---SLPTFASIFDSYCGAGKYDEAVMSFDVMSMH-GVEQDVVAVNSLLS 190 (499)
Q Consensus 115 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~ 190 (499)
.|+.-+ .-.+.|++++|.+.|+.+....+- ...+.-.++.++-+.++++.|+..+++..+. +-.||. .|..-|.
T Consensus 37 LY~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~Ylk 114 (254)
T COG4105 37 LYNEGL-TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLK 114 (254)
T ss_pred HHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHH
Confidence 444433 346778888888888888877643 3456666777788888888888888887655 333333 3444444
Q ss_pred HHHcc------CCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHH
Q 010830 191 AICRQ------ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264 (499)
Q Consensus 191 ~~~~~------~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~ 264 (499)
+++.- ..|...+..-+..++. ++.-|=...-...|......+... =...=-.+.+.|
T Consensus 115 gLs~~~~i~~~~rDq~~~~~A~~~f~~-----------~i~ryPnS~Ya~dA~~~i~~~~d~------LA~~Em~IaryY 177 (254)
T COG4105 115 GLSYFFQIDDVTRDQSAARAAFAAFKE-----------LVQRYPNSRYAPDAKARIVKLNDA------LAGHEMAIARYY 177 (254)
T ss_pred HHHHhccCCccccCHHHHHHHHHHHHH-----------HHHHCCCCcchhhHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 44321 1344444444444432 111111111112222222222111 000112345666
Q ss_pred hcCCCHHHHHHHHHHHhhCCCCCC---HhhHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 010830 265 IRGKQVDEALKFLRVMKGENCFPT---LKFFSNALDILVKLNDSTHAVQLWDIMVG 317 (499)
Q Consensus 265 ~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 317 (499)
.+.|.+..|..-+++|.+. .+-+ ...+-.+..+|...|-.++|.+.-+-+..
T Consensus 178 ~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 178 LKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 7777777777777777664 2222 23344456677777777777666555544
No 233
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.11 E-value=1.7 Score=43.37 Aligned_cols=303 Identities=12% Similarity=0.091 Sum_probs=177.8
Q ss_pred hcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCh--HHHH-HHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHH
Q 010830 91 SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRF--EQMW-NAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAV 167 (499)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~--~~a~-~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~ 167 (499)
+.+.+..|.++-.|+.....-+...|......+.+..+. +++. .+-+++... .....+|..+.+.....|+.+-|.
T Consensus 449 ~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~~~~iSy~~iA~~Ay~~GR~~LA~ 527 (829)
T KOG2280|consen 449 DRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-LTPGISYAAIARRAYQEGRFELAR 527 (829)
T ss_pred hcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-CCCceeHHHHHHHHHhcCcHHHHH
Confidence 356788899999888553333356777777777766322 2333 333333332 344567888999899999999999
Q ss_pred HHHHHHHhCCCC----cCHHHHHHHHHHHHccCCchHHHHHHHHHHhcc------------CCCCHHHHHHHHHH-----
Q 010830 168 MSFDVMSMHGVE----QDVVAVNSLLSAICRQENQTSRALEFLNRVKKI------------VDPDGDSFAILLEG----- 226 (499)
Q Consensus 168 ~~~~~m~~~g~~----p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~------------~~~~~~~~~~ll~~----- 226 (499)
.+++.=...+.. -+..-+...+.-+... |+.+....++-.++.. .+.....|.-+++-
T Consensus 528 kLle~E~~~~~qV~lLL~m~~~~~AL~kaies-~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~ 606 (829)
T KOG2280|consen 528 KLLELEPRSGEQVPLLLKMKDSSLALKKAIES-GDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRAT 606 (829)
T ss_pred HHHhcCCCccchhHHHhccchHHHHHHHHHhc-CCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhh
Confidence 988753322211 1233445556666666 7777777766655431 12222233333221
Q ss_pred ---HHhcCCHHHHHHHH--HHHhH---ccCCCCchHHhHHHHHHHHhcCCCH----------HHHHHHHHHHhh-CCCCC
Q 010830 227 ---WEKEGNVEEANKTF--GEMVE---RFEWNPEHVLAYETFLITLIRGKQV----------DEALKFLRVMKG-ENCFP 287 (499)
Q Consensus 227 ---~~~~g~~~~a~~~~--~~~~~---~~~~~p~~~~~~~~li~~~~~~~~~----------~~a~~~~~~m~~-~~~~p 287 (499)
+...++-..+...| +.... ..+..| ......+.+.+.... .+-+++.+.+.. .|...
T Consensus 607 l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~----~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f 682 (829)
T KOG2280|consen 607 LYDFYNQDDNHQALASFHLQASYAAETIEGRIP----ALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSF 682 (829)
T ss_pred hhhhhhcccchhhhhhhhhhhhhhhhhhcccch----hHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 11122222222111 11000 012223 233344444444331 122222333332 23334
Q ss_pred CHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHH
Q 010830 288 TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMI 367 (499)
Q Consensus 288 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 367 (499)
..-+.+--+.-+...|+..+|.++-.+.+ -||-..|-.=+.+++..+++++-+++-+.++ .+.-|.-.
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fk------ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PF 750 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFK------IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPF 750 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcC------CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhH
Confidence 44556666777888999999998877664 4788888888999999999988776655443 35667888
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHH
Q 010830 368 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 420 (499)
Q Consensus 368 l~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 420 (499)
+.+|.+.|+.++|.+++.+.-. +.-...+|.+.|++.+|.++--
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCC---------hHHHHHHHHHhccHHHHHHHHH
Confidence 9999999999999999866521 1156788889999988877643
No 234
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.11 E-value=0.81 Score=39.59 Aligned_cols=55 Identities=24% Similarity=0.280 Sum_probs=35.2
Q ss_pred HhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhh
Q 010830 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282 (499)
Q Consensus 228 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 282 (499)
.+.|++++|.+.|+.+..++...|-...+.-.++.++-+.+++++|+..+++...
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ 99 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIR 99 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3567777777777777666555554445555666666677777777777666554
No 235
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.10 E-value=0.28 Score=47.16 Aligned_cols=105 Identities=21% Similarity=0.116 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 010830 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI 192 (499)
Q Consensus 113 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 192 (499)
....+.+++-+-+.|..+.|+++-..-.. -.....+.|+++.|.++.++. .+...|..|-...
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-----------rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~A 357 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPDH-----------RFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-----------HHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChHH-----------HhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHH
Confidence 33455555555555555555555322221 133344445555555443221 2344555555555
Q ss_pred HccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010830 193 CRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243 (499)
Q Consensus 193 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 243 (499)
.+. |+++.|++.|.+.+. |..|+-.|.-.|+.+...++.+..
T Consensus 358 L~~-g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 358 LRQ-GNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHT-TBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHc-CCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 555 555555555554432 334444444455554444444443
No 236
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.05 E-value=0.55 Score=37.21 Aligned_cols=43 Identities=9% Similarity=0.096 Sum_probs=20.6
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Q 010830 118 LMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGA 160 (499)
Q Consensus 118 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~ 160 (499)
.++..+...+........++.+...+..+...++.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH
Confidence 3444444444555555555555444444444555555555443
No 237
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.04 E-value=0.026 Score=39.44 Aligned_cols=63 Identities=14% Similarity=0.225 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhHc---cCC-CCchHHhHHHHHHHHhcCCCHHHHHHHHHHH
Q 010830 218 DSFAILLEGWEKEGNVEEANKTFGEMVER---FEW-NPEHVLAYETFLITLIRGKQVDEALKFLRVM 280 (499)
Q Consensus 218 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~-~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m 280 (499)
.+++.+...|...|++++|++.|++..+. .|- .|....+++.+..++...|++++|++.+++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34556666666666666666666655432 111 1112345555666666666666666666554
No 238
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.00 E-value=1.1 Score=40.34 Aligned_cols=102 Identities=6% Similarity=0.068 Sum_probs=57.3
Q ss_pred hhHHHHHHHHHHcCCHh---HHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHH
Q 010830 290 KFFSNALDILVKLNDST---HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM 366 (499)
Q Consensus 290 ~~~~~li~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 366 (499)
.++..++.+|...+..+ +|..+++.+.... +-...++-.-+..+.+.++.+.+.+++.+|... +.-....+..
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~---~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~ 160 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY---GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC---CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHH
Confidence 35556677777666544 4555555554432 223445545566666678888888888888875 2213344555
Q ss_pred HHHHH---HhcCCHhHHHHHHHHHHHCCCCCCh
Q 010830 367 IFECL---IKNKRVHEVEKFFHEMIKNEWQPTP 396 (499)
Q Consensus 367 ll~~~---~~~g~~~~a~~~~~~~~~~~~~p~~ 396 (499)
++..+ ... ....|...+..++...+.|..
T Consensus 161 ~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 161 ILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 44444 332 334566666666655445544
No 239
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.94 E-value=2.8 Score=44.33 Aligned_cols=110 Identities=13% Similarity=0.083 Sum_probs=67.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChh--hHHHHHHHH
Q 010830 329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL--NCATAITML 406 (499)
Q Consensus 329 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~--~~~~li~~~ 406 (499)
|.+....+...+.+++|--.|+..-+ ..-.+.+|...|+|.+|..+..++... -+.. +-..|+.-+
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHH
Confidence 34444444556677777666655433 233566778888888888887776432 1221 224566677
Q ss_pred hccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 010830 407 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458 (499)
Q Consensus 407 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 458 (499)
...++.-+|-++..+.... ....+..||+...|++|.++...-.
T Consensus 1010 ~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 7778888888877766541 1223455677777888877765443
No 240
>PRK15331 chaperone protein SicA; Provisional
Probab=95.87 E-value=0.052 Score=43.39 Aligned_cols=85 Identities=13% Similarity=-0.027 Sum_probs=61.5
Q ss_pred hcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 010830 91 SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSF 170 (499)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 170 (499)
..|++++|..+|..+..-.+.|..-|..|...+-..+++++|+..|...-..++.|+..+-....+|...|+.+.|...|
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f 128 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCF 128 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHH
Confidence 35777888888877766566666667777777777778888888777776666555556666777777778888888777
Q ss_pred HHHHh
Q 010830 171 DVMSM 175 (499)
Q Consensus 171 ~~m~~ 175 (499)
+....
T Consensus 129 ~~a~~ 133 (165)
T PRK15331 129 ELVNE 133 (165)
T ss_pred HHHHh
Confidence 77665
No 241
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.85 E-value=0.024 Score=39.63 Aligned_cols=64 Identities=17% Similarity=0.195 Sum_probs=37.6
Q ss_pred hHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC----CC-CCC-HhhHHHHHHHHHHcCCHhHHHHHHHHHH
Q 010830 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGE----NC-FPT-LKFFSNALDILVKLNDSTHAVQLWDIMV 316 (499)
Q Consensus 253 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~ 316 (499)
...+|+.+...|...|++++|+..|++..+. |- .|+ ..++..+..++...|++++|++.+++..
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3456777778888888888888887765532 10 011 3344555555666666666666665544
No 242
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.79 E-value=0.4 Score=46.16 Aligned_cols=78 Identities=17% Similarity=0.100 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 010830 148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW 227 (499)
Q Consensus 148 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~ 227 (499)
.-.+.++..+-+.|..+.|+++-.+-. .-.....+. |+++.|.++.++. .+...|..|.+..
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~l-g~L~~A~~~a~~~-----~~~~~W~~Lg~~A 357 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQL-GNLDIALEIAKEL-----DDPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHC-T-HHHHHHHCCCC-----STHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhc-CCHHHHHHHHHhc-----CcHHHHHHHHHHH
Confidence 335555555555555555555532221 112222333 5555554443222 2344555555555
Q ss_pred HhcCCHHHHHHHHHHH
Q 010830 228 EKEGNVEEANKTFGEM 243 (499)
Q Consensus 228 ~~~g~~~~a~~~~~~~ 243 (499)
.+.|+++-|++.|.+.
T Consensus 358 L~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 358 LRQGNIELAEECYQKA 373 (443)
T ss_dssp HHTTBHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHhh
Confidence 5555555555555444
No 243
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.75 E-value=0.099 Score=45.35 Aligned_cols=72 Identities=19% Similarity=0.218 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcC----------------CCHHHHHHHHHHHhhCCCCCCHhhHHH
Q 010830 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG----------------KQVDEALKFLRVMKGENCFPTLKFFSN 294 (499)
Q Consensus 231 g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~----------------~~~~~a~~~~~~m~~~~~~p~~~~~~~ 294 (499)
+.++-....++.|.+ +|+.- |..+|+.|++.+=+. .+-+-+++++++|...|+.||..+-..
T Consensus 86 ~HveFIy~ALk~m~e-yGVer-Dl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~ 163 (406)
T KOG3941|consen 86 THVEFIYTALKYMKE-YGVER-DLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDI 163 (406)
T ss_pred chHHHHHHHHHHHHH-hcchh-hHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHH
Confidence 344444444555544 45555 555555555554443 234557888888988899999888888
Q ss_pred HHHHHHHcCC
Q 010830 295 ALDILVKLND 304 (499)
Q Consensus 295 li~~~~~~~~ 304 (499)
+++++.+.+-
T Consensus 164 lvn~FGr~~~ 173 (406)
T KOG3941|consen 164 LVNAFGRWNF 173 (406)
T ss_pred HHHHhccccc
Confidence 8888877664
No 244
>PRK15331 chaperone protein SicA; Provisional
Probab=95.66 E-value=0.2 Score=40.08 Aligned_cols=21 Identities=5% Similarity=-0.146 Sum_probs=8.7
Q ss_pred HHHHHcCCChHHHHHHHHHHH
Q 010830 333 IGLLCNNDDVDNVFRFFDQMV 353 (499)
Q Consensus 333 i~~~~~~~~~~~a~~~~~~m~ 353 (499)
..+|...|+.+.|...|+...
T Consensus 112 gqC~l~l~~~~~A~~~f~~a~ 132 (165)
T PRK15331 112 GQCQLLMRKAAKARQCFELVN 132 (165)
T ss_pred HHHHHHhCCHHHHHHHHHHHH
Confidence 333444444444444444433
No 245
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.21 Score=45.85 Aligned_cols=138 Identities=14% Similarity=0.089 Sum_probs=72.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCH
Q 010830 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233 (499)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 233 (499)
...|.+.|++..|...|++.+.. |. +.+. -+.++.... . ..-..+++.+..+|.+.+++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~-~~~ee~~~~-~------~~k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRS-FDEEEQKKA-E------ALKLACHLNLAACYLKLKEY 273 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-cccc-CCHHHHHHH-H------HHHHHHhhHHHHHHHhhhhH
Confidence 34678888899888888876532 00 0000 111111111 1 12234455566666666666
Q ss_pred HHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHH-HHHHHHHcCCH-hHHHHH
Q 010830 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN-ALDILVKLNDS-THAVQL 311 (499)
Q Consensus 234 ~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-li~~~~~~~~~-~~a~~~ 311 (499)
..|++..+... ...|+|+-....-..++...|+++.|+..|+++.+.. |+...... ++.+-.+.... +...++
T Consensus 274 ~~Ai~~c~kvL---e~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el~~l~~k~~~~~~kekk~ 348 (397)
T KOG0543|consen 274 KEAIESCNKVL---ELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE--PSNKAARAELIKLKQKIREYEEKEKKM 348 (397)
T ss_pred HHHHHHHHHHH---hcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666663 3355566666666666666677777777766666543 44333333 33333333332 233556
Q ss_pred HHHHHh
Q 010830 312 WDIMVG 317 (499)
Q Consensus 312 ~~~~~~ 317 (499)
|..|..
T Consensus 349 y~~mF~ 354 (397)
T KOG0543|consen 349 YANMFA 354 (397)
T ss_pred HHHHhh
Confidence 666654
No 246
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.55 E-value=0.33 Score=42.28 Aligned_cols=97 Identities=20% Similarity=0.160 Sum_probs=48.1
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHhccCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHH
Q 010830 184 AVNSLLSAICRQENQTSRALEFLNRVKKIVDPD---GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF 260 (499)
Q Consensus 184 ~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~l 260 (499)
.|+.-+..+.. |++..|..-|....++.+.+ ...+.-|...+...|++++|..+|..+.+.++-.|.-+..+--|
T Consensus 144 ~Y~~A~~~~ks--gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLYKS--GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 34444444332 44555555555544433222 22344455555566666666666655555544444333444445
Q ss_pred HHHHhcCCCHHHHHHHHHHHhh
Q 010830 261 LITLIRGKQVDEALKFLRVMKG 282 (499)
Q Consensus 261 i~~~~~~~~~~~a~~~~~~m~~ 282 (499)
..+..+.|+.++|-..|+++.+
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHH
Confidence 5555555555555555555444
No 247
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.47 E-value=0.98 Score=35.77 Aligned_cols=126 Identities=10% Similarity=0.114 Sum_probs=64.7
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcc
Q 010830 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 409 (499)
Q Consensus 330 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 409 (499)
..++..+...+.......+++.+...+. .+....+.++..|++.+. .+..+.++. ..+......+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 3455555555566666666666665542 455566666666665432 223333321 12333344566666666
Q ss_pred CChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhC-CChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHh
Q 010830 410 DEPEIAIEIWNYILENGILPLEASANELLVGLRNL-GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 478 (499)
Q Consensus 410 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 478 (499)
+.++++..++.++.. |...+..+... ++++.|.+++++- -+...|..++..+..
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALLD 137 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHHc
Confidence 666666666665421 12223333333 6666666666541 144566666655543
No 248
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.40 E-value=0.063 Score=32.50 Aligned_cols=41 Identities=15% Similarity=0.358 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHH
Q 010830 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFL 261 (499)
Q Consensus 218 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li 261 (499)
.++..+...|.+.|++++|.++|++..+. .|+|...|..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~---~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL---DPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCCHHHHHHhh
Confidence 35667788888888888888888888665 777776666554
No 249
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.29 E-value=0.69 Score=36.21 Aligned_cols=58 Identities=17% Similarity=0.141 Sum_probs=34.6
Q ss_pred HHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 010830 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284 (499)
Q Consensus 227 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 284 (499)
..+.|++++|.+.|+.+..++...+-....--.++.+|.+.+++++|...+++..+..
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 3455666666666666666544444344455556666666666666666666655543
No 250
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.28 E-value=0.43 Score=41.60 Aligned_cols=105 Identities=17% Similarity=0.166 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCcC-HHHHHH
Q 010830 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV---LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH-GVEQD-VVAVNS 187 (499)
Q Consensus 113 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~-~~~~~~ 187 (499)
...|+.-++. .+.|++..|...|....+..+ -....+-.|...+...|++++|..+|..+.+. +-.|. ...+--
T Consensus 142 ~~~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 142 TKLYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred hHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 4477777764 556678888888888888774 34556778888888888888888888888664 22222 244555
Q ss_pred HHHHHHccCCchHHHHHHHHHHhccCCCCHHH
Q 010830 188 LLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219 (499)
Q Consensus 188 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 219 (499)
|-....+. |+.++|..+|+++.+..+.+..+
T Consensus 221 lg~~~~~l-~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 221 LGVSLGRL-GNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHHh-cCHHHHHHHHHHHHHHCCCCHHH
Confidence 55556666 88888888888887766555443
No 251
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.27 E-value=3.2 Score=40.51 Aligned_cols=333 Identities=12% Similarity=0.081 Sum_probs=189.1
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHH
Q 010830 109 QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSL 188 (499)
Q Consensus 109 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 188 (499)
...+...|+.+|.---+..+.+.+..+++.+...-+.--.-|......=.+.|..+.+.++|++-+. |++-+...|...
T Consensus 41 ~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y 119 (577)
T KOG1258|consen 41 DSLDFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSY 119 (577)
T ss_pred chhcccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHH
Confidence 4445567777777666666677778888888776555555677777777788889999999988774 456677778777
Q ss_pred HHHHHccCCchHHHHHHHHHHhccCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHh
Q 010830 189 LSAICRQENQTSRALEFLNRVKKIVD---PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265 (499)
Q Consensus 189 l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~ 265 (499)
+.-+....|+.+.....|+..+..+. .....|...+..-..++++.....+++++.+. -...|+..-.-|.
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei------P~~~~~~~f~~f~ 193 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI------PLHQLNRHFDRFK 193 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh------hhhHhHHHHHHHH
Confidence 77777666888888888888776332 24456777777778888899999999988764 1223333322222
Q ss_pred c---C------CCHHHHHHHHHHHhhC-C---CCCCHhhHHH-----------------HH--------HHHHHcCCHhH
Q 010830 266 R---G------KQVDEALKFLRVMKGE-N---CFPTLKFFSN-----------------AL--------DILVKLNDSTH 307 (499)
Q Consensus 266 ~---~------~~~~~a~~~~~~m~~~-~---~~p~~~~~~~-----------------li--------~~~~~~~~~~~ 307 (499)
+ . ...+++.++-...... . .......... ++ .++-..-....
T Consensus 194 ~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~ 273 (577)
T KOG1258|consen 194 QLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEE 273 (577)
T ss_pred HHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHH
Confidence 2 1 2333333333222210 0 0000001100 00 11111111222
Q ss_pred HHHHHHHHHhcC-CCC----CCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHH
Q 010830 308 AVQLWDIMVGIG-FNL----MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 382 (499)
Q Consensus 308 a~~~~~~~~~~~-~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 382 (499)
....++.-++.- +.+ .++..+|+..+.--.+.|+.+.+.-+|+...-. +..=...|-..+.-....|+.+-|..
T Consensus 274 kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~ 352 (577)
T KOG1258|consen 274 KRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANN 352 (577)
T ss_pred HHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHH
Confidence 222222222211 111 225667888888888888888888888876541 11112334444444445588888887
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHh-ccCChhHHHHHHHHHHHCCCCChHHH-HHHHHHHHHhCCChHHHHH
Q 010830 383 FFHEMIKNEWQPTPLNCATAITMLL-DADEPEIAIEIWNYILENGILPLEAS-ANELLVGLRNLGRLSDVRR 452 (499)
Q Consensus 383 ~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~g~~~~a~~ 452 (499)
++....+--.+-.+ ....+-..+. ..|+.+.|..+++.+.+.- |+... -..-+....+.|..+.+..
T Consensus 353 ~~~~~~~i~~k~~~-~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 353 VLARACKIHVKKTP-IIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred HHHhhhhhcCCCCc-HHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhH
Confidence 77776664332222 2222222233 4578888888888887633 43322 1122334556677777663
No 252
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.23 E-value=5.1 Score=42.55 Aligned_cols=33 Identities=6% Similarity=0.049 Sum_probs=22.4
Q ss_pred CCCCCHHHHHHHHHHHHhCC--ChHHHHHHHHHHHh
Q 010830 108 GQRLSPYAWNLMVDVLGKNG--RFEQMWNAVRVMKE 141 (499)
Q Consensus 108 ~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~ 141 (499)
...|+ .-.-.+|.+|++.+ .++.|+....+...
T Consensus 786 ~~~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 786 RRAPD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hcCcc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 34455 44556778888887 77777777777664
No 253
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.23 E-value=0.07 Score=32.30 Aligned_cols=39 Identities=10% Similarity=0.120 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHH
Q 010830 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASI 153 (499)
Q Consensus 115 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~l 153 (499)
+|..+...|.+.|++++|+++|++..+..+.+...+..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 455566666666666666666666666665555555444
No 254
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=2.2 Score=37.83 Aligned_cols=162 Identities=16% Similarity=0.095 Sum_probs=104.4
Q ss_pred hhHHHHHHhcCCCCCHHHHHHHHH-hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 010830 66 DDIESALACTGIIPTPDLVHEVLQ-LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV 144 (499)
Q Consensus 66 ~~l~~~l~~~~~~~~~~~~~~~l~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 144 (499)
.++...+.+....+....+..... ...++...|...|+.+....+-+...--.+...|...|+++.|..++..+.....
T Consensus 120 sqlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~ 199 (304)
T COG3118 120 SQLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ 199 (304)
T ss_pred HHHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccch
Confidence 356677776666555555544444 4578899999999888776666678888899999999999999999999876653
Q ss_pred C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc-CHHHHHHHHHHHHccCCchHHHHHHHHHH-hc-cCCCCHHHH
Q 010830 145 L-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQ-DVVAVNSLLSAICRQENQTSRALEFLNRV-KK-IVDPDGDSF 220 (499)
Q Consensus 145 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~~ 220 (499)
. .......-|..+.+.....+...+-...-. .| |...-..+-..+... |+.+.|.+.+-.+ ++ ...-|...-
T Consensus 200 ~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~-g~~e~Ale~Ll~~l~~d~~~~d~~~R 275 (304)
T COG3118 200 DKAAHGLQAQIELLEQAAATPEIQDLQRRLAA---DPDDVEAALALADQLHLV-GRNEAALEHLLALLRRDRGFEDGEAR 275 (304)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh---CCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcccccCcHHH
Confidence 2 222223345555555666655555555544 45 566666666777777 8888888776554 33 122233344
Q ss_pred HHHHHHHHhcC
Q 010830 221 AILLEGWEKEG 231 (499)
Q Consensus 221 ~~ll~~~~~~g 231 (499)
..++..+.--|
T Consensus 276 k~lle~f~~~g 286 (304)
T COG3118 276 KTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHhcC
Confidence 44444444444
No 255
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.00 E-value=2.1 Score=36.77 Aligned_cols=53 Identities=17% Similarity=0.139 Sum_probs=23.1
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHH---CCCCChHHHHHHHHHHHHhCCChHHHHHH
Q 010830 400 ATAITMLLDADEPEIAIEIWNYILE---NGILPLEASANELLVGLRNLGRLSDVRRF 453 (499)
Q Consensus 400 ~~li~~~~~~g~~~~a~~~~~~m~~---~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 453 (499)
...|-.+....++..|.+.++.-.+ ..-.-+..+...|+.+| ..||.+++.++
T Consensus 194 va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 194 VAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 3334444444555555555554222 11122334445555544 33555554443
No 256
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.93 E-value=0.38 Score=42.60 Aligned_cols=78 Identities=13% Similarity=0.202 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCcCHHHHHHH
Q 010830 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM-----HGVEQDVVAVNSL 188 (499)
Q Consensus 114 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~l 188 (499)
.++..++..+...|+++.+.+.++++...++-+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 35566667777777777777777777777777777777777777777777777777776643 4666666665555
Q ss_pred HHH
Q 010830 189 LSA 191 (499)
Q Consensus 189 l~~ 191 (499)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 544
No 257
>PRK11906 transcriptional regulator; Provisional
Probab=94.92 E-value=3 Score=39.70 Aligned_cols=33 Identities=9% Similarity=0.077 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHHhHccCCCCchHHhHHHHHHHH
Q 010830 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264 (499)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~ 264 (499)
..+.|..+|.+......+.|+....|..+..++
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h 305 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECH 305 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHH
Confidence 355677788887644466776666666555444
No 258
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.82 E-value=0.73 Score=46.45 Aligned_cols=281 Identities=12% Similarity=0.128 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHH----hCC----------C---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010830 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMK----EDG----------V---LSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175 (499)
Q Consensus 113 ~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~~----------~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 175 (499)
....+.++.+|...+++-.-.-+++... ..+ + ........-+....+..-++.|..+-+.-
T Consensus 283 ~ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~-- 360 (933)
T KOG2114|consen 283 NSSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQ-- 360 (933)
T ss_pred ccchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhc--
Confidence 3455667777777766544333333222 111 1 12234556666677777777777665433
Q ss_pred CCCCcCHHHHHHHHHH----HHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCC
Q 010830 176 HGVEQDVVAVNSLLSA----ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251 (499)
Q Consensus 176 ~g~~p~~~~~~~ll~~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 251 (499)
..|..+...++.. +.+. |++++|...|-+-..-+.|. .++.-|.+...+.+-...++.+.++ |+.
T Consensus 361 ---~~d~d~~~~i~~kYgd~Ly~K-gdf~~A~~qYI~tI~~le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~-gla- 429 (933)
T KOG2114|consen 361 ---HLDEDTLAEIHRKYGDYLYGK-GDFDEATDQYIETIGFLEPS-----EVIKKFLDAQRIKNLTSYLEALHKK-GLA- 429 (933)
T ss_pred ---CCCHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHcccCChH-----HHHHHhcCHHHHHHHHHHHHHHHHc-ccc-
Confidence 2333333333332 2334 77777777766554434443 2445556666666666777777665 554
Q ss_pred chHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHH
Q 010830 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA 331 (499)
Q Consensus 252 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 331 (499)
+...-..|+.+|.+.++.++..++.+.-. .|.. ..-+...+..|.+.+-.++|.-+-..... +......
T Consensus 430 -~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-------he~vl~i 498 (933)
T KOG2114|consen 430 -NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-------HEWVLDI 498 (933)
T ss_pred -cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-------CHHHHHH
Confidence 33456677777777777777766665433 2322 11244566666666777766655444332 2233333
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHH-----HH
Q 010830 332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT-----ML 406 (499)
Q Consensus 332 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~-----~~ 406 (499)
+ +-..+++++|++.+..|.-...-+....|...+ . ....++...++-+......++........+. ..
T Consensus 499 l---le~~~ny~eAl~yi~slp~~e~l~~l~kyGk~L---l-~h~P~~t~~ili~~~t~~~~~~~~~~~s~~~~~~~~i~ 571 (933)
T KOG2114|consen 499 L---LEDLHNYEEALRYISSLPISELLRTLNKYGKIL---L-EHDPEETMKILIELITELNSQGKGKSLSNIPDSIEFIG 571 (933)
T ss_pred H---HHHhcCHHHHHHHHhcCCHHHHHHHHHHHHHHH---H-hhChHHHHHHHHHHHhhcCCCCCCchhhcCccchhhee
Confidence 3 334567778877776653211111222222211 1 2344555555555544322232222222221 11
Q ss_pred hccCChhHHHHHHHHHHH
Q 010830 407 LDADEPEIAIEIWNYILE 424 (499)
Q Consensus 407 ~~~g~~~~a~~~~~~m~~ 424 (499)
.-.+++......++.|.+
T Consensus 572 if~~~~~~~~~Fl~~~~E 589 (933)
T KOG2114|consen 572 IFSQNYQILLNFLESMSE 589 (933)
T ss_pred eeccCHHHHHHHHHHHHh
Confidence 234566666666665654
No 259
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.81 E-value=0.94 Score=34.54 Aligned_cols=91 Identities=20% Similarity=0.165 Sum_probs=64.8
Q ss_pred HHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHh---hHHHHHHHHHHc
Q 010830 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK---FFSNALDILVKL 302 (499)
Q Consensus 226 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~ 302 (499)
+.+..|+++.|++.|.+.. .+-|.....||.-..++.-.|+.++|++-+++..+..-.-+.. .|..-...|...
T Consensus 52 alaE~g~Ld~AlE~F~qal---~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQAL---CLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHH---HhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 4667889999999888874 4467777889999999988899999988888776632222222 233333456667
Q ss_pred CCHhHHHHHHHHHHhcC
Q 010830 303 NDSTHAVQLWDIMVGIG 319 (499)
Q Consensus 303 ~~~~~a~~~~~~~~~~~ 319 (499)
|+.+.|..=|+..-+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 77788877777777766
No 260
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.56 Score=43.22 Aligned_cols=138 Identities=14% Similarity=0.088 Sum_probs=86.5
Q ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchH
Q 010830 121 DVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS 200 (499)
Q Consensus 121 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 200 (499)
..|.+.|++..|..-|++....=. |.+.-+.++..... ..-..+++.+..++.+. +++.
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~------------~~~~~~~ee~~~~~--------~~k~~~~lNlA~c~lKl-~~~~ 274 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLE------------YRRSFDEEEQKKAE--------ALKLACHLNLAACYLKL-KEYK 274 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhh------------ccccCCHHHHHHHH--------HHHHHHhhHHHHHHHhh-hhHH
Confidence 467788888888888877543210 00001111111111 12234555666666666 7777
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHH-HHHHHH
Q 010830 201 RALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA-LKFLRV 279 (499)
Q Consensus 201 ~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a-~~~~~~ 279 (499)
.|++..++...-.++|.....--..+|...|+++.|+..|+++.+ +.|+|...-+.++..-.+.....+. .++|..
T Consensus 275 ~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k---~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 275 EAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK---LEPSNKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777666667777777777788888888888888888854 4777776666776666666554443 667777
Q ss_pred Hhh
Q 010830 280 MKG 282 (499)
Q Consensus 280 m~~ 282 (499)
|..
T Consensus 352 mF~ 354 (397)
T KOG0543|consen 352 MFA 354 (397)
T ss_pred Hhh
Confidence 754
No 261
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.76 E-value=1.3 Score=39.71 Aligned_cols=154 Identities=13% Similarity=0.049 Sum_probs=106.6
Q ss_pred HHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHH----HHHHHHHccCC
Q 010830 122 VLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN----SLLSAICRQEN 197 (499)
Q Consensus 122 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~----~ll~~~~~~~~ 197 (499)
.+--.|++.+|-..++++.+..+.|..+++..=.+|.-.|+.+.-...++++... ..+|...|. .+--++... |
T Consensus 112 i~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~-g 189 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEEC-G 189 (491)
T ss_pred HhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHh-c
Confidence 3445678888888888888888878888888888888899888888888887643 123432222 222334455 8
Q ss_pred chHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCch---HHhHHHHHHHHhcCCCHHHHH
Q 010830 198 QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH---VLAYETFLITLIRGKQVDEAL 274 (499)
Q Consensus 198 ~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~---~~~~~~li~~~~~~~~~~~a~ 274 (499)
-+++|++.-++..+..+.|.....++...+-..|+..++.++..+-... +.-.+ .+-|=...-.+...+.++.|+
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~--Wr~s~mlasHNyWH~Al~~iE~aeye~al 267 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD--WRQSWMLASHNYWHTALFHIEGAEYEKAL 267 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccc--hhhhhHHHhhhhHHHHHhhhcccchhHHH
Confidence 8888888888877767778888888888888888888888877665432 11101 112333445566668888888
Q ss_pred HHHHH
Q 010830 275 KFLRV 279 (499)
Q Consensus 275 ~~~~~ 279 (499)
++|+.
T Consensus 268 eIyD~ 272 (491)
T KOG2610|consen 268 EIYDR 272 (491)
T ss_pred HHHHH
Confidence 88865
No 262
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.71 E-value=3.2 Score=37.65 Aligned_cols=129 Identities=16% Similarity=0.304 Sum_probs=74.6
Q ss_pred hhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc--c---CCchHHHHHHHHHHhcc----CCCCHHHHHHHHHHHHhcCCH
Q 010830 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR--Q---ENQTSRALEFLNRVKKI----VDPDGDSFAILLEGWEKEGNV 233 (499)
Q Consensus 163 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~---~~~~~~a~~~~~~~~~~----~~~~~~~~~~ll~~~~~~g~~ 233 (499)
+++...+++.|.+.|+..+..+|-+....... . .....++..+|+.|++. ..++..++..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 55667788888888888888777664443333 1 02345677788888772 23455555555544 33332
Q ss_pred ----HHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCC---HHHHHHHHHHHhhCCCCCCHhhHHH
Q 010830 234 ----EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ---VDEALKFLRVMKGENCFPTLKFFSN 294 (499)
Q Consensus 234 ----~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~p~~~~~~~ 294 (499)
+.+++.|+.+.+. |+...|..-+.+-+-++..... ..++.++++.+.+.|+++....|..
T Consensus 156 e~l~~~~E~~Y~~L~~~-~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 156 EELAERMEQCYQKLADA-GFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred HHHHHHHHHHHHHHHHh-CCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence 4556667777663 6666555444444444433322 3456666777777776666555543
No 263
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.67 E-value=1.3 Score=34.66 Aligned_cols=77 Identities=12% Similarity=0.163 Sum_probs=55.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcc
Q 010830 119 MVDVLGKNGRFEQMWNAVRVMKEDGV---LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195 (499)
Q Consensus 119 li~~~~~~~~~~~a~~~~~~m~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 195 (499)
-.....+.|++++|.+.|+.+..+-+ -...+.-.|+.+|.+.+++++|...+++.++..-.--...|...+.+++..
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 34455778899999999999888774 344567788889999999999999999887763222234555566665544
No 264
>PRK11906 transcriptional regulator; Provisional
Probab=94.32 E-value=3 Score=39.63 Aligned_cols=79 Identities=11% Similarity=0.012 Sum_probs=48.9
Q ss_pred hHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010830 97 SAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175 (499)
Q Consensus 97 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 175 (499)
.|.++-+.+.+..+-|+.+...+..++.-.++++.|..+|++....++....+|......+.-.|+.++|.+.+++..+
T Consensus 322 ~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 322 KALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 3444444444556666666666666666666666666677666666665556666555556666666666666666443
No 265
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.32 E-value=5.2 Score=38.36 Aligned_cols=58 Identities=17% Similarity=0.126 Sum_probs=33.0
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCC-CChhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 010830 367 IFECLIKNKRVHEVEKFFHEMIKNEWQ-PTPLNCATAITMLLDADEPEIAIEIWNYILE 424 (499)
Q Consensus 367 ll~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 424 (499)
+..++-+.|+.++|.+.+++|.+.... -+......|+.++...+.+.++..++.+..+
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 444455666666666666666653211 1223445566666666666666666666543
No 266
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.02 E-value=2.1 Score=32.75 Aligned_cols=88 Identities=18% Similarity=0.075 Sum_probs=66.8
Q ss_pred hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCC-CCH---HHHHHHHHHHHhcCChhH
Q 010830 90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSL---PTFASIFDSYCGAGKYDE 165 (499)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~---~~~~~li~~~~~~g~~~~ 165 (499)
.-.|+.+.|++.|.....-.+-+...||.-..++.-.|+.++|++=+++..+..- .+. ..|..-...|...|+-+.
T Consensus 54 aE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~ 133 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDA 133 (175)
T ss_pred HhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHH
Confidence 4468888999999887777777888999999999999999999888887776542 222 244444556777888888
Q ss_pred HHHHHHHHHhCC
Q 010830 166 AVMSFDVMSMHG 177 (499)
Q Consensus 166 A~~~~~~m~~~g 177 (499)
|..-|+..-+.|
T Consensus 134 AR~DFe~AA~LG 145 (175)
T KOG4555|consen 134 ARADFEAAAQLG 145 (175)
T ss_pred HHHhHHHHHHhC
Confidence 888888877666
No 267
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.93 E-value=0.7 Score=40.98 Aligned_cols=79 Identities=15% Similarity=0.169 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhh-----CCCCCCHhh
Q 010830 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG-----ENCFPTLKF 291 (499)
Q Consensus 217 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~ 291 (499)
..++..++..+..+|+++.+...++++... .|-+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~---dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~ 229 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIEL---DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPEL 229 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhc---CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHH
Confidence 456677888888899999999999999654 676788899999999999999999999987755 577776665
Q ss_pred HHHHHHH
Q 010830 292 FSNALDI 298 (499)
Q Consensus 292 ~~~li~~ 298 (499)
.......
T Consensus 230 ~~~y~~~ 236 (280)
T COG3629 230 RALYEEI 236 (280)
T ss_pred HHHHHHH
Confidence 5544433
No 268
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.86 E-value=3.8 Score=35.21 Aligned_cols=149 Identities=12% Similarity=0.082 Sum_probs=75.3
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhc---CCCCCCCHhHHHH
Q 010830 255 LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI---GFNLMPNLIMYNA 331 (499)
Q Consensus 255 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~ 331 (499)
..|+-....|...|..+.|-..+++.-+. .+..++++|+++|++...- +.....-...+..
T Consensus 92 dl~eKAs~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk 155 (308)
T KOG1585|consen 92 DLYEKASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGK 155 (308)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 34555555666666666555555443220 1223445555555543321 1000111234444
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHC----CCCCCH-HhHHHHHHHHHhcCCHhHHHHHHHHHHHCC---CCCChhhHHHHH
Q 010830 332 VIGLLCNNDDVDNVFRFFDQMVFH----GAFPDS-LTYNMIFECLIKNKRVHEVEKFFHEMIKNE---WQPTPLNCATAI 403 (499)
Q Consensus 332 li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~p~~~~~~~li 403 (499)
.-..+.+...+++|-..+.+-... .--++. ..|...|-.+....++..|.++++.--+.+ -.-+..+...|+
T Consensus 156 ~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL 235 (308)
T KOG1585|consen 156 CSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLL 235 (308)
T ss_pred hhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHH
Confidence 555666666666655444333211 011121 234555555666778888888888754431 122455677777
Q ss_pred HHHhccCChhHHHHHHH
Q 010830 404 TMLLDADEPEIAIEIWN 420 (499)
Q Consensus 404 ~~~~~~g~~~~a~~~~~ 420 (499)
.+| ..|+.+++.+++.
T Consensus 236 ~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 236 TAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHh-ccCCHHHHHHHHc
Confidence 776 4577777766543
No 269
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.71 E-value=5.1 Score=36.17 Aligned_cols=161 Identities=12% Similarity=-0.004 Sum_probs=115.5
Q ss_pred hcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCH--HHH--HHHHHHHHhcCChhHH
Q 010830 91 SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSL--PTF--ASIFDSYCGAGKYDEA 166 (499)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~--~~li~~~~~~g~~~~A 166 (499)
..|+..+|-..++.+...++.|..+++..=++|.-.|+.+.-...++++...=-++. .+| ....-++...|-+++|
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 356777777888888888999999999999999999999999999988876622222 223 3344456788999999
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010830 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPD----GDSFAILLEGWEKEGNVEEANKTFGE 242 (499)
Q Consensus 167 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~ 242 (499)
++.-++..+.+ +.|...-.++...+-.. +++.++.++..+-.....-. ...|=...-.+...+.++.|+++|+.
T Consensus 195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~-~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 195 EKQADRALQIN-RFDCWASHAKAHVLEMN-GRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHhhccCC-CcchHHHHHHHHHHHhc-chhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 99999888765 56777778888888777 99999999887765422211 11122233445677999999999987
Q ss_pred HhHccCCCCchH
Q 010830 243 MVERFEWNPEHV 254 (499)
Q Consensus 243 ~~~~~~~~p~~~ 254 (499)
-.-+ ..+.+|.
T Consensus 273 ei~k-~l~k~Da 283 (491)
T KOG2610|consen 273 EIWK-RLEKDDA 283 (491)
T ss_pred HHHH-Hhhccch
Confidence 5443 3344344
No 270
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.37 E-value=11 Score=38.71 Aligned_cols=114 Identities=15% Similarity=0.180 Sum_probs=57.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCc
Q 010830 119 MVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198 (499)
Q Consensus 119 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 198 (499)
+|.-|....+...-...++.+.+.|..+...-..|+.+|.+.++.++-.+..+.-. .|.. ..-....+..+.+. +-
T Consensus 403 Vi~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~s-ny 478 (933)
T KOG2114|consen 403 VIKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKS-NY 478 (933)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHh-Ch
Confidence 34444555555555556666666666666666666777777776666555554433 2211 11122233333333 44
Q ss_pred hHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010830 199 TSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243 (499)
Q Consensus 199 ~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 243 (499)
.++|.-+-.+.. .+......++. ..|++++|.+.+..+
T Consensus 479 l~~a~~LA~k~~----~he~vl~ille---~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 479 LDEAELLATKFK----KHEWVLDILLE---DLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHHHhc----cCHHHHHHHHH---HhcCHHHHHHHHhcC
Confidence 444444433322 23444444333 456677777776665
No 271
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.86 E-value=2.3 Score=35.25 Aligned_cols=59 Identities=12% Similarity=0.079 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010830 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV---LSLPTFASIFDSYCGAGKYDEAVMSFDVM 173 (499)
Q Consensus 115 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 173 (499)
.+..+...|.+.|+.+.|++.|.++.+... .-...+-.+|+.....+++..+.....+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 444444555555555555555555444432 11223444444444445544444444443
No 272
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.77 E-value=6.9 Score=35.81 Aligned_cols=130 Identities=8% Similarity=0.002 Sum_probs=62.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHhhCCC-----CCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCC-CCH-hHH--
Q 010830 259 TFLITLIRGKQVDEALKFLRVMKGENC-----FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLM-PNL-IMY-- 329 (499)
Q Consensus 259 ~li~~~~~~~~~~~a~~~~~~m~~~~~-----~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~-~~~-- 329 (499)
++..++...+.++++++.|+...+... .....+|..+-..|....+.++|.-+.....+.-..+. .|. .-|
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 344555555666666666665443211 11234566666666666666666555443332100011 111 111
Q ss_pred ---HHHHHHHHcCCChHHHHHHHHHHHH----CCCCCC-HHhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010830 330 ---NAVIGLLCNNDDVDNVFRFFDQMVF----HGAFPD-SLTYNMIFECLIKNKRVHEVEKFFHEMI 388 (499)
Q Consensus 330 ---~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 388 (499)
-.|.-++-..|+...|.+.-++..+ .|-++. ......+.+.|...|+.+.|+.-|+...
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2233344555666555555554432 332221 1233445556666777777666665543
No 273
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.63 E-value=4.8 Score=32.76 Aligned_cols=32 Identities=13% Similarity=0.339 Sum_probs=16.2
Q ss_pred HHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhH
Q 010830 276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTH 307 (499)
Q Consensus 276 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 307 (499)
+++.+.+.++.|+...+..+++.+.+.|+...
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 33444445555555555555555555555443
No 274
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.39 E-value=8.1 Score=34.87 Aligned_cols=19 Identities=16% Similarity=0.193 Sum_probs=13.5
Q ss_pred HHHhcCCHhHHHHHHHHHH
Q 010830 370 CLIKNKRVHEVEKFFHEMI 388 (499)
Q Consensus 370 ~~~~~g~~~~a~~~~~~~~ 388 (499)
.+.+.+++++|.+.|+-..
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 3556788888888887544
No 275
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.06 E-value=2.4 Score=35.13 Aligned_cols=64 Identities=16% Similarity=0.135 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCc-hHHhHHHHHHHHhcCCCHHHHHHHHHHHhh
Q 010830 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE-HVLAYETFLITLIRGKQVDEALKFLRVMKG 282 (499)
Q Consensus 218 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 282 (499)
..+..+...|++.|+.+.|.+.|.++.+. ...+. -...+-.+|+...-.+++..+...+.+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~-~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDY-CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhh-cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45666777778888888888888877663 33332 123455667777777777777777665543
No 276
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.93 E-value=5.6 Score=31.96 Aligned_cols=54 Identities=19% Similarity=0.139 Sum_probs=28.9
Q ss_pred HhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 010830 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284 (499)
Q Consensus 228 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 284 (499)
.+.++.+++..+++.+. -+.|.....-..-...++..|+|.+|+.+|+++.+..
T Consensus 21 l~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 34556666666666663 2345333333333444556666666666666655443
No 277
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.81 E-value=5.4 Score=31.52 Aligned_cols=50 Identities=14% Similarity=0.052 Sum_probs=31.7
Q ss_pred hCCChHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 010830 125 KNGRFEQMWNAVRVMKEDGV--LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176 (499)
Q Consensus 125 ~~~~~~~a~~~~~~m~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 176 (499)
..++++++..+++.|.-..+ +...+|. ...+...|++++|.++|+++.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhcc
Confidence 36777777777777766554 2333333 33456677777777777777665
No 278
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=91.75 E-value=7.7 Score=33.19 Aligned_cols=59 Identities=20% Similarity=0.182 Sum_probs=25.6
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010830 185 VNSLLSAICRQENQTSRALEFLNRVKK--IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244 (499)
Q Consensus 185 ~~~ll~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 244 (499)
+......+... +.+..+...+..... ........+......+...+++..+.+.+....
T Consensus 62 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (291)
T COG0457 62 LLLLALALLKL-GRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKAL 122 (291)
T ss_pred HHHHHHHHHHc-ccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333333333 444444444444332 222333344444444444445555555555543
No 279
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=91.72 E-value=17 Score=37.16 Aligned_cols=187 Identities=14% Similarity=0.159 Sum_probs=98.1
Q ss_pred HHHHHHHHH-hCCCCcC--HHHHHHHHHHHHccCCchHHHHHHHHHHhccCC-CCH-----HHHHHHHHHHHhcCCHHHH
Q 010830 166 AVMSFDVMS-MHGVEQD--VVAVNSLLSAICRQENQTSRALEFLNRVKKIVD-PDG-----DSFAILLEGWEKEGNVEEA 236 (499)
Q Consensus 166 A~~~~~~m~-~~g~~p~--~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~-~~~-----~~~~~ll~~~~~~g~~~~a 236 (499)
|++.++.+. +..+.|. ..++-.+...+.....+++.|+..+++...... ++. .+-..++..+.+.+... |
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a 118 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-A 118 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-H
Confidence 455555555 3333332 334455566666555788888888876533111 211 12234566666666555 8
Q ss_pred HHHHHHHhHccCCCCc--hHHhHHHH-HHHHhcCCCHHHHHHHHHHHhhCC---CCCCHhhHHHHHHHHHH--cCCHhHH
Q 010830 237 NKTFGEMVERFEWNPE--HVLAYETF-LITLIRGKQVDEALKFLRVMKGEN---CFPTLKFFSNALDILVK--LNDSTHA 308 (499)
Q Consensus 237 ~~~~~~~~~~~~~~p~--~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~li~~~~~--~~~~~~a 308 (499)
.+.+++..+...-.+. -...+..+ +..+...++...|++.++.+.... ..|-..++..++.+... .+..+++
T Consensus 119 ~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~ 198 (608)
T PF10345_consen 119 LKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDV 198 (608)
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhH
Confidence 7777776554222111 12223333 233333478888888887766422 23334444455555443 3555666
Q ss_pred HHHHHHHHhcCC-------CCCCCHhHHHHHHHHHH--cCCChHHHHHHHHHHH
Q 010830 309 VQLWDIMVGIGF-------NLMPNLIMYNAVIGLLC--NNDDVDNVFRFFDQMV 353 (499)
Q Consensus 309 ~~~~~~~~~~~~-------~~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~m~ 353 (499)
.+..+.+..... ...|...+|..+++.++ ..|+++.+...++++.
T Consensus 199 ~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 199 LELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666666543220 02345667777766554 4566556655554443
No 280
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.49 E-value=9.6 Score=33.82 Aligned_cols=42 Identities=7% Similarity=-0.084 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010830 130 EQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172 (499)
Q Consensus 130 ~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 172 (499)
.+|+++|.-+.+.... ..+-+.++..+....+..+|...+..
T Consensus 150 ~KA~ELFayLv~hkgk-~v~~~~~ie~lwpe~D~kka~s~lhT 191 (361)
T COG3947 150 RKALELFAYLVEHKGK-EVTSWEAIEALWPEKDEKKASSLLHT 191 (361)
T ss_pred hHHHHHHHHHHHhcCC-cccHhHHHHHHccccchhhHHHHHHH
Confidence 5677777777665421 12234456666666666666555543
No 281
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.34 E-value=11 Score=34.25 Aligned_cols=25 Identities=12% Similarity=0.320 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHH
Q 010830 343 DNVFRFFDQMVFHGAFPDSLTYNMI 367 (499)
Q Consensus 343 ~~a~~~~~~m~~~g~~p~~~~~~~l 367 (499)
.++.++++.+.+.|+++....|..+
T Consensus 199 ~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 199 ARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHcCCccccccccHH
Confidence 3555666666666666555555544
No 282
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.33 E-value=6.9 Score=31.85 Aligned_cols=121 Identities=17% Similarity=0.253 Sum_probs=58.5
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHC-
Q 010830 347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN- 425 (499)
Q Consensus 347 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~- 425 (499)
+.++.+.+.|+.|+...+..+++.+.+.|++.. +..++..++-+|.......+-.+. +....+.++--+|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHh
Confidence 344445555666666666666666666666443 233334444445444443332222 2223333333333321
Q ss_pred CCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc
Q 010830 426 GILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 482 (499)
Q Consensus 426 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 482 (499)
+ ..+..++..+...|++-+|.++.+..... +......++++..+.++.
T Consensus 89 ~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~ 136 (167)
T PF07035_consen 89 G-----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDD 136 (167)
T ss_pred h-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCH
Confidence 1 13445556666667766666666554221 122234455555555555
No 283
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.28 E-value=0.28 Score=27.65 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=12.6
Q ss_pred HhCCCCCHHHHHHHHHHHHhcCChhHH
Q 010830 140 KEDGVLSLPTFASIFDSYCGAGKYDEA 166 (499)
Q Consensus 140 ~~~~~~~~~~~~~li~~~~~~g~~~~A 166 (499)
.+.++.+..+|+.+...|...|++++|
T Consensus 6 ie~~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 6 IELNPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence 333344444444444444444444444
No 284
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.06 E-value=14 Score=35.59 Aligned_cols=81 Identities=11% Similarity=-0.000 Sum_probs=56.9
Q ss_pred hhHHHHHHHHhccCChhHHHHHHHHHHHCC-CCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCc-cCHHHHHHHHH
Q 010830 397 LNCATAITMLLDADEPEIAIEIWNYILENG-ILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL-IYEVTMHKLKK 474 (499)
Q Consensus 397 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~ 474 (499)
.+-..+..++-+.|+.++|.+.+++|.+.. ..-+..+...|+.++...+.+.++..++.+--+.... .-...|+..+-
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 333456666778899999999999998633 2234457778999999999999999999987543221 22345666554
Q ss_pred HHH
Q 010830 475 AFY 477 (499)
Q Consensus 475 ~~~ 477 (499)
.+-
T Consensus 340 kaR 342 (539)
T PF04184_consen 340 KAR 342 (539)
T ss_pred HHH
Confidence 433
No 285
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=90.99 E-value=4 Score=29.72 Aligned_cols=58 Identities=14% Similarity=0.153 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHH
Q 010830 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223 (499)
Q Consensus 165 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 223 (499)
+..+-++.+....+.|+..+..+.+++|-+. +++..|.++|+.++....+....|..+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRv-ND~a~AVR~lE~iK~K~~~~~~~Y~~~ 85 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRV-NDFALAVRILEGIKDKCGNKKEIYPYI 85 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHT-T-HHHHHHHHHHHHHHTTT-TTHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHccChHHHHHHH
Confidence 4555555666666667777777777776666 777777777766665433333344433
No 286
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.96 E-value=0.59 Score=26.67 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHH
Q 010830 433 SANELLVGLRNLGRLSDVRRFAEEML 458 (499)
Q Consensus 433 ~~~~ll~~~~~~g~~~~a~~~~~~m~ 458 (499)
+|..|...|.+.|++++|++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35677788888888888888888854
No 287
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=90.85 E-value=13 Score=34.15 Aligned_cols=225 Identities=14% Similarity=0.080 Sum_probs=93.7
Q ss_pred CchHHHHHHHHHHhc---cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCch----HHhHHHHHHHHhcCCC
Q 010830 197 NQTSRALEFLNRVKK---IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH----VLAYETFLITLIRGKQ 269 (499)
Q Consensus 197 ~~~~~a~~~~~~~~~---~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~~li~~~~~~~~ 269 (499)
.+.++|+..+.+... .......++..+..+.++.|.+++++..--.-.+- -..-+| ...|..+.+++-+.-+
T Consensus 20 ~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~-a~~~~ds~~~~ea~lnlar~~e~l~~ 98 (518)
T KOG1941|consen 20 NQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDT-ARELEDSDFLLEAYLNLARSNEKLCE 98 (518)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666555432 11223345555666666666666655433222111 000001 1123333333333334
Q ss_pred HHHHHHHHHHHhh-CCCCCC---HhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCC---CCCCHhHHHHHHHHHHcCCCh
Q 010830 270 VDEALKFLRVMKG-ENCFPT---LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFN---LMPNLIMYNAVIGLLCNNDDV 342 (499)
Q Consensus 270 ~~~a~~~~~~m~~-~~~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~~~~ 342 (499)
+.+++.+-..-.. .|..|. .....++-.+....+.++++.+.|+...+-... -.....+|-.|-..|.+..++
T Consensus 99 f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~ 178 (518)
T KOG1941|consen 99 FHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDY 178 (518)
T ss_pred hhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhh
Confidence 4444443332222 122221 112223444455555566666666655432100 011234555666666666666
Q ss_pred HHHHHHHHHHHH----CCCCCCHHhHH-----HHHHHHHhcCCHhHHHHHHHHHHH----CCCCC-ChhhHHHHHHHHhc
Q 010830 343 DNVFRFFDQMVF----HGAFPDSLTYN-----MIFECLIKNKRVHEVEKFFHEMIK----NEWQP-TPLNCATAITMLLD 408 (499)
Q Consensus 343 ~~a~~~~~~m~~----~g~~p~~~~~~-----~ll~~~~~~g~~~~a~~~~~~~~~----~~~~p-~~~~~~~li~~~~~ 408 (499)
++|.-+..+..+ .++.--..-|. .|..++...|+...|.+.-++..+ .|-.+ -......+.+.|-.
T Consensus 179 ~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~ 258 (518)
T KOG1941|consen 179 EKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRS 258 (518)
T ss_pred hHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHh
Confidence 666555444332 12111111122 222344455555555555554433 22111 11122334444555
Q ss_pred cCChhHHHHHHHHH
Q 010830 409 ADEPEIAIEIWNYI 422 (499)
Q Consensus 409 ~g~~~~a~~~~~~m 422 (499)
.|+.|.|+.-|+..
T Consensus 259 ~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 259 RGDLERAFRRYEQA 272 (518)
T ss_pred cccHhHHHHHHHHH
Confidence 56666555555544
No 288
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.77 E-value=7.5 Score=31.26 Aligned_cols=71 Identities=8% Similarity=-0.128 Sum_probs=41.7
Q ss_pred HHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcc
Q 010830 123 LGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195 (499)
Q Consensus 123 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 195 (499)
-.+.++.+.+..+++-+.-..+-....-..-...+...|++.+|..+|+++.+. .|.......|+..|...
T Consensus 20 al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLALCLYA 90 (160)
T ss_pred HHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHH
Confidence 345567777777777776665433333333334456677777777777777654 34444455555555544
No 289
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.67 E-value=0.64 Score=26.52 Aligned_cols=23 Identities=17% Similarity=0.424 Sum_probs=11.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHH
Q 010830 150 FASIFDSYCGAGKYDEAVMSFDV 172 (499)
Q Consensus 150 ~~~li~~~~~~g~~~~A~~~~~~ 172 (499)
|+.|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555555555555555554
No 290
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.30 E-value=8.7 Score=31.24 Aligned_cols=124 Identities=14% Similarity=0.115 Sum_probs=59.1
Q ss_pred HhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHh-hHHHHH--HHHHHcCC
Q 010830 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK-FFSNAL--DILVKLND 304 (499)
Q Consensus 228 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~li--~~~~~~~~ 304 (499)
.+.+..++|+.-|..+.+. |..---+..--.+.......|+...|...|+++-...-.|-.. -..-|= -.+...|.
T Consensus 69 A~~~k~d~Alaaf~~lekt-g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEKT-GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHcCCchHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 3455566666666666553 3322111122222334455566666666666665544333222 111111 12234555
Q ss_pred HhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 010830 305 STHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354 (499)
Q Consensus 305 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 354 (499)
+++.....+-+...+ .+.-...-..|.-+-.+.|++.+|...|..+..
T Consensus 148 y~dV~srvepLa~d~--n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDG--NPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCC--ChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 555555555444433 222233344555555566666666666666554
No 291
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=90.15 E-value=13 Score=33.11 Aligned_cols=118 Identities=9% Similarity=0.083 Sum_probs=73.0
Q ss_pred CChhHHHHHHHHHHh-CCCCcCHHHHHHHHHHHHc-cCCchHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHhcCCHHHH
Q 010830 161 GKYDEAVMSFDVMSM-HGVEQDVVAVNSLLSAICR-QENQTSRALEFLNRVKK--IVDPDGDSFAILLEGWEKEGNVEEA 236 (499)
Q Consensus 161 g~~~~A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~-~~~~~~~a~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~~~a 236 (499)
.-+.+|+++|+.... ..+--|..+...+++.... .+.....-.++.+-+.. +..++..+...++..+++.+++.+-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 345566667664322 2345567777777777665 21222223333333333 3567777777888888888888888
Q ss_pred HHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHH
Q 010830 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279 (499)
Q Consensus 237 ~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~ 279 (499)
.++++......+..- |...|..+|+...+.|+..-..++.++
T Consensus 222 ~~fW~~~~~~~~~~~-D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGN-DPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHhcccCCCCC-CCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 888877755312222 566788888888888887776666543
No 292
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.02 E-value=0.31 Score=27.45 Aligned_cols=32 Identities=16% Similarity=0.200 Sum_probs=27.0
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhCCChHHHH
Q 010830 102 FRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMW 133 (499)
Q Consensus 102 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 133 (499)
|+.+.+..+-|..+|+.+...|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34445567889999999999999999999986
No 293
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.97 E-value=2.9 Score=30.04 Aligned_cols=61 Identities=20% Similarity=0.166 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHH
Q 010830 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333 (499)
Q Consensus 270 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 333 (499)
.=++.+-++.+....+.|+..+..+.+++|.+.+++..|.++++.++.+. ..+...|..++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~---~~~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC---GAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc---cCchhhHHHHH
Confidence 33555566666677777888888888888888888888888888776432 22334555444
No 294
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.74 E-value=1.9 Score=38.45 Aligned_cols=100 Identities=13% Similarity=0.144 Sum_probs=66.9
Q ss_pred CCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCH
Q 010830 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG----VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDV 182 (499)
Q Consensus 107 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 182 (499)
+|.+....+-..++..-....+++.+...+-.++... .++. +-.++++.+.+ -+.++++.++..=++.|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccch
Confidence 4566666666777776666778888887777776554 1221 22233333333 3456788888777888888888
Q ss_pred HHHHHHHHHHHccCCchHHHHHHHHHH
Q 010830 183 VAVNSLLSAICRQENQTSRALEFLNRV 209 (499)
Q Consensus 183 ~~~~~ll~~~~~~~~~~~~a~~~~~~~ 209 (499)
.+++.+|+.+.+. +++.+|..+.-.|
T Consensus 136 f~~c~l~D~flk~-~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 136 FTFCLLMDSFLKK-ENYKDAASVVTEV 161 (418)
T ss_pred hhHHHHHHHHHhc-ccHHHHHHHHHHH
Confidence 8888888888888 7777777665554
No 295
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.73 E-value=12 Score=31.82 Aligned_cols=74 Identities=14% Similarity=-0.009 Sum_probs=46.3
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhc
Q 010830 136 VRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK 211 (499)
Q Consensus 136 ~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 211 (499)
|.+.....+.-+.+||.|.-.+...|+++.|.+.|+...+..-.-+-...|.-|..|. . |++..|.+-+-+.-.
T Consensus 88 ftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY-~-gR~~LAq~d~~~fYQ 161 (297)
T COG4785 88 FSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-G-GRYKLAQDDLLAFYQ 161 (297)
T ss_pred hhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeee-c-CchHhhHHHHHHHHh
Confidence 3344444444566788888888999999999999998876542222233333333332 2 777777776665543
No 296
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.63 E-value=6.1 Score=35.39 Aligned_cols=48 Identities=8% Similarity=0.065 Sum_probs=22.7
Q ss_pred CHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHH
Q 010830 376 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 423 (499)
Q Consensus 376 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 423 (499)
+.++++.++..=+.-|+-||..+++.+++.+.+.+++..|..+.-.|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 334444444444444555555555555555555555544444444333
No 297
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.48 E-value=2.7 Score=30.59 Aligned_cols=47 Identities=23% Similarity=0.224 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 010830 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI 318 (499)
Q Consensus 272 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 318 (499)
+..+-++.+....+.|+..+..+.+++|.+.+++..|.++++.++.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44555566666677777777777777777777777777777777654
No 298
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.44 E-value=8.7 Score=32.92 Aligned_cols=16 Identities=13% Similarity=0.125 Sum_probs=7.9
Q ss_pred CCCHHHHHHHHHHHhh
Q 010830 267 GKQVDEALKFLRVMKG 282 (499)
Q Consensus 267 ~~~~~~a~~~~~~m~~ 282 (499)
.+++.+|+++|++.-.
T Consensus 167 leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 167 LEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555443
No 299
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.22 E-value=11 Score=30.74 Aligned_cols=141 Identities=14% Similarity=0.107 Sum_probs=83.5
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHH-HHH
Q 010830 110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT--FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV-AVN 186 (499)
Q Consensus 110 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~ 186 (499)
..+...|..-++ +++.+..++|+.-|..+.+.|.-+-.. .--........|+...|...|+++-...-.|-.. -..
T Consensus 56 s~sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~A 134 (221)
T COG4649 56 SKSGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLA 134 (221)
T ss_pred ccchHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHH
Confidence 344556666665 567788888888888888887533222 2223344567788888888888886653333322 111
Q ss_pred HHHHH--HHccCCchHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCch
Q 010830 187 SLLSA--ICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH 253 (499)
Q Consensus 187 ~ll~~--~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~ 253 (499)
.|=.+ +... |.++....-.+-+.. +.+.....-..|.-+-.+.|++.+|.+.|..+... ...|.+
T Consensus 135 Rlraa~lLvD~-gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D-a~aprn 202 (221)
T COG4649 135 RLRAAYLLVDN-GSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND-AQAPRN 202 (221)
T ss_pred HHHHHHHHhcc-ccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc-ccCcHH
Confidence 11111 2334 666666666655543 23333444455666667778888888888877663 444533
No 300
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=89.04 E-value=13 Score=31.62 Aligned_cols=169 Identities=16% Similarity=0.100 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHH
Q 010830 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296 (499)
Q Consensus 217 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li 296 (499)
...+......+...+++..+...+...... ...+.....+......+...+.+..+.+.+.........+. .......
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 136 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALEL-ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLA 136 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHH
Confidence 456666667777777777777777766431 12333455666666667777777777777777665443321 1111122
Q ss_pred H-HHHHcCCHhHHHHHHHHHHhcCCCC--CCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 010830 297 D-ILVKLNDSTHAVQLWDIMVGIGFNL--MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 373 (499)
Q Consensus 297 ~-~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 373 (499)
. .+...|+.+.+...+....... - ......+......+...++.+.+...+..............+..+...+..
T Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 137 LGALYELGDYEEALELYEKALELD--PELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--CCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 2 5666777777777777665421 0 012223333333344555666666666665553111023444455555555
Q ss_pred cCCHhHHHHHHHHHHH
Q 010830 374 NKRVHEVEKFFHEMIK 389 (499)
Q Consensus 374 ~g~~~~a~~~~~~~~~ 389 (499)
.++.+.+...+.....
T Consensus 215 ~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 215 LGKYEEALEYYEKALE 230 (291)
T ss_pred cccHHHHHHHHHHHHh
Confidence 5555555555555544
No 301
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.82 E-value=30 Score=35.36 Aligned_cols=102 Identities=14% Similarity=0.097 Sum_probs=60.3
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCC
Q 010830 120 VDVLGKNGRFEQMWNAVRVMKEDGV--LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197 (499)
Q Consensus 120 i~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 197 (499)
|+.+.+.+.+++|++..+.....-. .....+...|..+...|++++|-...-.|. .-+..-|.--+..++.. +
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~----gn~~~eWe~~V~~f~e~-~ 437 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML----GNNAAEWELWVFKFAEL-D 437 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh----cchHHHHHHHHHHhccc-c
Confidence 4556778888888877665544332 134578888888999999999988888886 23344444444444443 3
Q ss_pred chHHHHHHHHHHhccCC-CCHHHHHHHHHHHHh
Q 010830 198 QTSRALEFLNRVKKIVD-PDGDSFAILLEGWEK 229 (499)
Q Consensus 198 ~~~~a~~~~~~~~~~~~-~~~~~~~~ll~~~~~ 229 (499)
+.... +.-+..+.+ .+..+|..++..+..
T Consensus 438 ~l~~I---a~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 438 QLTDI---APYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccchh---hccCCCCCcccCchHHHHHHHHHHH
Confidence 22221 111222211 345667777766665
No 302
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.72 E-value=29 Score=35.03 Aligned_cols=85 Identities=19% Similarity=0.249 Sum_probs=39.1
Q ss_pred HhCCChHHHHHHHHHHHh-------CCCCCHHHHHHHHHHHHhcC-----ChhHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 010830 124 GKNGRFEQMWNAVRVMKE-------DGVLSLPTFASIFDSYCGAG-----KYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191 (499)
Q Consensus 124 ~~~~~~~~a~~~~~~m~~-------~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 191 (499)
+...+++.|+..|+.+.+ .+ ......-+..+|.+.. +.+.|..+|....+.| .|+....-..+..
T Consensus 260 g~~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~ 336 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYE 336 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 344566666666666655 22 2223444444454432 4455666666555554 3333332222222
Q ss_pred HHccCCchHHHHHHHHHHhc
Q 010830 192 ICRQENQTSRALEFLNRVKK 211 (499)
Q Consensus 192 ~~~~~~~~~~a~~~~~~~~~ 211 (499)
......+...|.++|...-+
T Consensus 337 ~g~~~~d~~~A~~yy~~Aa~ 356 (552)
T KOG1550|consen 337 TGTKERDYRRAFEYYSLAAK 356 (552)
T ss_pred cCCccccHHHHHHHHHHHHH
Confidence 11101344555555555443
No 303
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=88.39 E-value=23 Score=35.82 Aligned_cols=25 Identities=32% Similarity=0.563 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHH
Q 010830 113 PYAWNLMVDVLGKNGRFEQMWNAVRV 138 (499)
Q Consensus 113 ~~~~~~li~~~~~~~~~~~a~~~~~~ 138 (499)
+.-|+ .+..+.-.|.++.|.+++..
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-T
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHh
Confidence 56776 67778888999999988843
No 304
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.35 E-value=5 Score=39.27 Aligned_cols=149 Identities=9% Similarity=-0.006 Sum_probs=84.8
Q ss_pred hcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHH
Q 010830 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHA 308 (499)
Q Consensus 229 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 308 (499)
-.|+++.|..++..+.+ ..-+.++..+-+.|-.++|+++- +|... -.....+.|+++.|
T Consensus 598 mrrd~~~a~~vLp~I~k---------~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA 656 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPK---------EIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIA 656 (794)
T ss_pred hhccccccccccccCch---------hhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHH
Confidence 34666666555544432 13445566666666666665432 22111 12233466777777
Q ss_pred HHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010830 309 VQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388 (499)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 388 (499)
.++..+.. +..-|..|.++....+++..|.+.|..... |..|+-.+...|+-+....+-....
T Consensus 657 ~~la~e~~--------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~ 719 (794)
T KOG0276|consen 657 FDLAVEAN--------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAK 719 (794)
T ss_pred HHHHHhhc--------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHH
Confidence 66655432 456677777777777888777777766554 4556666666676655555555555
Q ss_pred HCCCCCChhhHHHHHHHHhccCChhHHHHHHHH
Q 010830 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 421 (499)
Q Consensus 389 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 421 (499)
+.|. - |.-.-+|...|+++++.+++.+
T Consensus 720 ~~g~-~-----N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 720 KQGK-N-----NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred hhcc-c-----chHHHHHHHcCCHHHHHHHHHh
Confidence 5552 1 2223345556777777776553
No 305
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.20 E-value=11 Score=29.76 Aligned_cols=53 Identities=17% Similarity=0.092 Sum_probs=32.2
Q ss_pred hcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 010830 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284 (499)
Q Consensus 229 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 284 (499)
..++.+++..+++.|. -+.|.....-..-...+...|+|++|+.+|+++.+.+
T Consensus 22 ~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 3667777777777773 3355443333333445566777777777777776654
No 306
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=87.97 E-value=19 Score=32.12 Aligned_cols=137 Identities=9% Similarity=0.152 Sum_probs=88.3
Q ss_pred ChHHHHHHHHHHHH-CCCCCCHHhHHHHHHHHHhc-C-CHhHHHHHHHHHHHC-CCCCChhhHHHHHHHHhccCChhHHH
Q 010830 341 DVDNVFRFFDQMVF-HGAFPDSLTYNMIFECLIKN-K-RVHEVEKFFHEMIKN-EWQPTPLNCATAITMLLDADEPEIAI 416 (499)
Q Consensus 341 ~~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~-g-~~~~a~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~a~ 416 (499)
.+.+|+++|+.... ..+--|..+...+++..... + ....-.++.+-+... +-.++..+...++..+++.+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 35566777763222 22445667777777776652 2 233333444444433 45677778888899999999999999
Q ss_pred HHHHHHHHC-CCCChHHHHHHHHHHHHhCCChHHHHHHHHH-----HHHcCCccCHHHHHHHHHHHH
Q 010830 417 EIWNYILEN-GILPLEASANELLVGLRNLGRLSDVRRFAEE-----MLNRRILIYEVTMHKLKKAFY 477 (499)
Q Consensus 417 ~~~~~m~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~-----m~~~~~~p~~~~~~~ll~~~~ 477 (499)
++|+..... +..-|...|..+|+.....|+..-..++..+ +++.|+..+...-..+-+.|.
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence 998877754 5667888899999999999987766666553 124456666555555544443
No 307
>PRK09687 putative lyase; Provisional
Probab=87.59 E-value=21 Score=32.20 Aligned_cols=235 Identities=12% Similarity=0.050 Sum_probs=133.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCH----HHHHHHHHHHhhCCCCCCHh
Q 010830 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV----DEALKFLRVMKGENCFPTLK 290 (499)
Q Consensus 215 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~----~~a~~~~~~m~~~~~~p~~~ 290 (499)
+|..+....+..+...|..+ +...+..+... + |...-...+.++.+.|+. +++...+..+.... ++..
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~~----~-d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D--~d~~ 106 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQD-VFRLAIELCSS----K-NPIERDIGADILSQLGMAKRCQDNVFNILNNLALED--KSAC 106 (280)
T ss_pred CCHHHHHHHHHHHHhcCcch-HHHHHHHHHhC----C-CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcC--CCHH
Confidence 45555555566666665433 22223333221 1 444555556666666652 45666666653332 4555
Q ss_pred hHHHHHHHHHHcCCH-----hHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHH
Q 010830 291 FFSNALDILVKLNDS-----THAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYN 365 (499)
Q Consensus 291 ~~~~li~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 365 (499)
+-...+.++...+.. ..+...+..... .++..+-...+.++.+.++ +.+...+-.+.+. +|...-.
T Consensus 107 VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~-----D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~ 177 (280)
T PRK09687 107 VRASAINATGHRCKKNPLYSPKIVEQSQITAF-----DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRN 177 (280)
T ss_pred HHHHHHHHHhcccccccccchHHHHHHHHHhh-----CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHH
Confidence 555555555554321 222333333322 3466666677777877776 4566666666653 4555555
Q ss_pred HHHHHHHhcC-CHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhC
Q 010830 366 MIFECLIKNK-RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 444 (499)
Q Consensus 366 ~ll~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 444 (499)
..+.++.+.+ ....+...+..+.. .++..+-...+.++.+.|+. .+...+-...+.+. .....+.++...
T Consensus 178 ~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~-----~~~~a~~ALg~i 248 (280)
T PRK09687 178 WAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT-----VGDLIIEAAGEL 248 (280)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc-----hHHHHHHHHHhc
Confidence 5555665543 23456666666664 34667777788888888874 45555555555432 234577888888
Q ss_pred CChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHh
Q 010830 445 GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 478 (499)
Q Consensus 445 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 478 (499)
|+. +|...+.++.+. .||..+-...+.+|.+
T Consensus 249 g~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 249 GDK-TLLPVLDTLLYK--FDDNEIITKAIDKLKR 279 (280)
T ss_pred CCH-hHHHHHHHHHhh--CCChhHHHHHHHHHhc
Confidence 885 688888888864 3577777776666643
No 308
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.37 E-value=10 Score=27.36 Aligned_cols=46 Identities=17% Similarity=0.166 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhc
Q 010830 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK 211 (499)
Q Consensus 165 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 211 (499)
++.+-++.+....+.|+.....+.+++|-+. +++..|.++|+.++.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRv-ND~alAVR~lE~vK~ 70 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRV-NDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHh-hhHHHHHHHHHHHHH
Confidence 4444445555555555555555566665555 556666665555543
No 309
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=85.98 E-value=30 Score=32.34 Aligned_cols=67 Identities=7% Similarity=-0.005 Sum_probs=49.0
Q ss_pred CCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC---CHHhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010830 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFP---DSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 390 (499)
Q Consensus 324 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 390 (499)
....+|..+...+.+.|.++.|...+..+...+... +....-.-.+..-..|+..+|...++..++.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 356678888899999999999999999888743221 2333344455566788889999998888873
No 310
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.74 E-value=21 Score=35.27 Aligned_cols=132 Identities=8% Similarity=0.054 Sum_probs=93.4
Q ss_pred hHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 010830 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC 370 (499)
Q Consensus 291 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 370 (499)
.-+.+...+.+.|-.++|+++ .+|..-- .....+.|+++.|.++..+.. +..-|..|.++
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~-----------s~D~d~r---Felal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~ 675 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALEL-----------STDPDQR---FELALKLGRLDIAFDLAVEAN------SEVKWRQLGDA 675 (794)
T ss_pred hhhhHHhHhhhccchHhhhhc-----------CCChhhh---hhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHH
Confidence 445566777777777777654 2232211 223456788998888776653 66789999999
Q ss_pred HHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHH
Q 010830 371 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 450 (499)
Q Consensus 371 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 450 (499)
..+.|++..|.+.|.+..+ |..|+-.+...|+-+....+-....+.|. .|.-..+|...|+++++
T Consensus 676 al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C 740 (794)
T KOG0276|consen 676 ALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEEC 740 (794)
T ss_pred HhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHH
Confidence 9999999999999987654 45677777788888877777676666663 24445567788999999
Q ss_pred HHHHHHH
Q 010830 451 RRFAEEM 457 (499)
Q Consensus 451 ~~~~~~m 457 (499)
.+++.+-
T Consensus 741 ~~lLi~t 747 (794)
T KOG0276|consen 741 LELLIST 747 (794)
T ss_pred HHHHHhc
Confidence 8887654
No 311
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=85.71 E-value=49 Score=34.54 Aligned_cols=224 Identities=12% Similarity=0.080 Sum_probs=109.9
Q ss_pred CchHHHHHHHHHHhccCCC-----CHH---HHHHHH-HHHHhcCCHHHHHHHHHHHhHcc---CCCCchHHhHHHHHHHH
Q 010830 197 NQTSRALEFLNRVKKIVDP-----DGD---SFAILL-EGWEKEGNVEEANKTFGEMVERF---EWNPEHVLAYETFLITL 264 (499)
Q Consensus 197 ~~~~~a~~~~~~~~~~~~~-----~~~---~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~~li~~~ 264 (499)
.++++|..+.+++....++ ... .++.+- ......|++++|.++.+...... ...+ .+..+..+..+.
T Consensus 429 ~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~-r~~~~sv~~~a~ 507 (894)
T COG2909 429 HRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRS-RIVALSVLGEAA 507 (894)
T ss_pred cChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchh-hhhhhhhhhHHH
Confidence 7788888888877552222 111 222221 12234678888887777765531 1112 344566677777
Q ss_pred hcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHH-----HHHHHcCCHhHHH--HHHHHHHhcCCC-C---CCCHhHHHHHH
Q 010830 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNAL-----DILVKLNDSTHAV--QLWDIMVGIGFN-L---MPNLIMYNAVI 333 (499)
Q Consensus 265 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li-----~~~~~~~~~~~a~--~~~~~~~~~~~~-~---~~~~~~~~~li 333 (499)
.-.|++++|..+..+..+..-.-+...|.... ..+...|+...+. ..|......... . .+-..++..+.
T Consensus 508 ~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll 587 (894)
T COG2909 508 HIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLL 587 (894)
T ss_pred HHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHH
Confidence 77788888888887665543233333333222 2344556433332 233333222100 0 11233445555
Q ss_pred HHHHcCC-ChHHHHHHHHHHHHCCCCCCHHhH--HHHHHHHHhcCCHhHHHHHHHHHHHCCCCC----ChhhHHHHH--H
Q 010830 334 GLLCNND-DVDNVFRFFDQMVFHGAFPDSLTY--NMIFECLIKNKRVHEVEKFFHEMIKNEWQP----TPLNCATAI--T 404 (499)
Q Consensus 334 ~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~--~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p----~~~~~~~li--~ 404 (499)
.++.+.. ...++..-++-.......|-...+ ..|+......|+.++|...++++......+ +..+-...+ .
T Consensus 588 ~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~ 667 (894)
T COG2909 588 RAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLI 667 (894)
T ss_pred HHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHH
Confidence 5555421 111222222222222222222222 256677778899999988888877642222 222212222 2
Q ss_pred HHhccCChhHHHHHHHH
Q 010830 405 MLLDADEPEIAIEIWNY 421 (499)
Q Consensus 405 ~~~~~g~~~~a~~~~~~ 421 (499)
.....|+.+.+.....+
T Consensus 668 lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 668 LWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhcccCCHHHHHHHHHh
Confidence 23355777777666554
No 312
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.40 E-value=2.2 Score=24.91 Aligned_cols=27 Identities=19% Similarity=0.455 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010830 148 PTFASIFDSYCGAGKYDEAVMSFDVMS 174 (499)
Q Consensus 148 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 174 (499)
.+++.|...|...|++++|.+++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 456667777777777777777776654
No 313
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=85.17 E-value=2.2 Score=23.61 Aligned_cols=17 Identities=6% Similarity=0.233 Sum_probs=5.9
Q ss_pred HHHhcCCHhHHHHHHHH
Q 010830 370 CLIKNKRVHEVEKFFHE 386 (499)
Q Consensus 370 ~~~~~g~~~~a~~~~~~ 386 (499)
+|...|++++|+..|++
T Consensus 10 ~~~~~~~~~~A~~~~~~ 26 (34)
T PF00515_consen 10 AYFQLGDYEEALEYYQR 26 (34)
T ss_dssp HHHHTT-HHHHHHHHHH
T ss_pred HHHHhCCchHHHHHHHH
Confidence 33333333333333333
No 314
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=85.02 E-value=2.8 Score=25.25 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=15.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcC
Q 010830 437 LLVGLRNLGRLSDVRRFAEEMLNRR 461 (499)
Q Consensus 437 ll~~~~~~g~~~~a~~~~~~m~~~~ 461 (499)
|..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4556666666666666666666543
No 315
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.91 E-value=9.5 Score=31.98 Aligned_cols=71 Identities=15% Similarity=0.113 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhc----cCCCCHHHHHHHHHHHHhcCCHHHH
Q 010830 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK----IVDPDGDSFAILLEGWEKEGNVEEA 236 (499)
Q Consensus 164 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~ll~~~~~~g~~~~a 236 (499)
+.|.+.|-.+...+.--++...-.|..-|. . .+.+++..++....+ +..+|...+..|+..|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-k-rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-K-RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-c-cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 445555555555543333333333333333 2 455555555544422 2244555555555555555555554
No 316
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=84.91 E-value=2.6 Score=23.35 Aligned_cols=27 Identities=19% Similarity=0.381 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010830 149 TFASIFDSYCGAGKYDEAVMSFDVMSM 175 (499)
Q Consensus 149 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 175 (499)
+|..+...|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555666666666666666665544
No 317
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.66 E-value=48 Score=33.49 Aligned_cols=181 Identities=12% Similarity=0.105 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHHhCCCCCHHHHHHHHHH---HHhcCChhHHHHHHHHHHh-------CCCCcCHHHHHHHHHHHHccC--
Q 010830 129 FEQMWNAVRVMKEDGVLSLPTFASIFDS---YCGAGKYDEAVMSFDVMSM-------HGVEQDVVAVNSLLSAICRQE-- 196 (499)
Q Consensus 129 ~~~a~~~~~~m~~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~ll~~~~~~~-- 196 (499)
...|.+.++...+.|.........++.. +....+.+.|..+|+...+ .| +.....-+-.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 4578888888888774333333333322 4456688888888888865 33 2223444444444420
Q ss_pred -C-chHHHHHHHHHHhccCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhc----CCC
Q 010830 197 -N-QTSRALEFLNRVKKIVDPDGDSFAILLEGWEK-EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR----GKQ 269 (499)
Q Consensus 197 -~-~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~----~~~ 269 (499)
. +.+.|..++.+......|+....-..+..... ..+...|.+.|...... |..+ .+-.+..+|.. ..+
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~-G~~~----A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA-GHIL----AIYRLALCYELGLGVERN 379 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc-CChH----HHHHHHHHHHhCCCcCCC
Confidence 2 45556666666555434444433333332222 23456666666666553 4322 22222222222 245
Q ss_pred HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcC
Q 010830 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG 319 (499)
Q Consensus 270 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 319 (499)
...|..++.+.-+.| .|...--...+..+.. ++.+.+.-.+..+.+.|
T Consensus 380 ~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 666666666666655 2221111222233333 55555555555555444
No 318
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=84.53 E-value=2.7 Score=23.14 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010830 149 TFASIFDSYCGAGKYDEAVMSFDVMSM 175 (499)
Q Consensus 149 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 175 (499)
.|..+...+...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345555666666666666666665544
No 319
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.37 E-value=8.7 Score=32.56 Aligned_cols=79 Identities=10% Similarity=0.070 Sum_probs=50.0
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHH
Q 010830 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGL 335 (499)
Q Consensus 256 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 335 (499)
|.+.-++.+.+.+..++++...++-.+.+ +.|..+-..+++.+|-.|++++|..-++..-+......+...+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 44556677777788888888777655554 23445555677888888888888777666555332233445566666543
No 320
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.31 E-value=2.7 Score=24.54 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010830 218 DSFAILLEGWEKEGNVEEANKTFGEMV 244 (499)
Q Consensus 218 ~~~~~ll~~~~~~g~~~~a~~~~~~~~ 244 (499)
.+++.+...|...|++++|.+++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 345556666666666666666665553
No 321
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.52 E-value=17 Score=30.54 Aligned_cols=20 Identities=15% Similarity=0.225 Sum_probs=8.0
Q ss_pred CHhhHHHHHHHHHHcCCHhH
Q 010830 288 TLKFFSNALDILVKLNDSTH 307 (499)
Q Consensus 288 ~~~~~~~li~~~~~~~~~~~ 307 (499)
|...+.+|.+.+.+.|+.+.
T Consensus 177 n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred CHHHHHHHHHHHHHhcchhh
Confidence 33344444444444443333
No 322
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=81.95 E-value=0.61 Score=37.13 Aligned_cols=53 Identities=11% Similarity=0.212 Sum_probs=24.2
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHH
Q 010830 296 LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350 (499)
Q Consensus 296 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 350 (499)
+..+.+.+..+....+++.+...+ ...+....+.++..|++.+..++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKEN--KENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTS--TC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcc--cccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 333444444444444455444433 23345555555555555554455544444
No 323
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=81.92 E-value=0.68 Score=36.83 Aligned_cols=128 Identities=13% Similarity=0.159 Sum_probs=76.1
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCC
Q 010830 332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411 (499)
Q Consensus 332 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 411 (499)
+|..+.+.+..+....+++.+...+..-+....+.++..|++.++.++..++++. .+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 5666777788888888888888766566778888888888888777777777661 111233456666677777
Q ss_pred hhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhccc
Q 010830 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481 (499)
Q Consensus 412 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 481 (499)
++++..++.++....- .+..+...++++.|.+++.+. .+...|..+++.|...++
T Consensus 86 ~~~a~~Ly~~~~~~~~---------al~i~~~~~~~~~a~e~~~~~------~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 86 YEEAVYLYSKLGNHDE---------ALEILHKLKDYEEAIEYAKKV------DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHHHHCCTTHTT---------CSSTSSSTHCSCCCTTTGGGC------SSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHHHHcccHHH---------HHHHHHHHccHHHHHHHHHhc------CcHHHHHHHHHHHHhcCc
Confidence 7766666654432111 111123334455554333221 356777777777766554
No 324
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=81.67 E-value=15 Score=30.17 Aligned_cols=65 Identities=15% Similarity=0.178 Sum_probs=29.3
Q ss_pred cCCCCchHHhHHHHHHHHhcCC----C-------HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHH
Q 010830 247 FEWNPEHVLAYETFLITLIRGK----Q-------VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315 (499)
Q Consensus 247 ~~~~p~~~~~~~~li~~~~~~~----~-------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 315 (499)
..+.|+...++..+..+|...+ + +++|.+.|++..+. .|+..+|+.-+.... +|-+++.++
T Consensus 62 L~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~ 133 (186)
T PF06552_consen 62 LKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEI 133 (186)
T ss_dssp HHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHH
T ss_pred HhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHH
Confidence 3456665566666666554442 2 33333333333332 356666665555442 244455555
Q ss_pred HhcC
Q 010830 316 VGIG 319 (499)
Q Consensus 316 ~~~~ 319 (499)
.+.+
T Consensus 134 ~~~~ 137 (186)
T PF06552_consen 134 HKQG 137 (186)
T ss_dssp HHSS
T ss_pred HHHH
Confidence 4443
No 325
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=81.63 E-value=11 Score=33.58 Aligned_cols=61 Identities=15% Similarity=0.189 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhc
Q 010830 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK 211 (499)
Q Consensus 149 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 211 (499)
+++.....|..+|.+.+|.++.+...... +.+...+-.++..++.. |+--.+.+.++.+.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~-gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATL-GDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHh-ccchhhhhHHHHHHH
Confidence 46667778888888888888888877654 55677777888888888 777777777776643
No 326
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=81.36 E-value=4.7 Score=22.10 Aligned_cols=30 Identities=17% Similarity=0.188 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 010830 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDG 143 (499)
Q Consensus 114 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 143 (499)
..|..+...+.+.|++++|++.|++..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 467788899999999999999999887654
No 327
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=80.74 E-value=26 Score=27.73 Aligned_cols=82 Identities=16% Similarity=0.183 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhCC------CCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCcCHHHHH
Q 010830 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDG------VLSLPTFASIFDSYCGAGK-YDEAVMSFDVMSMHGVEQDVVAVN 186 (499)
Q Consensus 114 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~ 186 (499)
...|.++.-....+++...+.+++.+..-. ..+...|..++.+..+... --.+..+|+-|++.+.+.+...|.
T Consensus 40 ~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 40 IFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 345777777777788888877777774433 2455678888888866665 556677788887777788888888
Q ss_pred HHHHHHHcc
Q 010830 187 SLLSAICRQ 195 (499)
Q Consensus 187 ~ll~~~~~~ 195 (499)
.+|.++.+.
T Consensus 120 ~li~~~l~g 128 (145)
T PF13762_consen 120 CLIKAALRG 128 (145)
T ss_pred HHHHHHHcC
Confidence 888887764
No 328
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=80.63 E-value=14 Score=31.39 Aligned_cols=57 Identities=12% Similarity=0.179 Sum_probs=33.4
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010830 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173 (499)
Q Consensus 117 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 173 (499)
+..++.+.+.+++.+|+...++-.+..+-+...-..+++.++-.|++++|..-++..
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 334455556666666666665555555555555566666666666666666555544
No 329
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.53 E-value=82 Score=33.41 Aligned_cols=116 Identities=10% Similarity=0.200 Sum_probs=60.0
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHhhCCC---CCCHhhHHHHHHHHHHcCCH--hHHHHHHHHHHhcCCCCCCCHhHHH
Q 010830 256 AYETFLITLIRGKQVDEALKFLRVMKGENC---FPTLKFFSNALDILVKLNDS--THAVQLWDIMVGIGFNLMPNLIMYN 330 (499)
Q Consensus 256 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~p~~~~~~~li~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~ 330 (499)
-|..|+..|...|..++|+++|.+..+..- .--..-+.-+++-+.+.+.. +...+.-+...+.. -.-....+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~--p~~gi~Ift 583 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKN--PEAGIQIFT 583 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccC--chhheeeee
Confidence 478888889999999999999888776321 00111222244444444433 33333333333221 000000000
Q ss_pred ------------HHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 010830 331 ------------AVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 373 (499)
Q Consensus 331 ------------~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 373 (499)
.-+-.|......+-+..+++.+....-.++....+.++.-|+.
T Consensus 584 ~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 584 SEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1122345555666677777777665444555666666665543
No 330
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=80.30 E-value=42 Score=29.86 Aligned_cols=35 Identities=20% Similarity=0.173 Sum_probs=22.6
Q ss_pred HHHHHHHHhCCChHHHHHHHHH----HHHcCCccCHHHH
Q 010830 435 NELLVGLRNLGRLSDVRRFAEE----MLNRRILIYEVTM 469 (499)
Q Consensus 435 ~~ll~~~~~~g~~~~a~~~~~~----m~~~~~~p~~~~~ 469 (499)
.-++..+.+.|.+.+|..+... +++.+-+|+..+.
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~v 167 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITV 167 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeeh
Confidence 4467788899999998876554 4444445554433
No 331
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=79.99 E-value=8.1 Score=35.04 Aligned_cols=54 Identities=9% Similarity=0.017 Sum_probs=33.9
Q ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010830 121 DVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174 (499)
Q Consensus 121 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 174 (499)
..|.+.|.+++|++.|.......+-+.+++..-..+|.+..++..|+.-.+..+
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 346666667777776666666555566666666666666666666655554443
No 332
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=79.69 E-value=63 Score=31.49 Aligned_cols=60 Identities=10% Similarity=0.072 Sum_probs=27.7
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 010830 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI 318 (499)
Q Consensus 256 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 318 (499)
..-+++..+..+..++-+..+..+|...| -+...|..++.+|... ..++-..+|+++.+.
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~ 127 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEY 127 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHh
Confidence 44444444555444555555555544443 2334444444444444 334444444444443
No 333
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=79.63 E-value=61 Score=31.24 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=19.8
Q ss_pred CChHHHHHHHHHHHHcCCccCHH----HHHHHHHHHHhcc
Q 010830 445 GRLSDVRRFAEEMLNRRILIYEV----TMHKLKKAFYNES 480 (499)
Q Consensus 445 g~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~g 480 (499)
|+.++|..++-.++ .+.||.. -|..+++.|-...
T Consensus 712 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 749 (831)
T PRK15180 712 GRLDEALSVLISLK--RIEPDVSRLMREYKQIIRLFNESR 749 (831)
T ss_pred ccHHHHHHHHHhhh--ccCccHHHHHHHHHHHHHHhhhhc
Confidence 67777777765554 4566653 3555555554443
No 334
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.26 E-value=5 Score=24.16 Aligned_cols=24 Identities=13% Similarity=0.180 Sum_probs=15.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 010830 153 IFDSYCGAGKYDEAVMSFDVMSMH 176 (499)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~m~~~ 176 (499)
|..+|...|+.+.|.++++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 556667777777777777766643
No 335
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=78.95 E-value=4.4 Score=21.99 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=16.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhHc
Q 010830 222 ILLEGWEKEGNVEEANKTFGEMVER 246 (499)
Q Consensus 222 ~ll~~~~~~g~~~~a~~~~~~~~~~ 246 (499)
.+..++.+.|++++|.+.|+++.++
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455566667777777777776654
No 336
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=78.76 E-value=34 Score=28.27 Aligned_cols=41 Identities=5% Similarity=-0.021 Sum_probs=22.3
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc
Q 010830 439 VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 482 (499)
Q Consensus 439 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 482 (499)
..|.+.|.+++|.+++++..+ .|+......-+....+..+.
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd~ 159 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKDP 159 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHcccc
Confidence 346666666666666666654 23444445445555554443
No 337
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=78.66 E-value=65 Score=31.05 Aligned_cols=112 Identities=9% Similarity=-0.008 Sum_probs=82.2
Q ss_pred hhHHHHHHhcCCCCCHHHHHHHHHhhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCC
Q 010830 66 DDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL 145 (499)
Q Consensus 66 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 145 (499)
+++...|...+-.|+...+..++..-.|+++.+.....-+.........+...+++..-+.|+++.|..+-+.|....+.
T Consensus 310 ~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie 389 (831)
T PRK15180 310 QQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE 389 (831)
T ss_pred HHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC
Confidence 34666777777777777777777766788888888777665555556667778888888888888888888888877776
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 010830 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177 (499)
Q Consensus 146 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 177 (499)
+...........-..|-++++...|+.+...+
T Consensus 390 ~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 390 DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 66666655555566677888888888876543
No 338
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=78.63 E-value=3 Score=22.72 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=11.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 010830 153 IFDSYCGAGKYDEAVMSFDVMSM 175 (499)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~m~~ 175 (499)
+..++.+.|++++|.+.|+++.+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 34444455555555555555543
No 339
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=78.52 E-value=84 Score=32.25 Aligned_cols=61 Identities=8% Similarity=0.215 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC-------hhHHHHHHHHHHhC
Q 010830 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK-------YDEAVMSFDVMSMH 176 (499)
Q Consensus 115 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~ 176 (499)
.| .+|--|.|+|++++|.++..+....-......|...+..|....+ -+....-|+...+.
T Consensus 114 ~W-a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 114 IW-ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp HH-HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred cH-HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 44 456678899999999998866555544445567777777766532 23445555555544
No 340
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=77.92 E-value=19 Score=27.56 Aligned_cols=45 Identities=13% Similarity=0.218 Sum_probs=26.6
Q ss_pred HHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 010830 415 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459 (499)
Q Consensus 415 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 459 (499)
..+.++.+...++.|++.+...-++++.+.+|+..|.++|+-.+.
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 334444444555666666666666666666666666666665543
No 341
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=77.42 E-value=1.6e+02 Score=34.89 Aligned_cols=116 Identities=13% Similarity=0.153 Sum_probs=57.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHH----HhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 010830 152 SIFDSYCGAGKYDEAVMSFDVM----SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW 227 (499)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~ 227 (499)
++..+-.+++.+.+|...++.- .+. .....-|-.+...|+.. +++|....+...... .|+ ....+...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i-~dpDgV~Gv~~~r~a--~~s---l~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSI-HDPDGVEGVSARRFA--DPS---LYQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhc-CCcchhhhHHHHhhc--Ccc---HHHHHHHH
Confidence 4444555666666666666652 111 11122233333355555 666655555542111 111 11223334
Q ss_pred HhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHH
Q 010830 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278 (499)
Q Consensus 228 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~ 278 (499)
...|++..|..-|+.+. +..|+...+++-++......|.++.++...+
T Consensus 1460 e~~g~~~da~~Cye~~~---q~~p~~~~~~~g~l~sml~~~~l~t~i~~~d 1507 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLI---QKDPDKEKHHSGVLKSMLAIQHLSTEILHLD 1507 (2382)
T ss_pred HhhccHHHHHHHHHHhh---cCCCccccchhhHHHhhhcccchhHHHhhhc
Confidence 45666666666666663 3355445556666666666666665555333
No 342
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=77.17 E-value=62 Score=29.98 Aligned_cols=119 Identities=21% Similarity=0.243 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcC---CCHHHHHH
Q 010830 199 TSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG---KQVDEALK 275 (499)
Q Consensus 199 ~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~---~~~~~a~~ 275 (499)
.+.-+.++++..+..+.+......+|..+.+..+.++..+.++++... .|.+...|...+...... -.++....
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~---~~~~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK---NPGSPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---CCCChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 344555566654445566777777788888888888888888888665 555666677666655442 34555555
Q ss_pred HHHHHhh------CCC------CCC-----HhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCC
Q 010830 276 FLRVMKG------ENC------FPT-----LKFFSNALDILVKLNDSTHAVQLWDIMVGIGF 320 (499)
Q Consensus 276 ~~~~m~~------~~~------~p~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 320 (499)
+|.+..+ .+. .++ ...|.-+...+..+|-.+.|..+++.+.+.++
T Consensus 124 ~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 5544322 111 000 12233334445577888888888888877663
No 343
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=76.77 E-value=65 Score=30.05 Aligned_cols=69 Identities=6% Similarity=0.020 Sum_probs=51.6
Q ss_pred CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCC-CHhHHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 010830 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP-NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355 (499)
Q Consensus 287 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 355 (499)
....++..+.+.+.+.|.++.|...+..+.+.+..... +....-.-.+..-..|+.++|+..++...+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34567888899999999999999999998875411111 3444555567777889999999999888873
No 344
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=76.71 E-value=16 Score=27.81 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=23.5
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhc
Q 010830 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK 211 (499)
Q Consensus 167 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 211 (499)
.+.++.+....+.|+.......+++|-+. +|+..|..+|+-++.
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRv-NDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRV-NDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHh-ccHHHHHHHHHHHHH
Confidence 33444444445555555555555555555 555555555555554
No 345
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.68 E-value=53 Score=28.98 Aligned_cols=268 Identities=14% Similarity=0.133 Sum_probs=139.0
Q ss_pred CCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhc--cC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHc----cC
Q 010830 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK--IV--DPDGDSFAILLEGWEKEGNVEEANKTFGEMVER----FE 248 (499)
Q Consensus 177 g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~--~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~ 248 (499)
+-.||+..-|..-..-.-.....++|+.-|+++.+ |- ...-.....++..+.+.|++++....|.++..- ..
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 44566555444333222222567777777777644 21 122334455778888888888888877776431 00
Q ss_pred CCCchHHhHHHHHHHHhcCCCHHHHHHHHHH-------HhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCC
Q 010830 249 WNPEHVLAYETFLITLIRGKQVDEALKFLRV-------MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFN 321 (499)
Q Consensus 249 ~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~-------m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 321 (499)
-+- +..+.|.++.......+.+-..++|+. .+...+ --.|-+-+...|...+.+....++++++.+..-.
T Consensus 101 rNy-SEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRL--WFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ 177 (440)
T KOG1464|consen 101 RNY-SEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERL--WFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQT 177 (440)
T ss_pred ccc-cHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhccee--eeeccchHhhhheeHHHHHHHHHHHHHHHHHhcc
Confidence 011 223456666655555555544444432 221111 1123344666677777777777777777654200
Q ss_pred --CC-------CCHhHHHHHHHHHHcCCChHHHHHHHHHHHH-CCCCCCHHhHHHHHHHH-----HhcCCHhHHHHHHHH
Q 010830 322 --LM-------PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF-HGAFPDSLTYNMIFECL-----IKNKRVHEVEKFFHE 386 (499)
Q Consensus 322 --~~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~-----~~~g~~~~a~~~~~~ 386 (499)
-. .=...|..=|+.|....+-.+-..+|++... ...-|.+..... |+-| .+.|++++|..-|=+
T Consensus 178 edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGv-IRECGGKMHlreg~fe~AhTDFFE 256 (440)
T KOG1464|consen 178 EDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGV-IRECGGKMHLREGEFEKAHTDFFE 256 (440)
T ss_pred ccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhH-HHHcCCccccccchHHHHHhHHHH
Confidence 00 1145677778888888888888888887654 223455544433 3333 456788877654333
Q ss_pred HHH----CCCCCChhh---HHHHHHHHhccCC--hhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHH
Q 010830 387 MIK----NEWQPTPLN---CATAITMLLDADE--PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 455 (499)
Q Consensus 387 ~~~----~~~~p~~~~---~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 455 (499)
+-+ .|- |...+ |..|...+.+.|- ++. ++..-..-.|.....+.|+.+|.. ++..+-.++++
T Consensus 257 AFKNYDEsGs-pRRttCLKYLVLANMLmkS~iNPFDs-----QEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~ 327 (440)
T KOG1464|consen 257 AFKNYDESGS-PRRTTCLKYLVLANMLMKSGINPFDS-----QEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERILK 327 (440)
T ss_pred HHhcccccCC-cchhHHHHHHHHHHHHHHcCCCCCcc-----cccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence 332 242 22222 3344444444331 110 001111124555667777877754 45555555444
No 346
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=76.66 E-value=45 Score=28.09 Aligned_cols=21 Identities=5% Similarity=0.169 Sum_probs=10.9
Q ss_pred HHHhCCChHHHHHHHHHHHHc
Q 010830 440 GLRNLGRLSDVRRFAEEMLNR 460 (499)
Q Consensus 440 ~~~~~g~~~~a~~~~~~m~~~ 460 (499)
+|-+...+++|++=++.+.+.
T Consensus 177 ayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHh
Confidence 344455555555555555543
No 347
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=76.36 E-value=4.4 Score=20.95 Aligned_cols=19 Identities=21% Similarity=0.365 Sum_probs=9.5
Q ss_pred HHHHHHHhcCCHHHHHHHH
Q 010830 222 ILLEGWEKEGNVEEANKTF 240 (499)
Q Consensus 222 ~ll~~~~~~g~~~~a~~~~ 240 (499)
.+...+...|+.++|..++
T Consensus 6 ~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 3444455555555555544
No 348
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.25 E-value=45 Score=27.93 Aligned_cols=90 Identities=8% Similarity=0.077 Sum_probs=52.3
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhcCCCCCCCH----hHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 010830 296 LDILVKLNDSTHAVQLWDIMVGIGFNLMPNL----IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECL 371 (499)
Q Consensus 296 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 371 (499)
...+...|++++|+..++...... .|. .+--.|.+.....|.+|+|+.+++.....+.. ......-.+.+
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t----~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDil 169 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQT----KDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDIL 169 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccc----hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHH
Confidence 455667778888877777666432 121 12223344556667777777777766553321 12223334556
Q ss_pred HhcCCHhHHHHHHHHHHHCC
Q 010830 372 IKNKRVHEVEKFFHEMIKNE 391 (499)
Q Consensus 372 ~~~g~~~~a~~~~~~~~~~~ 391 (499)
...|+-++|..-|+..++.+
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 170 LAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHcCchHHHHHHHHHHHHcc
Confidence 67777777777777776654
No 349
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=76.22 E-value=36 Score=33.31 Aligned_cols=91 Identities=9% Similarity=0.026 Sum_probs=52.2
Q ss_pred HhcCCCCCHHHHHHHHHhhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHH
Q 010830 73 ACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFAS 152 (499)
Q Consensus 73 ~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 152 (499)
...|...+...+..+...+.|++..|+.+++.+.... ....++ +.+.+++ |..+...+..
T Consensus 194 ~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~i~~~-~~~it~-------------~~V~~~l------g~~~~~~~~~ 253 (484)
T PRK14956 194 KIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFT-DSKLTG-------------VKIRKMI------GYHGIEFLTS 253 (484)
T ss_pred HHcCCCCCHHHHHHHHHHcCChHHHHHHHHHHHHHhC-CCCcCH-------------HHHHHHh------CCCCHHHHHH
Confidence 3446666666666666666777777777776432100 000111 1111111 4456666667
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCcCHH
Q 010830 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV 183 (499)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 183 (499)
++......+....|+.++++|.+.|..|...
T Consensus 254 l~~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 254 FIKSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 7776666666678888888888887666543
No 350
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=76.13 E-value=81 Score=30.81 Aligned_cols=181 Identities=11% Similarity=0.075 Sum_probs=120.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHH
Q 010830 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293 (499)
Q Consensus 214 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 293 (499)
..|....-+++..+.....+.-.+-+..+|.+- |- +...|..++.+|..+ ..++-..+++++.+..+. |...-.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~-~e---~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~R 136 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEY-GE---SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGR 136 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHh-cc---hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHH
Confidence 456667778888888888888888888888763 43 556888999999988 667778888888776532 333333
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHhcCCCCCC-----CHhHHHHHHHHHHcCCChHHHHHHHHHHHHC-CCCCCHHhHHHH
Q 010830 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMP-----NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH-GAFPDSLTYNMI 367 (499)
Q Consensus 294 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~l 367 (499)
.+..-|-+ ++...+...|..+...- ++. =...|..++..- ..+.+..+.+..++... |..--.+.+.-+
T Consensus 137 eLa~~yEk-ik~sk~a~~f~Ka~yrf--I~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv 211 (711)
T COG1747 137 ELADKYEK-IKKSKAAEFFGKALYRF--IPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDV 211 (711)
T ss_pred HHHHHHHH-hchhhHHHHHHHHHHHh--cchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence 44444444 78888888888777553 110 123566555432 34567777777776653 555556667777
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 010830 368 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406 (499)
Q Consensus 368 l~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 406 (499)
-.-|....++++|++++..+.+..- -|...-..++..+
T Consensus 212 ~~~Ys~~eN~~eai~Ilk~il~~d~-k~~~ar~~~i~~l 249 (711)
T COG1747 212 YKKYSENENWTEAIRILKHILEHDE-KDVWARKEIIENL 249 (711)
T ss_pred HHHhccccCHHHHHHHHHHHhhhcc-hhhhHHHHHHHHH
Confidence 7778888899999999988887642 3544444555443
No 351
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=76.10 E-value=15 Score=33.39 Aligned_cols=89 Identities=13% Similarity=0.001 Sum_probs=58.4
Q ss_pred hcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 010830 91 SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSF 170 (499)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 170 (499)
..|.+++|.+.|.......+.|++++..-..+|.+..++..|..=-+.....+..-...|.--+.+-...|...+|.+-+
T Consensus 109 KQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~ 188 (536)
T KOG4648|consen 109 KQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDC 188 (536)
T ss_pred hccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhH
Confidence 36788999999886655666788999999999999988887766555554443222334444444444555666666666
Q ss_pred HHHHhCCCCcC
Q 010830 171 DVMSMHGVEQD 181 (499)
Q Consensus 171 ~~m~~~g~~p~ 181 (499)
+..++. .|+
T Consensus 189 E~vL~L--EP~ 197 (536)
T KOG4648|consen 189 ETVLAL--EPK 197 (536)
T ss_pred HHHHhh--Ccc
Confidence 555543 555
No 352
>PRK11619 lytic murein transglycosylase; Provisional
Probab=75.83 E-value=1e+02 Score=31.82 Aligned_cols=274 Identities=10% Similarity=0.081 Sum_probs=139.4
Q ss_pred CchhHHHHHHhcCCCCCHHHHH-HHHH--hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 010830 64 SSDDIESALACTGIIPTPDLVH-EVLQ--LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMK 140 (499)
Q Consensus 64 ~~~~l~~~l~~~~~~~~~~~~~-~~l~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 140 (499)
+..++...+.+.+-.|-...+. ..+. ...+++...++++ ...+.+...--....+....|+.++|......+-
T Consensus 81 ~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW 156 (644)
T PRK11619 81 PAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELW 156 (644)
T ss_pred CHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 4556777777776655544333 2232 1234454444422 2245666666777788888899888888888887
Q ss_pred hCCCCCHHHHHHHHHHHHhcCChhHHH--HHHHHHHhCCCCcCHHHHHHHHHHHHcc-----------CCchHHHHHHHH
Q 010830 141 EDGVLSLPTFASIFDSYCGAGKYDEAV--MSFDVMSMHGVEQDVVAVNSLLSAICRQ-----------ENQTSRALEFLN 207 (499)
Q Consensus 141 ~~~~~~~~~~~~li~~~~~~g~~~~A~--~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----------~~~~~~a~~~~~ 207 (499)
..|......++.++..+.+.|.+.... +=++.+...| +......+...+... ..+...+...+.
T Consensus 157 ~~g~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~ 233 (644)
T PRK11619 157 LTGKSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFAR 233 (644)
T ss_pred ccCCCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhh
Confidence 777666777888888887666443322 2222222222 222222222221100 011111111111
Q ss_pred HHhccCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHhHccCCCCchH-HhHHHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 010830 208 RVKKIVDPDGDSFAILLEGWE--KEGNVEEANKTFGEMVERFEWNPEHV-LAYETFLITLIRGKQVDEALKFLRVMKGEN 284 (499)
Q Consensus 208 ~~~~~~~~~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 284 (499)
.+.++...-..++.++. ...+.+.|..++..+....++.++.. ..+..+.......+...++...++......
T Consensus 234 ----~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~ 309 (644)
T PRK11619 234 ----TTGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS 309 (644)
T ss_pred ----ccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc
Confidence 11223211121222221 24456888888887755434433221 223344333333332455555555433222
Q ss_pred CCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 010830 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353 (499)
Q Consensus 285 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 353 (499)
.+......-+......++++.+...+..|.... .-...-.--+.+++...|+.++|...|+.+.
T Consensus 310 --~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~---~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 310 --QSTSLLERRVRMALGTGDRRGLNTWLARLPMEA---KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred --CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh---ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 233444444555557777777777777765432 2233444455666666777787777777764
No 353
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=75.28 E-value=9.1 Score=20.97 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHH
Q 010830 433 SANELLVGLRNLGRLSDVRRFAEEMLN 459 (499)
Q Consensus 433 ~~~~ll~~~~~~g~~~~a~~~~~~m~~ 459 (499)
+|..+-..|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456666777788888888888887764
No 354
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=75.19 E-value=45 Score=29.66 Aligned_cols=87 Identities=10% Similarity=0.031 Sum_probs=44.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHH---
Q 010830 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC--- 337 (499)
Q Consensus 261 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~--- 337 (499)
|.+++..++|.+++...-+..+.--+....+...-|-.|.|.+....+.++-..-++.. -.-+..-|.+++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p--~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDP--SNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCc--ccCCchhhHHHHHHHHHHH
Confidence 56666667777766665444432212223444444555666666666666655555432 1122333555555443
Q ss_pred --cCCChHHHHHHH
Q 010830 338 --NNDDVDNVFRFF 349 (499)
Q Consensus 338 --~~~~~~~a~~~~ 349 (499)
-.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 346666666554
No 355
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=74.63 E-value=72 Score=29.53 Aligned_cols=156 Identities=8% Similarity=0.011 Sum_probs=87.4
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhCCC------------hHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010830 102 FRWAGRGQRLSPYAWNLMVDVLGKNGR------------FEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS 169 (499)
Q Consensus 102 ~~~~~~~~~~~~~~~~~li~~~~~~~~------------~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 169 (499)
|+...+..+.|+.+|-.++..--..-. .+.-+.++++..+.++.+...+...+..+.+..+.+...+.
T Consensus 8 l~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~ 87 (321)
T PF08424_consen 8 LNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKK 87 (321)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 333334577788888888865443321 34455667777777766777777777777777777777777
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHccC--CchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcc
Q 010830 170 FDVMSMHGVEQDVVAVNSLLSAICRQE--NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF 247 (499)
Q Consensus 170 ~~~m~~~g~~p~~~~~~~ll~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 247 (499)
|+++.... .-+...|...|....... -.++....+|.+..+ .+.......
T Consensus 88 we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~---------------------------~L~~~~~~~ 139 (321)
T PF08424_consen 88 WEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLR---------------------------ALSRRRSGR 139 (321)
T ss_pred HHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH---------------------------HHHHhhccc
Confidence 77776652 224555555555443310 223344444433211 111111100
Q ss_pred -CCCCc-------hHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCC
Q 010830 248 -EWNPE-------HVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285 (499)
Q Consensus 248 -~~~p~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 285 (499)
.-.++ -...+.-+...+.+.|..+.|+.+++.+.+.++
T Consensus 140 ~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 140 MTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 00000 122344455667778999999999999888654
No 356
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=74.28 E-value=38 Score=30.07 Aligned_cols=90 Identities=10% Similarity=0.048 Sum_probs=60.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 010830 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV 300 (499)
Q Consensus 221 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 300 (499)
..-|.++++.+++.++....-+.-+....-|. .....-|-.|.|.+.+..+.++-..-....-.-+...|.+++..|.
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyL 164 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYL 164 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHH
Confidence 34588888889999888877666443222332 2455667778888988888888776655332333445777766665
Q ss_pred H-----cCCHhHHHHHH
Q 010830 301 K-----LNDSTHAVQLW 312 (499)
Q Consensus 301 ~-----~~~~~~a~~~~ 312 (499)
. .|.+++|+++.
T Consensus 165 l~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 165 LHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHhccccHHHHHHHH
Confidence 4 58888888776
No 357
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.13 E-value=1.3e+02 Score=32.11 Aligned_cols=118 Identities=12% Similarity=0.165 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhHccC-CCCchHHhHHHHHHHHhcCCCH--HHHHHHHHHHhhCCCCCCHhhHHH-
Q 010830 219 SFAILLEGWEKEGNVEEANKTFGEMVERFE-WNPEHVLAYETFLITLIRGKQV--DEALKFLRVMKGENCFPTLKFFSN- 294 (499)
Q Consensus 219 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~p~~~~~~~~li~~~~~~~~~--~~a~~~~~~m~~~~~~p~~~~~~~- 294 (499)
-|..|+..|...|+.++|++++.+...... ..+.-...+...+..+.+.+.. +-++++-+...+..-.-....|..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 478899999999999999999999977421 1111122344456666555554 666666555554331111111211
Q ss_pred -----------HHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHc
Q 010830 295 -----------ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338 (499)
Q Consensus 295 -----------li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 338 (499)
.+-.|.+....+.+...++.+.... -.++....+.++..|++
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~--~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDN--RLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhc--cccchHHHHHHHHHHHH
Confidence 2344566777888888888888765 45677888888888864
No 358
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=73.80 E-value=9.8 Score=26.29 Aligned_cols=48 Identities=10% Similarity=0.185 Sum_probs=21.0
Q ss_pred hcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHH
Q 010830 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276 (499)
Q Consensus 229 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~ 276 (499)
...+.++|+..+....++..-.++--.+...++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555444222221123344444555555555544443
No 359
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=73.58 E-value=34 Score=25.33 Aligned_cols=79 Identities=10% Similarity=0.131 Sum_probs=39.0
Q ss_pred CchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010830 94 SPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173 (499)
Q Consensus 94 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 173 (499)
..++|..+.+|+.....-...+--.-+..+.+.|++++| +..-.....||...|.+|- -.+.|--+++...+.++
T Consensus 21 cH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEA---LLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRL 95 (116)
T ss_dssp -HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHH---HHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHH---HHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHH
Confidence 456677777776553333333334444556666777766 2222233345555554443 33556666666666666
Q ss_pred HhCC
Q 010830 174 SMHG 177 (499)
Q Consensus 174 ~~~g 177 (499)
...|
T Consensus 96 a~~g 99 (116)
T PF09477_consen 96 ASSG 99 (116)
T ss_dssp CT-S
T ss_pred HhCC
Confidence 5544
No 360
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=73.13 E-value=11 Score=20.61 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=11.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 010830 150 FASIFDSYCGAGKYDEAVMSFDVMS 174 (499)
Q Consensus 150 ~~~li~~~~~~g~~~~A~~~~~~m~ 174 (499)
|..+...|...|++++|.+.|++..
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444445555555555554443
No 361
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=72.77 E-value=8.9 Score=34.35 Aligned_cols=45 Identities=16% Similarity=0.149 Sum_probs=26.9
Q ss_pred CCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhH
Q 010830 248 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292 (499)
Q Consensus 248 ~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 292 (499)
.+.|+...-|+..|....+.||+++|++++++.++.|+.--..+|
T Consensus 251 ~v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 251 PMLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred ccCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 334444445566677777777777777777777666654433333
No 362
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=72.38 E-value=17 Score=22.39 Aligned_cols=31 Identities=13% Similarity=0.236 Sum_probs=16.0
Q ss_pred hCCChHHHHHHHHHHHHcCCccCHHHHHHHH
Q 010830 443 NLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 473 (499)
Q Consensus 443 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 473 (499)
+.|-.+++..++++|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3444555555555555555555555554444
No 363
>PHA02875 ankyrin repeat protein; Provisional
Probab=71.91 E-value=31 Score=33.28 Aligned_cols=206 Identities=11% Similarity=0.059 Sum_probs=101.3
Q ss_pred HHHHHHHhHccCCCCchHH-hHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHh--hHHHHHHHHHHcCCHhHHHHHHH
Q 010830 237 NKTFGEMVERFEWNPEHVL-AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK--FFSNALDILVKLNDSTHAVQLWD 313 (499)
Q Consensus 237 ~~~~~~~~~~~~~~p~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~~~~~~~~a~~~~~ 313 (499)
.++++.+.+. |..|+... ...+.+...+..|+.+-+ +.+.+.|..|+.. .....+...+..|+.+.+..+++
T Consensus 15 ~~iv~~Ll~~-g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 15 LDIARRLLDI-GINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD 89 (413)
T ss_pred HHHHHHHHHC-CCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH
Confidence 4566666664 77773221 123444555666776543 4444566555432 12334566667788876655554
Q ss_pred HHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHh--HHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010830 314 IMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLT--YNMIFECLIKNKRVHEVEKFFHEMIKNE 391 (499)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 391 (499)
.-.... ...+..-. +.+...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+-+. .+.+.|
T Consensus 90 ~~~~~~--~~~~~~g~-tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~----~Ll~~g 158 (413)
T PHA02875 90 LGKFAD--DVFYKDGM-TPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIE----LLIDHK 158 (413)
T ss_pred cCCccc--ccccCCCC-CHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHH----HHHhcC
Confidence 211100 00111112 233334455654 45555666676665432 123344445677765443 444455
Q ss_pred CCCC---hhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHH---HHHHHHHHhCCChHHHHHHHHHHHHcCCccC
Q 010830 392 WQPT---PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA---NELLVGLRNLGRLSDVRRFAEEMLNRRILIY 465 (499)
Q Consensus 392 ~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~---~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~ 465 (499)
..++ ..-.+.|.. .+..|+.+ +.+.+.+.|..++.... .+++...+..|+.+ +.+.+.+.|..++
T Consensus 159 ~~~~~~d~~g~TpL~~-A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n 229 (413)
T PHA02875 159 ACLDIEDCCGCTPLII-AMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCN 229 (413)
T ss_pred CCCCCCCCCCCCHHHH-HHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcc
Confidence 4333 222333433 34456655 44455566666554321 23444344556653 4555667787776
Q ss_pred HH
Q 010830 466 EV 467 (499)
Q Consensus 466 ~~ 467 (499)
..
T Consensus 230 ~~ 231 (413)
T PHA02875 230 IM 231 (413)
T ss_pred hH
Confidence 53
No 364
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.67 E-value=1.3e+02 Score=31.14 Aligned_cols=147 Identities=7% Similarity=0.043 Sum_probs=77.8
Q ss_pred CCchhHHHHHHHhcCCCCC--CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 010830 93 DSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSF 170 (499)
Q Consensus 93 ~~~~~a~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 170 (499)
+..++|++.-+......+. -...+...|..+.-.|++++|-...-.|... +..-|..-+..+...++......+
T Consensus 370 k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn---~~~eWe~~V~~f~e~~~l~~Ia~~- 445 (846)
T KOG2066|consen 370 KKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN---NAAEWELWVFKFAELDQLTDIAPY- 445 (846)
T ss_pred hHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc---hHHHHHHHHHHhccccccchhhcc-
Confidence 3455565555433222221 3467888999999999999999888888766 445566666666666554443322
Q ss_pred HHHHhCCCCcCHHHHHHHHHHHHcc------------CCchHHHHHHHHHHhc---cCCCCHHHHHHHHHHHHhcCCHHH
Q 010830 171 DVMSMHGVEQDVVAVNSLLSAICRQ------------ENQTSRALEFLNRVKK---IVDPDGDSFAILLEGWEKEGNVEE 235 (499)
Q Consensus 171 ~~m~~~g~~p~~~~~~~ll~~~~~~------------~~~~~~a~~~~~~~~~---~~~~~~~~~~~ll~~~~~~g~~~~ 235 (499)
+....-..+...|..++..+... .++.=.+..+.+.... ...-+...-..|+..|...+++..
T Consensus 446 --lPt~~~rL~p~vYemvLve~L~~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~Y~~ 523 (846)
T KOG2066|consen 446 --LPTGPPRLKPLVYEMVLVEFLASDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDNKYEK 523 (846)
T ss_pred --CCCCCcccCchHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHccChHH
Confidence 22111122444555555554431 0111111111111111 011122233447777888888888
Q ss_pred HHHHHHHHhH
Q 010830 236 ANKTFGEMVE 245 (499)
Q Consensus 236 a~~~~~~~~~ 245 (499)
|.+++-...+
T Consensus 524 Al~~ylklk~ 533 (846)
T KOG2066|consen 524 ALPIYLKLQD 533 (846)
T ss_pred HHHHHHhccC
Confidence 8877766644
No 365
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=71.55 E-value=47 Score=27.94 Aligned_cols=61 Identities=18% Similarity=0.101 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC
Q 010830 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283 (499)
Q Consensus 220 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 283 (499)
|..-..++.+.+.++.|++-.....+ +.|........-..+|-+...+++|+.-|..+.+.
T Consensus 137 y~Nraaa~iKl~k~e~aI~dcsKaie---l~pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 137 YSNRAAALIKLRKWESAIEDCSKAIE---LNPTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HhhhHHHHHHhhhHHHHHHHHHhhHh---cCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 33334445556666666655555433 34422222222234555566666666666665554
No 366
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.37 E-value=68 Score=27.81 Aligned_cols=56 Identities=7% Similarity=0.168 Sum_probs=29.3
Q ss_pred CChHHHHHHHHHHHHC--CCCCCHHhHHHHHH---HHHhcCCHhHHHHHHHHHHHCCCCCC
Q 010830 340 DDVDNVFRFFDQMVFH--GAFPDSLTYNMIFE---CLIKNKRVHEVEKFFHEMIKNEWQPT 395 (499)
Q Consensus 340 ~~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~---~~~~~g~~~~a~~~~~~~~~~~~~p~ 395 (499)
.++++|+..|+..-+. |-..+...-..++. --...+++.+|+++|++.....+.-+
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 3455556555555441 22222222222222 23456778888888888877654433
No 367
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=70.81 E-value=85 Score=28.68 Aligned_cols=65 Identities=14% Similarity=0.137 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHHHH----CCCCCCHHhHHHHHHH-HHhcCCHhHHHHHHHHHHHCC
Q 010830 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVF----HGAFPDSLTYNMIFEC-LIKNKRVHEVEKFFHEMIKNE 391 (499)
Q Consensus 327 ~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~ 391 (499)
..+-.....||+.|+-+.|++.+.+..+ .|.+.|+..+.+-+.- |....-+.+-++..+.+.+.|
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~G 174 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEG 174 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhC
Confidence 3444555566777776666666554433 3555565544443322 222233344444445555554
No 368
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=70.59 E-value=2.3e+02 Score=33.68 Aligned_cols=151 Identities=9% Similarity=-0.034 Sum_probs=96.9
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 010830 118 LMVDVLGKNGRFEQMWNAVRVMKEDGV---LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194 (499)
Q Consensus 118 ~li~~~~~~~~~~~a~~~~~~m~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 194 (499)
.+..+--+++.+.+|...++.-..... .....|..+...|..-+++|...-+...-. -+...+.-++.. ..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl~~qil~~-e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSLYQQILEH-EA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccHHHHHHHH-Hh
Confidence 444566677888999888887421111 122344455559999999999888876421 122223333322 33
Q ss_pred cCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHH-HHHHHHhcCCCHHHH
Q 010830 195 QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYE-TFLITLIRGKQVDEA 273 (499)
Q Consensus 195 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~-~li~~~~~~~~~~~a 273 (499)
. |++..|...|+.+....++....++-++......|.++.+.-..+....+ .++....|+ .=+.+-.+.++++..
T Consensus 1462 ~-g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~---~se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1462 S-GNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN---RSEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred h-ccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc---cCHHHHHHHHHHHHHHhhhcchhhh
Confidence 4 99999999999998766666888888888777888888887776666543 222232333 334455677888877
Q ss_pred HHHHH
Q 010830 274 LKFLR 278 (499)
Q Consensus 274 ~~~~~ 278 (499)
.+...
T Consensus 1538 e~~l~ 1542 (2382)
T KOG0890|consen 1538 ESYLS 1542 (2382)
T ss_pred hhhhh
Confidence 76655
No 369
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=70.44 E-value=7.7 Score=39.18 Aligned_cols=16 Identities=31% Similarity=0.470 Sum_probs=6.9
Q ss_pred HhhHHHHHHHHHHcCC
Q 010830 289 LKFFSNALDILVKLND 304 (499)
Q Consensus 289 ~~~~~~li~~~~~~~~ 304 (499)
..+|.-=|+.+|+..+
T Consensus 838 a~afgF~is~L~kL~d 853 (1102)
T KOG1924|consen 838 AQAFGFNISFLCKLRD 853 (1102)
T ss_pred chhhccchHHHHhhcc
Confidence 3444444444444433
No 370
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=69.86 E-value=7.7 Score=39.20 Aligned_cols=64 Identities=9% Similarity=0.021 Sum_probs=27.7
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCC
Q 010830 206 LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269 (499)
Q Consensus 206 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~ 269 (499)
|.++...++|+....+....-.-+...+..-+++.--+-.-.+-...|..+|.-=|+.+++..+
T Consensus 790 fse~vnniKP~i~avt~ACEE~rkSesFs~lLeLvLl~GNyMn~gSrNa~afgF~is~L~kL~d 853 (1102)
T KOG1924|consen 790 FSEQVNNIKPDIVAVTAACEELRKSESFSKLLELVLLVGNYMNSGSRNAQAFGFNISFLCKLRD 853 (1102)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcccccccccchhhccchHHHHhhcc
Confidence 3444556667766555444333333334333333332211111111144455555555555544
No 371
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=69.04 E-value=1.5e+02 Score=31.50 Aligned_cols=81 Identities=17% Similarity=0.108 Sum_probs=50.5
Q ss_pred HhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHH-CCCCChHHHHHHHHHHHHhCCChHHHHHHHH
Q 010830 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE-NGILPLEASANELLVGLRNLGRLSDVRRFAE 455 (499)
Q Consensus 377 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 455 (499)
.+.-.+.|.++.+---.-|..++..-...+...|++..|.+++.++.+ .|-.++-..|..++..+...|.- -...+++
T Consensus 1212 ld~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~-H~~t~~~ 1290 (1304)
T KOG1114|consen 1212 LDSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN-HLATFVK 1290 (1304)
T ss_pred hhhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch-HhHHHHh
Confidence 444556666665532223555666656666677888888888888774 55666777777766666666643 4444555
Q ss_pred HHH
Q 010830 456 EML 458 (499)
Q Consensus 456 ~m~ 458 (499)
.+.
T Consensus 1291 ~~~ 1293 (1304)
T KOG1114|consen 1291 NWM 1293 (1304)
T ss_pred hhe
Confidence 554
No 372
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=68.66 E-value=56 Score=27.04 Aligned_cols=64 Identities=11% Similarity=0.109 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHhCCCCCH---H-----HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcc
Q 010830 129 FEQMWNAVRVMKEDGVLSL---P-----TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195 (499)
Q Consensus 129 ~~~a~~~~~~m~~~~~~~~---~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 195 (499)
++.|+.+++.+.+...++. . .-...+..|.+.|.+++|.+++++... .|+......-+....+.
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~ 156 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIRE 156 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHc
Confidence 4667777777776653321 1 122345578999999999999999876 45555555555555554
No 373
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.60 E-value=70 Score=26.85 Aligned_cols=128 Identities=12% Similarity=0.074 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHH--HHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHH---
Q 010830 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM--IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT--- 401 (499)
Q Consensus 327 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~--- 401 (499)
..|..++.... .+.. +.....+++....-+-....+.. +...+...|++++|+.-++..+.. +....+..
T Consensus 55 ~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~ 129 (207)
T COG2976 55 AQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAA 129 (207)
T ss_pred HHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHH
Confidence 34555554443 2223 44555555555321111222222 234577888999998888877653 22223332
Q ss_pred --HHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 010830 402 --AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461 (499)
Q Consensus 402 --li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 461 (499)
|.+.....|.+|+|...++...+.++.+ .....--+.+...|+-++|..-|++.++.+
T Consensus 130 lRLArvq~q~~k~D~AL~~L~t~~~~~w~~--~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 130 LRLARVQLQQKKADAALKTLDTIKEESWAA--IVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHhhhHHHHHHHHhccccccHHH--HHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 4456667788999999888776655422 223333466888899999999999888775
No 374
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=67.73 E-value=20 Score=30.15 Aligned_cols=31 Identities=10% Similarity=-0.081 Sum_probs=16.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010830 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175 (499)
Q Consensus 145 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 175 (499)
|+..+|..++..+...|+.++|.++.+++..
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555555555555555555555555555543
No 375
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.71 E-value=89 Score=27.68 Aligned_cols=204 Identities=14% Similarity=0.086 Sum_probs=122.5
Q ss_pred cCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHhHccCCCCc-hHHhHHHHHHHHhcCCCHHHHHHHHHHHhh---CCC-
Q 010830 212 IVDPDGDSFAILLEG-WEKEGNVEEANKTFGEMVERFEWNPE-HVLAYETFLITLIRGKQVDEALKFLRVMKG---ENC- 285 (499)
Q Consensus 212 ~~~~~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~- 285 (499)
+-.||+..-|..-.. -.+..+.++|+.-|++..+-.|-.-+ .-.+...+|..+.+.+++++..+.|.+|.. ..+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 445666554432221 12345788999999998764222221 112344678888999999999998888753 111
Q ss_pred -CCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHh----HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC-
Q 010830 286 -FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI----MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFP- 359 (499)
Q Consensus 286 -~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p- 359 (499)
.-+....+++++..+...+.+....+|+.-++.-. -..+.. |-+.|...|...+++.+..++++++...--.-
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALk-dAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALK-DAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH-hhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 23456777888877777777777777776543210 011222 33567777888888888888888887641111
Q ss_pred ---C-------HHhHHHHHHHHHhcCCHhHHHHHHHHHHHCC-CCCChhhHHHHHHHHh-----ccCChhHHHH
Q 010830 360 ---D-------SLTYNMIFECLIKNKRVHEVEKFFHEMIKNE-WQPTPLNCATAITMLL-----DADEPEIAIE 417 (499)
Q Consensus 360 ---~-------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~li~~~~-----~~g~~~~a~~ 417 (499)
| ...|..=|+.|....+-.....+++..+... --|.+.. ..+|+-|. +.|.+++|-.
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHHcCCccccccchHHHHHh
Confidence 1 1246666777777777777777777765532 2244333 33455443 4567776654
No 376
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=67.65 E-value=34 Score=33.81 Aligned_cols=63 Identities=13% Similarity=0.097 Sum_probs=31.3
Q ss_pred CchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHH
Q 010830 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI 262 (499)
Q Consensus 197 ~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~ 262 (499)
|....|-.++.+..........++..+.++|.-..+++.|++.|++..+. .|.+...-+.|..
T Consensus 656 ~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~---~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 656 GLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKL---TTKCPECENSLKL 718 (886)
T ss_pred hhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc---CCCChhhHHHHHH
Confidence 44444555554443322334445555555666666666666666655332 4444444444433
No 377
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=67.44 E-value=1.5e+02 Score=30.38 Aligned_cols=43 Identities=21% Similarity=0.241 Sum_probs=27.0
Q ss_pred HHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc
Q 010830 187 SLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230 (499)
Q Consensus 187 ~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 230 (499)
.+|--|.++ |++++|.++....++........+...+..|...
T Consensus 116 a~Iyy~LR~-G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRC-GDYDEALEVANENRNQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTT-T-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhc-CCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence 345555666 7777777777666666666666666777777654
No 378
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=67.31 E-value=1.3e+02 Score=29.41 Aligned_cols=81 Identities=10% Similarity=-0.032 Sum_probs=60.5
Q ss_pred hhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHH
Q 010830 96 SSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAG-KYDEAVMSFDVMS 174 (499)
Q Consensus 96 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~ 174 (499)
.....+|+.+...+..|+..|...+.-+-+.+.+.+.-.+|..|...++.++..|-........-+ +++.|..+|..-.
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 344555666655677799999999988888888999999999999998877777766555544444 4888888887765
Q ss_pred hC
Q 010830 175 MH 176 (499)
Q Consensus 175 ~~ 176 (499)
+.
T Consensus 168 R~ 169 (568)
T KOG2396|consen 168 RF 169 (568)
T ss_pred hc
Confidence 54
No 379
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=67.27 E-value=34 Score=28.20 Aligned_cols=62 Identities=8% Similarity=0.032 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC----C-------hhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 010830 130 EQMWNAVRVMKEDGVLSLPTFASIFDSYCGAG----K-------YDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC 193 (499)
Q Consensus 130 ~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g----~-------~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 193 (499)
++|+.-|++....++....++..+..+|...+ + +++|.+.|+...+. .|+...|+.-+....
T Consensus 52 edAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 52 EDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA 124 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH
Confidence 34444455555555555667777777666544 2 44455555554443 777777777777654
No 380
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=67.26 E-value=98 Score=28.02 Aligned_cols=118 Identities=14% Similarity=0.198 Sum_probs=62.4
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHH-HhhCCCCCCHh
Q 010830 212 IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV-MKGENCFPTLK 290 (499)
Q Consensus 212 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~-m~~~~~~p~~~ 290 (499)
-++|+..+-......+...|--+-..-.-.++.. +- -...-..|..-..+...+++......+ |++.++ |+..
T Consensus 218 ffPpnkrs~E~Fak~Ft~agL~elvey~~~q~~~--~a---~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nl-Pe~e 291 (412)
T KOG2297|consen 218 FFPPNKRSVEHFAKYFTDAGLKELVEYHRNQQSE--GA---RKELQKELQEQVSEEDPVKEVILYVKEEMKRNNL-PETE 291 (412)
T ss_pred hcCCcchhHHHHHHHHhHhhHHHHHHHHHHHHHH--HH---HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCC-CCce
Confidence 3478877777777777666644333222111111 00 011223344445555667777766644 555554 5543
Q ss_pred ----hHHHHHHHHHHcCCHhHHHHHH-HHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHH
Q 010830 291 ----FFSNALDILVKLNDSTHAVQLW-DIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346 (499)
Q Consensus 291 ----~~~~li~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 346 (499)
.|..++++-- |.+-+++. ++.++ ....|..|+.++|..|+.+-.+
T Consensus 292 Vi~ivWs~iMsave----WnKkeelva~qalr-------hlK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 292 VIGIVWSGIMSAVE----WNKKEELVAEQALR-------HLKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred EEeeeHhhhhHHHh----hchHHHHHHHHHHH-------HHHhhhHHHHHHhcCChHHHHH
Confidence 4566665543 32222221 22222 3456888999999999877654
No 381
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=65.36 E-value=46 Score=23.60 Aligned_cols=58 Identities=14% Similarity=0.045 Sum_probs=28.3
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcc
Q 010830 133 WNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195 (499)
Q Consensus 133 ~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 195 (499)
.++++.+.+.|+.+......+-.+--..|+.+.|.+++..+. .| ...|...+.++-..
T Consensus 22 ~~v~d~ll~~~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT 79 (88)
T cd08819 22 RDVCDKCLEQGLLTEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRET 79 (88)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHc
Confidence 345555555555444444444433334456666666666555 32 22344444444444
No 382
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=65.08 E-value=95 Score=27.08 Aligned_cols=119 Identities=11% Similarity=0.008 Sum_probs=70.0
Q ss_pred HHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHH
Q 010830 123 LGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRA 202 (499)
Q Consensus 123 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a 202 (499)
|-...+++.|+..|.+....++..+.-|+.-+..+.+..+++.+..--.+.++. .||..--...+..+......++.|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccHH
Confidence 344456677777777666666655566777777777777777776655555543 666666666655544443667777
Q ss_pred HHHHHHHhc-----cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010830 203 LEFLNRVKK-----IVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243 (499)
Q Consensus 203 ~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 243 (499)
...+.+..+ ...+-......|..+--+.-...+..++.++.
T Consensus 98 I~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 98 IKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 777666522 23333444555555544444444555544444
No 383
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=65.01 E-value=28 Score=24.11 Aligned_cols=46 Identities=17% Similarity=0.259 Sum_probs=20.7
Q ss_pred ccCChhHHHHHHHHHHHCCCCChH--HHHHHHHHHHHhCCChHHHHHH
Q 010830 408 DADEPEIAIEIWNYILENGILPLE--ASANELLVGLRNLGRLSDVRRF 453 (499)
Q Consensus 408 ~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~ 453 (499)
...+.++|+..|+...+.-..+.. .++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555554432222111 2344445555555555554443
No 384
>PRK10941 hypothetical protein; Provisional
Probab=64.97 E-value=1e+02 Score=27.64 Aligned_cols=77 Identities=6% Similarity=-0.062 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCcCHHHHHHHHHH
Q 010830 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH-GVEQDVVAVNSLLSA 191 (499)
Q Consensus 115 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~ 191 (499)
..+.+-.+|.+.++++.|+.+.+.+..-.+.++.-+.--.-.|.+.|.+..|..=++...+. .-.|+.......+..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 45556666777788888888888777777777766666666777777777777777766543 223444444444443
No 385
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=64.64 E-value=53 Score=24.05 Aligned_cols=85 Identities=8% Similarity=0.093 Sum_probs=43.2
Q ss_pred chhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010830 95 PSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174 (499)
Q Consensus 95 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 174 (499)
-++|.-+-+|+.....-...+--.-+..+...|++++|..+.+.+. .||...|.+|-. .+.|-.+.+..-+.+|.
T Consensus 21 HqEA~tIAdwL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~---~pdlepw~ALce--~rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 21 HQEANTIADWLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKLC---YPDLEPWLALCE--WRLGLGSALESRLNRLA 95 (115)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCCC---CchHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 4566666666644222222222333455666677776666654442 455555554433 34455555555566665
Q ss_pred hCCCCcCHHHH
Q 010830 175 MHGVEQDVVAV 185 (499)
Q Consensus 175 ~~g~~p~~~~~ 185 (499)
.+| .|....|
T Consensus 96 ~sg-~p~lq~F 105 (115)
T TIGR02508 96 ASG-DPRLQTF 105 (115)
T ss_pred hCC-CHHHHHH
Confidence 555 4444333
No 386
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=64.12 E-value=30 Score=21.27 Aligned_cols=34 Identities=15% Similarity=0.129 Sum_probs=20.3
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 010830 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS 190 (499)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 190 (499)
..+.|-..++..+++.|.+.|+.-+...|..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3445556666666666666666666665555543
No 387
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=63.71 E-value=85 Score=28.84 Aligned_cols=87 Identities=11% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHC---CCCCChhhH--HHHHHHHhccCChhHHHHHHHHHHH-----CCCCChHHHHH
Q 010830 366 MIFECLIKNKRVHEVEKFFHEMIKN---EWQPTPLNC--ATAITMLLDADEPEIAIEIWNYILE-----NGILPLEASAN 435 (499)
Q Consensus 366 ~ll~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~ 435 (499)
.++...-+.++.++|.++++++.+. .-.|+...| +.....+...|+..++.+++++..+ .++++++.+--
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~f 159 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSF 159 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhH
Q ss_pred HHHHH--HHhCCChHHHHH
Q 010830 436 ELLVG--LRNLGRLSDVRR 452 (499)
Q Consensus 436 ~ll~~--~~~~g~~~~a~~ 452 (499)
..+.. |.+.|++....+
T Consensus 160 Y~lssqYyk~~~d~a~yYr 178 (380)
T KOG2908|consen 160 YSLSSQYYKKIGDFASYYR 178 (380)
T ss_pred HHHHHHHHHHHHhHHHHHH
No 388
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=63.71 E-value=26 Score=22.99 Aligned_cols=27 Identities=19% Similarity=0.512 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHH
Q 010830 433 SANELLVGLRNLGRLSDVRRFAEEMLN 459 (499)
Q Consensus 433 ~~~~ll~~~~~~g~~~~a~~~~~~m~~ 459 (499)
-.-.+|.+|...|++++|.++++++.+
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334456777777777777777776653
No 389
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=63.52 E-value=56 Score=23.94 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=13.3
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCcCHHHHHHH
Q 010830 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSL 188 (499)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 188 (499)
+.+.|+|++|..+.+.+. .||...|-+|
T Consensus 49 LmNrG~Yq~Al~l~~~~~----~pdlepw~AL 76 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKLC----YPDLEPWLAL 76 (115)
T ss_pred HHccchHHHHHHhcCCCC----CchHHHHHHH
Confidence 344455555555544441 4555544444
No 390
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=62.91 E-value=1.9e+02 Score=29.89 Aligned_cols=115 Identities=18% Similarity=0.237 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhCC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHH----------HHHHHHHHHcc
Q 010830 130 EQMWNAVRVMKEDG----VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVA----------VNSLLSAICRQ 195 (499)
Q Consensus 130 ~~a~~~~~~m~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~----------~~~ll~~~~~~ 195 (499)
++-...+.+|+.+- +....+-..++-.|....+++...++.+.+++. ||..- |...++---+.
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~ 256 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRP 256 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCC
Confidence 34445566666542 456667777788888888888888888888763 43221 22222221223
Q ss_pred CCchHHHHHHHHHHhc---cCCCCHHHHH-----H--HHHHHHhcCCHHHHHHHHHHHhHccCCCC
Q 010830 196 ENQTSRALEFLNRVKK---IVDPDGDSFA-----I--LLEGWEKEGNVEEANKTFGEMVERFEWNP 251 (499)
Q Consensus 196 ~~~~~~a~~~~~~~~~---~~~~~~~~~~-----~--ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 251 (499)
|+-++|+...-.+.+ .+.||..+.. . +-..|...+..+.|.+.|++. +.+.|
T Consensus 257 -GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~Wyrka---FeveP 318 (1226)
T KOG4279|consen 257 -GDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKA---FEVEP 318 (1226)
T ss_pred -ccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHH---hccCc
Confidence 667777766555432 4556644321 1 112344455666777777776 44565
No 391
>PRK09687 putative lyase; Provisional
Probab=62.84 E-value=1.2e+02 Score=27.44 Aligned_cols=201 Identities=11% Similarity=0.008 Sum_probs=98.4
Q ss_pred CHHHHHHHHHHHHhcCCH----HHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCC-----HHHHHHHHHHHhhCCCC
Q 010830 216 DGDSFAILLEGWEKEGNV----EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ-----VDEALKFLRVMKGENCF 286 (499)
Q Consensus 216 ~~~~~~~ll~~~~~~g~~----~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~-----~~~a~~~~~~m~~~~~~ 286 (499)
|...-...+.++++.|+. +++...+..+..+ .+ +...-...+.++...+. ...+...+......
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~---D~-d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D--- 139 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE---DK-SACVRASAINATGHRCKKNPLYSPKIVEQSQITAFD--- 139 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc---CC-CHHHHHHHHHHHhcccccccccchHHHHHHHHHhhC---
Confidence 444444445555555542 3455555554222 22 33344444444444432 12223333222222
Q ss_pred CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCC-ChHHHHHHHHHHHHCCCCCCHHhHH
Q 010830 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND-DVDNVFRFFDQMVFHGAFPDSLTYN 365 (499)
Q Consensus 287 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~ 365 (499)
++..+-...+.++.+.++. .+...+-.+.+. +|..+-..-+.++.+.+ +...+...+..+... +|...-.
T Consensus 140 ~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d-----~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~ 210 (280)
T PRK09687 140 KSTNVRFAVAFALSVINDE-AAIPLLINLLKD-----PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQD---KNEEIRI 210 (280)
T ss_pred CCHHHHHHHHHHHhccCCH-HHHHHHHHHhcC-----CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC---CChHHHH
Confidence 2444445566666666653 455555555542 24444455555555543 234555555555542 4666666
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHH
Q 010830 366 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 441 (499)
Q Consensus 366 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 441 (499)
..+.++.+.|+ ..+...+-...+.+ + .....+.++...|.. +|...+..+.+. .+|..+-...+.++
T Consensus 211 ~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 211 EAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 67777777776 34555555554433 1 234566666677765 466666666652 23544444444443
No 392
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.76 E-value=2.2e+02 Score=30.11 Aligned_cols=67 Identities=13% Similarity=0.002 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc
Q 010830 414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 482 (499)
Q Consensus 414 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 482 (499)
.+...++-....--.-+...+|.++..|++..+-+.- ..++.....+-. ..+-....++.|.+.+..
T Consensus 611 ~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~ll-~~le~~~~~~~~-~~YDl~~alRlc~~~~~~ 677 (911)
T KOG2034|consen 611 QAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDDLL-LYLEIIKFMKSR-VHYDLDYALRLCLKFKKT 677 (911)
T ss_pred HHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccchH-HHHHHHhhcccc-ceecHHHHHHHHHHhCcc
Confidence 3444444333333345677888888888776554333 333322211111 333445556666666654
No 393
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=61.58 E-value=21 Score=18.94 Aligned_cols=27 Identities=11% Similarity=-0.063 Sum_probs=13.9
Q ss_pred ChHHHHHHHHHHHhCCCCCHHHHHHHH
Q 010830 128 RFEQMWNAVRVMKEDGVLSLPTFASIF 154 (499)
Q Consensus 128 ~~~~a~~~~~~m~~~~~~~~~~~~~li 154 (499)
+.+.|..+|+.+....+.+...|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 445555566555555444444444443
No 394
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=60.78 E-value=1.6e+02 Score=28.30 Aligned_cols=95 Identities=12% Similarity=0.122 Sum_probs=68.1
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHh
Q 010830 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 478 (499)
Q Consensus 399 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 478 (499)
...|+.-|...|+..+|.+.++++- ..+--...++.+++.+.-+.|+-.....++++.-..|+ .|.+.+-++|.+
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLg-mPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf~R 586 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELG-MPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhC-CCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhhhh
Confidence 4567888888999999998887652 22334567888888888888988888888888776653 455666666665
Q ss_pred cccc----------hHHHHHHHHHHHhhcC
Q 010830 479 ESRS----------MRDIFDSLERRCKTSQ 498 (499)
Q Consensus 479 ~g~~----------a~~~~~~~~~~~~~~~ 498 (499)
-.+. |.+.|+..++.++...
T Consensus 587 V~dsl~DlsLDvPna~ekf~~~Ve~~~~~G 616 (645)
T KOG0403|consen 587 VYDSLPDLSLDVPNAYEKFERYVEECFQNG 616 (645)
T ss_pred hhccCcccccCCCcHHHHHHHHHHHHHHcC
Confidence 5432 7777777777776654
No 395
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=60.18 E-value=1.3e+02 Score=26.90 Aligned_cols=28 Identities=36% Similarity=0.321 Sum_probs=19.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010830 215 PDGDSFAILLEGWEKEGNVEEANKTFGE 242 (499)
Q Consensus 215 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 242 (499)
-|...+..+...|.+.|++.+|+..|-.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 4667778888888888888888776643
No 396
>PRK12798 chemotaxis protein; Reviewed
Probab=60.14 E-value=1.6e+02 Score=28.09 Aligned_cols=195 Identities=12% Similarity=0.086 Sum_probs=120.9
Q ss_pred cCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCC---HHHHHHHHHHHHhcCCHHHH
Q 010830 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPD---GDSFAILLEGWEKEGNVEEA 236 (499)
Q Consensus 160 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a 236 (499)
.|+-.+|.+.+..+...-..+...-|-.|+.+-.....+...|+++|++.+--.+-+ .....--+......|+.+++
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf 204 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKF 204 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHH
Confidence 689999999999998777788888898888887766689999999999876432222 22333345566789999998
Q ss_pred HHHHHHHhHccCCCCchHHhHHHHHHHHhcCC---CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHH
Q 010830 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGK---QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313 (499)
Q Consensus 237 ~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 313 (499)
..+-.+...++...|--..-+..+...+.+.+ ..+....++..|.... -...|..+-..-.-.|+.+.|.-.-+
T Consensus 205 ~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~---q~~lYL~iAR~Ali~Gk~~lA~~As~ 281 (421)
T PRK12798 205 EALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPER---QRELYLRIARAALIDGKTELARFASE 281 (421)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchh---HHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88877777766655532223333444444443 3334444444433221 24578778888888899888887777
Q ss_pred HHHhcCCCCCCC---HhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC
Q 010830 314 IMVGIGFNLMPN---LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFP 359 (499)
Q Consensus 314 ~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 359 (499)
+.......-..+ ...|..... .-..+++.+.+.+..+......+
T Consensus 282 ~A~~L~~~~~~~~~ra~LY~aaa~--v~s~~~~~al~~L~~I~~~~L~~ 328 (421)
T PRK12798 282 RALKLADPDSADAARARLYRGAAL--VASDDAESALEELSQIDRDKLSE 328 (421)
T ss_pred HHHHhccCCCcchHHHHHHHHHHc--cCcccHHHHHHHHhcCChhhCCh
Confidence 766543100111 112222211 12345667776666665544443
No 397
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=59.93 E-value=66 Score=32.63 Aligned_cols=93 Identities=14% Similarity=0.046 Sum_probs=40.8
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHH
Q 010830 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGL 335 (499)
Q Consensus 256 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 335 (499)
.|..-+..+...++.. ...++.+...--..+.....-++..|.+.|-.+.+..+.+.+-.+- . ...-|..-+..
T Consensus 374 lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~--~--~~~~~g~AL~~ 447 (566)
T PF07575_consen 374 LWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRL--L--KEGRYGEALSW 447 (566)
T ss_dssp THHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH--H--HHHHHHHHHHH
T ss_pred hHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--H--HCCCHHHHHHH
Confidence 4555555555444322 4444444443333445556667777888887777777777665442 1 23456666667
Q ss_pred HHcCCChHHHHHHHHHHHH
Q 010830 336 LCNNDDVDNVFRFFDQMVF 354 (499)
Q Consensus 336 ~~~~~~~~~a~~~~~~m~~ 354 (499)
+.++|+...+..+-+.+.+
T Consensus 448 ~~ra~d~~~v~~i~~~ll~ 466 (566)
T PF07575_consen 448 FIRAGDYSLVTRIADRLLE 466 (566)
T ss_dssp HH-----------------
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 7778877777666666554
No 398
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=59.87 E-value=64 Score=25.70 Aligned_cols=43 Identities=16% Similarity=0.001 Sum_probs=19.7
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcc
Q 010830 438 LVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 480 (499)
Q Consensus 438 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 480 (499)
+..+...++.-.|.++++++.+.+...+..|.-.-++.+...|
T Consensus 27 l~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 27 LELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3444444444455555555554444444444444444444444
No 399
>PRK11619 lytic murein transglycosylase; Provisional
Probab=59.66 E-value=2.2e+02 Score=29.48 Aligned_cols=339 Identities=8% Similarity=0.034 Sum_probs=163.4
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHH
Q 010830 109 QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSL 188 (499)
Q Consensus 109 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 188 (499)
.+.....-...+..+++.+++...+..+ ...+.+...-.....+....|+.++|.+....+-..| ......++.+
T Consensus 95 ~P~~~~Lr~~~l~~La~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l 169 (644)
T PRK11619 95 LPPARSLQSRFVNELARREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKL 169 (644)
T ss_pred CchHHHHHHHHHHHHHHccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHH
Confidence 3344445555566677777877766632 1224455666777788888898888877777775555 4456677777
Q ss_pred HHHHHccCCchHHHHHHHHHHhc----c-----------CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCc
Q 010830 189 LSAICRQENQTSRALEFLNRVKK----I-----------VDPDGD-SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252 (499)
Q Consensus 189 l~~~~~~~~~~~~a~~~~~~~~~----~-----------~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 252 (499)
+..+.+. |.+.... +..++.. + +.++.. ....++..+.+ ...+...+.. +.|
T Consensus 170 ~~~~~~~-g~lt~~d-~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~---p~~~~~~~~~------~~~- 237 (644)
T PRK11619 170 FSVWQQS-GKQDPLA-YLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQND---PNTVETFART------TGP- 237 (644)
T ss_pred HHHHHHc-CCCCHHH-HHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHC---HHHHHHHhhc------cCC-
Confidence 7777755 4333322 2222211 0 111111 11111111111 1111111111 111
Q ss_pred hHHhHHHHHHHH--hcCCCHHHHHHHHHHHhhCC-CCCCHh--hHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHh
Q 010830 253 HVLAYETFLITL--IRGKQVDEALKFLRVMKGEN-CFPTLK--FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327 (499)
Q Consensus 253 ~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~~-~~p~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 327 (499)
+...-..++.++ ....+.+.|..++....... ..+... +...+.......+...++.+.++...... .+..
T Consensus 238 ~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~----~~~~ 313 (644)
T PRK11619 238 TDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS----QSTS 313 (644)
T ss_pred ChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc----CCcH
Confidence 111111111111 12355677888887764433 222221 22333322333322556666666544332 2444
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 010830 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 407 (499)
Q Consensus 328 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 407 (499)
....-+..-.+.++++.+...+..|.... .-...-.--+.+++...|+.++|..+|+.+... . ..|..|...-
T Consensus 314 ~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~---~--~fYG~LAa~~- 386 (644)
T PRK11619 314 LLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ---R--GFYPMVAAQR- 386 (644)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC---C--CcHHHHHHHH-
Confidence 45555555567888888888888875532 223333344556666688888888888887431 1 2344433222
Q ss_pred ccCChhHH-HHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc
Q 010830 408 DADEPEIA-IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 482 (499)
Q Consensus 408 ~~g~~~~a-~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 482 (499)
.|..-.. ...... ....+..+. --.-+..+...|+...|...+..+.+. .+......+.....+.|..
T Consensus 387 -Lg~~~~~~~~~~~~-~~~~~~~~~--~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~ 455 (644)
T PRK11619 387 -LGEEYPLKIDKAPK-PDSALTQGP--EMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWW 455 (644)
T ss_pred -cCCCCCCCCCCCCc-hhhhhccCh--HHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCH
Confidence 2221000 000000 000000000 111234466779999999888887764 2444445555544555544
No 400
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=59.65 E-value=1.6e+02 Score=28.00 Aligned_cols=55 Identities=11% Similarity=0.112 Sum_probs=31.5
Q ss_pred HHHHHcCCHhHHHHHHHHHHhcCCCCCCCHh--HHHHHHHHHH--cCCChHHHHHHHHHHHH
Q 010830 297 DILVKLNDSTHAVQLWDIMVGIGFNLMPNLI--MYNAVIGLLC--NNDDVDNVFRFFDQMVF 354 (499)
Q Consensus 297 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~~li~~~~--~~~~~~~a~~~~~~m~~ 354 (499)
..+.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r---l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR---LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh---CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3444667777777777777764 223332 4444444443 34456677777776655
No 401
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=59.21 E-value=1.4e+02 Score=26.93 Aligned_cols=100 Identities=10% Similarity=0.025 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHc---cCCCCchH-HhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCH-
Q 010830 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVER---FEWNPEHV-LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL- 289 (499)
Q Consensus 215 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~p~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~- 289 (499)
--...+..+...|++.++.+.+.+..++..++ .|.+. |+ .+--.|.-.|....-.++.++..+.|.+.|...+.
T Consensus 113 e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~Ki-Dv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRr 191 (412)
T COG5187 113 EGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKI-DVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERR 191 (412)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccch-hhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhh
Confidence 34567778889999999999998887776553 24444 22 11112222333334467777888888888754432
Q ss_pred ---hhHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 010830 290 ---KFFSNALDILVKLNDSTHAVQLWDIMVG 317 (499)
Q Consensus 290 ---~~~~~li~~~~~~~~~~~a~~~~~~~~~ 317 (499)
.+|..+.. ....++.+|-.++-+...
T Consensus 192 NRyK~Y~Gi~~--m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 192 NRYKVYKGIFK--MMRRNFKEAAILLSDILP 220 (412)
T ss_pred hhHHHHHHHHH--HHHHhhHHHHHHHHHHhc
Confidence 23333221 123456677777666554
No 402
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=58.67 E-value=1.4e+02 Score=26.84 Aligned_cols=28 Identities=14% Similarity=0.221 Sum_probs=15.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhHccCCCC
Q 010830 223 LLEGWEKEGNVEEANKTFGEMVERFEWNP 251 (499)
Q Consensus 223 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 251 (499)
+.+-.++.+++++|+..+.++..+ |+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~k-g~s~ 36 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGK-GVSK 36 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcC-CCCh
Confidence 444555556666666666666554 5544
No 403
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=58.27 E-value=51 Score=27.73 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=11.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010830 215 PDGDSFAILLEGWEKEGNVEEANKTFGEM 243 (499)
Q Consensus 215 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 243 (499)
|+..+|..++..+...|+.++|.++..++
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444444444444444444443333
No 404
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=57.47 E-value=28 Score=31.31 Aligned_cols=42 Identities=12% Similarity=-0.002 Sum_probs=27.2
Q ss_pred ChHHH-HHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHH
Q 010830 429 PLEAS-ANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 470 (499)
Q Consensus 429 p~~~~-~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 470 (499)
||... |+.-|....+.||+++|+++++|..+.|+.--..+|-
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 44433 4567777777777777777777777777654444443
No 405
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=55.58 E-value=39 Score=22.14 Aligned_cols=24 Identities=13% Similarity=0.091 Sum_probs=11.1
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHH
Q 010830 330 NAVIGLLCNNDDVDNVFRFFDQMV 353 (499)
Q Consensus 330 ~~li~~~~~~~~~~~a~~~~~~m~ 353 (499)
-.+|.+|...|++++|.++++++.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334445555555555555444443
No 406
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=55.46 E-value=1.2e+02 Score=25.34 Aligned_cols=14 Identities=36% Similarity=0.503 Sum_probs=7.2
Q ss_pred cCCHHHHHHHHHHH
Q 010830 230 EGNVEEANKTFGEM 243 (499)
Q Consensus 230 ~g~~~~a~~~~~~~ 243 (499)
.|+++.|.+.++-|
T Consensus 134 ~~~~~~Ae~~~~~M 147 (204)
T COG2178 134 KGSFEEAERFLKFM 147 (204)
T ss_pred hccHHHHHHHHHHH
Confidence 45555555555544
No 407
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=54.98 E-value=86 Score=23.34 Aligned_cols=29 Identities=21% Similarity=0.228 Sum_probs=12.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010830 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244 (499)
Q Consensus 214 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 244 (499)
.||...|.+|.. .+.|--+++...+.++.
T Consensus 68 ~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 68 YPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp -GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred CccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 345555444432 24455555555555443
No 408
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=53.74 E-value=81 Score=22.70 Aligned_cols=53 Identities=13% Similarity=0.181 Sum_probs=28.7
Q ss_pred HHhCCChHHHHHHHHHHHh----CCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010830 123 LGKNGRFEQMWNAVRVMKE----DGVLS-----LPTFASIFDSYCGAGKYDEAVMSFDVMSM 175 (499)
Q Consensus 123 ~~~~~~~~~a~~~~~~m~~----~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 175 (499)
..+.|++..|.+.+.+.-+ .+... ....-.+.......|++++|.+.+++.++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3556777777554443332 22222 12233344556667777777777777653
No 409
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=53.62 E-value=1.8e+02 Score=26.51 Aligned_cols=170 Identities=15% Similarity=0.179 Sum_probs=82.1
Q ss_pred CCHHHHHHHHH-HHHhcCC-HHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhH
Q 010830 215 PDGDSFAILLE-GWEKEGN-VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292 (499)
Q Consensus 215 ~~~~~~~~ll~-~~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 292 (499)
++..+++.|.+ .+.+.|- ..-|.++|...... ...+.++.++.+.+.-+.-+++| +|+..+-
T Consensus 163 ~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~E--------k~i~~lis~Lrkg~md~rLmeff--------Ppnkrs~ 226 (412)
T KOG2297|consen 163 LPATVLQSLLNDNLVKEGIALSFAVKLFKEWLVE--------KDINDLISSLRKGKMDDRLMEFF--------PPNKRSV 226 (412)
T ss_pred CCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhh--------ccHHHHHHHHHhcChHhHHHHhc--------CCcchhH
Confidence 44444444443 3334442 34466777776543 13567788777776666555544 4555555
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHH-HHHHCCCCCCH----HhHHHH
Q 010830 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD-QMVFHGAFPDS----LTYNMI 367 (499)
Q Consensus 293 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~-~m~~~g~~p~~----~~~~~l 367 (499)
......+...|--+...-.-.++... .--..-..|..-..+...+++.....+ +|++.++ |+. ..|..+
T Consensus 227 E~Fak~Ft~agL~elvey~~~q~~~~-----a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~i 300 (412)
T KOG2297|consen 227 EHFAKYFTDAGLKELVEYHRNQQSEG-----ARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGI 300 (412)
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhh
Confidence 54444444444322211111111000 001111222222334445566555554 5555544 454 357777
Q ss_pred HHHHHhcCCHh-HHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHH
Q 010830 368 FECLIKNKRVH-EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 415 (499)
Q Consensus 368 l~~~~~~g~~~-~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 415 (499)
+++---+..-+ -|.+.++. ..+|.-|+.+++..|+.+..
T Consensus 301 MsaveWnKkeelva~qalrh---------lK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 301 MSAVEWNKKEELVAEQALRH---------LKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred hHHHhhchHHHHHHHHHHHH---------HHhhhHHHHHHhcCChHHHH
Confidence 76544332211 12223322 34688899999999987754
No 410
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=53.27 E-value=51 Score=20.82 Aligned_cols=35 Identities=23% Similarity=0.171 Sum_probs=21.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHH
Q 010830 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSL 188 (499)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 188 (499)
.+.-++.+.|+++.|.+..+.+.+. .|+..-...|
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~L 40 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEI--EPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHHH
Confidence 3455667777777777777777665 5655444443
No 411
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=53.14 E-value=1.1e+02 Score=30.88 Aligned_cols=90 Identities=7% Similarity=0.035 Sum_probs=55.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHhhC--CCCCCHhhHHHHHHHHHHcCCHh------HHHHHHHHHHhcCCCCCCCHhHHH
Q 010830 259 TFLITLIRGKQVDEALKFLRVMKGE--NCFPTLKFFSNALDILVKLNDST------HAVQLWDIMVGIGFNLMPNLIMYN 330 (499)
Q Consensus 259 ~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~~ 330 (499)
.|..+|..+|++..+.++++..... |-+.-...||..|+...+.|.++ .|.+.+++..- .-|..||.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~l-----n~d~~t~a 107 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARL-----NGDSLTYA 107 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhc-----CCcchHHH
Confidence 7888888889988888888887653 33333456777777788888653 34444444443 33777887
Q ss_pred HHHHHHHcCCChHHHHHHHHHHH
Q 010830 331 AVIGLLCNNDDVDNVFRFFDQMV 353 (499)
Q Consensus 331 ~li~~~~~~~~~~~a~~~~~~m~ 353 (499)
.|+.+-...-.-.-..-++.++.
T Consensus 108 ll~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 108 LLCQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHHHhhcChHhHHhccHHHHHHH
Confidence 77776554333333333444443
No 412
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=52.59 E-value=68 Score=31.84 Aligned_cols=59 Identities=15% Similarity=0.055 Sum_probs=28.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 010830 259 TFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI 318 (499)
Q Consensus 259 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 318 (499)
.|.+.+.+.|...+|..++.+..... ....-++..+-+++....+++.|++.|++..+.
T Consensus 647 ~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 647 NLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 34444445555555555554443332 122334444555555555555555555555544
No 413
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=52.51 E-value=1.9e+02 Score=26.58 Aligned_cols=96 Identities=11% Similarity=0.089 Sum_probs=55.9
Q ss_pred HhHHHHHHHHHHHCCC----CCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHH
Q 010830 377 VHEVEKFFHEMIKNEW----QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 452 (499)
Q Consensus 377 ~~~a~~~~~~~~~~~~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 452 (499)
.++|.+.|+.....+. ..+......++....+.|+.+.-..+++...+ ..+...-..++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 4566777777776421 34555566666777777776665555555544 2355666777888888888888888
Q ss_pred HHHHHHHcC-CccCHHHHHHHHHHHH
Q 010830 453 FAEEMLNRR-ILIYEVTMHKLKKAFY 477 (499)
Q Consensus 453 ~~~~m~~~~-~~p~~~~~~~ll~~~~ 477 (499)
+++.....+ +.+.. ...++.++.
T Consensus 223 ~l~~~l~~~~v~~~d--~~~~~~~~~ 246 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQD--IRYVLAGLA 246 (324)
T ss_dssp HHHHHHCTSTS-TTT--HHHHHHHHH
T ss_pred HHHHHcCCcccccHH--HHHHHHHHh
Confidence 888777754 44332 344444554
No 414
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=52.32 E-value=60 Score=30.97 Aligned_cols=62 Identities=15% Similarity=0.085 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhHc-----cCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHH
Q 010830 219 SFAILLEGWEKEGNVEEANKTFGEMVER-----FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280 (499)
Q Consensus 219 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m 280 (499)
+...|++.++-.||+..|+++++.+.-. ..+.+..+.++..+.-+|...+++.+|.+.|...
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455777888888888888888766321 1222334556777777888888888888888764
No 415
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=52.20 E-value=1.5e+02 Score=30.09 Aligned_cols=93 Identities=19% Similarity=0.170 Sum_probs=65.0
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChH------HHHHHHHHHHHCCCCCCHHhHHHH
Q 010830 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD------NVFRFFDQMVFHGAFPDSLTYNMI 367 (499)
Q Consensus 294 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~------~a~~~~~~m~~~g~~p~~~~~~~l 367 (499)
+++.+|...|++..+.++++........-+.=...||..|+...+.|.++ .|.+++++.. +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 79999999999999999999988654212334567888899999999764 3344444333 55688889888
Q ss_pred HHHHHhcCCHhHHHHHHHHHHH
Q 010830 368 FECLIKNKRVHEVEKFFHEMIK 389 (499)
Q Consensus 368 l~~~~~~g~~~~a~~~~~~~~~ 389 (499)
+.+-...-+-....-++.+.+.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 8776654444445556666655
No 416
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=52.09 E-value=75 Score=24.52 Aligned_cols=42 Identities=14% Similarity=0.162 Sum_probs=24.7
Q ss_pred HHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHH
Q 010830 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278 (499)
Q Consensus 236 a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~ 278 (499)
..++|..|..+ ++--.-+.-|......+-..|++.+|.++|+
T Consensus 82 p~~if~~L~~~-~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSK-GIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHC-CcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45566666554 5544444555566666666666666666654
No 417
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=51.87 E-value=1.1e+02 Score=23.63 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=29.4
Q ss_pred HHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHH
Q 010830 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279 (499)
Q Consensus 235 ~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~ 279 (499)
.+.++|..|..+ |+--..+.-|......+.+.|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~-~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSK-GIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHH-TTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 677777777665 55555566677777777777777777777654
No 418
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=51.55 E-value=32 Score=17.42 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=12.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 010830 150 FASIFDSYCGAGKYDEAVMSFDVMS 174 (499)
Q Consensus 150 ~~~li~~~~~~g~~~~A~~~~~~m~ 174 (499)
|..+...+...|+++.|...|+...
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3344444555555555555554443
No 419
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=51.24 E-value=1e+02 Score=25.32 Aligned_cols=62 Identities=11% Similarity=0.050 Sum_probs=40.1
Q ss_pred HHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHH
Q 010830 387 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 449 (499)
Q Consensus 387 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 449 (499)
+.+.|++.+..- ..++..+...++.-.|.++++.+.+.+...+..|..-.|..+...|-..+
T Consensus 17 L~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 17 CAQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 445577665443 34555555556667788888888877766666665556777777776544
No 420
>PHA02875 ankyrin repeat protein; Provisional
Probab=50.73 E-value=2.4e+02 Score=27.15 Aligned_cols=15 Identities=20% Similarity=0.350 Sum_probs=6.3
Q ss_pred HHHhcCCHHHHHHHH
Q 010830 226 GWEKEGNVEEANKTF 240 (499)
Q Consensus 226 ~~~~~g~~~~a~~~~ 240 (499)
..++.|+.+.+..++
T Consensus 74 ~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 74 DAVEEGDVKAVEELL 88 (413)
T ss_pred HHHHCCCHHHHHHHH
Confidence 333445544443333
No 421
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=50.64 E-value=20 Score=27.76 Aligned_cols=19 Identities=16% Similarity=0.321 Sum_probs=9.5
Q ss_pred HhHHHHHHHHHHHCCCCCC
Q 010830 377 VHEVEKFFHEMIKNEWQPT 395 (499)
Q Consensus 377 ~~~a~~~~~~~~~~~~~p~ 395 (499)
-..|..+|+.|++.|-+||
T Consensus 111 k~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 111 KTDAYAVFRKMLERGNPPD 129 (140)
T ss_pred CCcHHHHHHHHHhCCCCCc
Confidence 3445555555555554444
No 422
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=50.32 E-value=1.3e+02 Score=23.97 Aligned_cols=46 Identities=11% Similarity=0.146 Sum_probs=21.2
Q ss_pred hHHHHHHHHhccCC-hhHHHHHHHHHHHCCCCChHHHHHHHHHHHHh
Q 010830 398 NCATAITMLLDADE-PEIAIEIWNYILENGILPLEASANELLVGLRN 443 (499)
Q Consensus 398 ~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 443 (499)
.|.+++.+.+.... ---+..+|+-|.+.+.+++..-|..++.++.+
T Consensus 81 sf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 81 SFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred hHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 44455554443333 22344444444444445555555555554443
No 423
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=50.05 E-value=83 Score=23.51 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=17.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 010830 150 FASIFDSYCGAGKYDEAVMSFDVMSM 175 (499)
Q Consensus 150 ~~~li~~~~~~g~~~~A~~~~~~m~~ 175 (499)
|..|+..|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 66666666666666666666666654
No 424
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=50.01 E-value=2.4e+02 Score=29.00 Aligned_cols=35 Identities=14% Similarity=0.249 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC
Q 010830 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD 181 (499)
Q Consensus 146 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 181 (499)
+......++.++.. |+...++++++++...|..+.
T Consensus 250 ~~~~i~~LldaL~~-~d~~~al~~l~~l~~~G~~~~ 284 (618)
T PRK14951 250 DRSHVFRLIDALAQ-GDGRTVVETADELRLNGLSAA 284 (618)
T ss_pred CHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHH
Confidence 34444555555554 678888888888887765543
No 425
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=49.45 E-value=1.8e+02 Score=25.46 Aligned_cols=23 Identities=13% Similarity=0.190 Sum_probs=12.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhH
Q 010830 223 LLEGWEKEGNVEEANKTFGEMVE 245 (499)
Q Consensus 223 ll~~~~~~g~~~~a~~~~~~~~~ 245 (499)
+++.+-++|+++++.+.+.++.+
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~ 29 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIE 29 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHc
Confidence 34444455555555555555554
No 426
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=49.42 E-value=37 Score=22.58 Aligned_cols=49 Identities=14% Similarity=0.142 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Q 010830 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCG 159 (499)
Q Consensus 111 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~ 159 (499)
|....++-++..++...-.+.++..+++..+.|..+..+|.--++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSIDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3344555566666666566666666666666665555555555554444
No 427
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=49.34 E-value=72 Score=23.83 Aligned_cols=33 Identities=12% Similarity=0.223 Sum_probs=24.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHH
Q 010830 119 MVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFA 151 (499)
Q Consensus 119 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 151 (499)
+|+.+.++...++|+++++.|.+.|-.+...-+
T Consensus 67 ViD~lrRC~T~EEALEVInylek~GEIt~e~A~ 99 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRGEITPEEAK 99 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 456677888888888888888888865544333
No 428
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=49.21 E-value=96 Score=22.22 Aligned_cols=35 Identities=23% Similarity=0.259 Sum_probs=21.6
Q ss_pred CCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 010830 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284 (499)
Q Consensus 250 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 284 (499)
.|+|...-..+...+...|++++|++.+-++.+..
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 56566666667777777777777777766665543
No 429
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=49.16 E-value=1.8e+02 Score=25.37 Aligned_cols=90 Identities=12% Similarity=0.135 Sum_probs=48.0
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHC-C-----------CCCChhhHHHHHHHHhccCChhH
Q 010830 347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN-E-----------WQPTPLNCATAITMLLDADEPEI 414 (499)
Q Consensus 347 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~-----------~~p~~~~~~~li~~~~~~g~~~~ 414 (499)
++.+-....++.-+.....+++ +...|+..+|+..++.-... | -.|.+.....++..|. .+++++
T Consensus 180 Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~ 256 (333)
T KOG0991|consen 180 RLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDE 256 (333)
T ss_pred HHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHH
Confidence 3333333344444443333333 34456666666555543321 1 1355566666666654 367888
Q ss_pred HHHHHHHHHHCCCCChHHHHHHHHHH
Q 010830 415 AIEIWNYILENGILPLEASANELLVG 440 (499)
Q Consensus 415 a~~~~~~m~~~~~~p~~~~~~~ll~~ 440 (499)
|.+++.++-+.|+.|... .+.+.+.
T Consensus 257 A~~il~~lw~lgysp~Di-i~~~FRv 281 (333)
T KOG0991|consen 257 ALKILAELWKLGYSPEDI-ITTLFRV 281 (333)
T ss_pred HHHHHHHHHHcCCCHHHH-HHHHHHH
Confidence 888888887888776543 3334443
No 430
>PRK09857 putative transposase; Provisional
Probab=48.20 E-value=1.5e+02 Score=26.92 Aligned_cols=65 Identities=15% Similarity=0.120 Sum_probs=34.4
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccC
Q 010830 400 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 465 (499)
Q Consensus 400 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~ 465 (499)
..++......++.++..++++.+.+. ........-++..-+.+.|.-+++.++.++|...|+..+
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 34444444455555555555555443 122222333444555555655667777777877776544
No 431
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=47.91 E-value=1.1e+02 Score=27.86 Aligned_cols=70 Identities=14% Similarity=0.175 Sum_probs=47.0
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHh----------CCChHHH
Q 010830 381 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN----------LGRLSDV 450 (499)
Q Consensus 381 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----------~g~~~~a 450 (499)
.++++.+.+.++.|.-..+..+.-.+.+.=.+..+..+|+.+.... .-|..|+..||. .|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-----~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-----QRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-----hhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 4677777777888888887777777777777788888888776522 225555555543 3666655
Q ss_pred HHHHH
Q 010830 451 RRFAE 455 (499)
Q Consensus 451 ~~~~~ 455 (499)
.++++
T Consensus 338 mkLLQ 342 (370)
T KOG4567|consen 338 MKLLQ 342 (370)
T ss_pred HHHHh
Confidence 55554
No 432
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=47.88 E-value=2.2e+02 Score=26.16 Aligned_cols=122 Identities=11% Similarity=0.044 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHH
Q 010830 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312 (499)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 312 (499)
+.+|+++|++..+. ...+|+ ++.+.+.--...+.+.+.+...-..+-..+.-+..+.|+..+|.+.+
T Consensus 232 i~~AE~l~k~ALka------~e~~yr-------~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~ 298 (556)
T KOG3807|consen 232 IVDAERLFKQALKA------GETIYR-------QSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIM 298 (556)
T ss_pred HHHHHHHHHHHHHH------HHHHHh-------hHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHH
Q ss_pred HHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCH-HhHHHHH
Q 010830 313 DIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS-LTYNMIF 368 (499)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll 368 (499)
+++.+.-. +..-......+|.++....-+.++..++-+..+-..+-+. ..|++.+
T Consensus 299 RDL~ke~p-l~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTaAL 354 (556)
T KOG3807|consen 299 RDLMKEFP-LLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTAAL 354 (556)
T ss_pred HHHhhhcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHHHH
No 433
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=47.62 E-value=2.8e+02 Score=28.92 Aligned_cols=33 Identities=9% Similarity=0.025 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC
Q 010830 148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD 181 (499)
Q Consensus 148 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 181 (499)
.....|+.++.. ++...++.++++|...|+.+.
T Consensus 247 ~~If~LldAL~~-~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 247 QYLYELLTGIIN-QDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCHH
Confidence 344455555544 677777777777777766544
No 434
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=47.60 E-value=1.4e+02 Score=26.29 Aligned_cols=61 Identities=16% Similarity=0.068 Sum_probs=38.1
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHhh----CCC-CCCHhhHHHHHHHHHHcCCHhHHHHHHHHHH
Q 010830 256 AYETFLITLIRGKQVDEALKFLRVMKG----ENC-FPTLKFFSNALDILVKLNDSTHAVQLWDIMV 316 (499)
Q Consensus 256 ~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 316 (499)
..-.+...|.+.|++++|.++|+.+.. .|. .+...+...+..++.+.|+.+....+--++.
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 334566677777777777777776532 332 2334455566777777788777776655443
No 435
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=46.97 E-value=92 Score=24.26 Aligned_cols=45 Identities=9% Similarity=0.095 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc-hHHHHHHHHHH
Q 010830 449 DVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS-MRDIFDSLERR 493 (499)
Q Consensus 449 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~-a~~~~~~~~~~ 493 (499)
...+.++...+.-..-....|..++..+.+.|+. +..+|+.+.+.
T Consensus 73 ~~~~~l~~~~~~E~~e~~~~y~~~~~~A~~e~d~~~~~~f~~i~~~ 118 (134)
T cd01041 73 DTLENLKAAIAGETYEYTEMYPEFAEVAEEEGFKEAARSFEAIAEA 118 (134)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444332211234555555555555555 44555544443
No 436
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=46.82 E-value=2.1e+02 Score=25.49 Aligned_cols=21 Identities=24% Similarity=0.180 Sum_probs=9.6
Q ss_pred HhHHHHHHHHHhcCCHhHHHH
Q 010830 362 LTYNMIFECLIKNKRVHEVEK 382 (499)
Q Consensus 362 ~~~~~ll~~~~~~g~~~~a~~ 382 (499)
.....+...|.+.|++.+|+.
T Consensus 91 ~LH~~~a~~~~~e~~~~~A~~ 111 (260)
T PF04190_consen 91 ELHHLLAEKLWKEGNYYEAER 111 (260)
T ss_dssp HHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHH
Confidence 334444445555555555443
No 437
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=46.33 E-value=42 Score=22.33 Aligned_cols=51 Identities=18% Similarity=0.146 Sum_probs=33.8
Q ss_pred CChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhc
Q 010830 428 LPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 479 (499)
Q Consensus 428 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 479 (499)
.|....++.++..+++..-.++++..+.++.+.|. .+..+|-.-++.+++.
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 34556777777777777777888888888887775 3555555555555553
No 438
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=46.33 E-value=2e+02 Score=25.10 Aligned_cols=137 Identities=8% Similarity=0.027 Sum_probs=79.3
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccC
Q 010830 331 AVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410 (499)
Q Consensus 331 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 410 (499)
..+..|.+.-++.-|-...++..+ ...+-.+++ -|.+..+.+--.++.+-....++.-+......++ +...|
T Consensus 135 RtMEiyS~ttRFalaCN~s~KIiE-----PIQSRCAiL-Rysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~G 206 (333)
T KOG0991|consen 135 RTMEIYSNTTRFALACNQSEKIIE-----PIQSRCAIL-RYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQG 206 (333)
T ss_pred HHHHHHcccchhhhhhcchhhhhh-----hHHhhhHhh-hhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccc
Confidence 334555555555555555555543 122222232 3455555444444444444445554444444443 45678
Q ss_pred ChhHHHHHHHHHHH-CC-----------CCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHH
Q 010830 411 EPEIAIEIWNYILE-NG-----------ILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFY 477 (499)
Q Consensus 411 ~~~~a~~~~~~m~~-~~-----------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 477 (499)
+..+|...++.-.. .| -.|.+.....++..|. .+++++|.+++.++-+.|+.|.. ..+.+++.+-
T Consensus 207 DMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~D-ii~~~FRv~K 283 (333)
T KOG0991|consen 207 DMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPED-IITTLFRVVK 283 (333)
T ss_pred hHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHH
Confidence 88887777665432 11 2466777777777654 58899999999999999998764 4444555443
No 439
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=46.24 E-value=2.3e+02 Score=25.63 Aligned_cols=85 Identities=9% Similarity=-0.055 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHhc----cCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCC---------
Q 010830 379 EVEKFFHEMIKNEWQPTPLNCATAITMLLD----ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG--------- 445 (499)
Q Consensus 379 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g--------- 445 (499)
.|...+.++...+ +......+...|.. ..+.++|...|+...+.|- ....|+. ..+...|
T Consensus 173 ~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~--~~~~~~g~g~~~~~~~ 245 (292)
T COG0790 173 KALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNL--GLMYLNGEGVKKAAFL 245 (292)
T ss_pred hHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHH--HHHHhcCCCchhhhhc
Confidence 5666666666655 22333333333322 2366777777777777664 2222221 1333333
Q ss_pred ------ChHHHHHHHHHHHHcCCccCHHHHH
Q 010830 446 ------RLSDVRRFAEEMLNRRILIYEVTMH 470 (499)
Q Consensus 446 ------~~~~a~~~~~~m~~~~~~p~~~~~~ 470 (499)
+...|...+......+.........
T Consensus 246 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 246 TAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred ccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 5556666666666555544444444
No 440
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=46.15 E-value=2.4e+02 Score=25.95 Aligned_cols=134 Identities=15% Similarity=0.128 Sum_probs=70.3
Q ss_pred CCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHc---cCCCCc
Q 010830 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI--VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER---FEWNPE 252 (499)
Q Consensus 178 ~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~p~ 252 (499)
++.|..-++.+..+= . ..+++-.+..+...+. -.--...+......|++.||.+.|++.+.+..++ .|.+.
T Consensus 66 i~~D~~~l~~m~~~n--e-eki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~ki- 141 (393)
T KOG0687|consen 66 IKLDQDLLNSMKKAN--E-EKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKI- 141 (393)
T ss_pred eeccHHHHHHHHHhh--H-HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccch-
Confidence 445555555544431 1 3333333334444332 2222345666778899999999999888876554 35555
Q ss_pred hHHhHHHHH-HHHhcCCCHHHHHHHHHHHhhCCCCCCH----hhHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 010830 253 HVLAYETFL-ITLIRGKQVDEALKFLRVMKGENCFPTL----KFFSNALDILVKLNDSTHAVQLWDIMVG 317 (499)
Q Consensus 253 ~~~~~~~li-~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~ 317 (499)
|+.-+.+-+ -.|....-+.+-++..+.+.+.|...+. .+|..+- |....++.+|-.+|-+...
T Consensus 142 DVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 142 DVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 443222222 2233333345555555666666654432 2343332 2234577888888776654
No 441
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=45.91 E-value=1.3e+02 Score=22.57 Aligned_cols=27 Identities=11% Similarity=0.108 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHH
Q 010830 433 SANELLVGLRNLGRLSDVRRFAEEMLN 459 (499)
Q Consensus 433 ~~~~ll~~~~~~g~~~~a~~~~~~m~~ 459 (499)
-|..|+..|...|..++|.+++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477788888888888888888887776
No 442
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=45.85 E-value=1.2e+02 Score=22.51 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=11.1
Q ss_pred HHHHHHhcCCHhHHHHHHHHH
Q 010830 367 IFECLIKNKRVHEVEKFFHEM 387 (499)
Q Consensus 367 ll~~~~~~g~~~~a~~~~~~~ 387 (499)
++..|...|+.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 444555556666666655554
No 443
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.66 E-value=2.7e+02 Score=26.34 Aligned_cols=36 Identities=14% Similarity=0.160 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC
Q 010830 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD 181 (499)
Q Consensus 145 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 181 (499)
++......++.+... ++...+..+++.+.+.|..|.
T Consensus 244 ~~~~~i~~l~~ai~~-~~~~~~~~~~~~l~~~g~~~~ 279 (363)
T PRK14961 244 LNEKQSFLLTDALLK-KDSKKTMLLLNKISSIGIEWE 279 (363)
T ss_pred CCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHH
Confidence 455556666666544 788999999999988775554
No 444
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.45 E-value=3.2e+02 Score=27.37 Aligned_cols=38 Identities=11% Similarity=0.111 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCH
Q 010830 144 VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDV 182 (499)
Q Consensus 144 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 182 (499)
..+......++.++.. |+.+.+++++++|...|..|..
T Consensus 243 ~~~~~~i~~ll~al~~-~d~~~~l~~~~~l~~~g~~~~~ 280 (509)
T PRK14958 243 TIEPLLLFDILEALAA-KAGDRLLGCVTRLVEQGVDFSN 280 (509)
T ss_pred CCCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHHH
Confidence 3455566666666555 8899999999999999877753
No 445
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=45.34 E-value=1.4e+02 Score=27.21 Aligned_cols=56 Identities=16% Similarity=0.386 Sum_probs=31.5
Q ss_pred HHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 010830 310 QLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI 372 (499)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 372 (499)
++|+.+...+ +.|.-..+.-+.-.+.+.=.+.+++.+|+.+.. |..-|..++..||
T Consensus 264 EL~~~L~~~~--i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 264 ELWRHLEEKE--IHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHhcC--CCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHH
Confidence 4555555555 566666666555555555566666666666654 3333555555554
No 446
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.06 E-value=18 Score=33.09 Aligned_cols=92 Identities=11% Similarity=-0.039 Sum_probs=63.2
Q ss_pred hcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 010830 91 SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSF 170 (499)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 170 (499)
..|..+.|++.|.......++....|..-.+++.+.++...|++=++...+.+..+..-|-.--.+..-.|++++|...|
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 35667777777776666677777777777777777777777777777777666555555555555556667777777777
Q ss_pred HHHHhCCCCcCH
Q 010830 171 DVMSMHGVEQDV 182 (499)
Q Consensus 171 ~~m~~~g~~p~~ 182 (499)
....+.+..+..
T Consensus 206 ~~a~kld~dE~~ 217 (377)
T KOG1308|consen 206 ALACKLDYDEAN 217 (377)
T ss_pred HHHHhccccHHH
Confidence 777666554443
No 447
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=44.84 E-value=63 Score=24.31 Aligned_cols=47 Identities=23% Similarity=0.227 Sum_probs=26.9
Q ss_pred HHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChH
Q 010830 402 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448 (499)
Q Consensus 402 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 448 (499)
++..+...+..-.|.++++.+.+.+...+..|..-.++.+...|-..
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 44444444555566677777766655555555555556666666543
No 448
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=44.59 E-value=1.1e+02 Score=21.72 Aligned_cols=14 Identities=29% Similarity=0.423 Sum_probs=6.3
Q ss_pred CCHHHHHHHHHHHh
Q 010830 231 GNVEEANKTFGEMV 244 (499)
Q Consensus 231 g~~~~a~~~~~~~~ 244 (499)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444443
No 449
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=44.48 E-value=76 Score=20.84 Aligned_cols=17 Identities=18% Similarity=0.290 Sum_probs=8.0
Q ss_pred hcCCHhHHHHHHHHHHH
Q 010830 373 KNKRVHEVEKFFHEMIK 389 (499)
Q Consensus 373 ~~g~~~~a~~~~~~~~~ 389 (499)
..|++-+|-++++.+-.
T Consensus 11 n~g~f~EaHEvlE~~W~ 27 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWK 27 (62)
T ss_dssp HTT-HHHHHHHHHHHCC
T ss_pred cCCCHHHhHHHHHHHHH
Confidence 44555555555555443
No 450
>PRK09462 fur ferric uptake regulator; Provisional
Probab=44.23 E-value=1.6e+02 Score=23.45 Aligned_cols=62 Identities=13% Similarity=0.134 Sum_probs=35.5
Q ss_pred HHHHCCCCCChhhHHHHHHHHhcc-CChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChH
Q 010830 386 EMIKNEWQPTPLNCATAITMLLDA-DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 448 (499)
Q Consensus 386 ~~~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 448 (499)
.+.+.|++.+.. -..++..+... +..-.|.++++.+.+.+...+..|..-.+..+...|-..
T Consensus 7 ~l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 7 ALKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 344556665543 23444444443 456677777777777665555555555566666666543
No 451
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=43.95 E-value=4.4e+02 Score=28.33 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=16.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 010830 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVE 179 (499)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~m~~~g~~ 179 (499)
.++++.. .++...++.+++++.+.|..
T Consensus 253 ~lidAL~-~~D~a~al~~l~~Li~~G~d 279 (824)
T PRK07764 253 EAVDALA-AGDGAALFGTVDRVIEAGHD 279 (824)
T ss_pred HHHHHHH-cCCHHHHHHHHHHHHHcCCC
Confidence 3444444 46677777777777766654
No 452
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.76 E-value=1.5e+02 Score=31.28 Aligned_cols=132 Identities=17% Similarity=0.079 Sum_probs=77.0
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHH
Q 010830 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEE 235 (499)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 235 (499)
.+...|+++.|++.-..+ -|..+|..|.....+. |+.+-|+..|++.+. |..|--.|.-.|+.++
T Consensus 652 LaLe~gnle~ale~akkl------dd~d~w~rLge~Al~q-gn~~IaEm~yQ~~kn--------fekLsfLYliTgn~eK 716 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKL------DDKDVWERLGEEALRQ-GNHQIAEMCYQRTKN--------FEKLSFLYLITGNLEK 716 (1202)
T ss_pred eehhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHh-cchHHHHHHHHHhhh--------hhheeEEEEEeCCHHH
Confidence 455667777777665543 3566777888777777 888888888877654 3334445556677777
Q ss_pred HHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHH
Q 010830 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315 (499)
Q Consensus 236 a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 315 (499)
-.++.+....+ - |. ........-.|+.++-.++++. .|..| ..|. .....|.-++|.++.++.
T Consensus 717 L~Km~~iae~r----~-D~---~~~~qnalYl~dv~ervkIl~n---~g~~~--layl----ta~~~G~~~~ae~l~ee~ 779 (1202)
T KOG0292|consen 717 LSKMMKIAEIR----N-DA---TGQFQNALYLGDVKERVKILEN---GGQLP--LAYL----TAAAHGLEDQAEKLGEEL 779 (1202)
T ss_pred HHHHHHHHHhh----h-hh---HHHHHHHHHhccHHHHHHHHHh---cCccc--HHHH----HHhhcCcHHHHHHHHHhh
Confidence 66665555433 1 21 1122222234666666665543 22222 1121 123457778888888888
Q ss_pred HhcC
Q 010830 316 VGIG 319 (499)
Q Consensus 316 ~~~~ 319 (499)
.+.+
T Consensus 780 ~~~~ 783 (1202)
T KOG0292|consen 780 EKQV 783 (1202)
T ss_pred cccc
Confidence 7754
No 453
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=43.66 E-value=2e+02 Score=24.86 Aligned_cols=97 Identities=11% Similarity=0.031 Sum_probs=48.9
Q ss_pred CCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC---CHHhH--HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCh
Q 010830 322 LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFP---DSLTY--NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 396 (499)
Q Consensus 322 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~--~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 396 (499)
+.+...-+|.||--|.-...+.+|-+.|..- .|+.| |..++ ..-|......|++++|.+....+...-+.-|.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e--~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKE--SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccc--cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 4455666666665555555555555555432 23433 22222 34455667778888887777766443333333
Q ss_pred hhHHHHHH----HHhccCChhHHHHHHH
Q 010830 397 LNCATAIT----MLLDADEPEIAIEIWN 420 (499)
Q Consensus 397 ~~~~~li~----~~~~~g~~~~a~~~~~ 420 (499)
..+-.|.. -..+.|..++|.++.+
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q 127 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQ 127 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 22222111 1234455555555554
No 454
>PLN03025 replication factor C subunit; Provisional
Probab=43.64 E-value=2.7e+02 Score=25.73 Aligned_cols=31 Identities=6% Similarity=0.111 Sum_probs=20.7
Q ss_pred HhcCCCCCHHHHHHHHHhhcCCchhHHHHHH
Q 010830 73 ACTGIIPTPDLVHEVLQLSYDSPSSAVDFFR 103 (499)
Q Consensus 73 ~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~ 103 (499)
.+.|+..++..+..++..+.|+...++..++
T Consensus 172 ~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq 202 (319)
T PLN03025 172 EAEKVPYVPEGLEAIIFTADGDMRQALNNLQ 202 (319)
T ss_pred HHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3456666777777777766777776666665
No 455
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=43.46 E-value=92 Score=23.31 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=29.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 010830 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC 193 (499)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 193 (499)
++|+.+.++...++|+++.+.|.++| ..+...-+.|-..+.
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L~ 106 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSILV 106 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 46777888888999999999998888 555555555544443
No 456
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=43.30 E-value=1e+02 Score=23.76 Aligned_cols=40 Identities=13% Similarity=0.167 Sum_probs=19.6
Q ss_pred HHHHHHHHHhCCC--CCHHHHHHHHHHHHhcCChhHHHHHHH
Q 010830 132 MWNAVRVMKEDGV--LSLPTFASIFDSYCGAGKYDEAVMSFD 171 (499)
Q Consensus 132 a~~~~~~m~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~ 171 (499)
..++|..|..+++ --...|......+-..|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3445555555553 223344444455555555555555543
No 457
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=42.94 E-value=4.4e+02 Score=27.98 Aligned_cols=33 Identities=15% Similarity=0.073 Sum_probs=23.9
Q ss_pred HhcCCCCCHHHHHHHHHhhcCCchhHHHHHHHh
Q 010830 73 ACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA 105 (499)
Q Consensus 73 ~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~ 105 (499)
...|+..+...+..+.+.+.|+...|+.+++.+
T Consensus 192 ~~EgI~id~eAL~lIA~~A~GsmRdALsLLdQA 224 (830)
T PRK07003 192 GEERIAFEPQALRLLARAAQGSMRDALSLTDQA 224 (830)
T ss_pred HHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 345677777777777777788888888876643
No 458
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=42.93 E-value=1.4e+02 Score=22.24 Aligned_cols=66 Identities=8% Similarity=0.052 Sum_probs=35.5
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhC--CChHHHHHHHHHHHHcCCccCHH
Q 010830 400 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL--GRLSDVRRFAEEMLNRRILIYEV 467 (499)
Q Consensus 400 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--g~~~~a~~~~~~m~~~~~~p~~~ 467 (499)
..++..|...|+.++|...++++.-.. -.......++...... ..-+.+..++..+.+.+..+...
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~--~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~~~ 73 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPS--QHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLISKEQ 73 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GG--GHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-HHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCc--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 345666777789998888887753221 1223334444444433 22344566777777776554433
No 459
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=42.90 E-value=2.6e+02 Score=25.42 Aligned_cols=53 Identities=15% Similarity=0.153 Sum_probs=35.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhh
Q 010830 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282 (499)
Q Consensus 222 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 282 (499)
.++..+.+.+++....+.+..+. ....-...+..+...|++..|++++.+..+
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~--------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIK--------TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 35555666666666666666663 333455667777888888888888877654
No 460
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=42.88 E-value=2e+02 Score=24.15 Aligned_cols=55 Identities=7% Similarity=0.014 Sum_probs=28.6
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHCCCC--------------CCHHhHHHHHHHHHhcCCHhHHHHHHH
Q 010830 331 AVIGLLCNNDDVDNVFRFFDQMVFHGAF--------------PDSLTYNMIFECLIKNKRVHEVEKFFH 385 (499)
Q Consensus 331 ~li~~~~~~~~~~~a~~~~~~m~~~g~~--------------p~~~~~~~ll~~~~~~g~~~~a~~~~~ 385 (499)
+++..|.+..++.+..++++.|.+..+. +.-...|.....|.+.|.+|.|..+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 3444555555666666666666542211 122234444555566666666665554
No 461
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=42.52 E-value=2.5e+02 Score=25.05 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=13.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHh
Q 010830 257 YETFLITLIRGKQVDEALKFLRVMK 281 (499)
Q Consensus 257 ~~~li~~~~~~~~~~~a~~~~~~m~ 281 (499)
...++..+.+.+....|+.+.+.+.
T Consensus 85 L~~iL~~lL~~~~~~~a~~i~~~y~ 109 (258)
T PF07064_consen 85 LHHILRHLLRRNLDEEALEIASKYR 109 (258)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHhc
Confidence 4445555555555555555555544
No 462
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=42.48 E-value=1.2e+02 Score=21.48 Aligned_cols=43 Identities=14% Similarity=0.035 Sum_probs=26.1
Q ss_pred HHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 010830 417 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459 (499)
Q Consensus 417 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 459 (499)
++|+-....|+..|..+|..+++.+.-.=-++...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 5555555566666666666666655555555556666666653
No 463
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=41.82 E-value=2.4e+02 Score=24.73 Aligned_cols=60 Identities=20% Similarity=0.118 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHH
Q 010830 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280 (499)
Q Consensus 218 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m 280 (499)
.-|+.-+..+.+..+++.+..--... ..+.|+.+-....+-.+......+++|+..+.+.
T Consensus 45 ~Y~tnralchlk~~~~~~v~~dcrra---lql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 45 SYYTNRALCHLKLKHWEPVEEDCRRA---LQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred hhhhhHHHHHHHhhhhhhhhhhHHHH---HhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 44455555566666666655544444 2445544444445555666666777777776665
No 464
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=41.80 E-value=3e+02 Score=25.75 Aligned_cols=28 Identities=18% Similarity=0.283 Sum_probs=18.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCc
Q 010830 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQ 180 (499)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p 180 (499)
.++.+.. .|+..+|.++++.+.+.|..|
T Consensus 249 ~l~~ai~-~~~~~~a~~~~~~l~~~~~~~ 276 (355)
T TIGR02397 249 ELLEAIL-NKDTAEALKILDEILESGVDP 276 (355)
T ss_pred HHHHHHH-cCCHHHHHHHHHHHHHcCCCH
Confidence 3444444 377888888888887766544
No 465
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=41.75 E-value=2.8e+02 Score=25.44 Aligned_cols=81 Identities=15% Similarity=0.108 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhhCCC----CCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHH
Q 010830 270 VDEALKFLRVMKGENC----FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345 (499)
Q Consensus 270 ~~~a~~~~~~m~~~~~----~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 345 (499)
.+.|.+.|+.....+. ..+...-..++....+.|..+.-..+++..... .+......++.+.+...+.+..
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~-----~~~~~k~~~l~aLa~~~d~~~~ 220 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS-----TSPEEKRRLLSALACSPDPELL 220 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT-----STHHHHHHHHHHHTT-S-HHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc-----CCHHHHHHHHHhhhccCCHHHH
Confidence 4555555655554311 223333444444445555544444444443322 2455555555555555555555
Q ss_pred HHHHHHHHHC
Q 010830 346 FRFFDQMVFH 355 (499)
Q Consensus 346 ~~~~~~m~~~ 355 (499)
.++++.....
T Consensus 221 ~~~l~~~l~~ 230 (324)
T PF11838_consen 221 KRLLDLLLSN 230 (324)
T ss_dssp HHHHHHHHCT
T ss_pred HHHHHHHcCC
Confidence 5555555553
No 466
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=40.88 E-value=59 Score=24.74 Aligned_cols=44 Identities=9% Similarity=0.027 Sum_probs=23.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcc
Q 010830 437 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 480 (499)
Q Consensus 437 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 480 (499)
++..+...+..-.|.++++.|.+.+...+..|.-.-|+.+.+.|
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 34444444455566666666666655555555555555555554
No 467
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=40.72 E-value=96 Score=21.10 Aligned_cols=31 Identities=13% Similarity=0.011 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Q 010830 129 FEQMWNAVRVMKEDGVLSLPTFASIFDSYCG 159 (499)
Q Consensus 129 ~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~ 159 (499)
.+.|..++..++....-++..||++...+.+
T Consensus 13 tEmA~~mL~DLr~dekRsPQLYnAI~k~L~R 43 (82)
T PF11123_consen 13 TEMAQQMLADLRDDEKRSPQLYNAIGKLLDR 43 (82)
T ss_pred HHHHHHHHHHhcchhhcChHHHHHHHHHHHH
Confidence 3445555555544444455555555554443
No 468
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=40.28 E-value=3.6e+02 Score=26.28 Aligned_cols=146 Identities=12% Similarity=0.124 Sum_probs=75.1
Q ss_pred CCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHC------CCCC---CHHhHHHHHHHH--
Q 010830 303 NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH------GAFP---DSLTYNMIFECL-- 371 (499)
Q Consensus 303 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p---~~~~~~~ll~~~-- 371 (499)
+.+++-.++++.+.+.| .+| ....-|++|.+.+++++|..-+++-.+. |++. ...+...++...
T Consensus 68 ~~~~e~i~lL~~l~~~g---~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~ 142 (480)
T TIGR01503 68 ALLDEHIELLRTLQEEG---GAD--FLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNL 142 (480)
T ss_pred CcHHHHHHHHHHHHHcc---CCC--ccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCC
Confidence 35677777778777775 233 4455678888888888888888776653 2211 112222333322
Q ss_pred ---HhcCCHhHHHHHHHHHHHCCCCCC---hhhHHHHHHHHhccCChhHHHHHHHHH-------HHCCCCChHHHHHHHH
Q 010830 372 ---IKNKRVHEVEKFFHEMIKNEWQPT---PLNCATAITMLLDADEPEIAIEIWNYI-------LENGILPLEASANELL 438 (499)
Q Consensus 372 ---~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m-------~~~~~~p~~~~~~~ll 438 (499)
.++|- ..+..+++-+...|+.-. ..+|+. -|++.=-++++..-|+.+ .+.|+..|..+|-.|.
T Consensus 143 PvQvRHGt-pDarlL~e~~~a~G~~a~EGG~ISYnl---PYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpLt 218 (480)
T TIGR01503 143 PLQIRHGT-PDARLLAEIILAGGFTSFEGGGISYNI---PYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPLT 218 (480)
T ss_pred CeeccCCC-CcHHHHHHHHHHcCCCccCCCcceecc---ccCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCCC
Confidence 22333 345666666666654322 233332 234444455555555433 3456665665555432
Q ss_pred HHHHhCCChHHHHHHHHHHH
Q 010830 439 VGLRNLGRLSDVRRFAEEML 458 (499)
Q Consensus 439 ~~~~~~g~~~~a~~~~~~m~ 458 (499)
..++= -...-|..+++-+.
T Consensus 219 gtLvP-Psisiav~ilE~Ll 237 (480)
T TIGR01503 219 GTLVP-PSISNAIGIIEGLL 237 (480)
T ss_pred CCccC-hHHHHHHHHHHHHH
Confidence 22211 12334555555544
No 469
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=40.28 E-value=55 Score=33.46 Aligned_cols=11 Identities=9% Similarity=-0.109 Sum_probs=5.4
Q ss_pred HHHHHHHHhcc
Q 010830 399 CATAITMLLDA 409 (499)
Q Consensus 399 ~~~li~~~~~~ 409 (499)
++-++.+|..+
T Consensus 719 f~~F~~~~k~~ 729 (830)
T KOG1923|consen 719 FVRFVRAYKMA 729 (830)
T ss_pred HHHHHHHHHhh
Confidence 44455555444
No 470
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.04 E-value=4e+02 Score=26.67 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC
Q 010830 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD 181 (499)
Q Consensus 146 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 181 (499)
.......++.++ ..+++++|+.+++++...|..|.
T Consensus 241 ~~~~if~Li~al-~~~d~~~Al~~l~~Ll~~G~~~~ 275 (504)
T PRK14963 241 PQERLRGIAAAL-AQGDAAEALSGAAQLYRDGFAAR 275 (504)
T ss_pred cHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHH
Confidence 444555566665 45888999999999988875544
No 471
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.58 E-value=4.6e+02 Score=27.26 Aligned_cols=31 Identities=16% Similarity=0.083 Sum_probs=20.9
Q ss_pred hcCCCCCHHHHHHHHHhhcCCchhHHHHHHH
Q 010830 74 CTGIIPTPDLVHEVLQLSYDSPSSAVDFFRW 104 (499)
Q Consensus 74 ~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~ 104 (499)
..|+..+...+..+...+.|++..|+.+++.
T Consensus 198 ~Egi~~d~eAL~~IA~~A~Gs~RdALsLLdQ 228 (700)
T PRK12323 198 EEGIAHEVNALRLLAQAAQGSMRDALSLTDQ 228 (700)
T ss_pred HcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4566666666666666777777777777654
No 472
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=39.45 E-value=1.1e+02 Score=21.35 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHH
Q 010830 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSL 188 (499)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 188 (499)
++++.+.++.--++|+++++.|.+.| ..+...-+.|
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG-Ei~~E~A~~L 71 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG-EITPEMAKAL 71 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHH
No 473
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=38.40 E-value=2.5e+02 Score=27.25 Aligned_cols=268 Identities=11% Similarity=0.025 Sum_probs=0.0
Q ss_pred HHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCC
Q 010830 189 LSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268 (499)
Q Consensus 189 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~ 268 (499)
+-+.+.. |.++-+..++++- ..+..+..|-.+=+.+.|-.|+++-...+++.= .+....|..-.+.|+-++.+..
T Consensus 88 LWaAsaA-GHl~vVk~L~~~g-a~VN~tT~TNStPLraACfDG~leivKyLvE~g---ad~~IanrhGhTcLmIa~ykGh 162 (615)
T KOG0508|consen 88 LWAASAA-GHLEVVKLLLRRG-ASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHG---ADPEIANRHGHTCLMIACYKGH 162 (615)
T ss_pred hhHHhcc-CcHHHHHHHHHhc-CccccccccCCccHHHHHhcchhHHHHHHHHcC---CCCcccccCCCeeEEeeeccCc
Q ss_pred CHHHHHHHHHHHhhCCCCCCHhhH--HHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHH
Q 010830 269 QVDEALKFLRVMKGENCFPTLKFF--SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346 (499)
Q Consensus 269 ~~~~a~~~~~~m~~~~~~p~~~~~--~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 346 (499)
.++.+.+.+.|..++..++ ++.+.-|+..|.++ +.+.+++.|..+..|..-.+-|+.+ ...|..+...
T Consensus 163 -----~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vd----ivq~Ll~~ga~i~~d~~GmtPL~~A-a~tG~~~iVe 232 (615)
T KOG0508|consen 163 -----VDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVD----IVQLLLKHGAKIDVDGHGMTPLLLA-AVTGHTDIVE 232 (615)
T ss_pred -----hHHHHHHHHhCCCcchhcccCchHHHhhhhcccHH----HHHHHHhCCceeeecCCCCchHHHH-hhhcchHHHH
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHH-----hcCCHhHHHHHHHHHHHC-----CCCCChhhHHHHHHHHhccCChhHHH
Q 010830 347 RFFDQMVFHGAFPDSLTYNMIFECLI-----KNKRVHEVEKFFHEMIKN-----EWQPTPLNCATAITMLLDADEPEIAI 416 (499)
Q Consensus 347 ~~~~~m~~~g~~p~~~~~~~ll~~~~-----~~g~~~~a~~~~~~~~~~-----~~~p~~~~~~~li~~~~~~g~~~~a~ 416 (499)
.+.+ ..++...-..-+.... +..+.-.|.+.|.+..+. ...+...+. ..+.+|..........
T Consensus 233 ~L~~------~~~sr~~riealEllGat~~dkk~D~~~al~~w~~aMe~r~~~~e~~~e~e~~-~p~~ay~~~re~~~~~ 305 (615)
T KOG0508|consen 233 RLLQ------CETSRESRIEALELLGATYVDKKRDLLGALKYWRRAMEERESDGESILEKEPL-EPVLAYGYGREVNNRE 305 (615)
T ss_pred HHhc------CCcchhhHHHHHHHhcccccchhHHHHHHHHHHHHHHHhhhhccccccccCCC-CchhhhhhhhhcCCHH
Q ss_pred H----------------HHHHHHHCCCCChHHHHHHHHHH-HHhCCChHHHHHHHH---HHHHcCCccCHHHHHHHHHHH
Q 010830 417 E----------------IWNYILENGILPLEASANELLVG-LRNLGRLSDVRRFAE---EMLNRRILIYEVTMHKLKKAF 476 (499)
Q Consensus 417 ~----------------~~~~m~~~~~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~---~m~~~~~~p~~~~~~~ll~~~ 476 (499)
+ ++.+-+-.+-.||...|-..-.+ |+..|+++..+++|+ +|+++++.|-...-.+=+..|
T Consensus 306 elE~lv~D~d~~RmqaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsF 385 (615)
T KOG0508|consen 306 ELEELVEDPDEMRMQALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSF 385 (615)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHH
Q ss_pred Hh
Q 010830 477 YN 478 (499)
Q Consensus 477 ~~ 478 (499)
.+
T Consensus 386 ae 387 (615)
T KOG0508|consen 386 AE 387 (615)
T ss_pred HH
No 474
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=38.03 E-value=4.3e+02 Score=26.46 Aligned_cols=37 Identities=5% Similarity=0.099 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCH
Q 010830 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDV 182 (499)
Q Consensus 145 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 182 (499)
.+......|+.+..+ |+.+.|+.+++++...|..|..
T Consensus 256 ~~~~~if~L~~ai~~-~d~~~Al~~l~~L~~~g~~~~~ 292 (507)
T PRK06645 256 VDSSVIIEFVEYIIH-RETEKAINLINKLYGSSVNLEI 292 (507)
T ss_pred CCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHHH
Confidence 344455556665554 8999999999999998876653
No 475
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=37.92 E-value=1.3e+02 Score=20.54 Aligned_cols=37 Identities=16% Similarity=0.108 Sum_probs=20.7
Q ss_pred CCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcc
Q 010830 444 LGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 480 (499)
Q Consensus 444 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 480 (499)
.|+.+.+.+++++..+.|..|.......+..+..+-|
T Consensus 14 ~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 14 AGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp TT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4666666666666666666665555555555544444
No 476
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=37.83 E-value=5e+02 Score=27.18 Aligned_cols=86 Identities=3% Similarity=-0.034 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHH-HCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-CC------------ChhhHHHHHHHHh
Q 010830 342 VDNVFRFFDQMV-FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW-QP------------TPLNCATAITMLL 407 (499)
Q Consensus 342 ~~~a~~~~~~m~-~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~p------------~~~~~~~li~~~~ 407 (499)
.++....+.... ..|+..+......++... .|+...++.+++.+...|- .. +......|+.++.
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~ 257 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGII 257 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHH
Confidence 345555555444 457777777777776544 6899999999988776431 11 1112223344433
Q ss_pred ccCChhHHHHHHHHHHHCCCCCh
Q 010830 408 DADEPEIAIEIWNYILENGILPL 430 (499)
Q Consensus 408 ~~g~~~~a~~~~~~m~~~~~~p~ 430 (499)
. ++...++.+++++.+.|+.+.
T Consensus 258 ~-~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 258 N-QDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred c-CCHHHHHHHHHHHHHhCCCHH
Confidence 3 666777777777776665443
No 477
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=37.69 E-value=1.9e+02 Score=22.31 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHCCCCC-hHHHHHHHHHHHHhCCChHHHHHHHHH
Q 010830 414 IAIEIWNYILENGILP-LEASANELLVGLRNLGRLSDVRRFAEE 456 (499)
Q Consensus 414 ~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 456 (499)
.+.++|+.|...|+.- -...|......+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7778888887766543 335566666777778888888888765
No 478
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=37.53 E-value=3.8e+02 Score=25.80 Aligned_cols=89 Identities=10% Similarity=0.148 Sum_probs=51.3
Q ss_pred HCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHH---HH-----HHhCCChHHHHHHHHHHHHc
Q 010830 389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL---VG-----LRNLGRLSDVRRFAEEMLNR 460 (499)
Q Consensus 389 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll---~~-----~~~~g~~~~a~~~~~~m~~~ 460 (499)
...+.||.++.+.+...++..-..+-...+|+-..+.+ .|=.+.+-+|| ++ -.+...-++++++++.|...
T Consensus 176 tkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~ 254 (669)
T KOG3636|consen 176 TKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQ 254 (669)
T ss_pred ccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchh
Confidence 34677888887777777777777777777777777654 22222222222 11 12334567788888777654
Q ss_pred CCccCHHHHHHHHHHHHh
Q 010830 461 RILIYEVTMHKLKKAFYN 478 (499)
Q Consensus 461 ~~~p~~~~~~~ll~~~~~ 478 (499)
=-.-|..-+-.|...|+.
T Consensus 255 L~~eDvpDffsLAqyY~~ 272 (669)
T KOG3636|consen 255 LSVEDVPDFFSLAQYYSD 272 (669)
T ss_pred cccccchhHHHHHHHHhh
Confidence 222344455555555543
No 479
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=37.23 E-value=2.1e+02 Score=22.73 Aligned_cols=61 Identities=16% Similarity=0.171 Sum_probs=34.9
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcc
Q 010830 135 AVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195 (499)
Q Consensus 135 ~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 195 (499)
+.+.+.+.|.--..--..++..+...++.-.|.++++.+.+.+..-+..|.-.-+..+...
T Consensus 8 ~~~~lk~~glr~T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~ 68 (145)
T COG0735 8 AIERLKEAGLRLTPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEA 68 (145)
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHC
Confidence 3445555554333345566666776666677777777777765555444443344444444
No 480
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=37.23 E-value=98 Score=29.92 Aligned_cols=105 Identities=15% Similarity=0.033 Sum_probs=61.8
Q ss_pred HHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCH
Q 010830 191 AICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270 (499)
Q Consensus 191 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~ 270 (499)
.+... ++++.|..++.+..+-.+.+...|..-..++.+.+++..|+.=+....+. .|.....|-.-..++.+.+.+
T Consensus 13 ~~l~~-~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~---dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 13 EALKD-KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIEL---DPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hhccc-chHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhc---CchhhheeeeccHHHHhHHHH
Confidence 34444 77777777777776644445556666667777888888777766666553 343333333333444444556
Q ss_pred HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHH
Q 010830 271 DEALKFLRVMKGENCFPTLKFFSNALDILVK 301 (499)
Q Consensus 271 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 301 (499)
.+|+..|+.... +.|+..-+..++.-|-+
T Consensus 89 ~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 89 KKALLDLEKVKK--LAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHhhh--cCcCcHHHHHHHHHHHH
Confidence 666666555443 44666666666655544
No 481
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=37.20 E-value=1.3e+02 Score=20.43 Aligned_cols=28 Identities=11% Similarity=0.054 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 010830 199 TSRALEFLNRVKKIVDPDGDSFAILLEG 226 (499)
Q Consensus 199 ~~~a~~~~~~~~~~~~~~~~~~~~ll~~ 226 (499)
.+.|..++..++..-+.++..||++.+.
T Consensus 13 tEmA~~mL~DLr~dekRsPQLYnAI~k~ 40 (82)
T PF11123_consen 13 TEMAQQMLADLRDDEKRSPQLYNAIGKL 40 (82)
T ss_pred HHHHHHHHHHhcchhhcChHHHHHHHHH
Confidence 3344444444444334444444444433
No 482
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=36.63 E-value=1.1e+02 Score=19.31 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=17.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCccCHHHH
Q 010830 437 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTM 469 (499)
Q Consensus 437 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 469 (499)
+.-++.+.|++++|.+..+.+++. .|+..-.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa 37 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI--EPDNRQA 37 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHH
Confidence 445566777777777777777644 4554333
No 483
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=36.41 E-value=1.6e+02 Score=29.24 Aligned_cols=94 Identities=14% Similarity=0.012 Sum_probs=0.0
Q ss_pred HHHHHhccCChhHHHHHHHHHH-HCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcc
Q 010830 402 AITMLLDADEPEIAIEIWNYIL-ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 480 (499)
Q Consensus 402 li~~~~~~g~~~~a~~~~~~m~-~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 480 (499)
++.-|.+.+++++|..++..|. +.--.---...+.+++.+.+..--++.+..++.+...=..|....-......|...=
T Consensus 414 L~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d~V 493 (545)
T PF11768_consen 414 LISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRDPV 493 (545)
T ss_pred HHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHHHH
Q ss_pred cc-hHHHHHHHHHHHh
Q 010830 481 RS-MRDIFDSLERRCK 495 (499)
Q Consensus 481 ~~-a~~~~~~~~~~~~ 495 (499)
.. |+..|..+++..+
T Consensus 494 ~~~aRRfFhhLLR~~r 509 (545)
T PF11768_consen 494 SDLARRFFHHLLRYQR 509 (545)
T ss_pred HHHHHHHHHHHHHhhH
No 484
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=36.39 E-value=58 Score=18.08 Aligned_cols=21 Identities=14% Similarity=0.491 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHCCCCCCHHhH
Q 010830 342 VDNVFRFFDQMVFHGAFPDSLTY 364 (499)
Q Consensus 342 ~~~a~~~~~~m~~~g~~p~~~~~ 364 (499)
++.|..+|+.... +.|++.+|
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~W 23 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNW 23 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHH
Confidence 4555555555554 23554444
No 485
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.29 E-value=3.1e+02 Score=27.98 Aligned_cols=30 Identities=10% Similarity=0.041 Sum_probs=20.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCcC
Q 010830 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD 181 (499)
Q Consensus 151 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 181 (499)
..++. ....++...++++++++...|..|.
T Consensus 250 ~~lv~-al~~~d~~~al~~l~~l~~~g~d~~ 279 (584)
T PRK14952 250 DDAVD-ALAADDAAALFGAIESVIDAGHDPR 279 (584)
T ss_pred HHHHH-HHHcCCHHHHHHHHHHHHHcCCCHH
Confidence 34444 3445788888888888887765543
No 486
>PRK10941 hypothetical protein; Provisional
Probab=36.27 E-value=3.2e+02 Score=24.54 Aligned_cols=77 Identities=13% Similarity=0.086 Sum_probs=48.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC-CCCCCHhhHHHHHHHH
Q 010830 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-NCFPTLKFFSNALDIL 299 (499)
Q Consensus 221 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~ 299 (499)
+.+-.+|.+.++++.|+++.+.+. .+.|+++.-+.--.-.|.+.|.+..|..=++...+. .-.|+.......+...
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll---~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALL---QFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 345556777777777777777774 446766666666666677777777777766665432 2335555555555444
Q ss_pred H
Q 010830 300 V 300 (499)
Q Consensus 300 ~ 300 (499)
.
T Consensus 262 ~ 262 (269)
T PRK10941 262 E 262 (269)
T ss_pred h
Confidence 3
No 487
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=36.27 E-value=3.3e+02 Score=26.03 Aligned_cols=24 Identities=13% Similarity=0.148 Sum_probs=12.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHH
Q 010830 151 ASIFDSYCGAGKYDEAVMSFDVMS 174 (499)
Q Consensus 151 ~~li~~~~~~g~~~~A~~~~~~m~ 174 (499)
-.|++.+.-.|+.....+.++.|.
T Consensus 239 ~GLlR~H~lLgDhQat~q~idi~p 262 (525)
T KOG3677|consen 239 LGLLRMHILLGDHQATSQILDIMP 262 (525)
T ss_pred HHHHHHHHHhhhhHhhhhhhhcCc
Confidence 344455555555555455554443
No 488
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.03 E-value=28 Score=31.89 Aligned_cols=88 Identities=15% Similarity=0.026 Sum_probs=47.9
Q ss_pred CchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHH
Q 010830 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276 (499)
Q Consensus 197 ~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~ 276 (499)
|.++.|++.|.......++....|..-..++.+.+....|++=++... .+.|+....|-.--.+-...|+|.+|-..
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~---ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAI---EINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhh---ccCcccccccchhhHHHHHhhchHHHHHH
Confidence 555666665555555445555555555556666666666665555542 33554444444334444444666666666
Q ss_pred HHHHhhCCCCC
Q 010830 277 LRVMKGENCFP 287 (499)
Q Consensus 277 ~~~m~~~~~~p 287 (499)
|+...+.++.+
T Consensus 205 l~~a~kld~dE 215 (377)
T KOG1308|consen 205 LALACKLDYDE 215 (377)
T ss_pred HHHHHhccccH
Confidence 66665555433
No 489
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=36.00 E-value=2.2e+02 Score=25.07 Aligned_cols=55 Identities=16% Similarity=0.127 Sum_probs=24.8
Q ss_pred HHHHHhccCChhHHHHHHHHHHH----CC-CCChHHHHHHHHHHHHhCCChHHHHHHHHH
Q 010830 402 AITMLLDADEPEIAIEIWNYILE----NG-ILPLEASANELLVGLRNLGRLSDVRRFAEE 456 (499)
Q Consensus 402 li~~~~~~g~~~~a~~~~~~m~~----~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 456 (499)
+..-|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.++...+.=+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34445555555555555555431 11 112223333444445555555555444333
No 490
>PF08314 Sec39: Secretory pathway protein Sec39; InterPro: IPR013244 Sec39 was originally identified as a protein involved in ER-Golgi transport in a large scale promoter shut down analysis of essential yeast genes []. A subsequent study found that Sec39p (Dsl3p) is required for Golgi-ER retrograde transport and is part of a very stable protein complex that also includes Dsl1p (in mammals ZW10), Tip20p (Rint-1) and the ER localized Q-SNARE proteins Ufe1p (syntaxin-18), Sec20p and Use1p []. This was confirmed in a genome-wide analysis of protein complexes []. ; PDB: 3K8P_D.
Probab=35.86 E-value=4.5e+02 Score=27.72 Aligned_cols=185 Identities=8% Similarity=0.006 Sum_probs=89.7
Q ss_pred CHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHH----H-------cCCChHHHHHHHHHHHHC-
Q 010830 288 TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLL----C-------NNDDVDNVFRFFDQMVFH- 355 (499)
Q Consensus 288 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~----~-------~~~~~~~a~~~~~~m~~~- 355 (499)
.......+++++...|+++.|.+++..-.... -+.......++.+. - ..|.+.+|.++++-+...
T Consensus 431 ~~~~~~~~l~~LL~~~~f~la~~~~~~~~~~~---l~~~~~~~lvl~~~~e~fd~Asn~n~~~g~lk~A~~~L~l~~~~~ 507 (715)
T PF08314_consen 431 KDEIEEIFLEALLSSGRFSLAKSLYEESSSSP---LSSEKVEDLVLKAAWEFFDNASNGNRTRGGLKKARECLNLFPPTF 507 (715)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHTT------TT-HHHHHHHHHHHHHHHHH-SS--TTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHhcCCcCC---CCHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccCcC
Confidence 34566778888999999998888888643321 12333334343332 1 234567777777776652
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhH------HHHHHHHh-cc----CChhHHHHHHHHHHH
Q 010830 356 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC------ATAITMLL-DA----DEPEIAIEIWNYILE 424 (499)
Q Consensus 356 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~------~~li~~~~-~~----g~~~~a~~~~~~m~~ 424 (499)
.-.+...-...+|.+.....++.-. .+.|.+..+.-. ..||.-+. .. .+.++-.++.+.|..
T Consensus 508 ~~~~~~~~~~~Li~a~~~Ls~f~l~-------l~~g~p~~P~~ir~~~dpl~LI~~vLe~np~aY~~~~~ll~l~~~L~~ 580 (715)
T PF08314_consen 508 PNSPRIQREKDLIKATHALSEFSLV-------LQPGVPFLPVQIRLHSDPLSLISKVLEQNPKAYKQLEKLLDLANNLVL 580 (715)
T ss_dssp HHTHHHHHHHHHHHHHHHHTTS------------------HHHHHTTT-THHHHHHHHHHSTTGGG-HHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHhCCee-------cCCCCCCCCceeeccCChHHHHHHHHHhCchhhcCHHHHHHHHHHHHH
Confidence 0012334455566665555444321 122211111100 11222222 11 234555555555554
Q ss_pred C---------CCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC-CccCHH-HHHHHHHHHHhcccc
Q 010830 425 N---------GILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR-ILIYEV-TMHKLKKAFYNESRS 482 (499)
Q Consensus 425 ~---------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~-~~~~ll~~~~~~g~~ 482 (499)
. ...-...+....+.+-...+|++-|.+...++.+.- ..++.. .+...-.+|.+.|+.
T Consensus 581 ~~~~~~~~~~~~~~~~ri~~~~i~~AL~~~Df~~Ay~~~~~ll~~~~~~~~~~~~~~~~W~~~~q~Gk~ 649 (715)
T PF08314_consen 581 AGSDESSESDDEAAERRILSMCIEAALVEDDFETAYSYCLELLDPPSDASSSSPNDDESWRTCYQVGKY 649 (715)
T ss_dssp H-----TT---SSTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-
T ss_pred HhcccccccchHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcccccccCCCChHHHHHHHHhCC
Confidence 3 122233555666777788899999999988877541 111111 455555556666655
No 491
>PRK09857 putative transposase; Provisional
Probab=35.55 E-value=3.5e+02 Score=24.70 Aligned_cols=17 Identities=29% Similarity=0.553 Sum_probs=9.7
Q ss_pred HhhcCCchhHHHHHHHh
Q 010830 89 QLSYDSPSSAVDFFRWA 105 (499)
Q Consensus 89 ~~~~~~~~~a~~~~~~~ 105 (499)
+...++++.|..+++..
T Consensus 15 K~~fs~~~~a~~fl~~~ 31 (292)
T PRK09857 15 KLFLRQPETARDFLAFH 31 (292)
T ss_pred HHHhCCHHHHHHHHHHh
Confidence 33455666666666543
No 492
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=35.24 E-value=4e+02 Score=25.32 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=17.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 010830 221 AILLEGWEKEGNVEEANKTFGEM 243 (499)
Q Consensus 221 ~~ll~~~~~~g~~~~a~~~~~~~ 243 (499)
..|...+-.+|++++|..++.++
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el 157 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCEL 157 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhc
Confidence 44666677788888888877766
No 493
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=34.70 E-value=3.3e+02 Score=25.46 Aligned_cols=25 Identities=4% Similarity=0.070 Sum_probs=15.8
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHH
Q 010830 330 NAVIGLLCNNDDVDNVFRFFDQMVF 354 (499)
Q Consensus 330 ~~li~~~~~~~~~~~a~~~~~~m~~ 354 (499)
-.+++.|.+.|.+++|+++.....+
T Consensus 110 P~Lm~~ci~~g~y~eALel~~~~~~ 134 (338)
T PF04124_consen 110 PQLMDTCIRNGNYSEALELSAHVRR 134 (338)
T ss_pred HHHHHHHHhcccHhhHHHHHHHHHH
Confidence 3566667777777777666655443
No 494
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=34.09 E-value=94 Score=31.91 Aligned_cols=11 Identities=9% Similarity=0.374 Sum_probs=4.5
Q ss_pred ChHHHHHHHHH
Q 010830 128 RFEQMWNAVRV 138 (499)
Q Consensus 128 ~~~~a~~~~~~ 138 (499)
|+++..+.|..
T Consensus 402 D~~~~ee~Fk~ 412 (830)
T KOG1923|consen 402 DFSRFEEQFKI 412 (830)
T ss_pred hHHHHHHHHHh
Confidence 34444444433
No 495
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=34.01 E-value=2.9e+02 Score=23.31 Aligned_cols=57 Identities=7% Similarity=-0.081 Sum_probs=41.0
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHCC--------------CCChHHHHHHHHHHHHhCCChHHHHHHHHH
Q 010830 400 ATAITMLLDADEPEIAIEIWNYILENG--------------ILPLEASANELLVGLRNLGRLSDVRRFAEE 456 (499)
Q Consensus 400 ~~li~~~~~~g~~~~a~~~~~~m~~~~--------------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 456 (499)
.+++-.|-+..++.++.++++.|.+.. ..+.-.+.|.....+.+.|..+.|..++++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 345566777778888888888776532 233345667777888999999999998873
No 496
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=33.90 E-value=1.8e+02 Score=20.89 Aligned_cols=54 Identities=20% Similarity=0.271 Sum_probs=34.7
Q ss_pred hhcCCchhH----HHHHHHhcCCCCCC-----HHHHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 010830 90 LSYDSPSSA----VDFFRWAGRGQRLS-----PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG 143 (499)
Q Consensus 90 ~~~~~~~~a----~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 143 (499)
...++...| .+.|+......... ..+.-.+.......|++++|.+.+++..+.-
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 446666666 45566554433333 2334445667778899999999998886543
No 497
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=33.58 E-value=1.8e+02 Score=20.82 Aligned_cols=55 Identities=24% Similarity=0.139 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCC
Q 010830 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269 (499)
Q Consensus 214 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~ 269 (499)
+.|...-..+...+...|++++|++.+-++.+. .-..++...-..|+..+...|.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~-dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRR-DRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--TTCCCCHHHHHHHHHHHHH-T
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CccccccHHHHHHHHHHHHcCC
Confidence 456666677777888888888888888777665 2222233344445554444443
No 498
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=33.37 E-value=5.5e+02 Score=26.40 Aligned_cols=249 Identities=9% Similarity=0.003 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHH-hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 010830 78 IPTPDLVHEVLQ-LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDS 156 (499)
Q Consensus 78 ~~~~~~~~~~l~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~ 156 (499)
......+..++. +..-+.++-..++..+.... .....++.+++++...|-...+.-+.+.+....+.+...-..++..
T Consensus 343 ~~~~~~f~~Lv~~lr~l~~~~L~~l~~~~~~~~-~~~~~r~~~lDal~~aGT~~av~~i~~~I~~~~~~~~ea~~~l~~l 421 (618)
T PF01347_consen 343 KETLSKFSRLVRLLRTLSYEDLEELYKQLKSKS-KKEQARKIFLDALPQAGTNPAVKFIKDLIKSKKLTDDEAAQLLASL 421 (618)
T ss_dssp TTHHHHHHHHHHHHTTS-HHHHHHHHHHHTTS----HHHHHHHHHHHHHH-SHHHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q ss_pred HHhc-CChhHHHHHHHHHHhCCCCcCHH--------HHHHHHHHHHccCC---------chHHHHHHHHHHhccCC----
Q 010830 157 YCGA-GKYDEAVMSFDVMSMHGVEQDVV--------AVNSLLSAICRQEN---------QTSRALEFLNRVKKIVD---- 214 (499)
Q Consensus 157 ~~~~-g~~~~A~~~~~~m~~~g~~p~~~--------~~~~ll~~~~~~~~---------~~~~a~~~~~~~~~~~~---- 214 (499)
.... .=-.+.++.+..|.+.....+.. ++..++.-++.. . ......++.+.+...+.
T Consensus 422 ~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 500 (618)
T PF01347_consen 422 PFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVN-SDSAEFCDPCSRCIIEKYVPYLEQELKEAVS 500 (618)
T ss_dssp HHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT------------SS--GGGTHHHHHHHHHHHH
T ss_pred HhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeec-ccccccccccchhhHHHHHHHHHHHHHHHhh
Q ss_pred -CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHh--cCCCHHHHHHHHHHHhhCCCCCCHhh
Q 010830 215 -PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI--RGKQVDEALKFLRVMKGENCFPTLKF 291 (499)
Q Consensus 215 -~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~~~~p~~~~ 291 (499)
.|...-...++++...|....+..+..-+ .+-...+...-...|.++. .....+++.+++-.+....-.+...-
T Consensus 501 ~~~~~~~~~~LkaLgN~g~~~~i~~l~~~i---~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n~~e~~EvR 577 (618)
T PF01347_consen 501 RGDEEEKIVYLKALGNLGHPESIPVLLPYI---EGKEEVPHFIRVAAIQALRRLAKHCPEKVREILLPIFMNTTEDPEVR 577 (618)
T ss_dssp TT-HHHHHHHHHHHHHHT-GGGHHHHHTTS---TTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH-TTS-HHHH
T ss_pred ccCHHHHHHHHHHhhccCCchhhHHHHhHh---hhccccchHHHHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCChhHH
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHH
Q 010830 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLL 336 (499)
Q Consensus 292 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 336 (499)
..++.-.....-.......+...+. ..|+..+.+-+...+
T Consensus 578 iaA~~~lm~~~P~~~~l~~i~~~l~-----~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 578 IAAYLILMRCNPSPSVLQRIAQSLW-----NEPSNQVASFVYSHL 617 (618)
T ss_dssp HHHHHHHHHT---HHHHHHHHHHHT-----T-S-HHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHh-----hCchHHHHHHHHHhc
No 499
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=33.34 E-value=3.6e+02 Score=24.27 Aligned_cols=46 Identities=4% Similarity=0.099 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCHhHHHHHHHHHHHCCC
Q 010830 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIK----NKRVHEVEKFFHEMIKNEW 392 (499)
Q Consensus 344 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~ 392 (499)
.|...|.+....| +......+...|.. ..+.++|...|....+.|.
T Consensus 173 ~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 173 KALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred hHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 5666666666654 22333333333322 2356677777777766663
No 500
>cd00245 Glm_e Coenzyme B12-dependent glutamate mutase epsilon subunit-like family; contains proteins similar to Clostridium cochlearium glutamate mutase (Glm) and Streptomyces tendae Tu901 NikV. Glm catalyzes a carbon-skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate. The first step in the catalysis is a homolytic cleavage of the Co-C bond of the coenzyme B12 cofactor to generate a 5'-deoxyadenosyl radical. This radical then initiates the rearrangement reaction. C. cochlearium Glm is a sigma2epsilon2 heterotetramer. Glm plays a role in glutamate fermentation in Clostridium sp. and in members of the family Enterobacteriaceae, and in the synthesis of the lipopeptide antibiotic friulimicin in Actinoplanes friuliensis. S. tendae Tu901 glutamate mutase-like proteins NikU and NIkV participate in the synthesis of the peptidyl nucleoside antibiotic nikkomycin. NikU and NikV proteins have sequence similarity to Clostridium Glm sigma and epsilon components respectively, and may
Probab=33.11 E-value=1.6e+02 Score=28.45 Aligned_cols=84 Identities=15% Similarity=0.105 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHCCCCC---ChhhHHHHHHHHhccCChhHHHHHHH---H----HHHCCCCChHHHHHHHHHHHHhCCChH
Q 010830 379 EVEKFFHEMIKNEWQP---TPLNCATAITMLLDADEPEIAIEIWN---Y----ILENGILPLEASANELLVGLRNLGRLS 448 (499)
Q Consensus 379 ~a~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~---~----m~~~~~~p~~~~~~~ll~~~~~~g~~~ 448 (499)
.+..+++-+...|+.- -..+|+. -|.+.-.++++..-|+ + ..+.|+..+..++.-+...++ ---..
T Consensus 109 d~~~l~e~~~a~g~~a~egg~isy~~---py~k~~~Le~si~~wqy~~rl~~~y~e~gv~in~E~fg~l~~~l~-pptla 184 (428)
T cd00245 109 DARLLAEIAIASGFDATEGGPISYNL---PYSKNVPLEKSIENWQYCDRLVGFYEENGVPINREPFGPLTGTLV-PPSIL 184 (428)
T ss_pred cHHHHHHHHHHhCcccccccceeecc---ccCCCCCHHHHHHHHHHHHHHHHHHHhcCceecccCCcCcccCcC-CcHHH
Confidence 3555565555554321 1223332 2334345566655552 2 235677767666655442222 23456
Q ss_pred HHHHHHHHHHHcCCccCH
Q 010830 449 DVRRFAEEMLNRRILIYE 466 (499)
Q Consensus 449 ~a~~~~~~m~~~~~~p~~ 466 (499)
.|..+++.+...+...+.
T Consensus 185 ~aiaylea~la~glgV~~ 202 (428)
T cd00245 185 IAIQILEALLAAEQGVKS 202 (428)
T ss_pred HHHHHHHHHHHccCCCCE
Confidence 677888888877766665
Done!