Query 010830
Match_columns 499
No_of_seqs 664 out of 3365
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 15:09:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010830.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010830hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3.1E-35 1.1E-39 296.7 42.6 403 77-493 113-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2E-33 6.8E-38 283.5 39.0 402 79-494 82-546 (597)
3 4g26_A Pentatricopeptide repea 100.0 8.3E-33 2.8E-37 268.0 24.6 203 275-479 11-223 (501)
4 4g26_A Pentatricopeptide repea 100.0 2.4E-32 8.2E-37 264.8 24.3 186 219-408 28-222 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 1.5E-27 5.1E-32 227.2 45.7 378 90-480 10-387 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 2E-26 6.8E-31 219.4 44.6 361 119-492 5-367 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 2.2E-23 7.4E-28 202.5 39.4 362 108-482 21-441 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 2.8E-22 9.4E-27 194.7 38.5 345 90-450 37-444 (450)
9 2gw1_A Mitochondrial precursor 99.9 5.7E-22 1.9E-26 195.9 39.3 359 90-461 17-479 (514)
10 2gw1_A Mitochondrial precursor 99.9 5.7E-22 2E-26 195.8 38.2 371 113-494 6-479 (514)
11 3fp2_A TPR repeat-containing p 99.9 2.6E-20 8.7E-25 185.1 40.2 362 90-461 36-492 (537)
12 3fp2_A TPR repeat-containing p 99.9 2.8E-20 9.4E-25 184.9 38.9 369 113-494 25-492 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 1.6E-19 5.5E-24 169.3 38.1 315 112-460 2-335 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 1.1E-18 3.8E-23 163.6 39.4 313 147-493 3-335 (359)
15 3hym_B Cell division cycle pro 99.9 2.1E-18 7.2E-23 159.7 32.0 290 109-406 18-314 (330)
16 3hym_B Cell division cycle pro 99.8 2E-18 6.9E-23 159.9 29.0 296 72-377 15-321 (330)
17 2xm6_A Protein corresponding t 99.8 1E-15 3.6E-20 149.9 46.5 339 92-462 56-434 (490)
18 1fch_A Peroxisomal targeting s 99.8 2.2E-18 7.4E-23 162.4 25.3 300 93-420 39-354 (368)
19 1fch_A Peroxisomal targeting s 99.8 2.5E-18 8.6E-23 162.0 24.9 287 160-456 38-355 (368)
20 2xm6_A Protein corresponding t 99.8 8.7E-15 3E-19 143.3 49.9 352 110-494 36-433 (490)
21 4eqf_A PEX5-related protein; a 99.8 9.4E-19 3.2E-23 164.8 20.9 235 111-354 63-309 (365)
22 2ooe_A Cleavage stimulation fa 99.8 1E-15 3.5E-20 151.5 42.1 404 80-493 12-492 (530)
23 4eqf_A PEX5-related protein; a 99.8 2.7E-18 9.1E-23 161.7 21.7 235 146-389 64-309 (365)
24 3cv0_A Peroxisome targeting si 99.8 2E-17 6.7E-22 153.0 26.2 265 113-386 21-311 (327)
25 3spa_A Mtrpol, DNA-directed RN 99.8 9.5E-20 3.2E-24 181.7 10.3 119 325-443 126-248 (1134)
26 2ooe_A Cleavage stimulation fa 99.8 1E-14 3.5E-19 144.3 45.0 371 80-460 45-492 (530)
27 3spa_A Mtrpol, DNA-directed RN 99.8 3.4E-19 1.2E-23 177.7 12.4 151 253-410 126-286 (1134)
28 3cv0_A Peroxisome targeting si 99.8 9.9E-17 3.4E-21 148.2 26.2 253 197-458 35-313 (327)
29 3mkr_A Coatomer subunit epsilo 99.8 6E-16 2.1E-20 140.0 26.7 249 157-424 9-263 (291)
30 1b89_A Protein (clathrin heavy 99.7 2.9E-16 9.9E-21 145.4 23.5 281 91-417 15-303 (449)
31 3mkr_A Coatomer subunit epsilo 99.7 9.6E-16 3.3E-20 138.7 26.7 248 91-354 11-263 (291)
32 1b89_A Protein (clathrin heavy 99.7 9.2E-18 3.2E-22 155.3 11.8 306 125-480 15-342 (449)
33 4g1t_A Interferon-induced prot 99.7 2.9E-14 9.8E-19 139.0 35.3 364 110-493 48-459 (472)
34 4g1t_A Interferon-induced prot 99.7 4E-14 1.4E-18 138.0 33.0 359 88-468 60-468 (472)
35 1xi4_A Clathrin heavy chain; a 99.7 4.3E-13 1.5E-17 138.5 40.4 331 91-482 997-1330(1630)
36 3uq3_A Heat shock protein STI1 99.7 4.3E-14 1.5E-18 125.5 25.2 225 113-354 5-235 (258)
37 1xi4_A Clathrin heavy chain; a 99.7 3.3E-12 1.1E-16 132.1 40.9 334 98-492 967-1308(1630)
38 2pl2_A Hypothetical conserved 99.6 2.8E-14 9.7E-19 123.2 21.9 211 110-353 2-212 (217)
39 2ho1_A Type 4 fimbrial biogene 99.6 2E-13 6.8E-18 120.9 27.4 200 113-318 37-238 (252)
40 2pl2_A Hypothetical conserved 99.6 4.6E-14 1.6E-18 121.9 21.7 199 214-422 2-211 (217)
41 3u4t_A TPR repeat-containing p 99.6 2.1E-13 7.2E-18 122.3 25.9 236 113-354 3-249 (272)
42 3uq3_A Heat shock protein STI1 99.6 1.7E-13 5.7E-18 121.7 24.8 222 149-424 7-235 (258)
43 2ho1_A Type 4 fimbrial biogene 99.6 3E-13 1E-17 119.7 26.4 201 147-354 37-237 (252)
44 1ouv_A Conserved hypothetical 99.6 2E-12 6.8E-17 116.0 31.9 224 216-461 5-252 (273)
45 2q7f_A YRRB protein; TPR, prot 99.6 4.8E-14 1.6E-18 124.1 20.3 202 111-318 21-222 (243)
46 2vq2_A PILW, putative fimbrial 99.6 4.1E-13 1.4E-17 116.4 25.1 197 150-353 11-209 (225)
47 3u4t_A TPR repeat-containing p 99.6 3.6E-13 1.2E-17 120.7 25.1 236 218-461 4-251 (272)
48 1xnf_A Lipoprotein NLPI; TPR, 99.6 4.9E-14 1.7E-18 126.6 19.2 195 185-389 46-243 (275)
49 2vq2_A PILW, putative fimbrial 99.6 1E-12 3.5E-17 113.9 26.5 198 184-388 10-209 (225)
50 2h6f_A Protein farnesyltransfe 99.6 3.6E-13 1.2E-17 126.0 24.5 217 113-339 97-322 (382)
51 2h6f_A Protein farnesyltransfe 99.6 7E-13 2.4E-17 124.0 26.1 238 90-337 108-364 (382)
52 1xnf_A Lipoprotein NLPI; TPR, 99.6 5.4E-14 1.9E-18 126.3 17.9 247 126-384 18-269 (275)
53 1ouv_A Conserved hypothetical 99.6 1.5E-11 5E-16 110.3 32.1 224 251-494 3-252 (273)
54 2q7f_A YRRB protein; TPR, prot 99.6 3.4E-13 1.2E-17 118.6 20.7 199 147-354 23-221 (243)
55 4a1s_A PINS, partner of inscut 99.6 2.7E-13 9.4E-18 129.5 20.4 276 115-424 50-371 (411)
56 3e4b_A ALGK; tetratricopeptide 99.5 1.4E-12 4.9E-17 125.7 24.4 338 90-462 14-389 (452)
57 2ond_A Cleavage stimulation fa 99.5 4.9E-12 1.7E-16 115.6 26.0 218 96-319 33-271 (308)
58 3ro2_A PINS homolog, G-protein 99.5 6.8E-13 2.3E-17 122.6 20.4 274 115-389 7-331 (338)
59 3sf4_A G-protein-signaling mod 99.5 7.3E-13 2.5E-17 126.1 21.2 243 110-353 6-294 (406)
60 4a1s_A PINS, partner of inscut 99.5 4.9E-13 1.7E-17 127.7 19.9 281 149-460 50-372 (411)
61 3sf4_A G-protein-signaling mod 99.5 1.3E-12 4.3E-17 124.5 22.3 303 146-482 8-363 (406)
62 3vtx_A MAMA; tetratricopeptide 99.5 4E-12 1.4E-16 106.5 21.5 167 112-283 4-170 (184)
63 3ulq_A Response regulator aspa 99.5 6.9E-12 2.4E-16 118.5 25.2 234 223-459 109-367 (383)
64 4e6h_A MRNA 3'-END-processing 99.5 6.7E-10 2.3E-14 110.9 40.3 418 67-493 54-570 (679)
65 2ond_A Cleavage stimulation fa 99.5 3.9E-11 1.3E-15 109.6 28.0 225 130-390 33-270 (308)
66 3ro2_A PINS homolog, G-protein 99.5 1.6E-12 5.6E-17 120.0 18.9 278 149-460 7-332 (338)
67 3e4b_A ALGK; tetratricopeptide 99.5 4.3E-11 1.5E-15 115.4 28.7 335 92-459 48-420 (452)
68 4abn_A Tetratricopeptide repea 99.5 4.7E-12 1.6E-16 122.9 21.5 214 198-420 83-316 (474)
69 3nf1_A KLC 1, kinesin light ch 99.5 5.2E-13 1.8E-17 122.1 13.0 173 109-282 23-223 (311)
70 4e6h_A MRNA 3'-END-processing 99.4 8.2E-10 2.8E-14 110.3 35.5 391 94-494 47-534 (679)
71 3vtx_A MAMA; tetratricopeptide 99.4 3.3E-11 1.1E-15 100.9 21.1 166 146-317 4-169 (184)
72 4abn_A Tetratricopeptide repea 99.4 1.3E-11 4.5E-16 119.7 20.8 207 96-309 85-312 (474)
73 3ulq_A Response regulator aspa 99.4 7.1E-11 2.4E-15 111.5 25.1 233 260-495 109-370 (383)
74 3nf1_A KLC 1, kinesin light ch 99.4 4.4E-12 1.5E-16 115.9 16.2 171 146-317 26-223 (311)
75 3q15_A PSP28, response regulat 99.4 2.6E-10 9E-15 107.4 27.3 235 222-459 106-364 (378)
76 3as5_A MAMA; tetratricopeptide 99.4 4.9E-11 1.7E-15 99.6 19.2 163 114-281 9-171 (186)
77 4gyw_A UDP-N-acetylglucosamine 99.3 5.5E-11 1.9E-15 120.1 19.3 168 110-282 6-173 (723)
78 1hz4_A MALT regulatory protein 99.3 1.9E-09 6.6E-14 101.2 28.5 239 221-459 57-321 (373)
79 3q15_A PSP28, response regulat 99.3 2E-09 6.7E-14 101.4 28.4 307 111-424 8-364 (378)
80 1hz4_A MALT regulatory protein 99.3 2.6E-09 9E-14 100.3 28.6 205 220-424 96-321 (373)
81 3as5_A MAMA; tetratricopeptide 99.3 3.9E-10 1.3E-14 94.0 20.3 162 220-389 11-172 (186)
82 4i17_A Hypothetical protein; T 99.3 9.1E-10 3.1E-14 95.6 21.1 208 110-333 4-221 (228)
83 4gyw_A UDP-N-acetylglucosamine 99.2 4.2E-10 1.4E-14 113.7 20.6 165 216-389 8-173 (723)
84 3edt_B KLC 2, kinesin light ch 99.2 1.5E-10 5.2E-15 103.9 14.8 207 217-424 43-280 (283)
85 3edt_B KLC 2, kinesin light ch 99.2 1.6E-10 5.4E-15 103.8 14.3 65 217-281 127-196 (283)
86 4i17_A Hypothetical protein; T 99.2 3.6E-09 1.2E-13 91.7 22.1 204 145-366 5-218 (228)
87 1qqe_A Vesicular transport pro 99.1 3.5E-09 1.2E-13 95.7 19.0 131 326-458 117-267 (292)
88 2pzi_A Probable serine/threoni 99.1 9.4E-10 3.2E-14 111.6 16.0 174 90-269 402-583 (681)
89 2fo7_A Synthetic consensus TPR 99.1 4.6E-09 1.6E-13 82.2 16.7 127 115-243 3-129 (136)
90 1qqe_A Vesicular transport pro 99.1 4.4E-09 1.5E-13 95.0 18.4 161 156-317 46-227 (292)
91 3qky_A Outer membrane assembly 99.1 6.4E-09 2.2E-13 92.3 18.8 135 110-245 12-176 (261)
92 2fo7_A Synthetic consensus TPR 99.1 9.2E-09 3.1E-13 80.5 16.8 129 149-282 3-131 (136)
93 3qou_A Protein YBBN; thioredox 99.1 4E-09 1.4E-13 95.0 15.9 175 100-280 104-281 (287)
94 2uy1_A Cleavage stimulation fa 99.0 1.1E-06 3.7E-11 85.2 31.9 358 81-459 15-412 (493)
95 2yhc_A BAMD, UPF0169 lipoprote 99.0 2.9E-08 9.8E-13 85.8 18.6 182 113-319 4-214 (225)
96 3mv2_B Coatomer subunit epsilo 99.0 2.2E-07 7.4E-12 82.5 24.0 145 202-353 85-238 (310)
97 3qky_A Outer membrane assembly 99.0 3.5E-08 1.2E-12 87.5 19.2 97 146-245 14-125 (261)
98 3urz_A Uncharacterized protein 99.0 2.8E-08 9.5E-13 84.7 17.8 124 188-317 60-185 (208)
99 3urz_A Uncharacterized protein 99.0 3.3E-08 1.1E-12 84.3 17.9 111 220-337 7-133 (208)
100 2pzi_A Probable serine/threoni 99.0 7.8E-09 2.7E-13 104.9 15.9 153 124-282 402-562 (681)
101 3mv2_B Coatomer subunit epsilo 99.0 8.1E-08 2.8E-12 85.3 19.7 179 132-318 85-282 (310)
102 3qou_A Protein YBBN; thioredox 99.0 3.8E-08 1.3E-12 88.6 18.1 167 214-388 114-282 (287)
103 2r5s_A Uncharacterized protein 99.0 4E-09 1.4E-13 87.3 10.8 157 116-278 9-168 (176)
104 2r5s_A Uncharacterized protein 99.0 1.8E-08 6.1E-13 83.4 14.5 163 219-389 8-172 (176)
105 3rjv_A Putative SEL1 repeat pr 98.9 1.8E-07 6.1E-12 79.9 20.9 175 273-461 5-198 (212)
106 4ga2_A E3 SUMO-protein ligase 98.9 4.1E-09 1.4E-13 84.6 9.5 141 123-268 7-148 (150)
107 3dra_A Protein farnesyltransfe 98.9 1.7E-06 5.7E-11 77.6 27.4 170 95-269 49-235 (306)
108 2vsy_A XCC0866; transferase, g 98.9 2.8E-08 9.7E-13 98.9 17.5 153 92-246 2-157 (568)
109 3dra_A Protein farnesyltransfe 98.9 9E-07 3.1E-11 79.4 25.2 228 123-355 43-287 (306)
110 2vsy_A XCC0866; transferase, g 98.9 3.4E-08 1.2E-12 98.3 17.3 154 126-284 2-158 (568)
111 2yhc_A BAMD, UPF0169 lipoprote 98.9 1.5E-07 5E-12 81.3 19.2 58 366-425 152-213 (225)
112 4ga2_A E3 SUMO-protein ligase 98.9 2E-08 6.7E-13 80.6 12.2 137 197-340 11-148 (150)
113 2uy1_A Cleavage stimulation fa 98.9 3.4E-05 1.2E-09 74.6 36.2 345 127-495 28-415 (493)
114 3u3w_A Transcriptional activat 98.9 1E-06 3.5E-11 79.5 24.1 215 169-389 33-265 (293)
115 3rjv_A Putative SEL1 repeat pr 98.9 3.4E-07 1.2E-11 78.1 19.4 163 253-426 17-198 (212)
116 2ifu_A Gamma-SNAP; membrane fu 98.8 9E-08 3.1E-12 87.1 16.1 167 160-353 4-182 (307)
117 2ifu_A Gamma-SNAP; membrane fu 98.8 1.8E-07 6E-12 85.1 17.5 161 262-423 44-222 (307)
118 3q7a_A Farnesyltransferase alp 98.7 8.3E-06 2.8E-10 73.9 25.5 174 92-270 67-258 (349)
119 3u3w_A Transcriptional activat 98.7 3.2E-06 1.1E-10 76.1 22.7 89 120-209 82-181 (293)
120 3q7a_A Farnesyltransferase alp 98.7 2.2E-05 7.6E-10 71.1 26.9 184 116-304 57-257 (349)
121 2qfc_A PLCR protein; TPR, HTH, 98.7 6.3E-06 2.2E-10 74.2 23.6 128 115-243 77-222 (293)
122 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.2E-06 4E-11 74.7 17.7 130 150-284 9-151 (213)
123 1a17_A Serine/threonine protei 98.7 9E-07 3.1E-11 71.9 15.8 95 115-211 15-109 (166)
124 1hh8_A P67PHOX, NCF-2, neutrop 98.7 2.8E-06 9.6E-11 72.3 19.5 129 256-391 8-151 (213)
125 4f3v_A ESX-1 secretion system 98.7 2.3E-06 7.8E-11 75.0 18.8 188 125-318 18-237 (282)
126 2qfc_A PLCR protein; TPR, HTH, 98.7 3.2E-06 1.1E-10 76.1 20.8 135 219-353 77-223 (293)
127 1na0_A Designed protein CTPR3; 98.7 1E-06 3.6E-11 67.4 15.0 95 113-209 9-103 (125)
128 1a17_A Serine/threonine protei 98.6 1E-06 3.5E-11 71.6 15.3 128 148-280 14-143 (166)
129 2lni_A Stress-induced-phosphop 98.6 9.1E-07 3.1E-11 68.8 14.1 97 111-209 14-110 (133)
130 3gyz_A Chaperone protein IPGC; 98.6 7.8E-07 2.7E-11 70.9 13.5 103 248-354 30-132 (151)
131 4gco_A Protein STI-1; structur 98.6 1.3E-06 4.6E-11 67.3 14.1 106 150-260 16-121 (126)
132 1na0_A Designed protein CTPR3; 98.6 1.6E-06 5.6E-11 66.3 14.6 112 147-263 9-120 (125)
133 4gco_A Protein STI-1; structur 98.6 1.7E-06 5.7E-11 66.8 14.1 110 113-224 13-122 (126)
134 2vyi_A SGTA protein; chaperone 98.6 1.5E-06 5E-11 67.2 13.9 62 114-175 13-74 (131)
135 2c2l_A CHIP, carboxy terminus 98.6 6.2E-07 2.1E-11 80.3 13.2 92 150-243 7-98 (281)
136 2lni_A Stress-induced-phosphop 98.6 2.2E-06 7.5E-11 66.5 14.3 117 146-267 15-131 (133)
137 2e2e_A Formate-dependent nitri 98.5 6.7E-07 2.3E-11 73.8 11.5 95 184-282 46-143 (177)
138 3gw4_A Uncharacterized protein 98.5 1.2E-06 4.2E-11 73.9 13.4 157 197-353 6-174 (203)
139 4f3v_A ESX-1 secretion system 98.5 5.2E-07 1.8E-11 79.0 11.1 190 91-284 18-238 (282)
140 3gw4_A Uncharacterized protein 98.5 7.8E-07 2.7E-11 75.1 12.0 63 219-281 109-174 (203)
141 1p5q_A FKBP52, FK506-binding p 98.5 1.1E-07 3.8E-12 87.6 7.1 122 146-273 146-283 (336)
142 3gyz_A Chaperone protein IPGC; 98.5 7.5E-07 2.6E-11 71.1 10.9 95 219-317 38-132 (151)
143 2c2l_A CHIP, carboxy terminus 98.5 4.8E-07 1.6E-11 81.0 10.7 99 111-211 2-100 (281)
144 2vyi_A SGTA protein; chaperone 98.5 2.9E-06 9.8E-11 65.5 13.8 116 148-268 13-128 (131)
145 2e2e_A Formate-dependent nitri 98.5 7.3E-07 2.5E-11 73.6 10.7 121 124-246 21-144 (177)
146 3dss_A Geranylgeranyl transfer 98.5 7.8E-05 2.7E-09 67.2 24.4 183 95-282 46-266 (331)
147 2vgx_A Chaperone SYCD; alterna 98.5 1E-06 3.5E-11 70.2 11.0 108 102-211 10-117 (148)
148 2vgx_A Chaperone SYCD; alterna 98.5 1.2E-06 4.2E-11 69.8 11.1 108 136-245 10-117 (148)
149 2fbn_A 70 kDa peptidylprolyl i 98.4 2.3E-07 7.8E-12 78.3 6.4 122 149-274 40-176 (198)
150 1p5q_A FKBP52, FK506-binding p 98.4 3.8E-06 1.3E-10 77.2 14.7 132 112-245 146-293 (336)
151 1elw_A TPR1-domain of HOP; HOP 98.4 1.2E-05 4E-10 60.6 14.8 61 115-175 6-66 (118)
152 2xcb_A PCRH, regulatory protei 98.4 1.9E-06 6.3E-11 68.2 10.4 98 112-211 17-114 (142)
153 3upv_A Heat shock protein STI1 98.4 7.4E-06 2.5E-10 63.0 12.9 92 115-208 6-97 (126)
154 1elw_A TPR1-domain of HOP; HOP 98.4 1.6E-05 5.6E-10 59.8 14.7 95 148-244 5-99 (118)
155 2xcb_A PCRH, regulatory protei 98.4 1.8E-06 6.2E-11 68.2 9.2 97 147-245 18-114 (142)
156 3upv_A Heat shock protein STI1 98.3 1.6E-05 5.5E-10 61.1 14.3 96 148-245 5-100 (126)
157 4b4t_Q 26S proteasome regulato 98.3 3E-05 1E-09 74.0 19.1 198 120-317 11-244 (434)
158 2kck_A TPR repeat; tetratricop 98.3 9.1E-06 3.1E-10 60.6 11.8 98 253-354 5-105 (112)
159 3dss_A Geranylgeranyl transfer 98.3 0.0004 1.4E-08 62.6 24.2 234 125-390 41-304 (331)
160 4gcn_A Protein STI-1; structur 98.3 1.2E-05 4.2E-10 61.9 12.5 97 218-317 9-111 (127)
161 2dba_A Smooth muscle cell asso 98.3 3.3E-05 1.1E-09 61.0 15.4 94 149-245 30-127 (148)
162 3q49_B STIP1 homology and U bo 98.3 1.4E-05 4.8E-10 62.3 12.6 99 110-210 6-104 (137)
163 2dba_A Smooth muscle cell asso 98.3 3.4E-05 1.2E-09 60.9 14.7 109 111-221 26-137 (148)
164 3sz7_A HSC70 cochaperone (SGT) 98.2 1.9E-05 6.5E-10 64.0 13.1 98 112-211 10-107 (164)
165 4b4t_Q 26S proteasome regulato 98.2 5.6E-05 1.9E-09 72.1 18.3 200 154-354 11-244 (434)
166 2fbn_A 70 kDa peptidylprolyl i 98.2 1.9E-05 6.6E-10 66.3 13.3 129 113-243 38-183 (198)
167 4gcn_A Protein STI-1; structur 98.2 2.9E-05 9.9E-10 59.8 12.6 55 296-353 15-69 (127)
168 2kck_A TPR repeat; tetratricop 98.2 2.1E-05 7.1E-10 58.6 11.5 95 219-317 8-105 (112)
169 3q49_B STIP1 homology and U bo 98.2 3.8E-05 1.3E-09 59.8 13.2 97 217-317 9-105 (137)
170 1elr_A TPR2A-domain of HOP; HO 98.2 1.9E-05 6.6E-10 60.7 11.3 25 257-281 82-106 (131)
171 3sz7_A HSC70 cochaperone (SGT) 98.2 3.4E-05 1.2E-09 62.5 13.2 99 146-246 10-108 (164)
172 1elr_A TPR2A-domain of HOP; HO 98.2 2E-05 6.9E-10 60.6 11.2 62 114-175 5-66 (131)
173 3ro3_A PINS homolog, G-protein 98.1 3E-05 1E-09 62.2 11.1 133 327-459 10-157 (164)
174 1hxi_A PEX5, peroxisome target 98.1 2.9E-05 9.9E-10 59.2 10.3 91 223-317 23-113 (121)
175 1hxi_A PEX5, peroxisome target 98.1 4.6E-05 1.6E-09 58.1 11.2 88 119-208 23-110 (121)
176 2xev_A YBGF; tetratricopeptide 98.1 9.9E-05 3.4E-09 56.7 13.4 49 197-245 53-104 (129)
177 3ro3_A PINS homolog, G-protein 98.1 3.3E-05 1.1E-09 61.9 11.0 25 219-243 91-115 (164)
178 2xev_A YBGF; tetratricopeptide 98.1 0.00014 4.9E-09 55.7 14.1 97 117-216 6-109 (129)
179 1wao_1 Serine/threonine protei 98.0 1.9E-05 6.5E-10 76.3 9.8 119 121-241 14-134 (477)
180 1ihg_A Cyclophilin 40; ppiase 98.0 6.9E-05 2.4E-09 69.7 12.8 139 114-275 224-362 (370)
181 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 0.0001 3.5E-09 70.8 14.2 95 183-281 318-413 (457)
182 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 8E-05 2.7E-09 71.6 13.5 146 147-317 268-414 (457)
183 3k9i_A BH0479 protein; putativ 98.0 1.8E-05 6.2E-10 59.9 7.2 85 92-176 3-90 (117)
184 2if4_A ATFKBP42; FKBP-like, al 98.0 3.3E-05 1.1E-09 71.0 10.1 147 148-318 180-328 (338)
185 1dce_A Protein (RAB geranylger 97.9 0.00062 2.1E-08 67.0 19.5 175 93-272 43-244 (567)
186 1ihg_A Cyclophilin 40; ppiase 97.9 9.1E-05 3.1E-09 68.8 12.9 139 148-310 224-362 (370)
187 3k9i_A BH0479 protein; putativ 97.9 3.3E-05 1.1E-09 58.5 8.2 84 161-245 4-89 (117)
188 1wao_1 Serine/threonine protei 97.9 2.2E-05 7.4E-10 75.9 8.7 121 153-278 12-134 (477)
189 2if4_A ATFKBP42; FKBP-like, al 97.9 6.1E-05 2.1E-09 69.2 10.0 149 113-283 179-328 (338)
190 3rkv_A Putative peptidylprolyl 97.9 0.00023 7.9E-09 57.3 12.4 64 217-283 63-126 (162)
191 3rkv_A Putative peptidylprolyl 97.8 0.00013 4.3E-09 58.9 10.3 29 114-142 12-40 (162)
192 3n71_A Histone lysine methyltr 97.8 0.00018 6.3E-09 69.0 12.1 99 291-389 353-463 (490)
193 3n71_A Histone lysine methyltr 97.8 0.00028 9.6E-09 67.8 13.3 126 229-354 321-463 (490)
194 2kat_A Uncharacterized protein 97.8 0.00025 8.6E-09 53.2 10.5 80 96-175 2-81 (115)
195 2l6j_A TPR repeat-containing p 97.7 4.1E-05 1.4E-09 57.0 5.6 65 112-176 3-67 (111)
196 1dce_A Protein (RAB geranylger 97.7 0.0023 7.8E-08 63.0 19.1 137 125-266 41-190 (567)
197 2hr2_A Hypothetical protein; a 97.7 0.00052 1.8E-08 54.2 11.0 64 219-282 59-130 (159)
198 1klx_A Cysteine rich protein B 97.6 0.0016 5.5E-08 50.6 13.7 10 412-421 113-122 (138)
199 1klx_A Cysteine rich protein B 97.6 0.0022 7.4E-08 49.9 14.1 110 341-461 10-127 (138)
200 2kat_A Uncharacterized protein 97.6 0.00047 1.6E-08 51.7 9.3 77 202-281 4-80 (115)
201 2hr2_A Hypothetical protein; a 97.5 0.0014 4.8E-08 51.7 11.2 61 184-245 59-130 (159)
202 2l6j_A TPR repeat-containing p 97.5 7.4E-05 2.5E-09 55.6 3.6 61 219-282 6-66 (111)
203 1na3_A Designed protein CTPR2; 97.5 0.0014 4.7E-08 46.3 10.2 79 112-191 8-86 (91)
204 3ma5_A Tetratricopeptide repea 97.4 0.00099 3.4E-08 48.4 8.9 66 110-175 4-69 (100)
205 1na3_A Designed protein CTPR2; 97.4 0.0016 5.5E-08 45.9 9.6 60 220-282 12-71 (91)
206 1zu2_A Mitochondrial import re 97.3 0.00052 1.8E-08 54.1 7.0 97 94-192 17-134 (158)
207 3ma5_A Tetratricopeptide repea 97.3 0.0015 5.1E-08 47.4 8.7 65 215-282 5-69 (100)
208 1zu2_A Mitochondrial import re 97.2 0.001 3.4E-08 52.4 7.0 95 197-296 16-131 (158)
209 3ly7_A Transcriptional activat 96.9 0.039 1.3E-06 50.0 15.7 65 251-317 274-338 (372)
210 3ly7_A Transcriptional activat 96.9 0.025 8.5E-07 51.3 14.3 154 212-400 189-347 (372)
211 3bee_A Putative YFRE protein; 96.8 0.015 5.2E-07 41.3 10.1 69 109-177 2-73 (93)
212 3mkq_A Coatomer beta'-subunit; 96.8 0.028 9.6E-07 58.2 16.1 152 226-421 608-761 (814)
213 3qww_A SET and MYND domain-con 96.7 0.0045 1.5E-07 58.4 8.8 85 197-281 312-409 (433)
214 3qwp_A SET and MYND domain-con 96.6 0.013 4.4E-07 55.3 10.8 90 227-316 297-398 (429)
215 3qww_A SET and MYND domain-con 96.5 0.01 3.5E-07 55.9 9.7 64 291-354 342-410 (433)
216 2kc7_A BFR218_protein; tetratr 96.5 0.0076 2.6E-07 43.3 6.7 48 197-244 14-62 (99)
217 3mkq_A Coatomer beta'-subunit; 96.4 0.12 4.2E-06 53.3 18.0 129 156-319 608-737 (814)
218 3qwp_A SET and MYND domain-con 96.4 0.015 5.1E-07 54.9 10.0 89 266-354 299-399 (429)
219 3mkq_B Coatomer subunit alpha; 96.4 0.27 9.2E-06 39.2 15.7 128 226-387 14-141 (177)
220 3u64_A Protein TP_0956; tetrat 96.3 0.36 1.2E-05 42.0 17.2 93 342-436 179-282 (301)
221 3bee_A Putative YFRE protein; 96.2 0.062 2.1E-06 38.1 10.2 68 214-284 3-73 (93)
222 2kc7_A BFR218_protein; tetratr 96.2 0.035 1.2E-06 39.6 9.0 58 119-176 6-64 (99)
223 1wy6_A Hypothetical protein ST 96.0 0.34 1.2E-05 36.4 15.4 65 290-357 92-156 (172)
224 3u64_A Protein TP_0956; tetrat 96.0 0.54 1.8E-05 40.9 16.4 90 305-400 179-281 (301)
225 1pc2_A Mitochondria fission pr 95.7 0.085 2.9E-06 41.0 9.6 84 97-182 16-104 (152)
226 1wy6_A Hypothetical protein ST 95.4 0.6 2E-05 35.1 15.5 63 256-319 93-155 (172)
227 1pc2_A Mitochondria fission pr 95.4 0.19 6.5E-06 39.0 10.4 82 377-460 14-100 (152)
228 3mkq_B Coatomer subunit alpha; 95.4 0.82 2.8E-05 36.5 16.6 26 147-172 34-59 (177)
229 2v5f_A Prolyl 4-hydroxylase su 95.1 0.29 9.9E-06 35.3 10.4 65 112-176 4-75 (104)
230 4b4t_P 26S proteasome regulato 94.8 2.8 9.5E-05 39.5 21.1 166 293-458 141-322 (445)
231 2v5f_A Prolyl 4-hydroxylase su 94.7 0.26 9E-06 35.5 9.2 63 398-460 7-75 (104)
232 4h7y_A Dual specificity protei 94.6 0.34 1.2E-05 37.2 9.5 51 303-356 74-124 (161)
233 4h7y_A Dual specificity protei 94.2 0.66 2.3E-05 35.6 10.3 66 409-476 73-138 (161)
234 4gns_B Protein CSD3, chitin bi 94.0 0.42 1.4E-05 48.0 11.7 127 149-280 250-397 (754)
235 4ady_A RPN2, 26S proteasome re 93.3 8.6 0.00029 39.7 26.0 352 115-482 341-722 (963)
236 2ff4_A Probable regulatory pro 93.3 0.39 1.3E-05 44.5 9.5 56 152-209 176-231 (388)
237 1nzn_A CGI-135 protein, fissio 93.0 1.7 6E-05 32.3 10.7 32 220-254 77-108 (126)
238 1nzn_A CGI-135 protein, fissio 92.8 0.73 2.5E-05 34.4 8.4 85 374-460 14-103 (126)
239 2wpv_A GET4, UPF0363 protein Y 91.9 6.3 0.00021 34.8 20.1 112 116-241 36-158 (312)
240 1v54_E Cytochrome C oxidase po 91.3 1 3.4E-05 31.8 7.0 58 165-223 28-85 (109)
241 4fhn_B Nucleoporin NUP120; pro 91.2 9.8 0.00034 40.9 18.4 208 223-454 818-1043(1139)
242 1v54_E Cytochrome C oxidase po 90.6 3.3 0.00011 29.2 9.5 63 269-334 25-87 (109)
243 4b4t_P 26S proteasome regulato 90.3 12 0.00042 35.1 18.8 246 230-479 29-306 (445)
244 4ady_A RPN2, 26S proteasome re 90.1 19 0.00065 37.2 28.6 299 149-459 341-657 (963)
245 4fhn_B Nucleoporin NUP120; pro 89.9 14 0.00048 39.7 18.2 184 92-282 825-1049(1139)
246 3lpz_A GET4 (YOR164C homolog); 89.8 10 0.00035 33.7 21.3 112 115-240 37-159 (336)
247 2ff4_A Probable regulatory pro 89.2 1.9 6.3E-05 39.9 9.5 68 221-291 175-247 (388)
248 3eiq_C Programmed cell death p 88.3 9.9 0.00034 34.3 13.2 69 219-292 56-126 (358)
249 4gns_B Protein CSD3, chitin bi 88.0 14 0.00049 37.2 15.4 129 115-244 250-398 (754)
250 1zbp_A Hypothetical protein VP 87.9 5.8 0.0002 33.9 10.8 118 120-246 4-129 (273)
251 2y69_E Cytochrome C oxidase su 87.8 5.8 0.0002 29.7 9.2 62 270-334 69-130 (152)
252 2y69_E Cytochrome C oxidase su 87.4 2.5 8.4E-05 31.6 7.0 46 166-212 72-117 (152)
253 3lvg_A Clathrin heavy chain 1; 87.2 0.0017 5.8E-08 60.2 -11.8 114 114-241 55-168 (624)
254 3txn_A 26S proteasome regulato 85.3 22 0.00077 32.6 23.3 235 219-457 21-281 (394)
255 3txn_A 26S proteasome regulato 84.8 24 0.00081 32.4 21.8 234 150-387 22-281 (394)
256 4b4t_R RPN7, 26S proteasome re 84.0 12 0.00043 34.9 12.3 100 218-318 132-237 (429)
257 3ffl_A Anaphase-promoting comp 83.8 6 0.00021 31.0 8.1 56 189-245 27-91 (167)
258 4b4t_R RPN7, 26S proteasome re 82.7 12 0.0004 35.1 11.5 98 327-424 132-236 (429)
259 3lvg_A Clathrin heavy chain 1; 82.2 0.011 3.9E-07 54.9 -8.8 216 112-346 82-324 (624)
260 2nsz_A Programmed cell death p 79.8 17 0.00057 27.2 10.2 65 364-429 10-76 (129)
261 2ion_A PDCD4, programmed cell 77.9 16 0.00055 28.2 8.9 66 363-429 11-78 (152)
262 4a1g_A Mitotic checkpoint seri 77.7 20 0.00068 27.6 9.1 49 132-180 84-134 (152)
263 3esl_A Checkpoint serine/threo 77.1 28 0.00096 28.3 10.4 57 230-287 92-148 (202)
264 1zbp_A Hypothetical protein VP 75.3 13 0.00046 31.7 8.3 52 265-317 8-59 (273)
265 3o48_A Mitochondria fission 1 74.2 25 0.00086 26.3 10.1 71 393-465 37-110 (134)
266 2uwj_G Type III export protein 74.2 19 0.00066 25.2 7.2 78 94-177 21-98 (115)
267 2p58_C Putative type III secre 74.0 20 0.00069 25.2 8.1 78 94-177 22-99 (116)
268 3ffl_A Anaphase-promoting comp 72.2 33 0.0011 26.8 9.9 118 328-458 22-149 (167)
269 3o48_A Mitochondria fission 1 70.5 31 0.0011 25.8 9.8 20 370-389 87-106 (134)
270 1wdy_A 2-5A-dependent ribonucl 69.8 23 0.00079 30.2 9.2 21 340-360 193-213 (285)
271 2uwj_G Type III export protein 69.7 26 0.00089 24.6 7.5 48 192-245 49-96 (115)
272 2p58_C Putative type III secre 68.9 27 0.00094 24.5 9.2 43 197-244 54-96 (116)
273 2wpv_A GET4, UPF0363 protein Y 68.2 63 0.0022 28.5 24.3 22 280-301 83-104 (312)
274 1wdy_A 2-5A-dependent ribonucl 68.1 20 0.00068 30.6 8.4 47 408-454 191-239 (285)
275 3esl_A Checkpoint serine/threo 67.6 48 0.0017 26.9 11.3 54 412-465 95-149 (202)
276 1ug3_A EIF4GI, eukaryotic prot 66.1 74 0.0025 28.4 12.0 24 221-244 15-38 (339)
277 3hra_A Ankyrin repeat family p 65.1 10 0.00034 30.6 5.5 15 123-137 12-26 (201)
278 1k1a_A B-cell lymphoma 3-encod 63.8 21 0.00073 29.6 7.5 85 260-351 12-101 (241)
279 3eu9_A Huntingtin-interacting 62.5 8.3 0.00029 32.1 4.7 54 438-497 181-236 (240)
280 2zu6_B Programmed cell death p 60.9 87 0.003 27.5 11.1 60 219-282 5-66 (307)
281 1qsa_A Protein (soluble lytic 59.5 1.4E+02 0.0047 29.4 36.4 275 63-354 53-347 (618)
282 4g8k_A 2-5A-dependent ribonucl 59.5 92 0.0032 27.4 12.2 105 347-466 220-329 (337)
283 3jxi_A Vanilloid receptor-rela 59.0 9.5 0.00032 32.4 4.4 56 296-353 9-73 (260)
284 2d2s_A Exocyst complex compone 58.9 59 0.002 27.2 9.0 31 215-245 89-119 (235)
285 2nsz_A Programmed cell death p 57.9 43 0.0015 24.9 7.3 62 116-177 10-73 (129)
286 2zu6_B Programmed cell death p 57.6 99 0.0034 27.1 15.2 98 399-497 169-274 (307)
287 2fu4_A Ferric uptake regulatio 57.0 40 0.0014 22.4 6.8 59 422-481 8-67 (83)
288 2jul_A Calsenilin; EF-hand, ca 56.5 89 0.0031 26.3 10.7 28 253-280 228-255 (256)
289 3bu8_A Telomeric repeat-bindin 56.3 75 0.0026 26.0 8.5 22 439-460 122-143 (235)
290 1y8m_A FIS1; mitochondria, unk 56.2 64 0.0022 24.5 12.4 66 287-354 37-105 (144)
291 3t8k_A Uncharacterized protein 53.8 61 0.0021 25.7 8.2 64 333-396 42-109 (186)
292 3lpz_A GET4 (YOR164C homolog); 51.1 1.3E+02 0.0046 26.7 26.9 70 313-384 83-159 (336)
293 2ion_A PDCD4, programmed cell 51.0 35 0.0012 26.3 5.9 62 116-177 12-75 (152)
294 2r9g_A AAA ATPase, central reg 50.9 97 0.0033 25.0 9.4 60 259-319 16-83 (204)
295 3eu9_A Huntingtin-interacting 50.8 30 0.001 28.5 6.3 15 407-421 218-232 (240)
296 3b7b_A Euchromatic histone-lys 50.7 30 0.001 28.6 6.2 18 372-389 218-235 (237)
297 2keb_A DNA polymerase subunit 49.0 53 0.0018 22.9 5.7 60 413-474 26-90 (101)
298 1ug3_A EIF4GI, eukaryotic prot 48.5 43 0.0015 30.0 7.1 25 329-353 14-38 (339)
299 1n11_A Ankyrin; clathrin, BAND 48.4 1E+02 0.0035 28.3 10.1 15 193-208 121-135 (437)
300 1k1a_A B-cell lymphoma 3-encod 48.2 76 0.0026 26.0 8.4 21 157-177 16-36 (241)
301 2rfa_A Transient receptor pote 47.8 96 0.0033 25.3 8.9 20 372-391 162-181 (232)
302 4b4t_S RPN3, 26S proteasome re 47.6 33 0.0011 32.7 6.2 68 147-215 231-302 (523)
303 3ltm_A Alpha-REP4; protein eng 47.4 1.1E+02 0.0037 24.6 19.5 18 111-128 31-48 (211)
304 2fe3_A Peroxide operon regulat 47.3 90 0.0031 23.6 8.0 58 422-480 13-70 (145)
305 2xig_A Ferric uptake regulatio 47.1 93 0.0032 23.7 8.0 58 422-480 18-75 (150)
306 3kea_A K1L; tropism, ANK repea 46.8 89 0.003 26.8 8.8 15 383-397 210-224 (285)
307 3kea_A K1L; tropism, ANK repea 46.7 25 0.00085 30.4 5.1 10 372-381 169-178 (285)
308 3ltj_A Alpharep-4; protein eng 46.2 1.1E+02 0.0038 24.3 18.5 15 113-127 28-42 (201)
309 1y8m_A FIS1; mitochondria, unk 45.0 99 0.0034 23.4 13.4 67 394-460 37-106 (144)
310 4a1g_A Mitotic checkpoint seri 44.7 1E+02 0.0036 23.6 10.3 51 236-287 84-134 (152)
311 2wvi_A Mitotic checkpoint seri 44.6 1.1E+02 0.0038 23.9 9.1 50 132-181 79-130 (164)
312 1n11_A Ankyrin; clathrin, BAND 43.9 48 0.0016 30.7 7.0 49 192-242 87-135 (437)
313 3hra_A Ankyrin repeat family p 43.7 39 0.0013 26.9 5.6 13 416-428 158-170 (201)
314 1bpo_A Protein (clathrin); cla 42.3 1E+02 0.0035 28.8 8.3 94 76-169 356-451 (494)
315 1qsa_A Protein (soluble lytic 42.2 2.6E+02 0.0089 27.4 28.6 331 94-460 54-410 (618)
316 3ltm_A Alpha-REP4; protein eng 42.0 1.3E+02 0.0045 24.0 19.2 79 146-232 32-110 (211)
317 1mzb_A Ferric uptake regulatio 42.0 95 0.0033 23.1 7.1 59 387-446 9-68 (136)
318 3ctd_A Putative ATPase, AAA fa 41.8 1.4E+02 0.0048 24.3 8.8 63 257-319 35-105 (213)
319 3eiq_C Programmed cell death p 41.7 2E+02 0.0067 25.9 16.7 64 292-358 220-285 (358)
320 3b7b_A Euchromatic histone-lys 40.5 61 0.0021 26.6 6.5 19 441-459 217-235 (237)
321 4g8k_A 2-5A-dependent ribonucl 40.4 1.9E+02 0.0064 25.3 12.4 106 308-431 218-329 (337)
322 3ltj_A Alpharep-4; protein eng 40.1 1.4E+02 0.0047 23.7 18.8 11 117-127 63-73 (201)
323 2b7e_A PRE-mRNA processing pro 39.3 26 0.00087 21.9 2.7 29 234-264 3-31 (59)
324 3bge_A Predicted ATPase; struc 39.2 1.5E+02 0.0052 23.9 9.0 60 260-319 10-77 (201)
325 2etb_A Transient receptor pote 39.0 23 0.00078 29.9 3.6 24 296-319 6-29 (256)
326 4aez_C MAD3, mitotic spindle c 38.9 1.7E+02 0.0056 24.2 9.2 53 234-287 131-183 (223)
327 2w57_A Ferric uptake regulatio 37.4 1.1E+02 0.0036 23.4 6.8 59 387-446 8-67 (150)
328 4aez_C MAD3, mitotic spindle c 37.2 1.8E+02 0.006 24.1 8.6 53 413-465 131-184 (223)
329 3eyy_A Putative iron uptake re 36.8 85 0.0029 23.8 6.1 34 447-480 33-66 (145)
330 4ets_A Ferric uptake regulatio 36.4 85 0.0029 24.4 6.2 70 234-305 14-85 (162)
331 2ijq_A Hypothetical protein; s 36.2 95 0.0032 24.1 6.2 53 372-424 43-103 (161)
332 2f6m_A Suppressor protein STP2 35.8 49 0.0017 21.0 3.7 43 116-158 5-47 (65)
333 3jxi_A Vanilloid receptor-rela 35.6 38 0.0013 28.5 4.5 21 225-245 10-30 (260)
334 2wvi_A Mitotic checkpoint seri 35.1 1.6E+02 0.0054 23.0 11.3 52 236-288 79-130 (164)
335 3ygs_P Procaspase 9; apoptosis 34.9 1.1E+02 0.0037 21.3 5.9 62 135-202 26-87 (97)
336 4ets_A Ferric uptake regulatio 34.4 1.4E+02 0.0048 23.1 7.2 56 391-447 28-85 (162)
337 3mwm_A ZUR, putative metal upt 33.2 64 0.0022 24.3 4.9 40 441-480 23-62 (139)
338 2o03_A Probable zinc uptake re 33.0 71 0.0024 23.6 5.1 37 444-480 23-59 (131)
339 2rg8_A Programmed cell death p 32.9 1.3E+02 0.0045 23.4 6.7 26 363-388 12-37 (165)
340 2keb_A DNA polymerase subunit 32.8 1.3E+02 0.0043 21.1 6.9 32 379-410 27-58 (101)
341 2rfa_A Transient receptor pote 32.3 1.7E+02 0.0059 23.6 8.1 25 403-427 158-182 (232)
342 1s6c_A KV4 potassium channel-i 32.2 1.7E+02 0.0059 22.5 13.0 26 254-279 156-181 (183)
343 3t8k_A Uncharacterized protein 31.5 1.9E+02 0.0065 22.7 9.2 28 261-288 42-69 (186)
344 1bpo_A Protein (clathrin); cla 30.7 1.2E+02 0.004 28.4 6.8 141 92-243 342-482 (494)
345 2dod_A Transcription elongatio 30.2 60 0.002 21.9 3.6 36 232-269 15-50 (82)
346 2d2s_A Exocyst complex compone 28.3 2.6E+02 0.0089 23.3 11.4 28 395-422 90-117 (235)
347 4gq2_M Nucleoporin NUP120; bet 27.8 4E+02 0.014 27.8 11.2 109 188-303 816-950 (950)
348 2xig_A Ferric uptake regulatio 27.8 2E+02 0.0068 21.8 7.9 59 137-195 16-74 (150)
349 1mzb_A Ferric uptake regulatio 27.6 1.9E+02 0.0064 21.4 6.7 57 139-195 9-66 (136)
350 2f6m_A Suppressor protein STP2 27.1 1.1E+02 0.0038 19.4 4.2 46 149-195 4-49 (65)
351 4gq2_M Nucleoporin NUP120; bet 26.8 3.4E+02 0.012 28.4 10.5 131 223-375 816-950 (950)
352 1uzc_A Hypothetical protein FL 26.3 65 0.0022 20.9 3.2 34 232-267 13-46 (71)
353 3aji_A 26S proteasome non-ATPa 25.4 1.7E+02 0.0057 23.6 6.7 11 197-207 17-27 (231)
354 4b4t_S RPN3, 26S proteasome re 25.3 4.5E+02 0.015 25.1 11.4 66 325-390 230-299 (523)
355 2fe3_A Peroxide operon regulat 25.2 2.2E+02 0.0075 21.4 7.9 58 138-195 12-69 (145)
356 2w57_A Ferric uptake regulatio 25.0 2.2E+02 0.0074 21.6 6.7 58 138-195 7-65 (150)
357 3bu8_A Telomeric repeat-bindin 25.0 2.9E+02 0.0098 22.7 13.3 47 199-245 88-142 (235)
358 3ygs_P Procaspase 9; apoptosis 24.9 97 0.0033 21.5 4.2 15 256-270 70-84 (97)
359 3aji_A 26S proteasome non-ATPa 24.8 2E+02 0.0069 23.1 7.2 19 154-172 10-28 (231)
360 2jul_A Calsenilin; EF-hand, ca 24.6 3E+02 0.01 22.8 11.7 25 290-314 230-254 (256)
361 2p1h_A APAF-1, apoptotic prote 24.4 1.7E+02 0.0059 19.9 7.1 55 134-195 26-80 (94)
362 1bd8_A P19INK4D CDK4/6 inhibit 23.6 1.2E+02 0.0042 22.5 5.2 18 225-242 7-24 (156)
363 3eyy_A Putative iron uptake re 23.4 2.1E+02 0.0072 21.5 6.3 56 139-195 10-65 (145)
364 2qx5_A Nucleoporin NIC96; mRNA 23.3 5.5E+02 0.019 25.4 22.6 351 118-499 157-616 (661)
365 2pnn_A Transient receptor pote 21.6 62 0.0021 27.4 3.3 20 474-495 238-257 (273)
366 2chq_A Replication factor C sm 21.5 3.8E+02 0.013 22.9 14.6 30 150-180 231-261 (319)
367 1wty_A Hypothetical protein TT 21.5 2.3E+02 0.008 20.4 7.2 66 342-413 4-70 (119)
368 3u61_B DNA polymerase accessor 21.0 4.1E+02 0.014 23.0 9.0 17 159-175 248-264 (324)
369 2ijq_A Hypothetical protein; s 20.9 3E+02 0.01 21.3 8.1 60 399-459 36-103 (161)
370 3pvs_A Replication-associated 20.8 5.1E+02 0.017 24.0 14.4 140 269-427 166-326 (447)
371 3qil_A Clathrin heavy chain 1; 20.3 67 0.0023 23.5 2.5 49 294-347 37-85 (125)
372 3utm_A Tankyrase-1; tankyrase, 20.2 4.2E+02 0.014 22.8 11.4 19 153-171 27-45 (351)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.1e-35 Score=296.75 Aligned_cols=403 Identities=10% Similarity=0.005 Sum_probs=329.9
Q ss_pred CCCCHHHHHHHHH--hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCC-----------
Q 010830 77 IIPTPDLVHEVLQ--LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG----------- 143 (499)
Q Consensus 77 ~~~~~~~~~~~l~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----------- 143 (499)
..|+...+..+.. ...|++++|..+|+.+.. .+++..+++.++.+|.+.|++++|+++|+++....
T Consensus 113 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 191 (597)
T 2xpi_A 113 ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL-YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLM 191 (597)
T ss_dssp HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG-GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------C
T ss_pred hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccc
Confidence 3455555554444 346788888888887643 46778888888888888888888888887432221
Q ss_pred -----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHH------------------------------
Q 010830 144 -----VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSL------------------------------ 188 (499)
Q Consensus 144 -----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l------------------------------ 188 (499)
..+..+|+.++.+|.+.|++++|.++|++|.+.+ +.+...+..+
T Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 270 (597)
T 2xpi_A 192 QDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAF 270 (597)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHH
T ss_pred cccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHH
Confidence 1246788888888888888888888888887653 1123332222
Q ss_pred --------HHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHH
Q 010830 189 --------LSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF 260 (499)
Q Consensus 189 --------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~l 260 (499)
+..|.+. |++++|.++|+++.+. +++..+++.++.+|.+.|++++|.++|+++.+. .|++..+|+.+
T Consensus 271 ~~~~~~~~~~~~~~~-g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l 345 (597)
T 2xpi_A 271 LRSLYMLKLNKTSHE-DELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEI---DPYNLDVYPLH 345 (597)
T ss_dssp HHHHHHTTSCTTTTH-HHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCCTTHHHH
T ss_pred HHHHHHHHHHHHcCc-chHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc---CcccHHHHHHH
Confidence 3445566 7888888888887654 578999999999999999999999999999764 46677789999
Q ss_pred HHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCC
Q 010830 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND 340 (499)
Q Consensus 261 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 340 (499)
+.++.+.|++++|.++++++.+.. +.+..++..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|
T Consensus 346 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g 421 (597)
T 2xpi_A 346 LASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD---PQFGPAWIGFAHSFAIEG 421 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcC
Confidence 999999999999999999998643 4568889999999999999999999999998864 457889999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHH
Q 010830 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 420 (499)
Q Consensus 341 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 420 (499)
++++|+++|+++.+.+ ..+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++|+
T Consensus 422 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 499 (597)
T 2xpi_A 422 EHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQ 499 (597)
T ss_dssp CHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999998863 3477899999999999999999999999998864 3478899999999999999999999999
Q ss_pred HHHHC----CCCCh--HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc--hHHHHHHHHH
Q 010830 421 YILEN----GILPL--EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS--MRDIFDSLER 492 (499)
Q Consensus 421 ~m~~~----~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~--a~~~~~~~~~ 492 (499)
++.+. +..|+ ..+|..+..+|.+.|++++|.++++++.+.+ +.+..+|..+...|.+.|++ |.+.++++++
T Consensus 500 ~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 500 NALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp HHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 99875 66787 7899999999999999999999999998875 34789999999999999998 8899888876
Q ss_pred H
Q 010830 493 R 493 (499)
Q Consensus 493 ~ 493 (499)
.
T Consensus 579 ~ 579 (597)
T 2xpi_A 579 I 579 (597)
T ss_dssp H
T ss_pred c
Confidence 5
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2e-33 Score=283.53 Aligned_cols=402 Identities=11% Similarity=-0.059 Sum_probs=348.0
Q ss_pred CCHHHHHHHHH--hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 010830 79 PTPDLVHEVLQ--LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDS 156 (499)
Q Consensus 79 ~~~~~~~~~l~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~ 156 (499)
++...+..++. ...|++++|+.+|+.+.. ..|+..++..++.+|.+.|++++|..+|+.+... .++..+++.++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLD-ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHh-hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHH
Confidence 45666677776 457899999999998864 5568899999999999999999999999988544 4688899999999
Q ss_pred HHhcCChhHHHHHHHHHH-hC--------------CCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHH
Q 010830 157 YCGAGKYDEAVMSFDVMS-MH--------------GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221 (499)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~-~~--------------g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 221 (499)
|.+.|++++|.++|+++. .. |...+..+|+.++.+|.+. |++++|.++|+++.+..+.+...+.
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~ 238 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNL-SNFDRAKECYKEALMVDAKCYEAFD 238 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCchhhHHHH
Confidence 999999999999999542 21 2344688999999999999 9999999999999875444555444
Q ss_pred HH--------------------------------------HHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHH
Q 010830 222 IL--------------------------------------LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT 263 (499)
Q Consensus 222 ~l--------------------------------------l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~ 263 (499)
.+ +..|.+.|++++|.++|+++.+. |++..+|+.++.+
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~l~~~ 314 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL----EKSSDLLLCKADT 314 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG----GGCHHHHHHHHHH
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC----CchHHHHHHHHHH
Confidence 33 55667889999999999999653 4488999999999
Q ss_pred HhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChH
Q 010830 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343 (499)
Q Consensus 264 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 343 (499)
|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|+.++|.++++++.+.. +.+..+|+.++..|.+.|+++
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~ 390 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH---PEKAVTWLAVGIYYLCVNKIS 390 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTSHHHHHHHHHHHHHTTCHH
T ss_pred HHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC---cccHHHHHHHHHHHHHhccHH
Confidence 999999999999999998765 3377889999999999999999999999999764 568999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHH
Q 010830 344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 423 (499)
Q Consensus 344 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 423 (499)
+|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.
T Consensus 391 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
T 2xpi_A 391 EARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSY 468 (597)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999998742 2357899999999999999999999999999865 3478899999999999999999999999999
Q ss_pred HCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHc----CCccC--HHHHHHHHHHHHhcccc--hHHHHHHHHHHH
Q 010830 424 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR----RILIY--EVTMHKLKKAFYNESRS--MRDIFDSLERRC 494 (499)
Q Consensus 424 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~p~--~~~~~~ll~~~~~~g~~--a~~~~~~~~~~~ 494 (499)
+.. ..+..+|+.+...|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+.|+. |.+.++++++..
T Consensus 469 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 469 ALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 754 347889999999999999999999999999876 66787 78999999999999999 999999887753
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=8.3e-33 Score=268.02 Aligned_cols=203 Identities=16% Similarity=0.184 Sum_probs=143.3
Q ss_pred HHHHHHhhCCCCCC-HhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCC---------hHH
Q 010830 275 KFLRVMKGENCFPT-LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD---------VDN 344 (499)
Q Consensus 275 ~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---------~~~ 344 (499)
.+.+++.+.+.... ...++.+|++|++.|++++|.++|++|.+.| +.||..+||+||.+|++.+. +++
T Consensus 11 ~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~G--v~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 11 NLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNG--VQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp -------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT--CCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 33444444444332 2235555566666666666666666666655 56666666666666654433 577
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 010830 345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 424 (499)
Q Consensus 345 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 424 (499)
|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhc
Q 010830 425 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 479 (499)
Q Consensus 425 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 479 (499)
.|+.||..+|++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|...
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888888888888888888888888877654
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=2.4e-32 Score=264.79 Aligned_cols=186 Identities=17% Similarity=0.232 Sum_probs=106.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCC---------HHHHHHHHHHHhhCCCCCCH
Q 010830 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ---------VDEALKFLRVMKGENCFPTL 289 (499)
Q Consensus 219 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~---------~~~a~~~~~~m~~~~~~p~~ 289 (499)
.++.+|++|++.|++++|.++|++|.+. |+.| |..+||+||.+|++.+. +++|.++|++|.+.|+.||.
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~-Gv~p-d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRN-GVQL-SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHH-TCCC-CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCC-CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 4555556666666666666666666554 5555 55556666655554432 45555555555555555555
Q ss_pred hhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 010830 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFE 369 (499)
Q Consensus 290 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 369 (499)
.||+++|.+|++.|++++|.++|++|.+.| +.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||++||.
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g--~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~ 183 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFG--IQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLK 183 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 555555555555555555555555555555 555555555555555555555555555555555555555555555555
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhc
Q 010830 370 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408 (499)
Q Consensus 370 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 408 (499)
+|++.|++++|.++|++|.+.|..|+..||+.++..|+.
T Consensus 184 ~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 184 VSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 555555555555555555555555555555555555544
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.5e-27 Score=227.16 Aligned_cols=378 Identities=11% Similarity=0.061 Sum_probs=329.6
Q ss_pred hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010830 90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS 169 (499)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 169 (499)
...|++++|.+.++.+.+..+.+...+..+...+.+.|++++|...++...+..+.+..+|..+...|.+.|++++|.+.
T Consensus 10 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 89 (388)
T 1w3b_A 10 YQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEH 89 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 45789999999999887777788889999999999999999999999999999888999999999999999999999999
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCC
Q 010830 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW 249 (499)
Q Consensus 170 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 249 (499)
|+++.+.. +.+..+|..+..++... |++++|...|+++.+..+.+...+..+...+...|++++|.+.|+++.+.
T Consensus 90 ~~~al~~~-p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--- 164 (388)
T 1w3b_A 90 YRHALRLK-PDFIDGYINLAAALVAA-GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--- 164 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHH-SCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH---
T ss_pred HHHHHHcC-cchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---
Confidence 99998763 33566799999999999 99999999999988766667788889999999999999999999999765
Q ss_pred CCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHH
Q 010830 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY 329 (499)
Q Consensus 250 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 329 (499)
.|++..+|..+...+.+.|++++|+..|+++.+.+ +.+...+..+...+...|++++|...+++..+.. +.+..++
T Consensus 165 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~ 240 (388)
T 1w3b_A 165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS---PNHAVVH 240 (388)
T ss_dssp CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC---TTCHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---cCCHHHH
Confidence 78788899999999999999999999999998865 2356788889999999999999999999999864 4468899
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcc
Q 010830 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 409 (499)
Q Consensus 330 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 409 (499)
..+...|.+.|++++|.+.|+++.+.+. .+..+|..+...+.+.|++++|...|+++.+.. +.+..++..+...+...
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHc
Confidence 9999999999999999999999998532 246789999999999999999999999998864 45788999999999999
Q ss_pred CChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcc
Q 010830 410 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 480 (499)
Q Consensus 410 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 480 (499)
|++++|.+.++++.+.. +.+..++..+..+|.+.|++++|...++++.+.. +-+...+..+...+...|
T Consensus 319 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHcc
Confidence 99999999999998743 4457789999999999999999999999999653 224556666666655544
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=2e-26 Score=219.42 Aligned_cols=361 Identities=12% Similarity=0.029 Sum_probs=320.2
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCc
Q 010830 119 MVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198 (499)
Q Consensus 119 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 198 (499)
+...+.+.|++++|.+.++.+.+..+.+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+. |+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~-g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKER-GQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH-TC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHC-CC
Confidence 34567889999999999999999988888899999999999999999999999987753 56788999999999999 99
Q ss_pred hHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHH
Q 010830 199 TSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278 (499)
Q Consensus 199 ~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~ 278 (499)
+++|...|+++.+..+.+..+|..+...+.+.|++++|.+.|+++.+. .|++...+..+...+...|++++|.+.|+
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY---NPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH---CTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 999999999998766667888999999999999999999999999764 78778889999999999999999999999
Q ss_pred HHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC
Q 010830 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAF 358 (499)
Q Consensus 279 ~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 358 (499)
++.+.. +-+..++..+...+...|++++|...|+++.+.+ +.+...|..+...+...|++++|...|++..+.. +
T Consensus 160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p 234 (388)
T 1w3b_A 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD---PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-P 234 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-T
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-c
Confidence 998754 2357789999999999999999999999999875 4568899999999999999999999999988742 2
Q ss_pred CCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHH
Q 010830 359 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 438 (499)
Q Consensus 359 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 438 (499)
-+..++..+...+...|++++|...|+++.+.. +.+..++..+...+.+.|++++|.+.++++.+.. +.+..++..+.
T Consensus 235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 312 (388)
T 1w3b_A 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLA 312 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHH
Confidence 256889999999999999999999999999865 2356789999999999999999999999999854 55778999999
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc--hHHHHHHHHH
Q 010830 439 VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS--MRDIFDSLER 492 (499)
Q Consensus 439 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~--a~~~~~~~~~ 492 (499)
..+.+.|++++|...++++.+.. +.+..++..+...+.+.|+. |.+.++++++
T Consensus 313 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 313 NIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999998753 34578899999999999999 9899888775
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=2.2e-23 Score=202.50 Aligned_cols=362 Identities=11% Similarity=0.036 Sum_probs=254.7
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHH
Q 010830 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS 187 (499)
Q Consensus 108 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 187 (499)
..+.+...|..+...+.+.|++++|+.+|+.+.+..+.+..+|..+..+|...|++++|.+.|+.+.+.+ +.+..++..
T Consensus 21 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 99 (450)
T 2y4t_A 21 QSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQ 99 (450)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHH
Confidence 4555667777788888888888888888888877777777788888888888888888888888877654 345667777
Q ss_pred HHHHHHccCCchHHHHHHHHHHhccCCCCH---HHHHHH------------HHHHHhcCCHHHHHHHHHHHhHccCCCCc
Q 010830 188 LLSAICRQENQTSRALEFLNRVKKIVDPDG---DSFAIL------------LEGWEKEGNVEEANKTFGEMVERFEWNPE 252 (499)
Q Consensus 188 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 252 (499)
+...+... |++++|...|+++.+..+.+. ..+..+ ...+.+.|++++|.+.|+++.+. .|.
T Consensus 100 l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~ 175 (450)
T 2y4t_A 100 RGHLLLKQ-GKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV---CVW 175 (450)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTT
T ss_pred HHHHHHHc-CCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC
Confidence 77777777 888888888887766544444 555555 33477888888888888888654 566
Q ss_pred hHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHH
Q 010830 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAV 332 (499)
Q Consensus 253 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 332 (499)
+...+..+..+|.+.|++++|++.|+++.+.. +.+..++..+..+|...|++++|...++++.+.. +.+...+..+
T Consensus 176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~~ 251 (450)
T 2y4t_A 176 DAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD---QDHKRCFAHY 251 (450)
T ss_dssp CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CChHHHHHHH
Confidence 77778888888888888888888888877643 2356777888888888888888888888887753 3344555444
Q ss_pred ------------HHHHHcCCChHHHHHHHHHHHHCCCCCC-----HHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC
Q 010830 333 ------------IGLLCNNDDVDNVFRFFDQMVFHGAFPD-----SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 395 (499)
Q Consensus 333 ------------i~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~ 395 (499)
...|.+.|++++|...|+++.+. .|+ ...|..+...+.+.|++++|...++++.+.. +.+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~ 328 (450)
T 2y4t_A 252 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDN 328 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccc
Confidence 67788888888888888888773 344 3467777788888888888888888887653 235
Q ss_pred hhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHH------------HHhCC-----ChHHHHHHHHHH-
Q 010830 396 PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG------------LRNLG-----RLSDVRRFAEEM- 457 (499)
Q Consensus 396 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~------------~~~~g-----~~~~a~~~~~~m- 457 (499)
..++..+..+|...|++++|...++++.+.. +-+...+..+..+ |...| +.+++.+.++++
T Consensus 329 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~ 407 (450)
T 2y4t_A 329 VNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLA 407 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHH
Confidence 6778888888888888888888888887732 1234444444422 33334 556777777763
Q ss_pred HHcC--CccC-------HHHHHHHHHHHHhcccc
Q 010830 458 LNRR--ILIY-------EVTMHKLKKAFYNESRS 482 (499)
Q Consensus 458 ~~~~--~~p~-------~~~~~~ll~~~~~~g~~ 482 (499)
.+.. ..++ ...+..+..+|...|+.
T Consensus 408 l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~ 441 (450)
T 2y4t_A 408 LQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDP 441 (450)
T ss_dssp HHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGG
T ss_pred HHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCH
Confidence 3221 1122 23666677777766665
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=2.8e-22 Score=194.69 Aligned_cols=345 Identities=12% Similarity=0.060 Sum_probs=281.0
Q ss_pred hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010830 90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS 169 (499)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 169 (499)
...|+++.|+.+|+.+....+.+..+|..+...+.+.|++++|++.|+.+.+.++.+..++..+...|.+.|++++|.+.
T Consensus 37 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 116 (450)
T 2y4t_A 37 LAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDD 116 (450)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 45789999999999988777788999999999999999999999999999999988899999999999999999999999
Q ss_pred HHHHHhCCCCcCH----HHHHHHH------------HHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCH
Q 010830 170 FDVMSMHGVEQDV----VAVNSLL------------SAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233 (499)
Q Consensus 170 ~~~m~~~g~~p~~----~~~~~ll------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 233 (499)
|+.+.+. .|+. ..+..+. ..+... |++++|..+|+++.+..+.+..++..+...|.+.|++
T Consensus 117 ~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 193 (450)
T 2y4t_A 117 FKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGS-GDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEP 193 (450)
T ss_dssp HHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCG
T ss_pred HHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCH
Confidence 9999876 4543 4555553 337778 9999999999999887777899999999999999999
Q ss_pred HHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCC-HhhHHHH------------HHHHH
Q 010830 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT-LKFFSNA------------LDILV 300 (499)
Q Consensus 234 ~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l------------i~~~~ 300 (499)
++|.+.|+++.+. .|++..+|..+...|...|++++|+..|+++.+.. |+ ...+..+ ...|.
T Consensus 194 ~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (450)
T 2y4t_A 194 RKAISDLKAASKL---KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELI 268 (450)
T ss_dssp GGGHHHHHHHHHH---HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999764 56688899999999999999999999999998653 43 3334333 78899
Q ss_pred HcCCHhHHHHHHHHHHhcCCCCCCC-----HhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 010830 301 KLNDSTHAVQLWDIMVGIGFNLMPN-----LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 375 (499)
Q Consensus 301 ~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 375 (499)
+.|++++|...|+.+.+.. |+ ...|..+...+.+.|++++|+..++++.+.. +.+...|..+..+|...|
T Consensus 269 ~~g~~~~A~~~~~~~l~~~----p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~ 343 (450)
T 2y4t_A 269 RDGRYTDATSKYESVMKTE----PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEE 343 (450)
T ss_dssp HHTCHHHHHHHHHHHHHHC----CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHhcC----CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhc
Confidence 9999999999999999864 43 4578999999999999999999999998752 236789999999999999
Q ss_pred CHhHHHHHHHHHHHCCCCCChhhHHHHHH------------HHhccC-----ChhHHHHHHHHH-HHCCCCCh-------
Q 010830 376 RVHEVEKFFHEMIKNEWQPTPLNCATAIT------------MLLDAD-----EPEIAIEIWNYI-LENGILPL------- 430 (499)
Q Consensus 376 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~------------~~~~~g-----~~~~a~~~~~~m-~~~~~~p~------- 430 (499)
++++|...|+++.+.. +-+...+..+.. .|...| +.+++.+.++++ .+. .||
T Consensus 344 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~--~pd~~~~~~~ 420 (450)
T 2y4t_A 344 MYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQW--HPDNFQNEEE 420 (450)
T ss_dssp CHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHS--CGGGCCSHHH
T ss_pred CHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHh--CCCCCCCchH
Confidence 9999999999999853 224455555552 233344 566777777763 332 222
Q ss_pred ----HHHHHHHHHHHHhCCChHHH
Q 010830 431 ----EASANELLVGLRNLGRLSDV 450 (499)
Q Consensus 431 ----~~~~~~ll~~~~~~g~~~~a 450 (499)
...+..+..+|-..++.+++
T Consensus 421 ~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 421 KKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp HHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHH
Confidence 23555566666666665543
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=5.7e-22 Score=195.85 Aligned_cols=359 Identities=12% Similarity=0.055 Sum_probs=280.4
Q ss_pred hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010830 90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS 169 (499)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 169 (499)
...|++++|+..|+.+.... |+..+|..+..++.+.|++++|++.|+++.+.++.+..+|..+..+|...|++++|...
T Consensus 17 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 95 (514)
T 2gw1_A 17 FRNKKYDDAIKYYNWALELK-EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFD 95 (514)
T ss_dssp HHTSCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhcC-ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 45789999999999887633 68999999999999999999999999999999888899999999999999999999999
Q ss_pred HHHHHhCCCCcC--------------------------------------------------------------------
Q 010830 170 FDVMSMHGVEQD-------------------------------------------------------------------- 181 (499)
Q Consensus 170 ~~~m~~~g~~p~-------------------------------------------------------------------- 181 (499)
|+.+.+.+ +++
T Consensus 96 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (514)
T 2gw1_A 96 LSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPE 174 (514)
T ss_dssp HHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCC
T ss_pred HHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHH
Confidence 99987664 111
Q ss_pred -----------HHHHHHHHHHHHc---cCCchHHHHHHHHHHhc-----c--C-------CCCHHHHHHHHHHHHhcCCH
Q 010830 182 -----------VVAVNSLLSAICR---QENQTSRALEFLNRVKK-----I--V-------DPDGDSFAILLEGWEKEGNV 233 (499)
Q Consensus 182 -----------~~~~~~ll~~~~~---~~~~~~~a~~~~~~~~~-----~--~-------~~~~~~~~~ll~~~~~~g~~ 233 (499)
...+......+.. . |++++|..+|+++.+ . . +.+..++..+...+...|++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (514)
T 2gw1_A 175 LTFANYDESNEADKELMNGLSNLYKRSP-ESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDP 253 (514)
T ss_dssp CCCSSCCSSCHHHHHHHHHHHHHSSCCT-THHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHhhhh-ccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCH
Confidence 1222222222222 5 888888888888755 1 1 23456777888888888899
Q ss_pred HHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHH
Q 010830 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313 (499)
Q Consensus 234 ~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 313 (499)
++|.+.|+++.+. .|. ...|..+...+...|++++|++.++++.+.. +.+...+..+...+...|++++|...++
T Consensus 254 ~~A~~~~~~~l~~---~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 328 (514)
T 2gw1_A 254 LGAHEDIKKAIEL---FPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFD 328 (514)
T ss_dssp HHHHHHHHHHHHH---CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhh---Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9998888888664 554 6778888888888888888888888887654 2356677788888888888899988888
Q ss_pred HHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 010830 314 IMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393 (499)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 393 (499)
++.+.. +.+...+..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+....
T Consensus 329 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 404 (514)
T 2gw1_A 329 KAKELD---PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK 404 (514)
T ss_dssp HHHHTC---SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHhC---hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 888764 4466788888888888888999988888887742 224567788888888888988888888888764211
Q ss_pred -CC----hhhHHHHHHHHhc---cCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 010830 394 -PT----PLNCATAITMLLD---ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461 (499)
Q Consensus 394 -p~----~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 461 (499)
++ ...+..+...+.. .|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|...+++..+.+
T Consensus 405 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 405 LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 11 2377788888888 888888888888887754 3356677778888888899999988888888654
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=5.7e-22 Score=195.81 Aligned_cols=371 Identities=12% Similarity=0.020 Sum_probs=308.0
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 010830 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI 192 (499)
Q Consensus 113 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 192 (499)
...|......+.+.|++++|+..|+++.+.+ |+..+|..+..+|.+.|++++|.+.|+++.+.+ +.+..++..+..++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK-EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 4567778899999999999999999999987 489999999999999999999999999998764 45667889999999
Q ss_pred HccCCchHHHHHHHHHHhccCCCC--------------------------------------------------------
Q 010830 193 CRQENQTSRALEFLNRVKKIVDPD-------------------------------------------------------- 216 (499)
Q Consensus 193 ~~~~~~~~~a~~~~~~~~~~~~~~-------------------------------------------------------- 216 (499)
... |++++|...|+++....+++
T Consensus 84 ~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGL-GKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHT-TCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHH-hhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 999 99999999999875533221
Q ss_pred -----------------------HHHHHHHHHHHHh---cCCHHHHHHHHHHHhHc----cCC-------CCchHHhHHH
Q 010830 217 -----------------------GDSFAILLEGWEK---EGNVEEANKTFGEMVER----FEW-------NPEHVLAYET 259 (499)
Q Consensus 217 -----------------------~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~----~~~-------~p~~~~~~~~ 259 (499)
...+......+.. .|++++|...|+++.+. ... .|.+..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 2333333333443 89999999999998761 011 1446778899
Q ss_pred HHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcC
Q 010830 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339 (499)
Q Consensus 260 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 339 (499)
+...+...|++++|...|+++.+.. |+...+..+..++...|++++|...++.+.+.. +.+...+..+...|...
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD---SNNSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC---TTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC---cCCHHHHHHHHHHHHHh
Confidence 9999999999999999999998765 337888889999999999999999999999874 45778899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHH
Q 010830 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 419 (499)
Q Consensus 340 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 419 (499)
|++++|...|++..+... .+...+..+...+...|++++|..+++.+.+.. +.+..++..+...+...|++++|...+
T Consensus 318 ~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp TCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999988532 256788889999999999999999999998854 335678889999999999999999999
Q ss_pred HHHHHCCCC-Ch----HHHHHHHHHHHHh---CCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc--hHHHHHH
Q 010830 420 NYILENGIL-PL----EASANELLVGLRN---LGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS--MRDIFDS 489 (499)
Q Consensus 420 ~~m~~~~~~-p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~--a~~~~~~ 489 (499)
+.+.+.... ++ ...+..+...+.+ .|++++|...++++.+.. +.+..++..+...+.+.|+. |.+.++.
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 474 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEE 474 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 998863211 11 3388888999999 999999999999998764 33677888999999999998 8888888
Q ss_pred HHHHH
Q 010830 490 LERRC 494 (499)
Q Consensus 490 ~~~~~ 494 (499)
.++..
T Consensus 475 a~~~~ 479 (514)
T 2gw1_A 475 SADLA 479 (514)
T ss_dssp HHHHC
T ss_pred HHHhc
Confidence 87653
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=2.6e-20 Score=185.10 Aligned_cols=362 Identities=12% Similarity=0.080 Sum_probs=279.0
Q ss_pred hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010830 90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS 169 (499)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 169 (499)
...|+++.|+..|+.+....+.+..+|..+..++.+.|++++|++.|+++.+.++.+..++..+...+...|++++|.+.
T Consensus 36 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 115 (537)
T 3fp2_A 36 FTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFD 115 (537)
T ss_dssp HHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 45789999999999988877889999999999999999999999999999999988999999999999999999999999
Q ss_pred HHHHHhCCC------------------------------------CcCHH------------------------------
Q 010830 170 FDVMSMHGV------------------------------------EQDVV------------------------------ 183 (499)
Q Consensus 170 ~~~m~~~g~------------------------------------~p~~~------------------------------ 183 (499)
|+.+....- .|+..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (537)
T 3fp2_A 116 LSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYAL 195 (537)
T ss_dssp HHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHH
T ss_pred HHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHH
Confidence 964421110 01111
Q ss_pred HHHHHHHHHHcc-------CCchHHHHHHHHHHhccCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHhHccCC
Q 010830 184 AVNSLLSAICRQ-------ENQTSRALEFLNRVKKIVDPDGD-------SFAILLEGWEKEGNVEEANKTFGEMVERFEW 249 (499)
Q Consensus 184 ~~~~ll~~~~~~-------~~~~~~a~~~~~~~~~~~~~~~~-------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 249 (499)
....+...+... .+++++|..+++++.+..+.+.. ++..+...+...|++++|.+.|++..+.
T Consensus 196 ~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--- 272 (537)
T 3fp2_A 196 LSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--- 272 (537)
T ss_dssp HHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc---
Confidence 111111111111 13678888888887765544433 4666777888889999999999998764
Q ss_pred CCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHH
Q 010830 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY 329 (499)
Q Consensus 250 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 329 (499)
.|+ ...|..+...+...|++++|++.++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...|
T Consensus 273 ~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~ 347 (537)
T 3fp2_A 273 HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN---PENVYPY 347 (537)
T ss_dssp CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCSHHH
T ss_pred CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCCHHHH
Confidence 664 6788889999999999999999999887754 2356788888899999999999999999998864 4456788
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-----CCChhhHHHHHH
Q 010830 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW-----QPTPLNCATAIT 404 (499)
Q Consensus 330 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~p~~~~~~~li~ 404 (499)
..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|...|+++.+... ......+.....
T Consensus 348 ~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~ 426 (537)
T 3fp2_A 348 IQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKAT 426 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHH
Confidence 889999999999999999999988753 23466788888899999999999999998876421 111122334455
Q ss_pred HHhcc----------CChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 010830 405 MLLDA----------DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 461 (499)
Q Consensus 405 ~~~~~----------g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 461 (499)
.+... |++++|...++++.+.. +.+...+..+...|.+.|++++|.+.+++..+..
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 427 ILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 66666 99999999999988754 3456778888899999999999999999988754
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=2.8e-20 Score=184.86 Aligned_cols=369 Identities=12% Similarity=0.012 Sum_probs=295.6
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 010830 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI 192 (499)
Q Consensus 113 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 192 (499)
...|..+...+.+.|++++|++.|+++.+.++.+..+|..+..+|.+.|++++|++.|+++.+.+ +.+..++..+...+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 45778888999999999999999999999998899999999999999999999999999998764 45677888888899
Q ss_pred HccCCchHHHHHHHHHHhccCC-------------------------------------CCHH-----------------
Q 010830 193 CRQENQTSRALEFLNRVKKIVD-------------------------------------PDGD----------------- 218 (499)
Q Consensus 193 ~~~~~~~~~a~~~~~~~~~~~~-------------------------------------~~~~----------------- 218 (499)
... |++++|...|+.+..... |+..
T Consensus 104 ~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (537)
T 3fp2_A 104 ESL-GNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182 (537)
T ss_dssp HHH-TCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred HHc-CCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence 999 999999999865422110 1100
Q ss_pred -------------HHHHHHHHHHh--------cCCHHHHHHHHHHHhHccCCCCchHH-------hHHHHHHHHhcCCCH
Q 010830 219 -------------SFAILLEGWEK--------EGNVEEANKTFGEMVERFEWNPEHVL-------AYETFLITLIRGKQV 270 (499)
Q Consensus 219 -------------~~~~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~p~~~~-------~~~~li~~~~~~~~~ 270 (499)
....+...+.. .|++++|..+|+++.+. .|++.. ++..+...+...|++
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~ 259 (537)
T 3fp2_A 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA---NTVDDPLRENAALALCYTGIFHFLKNNL 259 (537)
T ss_dssp SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH---CCCcchhhHHHHHHHHHHHHHHHhcccH
Confidence 11122222211 24788999999998654 665433 467777888999999
Q ss_pred HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHH
Q 010830 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD 350 (499)
Q Consensus 271 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 350 (499)
++|.+.|++..+.. |+...+..+...+...|++++|...++.+.+.. +.+..+|..+...|...|++++|...|+
T Consensus 260 ~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 260 LDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN---PEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp HHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC---CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999998865 567888889999999999999999999999875 5578899999999999999999999999
Q ss_pred HHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCC----
Q 010830 351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG---- 426 (499)
Q Consensus 351 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---- 426 (499)
+..+... .+...|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|.+.++++.+..
T Consensus 335 ~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 335 KAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 9988532 246788899999999999999999999998864 3456788899999999999999999999987532
Q ss_pred -CCChHHHHHHHHHHHHhC----------CChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc--hHHHHHHHHHH
Q 010830 427 -ILPLEASANELLVGLRNL----------GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS--MRDIFDSLERR 493 (499)
Q Consensus 427 -~~p~~~~~~~ll~~~~~~----------g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~--a~~~~~~~~~~ 493 (499)
.......+..+...+.+. |++++|...+++..+.. +.+...+..+...+.+.|+. |.+.++..++.
T Consensus 413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 111222344445667777 99999999999999764 34678899999999999998 99999888775
Q ss_pred H
Q 010830 494 C 494 (499)
Q Consensus 494 ~ 494 (499)
.
T Consensus 492 ~ 492 (537)
T 3fp2_A 492 A 492 (537)
T ss_dssp C
T ss_pred C
Confidence 3
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=1.6e-19 Score=169.30 Aligned_cols=315 Identities=10% Similarity=-0.005 Sum_probs=186.2
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 010830 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191 (499)
Q Consensus 112 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 191 (499)
|+..|..+...+.+.|++++|+..|+.+.+..+.+..++..+...+...|++++|.+.|+.+.+.. +.+...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 345666777777777888888888877777776677777777777777777777777777776552 2345666666666
Q ss_pred HHccCCchHHHHHHHHHHhccCC---CCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHhHccCCCCchHHh
Q 010830 192 ICRQENQTSRALEFLNRVKKIVD---PDGDSFAIL------------LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256 (499)
Q Consensus 192 ~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 256 (499)
+... |++++|...+++..+..+ .+...+..+ ...+...|++++|.+.++++.+. .|.+...
T Consensus 81 ~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~ 156 (359)
T 3ieg_A 81 LLKQ-GKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV---CVWDAEL 156 (359)
T ss_dssp HHHH-TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHH
T ss_pred HHHc-CChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCchHH
Confidence 6666 777777777777665443 344444443 45666667777777777766543 4555566
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHH
Q 010830 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLL 336 (499)
Q Consensus 257 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 336 (499)
+..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++...+.. +.+...+..+...
T Consensus 157 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~- 231 (359)
T 3ieg_A 157 RELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD---QDHKRCFAHYKQV- 231 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHH-
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---ccchHHHHHHHHH-
Confidence 6666666666677777776666666543 2345556666666666666666666666666543 2222222211000
Q ss_pred HcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCh----hhHHHHHHHHhccCCh
Q 010830 337 CNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP----LNCATAITMLLDADEP 412 (499)
Q Consensus 337 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~ 412 (499)
. .......+...+.+.|++++|...++++.+.... +. ..+..+...+...|++
T Consensus 232 ----------------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~ 288 (359)
T 3ieg_A 232 ----------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKP 288 (359)
T ss_dssp ----------------H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCH
T ss_pred ----------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCH
Confidence 0 0001112234455556666666666655553211 11 1233345555566666
Q ss_pred hHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 010830 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460 (499)
Q Consensus 413 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 460 (499)
++|.+.++...+.. +.+...+..+...+.+.|++++|...+++..+.
T Consensus 289 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 289 VEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 66666666665532 224455556666666666666666666666644
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=1.1e-18 Score=163.58 Aligned_cols=313 Identities=11% Similarity=0.040 Sum_probs=214.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 010830 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226 (499)
Q Consensus 147 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~ 226 (499)
+..+..+...+...|++++|.+.|+.+.+.. +.+..++..+...+... |++++|...++++.+..+.+...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAM-GKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 4556667777777777777777777776543 33455666666666666 777777777776655445556666677777
Q ss_pred HHhcCCHHHHHHHHHHHhHccCCCC---chHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcC
Q 010830 227 WEKEGNVEEANKTFGEMVERFEWNP---EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303 (499)
Q Consensus 227 ~~~~g~~~~a~~~~~~~~~~~~~~p---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 303 (499)
|...|++++|.+.|++..+ ..| ++...+..+...+. ...+..+...+...|
T Consensus 81 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~ 134 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLK---SNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGA 134 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTT
T ss_pred HHHcCChHHHHHHHHHHHh---cCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHcc
Confidence 7777777777777776643 244 44444443322110 011222345667777
Q ss_pred CHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHH
Q 010830 304 DSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383 (499)
Q Consensus 304 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 383 (499)
++++|.++++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...
T Consensus 135 ~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 210 (359)
T 3ieg_A 135 DYTAAITFLDKILEVC---VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSE 210 (359)
T ss_dssp CHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC---CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7788887777777664 4566777777777888888888888888777642 23566777777778888888888888
Q ss_pred HHHHHHCCCCCChhhHH------------HHHHHHhccCChhHHHHHHHHHHHCCCCChH---HHHHHHHHHHHhCCChH
Q 010830 384 FHEMIKNEWQPTPLNCA------------TAITMLLDADEPEIAIEIWNYILENGILPLE---ASANELLVGLRNLGRLS 448 (499)
Q Consensus 384 ~~~~~~~~~~p~~~~~~------------~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~g~~~ 448 (499)
++.+.+... .+...+. .+...+.+.|++++|...++++.+....... ..+..+...+.+.|+++
T Consensus 211 ~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 289 (359)
T 3ieg_A 211 VRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPV 289 (359)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHH
Confidence 887776431 2222222 2366788999999999999999875432111 23555778899999999
Q ss_pred HHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc--hHHHHHHHHHH
Q 010830 449 DVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS--MRDIFDSLERR 493 (499)
Q Consensus 449 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~--a~~~~~~~~~~ 493 (499)
+|...+++..+.. +.+..++..+...+.+.|+. |.+.++..++.
T Consensus 290 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 290 EAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999999863 33678999999999999998 88888887654
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=2.1e-18 Score=159.74 Aligned_cols=290 Identities=8% Similarity=-0.029 Sum_probs=176.1
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHH
Q 010830 109 QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSL 188 (499)
Q Consensus 109 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 188 (499)
.+.+...+..+...+...|++++|.++|+++.+.++.+...+..++..+...|++++|..+++++.+.. +.+...+..+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 445556667777777777888888888888777776666667777777777788888887777776642 3345566666
Q ss_pred HHHHHccCC-chHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcC
Q 010830 189 LSAICRQEN-QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267 (499)
Q Consensus 189 l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~ 267 (499)
...+... | ++++|...|++.....+.+...|..+...+...|++++|.+.|++..+. .|++...+..+...+...
T Consensus 97 ~~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 97 GCYYLMV-GHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL---MKGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHS-CSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCSHHHHHHHHHHHHT
T ss_pred HHHHHHh-hhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHH
Confidence 6666666 5 6777777777766555555666777777777777777777777776543 344445566666666666
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCC------CCCCCHhHHHHHHHHHHcCCC
Q 010830 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF------NLMPNLIMYNAVIGLLCNNDD 341 (499)
Q Consensus 268 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~~~li~~~~~~~~ 341 (499)
|++++|.+.+++..+.. +.+...+..+...+...|++++|...++++.+... ..+.+..++..+...|.+.|+
T Consensus 173 ~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 77777777666666543 22345555666666666666666666666554310 002223455555566666666
Q ss_pred hHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 010830 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406 (499)
Q Consensus 342 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 406 (499)
+++|...|++..+.. +.+...+..+...+...|++++|...|+++.+.. +.+...+..+..++
T Consensus 252 ~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 252 YAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 666666666555432 1234455555555555666666666655554432 12334444444444
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=2e-18 Score=159.89 Aligned_cols=296 Identities=9% Similarity=0.002 Sum_probs=245.6
Q ss_pred HHhcCCCCCHHHHHHHHHhhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHH
Q 010830 72 LACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFA 151 (499)
Q Consensus 72 l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 151 (499)
+...+..++............|+++.|+++|+.+....+.+...+..++..+...|++++|..+++++.+..+.+...|.
T Consensus 15 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 94 (330)
T 3hym_B 15 VDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWF 94 (330)
T ss_dssp -----CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred HhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHH
Confidence 33333344433333333355799999999999987777777888888999999999999999999999999888889999
Q ss_pred HHHHHHHhcC-ChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc
Q 010830 152 SIFDSYCGAG-KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230 (499)
Q Consensus 152 ~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 230 (499)
.+...+...| ++++|.+.|++..+.. +.+...+..+...+... |++++|...+++..+..+.+...+..+...|...
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVE-SEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 9999999999 9999999999998764 44577888899999999 9999999999998876667778888899999999
Q ss_pred CCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC--------CCCCHhhHHHHHHHHHHc
Q 010830 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN--------CFPTLKFFSNALDILVKL 302 (499)
Q Consensus 231 g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--------~~p~~~~~~~li~~~~~~ 302 (499)
|++++|.+.+++..+ ..|++...+..+...+...|++++|...+++..+.. ...+..++..+..++...
T Consensus 173 ~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 249 (330)
T 3hym_B 173 NNSKLAERFFSQALS---IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL 249 (330)
T ss_dssp TCHHHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHh
Confidence 999999999999955 477788899999999999999999999999887631 133456888999999999
Q ss_pred CCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC-CHHhHHHHHHHH-HhcCCH
Q 010830 303 NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFP-DSLTYNMIFECL-IKNKRV 377 (499)
Q Consensus 303 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~-~~~g~~ 377 (499)
|++++|...+++..+.. +.+...+..+...|.+.|++++|.+.|++..+. .| +...+..+..++ ...|+.
T Consensus 250 g~~~~A~~~~~~a~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 250 KKYAEALDYHRQALVLI---PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp TCHHHHHHHHHHHHHHS---TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHHHTTTTC-
T ss_pred cCHHHHHHHHHHHHhhC---ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhCch
Confidence 99999999999999875 457789999999999999999999999998874 34 556677776666 345554
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.83 E-value=1e-15 Score=149.88 Aligned_cols=339 Identities=12% Similarity=0.012 Sum_probs=285.8
Q ss_pred cCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh----cCCh
Q 010830 92 YDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGK----NGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCG----AGKY 163 (499)
Q Consensus 92 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~----~g~~ 163 (499)
.++.+.|...|+.+.+. -+..++..|...|.. .+++++|.+.|++..+.+ +...+..|...|.. .+++
T Consensus 56 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~ 131 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--LPQAQQNLGVMYHEGNGVKVDK 131 (490)
T ss_dssp CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCH
Confidence 57889999999887653 467889999999998 899999999999999886 66778888888888 8899
Q ss_pred hHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc----cCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHh----cCCHHH
Q 010830 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICR----QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK----EGNVEE 235 (499)
Q Consensus 164 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~ 235 (499)
++|.++|+...+.| +...+..+-..|.. . ++.++|..+|++..+. .+...+..+...|.. .++.++
T Consensus 132 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~-~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~ 205 (490)
T 2xm6_A 132 AESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVT-RDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAI 205 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHH
Confidence 99999999998865 56677777777776 5 8999999999988663 477888889999988 899999
Q ss_pred HHHHHHHHhHccCCCCchHHhHHHHHHHHhc----CCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHH----cCCHhH
Q 010830 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIR----GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK----LNDSTH 307 (499)
Q Consensus 236 a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~ 307 (499)
|.+.|++..+. + +...+..+...|.. .+++++|.++|++..+.| +...+..+-..|.. .++.++
T Consensus 206 A~~~~~~a~~~-~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~ 277 (490)
T 2xm6_A 206 SAQWYRKSATS-G----DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLK 277 (490)
T ss_dssp HHHHHHHHHHT-T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHH
T ss_pred HHHHHHHHHHC-C----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHH
Confidence 99999998774 3 45678888888886 789999999999988876 45667777777877 899999
Q ss_pred HHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcC-----CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC---CHhH
Q 010830 308 AVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN-----DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK---RVHE 379 (499)
Q Consensus 308 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~ 379 (499)
|..+|++..+.| +...+..+...|... +++++|+..|++..+.| +...+..+...|...| +.++
T Consensus 278 A~~~~~~a~~~~-----~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~ 349 (490)
T 2xm6_A 278 ALEWYRKSAEQG-----NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKK 349 (490)
T ss_dssp HHHHHHHHHTTT-----CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHH
T ss_pred HHHHHHHHHHcC-----CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHH
Confidence 999999998876 567788888888877 89999999999999864 5567777777787766 7899
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHhc----cCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHh----CCChHHHH
Q 010830 380 VEKFFHEMIKNEWQPTPLNCATAITMLLD----ADEPEIAIEIWNYILENGILPLEASANELLVGLRN----LGRLSDVR 451 (499)
Q Consensus 380 a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~ 451 (499)
|.+.|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..|-..|.+ .+++++|.
T Consensus 350 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~ 423 (490)
T 2xm6_A 350 AVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAW 423 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 999999999875 56788888888887 799999999999999876 45677778888887 89999999
Q ss_pred HHHHHHHHcCC
Q 010830 452 RFAEEMLNRRI 462 (499)
Q Consensus 452 ~~~~~m~~~~~ 462 (499)
..|++..+.+.
T Consensus 424 ~~~~~A~~~~~ 434 (490)
T 2xm6_A 424 AWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHCCC
Confidence 99999998764
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.82 E-value=2.2e-18 Score=162.41 Aligned_cols=300 Identities=8% Similarity=-0.069 Sum_probs=153.8
Q ss_pred CCchhHHH-HHHHhcCCCC----CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHH
Q 010830 93 DSPSSAVD-FFRWAGRGQR----LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAV 167 (499)
Q Consensus 93 ~~~~~a~~-~~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~ 167 (499)
++.+.|.. .|+......+ .+...+..+...+.+.|++++|...|+++.+..+.+..+|..+...|...|++++|.
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 118 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI 118 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 45555555 5554433111 123456666666666677777777776666666666666666666666666666666
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcc
Q 010830 168 MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF 247 (499)
Q Consensus 168 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 247 (499)
+.|+++.+.. +.+..++..+...+... |++++|...++++....+.+...+..+... . .
T Consensus 119 ~~~~~al~~~-~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-------~----------~-- 177 (368)
T 1fch_A 119 SALRRCLELK-PDNQTALMALAVSFTNE-SLQRQACEILRDWLRYTPAYAHLVTPAEEG-------A----------G-- 177 (368)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSTTTGGGCC--------------------------
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcCcHHHHHHHHHH-------h----------h--
Confidence 6666665543 33455555555555555 666666666665544332222222111000 0 0
Q ss_pred CCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCC-CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCH
Q 010830 248 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF-PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNL 326 (499)
Q Consensus 248 ~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 326 (499)
...+ . ..+.. +..+...|++++|+..|+++.+..-. ++..++..+...+...|++++|...++++.+.. +.+.
T Consensus 178 ~~~~-~-~~~~~-~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---~~~~ 251 (368)
T 1fch_A 178 GAGL-G-PSKRI-LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR---PNDY 251 (368)
T ss_dssp ----------CT-THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCH
T ss_pred hhcc-c-HHHHH-HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cCCH
Confidence 0000 0 00001 22222555555555555555543211 134555555556666666666666666655543 3345
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC----------CCh
Q 010830 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ----------PTP 396 (499)
Q Consensus 327 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----------p~~ 396 (499)
.+|..+...|.+.|++++|...|+++.+.. +.+...+..+...|.+.|++++|...|+++.+.... ...
T Consensus 252 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 252 LLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhh
Confidence 566666666666666666666666655531 123455566666666666666666666665543110 014
Q ss_pred hhHHHHHHHHhccCChhHHHHHHH
Q 010830 397 LNCATAITMLLDADEPEIAIEIWN 420 (499)
Q Consensus 397 ~~~~~li~~~~~~g~~~~a~~~~~ 420 (499)
.+|..+..++...|++++|..+++
T Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 331 NIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHHHHHHHHHhCChHhHHHhHH
Confidence 556666666666666666666654
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.82 E-value=2.5e-18 Score=161.97 Aligned_cols=287 Identities=11% Similarity=0.022 Sum_probs=178.6
Q ss_pred cCChhHHHH-HHHHHHhCCC-Cc--CHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHH
Q 010830 160 AGKYDEAVM-SFDVMSMHGV-EQ--DVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEE 235 (499)
Q Consensus 160 ~g~~~~A~~-~~~~m~~~g~-~p--~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 235 (499)
.|++++|.+ .|++.....- .| +...+..+...+... |++++|..+|+++.+..+.+..++..+...|.+.|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQE-GDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHT-TCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHH
Confidence 355555555 5544332210 01 233344455555555 666666666666555445555566666666666666666
Q ss_pred HHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHH---------------HHHHHH
Q 010830 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN---------------ALDILV 300 (499)
Q Consensus 236 a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~---------------li~~~~ 300 (499)
|.+.|+++.+. .|++..++..+...+...|++++|++.++++.+.... +...+.. .+..+.
T Consensus 117 A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 117 AISALRRCLEL---KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 66666666443 4545556666666666666666666666666554311 1111110 233334
Q ss_pred HcCCHhHHHHHHHHHHhcCCCCCC--CHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHh
Q 010830 301 KLNDSTHAVQLWDIMVGIGFNLMP--NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVH 378 (499)
Q Consensus 301 ~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 378 (499)
..|++++|...++++.+.. +. +..++..+...|.+.|++++|...|+++.+.. +.+...|..+...+...|+++
T Consensus 193 ~~~~~~~A~~~~~~a~~~~---p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~ 268 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLD---PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSE 268 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHS---TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred hcccHHHHHHHHHHHHHhC---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHH
Confidence 7788888888888888764 22 47788888888888888888888888877642 234667888888888888888
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCC----------hHHHHHHHHHHHHhCCChH
Q 010830 379 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP----------LEASANELLVGLRNLGRLS 448 (499)
Q Consensus 379 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p----------~~~~~~~ll~~~~~~g~~~ 448 (499)
+|...|+++.+.. +.+..++..+...|.+.|++++|...++++.+..... ...+|..+..+|.+.|+++
T Consensus 269 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 347 (368)
T 1fch_A 269 EAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD 347 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChH
Confidence 8888888887753 2356677788888888888888888888777522111 1567778888888888888
Q ss_pred HHHHHHHH
Q 010830 449 DVRRFAEE 456 (499)
Q Consensus 449 ~a~~~~~~ 456 (499)
+|..++++
T Consensus 348 ~A~~~~~~ 355 (368)
T 1fch_A 348 AYGAADAR 355 (368)
T ss_dssp GHHHHHTT
T ss_pred hHHHhHHH
Confidence 88777663
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.82 E-value=8.7e-15 Score=143.31 Aligned_cols=352 Identities=12% Similarity=0.072 Sum_probs=293.5
Q ss_pred CCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCcC
Q 010830 110 RLSPYAWNLMVDVLGK----NGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCG----AGKYDEAVMSFDVMSMHGVEQD 181 (499)
Q Consensus 110 ~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~ 181 (499)
..++.++..+...|.. .+++++|++.|+...+.+ +...+..|...|.. .+++++|.++|++..+.| +
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG--YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 4467788888888888 899999999999998875 67788889999998 899999999999998765 5
Q ss_pred HHHHHHHHHHHHc----cCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhHccCCCCch
Q 010830 182 VVAVNSLLSAICR----QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK----EGNVEEANKTFGEMVERFEWNPEH 253 (499)
Q Consensus 182 ~~~~~~ll~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~ 253 (499)
...+..|-..|.. . +++++|..+|++..+. .+...+..+...|.. .++.++|.+.|++..+. + +
T Consensus 111 ~~a~~~Lg~~y~~g~g~~-~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-~----~ 182 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVK-VDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-G----N 182 (490)
T ss_dssp HHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T----C
T ss_pred HHHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C----C
Confidence 6677777777776 5 8999999999998663 467788888888887 88999999999999774 3 5
Q ss_pred HHhHHHHHHHHhc----CCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHH----cCCHhHHHHHHHHHHhcCCCCCCC
Q 010830 254 VLAYETFLITLIR----GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK----LNDSTHAVQLWDIMVGIGFNLMPN 325 (499)
Q Consensus 254 ~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 325 (499)
...+..+...|.. .++.++|+++|++..+.| +...+..+...|.. .++.++|..+|++..+.+ +
T Consensus 183 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~ 254 (490)
T 2xm6_A 183 VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG-----N 254 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT-----C
T ss_pred HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----C
Confidence 6688888888888 899999999999998876 56677778888876 789999999999999876 5
Q ss_pred HhHHHHHHHHHHc----CCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc-----CCHhHHHHHHHHHHHCCCCCCh
Q 010830 326 LIMYNAVIGLLCN----NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN-----KRVHEVEKFFHEMIKNEWQPTP 396 (499)
Q Consensus 326 ~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~p~~ 396 (499)
...+..+...|.. .++.++|+..|++..+.| +...+..+...|... ++.++|...|++..+.+ +.
T Consensus 255 ~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~ 328 (490)
T 2xm6_A 255 SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DA 328 (490)
T ss_dssp HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CH
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CH
Confidence 6677778788877 899999999999998764 556777788888877 89999999999999876 45
Q ss_pred hhHHHHHHHHhccC---ChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCccCHHHH
Q 010830 397 LNCATAITMLLDAD---EPEIAIEIWNYILENGILPLEASANELLVGLRN----LGRLSDVRRFAEEMLNRRILIYEVTM 469 (499)
Q Consensus 397 ~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~ 469 (499)
..+..+...|...| ++++|.++|++..+.| +...+..|-..|.. .+++++|..++++..+.+ +...+
T Consensus 329 ~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~ 402 (490)
T 2xm6_A 329 TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQ 402 (490)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHH
Confidence 66777777777656 7899999999999865 56778888888888 899999999999999876 46677
Q ss_pred HHHHHHHHh----cccc--hHHHHHHHHHHH
Q 010830 470 HKLKKAFYN----ESRS--MRDIFDSLERRC 494 (499)
Q Consensus 470 ~~ll~~~~~----~g~~--a~~~~~~~~~~~ 494 (499)
..|-..|.. .++. |.+.|+...+..
T Consensus 403 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 403 VQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 778777877 5666 888888887765
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.82 E-value=9.4e-19 Score=164.80 Aligned_cols=235 Identities=9% Similarity=-0.086 Sum_probs=131.0
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 010830 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS 190 (499)
Q Consensus 111 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 190 (499)
.+...|..+...+.+.|++++|++.|+.+.+..+.+..+|..+...|...|++++|++.|++..+.. +.+..++..+..
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 3445577777778888888888888888877777777777888888888888888888887776553 334566666666
Q ss_pred HHHccCCchHHHHHHHHHHhccCCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCc--hHHhHH
Q 010830 191 AICRQENQTSRALEFLNRVKKIVDPD----------GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE--HVLAYE 258 (499)
Q Consensus 191 ~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~ 258 (499)
.+... |++++|...++++.+..+.+ ...+..+...+.+.|++++|.+.|+++.+. .|+ +..+|.
T Consensus 142 ~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~ 217 (365)
T 4eqf_A 142 SYTNT-SHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ---NGDMIDPDLQT 217 (365)
T ss_dssp HHHHT-TCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH---SCSSCCHHHHH
T ss_pred HHHcc-ccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh---CcCccCHHHHH
Confidence 66666 67777777666654321111 112223345555555555555555555443 333 344555
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHc
Q 010830 259 TFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338 (499)
Q Consensus 259 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 338 (499)
.+...+.+.|++++|++.|++..+.. +.+..++..+..+|.+.|++++|...++++.+.. +.+..+|..+...|.+
T Consensus 218 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~ 293 (365)
T 4eqf_A 218 GLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ---PGFIRSRYNLGISCIN 293 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHH
Confidence 55555555555555555555544432 1234445555555555555555555555555432 2234445555555555
Q ss_pred CCChHHHHHHHHHHHH
Q 010830 339 NDDVDNVFRFFDQMVF 354 (499)
Q Consensus 339 ~~~~~~a~~~~~~m~~ 354 (499)
.|++++|...|+++.+
T Consensus 294 ~g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 294 LGAYREAVSNFLTALS 309 (365)
T ss_dssp HTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5555555555554443
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=1e-15 Score=151.50 Aligned_cols=404 Identities=10% Similarity=0.043 Sum_probs=291.6
Q ss_pred CHHHHHHHHH-hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHH-
Q 010830 80 TPDLVHEVLQ-LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSY- 157 (499)
Q Consensus 80 ~~~~~~~~l~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~- 157 (499)
+......++. ...++.+.|..+|+.+....+.+...|..++..+.+.|++++|.++|+++.... |+...|...+...
T Consensus 12 ~~~~w~~l~~~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-p~~~lw~~~~~~~~ 90 (530)
T 2ooe_A 12 DLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-LHIDLWKCYLSYVR 90 (530)
T ss_dssp CHHHHHHHHHHHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC-CCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CChHHHHHHHHHHH
Confidence 3444444444 346899999999999998889999999999999999999999999999999887 4888888887643
Q ss_pred HhcCChhHHHH----HHHHHHh-CCCCc-CHHHHHHHHHHHHc---------cCCchHHHHHHHHHHhccCCCC--HHHH
Q 010830 158 CGAGKYDEAVM----SFDVMSM-HGVEQ-DVVAVNSLLSAICR---------QENQTSRALEFLNRVKKIVDPD--GDSF 220 (499)
Q Consensus 158 ~~~g~~~~A~~----~~~~m~~-~g~~p-~~~~~~~ll~~~~~---------~~~~~~~a~~~~~~~~~~~~~~--~~~~ 220 (499)
...|+++.|.+ +|+.... .|..| +...|...+..... . |+++.|..+|++... .+.+ ...|
T Consensus 91 ~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~~~a~~~y~~al~-~P~~~~~~~~ 168 (530)
T 2ooe_A 91 ETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAEN-QRITAVRRVYQRGCV-NPMINIEQLW 168 (530)
T ss_dssp HHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHH-HHHHHHHHHHHHHTT-SCCTTHHHHH
T ss_pred HHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHH-hHHHHHHHHHHHHHh-chhhhHHHHH
Confidence 45678887765 7776654 36554 45677777776544 5 889999999999877 2221 2333
Q ss_pred HHHHHHH-------------HhcCCHHHHHHHHHHHhH---ccC-----CCCch-------HHhHHHHHHHHhcC----C
Q 010830 221 AILLEGW-------------EKEGNVEEANKTFGEMVE---RFE-----WNPEH-------VLAYETFLITLIRG----K 268 (499)
Q Consensus 221 ~~ll~~~-------------~~~g~~~~a~~~~~~~~~---~~~-----~~p~~-------~~~~~~li~~~~~~----~ 268 (499)
....... .+.++++.|..++.++.. ... +.|.. ...|...+...... +
T Consensus 169 ~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~ 248 (530)
T 2ooe_A 169 RDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTE 248 (530)
T ss_dssp HHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCS
T ss_pred HHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCC
Confidence 3322211 134567777777766321 111 23321 24566655444332 2
Q ss_pred CH----HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHH-------cCCHh-------HHHHHHHHHHhcCCCCCCCHhHHH
Q 010830 269 QV----DEALKFLRVMKGENCFPTLKFFSNALDILVK-------LNDST-------HAVQLWDIMVGIGFNLMPNLIMYN 330 (499)
Q Consensus 269 ~~----~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~~ 330 (499)
+. +++..+|++..... +-+...|......+.+ .|+++ +|..++++..+.- .+.+...|.
T Consensus 249 ~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~--~p~~~~l~~ 325 (530)
T 2ooe_A 249 DQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL--LKKNMLLYF 325 (530)
T ss_dssp CSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT--CSSCHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh--CcccHHHHH
Confidence 32 47788888887653 3456777777777775 68887 8999999998732 345788999
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHCCCCCCH--HhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHH-Hh
Q 010830 331 AVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS--LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM-LL 407 (499)
Q Consensus 331 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~-~~ 407 (499)
.++..+.+.|++++|..+|+++.+. .|+. ..|...+..+.+.|++++|..+|++..+.. +.+...|...... +.
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~ 402 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYY 402 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHH
Confidence 9999999999999999999999984 4542 478888888899999999999999998863 1223333332222 33
Q ss_pred ccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC-CccC--HHHHHHHHHHHHhcccc--
Q 010830 408 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR-ILIY--EVTMHKLKKAFYNESRS-- 482 (499)
Q Consensus 408 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~p~--~~~~~~ll~~~~~~g~~-- 482 (499)
..|+.++|..+|+...+.. +-+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...++.....|+.
T Consensus 403 ~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~ 481 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS 481 (530)
T ss_dssp HTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHH
T ss_pred HcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5899999999999988743 3357889999999999999999999999999864 2332 55788888888888987
Q ss_pred hHHHHHHHHHH
Q 010830 483 MRDIFDSLERR 493 (499)
Q Consensus 483 a~~~~~~~~~~ 493 (499)
+..+...+.+.
T Consensus 482 ~~~~~~r~~~~ 492 (530)
T 2ooe_A 482 ILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666665554
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.81 E-value=2.7e-18 Score=161.71 Aligned_cols=235 Identities=9% Similarity=0.047 Sum_probs=136.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHH
Q 010830 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225 (499)
Q Consensus 146 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~ 225 (499)
+...|..+...+.+.|++++|.++|+.+.+.. +.+..++..+...+... |++++|...|+++.+..+.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAEN-ENEQAAIVALQRCLELQPNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 44457777888888888888888888877653 34566777777777777 77777777777776655566777777777
Q ss_pred HHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHH----------HHHHHhcCCCHHHHHHHHHHHhhCCCC-CCHhhHHH
Q 010830 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYET----------FLITLIRGKQVDEALKFLRVMKGENCF-PTLKFFSN 294 (499)
Q Consensus 226 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~----------li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~ 294 (499)
.|...|++++|.+.|+++.+. .|++...+.. +...+.+.|++++|++.|+++.+..-. .+..++..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQ---NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHh---CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence 777777777777777777553 3433322322 255555556666666666555543211 13445555
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 010830 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN 374 (499)
Q Consensus 295 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 374 (499)
+...|...|++++|.+.++++.+.. +.+..+|+.+...|.+.|++++|+..|+++.+.. +.+...+..+..+|...
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 294 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVR---PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINL 294 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHC
Confidence 5555555555555555555555542 3345555555555555555555555555555431 11244455555555555
Q ss_pred CCHhHHHHHHHHHHH
Q 010830 375 KRVHEVEKFFHEMIK 389 (499)
Q Consensus 375 g~~~~a~~~~~~~~~ 389 (499)
|++++|...|+++.+
T Consensus 295 g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 295 GAYREAVSNFLTALS 309 (365)
T ss_dssp TCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555544
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=2e-17 Score=152.99 Aligned_cols=265 Identities=11% Similarity=0.002 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 010830 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI 192 (499)
Q Consensus 113 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 192 (499)
...|..+...+...|++++|..+|+++.+..+.+..++..+...+...|++++|.+.|+++.+.. +.+..++..+...+
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 34555666777777777777777777777666667777777777777777777777777776543 33455666666666
Q ss_pred HccCCchHHHHHHHHHHhccCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHhHccCCCCchHHhH
Q 010830 193 CRQENQTSRALEFLNRVKKIVDPDGDSFAIL--------------LE-GWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257 (499)
Q Consensus 193 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l--------------l~-~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 257 (499)
... |++++|...++++.+..+.+...+..+ .. .+...|++++|.+.++++.+. .|++...+
T Consensus 100 ~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~ 175 (327)
T 3cv0_A 100 TNE-HNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM---NPNDAQLH 175 (327)
T ss_dssp HHT-TCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH---STTCHHHH
T ss_pred HHc-CCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh---CCCCHHHH
Confidence 666 777777777766654333333333332 22 255566666666666666543 44455566
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHH
Q 010830 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337 (499)
Q Consensus 258 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 337 (499)
..+...+.+.|++++|.+.++++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+...+..+...|.
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~ 251 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN---PGYVRVMYNMAVSYS 251 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHH
Confidence 666666666666666666666655433 2234555556666666666666666666665543 334555666666666
Q ss_pred cCCChHHHHHHHHHHHHCCCCC-----------CHHhHHHHHHHHHhcCCHhHHHHHHHH
Q 010830 338 NNDDVDNVFRFFDQMVFHGAFP-----------DSLTYNMIFECLIKNKRVHEVEKFFHE 386 (499)
Q Consensus 338 ~~~~~~~a~~~~~~m~~~g~~p-----------~~~~~~~ll~~~~~~g~~~~a~~~~~~ 386 (499)
+.|++++|.+.|+++.+..... +...|..+..++.+.|+.++|..+++.
T Consensus 252 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 252 NMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 6666666666666555421110 244555555555566666665555543
No 25
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.80 E-value=9.5e-20 Score=181.65 Aligned_cols=119 Identities=11% Similarity=0.015 Sum_probs=77.8
Q ss_pred CHhHHHHHHHHHHcCCChHHHHHHHHHHHH---CCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHH
Q 010830 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVF---HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 401 (499)
Q Consensus 325 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 401 (499)
-..+||+||.+||+.|++++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 345666666666666666666666665543 35666666666666666666666666666666666666666666666
Q ss_pred HHHHHhccCCh-hHHHHHHHHHHHCCCCChHHHHHHHHHHHHh
Q 010830 402 AITMLLDADEP-EIAIEIWNYILENGILPLEASANELLVGLRN 443 (499)
Q Consensus 402 li~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 443 (499)
+|.++++.|+. ++|.++|++|.+.|+.||..+|++++.++.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 66666666653 5666666666666666666666666655444
No 26
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=1e-14 Score=144.35 Aligned_cols=371 Identities=10% Similarity=0.070 Sum_probs=267.7
Q ss_pred CHHHHHHHHH--hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHH-HhCCChHHHHH----HHHHHHhC-C--CCCHHH
Q 010830 80 TPDLVHEVLQ--LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVL-GKNGRFEQMWN----AVRVMKED-G--VLSLPT 149 (499)
Q Consensus 80 ~~~~~~~~l~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~~~~a~~----~~~~m~~~-~--~~~~~~ 149 (499)
+.......+. ...|+.+.|..+|+.+.... |+...|..++... ...|+.+.|.+ +|+..... | +.+...
T Consensus 45 ~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~ 123 (530)
T 2ooe_A 45 SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQI 123 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC-CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHH
Confidence 3444444444 45789999999999988755 5888898888643 45678877765 77776543 3 456788
Q ss_pred HHHHHHHHHh---------cCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHH-------------HccCCchHHHHHHHH
Q 010830 150 FASIFDSYCG---------AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI-------------CRQENQTSRALEFLN 207 (499)
Q Consensus 150 ~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-------------~~~~~~~~~a~~~~~ 207 (499)
|...+....+ .|+++.|..+|++..+.........|....... .+. +++..|..++.
T Consensus 124 w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~-~~~~~A~~~~~ 202 (530)
T 2ooe_A 124 WVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRS-RDYMNARRVAK 202 (530)
T ss_dssp HHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTH-HHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhh-HHHHHHHHHHH
Confidence 8888887765 789999999999998732111123343322210 123 56777887776
Q ss_pred HHhc-------c---CCCC--------HHHHHHHHHHHHhc----CCH----HHHHHHHHHHhHccCCCCchHHhHHHHH
Q 010830 208 RVKK-------I---VDPD--------GDSFAILLEGWEKE----GNV----EEANKTFGEMVERFEWNPEHVLAYETFL 261 (499)
Q Consensus 208 ~~~~-------~---~~~~--------~~~~~~ll~~~~~~----g~~----~~a~~~~~~~~~~~~~~p~~~~~~~~li 261 (499)
.+.. . ++|+ ...|...+...... ++. +.+..+|++.... .|.+...|..++
T Consensus 203 ~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~---~p~~~~~w~~~~ 279 (530)
T 2ooe_A 203 EYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV---LGHHPDIWYEAA 279 (530)
T ss_dssp HHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH---HTTCHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 6321 1 2443 24555555433222 232 3777889888664 677788899998
Q ss_pred HHHhc-------CCCHH-------HHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCC-H
Q 010830 262 ITLIR-------GKQVD-------EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN-L 326 (499)
Q Consensus 262 ~~~~~-------~~~~~-------~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~ 326 (499)
..+.+ .|+++ +|.++|++..+.-.+-+...+..++..+.+.|++++|..+|+++++.. +.+ .
T Consensus 280 ~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~ 356 (530)
T 2ooe_A 280 QYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE---DIDPT 356 (530)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS---SSCHH
T ss_pred HHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc---ccCch
Confidence 88875 78887 899999998863233457888899999999999999999999999853 223 3
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHH-HHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 010830 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFE-CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 405 (499)
Q Consensus 327 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 405 (499)
..|..++..+.+.|++++|.++|++..+... .+...|..... .+...|+.++|..+|+..++.. +-+...+..++..
T Consensus 357 ~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~ 434 (530)
T 2ooe_A 357 LVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDY 434 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 5899999999999999999999999987521 12233332222 2346899999999999998853 2357888999999
Q ss_pred HhccCChhHHHHHHHHHHHCC-CCCh--HHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 010830 406 LLDADEPEIAIEIWNYILENG-ILPL--EASANELLVGLRNLGRLSDVRRFAEEMLNR 460 (499)
Q Consensus 406 ~~~~g~~~~a~~~~~~m~~~~-~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 460 (499)
+.+.|+.++|..+|++....+ ..|+ ...|...+....+.|+.+.+..+.+++.+.
T Consensus 435 ~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 435 LSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999854 2332 458888888888999999999999998864
No 27
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.79 E-value=3.4e-19 Score=177.70 Aligned_cols=151 Identities=17% Similarity=0.174 Sum_probs=108.6
Q ss_pred hHHhHHHHHHHHhcCCCHHHHHHHHHHHhh---CCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHH
Q 010830 253 HVLAYETFLITLIRGKQVDEALKFLRVMKG---ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY 329 (499)
Q Consensus 253 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 329 (499)
-..+||++|++|++.|++++|.++|++|.+ .|+.||..|||+||++||+.|++++|.++|++|.+.| +.||..||
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G--~~PDvvTY 203 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG--LTPDLLSY 203 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--CCCCHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCcHHHH
Confidence 345788888888888888888888876653 4677888888888888888888888888888888888 78888888
Q ss_pred HHHHHHHHcCCCh-HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC------hhhHHHH
Q 010830 330 NAVIGLLCNNDDV-DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT------PLNCATA 402 (499)
Q Consensus 330 ~~li~~~~~~~~~-~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~------~~~~~~l 402 (499)
|++|.++|+.|+. ++|.++|++|.+.|+.||..+|+.++.++.+. .+++..+++ ..++.|+ ..+...|
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHH
Confidence 8888888888764 67788888888888888888888877665553 333334444 2244443 4455556
Q ss_pred HHHHhccC
Q 010830 403 ITMLLDAD 410 (499)
Q Consensus 403 i~~~~~~g 410 (499)
.+.|.+.+
T Consensus 279 ~dl~s~d~ 286 (1134)
T 3spa_A 279 RDVYAKDG 286 (1134)
T ss_dssp HHHHCCCS
T ss_pred HHHHccCC
Confidence 66666554
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=9.9e-17 Score=148.22 Aligned_cols=253 Identities=10% Similarity=-0.007 Sum_probs=153.5
Q ss_pred CchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHH
Q 010830 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276 (499)
Q Consensus 197 ~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~ 276 (499)
|++++|..+|+++.+..+.+...+..+...+.+.|++++|.+.|+++.+. .|++..++..+...+...|++++|++.
T Consensus 35 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~ 111 (327)
T 3cv0_A 35 ANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML---DPKDIAVHAALAVSHTNEHNANAALAS 111 (327)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CcCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34444444444333322333444444444444444444444444444332 333344444444444444444444444
Q ss_pred HHHHhhCCCCCCHhhHHH-------------H-HH-HHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCC
Q 010830 277 LRVMKGENCFPTLKFFSN-------------A-LD-ILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341 (499)
Q Consensus 277 ~~~m~~~~~~p~~~~~~~-------------l-i~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 341 (499)
++++.+... .+...+.. + .. .+...|++++|...++++.+.. +.+...+..+...|.+.|+
T Consensus 112 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~ 187 (327)
T 3cv0_A 112 LRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN---PNDAQLHASLGVLYNLSNN 187 (327)
T ss_dssp HHHHHHTST-TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHhcc
Confidence 444443220 01111111 1 11 2556677788888888877764 4467778888888888888
Q ss_pred hHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHH
Q 010830 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 421 (499)
Q Consensus 342 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 421 (499)
+++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.+.+++
T Consensus 188 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 265 (327)
T 3cv0_A 188 YDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVR 265 (327)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 888888888877642 2346677778888888888888888888877753 23566777888888888888888888888
Q ss_pred HHHCCCCC-----------hHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 010830 422 ILENGILP-----------LEASANELLVGLRNLGRLSDVRRFAEEML 458 (499)
Q Consensus 422 m~~~~~~p-----------~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 458 (499)
+.+..... +...|..+..++.+.|++++|..++++..
T Consensus 266 a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 266 AIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 77633221 46778888888888899888888876543
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=6e-16 Score=140.02 Aligned_cols=249 Identities=13% Similarity=0.143 Sum_probs=134.2
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCcCH--HHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHH
Q 010830 157 YCGAGKYDEAVMSFDVMSMHGVEQDV--VAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234 (499)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 234 (499)
....|++..|+..++..... .|+. .....+.++|... |+++.|+..++. ..+|+..++..+...+...|+.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~-g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQ-RKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHT-TCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHC-CCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHH
Confidence 34455566666555544322 2322 2333444555555 555555554332 23445555566666666666666
Q ss_pred HHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHH
Q 010830 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314 (499)
Q Consensus 235 ~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 314 (499)
+|.+.++++... +..|++...+..+...+.+.|++++|++.+++ ..+...+..+...+.+.|+.++|.+.++.
T Consensus 83 ~A~~~l~~ll~~-~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 83 AIVAELDREMSR-SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHS-CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666666543 44555555555666666666666666666654 24455555666666666666666666666
Q ss_pred HHhcCCCCCCCHh---HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010830 315 MVGIGFNLMPNLI---MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391 (499)
Q Consensus 315 ~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 391 (499)
+.+.. |+.. .....+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|+..|+++++..
T Consensus 156 ~~~~~----p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 156 MQDQD----EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHC----TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHhhC----cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 66543 3211 1112223333445666666666666554 23345556666666666666666666666665543
Q ss_pred CCCChhhHHHHHHHHhccCChhH-HHHHHHHHHH
Q 010830 392 WQPTPLNCATAITMLLDADEPEI-AIEIWNYILE 424 (499)
Q Consensus 392 ~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~ 424 (499)
+-+..++..++..+...|+.++ +.++++++.+
T Consensus 231 -p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 231 -SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp -TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 2244555555555555665543 4455555554
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=2.9e-16 Score=145.38 Aligned_cols=281 Identities=11% Similarity=0.107 Sum_probs=111.4
Q ss_pred hcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 010830 91 SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSF 170 (499)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 170 (499)
..|+.++|.++++.. +++.+|..+..++.+.|++++|++.|.+. +|..+|..++..+...|++++|++.+
T Consensus 15 ~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 15 HIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 456677888888755 33358888888888888888888888543 35667888888888888888888877
Q ss_pred HHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCC
Q 010830 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250 (499)
Q Consensus 171 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 250 (499)
+...+. .++..+.+.++.+|.+. |+++++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 85 ~~ark~--~~~~~i~~~Li~~Y~Kl-g~l~e~e~f~~------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------- 148 (449)
T 1b89_A 85 QMARKK--ARESYVETELIFALAKT-NRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT------CC----------------CTTTHHHHHHHT-------
T ss_pred HHHHHh--CccchhHHHHHHHHHHh-CCHHHHHHHHc------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence 666553 45567778888888888 88888777774 366678888888888888888888888766
Q ss_pred CchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHH
Q 010830 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYN 330 (499)
Q Consensus 251 p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 330 (499)
..|..++.++.+.|++++|.+.++++ .+..+|..++.+|...|+++.|......+ ..++.-..
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-------~~~ad~l~ 211 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-------VVHADELE 211 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-------TTCHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-------HhCHhhHH
Confidence 15788888888888888888888877 25778888888888888888885544432 22333344
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc--CCHhHHHHHHHHHHHCCCCC------ChhhHHHH
Q 010830 331 AVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN--KRVHEVEKFFHEMIKNEWQP------TPLNCATA 402 (499)
Q Consensus 331 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~p------~~~~~~~l 402 (499)
.++..|.+.|++++|..+++...... +-....|+-+--.|++- ++..+.++.|..- .+++| +...|.-+
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~ 288 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAEL 288 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHH
Confidence 67788888888888888888776543 33455566665555543 2333444433311 12222 34456666
Q ss_pred HHHHhccCChhHHHH
Q 010830 403 ITMLLDADEPEIAIE 417 (499)
Q Consensus 403 i~~~~~~g~~~~a~~ 417 (499)
.-.|.+.++++.|..
T Consensus 289 ~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 289 VFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHTTCHHHHHH
T ss_pred HHHHHhhchHHHHHH
Confidence 666667777776654
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=9.6e-16 Score=138.67 Aligned_cols=248 Identities=10% Similarity=0.069 Sum_probs=164.5
Q ss_pred hcCCchhHHHHHHHhcCCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010830 91 SYDSPSSAVDFFRWAGRGQRLS-PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS 169 (499)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 169 (499)
..|+...|+..++......+.+ ......+.++|...|+++.|+..++. ...++..++..+...+...|+.++|++.
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~~ 87 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIVAE 87 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHHHH
Confidence 4577777777776543322112 34556667788888888887765543 2445666777777888888888888888
Q ss_pred HHHHHhCCCCcCHH-HHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccC
Q 010830 170 FDVMSMHGVEQDVV-AVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFE 248 (499)
Q Consensus 170 ~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 248 (499)
++++...+..|+.. .+..+-..+... |++++|+..+++ +.+...+..++..|.+.|++++|.+.|+++.+.
T Consensus 88 l~~ll~~~~~P~~~~~~~~la~~~~~~-g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 159 (291)
T 3mkr_A 88 LDREMSRSVDVTNTTFLLMAASIYFYD-QNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-- 159 (291)
T ss_dssp HHHHHHSCCCCSCHHHHHHHHHHHHHT-TCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHhcccCCCCHHHHHHHHHHHHHC-CCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--
Confidence 88877666555443 344444566666 888888887776 466777777777888888888888888887654
Q ss_pred CCCchHHhH--HHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCH
Q 010830 249 WNPEHVLAY--ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNL 326 (499)
Q Consensus 249 ~~p~~~~~~--~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 326 (499)
.|++.... ..++..+...|++++|+.+|+++.+.. +.+...++.+..++.+.|++++|+..+++.++.. +-+.
T Consensus 160 -~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~---p~~~ 234 (291)
T 3mkr_A 160 -DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD---SGHP 234 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCH
T ss_pred -CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCH
Confidence 45432111 223344445577777777777777652 3466667777777777777777777777777654 4466
Q ss_pred hHHHHHHHHHHcCCChHH-HHHHHHHHHH
Q 010830 327 IMYNAVIGLLCNNDDVDN-VFRFFDQMVF 354 (499)
Q Consensus 327 ~~~~~li~~~~~~~~~~~-a~~~~~~m~~ 354 (499)
.++..++..+...|+.++ +.++++++.+
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 677777777777777654 4567777666
No 32
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=9.2e-18 Score=155.32 Aligned_cols=306 Identities=10% Similarity=0.041 Sum_probs=145.1
Q ss_pred hCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHH
Q 010830 125 KNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204 (499)
Q Consensus 125 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~ 204 (499)
+.|++++|.+.++++. ...+|..|+.++.+.|++++|++.|.+ .+|..+|..++..+... |++++|..
T Consensus 15 ~~~~ld~A~~fae~~~-----~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~-g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN-----EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTS-GNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhC-CCHHHHHH
Confidence 6678999999999993 335899999999999999999999965 36777999999999988 99999999
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 010830 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284 (499)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 284 (499)
++++..+. .++..+.+.++.+|.+.|+++++.++++ .| +..+|+.+...|...|.+++|...|..+
T Consensus 83 yl~~ark~-~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 83 YLQMARKK-ARESYVETELIFALAKTNRLAELEEFIN--------GP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT--------CC-----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHh-CccchhHHHHHHHHHHhCCHHHHHHHHc--------CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 88887764 4557889999999999999999887774 24 5569999999999999999999999977
Q ss_pred CCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhH
Q 010830 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTY 364 (499)
Q Consensus 285 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 364 (499)
..|..+..++.+.|++++|.+.+..+ + ++.+|..++.+|...|+++.|......+. .+..-.
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA---~-----~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l 210 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA---N-----STRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADEL 210 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH---T-----CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc---C-----CchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhH
Confidence 47999999999999999999999988 2 68999999999999999999966555432 344445
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcc--CChhHHHHHHHHHHHCCCCC------hHHHHHH
Q 010830 365 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA--DEPEIAIEIWNYILENGILP------LEASANE 436 (499)
Q Consensus 365 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~~~~p------~~~~~~~ 436 (499)
..++..|.+.|++++|..+++..+... +-....|+-|..+|++- +++.+..+.|.. +-+++| +...|..
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e 287 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAE 287 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHH
Confidence 578899999999999999999988654 44566777777777754 444444444431 222322 2467888
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHc-CC-------------ccCHHHHHHHHHHHHhcc
Q 010830 437 LLVGLRNLGRLSDVRRFAEEMLNR-RI-------------LIYEVTMHKLKKAFYNES 480 (499)
Q Consensus 437 ll~~~~~~g~~~~a~~~~~~m~~~-~~-------------~p~~~~~~~ll~~~~~~g 480 (499)
+...|.+.++++.|... |.+. .. ..+...|-..+.-|....
T Consensus 288 ~~~ly~~~~e~d~A~~t---m~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~ 342 (449)
T 1b89_A 288 LVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK 342 (449)
T ss_dssp HHHHHHHTTCHHHHHHH---HHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHC
T ss_pred HHHHHHhhchHHHHHHH---HHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcC
Confidence 99999999999988763 3332 11 234566666666666443
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=2.9e-14 Score=139.02 Aligned_cols=364 Identities=11% Similarity=0.030 Sum_probs=224.3
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhC---------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC----
Q 010830 110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED---------GVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH---- 176 (499)
Q Consensus 110 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 176 (499)
......||.+...+...|++++|++.|++..+. .+....+|+.+...|...|++++|...+++..+.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 344567888888888889999998888776542 2345678888888899999999998888876432
Q ss_pred -C-CCc-CHHHHHHHHHHHHcc-CCchHHHHHHHHHHhccCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHhHccCC
Q 010830 177 -G-VEQ-DVVAVNSLLSAICRQ-ENQTSRALEFLNRVKKIVDPDGDSFAILLEGW---EKEGNVEEANKTFGEMVERFEW 249 (499)
Q Consensus 177 -g-~~p-~~~~~~~ll~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~---~~~g~~~~a~~~~~~~~~~~~~ 249 (499)
+ ..+ ...++..+-.++... .+++++|...|++..+..+.+...+..+...+ ...++.++|++.+++..+.
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--- 204 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--- 204 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH---
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc---
Confidence 1 111 234454444344332 15788899988887765555666666555543 3456777888888777543
Q ss_pred CCchHHhHHHHHHHHhc----CCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCC
Q 010830 250 NPEHVLAYETFLITLIR----GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN 325 (499)
Q Consensus 250 ~p~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 325 (499)
.|++...+..+...+.. .+++++|.+.+++..... +.+..++..+...|...|++++|...+++..+.. +.+
T Consensus 205 ~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~ 280 (472)
T 4g1t_A 205 NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI---PNN 280 (472)
T ss_dssp CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTC
T ss_pred CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC---CCh
Confidence 66666666666555444 356778888888776644 3356677788888888899999999998888764 445
Q ss_pred HhHHHHHHHHHHcC-------------------CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHH
Q 010830 326 LIMYNAVIGLLCNN-------------------DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 386 (499)
Q Consensus 326 ~~~~~~li~~~~~~-------------------~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 386 (499)
..++..+...|... +..+.|...+++..+.. +.+...+..+...|...|++++|+..|++
T Consensus 281 ~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~k 359 (472)
T 4g1t_A 281 AYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQK 359 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHH
Confidence 66666666555321 22456777777766642 22446677788888888888888888888
Q ss_pred HHHCCCCCChh--hHHHHHH-HHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCc
Q 010830 387 MIKNEWQPTPL--NCATAIT-MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463 (499)
Q Consensus 387 ~~~~~~~p~~~--~~~~li~-~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 463 (499)
.++....+... .+..+.. .....|+.++|...|++..+. .|+...... ....+.++++...+.+ +
T Consensus 360 aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~~~~~~~l~~~-p 427 (472)
T 4g1t_A 360 EFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQKIAKMRLSKN-G 427 (472)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHHHHHHHHHHHC-C
T ss_pred HHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHHHHHHHHHHhC-C
Confidence 88764332211 1222222 234678888888888887763 333222111 1223344444444433 2
Q ss_pred cCHHHHHHHHHHHHhcccc--hHHHHHHHHHH
Q 010830 464 IYEVTMHKLKKAFYNESRS--MRDIFDSLERR 493 (499)
Q Consensus 464 p~~~~~~~ll~~~~~~g~~--a~~~~~~~~~~ 493 (499)
.+..+|..+-..|...|+. |++.|++.++.
T Consensus 428 ~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 428 ADSEALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp -CTTHHHHHHHHHHHHHHCC------------
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3456677777777777777 77777776654
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.70 E-value=4e-14 Score=137.98 Aligned_cols=359 Identities=13% Similarity=0.012 Sum_probs=240.8
Q ss_pred HHhhcCCchhHHHHHHHhcC---------CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCC--------CCCHHHH
Q 010830 88 LQLSYDSPSSAVDFFRWAGR---------GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG--------VLSLPTF 150 (499)
Q Consensus 88 l~~~~~~~~~a~~~~~~~~~---------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--------~~~~~~~ 150 (499)
+....|+.++|++.|+.+.+ ..+....+|+.+..+|...|++++|...|++..+.. .....++
T Consensus 60 ~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~ 139 (472)
T 4g1t_A 60 LKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELD 139 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHH
Confidence 33567999999999987643 244557899999999999999999999998876532 2345677
Q ss_pred HHHHHHHHhc--CChhHHHHHHHHHHhCCCCcC-HHHHHHHHHH---HHccCCchHHHHHHHHHHhccCCCCHHHHHHHH
Q 010830 151 ASIFDSYCGA--GKYDEAVMSFDVMSMHGVEQD-VVAVNSLLSA---ICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224 (499)
Q Consensus 151 ~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll 224 (499)
..+..++... +++++|++.|++..+. .|+ ...+..+... +... ++.++|++.+++..+..+.+..++..+.
T Consensus 140 ~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~-~~~~~al~~~~~al~l~p~~~~~~~~l~ 216 (472)
T 4g1t_A 140 CEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNW-PPSQNAIDPLRQAIRLNPDNQYLKVLLA 216 (472)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHS-CCCCCTHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHhhcCCcchHHHHHHH
Confidence 7776666654 4799999999998876 454 4444444333 3344 7778889888887665566777777766
Q ss_pred HHHHh----cCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 010830 225 EGWEK----EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV 300 (499)
Q Consensus 225 ~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 300 (499)
..+.. .|++++|.+.+++.... .|++...+..+...|...|++++|+..+++..+.. +-+..++..+..+|.
T Consensus 217 ~~~~~~~~~~~~~~~a~~~~~~al~~---~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~ 292 (472)
T 4g1t_A 217 LKLHKMREEGEEEGEGEKLVEEALEK---APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYR 292 (472)
T ss_dssp HHHHHCC------CHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHh---CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHH
Confidence 55554 46788999999998654 67788899999999999999999999999988754 224455555555443
Q ss_pred H-------------------cCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCH
Q 010830 301 K-------------------LNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS 361 (499)
Q Consensus 301 ~-------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 361 (499)
. .+..+.|...++...+.. +.+...+..+...|...|++++|+..|++..+....+..
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~ 369 (472)
T 4g1t_A 293 AKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN---DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVA 369 (472)
T ss_dssp HHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC---TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC---CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChH
Confidence 2 123567888888887764 456778899999999999999999999999885433322
Q ss_pred H--hHHHHHH-HHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHH
Q 010830 362 L--TYNMIFE-CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 438 (499)
Q Consensus 362 ~--~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 438 (499)
. .+..+.. .....|+.++|+..|++.++.. |+...... ..+.+.++++...+.+ +.+..+|..+.
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~~---------~~~~l~~~~~~~l~~~-p~~~~~~~~LG 437 (472)
T 4g1t_A 370 KQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKEK---------MKDKLQKIAKMRLSKN-GADSEALHVLA 437 (472)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHHH---------HHHHHHHHHHHHHHHC-C-CTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHH---------HHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 1 1222222 3457899999999999998853 44332222 2334455666655543 34567899999
Q ss_pred HHHHhCCChHHHHHHHHHHHHcC-CccCHHH
Q 010830 439 VGLRNLGRLSDVRRFAEEMLNRR-ILIYEVT 468 (499)
Q Consensus 439 ~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~ 468 (499)
..|...|++++|.+.|++.++.+ ..|+..+
T Consensus 438 ~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~ 468 (472)
T 4g1t_A 438 FLQELNEKMQQADEDSERGLESGSLIPSASS 468 (472)
T ss_dssp HHHHHHHHCC---------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence 99999999999999999998754 2344433
No 35
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.70 E-value=4.3e-13 Score=138.55 Aligned_cols=331 Identities=13% Similarity=0.108 Sum_probs=223.3
Q ss_pred hcCCchhHHHHHHHhcCCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHH
Q 010830 91 SYDSPSSAVDFFRWAGRGQ---RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAV 167 (499)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~ 167 (499)
..|.+.+|+++++.+.-.. .-+...-+.++....+. +..+..+..+...... ...+...+...|.+++|.
T Consensus 997 ~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d------~~eIA~Iai~lglyEEAf 1069 (1630)
T 1xi4_A 997 TADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD------APDIANIAISNELFEEAF 1069 (1630)
T ss_pred hCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc------HHHHHHHHHhCCCHHHHH
Confidence 3455555555555543211 12334444444444444 3343434333333111 223556677778888888
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcc
Q 010830 168 MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF 247 (499)
Q Consensus 168 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 247 (499)
.+|++.. -.....+.++. .. +++++|.++.+++ -+..+|..+..++.+.|++++|.+.|.+.
T Consensus 1070 ~IYkKa~-----~~~~A~~VLie---~i-~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA---- 1131 (1630)
T 1xi4_A 1070 AIFRKFD-----VNTSAVQVLIE---HI-GNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA---- 1131 (1630)
T ss_pred HHHHHcC-----CHHHHHHHHHH---HH-hhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc----
Confidence 8887752 12222233332 33 7788888887765 34778888888888888888888888554
Q ss_pred CCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHh
Q 010830 248 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327 (499)
Q Consensus 248 ~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 327 (499)
+|...|..++.++.+.|++++|.++|...++.. ++....+.++.+|++.+++++...+. + .++..
T Consensus 1132 ----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~-----~~n~a 1196 (1630)
T 1xi4_A 1132 ----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N-----GPNNA 1196 (1630)
T ss_pred ----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h-----CCCHH
Confidence 266678888888888888888888888766644 33334445888888888887544332 2 24556
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 010830 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 407 (499)
Q Consensus 328 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 407 (499)
.|..+...|...|++++|..+|... ..|..+..++++.|++++|.+.+++. -+..+|..+-.+|.
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acv 1261 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACV 1261 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHh
Confidence 6777888888888899998888875 36888888888889988888888876 35578888888888
Q ss_pred ccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc
Q 010830 408 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 482 (499)
Q Consensus 408 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 482 (499)
..|++..|...... +..+...+..++..|.+.|.+++|+.+++..+..+ .-....|+-|...+++..-.
T Consensus 1262 e~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A 1262 DGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred hhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHH
Confidence 88888888776553 33455677789999999999999999998887544 33445676777777776544
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=4.3e-14 Score=125.55 Aligned_cols=225 Identities=12% Similarity=0.036 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCcC----HHHHH
Q 010830 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG--VEQD----VVAVN 186 (499)
Q Consensus 113 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~~~~ 186 (499)
...|..+...+...|++++|++.|+++.+.. .+..+|..+...|...|++++|.+.++...+.. ..++ ..++.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 3466677777777788888888887777776 677777777777777778887777777765531 0111 35555
Q ss_pred HHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhc
Q 010830 187 SLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266 (499)
Q Consensus 187 ~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~ 266 (499)
.+...+... |++++|...|++..+.. |+ ...+.+.|++++|.+.++++... .|.+...|..+...+..
T Consensus 84 ~l~~~~~~~-~~~~~A~~~~~~a~~~~-~~-------~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 84 RIGNAYHKL-GDLKKTIEYYQKSLTEH-RT-------ADILTKLRNAEKELKKAEAEAYV---NPEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHHHHC-CC-------HHHHHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-ccHHHHHHHHHHHHhcC-ch-------hHHHHHHhHHHHHHHHHHHHHHc---CcchHHHHHHHHHHHHH
Confidence 666666666 66666666666654421 22 12344556666666666666442 44455566666666666
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHH
Q 010830 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346 (499)
Q Consensus 267 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 346 (499)
.|++++|+..|++..+.. +.+..++..+..++...|++++|...++...+.. +.+...|..+...|.+.|++++|.
T Consensus 152 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~g~~~~A~ 227 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD---PNFVRAYIRKATAQIAVKEYASAL 227 (258)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHhhHHHHH
Confidence 666666666666655433 1234555555555666666666666666655543 334555555555555556666665
Q ss_pred HHHHHHHH
Q 010830 347 RFFDQMVF 354 (499)
Q Consensus 347 ~~~~~m~~ 354 (499)
..|++..+
T Consensus 228 ~~~~~a~~ 235 (258)
T 3uq3_A 228 ETLDAART 235 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
No 37
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.65 E-value=3.3e-12 Score=132.10 Aligned_cols=334 Identities=8% Similarity=0.053 Sum_probs=258.4
Q ss_pred HHHHHHHhcC---CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChhHHHHHHH
Q 010830 98 AVDFFRWAGR---GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV---LSLPTFASIFDSYCGAGKYDEAVMSFD 171 (499)
Q Consensus 98 a~~~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 171 (499)
-.++.+|... ....|+.--...+++|...|.+.+|+++++...-.+. .+...-+.++.+..+. +..+..+..+
T Consensus 967 RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~ 1045 (1630)
T 1xi4_A 967 RRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYIN 1045 (1630)
T ss_pred HHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHH
Confidence 3455666433 2345566667888999999999999999999985543 3456677788777777 5577777776
Q ss_pred HHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCC
Q 010830 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251 (499)
Q Consensus 172 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 251 (499)
.+... + ..-+-..+... |.+++|..+|++... .....+.++. ..|++++|.++.++..
T Consensus 1046 kLd~~----d---~~eIA~Iai~l-glyEEAf~IYkKa~~----~~~A~~VLie---~i~nldrAiE~Aervn------- 1103 (1630)
T 1xi4_A 1046 RLDNY----D---APDIANIAISN-ELFEEAFAIFRKFDV----NTSAVQVLIE---HIGNLDRAYEFAERCN------- 1103 (1630)
T ss_pred Hhhhc----c---HHHHHHHHHhC-CCHHHHHHHHHHcCC----HHHHHHHHHH---HHhhHHHHHHHHHhcC-------
Confidence 66521 1 22344555666 999999999998631 2222233322 7889999999998762
Q ss_pred chHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHH
Q 010830 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA 331 (499)
Q Consensus 252 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 331 (499)
+..+|..+..++.+.|++++|++.|.+. -|...|..++.+|.+.|++++|.+.+...++.. ++....+.
T Consensus 1104 -~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~----~e~~Idt~ 1172 (1630)
T 1xi4_A 1104 -EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA----RESYVETE 1172 (1630)
T ss_pred -CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc----ccccccHH
Confidence 4568999999999999999999999653 467788899999999999999999999888753 44444556
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCC
Q 010830 332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411 (499)
Q Consensus 332 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 411 (499)
++.+|++.+++++...+. + .++...|..+...|...|++++|..+|..+ ..|..+...+.+.|+
T Consensus 1173 LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge 1236 (1630)
T 1xi4_A 1173 LIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGE 1236 (1630)
T ss_pred HHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCC
Confidence 999999999988644332 2 356677888999999999999999999985 379999999999999
Q ss_pred hhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc--hHHHHHH
Q 010830 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS--MRDIFDS 489 (499)
Q Consensus 412 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~--a~~~~~~ 489 (499)
+++|.+.+++. .+..+|..+-.+|...|++..|...... +..+...+..++..|.+.|.+ |+.+++.
T Consensus 1237 ~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~ 1305 (1630)
T 1xi4_A 1237 YQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEA 1305 (1630)
T ss_pred HHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999876 3558999999999999999999886653 445677888999999999998 8888877
Q ss_pred HHH
Q 010830 490 LER 492 (499)
Q Consensus 490 ~~~ 492 (499)
.+.
T Consensus 1306 aL~ 1308 (1630)
T 1xi4_A 1306 ALG 1308 (1630)
T ss_pred Hhc
Confidence 654
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.65 E-value=2.8e-14 Score=123.22 Aligned_cols=211 Identities=10% Similarity=-0.018 Sum_probs=135.1
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 010830 110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLL 189 (499)
Q Consensus 110 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 189 (499)
+++...+..+...+.+.|++++|+..|++..+.++.+...+..+...+.+.|++++|+..|++..+.. +.+...+..+-
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 34555666666666667777777777776666666666666666666666666666666666665542 12233333333
Q ss_pred HHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCC
Q 010830 190 SAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269 (499)
Q Consensus 190 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~ 269 (499)
..+... +. . ... .+...|++++|...|++..+. .|++...|..+...+...|+
T Consensus 81 ~~~~~~-~~-----------~---~~~---------~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~ 133 (217)
T 2pl2_A 81 EAYVAL-YR-----------Q---AED---------RERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGE 133 (217)
T ss_dssp HHHHHH-HH-----------T---CSS---------HHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHh-hh-----------h---hhh---------hcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCC
Confidence 333222 00 0 000 111238899999999888654 77788888888999999999
Q ss_pred HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHH
Q 010830 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF 349 (499)
Q Consensus 270 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 349 (499)
+++|+..|++..+.. .+...+..+..+|...|++++|...|++..+.. +.+...+..+...+.+.|++++|+..|
T Consensus 134 ~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---P~~~~~~~~la~~~~~~g~~~~A~~~~ 208 (217)
T 2pl2_A 134 RDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA---PKDLDLRVRYASALLLKGKAEEAARAA 208 (217)
T ss_dssp HHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHTC-----------
T ss_pred hHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHccCHHHHHHHH
Confidence 999999999888766 677888888888899999999999999888864 456788888888888889998888888
Q ss_pred HHHH
Q 010830 350 DQMV 353 (499)
Q Consensus 350 ~~m~ 353 (499)
++..
T Consensus 209 ~~~~ 212 (217)
T 2pl2_A 209 ALEH 212 (217)
T ss_dssp ----
T ss_pred HHHh
Confidence 7654
No 39
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.64 E-value=2e-13 Score=120.92 Aligned_cols=200 Identities=11% Similarity=-0.008 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 010830 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI 192 (499)
Q Consensus 113 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 192 (499)
...|..+...+...|++++|.+.|+++.+..+.+..++..+...|...|++++|.+.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 44566666777777777777777777777666666677777777777777777777777766542 23445555555555
Q ss_pred HccCCchHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCH
Q 010830 193 CRQENQTSRALEFLNRVKK--IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270 (499)
Q Consensus 193 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~ 270 (499)
... |++++|..+++++.. ..+.+...+..+...|.+.|++++|.+.|++..+. .|.+...+..+...+...|++
T Consensus 116 ~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 116 YEQ-KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL---NRNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHT-TCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCH
T ss_pred HHH-hHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHcCCH
Confidence 555 666666666666544 23334455555666666666666666666665443 344455555666666666666
Q ss_pred HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 010830 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI 318 (499)
Q Consensus 271 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 318 (499)
++|...++++.+.. +.+...+..+...+.+.|+.++|.+.++.+.+.
T Consensus 192 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 192 VPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 66666666555432 223444555555555555555555555555553
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.64 E-value=4.6e-14 Score=121.88 Aligned_cols=199 Identities=12% Similarity=-0.034 Sum_probs=122.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHH
Q 010830 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293 (499)
Q Consensus 214 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 293 (499)
+++...+..+...+.+.|++++|...|++..+ ..|++...|..+...+.+.|++++|+..|++..+.. +-+...+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~ 77 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALK---ENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYM 77 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHH
Confidence 34556666666677777777777777777643 366666677777777777777777777777666543 22345556
Q ss_pred HHHHHHHHc-----------CCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHH
Q 010830 294 NALDILVKL-----------NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSL 362 (499)
Q Consensus 294 ~li~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 362 (499)
.+..++... |++++|+..+++..+.. +-+...|..+...|...|++++|+..|++..+.. .+..
T Consensus 78 ~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~ 152 (217)
T 2pl2_A 78 VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN---PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPE 152 (217)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchH
Confidence 666666666 77777777777777653 3356677777777777777777777777777654 5666
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHH
Q 010830 363 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 422 (499)
Q Consensus 363 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 422 (499)
.+..+..+|...|++++|...|+++++.. +.+...+..+...+...|++++|.+.+++.
T Consensus 153 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 153 IRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 67777777777777777777777776643 224556666666777777777777666654
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.63 E-value=2.1e-13 Score=122.25 Aligned_cols=236 Identities=9% Similarity=-0.032 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC--HHHHHHHHH
Q 010830 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD--VVAVNSLLS 190 (499)
Q Consensus 113 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~ 190 (499)
...+......+...|++++|+..|++..+..+.+...+..+...|...|++++|++.++...+.+-.++ ..+|..+..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 345556677778888888888888888887766666788888888888888888888888876431222 233666666
Q ss_pred HHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCH
Q 010830 191 AICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270 (499)
Q Consensus 191 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~ 270 (499)
.+... |++++|...|++..+..+.+..++..+...|...|++++|.+.|++..+ ..|.+...|..+...+...+++
T Consensus 83 ~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 83 ILMKK-GQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR---PTTTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHT-TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC---SSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHc-ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhh---cCCCcHHHHHHHHHHHHHHHHH
Confidence 66666 7777777777776665555666777777777777777777777777643 3565666666666233333477
Q ss_pred HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCC---HhHHHHHHHHHHhcCCCCCCC------HhHHHHHHHHHHcCCC
Q 010830 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLND---STHAVQLWDIMVGIGFNLMPN------LIMYNAVIGLLCNNDD 341 (499)
Q Consensus 271 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~------~~~~~~li~~~~~~~~ 341 (499)
++|++.|++..+.. +.+...+..+..++...|+ .++|...+++..+... -.|+ ..+|..+...|.+.|+
T Consensus 159 ~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~ 236 (272)
T 3u4t_A 159 VKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA-PGGAKYKDELIEANEYIAYYYTINRD 236 (272)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHG-GGGGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHh-cccccchHHHHHHHHHHHHHHHHcCC
Confidence 77777776666543 1224445555555555555 5556666655554310 0112 1345555555555566
Q ss_pred hHHHHHHHHHHHH
Q 010830 342 VDNVFRFFDQMVF 354 (499)
Q Consensus 342 ~~~a~~~~~~m~~ 354 (499)
+++|.+.|++..+
T Consensus 237 ~~~A~~~~~~al~ 249 (272)
T 3u4t_A 237 KVKADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6666665555554
No 42
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.7e-13 Score=121.73 Aligned_cols=222 Identities=15% Similarity=0.110 Sum_probs=123.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 010830 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228 (499)
Q Consensus 149 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~ 228 (499)
.|..+...+...|++++|.+.|++..+.. .+...+..+...+... |++++|...+++
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~-~~~~~A~~~~~~-------------------- 63 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEK-GEYETAISTLND-------------------- 63 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHT-TCHHHHHHHHHH--------------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHc-ccHHHHHHHHHH--------------------
Confidence 44555555555555555555555555443 4444444444444444 555555555444
Q ss_pred hcCCHHHHHHHHHHHhHccCCCCch-------HHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHH
Q 010830 229 KEGNVEEANKTFGEMVERFEWNPEH-------VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301 (499)
Q Consensus 229 ~~g~~~~a~~~~~~~~~~~~~~p~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 301 (499)
..+. .|.+ ..+|..+...+.+.|++++|++.|++..+.. |+ ...+.+
T Consensus 64 --------------a~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~ 117 (258)
T 3uq3_A 64 --------------AVEQ---GREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTK 117 (258)
T ss_dssp --------------HHHH---HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHH
T ss_pred --------------HHHh---CcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHH
Confidence 4332 1111 3445555555555555555555555554432 22 123445
Q ss_pred cCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHH
Q 010830 302 LNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 381 (499)
Q Consensus 302 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 381 (499)
.|++++|...++.+.+.. +.+...+..+...+...|++++|...|++..+.. +.+...|..+...+...|++++|.
T Consensus 118 ~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 193 (258)
T 3uq3_A 118 LRNAEKELKKAEAEAYVN---PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAI 193 (258)
T ss_dssp HHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhHHHHHHHHHHHHHHcC---cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHH
Confidence 556666666666666543 3345566666666666666666666666666542 224556666666666777777777
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 010830 382 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 424 (499)
Q Consensus 382 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 424 (499)
..++.+++.. +.+...+..+...+...|++++|.+.++...+
T Consensus 194 ~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 194 ADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 7776666643 22455666666667777777777777766654
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.62 E-value=3e-13 Score=119.74 Aligned_cols=201 Identities=15% Similarity=0.038 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 010830 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226 (499)
Q Consensus 147 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~ 226 (499)
...|..+...+...|++++|.+.|+++.+.. +.+...+..+...+... |++++|...++++.+..+.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTE-MEPKLADEEYRKALASDSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCcCcHHHHHHHHHH
Confidence 3456666666777777777777777765542 23455555555555555 666666666666554444455555666666
Q ss_pred HHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHh
Q 010830 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306 (499)
Q Consensus 227 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 306 (499)
|...|++++|.+.|+++.+ .+..|.+...+..+...+.+.|++++|.+.+++..+.. +.+...+..+...+...|+++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHH
Confidence 6666666666666666544 12344455555555555556666666666655554432 123444455555555555555
Q ss_pred HHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 010830 307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354 (499)
Q Consensus 307 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 354 (499)
+|...++.+.+.. +.+...+..+...+.+.|+.++|.+.++++.+
T Consensus 193 ~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 193 PARQYYDLFAQGG---GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHHTTS---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC---cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5555555555432 23444455555555555555555555555544
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.62 E-value=2e-12 Score=116.02 Aligned_cols=224 Identities=11% Similarity=0.026 Sum_probs=169.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhc----CCCHHHHHHHHHHHhhCCCCCCHhh
Q 010830 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR----GKQVDEALKFLRVMKGENCFPTLKF 291 (499)
Q Consensus 216 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~ 291 (499)
+..++..+...|...|++++|.+.|++..+ |.+...+..+...|.. .+++++|++.|++..+.+ +...
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD-----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 456667777777788888888888887765 2345567777777777 788888888888877765 5667
Q ss_pred HHHHHHHHHH----cCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHc----CCChHHHHHHHHHHHHCCCCCCHHh
Q 010830 292 FSNALDILVK----LNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN----NDDVDNVFRFFDQMVFHGAFPDSLT 363 (499)
Q Consensus 292 ~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~ 363 (499)
+..+...|.. .++.++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a 148 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK-----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDG 148 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHH
Confidence 7777777777 888888888888887765 66777777788877 788888888888887754 5566
Q ss_pred HHHHHHHHHh----cCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhc----cCChhHHHHHHHHHHHCCCCChHHHHH
Q 010830 364 YNMIFECLIK----NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD----ADEPEIAIEIWNYILENGILPLEASAN 435 (499)
Q Consensus 364 ~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~ 435 (499)
+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|.+.+++..+.+. ...+.
T Consensus 149 ~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~ 222 (273)
T 1ouv_A 149 CTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCF 222 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHH
Confidence 6677777777 788888888888887764 45666777777777 7888888888888877542 45666
Q ss_pred HHHHHHHh----CCChHHHHHHHHHHHHcC
Q 010830 436 ELLVGLRN----LGRLSDVRRFAEEMLNRR 461 (499)
Q Consensus 436 ~ll~~~~~----~g~~~~a~~~~~~m~~~~ 461 (499)
.+...|.+ .+++++|.+.+++..+.|
T Consensus 223 ~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 223 NLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 67777777 788888888888887765
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.62 E-value=4.8e-14 Score=124.08 Aligned_cols=202 Identities=15% Similarity=0.096 Sum_probs=112.8
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 010830 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS 190 (499)
Q Consensus 111 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 190 (499)
.....|..+...+...|++++|...|+++.+..+.+..++..+...+...|++++|.+.|++..+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3455666677777777777777777777777766677777777777777777777777777776543 234555555666
Q ss_pred HHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCH
Q 010830 191 AICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270 (499)
Q Consensus 191 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~ 270 (499)
.+... |++++|..+++++.+..+.+...+..+...+.+.|++++|.+.++++.+. .|++...+..+...+.+.|++
T Consensus 100 ~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 100 VYVVK-EMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL---NENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHT-TCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHh-ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHcCCH
Confidence 66666 66666666666665544555666666666666666666666666666443 444555566666666666666
Q ss_pred HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 010830 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI 318 (499)
Q Consensus 271 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 318 (499)
++|++.++++.+.. +.+..++..+..+|.+.|+.++|.+.++++.+.
T Consensus 176 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 176 DEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 66666666555432 123445555555555556666666665555554
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.61 E-value=4.1e-13 Score=116.43 Aligned_cols=197 Identities=10% Similarity=-0.069 Sum_probs=87.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHh
Q 010830 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK 229 (499)
Q Consensus 150 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~ 229 (499)
|..+...+...|++++|.+.|+.+.+.. +.+...+..+...+... |++++|..+++++....+.+..++..+...|..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYL-KVNDKAQESFRQALSIKPDSAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc-CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 3334444444444444444444433321 11233333333333333 444444444433333223334444455555555
Q ss_pred c-CCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHH
Q 010830 230 E-GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHA 308 (499)
Q Consensus 230 ~-g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 308 (499)
. |++++|.+.++++.+ .+..|.+...+..+...+.+.|++++|+..++++.+.. +.+...+..+..++.+.|++++|
T Consensus 89 ~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred hcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHH
Confidence 5 555555555555544 12334344455555555555555555555555544432 11234444444455555555555
Q ss_pred HHHHHHHHhcCCCCC-CCHhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 010830 309 VQLWDIMVGIGFNLM-PNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353 (499)
Q Consensus 309 ~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 353 (499)
...++.+.+.. + .+...+..+...+...|+.+.+..+++.+.
T Consensus 167 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 167 DYYFKKYQSRV---EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC---CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 55555544432 2 234444444444444555555555544444
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.60 E-value=3.6e-13 Score=120.74 Aligned_cols=236 Identities=12% Similarity=0.053 Sum_probs=179.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCC--HhhHHHH
Q 010830 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT--LKFFSNA 295 (499)
Q Consensus 218 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l 295 (499)
..+......+...|++++|.+.|++..+. .|.+...+..+...+...|++++|++.+++..+.+-.++ ...|..+
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAK---KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHT---TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 44556677788889999999999988654 666666888888899999999999999988887432222 2347788
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 010830 296 LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK 375 (499)
Q Consensus 296 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 375 (499)
...+...|++++|.+.+++..+.. +.+..+|..+...|...|++++|...|++..+. .+.+...|..+...+...+
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~ 156 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRD---TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYNK 156 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS---TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHH
Confidence 888999999999999999988864 446778889999999999999999999888775 2234556666663455566
Q ss_pred CHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCC---hhHHHHHHHHHHHCC-CCCh------HHHHHHHHHHHHhCC
Q 010830 376 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE---PEIAIEIWNYILENG-ILPL------EASANELLVGLRNLG 445 (499)
Q Consensus 376 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~-~~p~------~~~~~~ll~~~~~~g 445 (499)
++++|...|+++++.. +.+...+..+...+...|+ +++|...+++..+.. -.|+ ...|..+...|.+.|
T Consensus 157 ~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (272)
T 3u4t_A 157 EYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINR 235 (272)
T ss_dssp CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcC
Confidence 9999999999988854 2345667777777777777 888888888877531 1122 256777888899999
Q ss_pred ChHHHHHHHHHHHHcC
Q 010830 446 RLSDVRRFAEEMLNRR 461 (499)
Q Consensus 446 ~~~~a~~~~~~m~~~~ 461 (499)
++++|.+.+++..+..
T Consensus 236 ~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 236 DKVKADAAWKNILALD 251 (272)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhcC
Confidence 9999999999998764
No 48
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.60 E-value=4.9e-14 Score=126.60 Aligned_cols=195 Identities=14% Similarity=0.035 Sum_probs=89.2
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHH
Q 010830 185 VNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264 (499)
Q Consensus 185 ~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~ 264 (499)
+..+...+... |++++|...|++..+..+.+..++..+...|...|++++|.+.|++..+. .|.+...+..+...+
T Consensus 46 ~~~l~~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~ 121 (275)
T 1xnf_A 46 LYERGVLYDSL-GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL---DPTYNYAHLNRGIAL 121 (275)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHc-ccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CccccHHHHHHHHHH
Confidence 33334444444 44444444444443333334445555555555555555555555555432 333444555555555
Q ss_pred hcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHH
Q 010830 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN 344 (499)
Q Consensus 265 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 344 (499)
.+.|++++|.+.|+++.+.. |+.......+..+...|+.++|...++...... +++...+. ++..+...++.++
T Consensus 122 ~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~ 195 (275)
T 1xnf_A 122 YYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS---DKEQWGWN-IVEFYLGNISEQT 195 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS---CCCSTHHH-HHHHHTTSSCHHH
T ss_pred HHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CcchHHHH-HHHHHHHhcCHHH
Confidence 55555555555555554432 222222333333344455555555555444432 22222222 4444444455555
Q ss_pred HHHHHHHHHHCCCC--C-CHHhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010830 345 VFRFFDQMVFHGAF--P-DSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389 (499)
Q Consensus 345 a~~~~~~m~~~g~~--p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 389 (499)
|...+++..+.... | +...+..+...|...|++++|...|+++.+
T Consensus 196 a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 196 LMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555544332100 0 123444455555555555555555555554
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.60 E-value=1e-12 Score=113.89 Aligned_cols=198 Identities=8% Similarity=0.006 Sum_probs=90.2
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHH
Q 010830 184 AVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT 263 (499)
Q Consensus 184 ~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~ 263 (499)
.+..+...+... |++++|...++++.+..+.+...+..+...|...|++++|.+.+++..+. .|.+..++..+...
T Consensus 10 ~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 10 IKTQLAMEYMRG-QDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI---KPDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCChHHHHHHHHH
Confidence 344444444444 55555555555544433344445555555555555555555555555332 33344445555555
Q ss_pred HhcC-CCHHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCC
Q 010830 264 LIRG-KQVDEALKFLRVMKGENCFPT-LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD 341 (499)
Q Consensus 264 ~~~~-~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 341 (499)
+... |++++|+..++++.+.+..|+ ...+..+..++...|++++|...++++.+.. +.+...+..+...|.+.|+
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ---PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHTC
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCchHHHHHHHHHHHcCC
Confidence 5555 555555555555444211121 2334444444444455555555554444432 2234444444444444444
Q ss_pred hHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010830 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 388 (499)
Q Consensus 342 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 388 (499)
+++|...++++.+.....+...+..+...+...|+.+++..+++.+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 44444444444432111233333333444444444444444444443
No 50
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.59 E-value=3.6e-13 Score=125.98 Aligned_cols=217 Identities=8% Similarity=-0.008 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 010830 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK-YDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191 (499)
Q Consensus 113 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 191 (499)
..+|+.+...+.+.|++++|++.|++..+.++.+..+|+.+...+...|+ +++|++.|++..+.. +-+...|+.+-.+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 45677777777788888888888888888777777788888888888885 888888888777653 3355666666666
Q ss_pred HHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhc-CCCH
Q 010830 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR-GKQV 270 (499)
Q Consensus 192 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~-~~~~ 270 (499)
+... |++++|+..|+++.+..+.+...|..+..++.+.|++++|+..|+++.+. .|++...|+.+..++.+ .|..
T Consensus 176 ~~~~-g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 176 VEWL-RDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHH-TCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHc-cCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcc
Confidence 6666 77777777777766655666677777777777777777777777777543 56666667776666666 4443
Q ss_pred HHH-----HHHHHHHhhCCCCCCHhhHHHHHHHHHHcC--CHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcC
Q 010830 271 DEA-----LKFLRVMKGENCFPTLKFFSNALDILVKLN--DSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339 (499)
Q Consensus 271 ~~a-----~~~~~~m~~~~~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 339 (499)
++| ++.|++..... +-+...|..+...+.+.| +.++|.+.+.++ +. .+.+...+..+...|.+.
T Consensus 252 ~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~---~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP---SHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT---TCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc---CCCCHHHHHHHHHHHHHH
Confidence 555 24444444322 112334444444444444 344444444444 21 123344444444444443
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.59 E-value=7e-13 Score=124.01 Aligned_cols=238 Identities=11% Similarity=0.006 Sum_probs=202.1
Q ss_pred hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC-hHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 010830 90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGR-FEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVM 168 (499)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 168 (499)
...++.+.|+..|+.+....+-+..+|+.+..++...|+ +++|+..|+++.+.++.+...|..+..++...|++++|+.
T Consensus 108 ~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~ 187 (382)
T 2h6f_A 108 QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELE 187 (382)
T ss_dssp HHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred HHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHH
Confidence 456899999999999988888899999999999999997 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHh-cCCHHHH-----HHHHHH
Q 010830 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK-EGNVEEA-----NKTFGE 242 (499)
Q Consensus 169 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~a-----~~~~~~ 242 (499)
.|+++.+.. +-+...|..+-.++... |++++|+..++++.+..+.+...|+.+..++.+ .|..++| ++.|++
T Consensus 188 ~~~kal~ld-P~~~~a~~~lg~~~~~~-g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~ 265 (382)
T 2h6f_A 188 FIADILNQD-AKNYHAWQHRQWVIQEF-KLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLE 265 (382)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHH-TCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-ccCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHH
Confidence 999998764 45778888888889888 999999999999988778889999999999999 6665777 477888
Q ss_pred HhHccCCCCchHHhHHHHHHHHhcCC--CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcC---------CHhHHHHH
Q 010830 243 MVERFEWNPEHVLAYETFLITLIRGK--QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN---------DSTHAVQL 311 (499)
Q Consensus 243 ~~~~~~~~p~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~---------~~~~a~~~ 311 (499)
..+ +.|++...|+.+...+.+.| ++++|++.+.++ +. ...+...+..+..+|.+.| ..++|.++
T Consensus 266 Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~ 340 (382)
T 2h6f_A 266 MIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALEL 340 (382)
T ss_dssp HHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 755 48888999999999999988 689999999888 33 3445678888888998874 25899999
Q ss_pred HHHH-HhcCCCCCCCHhHHHHHHHHHH
Q 010830 312 WDIM-VGIGFNLMPNLIMYNAVIGLLC 337 (499)
Q Consensus 312 ~~~~-~~~~~~~~~~~~~~~~li~~~~ 337 (499)
++++ .+.+ +.....|..+...+.
T Consensus 341 ~~~l~~~~D---P~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 341 CEILAKEKD---TIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHTTC---GGGHHHHHHHHHHHH
T ss_pred HHHHHHHhC---chhHHHHHHHHHHHH
Confidence 9998 6643 334556665555443
No 52
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.59 E-value=5.4e-14 Score=126.29 Aligned_cols=247 Identities=9% Similarity=-0.076 Sum_probs=140.9
Q ss_pred CCChHHHHHHHHHHHhCCC----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHH
Q 010830 126 NGRFEQMWNAVRVMKEDGV----LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSR 201 (499)
Q Consensus 126 ~~~~~~a~~~~~~m~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~ 201 (499)
.|++++|++.|+++.+... .+..+|..+...|...|++++|.+.|++..+.. +.+..++..+...+... |++++
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~-~~~~~ 95 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQA-GNFDA 95 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHT-TCHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHc-cCHHH
Confidence 3556666666666655431 123455566666666666666666666655442 23455555565666655 66666
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHh
Q 010830 202 ALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281 (499)
Q Consensus 202 a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 281 (499)
|...|++..+..+.+..++..+...|.+.|++++|.+.|+++.+. .|++. .....+..+...|++++|...+++..
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDP-FRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCH-HHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCCh-HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 666666655544455666666667777777777777777776543 44333 23333344455567777777776555
Q ss_pred hCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCC-CCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC
Q 010830 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLM-PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPD 360 (499)
Q Consensus 282 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 360 (499)
... .++... ..++..+...++.++|.+.++...+...... .+...+..+...|.+.|++++|...|++..+. .|+
T Consensus 172 ~~~-~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~ 247 (275)
T 1xnf_A 172 EKS-DKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVH 247 (275)
T ss_dssp HHS-CCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCT
T ss_pred hcC-CcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cch
Confidence 432 122222 2355556666666777777766655320000 12467777788888888888888888888764 342
Q ss_pred HHhHHHHHHHHHhcCCHhHHHHHH
Q 010830 361 SLTYNMIFECLIKNKRVHEVEKFF 384 (499)
Q Consensus 361 ~~~~~~ll~~~~~~g~~~~a~~~~ 384 (499)
. +.....++...|++++|.+.+
T Consensus 248 ~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 N--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp T--CHHHHHHHHHHHHHHHC----
T ss_pred h--HHHHHHHHHHHHHHHhhHHHH
Confidence 2 223344566667777776655
No 53
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.57 E-value=1.5e-11 Score=110.33 Aligned_cols=224 Identities=6% Similarity=-0.020 Sum_probs=193.0
Q ss_pred CchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHH----cCCHhHHHHHHHHHHhcCCCCCCCH
Q 010830 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK----LNDSTHAVQLWDIMVGIGFNLMPNL 326 (499)
Q Consensus 251 p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 326 (499)
|.+..++..+...+...|++++|++.|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +.
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-----~~ 74 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-----YS 74 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-----CH
Confidence 4467788899999999999999999999998843 55778888899999 999999999999999876 78
Q ss_pred hHHHHHHHHHHc----CCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCCCChhh
Q 010830 327 IMYNAVIGLLCN----NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK----NKRVHEVEKFFHEMIKNEWQPTPLN 398 (499)
Q Consensus 327 ~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~ 398 (499)
..+..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...
T Consensus 75 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a 148 (273)
T 1ouv_A 75 NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDG 148 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHH
Confidence 889999999999 999999999999999864 77888889999999 999999999999999976 5667
Q ss_pred HHHHHHHHhc----cCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCccCHHHHH
Q 010830 399 CATAITMLLD----ADEPEIAIEIWNYILENGILPLEASANELLVGLRN----LGRLSDVRRFAEEMLNRRILIYEVTMH 470 (499)
Q Consensus 399 ~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~ 470 (499)
+..+...|.. .+++++|.+.+++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+.
T Consensus 149 ~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 222 (273)
T 1ouv_A 149 CTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCF 222 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHH
Confidence 7788888887 899999999999999865 45677778888989 999999999999999875 366777
Q ss_pred HHHHHHHh----cccc--hHHHHHHHHHHH
Q 010830 471 KLKKAFYN----ESRS--MRDIFDSLERRC 494 (499)
Q Consensus 471 ~ll~~~~~----~g~~--a~~~~~~~~~~~ 494 (499)
.+-..|.. .++. |.+.++..++..
T Consensus 223 ~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 223 NLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 78888887 6776 999888877654
No 54
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.57 E-value=3.4e-13 Score=118.59 Aligned_cols=199 Identities=12% Similarity=0.073 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 010830 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226 (499)
Q Consensus 147 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~ 226 (499)
..+|..+...+...|++++|...|+++.+.. +.+...+..+...+... |++++|...++++.+..+.+..++..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSV-NELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456666666666777777777776666542 23455555555555555 666666666666555444455556666666
Q ss_pred HHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHh
Q 010830 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306 (499)
Q Consensus 227 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 306 (499)
|...|++++|.+.++++.+. .|.+...+..+...+.+.|++++|++.++++.+.. +.+...+..+...+.+.|+++
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA---GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 66666666666666665443 34344555555555556666666666555554432 123444455555555555555
Q ss_pred HHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 010830 307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354 (499)
Q Consensus 307 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 354 (499)
+|...++++.+.. +.+..++..+...|.+.|++++|.+.++++.+
T Consensus 177 ~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 177 EALSQFAAVTEQD---PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC---cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 5555555555442 23344555555555555555555555555544
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.55 E-value=2.7e-13 Score=129.48 Aligned_cols=276 Identities=9% Similarity=-0.015 Sum_probs=143.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHhC----CC-CcCHHHH
Q 010830 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSL----PTFASIFDSYCGAGKYDEAVMSFDVMSMH----GV-EQDVVAV 185 (499)
Q Consensus 115 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~ 185 (499)
.+..+...+...|++++|+..|+++.+.++.+. .+|..+...|...|++++|.+.+++..+. +- .....++
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 344556677788888888888888877765444 46777778888888888888888776532 11 1123344
Q ss_pred HHHHHHHHccCCchHHHHHHHHHHhcc------CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHH
Q 010830 186 NSLLSAICRQENQTSRALEFLNRVKKI------VDPDGDSFAILLEGWEKEGN-----------------VEEANKTFGE 242 (499)
Q Consensus 186 ~~ll~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~ll~~~~~~g~-----------------~~~a~~~~~~ 242 (499)
..+...+... |++++|...+++.... ......++..+...|...|+ +++|.+.+++
T Consensus 130 ~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 130 GNLGNTLKVM-GRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 5555555555 6666666666654331 11223455556666666666 5666555555
Q ss_pred HhHc---cCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCC-CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 010830 243 MVER---FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF-PTLKFFSNALDILVKLNDSTHAVQLWDIMVGI 318 (499)
Q Consensus 243 ~~~~---~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 318 (499)
..+. .+..+....++..+...+...|++++|++.+++..+..-. .+.
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------------------------- 259 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR----------------------------- 259 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-----------------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc-----------------------------
Confidence 4321 0111212334555555555555555555555544321100 000
Q ss_pred CCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCC--C---CCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCC--
Q 010830 319 GFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGA--F---PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE-- 391 (499)
Q Consensus 319 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~---p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-- 391 (499)
.....++..+...|...|++++|...+++..+... . ....++..+...|...|++++|...+++.++..
T Consensus 260 ----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 260 ----AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp ----HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 00112444445555555555555555544433100 0 012344455555555555555555555554321
Q ss_pred ---CCCChhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 010830 392 ---WQPTPLNCATAITMLLDADEPEIAIEIWNYILE 424 (499)
Q Consensus 392 ---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 424 (499)
......++..+...|...|++++|.+.+++..+
T Consensus 336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 000122455555566666666666666666554
No 56
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.54 E-value=1.4e-12 Score=125.70 Aligned_cols=338 Identities=11% Similarity=0.029 Sum_probs=209.9
Q ss_pred hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCh---HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC-----
Q 010830 90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRF---EQMWNAVRVMKEDGVLSLPTFASIFDSYCGAG----- 161 (499)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g----- 161 (499)
...|++++|.++|+.+.+.. ++.++..+...|...|+. ++|++.|+...+. +...+..|...+...+
T Consensus 14 ~~~g~~~~A~~~~~~aa~~g--~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 14 LKRGDTVTAQQNYQQLAELG--YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHT--CCTGGGTCC-------------------------------CHHHHHHHHHTC--CCHH
T ss_pred HhCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCc
Confidence 44678888998888775422 334555666666677777 8898888888765 5555666666555554
Q ss_pred ChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHH---HHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHH--
Q 010830 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSR---ALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA-- 236 (499)
Q Consensus 162 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a-- 236 (499)
++++|.++|++..+.|. ++ .+..|-..|... +..+. +.+.+..... ..+...+..+...|...+.++++
T Consensus 89 ~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~-~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGE-GN--TLIPLAMLYLQY-PHSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHC-GGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCGGGGHH
T ss_pred CHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhC-CCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcccCHH
Confidence 77889999998887663 22 555555556554 43333 3333433332 12355666777777777755444
Q ss_pred --HHHHHHHhHccCCCCchHHhHHHHHHHHhcCC---CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHc----CCHhH
Q 010830 237 --NKTFGEMVERFEWNPEHVLAYETFLITLIRGK---QVDEALKFLRVMKGENCFPTLKFFSNALDILVKL----NDSTH 307 (499)
Q Consensus 237 --~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----~~~~~ 307 (499)
..+++..... ++..+..+...|.+.| +.++|++.|++..+.| .++...+..+...|... ++.++
T Consensus 163 ~a~~~~~~a~~~------~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 163 DVERICKAALNT------TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp HHHHHHHHHTTT------CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred HHHHHHHHHHcC------CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 4444444322 3337788888888888 8889999998888877 34444445566666544 68899
Q ss_pred HHHHHHHHHhcCCCCCCCHhHHHHHHHH-H--HcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC-----CHhH
Q 010830 308 AVQLWDIMVGIGFNLMPNLIMYNAVIGL-L--CNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK-----RVHE 379 (499)
Q Consensus 308 a~~~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-----~~~~ 379 (499)
|..+|+... .| +...+..+... | ...+++++|++.|++..+.| +...+..+...|. .| ++++
T Consensus 236 A~~~~~~aa-~g-----~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~ 305 (452)
T 3e4b_A 236 AQALLEKIA-PG-----YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKA 305 (452)
T ss_dssp HHHHHHHHG-GG-----STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred HHHHHHHHc-CC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHH
Confidence 999999887 55 45566666665 3 45788999999999988865 5666777777666 45 8899
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHhc----cCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHh----CCChHHHH
Q 010830 380 VEKFFHEMIKNEWQPTPLNCATAITMLLD----ADEPEIAIEIWNYILENGILPLEASANELLVGLRN----LGRLSDVR 451 (499)
Q Consensus 380 a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~ 451 (499)
|...|++.. .| +...+..|...|.. ..++++|.++|+...+.|.. .....|-..|.. ..+.++|.
T Consensus 306 A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~G~g~~~d~~~A~ 378 (452)
T 3e4b_A 306 AEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQN---SADFAIAQLFSQGKGTKPDPLNAY 378 (452)
T ss_dssp HHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCT---THHHHHHHHHHSCTTBCCCHHHHH
T ss_pred HHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChH---HHHHHHHHHHHhCCCCCCCHHHHH
Confidence 999998887 33 55666667666665 34889999999988887742 344445555553 45888999
Q ss_pred HHHHHHHHcCC
Q 010830 452 RFAEEMLNRRI 462 (499)
Q Consensus 452 ~~~~~m~~~~~ 462 (499)
.+++...+.|.
T Consensus 379 ~~~~~A~~~g~ 389 (452)
T 3e4b_A 379 VFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHHCCC
Confidence 99998888874
No 57
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.53 E-value=4.9e-12 Score=115.59 Aligned_cols=218 Identities=8% Similarity=-0.025 Sum_probs=171.3
Q ss_pred hhHHHHHHHhcCCCCCCHHHHHHHHHHHHh-------CCCh-------HHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhc
Q 010830 96 SSAVDFFRWAGRGQRLSPYAWNLMVDVLGK-------NGRF-------EQMWNAVRVMKE-DGVLSLPTFASIFDSYCGA 160 (499)
Q Consensus 96 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~-------~~a~~~~~~m~~-~~~~~~~~~~~li~~~~~~ 160 (499)
+.|...|+.+....+.++..|..++..+.. .|++ ++|..+|++..+ ..+.+...|..++..+.+.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 567788888777778889999998888763 5886 899999999998 4677788999999999999
Q ss_pred CChhHHHHHHHHHHhCCCCcC-HH-HHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHH-hcCCHHHHH
Q 010830 161 GKYDEAVMSFDVMSMHGVEQD-VV-AVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE-KEGNVEEAN 237 (499)
Q Consensus 161 g~~~~A~~~~~~m~~~g~~p~-~~-~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~-~~g~~~~a~ 237 (499)
|++++|.++|++..+. .|+ .. .|..+...+.+. |++++|..+|++..+..+.+...|........ ..|+.++|.
T Consensus 113 ~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRA-EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHH-HCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred CCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999875 454 33 788888888888 88999999999887755556666654444322 368999999
Q ss_pred HHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC-CCC--CHhhHHHHHHHHHHcCCHhHHHHHHHH
Q 010830 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN-CFP--TLKFFSNALDILVKLNDSTHAVQLWDI 314 (499)
Q Consensus 238 ~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~ 314 (499)
++|++..+. .|++...|..++..+.+.|++++|..+|++..... +.| ....|..++....+.|+.+.|..++++
T Consensus 190 ~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 190 KIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999888664 56677788888888888899999999988888763 344 355677777777788888888888888
Q ss_pred HHhcC
Q 010830 315 MVGIG 319 (499)
Q Consensus 315 ~~~~~ 319 (499)
+.+..
T Consensus 267 a~~~~ 271 (308)
T 2ond_A 267 RFTAF 271 (308)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 77753
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.53 E-value=6.8e-13 Score=122.61 Aligned_cols=274 Identities=11% Similarity=0.007 Sum_probs=146.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCc-CHHHH
Q 010830 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS----LPTFASIFDSYCGAGKYDEAVMSFDVMSMH----GVEQ-DVVAV 185 (499)
Q Consensus 115 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~ 185 (499)
.+......+...|++++|...|+++.+..+.+ ...+..+...|...|++++|.+.+++..+. +-.+ ...++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 34455667777888888888888877766544 356777777888888888888887775432 1111 23445
Q ss_pred HHHHHHHHccCCchHHHHHHHHHHhccC--CCC----HHHHHHHHHHHHhcCC--------------------HHHHHHH
Q 010830 186 NSLLSAICRQENQTSRALEFLNRVKKIV--DPD----GDSFAILLEGWEKEGN--------------------VEEANKT 239 (499)
Q Consensus 186 ~~ll~~~~~~~~~~~~a~~~~~~~~~~~--~~~----~~~~~~ll~~~~~~g~--------------------~~~a~~~ 239 (499)
..+...+... |++++|...+++..+.. ..+ ..++..+...|...|+ +++|.+.
T Consensus 87 ~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 87 GNLGNTLKVL-GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-cCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 5555666666 77777777776653311 111 3356666677777777 6677666
Q ss_pred HHHHhHc---cCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC----C-CCCHhhHHHHHHHHHHcCCHhHHHHH
Q 010830 240 FGEMVER---FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN----C-FPTLKFFSNALDILVKLNDSTHAVQL 311 (499)
Q Consensus 240 ~~~~~~~---~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~-~p~~~~~~~li~~~~~~~~~~~a~~~ 311 (499)
+++..+. .+..+.....+..+...+...|++++|.+.+++..+.. . .....++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6654321 11122223455666666666677777666666554311 0 00112444555555555666666665
Q ss_pred HHHHHhcCCCC---CCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHC----CCCC-CHHhHHHHHHHHHhcCCHhHHHHH
Q 010830 312 WDIMVGIGFNL---MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH----GAFP-DSLTYNMIFECLIKNKRVHEVEKF 383 (499)
Q Consensus 312 ~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 383 (499)
+++..+..... .....++..+...|...|++++|...+++..+. +..+ ...++..+...|...|++++|...
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 55554321000 001334444555555555555555555544331 0000 012334444444445555555555
Q ss_pred HHHHHH
Q 010830 384 FHEMIK 389 (499)
Q Consensus 384 ~~~~~~ 389 (499)
+++..+
T Consensus 326 ~~~a~~ 331 (338)
T 3ro2_A 326 AEKHLE 331 (338)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544443
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.53 E-value=7.3e-13 Score=126.09 Aligned_cols=243 Identities=12% Similarity=0.026 Sum_probs=135.9
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCc-
Q 010830 110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS----LPTFASIFDSYCGAGKYDEAVMSFDVMSMH----GVEQ- 180 (499)
Q Consensus 110 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p- 180 (499)
......+......+...|++++|...|++..+.++.+ ..+|..+...|...|++++|...+++.... +-.|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 3445566677778888888888888888888776544 346777888888888888888888776432 1112
Q ss_pred CHHHHHHHHHHHHccCCchHHHHHHHHHHhccCC--C----CHHHHHHHHHHHHhcCC--------------------HH
Q 010830 181 DVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD--P----DGDSFAILLEGWEKEGN--------------------VE 234 (499)
Q Consensus 181 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~--~----~~~~~~~ll~~~~~~g~--------------------~~ 234 (499)
...++..+...+... |++++|...+++.....+ . ...++..+...|...|+ ++
T Consensus 86 ~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 86 EAKASGNLGNTLKVL-GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 133455555666666 777777777766543110 1 13356666667777777 66
Q ss_pred HHHHHHHHHhHc---cCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCC-CCC----HhhHHHHHHHHHHcCCHh
Q 010830 235 EANKTFGEMVER---FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC-FPT----LKFFSNALDILVKLNDST 306 (499)
Q Consensus 235 ~a~~~~~~~~~~---~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~~~~~ 306 (499)
+|.+.+++..+. .+..+....++..+...+...|++++|+..+++..+..- .++ ..++..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 666666654331 111222234555566666666666666666655443110 011 124444555555555555
Q ss_pred HHHHHHHHHHhcCCC--CCC-CHhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 010830 307 HAVQLWDIMVGIGFN--LMP-NLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353 (499)
Q Consensus 307 ~a~~~~~~~~~~~~~--~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 353 (499)
+|...+++..+.... ..+ ...++..+...|...|++++|...+++..
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 555555554432100 000 03344444455555555555555554443
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.53 E-value=4.9e-13 Score=127.71 Aligned_cols=281 Identities=14% Similarity=0.062 Sum_probs=177.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCH----HHHHHHHHHHHccCCchHHHHHHHHHHhcc------CCCCHH
Q 010830 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDV----VAVNSLLSAICRQENQTSRALEFLNRVKKI------VDPDGD 218 (499)
Q Consensus 149 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~ 218 (499)
.+..+...+...|++++|.+.|++..+.+ ..+. ..+..+...+... |++++|...+++.... ......
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYL-GDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 45556677888888888888888887653 1122 3555666666666 7777777777665331 122234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhHcc---CCCCchHHhHHHHHHHHhcCCC----------HHHHHHHHHHHhhCCC
Q 010830 219 SFAILLEGWEKEGNVEEANKTFGEMVERF---EWNPEHVLAYETFLITLIRGKQ----------VDEALKFLRVMKGENC 285 (499)
Q Consensus 219 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~ 285 (499)
++..+...|...|++++|.+.+++..+.. +-.+....++..+...|...|+ .++|...
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~--------- 198 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA--------- 198 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH---------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH---------
Confidence 55555666666666666666665543320 1112123344444444444444 0111000
Q ss_pred CCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhc----CCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCC-CCC
Q 010830 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI----GFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGA-FPD 360 (499)
Q Consensus 286 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~ 360 (499)
+++|.+.+++..+. +. ......++..+...|...|++++|...+++..+... ..+
T Consensus 199 -------------------~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 199 -------------------LTRAVEFYQENLKLMRDLGD-RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred -------------------HHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 44454444443321 10 112345777788888888888888888887765210 011
Q ss_pred ----HHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC-----CChhhHHHHHHHHhccCChhHHHHHHHHHHHC----CC
Q 010830 361 ----SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ-----PTPLNCATAITMLLDADEPEIAIEIWNYILEN----GI 427 (499)
Q Consensus 361 ----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~ 427 (499)
...+..+...|...|++++|...+++..+.... ....++..+...+...|++++|.+.+++..+. +.
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 237788889999999999999999988764210 11457788899999999999999999988752 21
Q ss_pred -CChHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 010830 428 -LPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460 (499)
Q Consensus 428 -~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 460 (499)
.....++..+...|.+.|++++|...+++..+.
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 122457778889999999999999999998865
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.52 E-value=1.3e-12 Score=124.46 Aligned_cols=303 Identities=14% Similarity=0.040 Sum_probs=151.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC----HHHHHHHHHHHHccCCchHHHHHHHHHHhc-----c-CCC
Q 010830 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD----VVAVNSLLSAICRQENQTSRALEFLNRVKK-----I-VDP 215 (499)
Q Consensus 146 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~-----~-~~~ 215 (499)
....+......+...|++++|...|++..+.+ +.+ ..++..+...+... |++++|...+++... + .+.
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYL-HDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHhccccHH
Confidence 44556666777777777777777777776652 112 23455555566666 666666666665432 1 111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCC---chHHhHHHHHHHHhcCCC--------------------HHH
Q 010830 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP---EHVLAYETFLITLIRGKQ--------------------VDE 272 (499)
Q Consensus 216 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p---~~~~~~~~li~~~~~~~~--------------------~~~ 272 (499)
...++..+...|...|++++|...+++..+...-.+ ....++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 234455555566666666666666665543210000 012244444455555555 444
Q ss_pred HHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHH
Q 010830 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352 (499)
Q Consensus 273 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 352 (499)
|++.+++..+. ..+.+ .......++..+...|...|++++|...+++.
T Consensus 166 A~~~~~~al~~-------------------------------~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 213 (406)
T 3sf4_A 166 AVDFYEENLSL-------------------------------VTALG-DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR 213 (406)
T ss_dssp HHHHHHHHHHH-------------------------------HHHTT-CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------------------------------HHhcc-CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 44444433221 00000 00111234555555555566666666665555
Q ss_pred HHCCC-CCC----HHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHhccCChhHHHHHHHHH
Q 010830 353 VFHGA-FPD----SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ-PT----PLNCATAITMLLDADEPEIAIEIWNYI 422 (499)
Q Consensus 353 ~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~m 422 (499)
.+... .++ ...+..+...|...|++++|...+++..+.... .+ ..++..+...|...|++++|.+.+++.
T Consensus 214 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 293 (406)
T 3sf4_A 214 LLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 43100 011 124555555666666666666666655432100 01 334555666666666666666666665
Q ss_pred HHC----CCCC-hHHHHHHHHHHHHhCCChHHHHHHHHHHHHc----CCc-cCHHHHHHHHHHHHhcccc
Q 010830 423 LEN----GILP-LEASANELLVGLRNLGRLSDVRRFAEEMLNR----RIL-IYEVTMHKLKKAFYNESRS 482 (499)
Q Consensus 423 ~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~ll~~~~~~g~~ 482 (499)
.+. +-.+ ...++..+...|.+.|++++|...+++..+. +.. ....++..+...+...|+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 531 1111 1345555666666677777777776665532 111 1233455555555555543
No 62
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.51 E-value=4e-12 Score=106.54 Aligned_cols=167 Identities=16% Similarity=0.189 Sum_probs=131.5
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 010830 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191 (499)
Q Consensus 112 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 191 (499)
++..|..+...|.+.|++++|++.|++..+.++.+..+|..+...|.+.|++++|...+....... .-+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 567788888888888899999888888888888888888888888888888888888888876653 3345555555566
Q ss_pred HHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHH
Q 010830 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD 271 (499)
Q Consensus 192 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~ 271 (499)
+... ++++.+...+++.....+.+...+..+...|.+.|++++|++.|++..+. .|.+..+|..+..+|.+.|+++
T Consensus 83 ~~~~-~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 83 NFMI-DEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI---KPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHc-CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh---cchhhhHHHHHHHHHHHCCCHH
Confidence 6666 88888888888877766667778888888888888888888888887554 6767777888888888888888
Q ss_pred HHHHHHHHHhhC
Q 010830 272 EALKFLRVMKGE 283 (499)
Q Consensus 272 ~a~~~~~~m~~~ 283 (499)
+|++.|++..+.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 888888877664
No 63
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.50 E-value=6.9e-12 Score=118.54 Aligned_cols=234 Identities=7% Similarity=-0.045 Sum_probs=166.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhHccCCCCc---hHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC----CC-C-CCHhhHH
Q 010830 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPE---HVLAYETFLITLIRGKQVDEALKFLRVMKGE----NC-F-PTLKFFS 293 (499)
Q Consensus 223 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~-p~~~~~~ 293 (499)
....+...|++++|.+.|++..+...-.++ ...+|..+...|...|++++|+..+++..+. +- . ....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556677889999999999888653222222 3467888888999999999999988876642 10 1 1134677
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHhcCCCC---CCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHC----CC-CCCHHhHH
Q 010830 294 NALDILVKLNDSTHAVQLWDIMVGIGFNL---MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH----GA-FPDSLTYN 365 (499)
Q Consensus 294 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~~~~ 365 (499)
.+..+|...|++++|...+++..+..... .....++..+...|...|++++|.+.|++..+. +. .....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 78888899999999999998877542000 111347888889999999999999999888762 23 23356788
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHC----CCCCChhhHHHHHHHHhccCC---hhHHHHHHHHHHHCCCCCh-HHHHHHH
Q 010830 366 MIFECLIKNKRVHEVEKFFHEMIKN----EWQPTPLNCATAITMLLDADE---PEIAIEIWNYILENGILPL-EASANEL 437 (499)
Q Consensus 366 ~ll~~~~~~g~~~~a~~~~~~~~~~----~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~-~~~~~~l 437 (499)
.+...|.+.|++++|...+++..+. +-+.....+..+...+...|+ +++|..+++.. +..++ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 8888999999999999999888763 111122235667777888888 66666666654 33333 3456677
Q ss_pred HHHHHhCCChHHHHHHHHHHHH
Q 010830 438 LVGLRNLGRLSDVRRFAEEMLN 459 (499)
Q Consensus 438 l~~~~~~g~~~~a~~~~~~m~~ 459 (499)
...|.+.|++++|...+++..+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 7889999999999999998765
No 64
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.50 E-value=6.7e-10 Score=110.92 Aligned_cols=418 Identities=9% Similarity=0.023 Sum_probs=263.9
Q ss_pred hHHHHHHhcCCCCCHHHHHHHHHh--hcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC---hHHHHHHHHHHHh
Q 010830 67 DIESALACTGIIPTPDLVHEVLQL--SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGR---FEQMWNAVRVMKE 141 (499)
Q Consensus 67 ~l~~~l~~~~~~~~~~~~~~~l~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~ 141 (499)
.+...+...+ -+......++.. ..+..+.+..+|+.+...++.+...|...+..-.+.|+ ++.+.++|++...
T Consensus 54 ~lE~~l~~np--~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~ 131 (679)
T 4e6h_A 54 KLNDMIEEQP--TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLS 131 (679)
T ss_dssp HHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHCc--CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Confidence 3555555554 356666666653 34667778888877777777777888888877777777 8888888888877
Q ss_pred CCC--CCHHHHHHHHHHHHhcCCh--------hHHHHHHHHHHh-CCC-CcC-HHHHHHHHHHHHc---------cCCch
Q 010830 142 DGV--LSLPTFASIFDSYCGAGKY--------DEAVMSFDVMSM-HGV-EQD-VVAVNSLLSAICR---------QENQT 199 (499)
Q Consensus 142 ~~~--~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p~-~~~~~~ll~~~~~---------~~~~~ 199 (499)
..+ +++..|...+....+.++. +.+.++|+.... .|. .++ ...|...+..... . +++
T Consensus 132 ~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq-~~~ 210 (679)
T 4e6h_A 132 KELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ-QRV 210 (679)
T ss_dssp SSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH-HHH
T ss_pred hcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH-hHH
Confidence 763 6777777777766665543 334466666543 365 443 4566666654432 2 345
Q ss_pred HHHHHHHHHHhccCCCC--HHHHHHHHHHHHhcCC-------------HHHHHHHHHHHhHcc-CC---C----------
Q 010830 200 SRALEFLNRVKKIVDPD--GDSFAILLEGWEKEGN-------------VEEANKTFGEMVERF-EW---N---------- 250 (499)
Q Consensus 200 ~~a~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~-------------~~~a~~~~~~~~~~~-~~---~---------- 250 (499)
+.+..+|+.... ++.. ..+|......-...+. ++.|...+.++.... ++ .
T Consensus 211 ~~~R~iy~raL~-iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~ 289 (679)
T 4e6h_A 211 QYIRKLYKTLLC-QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATES 289 (679)
T ss_dssp HHHHHHHHHHTT-SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTT
T ss_pred HHHHHHHHHHHh-CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhc
Confidence 667777777664 2211 2333322221111111 122333333321100 11 0
Q ss_pred --C-------chHHhHHHHHHHHhcCC-------CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHH-HHHH
Q 010830 251 --P-------EHVLAYETFLITLIRGK-------QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV-QLWD 313 (499)
Q Consensus 251 --p-------~~~~~~~~li~~~~~~~-------~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~-~~~~ 313 (499)
| .....|...+..-...+ ..+.+..+|++..... .-+...|...+..+...|+.+.|. ++++
T Consensus 290 ~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~ 368 (679)
T 4e6h_A 290 NLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLK 368 (679)
T ss_dssp TSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHH
T ss_pred cCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 1 01234444444433332 1234455666665532 235666777777777889988996 9999
Q ss_pred HHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCC---------CCCC------------HHhHHHHHHHHH
Q 010830 314 IMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG---------AFPD------------SLTYNMIFECLI 372 (499)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---------~~p~------------~~~~~~ll~~~~ 372 (499)
+.... ++.+...|-..+...-+.|++++|.++|+++.+.. -.|+ ...|...+....
T Consensus 369 rAi~~---~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~er 445 (679)
T 4e6h_A 369 LGQQC---IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMK 445 (679)
T ss_dssp HHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh---CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHH
Confidence 99875 46677788888899999999999999999987631 0132 236778888888
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcc-CChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHH
Q 010830 373 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA-DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 451 (499)
Q Consensus 373 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 451 (499)
+.|+.+.|..+|..+++.-.......|...+..-.+. ++.+.|.++|+...+. +.-+...+...+......|+.+.|.
T Consensus 446 R~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR 524 (679)
T 4e6h_A 446 RIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVK 524 (679)
T ss_dssp HHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHH
Confidence 8899999999999998861122334444333333344 4589999999998875 3445667778888888899999999
Q ss_pred HHHHHHHHcCCcc--CHHHHHHHHHHHHhcccc--hHHHHHHHHHH
Q 010830 452 RFAEEMLNRRILI--YEVTMHKLKKAFYNESRS--MRDIFDSLERR 493 (499)
Q Consensus 452 ~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~--a~~~~~~~~~~ 493 (499)
.+|++.+.....+ ....|...++-=.+.|+. +.++.+++.+.
T Consensus 525 ~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 525 SLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999998764322 346788888888888888 66666666654
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.48 E-value=3.9e-11 Score=109.60 Aligned_cols=225 Identities=8% Similarity=0.036 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCch-------HHH
Q 010830 130 EQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQT-------SRA 202 (499)
Q Consensus 130 ~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~-------~~a 202 (499)
++|..+|++.....+.+...|..++..+...++. +... |++ ++|
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~----------------------------l~~~-g~~~~~~~~~~~A 83 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKL----------------------------LAEK-GDMNNAKLFSDEA 83 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------------------------HHHT-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchh----------------------------hhhc-cchhhcccchHHH
Confidence 5677777777777666777777777666543210 0112 332 555
Q ss_pred HHHHHHHhcc-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHH-hHHHHHHHHhcCCCHHHHHHHHHHH
Q 010830 203 LEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL-AYETFLITLIRGKQVDEALKFLRVM 280 (499)
Q Consensus 203 ~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~~li~~~~~~~~~~~a~~~~~~m 280 (499)
..+|++.... .+.+...|..++..+.+.|++++|.++|++..+ +.|.+.. .|..++..+.+.|++++|..+|++.
T Consensus 84 ~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 84 ANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 5555555542 233444566666666666666666666666643 3444443 5666666666666666666666666
Q ss_pred hhCCCCCCHhhHHHHHHHHH-HcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCC-CC
Q 010830 281 KGENCFPTLKFFSNALDILV-KLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG-AF 358 (499)
Q Consensus 281 ~~~~~~p~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~ 358 (499)
.+.. +.+...|........ ..|+.+.|.++|+..++.. +.+...|..++..+.+.|++++|..+|++..+.. +.
T Consensus 161 ~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~ 236 (308)
T 2ond_A 161 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY---GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC
Confidence 5543 122333332222221 2577777777777777653 4466777777777777778888888887777752 34
Q ss_pred C--CHHhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010830 359 P--DSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 390 (499)
Q Consensus 359 p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 390 (499)
| ....|..++....+.|+.++|..+++++.+.
T Consensus 237 p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4 3456777777777777888887777777764
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.48 E-value=1.6e-12 Score=120.04 Aligned_cols=278 Identities=13% Similarity=0.054 Sum_probs=151.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC----HHHHHHHHHHHHccCCchHHHHHHHHHHhc-----c-CCCCHH
Q 010830 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD----VVAVNSLLSAICRQENQTSRALEFLNRVKK-----I-VDPDGD 218 (499)
Q Consensus 149 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~-----~-~~~~~~ 218 (499)
.+......+...|++++|...|++..+.. +.+ ...+..+...+... |++++|...+++... + ......
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYL-HDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 44555667778888888888888877653 112 24556666666666 777777777766533 1 111244
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCC---chHHhHHHHHHHHhcCCC--------------------HHHHHH
Q 010830 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNP---EHVLAYETFLITLIRGKQ--------------------VDEALK 275 (499)
Q Consensus 219 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p---~~~~~~~~li~~~~~~~~--------------------~~~a~~ 275 (499)
++..+...|...|++++|.+.+++..+...-.+ ....++..+...+...|+ +++|.+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 556666666677777777766666543211011 012245555555555555 555555
Q ss_pred HHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 010830 276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH 355 (499)
Q Consensus 276 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 355 (499)
.+++..+. .. ..+. ......++..+...|...|++++|...+++..+.
T Consensus 165 ~~~~a~~~----------------------------~~---~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 212 (338)
T 3ro2_A 165 LYEENLSL----------------------------VT---ALGD-RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 212 (338)
T ss_dssp HHHHHHHH----------------------------HH---HHTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----------------------------HH---hcCC-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 55443221 00 0000 0112334555555555555555555555554431
Q ss_pred ----CCC-CCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHhccCChhHHHHHHHHHHHC
Q 010830 356 ----GAF-PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ-PT----PLNCATAITMLLDADEPEIAIEIWNYILEN 425 (499)
Q Consensus 356 ----g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 425 (499)
+.. .....+..+...+...|++++|...+++..+.... .+ ..++..+...+...|++++|...+++..+.
T Consensus 213 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 213 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 000 01124555556666666666666666665542100 11 345556666677777777777777666531
Q ss_pred ----CC-CChHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 010830 426 ----GI-LPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460 (499)
Q Consensus 426 ----~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 460 (499)
+- .....++..+...|.+.|++++|...+++..+.
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 293 AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 11 111335666777777788888888888777653
No 67
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.47 E-value=4.3e-11 Score=115.37 Aligned_cols=335 Identities=11% Similarity=0.013 Sum_probs=222.2
Q ss_pred cCCc---hhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC-----ChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCh
Q 010830 92 YDSP---SSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNG-----RFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKY 163 (499)
Q Consensus 92 ~~~~---~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~ 163 (499)
.|++ ++|...|+.+... ++..+..+...+...+ ++++|++.|+...+.+.++ .+..|...|...+..
T Consensus 48 ~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~--A~~~Lg~~y~~~~~~ 122 (452)
T 3e4b_A 48 TRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGN--TLIPLAMLYLQYPHS 122 (452)
T ss_dssp --------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSS--CHHHHHHHHHHCGGG
T ss_pred cCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCCC
Confidence 4555 8888888877644 7777888887566655 7889999999999988655 677777888776654
Q ss_pred h---HHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCc----hHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC---CH
Q 010830 164 D---EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ----TSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG---NV 233 (499)
Q Consensus 164 ~---~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~----~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g---~~ 233 (499)
+ ++.+.+......| +......+-..|... +. .+.+..+++....+ +...+..+...|.+.| +.
T Consensus 123 ~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~-~~~~~~~~~a~~~~~~a~~~---~~~a~~~Lg~~~~~~g~~~~~ 195 (452)
T 3e4b_A 123 FPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ-GTYDQHLDDVERICKAALNT---TDICYVELATVYQKKQQPEQQ 195 (452)
T ss_dssp CTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH-TCGGGGHHHHHHHHHHHTTT---CTTHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC-CCcccCHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCcccH
Confidence 4 4455555555444 344455555566555 53 44445555554443 3348888999999999 99
Q ss_pred HHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcC----CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH-H--HHcCCHh
Q 010830 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRG----KQVDEALKFLRVMKGENCFPTLKFFSNALDI-L--VKLNDST 306 (499)
Q Consensus 234 ~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~--~~~~~~~ 306 (499)
++|.+.|++..+. | +.+...+..+...|... +++++|+++|++.. .| +...+..+-.. + ...++.+
T Consensus 196 ~~A~~~~~~aa~~-g--~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~ 268 (452)
T 3e4b_A 196 AELLKQMEAGVSR-G--TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVE 268 (452)
T ss_dssp HHHHHHHHHHHHT-T--CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHH
T ss_pred HHHHHHHHHHHHC-C--CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHH
Confidence 9999999999775 3 33555557777888766 79999999999987 43 44556666665 3 4689999
Q ss_pred HHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCC-----ChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCH
Q 010830 307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND-----DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK----NKRV 377 (499)
Q Consensus 307 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~ 377 (499)
+|.+.|++..+.| +...+..|...|. .| ++++|++.|++.. . -+...+..+...|.. ..+.
T Consensus 269 ~A~~~~~~Aa~~g-----~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~ 338 (452)
T 3e4b_A 269 QMMKYLDNGRAAD-----QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYP 338 (452)
T ss_dssp HHHHHHHHHHHTT-----CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCH
T ss_pred HHHHHHHHHHHCC-----CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCH
Confidence 9999999999887 6778888888887 44 8999999999887 3 356667777766665 3499
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHHhc----cCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHH
Q 010830 378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLD----ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 453 (499)
Q Consensus 378 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 453 (499)
++|...|+...+.|. ......|...|.. ..+.++|..+|+...+.|.. +....-..+......++..+|..+
T Consensus 339 ~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~ 414 (452)
T 3e4b_A 339 QKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRL 414 (452)
T ss_dssp HHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999998773 3455566666653 46899999999999988743 322222222222333466677777
Q ss_pred HHHHHH
Q 010830 454 AEEMLN 459 (499)
Q Consensus 454 ~~~m~~ 459 (499)
.++..+
T Consensus 415 ~~~~~~ 420 (452)
T 3e4b_A 415 VQQELA 420 (452)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.47 E-value=4.7e-12 Score=122.92 Aligned_cols=214 Identities=10% Similarity=-0.007 Sum_probs=142.7
Q ss_pred chHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHH
Q 010830 198 QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV-EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276 (499)
Q Consensus 198 ~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~ 276 (499)
.++++...++......+.+...+..+...|...|++ ++|.+.|++..+. .|++...|..+...|.+.|++++|++.
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL---EPELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 355555566655554455667777777777777777 7777777777553 566667777777777777777777777
Q ss_pred HHHHhhCCCCCCHhhHHHHHHHHHHc---------CCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcC--------
Q 010830 277 LRVMKGENCFPTLKFFSNALDILVKL---------NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN-------- 339 (499)
Q Consensus 277 ~~~m~~~~~~p~~~~~~~li~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-------- 339 (499)
|++..+.. |+...+..+..++... |++++|++.+++..+.. +.+...|..+..+|...
T Consensus 160 ~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~~~~ 234 (474)
T 4abn_A 160 FSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD---VLDGRSWYILGNAYLSLYFNTGQNP 234 (474)
T ss_dssp HHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHhhcccc
Confidence 77776654 5556666677777777 77777777777777654 34566777777777766
Q ss_pred CChHHHHHHHHHHHHCCCC--CCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHH
Q 010830 340 DDVDNVFRFFDQMVFHGAF--PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 417 (499)
Q Consensus 340 ~~~~~a~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 417 (499)
|++++|+..|++..+.... -+...|..+..+|...|++++|...|++..+.. +-+...+..+...+...|++++|.+
T Consensus 235 g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777663110 255667777777777777777777777776643 1234456666666666666666665
Q ss_pred HHH
Q 010830 418 IWN 420 (499)
Q Consensus 418 ~~~ 420 (499)
.+.
T Consensus 314 ~~~ 316 (474)
T 4abn_A 314 SKG 316 (474)
T ss_dssp HTT
T ss_pred Hhc
Confidence 443
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.45 E-value=5.2e-13 Score=122.12 Aligned_cols=173 Identities=13% Similarity=0.089 Sum_probs=111.6
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhC--------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC----
Q 010830 109 QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED--------GVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH---- 176 (499)
Q Consensus 109 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 176 (499)
.+.+..+|..+...+...|++++|..+|+++.+. ......++..+...|...|++++|.+.+++..+.
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3445678888889999999999999999888773 3344567888888899999999999888887643
Q ss_pred --CC-CcCHHHHHHHHHHHHccCCchHHHHHHHHHHhcc--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 010830 177 --GV-EQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI--------VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245 (499)
Q Consensus 177 --g~-~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 245 (499)
+- .....++..+...+... |++++|..++++..+. .+.....+..+...|...|++++|.+.|++..+
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKR-GKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11 12244555566666666 7777777776665431 122334555666666666666666666666544
Q ss_pred cc-----CCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhh
Q 010830 246 RF-----EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282 (499)
Q Consensus 246 ~~-----~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 282 (499)
.. +..|....++..+...|...|++++|.+.++++.+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 182 IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 20 11333444556666666666666666666665543
No 70
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.44 E-value=8.2e-10 Score=110.29 Aligned_cols=391 Identities=8% Similarity=0.011 Sum_probs=268.6
Q ss_pred CchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC---hhHHHHHH
Q 010830 94 SPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK---YDEAVMSF 170 (499)
Q Consensus 94 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~ 170 (499)
.+.+....|+......+.|...|..++..+.+.+.++.+..+|+++...-+.+...|...+..-.+.|+ ++.+.++|
T Consensus 47 ~~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CCSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 345555556655555788999999999999999999999999999999988889999999999999999 99999999
Q ss_pred HHHHhCC-CCcCHHHHHHHHHHHHccCCch--------HHHHHHHHHHhc--cC-CC-CHHHHHHHHHHHHh--------
Q 010830 171 DVMSMHG-VEQDVVAVNSLLSAICRQENQT--------SRALEFLNRVKK--IV-DP-DGDSFAILLEGWEK-------- 229 (499)
Q Consensus 171 ~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~--------~~a~~~~~~~~~--~~-~~-~~~~~~~ll~~~~~-------- 229 (499)
++..... ..|+...|...+.-..+. ++. +...++|+.... |. .+ +...|...+.....
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~-~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKK-NDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHH-SCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHh-cccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 9998763 238888888888766555 432 345577777654 44 34 45788888877543
Q ss_pred -cCCHHHHHHHHHHHhHccCCCCchHHhHH---HHHHHHhcC----------CCHHHHHHHHHHHhh--CCCC-------
Q 010830 230 -EGNVEEANKTFGEMVERFEWNPEHVLAYE---TFLITLIRG----------KQVDEALKFLRVMKG--ENCF------- 286 (499)
Q Consensus 230 -~g~~~~a~~~~~~~~~~~~~~p~~~~~~~---~li~~~~~~----------~~~~~a~~~~~~m~~--~~~~------- 286 (499)
.++++.+.++|++.... .... ...+|. .+...+... .+++.|...+.++.. .++.
T Consensus 206 eq~~~~~~R~iy~raL~i-P~~~-~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~ 283 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQ-PMDC-LESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITL 283 (679)
T ss_dssp HHHHHHHHHHHHHHHTTS-CCSS-HHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSS
T ss_pred HHhHHHHHHHHHHHHHhC-ccHH-HHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccc
Confidence 34578889999998642 2221 223443 333332111 122334444444321 1111
Q ss_pred --------C-----C---HhhHHHHHHHHHHcC-------CHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChH
Q 010830 287 --------P-----T---LKFFSNALDILVKLN-------DSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD 343 (499)
Q Consensus 287 --------p-----~---~~~~~~li~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 343 (499)
| + ...|...+..--..+ ..+.+..+|++.+.. ++-+...|-..+..+...|+.+
T Consensus 284 ~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~---~p~~~~lW~~ya~~~~~~~~~~ 360 (679)
T 4e6h_A 284 NQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH---VCFAPEIWFNMANYQGEKNTDS 360 (679)
T ss_dssp TTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHHSCCT
T ss_pred ccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHhcCcHH
Confidence 1 0 123444443322222 123456788888876 4567889999888888889999
Q ss_pred HHH-HHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCC---------CCCC------------hhhHHH
Q 010830 344 NVF-RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE---------WQPT------------PLNCAT 401 (499)
Q Consensus 344 ~a~-~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---------~~p~------------~~~~~~ 401 (499)
+|. ++|++.... ++.+...|-..+...-+.|++++|.++|+.+++.. -.|+ ..+|..
T Consensus 361 ~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~ 439 (679)
T 4e6h_A 361 TVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCV 439 (679)
T ss_dssp THHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHH
Confidence 996 999998874 44456667778888889999999999999998641 0132 235777
Q ss_pred HHHHHhccCChhHHHHHHHHHHHC-C-CCChHHHHHHHHHHHHhC-CChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHh
Q 010830 402 AITMLLDADEPEIAIEIWNYILEN-G-ILPLEASANELLVGLRNL-GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 478 (499)
Q Consensus 402 li~~~~~~g~~~~a~~~~~~m~~~-~-~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 478 (499)
.+....+.|+.+.|..+|....+. + ..+ ..|...+..-.+. ++.+.|.++|+..++. ..-+...+...++-...
T Consensus 440 y~~~erR~~~l~~AR~vf~~A~~~~~~~~~--~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~ 516 (679)
T 4e6h_A 440 YMNTMKRIQGLAASRKIFGKCRRLKKLVTP--DIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIY 516 (679)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHTGGGSCT--HHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCCh--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHh
Confidence 777777889999999999999875 2 223 3343333333344 5599999999999876 33456667788887777
Q ss_pred cccc--hHHHHHHHHHHH
Q 010830 479 ESRS--MRDIFDSLERRC 494 (499)
Q Consensus 479 ~g~~--a~~~~~~~~~~~ 494 (499)
.|+. |+.+|+..++..
T Consensus 517 ~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 517 VNEESQVKSLFESSIDKI 534 (679)
T ss_dssp HTCHHHHHHHHHHHTTTS
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 8877 999999877654
No 71
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.42 E-value=3.3e-11 Score=100.90 Aligned_cols=166 Identities=12% Similarity=0.063 Sum_probs=97.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHH
Q 010830 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225 (499)
Q Consensus 146 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~ 225 (499)
+..+|..+...|.+.|++++|++.|++..+.. +-+..++..+...+... |++++|...++......+.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDI-GLPNDAIESLKKFVVLDTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 44566666777777777777777777665542 23445555555556655 66666666666655544555555666666
Q ss_pred HHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCH
Q 010830 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS 305 (499)
Q Consensus 226 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 305 (499)
.+...++++.|.+.+.+..+. .|.+...+..+...+.+.|++++|++.|++..+.. +.+..++..+..+|.+.|++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCH
Confidence 666666666666666665433 44455556666666666666666666666555432 12344555555555555555
Q ss_pred hHHHHHHHHHHh
Q 010830 306 THAVQLWDIMVG 317 (499)
Q Consensus 306 ~~a~~~~~~~~~ 317 (499)
++|.+.|++.++
T Consensus 158 ~~A~~~~~~al~ 169 (184)
T 3vtx_A 158 DEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 555555555554
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.42 E-value=1.3e-11 Score=119.72 Aligned_cols=207 Identities=11% Similarity=0.005 Sum_probs=103.5
Q ss_pred hhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCh-HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010830 96 SSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRF-EQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174 (499)
Q Consensus 96 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 174 (499)
+.++..++......+.+...|..+...+...|++ ++|++.|++..+.++.+..+|..+...|...|++++|.+.|++..
T Consensus 85 ~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 164 (474)
T 4abn_A 85 EKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGAL 164 (474)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444555544444455666666666666666666 666666666666665556666666666666666666666666665
Q ss_pred hCCCCcCHHHHHHHHHHHHccC---------CchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc--------CCHHHHH
Q 010830 175 MHGVEQDVVAVNSLLSAICRQE---------NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE--------GNVEEAN 237 (499)
Q Consensus 175 ~~g~~p~~~~~~~ll~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------g~~~~a~ 237 (499)
+. .|+...+..+-..+. .. |++++|+..|++..+..+.+...|..+..+|... |++++|.
T Consensus 165 ~~--~p~~~~~~~lg~~~~-~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~ 241 (474)
T 4abn_A 165 TH--CKNKVSLQNLSMVLR-QLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQAL 241 (474)
T ss_dssp TT--CCCHHHHHHHHHHHT-TCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred hh--CCCHHHHHHHHHHHH-HhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 54 344433333333332 22 3444444444444443333444444444444444 4444444
Q ss_pred HHHHHHhHccCCCC---chHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHH
Q 010830 238 KTFGEMVERFEWNP---EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV 309 (499)
Q Consensus 238 ~~~~~~~~~~~~~p---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 309 (499)
+.|++..+. .| ++...|..+..+|...|++++|++.|++..+.. +-+...+..+..++...|+.++|.
T Consensus 242 ~~~~~al~~---~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi 312 (474)
T 4abn_A 242 SAYAQAEKV---DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLL 312 (474)
T ss_dssp HHHHHHHHH---CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh---CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 444444332 33 344444444444444444444444444443322 112233333444444444444443
No 73
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.41 E-value=7.1e-11 Score=111.54 Aligned_cols=233 Identities=10% Similarity=0.016 Sum_probs=174.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHhhC----CCCC-CHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCC----CCCHhHHH
Q 010830 260 FLITLIRGKQVDEALKFLRVMKGE----NCFP-TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL----MPNLIMYN 330 (499)
Q Consensus 260 li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~ 330 (499)
....+...|++++|+..|++..+. +-.+ ...++..+..+|...|+++.|...+++..+..... .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 566788899999999999998764 2111 24577888899999999999999999887642001 11245788
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHCCC-CCC----HHhHHHHHHHHHhcCCHhHHHHHHHHHHHC----CC-CCChhhHH
Q 010830 331 AVIGLLCNNDDVDNVFRFFDQMVFHGA-FPD----SLTYNMIFECLIKNKRVHEVEKFFHEMIKN----EW-QPTPLNCA 400 (499)
Q Consensus 331 ~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~-~p~~~~~~ 400 (499)
.+...|...|++++|...|++..+... ..+ ..++..+...|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 899999999999999999998875210 011 247888899999999999999999998872 22 33456788
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHC----CCCChHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHcCCccC-HHHHHHH
Q 010830 401 TAITMLLDADEPEIAIEIWNYILEN----GILPLEASANELLVGLRNLGR---LSDVRRFAEEMLNRRILIY-EVTMHKL 472 (499)
Q Consensus 401 ~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~m~~~~~~p~-~~~~~~l 472 (499)
.+...+...|++++|.+.+++..+. +-......+..+...+...|+ +++|..++++. +..++ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 8999999999999999999987752 212222335667777888898 77777777665 33333 4467788
Q ss_pred HHHHHhcccc--hHHHHHHHHHHHh
Q 010830 473 KKAFYNESRS--MRDIFDSLERRCK 495 (499)
Q Consensus 473 l~~~~~~g~~--a~~~~~~~~~~~~ 495 (499)
...|...|+. |.+.++..++..+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 8999999998 9998888876543
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.41 E-value=4.4e-12 Score=115.92 Aligned_cols=171 Identities=17% Similarity=0.127 Sum_probs=129.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-------CCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhcc------
Q 010830 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMH-------GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI------ 212 (499)
Q Consensus 146 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~------ 212 (499)
...++..+...+...|++++|..+|+++.+. .......++..+...+... |++++|..++++....
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQ-NKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHhC
Confidence 4568899999999999999999999998763 2233456677777788888 9999999998886542
Q ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcc-----CCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC--
Q 010830 213 --VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF-----EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-- 283 (499)
Q Consensus 213 --~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-- 283 (499)
.+....++..+...|...|++++|.+.|++..+.. +..|.....+..+...+...|++++|++.++++.+.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 12345678888888999999999999888886642 333545667888888888899999999888887653
Q ss_pred ----CCCC-CHhhHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 010830 284 ----NCFP-TLKFFSNALDILVKLNDSTHAVQLWDIMVG 317 (499)
Q Consensus 284 ----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 317 (499)
+..| ...++..+..+|...|++++|...++++.+
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2122 234667777888888888888888888775
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.39 E-value=2.6e-10 Score=107.40 Aligned_cols=235 Identities=9% Similarity=-0.051 Sum_probs=162.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhHccCCCC---chHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC----CC-CC-CHhhH
Q 010830 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNP---EHVLAYETFLITLIRGKQVDEALKFLRVMKGE----NC-FP-TLKFF 292 (499)
Q Consensus 222 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~p-~~~~~ 292 (499)
.....+...|++++|...|++..+...-.+ ....++..+...|...|+++.|+..+++..+. +- .+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 345556788899999988888765322112 23457788888888899999998888876542 11 11 24466
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHhcCCCC---CCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHC----CCCCCHHhHH
Q 010830 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNL---MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH----GAFPDSLTYN 365 (499)
Q Consensus 293 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~~~ 365 (499)
..+..+|...|++++|.+.+++..+..... .....+++.+...|...|++++|.+.|++..+. +......++.
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 265 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF 265 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence 778888888999999999888877531000 112457788888899999999999999888761 2222356778
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCC----CCCChhhHHHHHHHHhccCC---hhHHHHHHHHHHHCCCCCh-HHHHHHH
Q 010830 366 MIFECLIKNKRVHEVEKFFHEMIKNE----WQPTPLNCATAITMLLDADE---PEIAIEIWNYILENGILPL-EASANEL 437 (499)
Q Consensus 366 ~ll~~~~~~g~~~~a~~~~~~~~~~~----~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~-~~~~~~l 437 (499)
.+...+.+.|++++|...+++..+.. -+.....+..+...+...++ +++|...++. .+..++ ...+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHH
Confidence 88888999999999999999887742 11122345556666667777 6666666654 333332 2455667
Q ss_pred HHHHHhCCChHHHHHHHHHHHH
Q 010830 438 LVGLRNLGRLSDVRRFAEEMLN 459 (499)
Q Consensus 438 l~~~~~~g~~~~a~~~~~~m~~ 459 (499)
...|.+.|++++|...+++..+
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 7888999999999999988764
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.38 E-value=4.9e-11 Score=99.62 Aligned_cols=163 Identities=13% Similarity=0.081 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 010830 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC 193 (499)
Q Consensus 114 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 193 (499)
..|..+...+...|++++|.+.|+++.+..+.+..++..+...+...|++++|.+.++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3455555566666666666666666655555555566666666666666666666666655432 223444444555555
Q ss_pred ccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHH
Q 010830 194 RQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273 (499)
Q Consensus 194 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a 273 (499)
.. |++++|...++++.+..+.+...+..+...+.+.|++++|.+.+++..+. .|++...+..+...+...|++++|
T Consensus 88 ~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 88 QV-QKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL---RPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred Hh-cCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc---CccchHHHHHHHHHHHHcCCHHHH
Confidence 55 55555555555554444444555555555555555555555555555432 333444555555555555555555
Q ss_pred HHHHHHHh
Q 010830 274 LKFLRVMK 281 (499)
Q Consensus 274 ~~~~~~m~ 281 (499)
.+.+++..
T Consensus 164 ~~~~~~~~ 171 (186)
T 3as5_A 164 LPHFKKAN 171 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 77
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.33 E-value=5.5e-11 Score=120.11 Aligned_cols=168 Identities=15% Similarity=0.102 Sum_probs=150.4
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 010830 110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLL 189 (499)
Q Consensus 110 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 189 (499)
+-+..+|+.+...|.+.|++++|++.|++..+..+.+..+|..+...|.+.|++++|++.|++..+.. +-+...|..+-
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 34578999999999999999999999999999988889999999999999999999999999998763 34577888888
Q ss_pred HHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCC
Q 010830 190 SAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269 (499)
Q Consensus 190 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~ 269 (499)
..+... |++++|++.|++..+..+.+...|+.+...|.+.|++++|++.|++..+. .|++...|..+..++...|+
T Consensus 85 ~~l~~~-g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l---~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 85 NTLKEM-QDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL---KPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHhhhhhHHHhccc
Confidence 899988 99999999999987766778899999999999999999999999999654 88889999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 010830 270 VDEALKFLRVMKG 282 (499)
Q Consensus 270 ~~~a~~~~~~m~~ 282 (499)
+++|.+.+++..+
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999988877654
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.32 E-value=1.9e-09 Score=101.22 Aligned_cols=239 Identities=11% Similarity=-0.024 Sum_probs=116.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhHccCCCC---chHHhHHHHHHHHhcCCCHHHHHHHHHHHhh----CCCC--C-CHh
Q 010830 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNP---EHVLAYETFLITLIRGKQVDEALKFLRVMKG----ENCF--P-TLK 290 (499)
Q Consensus 221 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~--p-~~~ 290 (499)
+.+...+...|++++|.+.+++..+...-.. ....++..+...+...|++++|...+++..+ .+.. | ...
T Consensus 57 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 136 (373)
T 1hz4_A 57 SVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEF 136 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHH
Confidence 3344444455555555555554433100000 0112234445555555666666555555432 1111 1 122
Q ss_pred hHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCC--CHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCH-HhHH--
Q 010830 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP--NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS-LTYN-- 365 (499)
Q Consensus 291 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~-- 365 (499)
.+..+...+...|++++|...+++..+......+ ...++..+...+...|++++|...+++.......++. ..+.
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 216 (373)
T 1hz4_A 137 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 216 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH
Confidence 3344555556666666666666665543210101 2344555666666666777776666665542111110 1111
Q ss_pred ---HHHHHHHhcCCHhHHHHHHHHHHHCCCCCC---hhhHHHHHHHHhccCChhHHHHHHHHHHH----CCCCChH-HHH
Q 010830 366 ---MIFECLIKNKRVHEVEKFFHEMIKNEWQPT---PLNCATAITMLLDADEPEIAIEIWNYILE----NGILPLE-ASA 434 (499)
Q Consensus 366 ---~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p~~-~~~ 434 (499)
..+..+...|++++|...+++..+....+. ...+..+...+...|++++|...++...+ .|..++. ..+
T Consensus 217 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 296 (373)
T 1hz4_A 217 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 296 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 122335566777777777666654321111 11344555666667777777777766543 2221222 244
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHH
Q 010830 435 NELLVGLRNLGRLSDVRRFAEEMLN 459 (499)
Q Consensus 435 ~~ll~~~~~~g~~~~a~~~~~~m~~ 459 (499)
..+..++...|+.++|...+++...
T Consensus 297 ~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 297 LLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4455666677777777777776653
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.32 E-value=2e-09 Score=101.38 Aligned_cols=307 Identities=9% Similarity=-0.001 Sum_probs=201.5
Q ss_pred CCHHHHHHHHHHH--HhCCChHHHHHHHHHHHhCC--C-CC--HHHHHHHHHH--HHhcCChhHHH---------HHHHH
Q 010830 111 LSPYAWNLMVDVL--GKNGRFEQMWNAVRVMKEDG--V-LS--LPTFASIFDS--YCGAGKYDEAV---------MSFDV 172 (499)
Q Consensus 111 ~~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~~--~-~~--~~~~~~li~~--~~~~g~~~~A~---------~~~~~ 172 (499)
|+..+-+.+-..| .+.+++++|.++++++.... . .+ ...|-.++.. ..-.+.++.+. +.++.
T Consensus 8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (378)
T 3q15_A 8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET 87 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence 4444555555555 77888888888888776533 1 22 2233333332 11122333333 66666
Q ss_pred HHhCCCCcCH-HH--HHHH-HHHHHccCCchHHHHHHHHHHhccC--CC----CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010830 173 MSMHGVEQDV-VA--VNSL-LSAICRQENQTSRALEFLNRVKKIV--DP----DGDSFAILLEGWEKEGNVEEANKTFGE 242 (499)
Q Consensus 173 m~~~g~~p~~-~~--~~~l-l~~~~~~~~~~~~a~~~~~~~~~~~--~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~ 242 (499)
+.......+. .. |... -..+... |++++|...|++..+.. .+ ...++..+...|...|+++.|...+++
T Consensus 88 i~~~~~~~~~~l~~~~~~~~g~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 88 IETPQKKLTGLLKYYSLFFRGMYEFDQ-KEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhccCCCCccHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 5432111111 11 1222 2233455 99999999999875521 12 245788889999999999999999888
Q ss_pred HhHccCC----CCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC----CCCC-CHhhHHHHHHHHHHcCCHhHHHHHHH
Q 010830 243 MVERFEW----NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE----NCFP-TLKFFSNALDILVKLNDSTHAVQLWD 313 (499)
Q Consensus 243 ~~~~~~~----~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~ 313 (499)
..+...- .+....+++.+...|...|++++|++.|++..+. +-.+ ...++..+..+|...|++++|...++
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7653221 2223567888999999999999999999886652 2111 23467778889999999999999999
Q ss_pred HHHh-----cCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCC----CCCCHHhHHHHHHHHHhcCC---HhHHH
Q 010830 314 IMVG-----IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG----AFPDSLTYNMIFECLIKNKR---VHEVE 381 (499)
Q Consensus 314 ~~~~-----~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g----~~p~~~~~~~ll~~~~~~g~---~~~a~ 381 (499)
+..+ .. +....++..+...|.+.|++++|...+++..+.. .......+..+...+...++ +++|+
T Consensus 247 ~al~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al 323 (378)
T 3q15_A 247 KAAKVSREKVP---DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLL 323 (378)
T ss_dssp HHHHHHHHHCG---GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHhhCC---hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 8886 32 3347788889999999999999999999988632 11122345555556666777 77777
Q ss_pred HHHHHHHHCCCCC-ChhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 010830 382 KFFHEMIKNEWQP-TPLNCATAITMLLDADEPEIAIEIWNYILE 424 (499)
Q Consensus 382 ~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 424 (499)
.+++.. +..+ ....+..+...|...|++++|.+.|++..+
T Consensus 324 ~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 324 SYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777652 2222 234566788899999999999999998764
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.31 E-value=2.6e-09 Score=100.29 Aligned_cols=205 Identities=13% Similarity=-0.020 Sum_probs=119.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhHcc---CCC--CchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCC--C--CHh
Q 010830 220 FAILLEGWEKEGNVEEANKTFGEMVERF---EWN--PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF--P--TLK 290 (499)
Q Consensus 220 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~--p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--p--~~~ 290 (499)
+..+...+...|++++|.+.+++..+.. +.. |.....+..+...+...|++++|...+++..+..-. + ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 4455566666777777776666654421 111 323345555666777777777777777765542211 1 123
Q ss_pred hHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHH----HHHHHHHcCCChHHHHHHHHHHHHCCCCCC---HHh
Q 010830 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYN----AVIGLLCNNDDVDNVFRFFDQMVFHGAFPD---SLT 363 (499)
Q Consensus 291 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~ 363 (499)
++..+...+...|++++|...+++................ ..+..+...|++++|...+++.......+. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 4556666777778888887777776643100001111111 223346677888888888777655321111 224
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHC----CCCCCh-hhHHHHHHHHhccCChhHHHHHHHHHHH
Q 010830 364 YNMIFECLIKNKRVHEVEKFFHEMIKN----EWQPTP-LNCATAITMLLDADEPEIAIEIWNYILE 424 (499)
Q Consensus 364 ~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~ 424 (499)
+..+...+...|++++|...++...+. +..++. ..+..+..++...|+.++|...+++..+
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 556667778888888888888777543 211122 2455566777788888888888887664
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.30 E-value=3.9e-10 Score=94.05 Aligned_cols=162 Identities=14% Similarity=-0.005 Sum_probs=87.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 010830 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299 (499)
Q Consensus 220 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 299 (499)
+..+...+...|++++|.+.++++.+ ..|.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYD---ADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCC---TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH---hCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 44444555555555555555555532 234444555555555555555555555555554432 12344455555555
Q ss_pred HHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhH
Q 010830 300 VKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE 379 (499)
Q Consensus 300 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 379 (499)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|...+++..+.. ..+...+..+...+...|++++
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN---PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC---cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence 55566666666665555542 3345555555666666666666666666655532 2234555556666666666666
Q ss_pred HHHHHHHHHH
Q 010830 380 VEKFFHEMIK 389 (499)
Q Consensus 380 a~~~~~~~~~ 389 (499)
|...++.+.+
T Consensus 163 A~~~~~~~~~ 172 (186)
T 3as5_A 163 ALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666665554
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.26 E-value=9.1e-10 Score=95.57 Aligned_cols=208 Identities=11% Similarity=-0.012 Sum_probs=157.5
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHH
Q 010830 110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSL 188 (499)
Q Consensus 110 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 188 (499)
+.|+..|......+...|++++|++.|+...+..+ ++...+..+..++...|++++|++.|++..+.. +-+...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 34678888888999999999999999999998886 788888889999999999999999999988763 2345667777
Q ss_pred HHHHHccCCchHHHHHHHHHHhccCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCc--hHHhHHH
Q 010830 189 LSAICRQENQTSRALEFLNRVKKIVDPDG-------DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE--HVLAYET 259 (499)
Q Consensus 189 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~~ 259 (499)
...+... |++++|...+++..+..+.+. ..|..+...+...|++++|.+.|++.. ...|+ +...|..
T Consensus 83 ~~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~ 158 (228)
T 4i17_A 83 SAAYRDM-KNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYS 158 (228)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHH
T ss_pred HHHHHHc-ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHH
Confidence 7888888 999999999999877656666 568888888999999999999999995 45887 6778888
Q ss_pred HHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHH
Q 010830 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333 (499)
Q Consensus 260 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 333 (499)
+..+|...| ...++++...+ ..+...|.... ....+.+++|...+++..+.. +.+..+...+-
T Consensus 159 l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~---p~~~~~~~~l~ 221 (228)
T 4i17_A 159 LGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS---PNRTEIKQMQD 221 (228)
T ss_dssp HHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC---CCCHHHHHHHH
Confidence 888886544 34455555443 22334444333 234566899999999999864 33444444443
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.25 E-value=4.2e-10 Score=113.73 Aligned_cols=165 Identities=16% Similarity=0.171 Sum_probs=115.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHH
Q 010830 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295 (499)
Q Consensus 216 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 295 (499)
+...|+.+...|.+.|++++|++.|++..+. .|++..+|+.+..+|.+.|++++|++.|++..+.. +-+...|..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l---~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV---FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 4566777777777777777777777777543 66667777777777777777777777777766643 1235667777
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhc
Q 010830 296 LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFP-DSLTYNMIFECLIKN 374 (499)
Q Consensus 296 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~ 374 (499)
..+|.+.|++++|++.|++.++.. +-+...|+.+...|.+.|++++|++.|++..+. .| +...|..+..++...
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~---P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~ 158 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN---PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIV 158 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhc
Confidence 777777777777777777777654 345677777777777777777777777777763 33 346677777777777
Q ss_pred CCHhHHHHHHHHHHH
Q 010830 375 KRVHEVEKFFHEMIK 389 (499)
Q Consensus 375 g~~~~a~~~~~~~~~ 389 (499)
|++++|.+.++++++
T Consensus 159 g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 159 CDWTDYDERMKKLVS 173 (723)
T ss_dssp TCCTTHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 777777777766554
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.23 E-value=1.5e-10 Score=103.87 Aligned_cols=207 Identities=8% Similarity=0.015 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhHcc-----CCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC------C-
Q 010830 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERF-----EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE------N- 284 (499)
Q Consensus 217 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~- 284 (499)
..++..+...|...|++++|...+++..+.. +-.|....++..+...|...|++++|++.+++..+. .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 4456666666666677776666666665421 223434556666677777777777777776665542 1
Q ss_pred CCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhc-----CCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHC----
Q 010830 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI-----GFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH---- 355 (499)
Q Consensus 285 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---- 355 (499)
......++..+...|...|++++|...+++..+. +.+.+....++..+...|...|++++|...+++..+.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 1122445566666677777777777777666653 0001123456667777777777777777777766542
Q ss_pred ---CCCCCHH-hHHHHHHHHHhcCCHhH------HHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 010830 356 ---GAFPDSL-TYNMIFECLIKNKRVHE------VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 424 (499)
Q Consensus 356 ---g~~p~~~-~~~~ll~~~~~~g~~~~------a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 424 (499)
...+... .|..+...+...+.... +...++.... ..+....++..+...|...|++++|.+++++..+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1122222 22222222222222211 1111111110 1112234566777777778888888888777654
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.22 E-value=1.6e-10 Score=103.76 Aligned_cols=65 Identities=11% Similarity=0.167 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhHcc-----CCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHh
Q 010830 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERF-----EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281 (499)
Q Consensus 217 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 281 (499)
..++..+...|...|++++|.+.|++..+.. +..|....++..+...|...|++++|...+++..
T Consensus 127 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 127 AKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444555555555555555555555553310 1123234445555555555555555555555544
No 86
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.21 E-value=3.6e-09 Score=91.74 Aligned_cols=204 Identities=9% Similarity=0.029 Sum_probs=157.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHH
Q 010830 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224 (499)
Q Consensus 145 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll 224 (499)
.++..+......+...|++++|.+.|+...+..-.++...+..+..++... |++++|+..+++..+..+.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNI-KKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHh-hcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 356788899999999999999999999998775337777777788888888 9999999999998876677888999999
Q ss_pred HHHHhcCCHHHHHHHHHHHhHccCCCCchH-------HhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCC---HhhHHH
Q 010830 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHV-------LAYETFLITLIRGKQVDEALKFLRVMKGENCFPT---LKFFSN 294 (499)
Q Consensus 225 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~ 294 (499)
..|...|++++|.+.|++..+. .|++. ..|..+...+...|++++|++.|++..+.. |+ ...+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~ 158 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALYS 158 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHHH
Confidence 9999999999999999999764 66666 558888889999999999999999988764 54 456666
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHH
Q 010830 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM 366 (499)
Q Consensus 295 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 366 (499)
+..+|... +..+++.+...+ ..+...|..... ...+.+++|+..|++..+. .|+......
T Consensus 159 l~~~~~~~-----~~~~~~~a~~~~---~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l--~p~~~~~~~ 218 (228)
T 4i17_A 159 LGVLFYNN-----GADVLRKATPLA---SSNKEKYASEKA--KADAAFKKAVDYLGEAVTL--SPNRTEIKQ 218 (228)
T ss_dssp HHHHHHHH-----HHHHHHHHGGGT---TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHHhcc---cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhc--CCCCHHHHH
Confidence 66666544 344456666553 234444544433 3346689999999999884 455443333
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.13 E-value=3.5e-09 Score=95.71 Aligned_cols=131 Identities=11% Similarity=-0.004 Sum_probs=79.7
Q ss_pred HhHHHHHHHHHHcC-CChHHHHHHHHHHHHCCCC-CC----HHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChh--
Q 010830 326 LIMYNAVIGLLCNN-DDVDNVFRFFDQMVFHGAF-PD----SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL-- 397 (499)
Q Consensus 326 ~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-- 397 (499)
..+++.+...|... |++++|+..|++..+.... .+ ..++..+...+.+.|++++|...|++..+........
T Consensus 117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 196 (292)
T 1qqe_A 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW 196 (292)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccH
Confidence 34566677777775 8888888777776652100 01 2456677777888888888888888877754222211
Q ss_pred ----hHHHHHHHHhccCChhHHHHHHHHHHHCCCCChH------HHHHHHHHHHH--hCCChHHHHHHHHHHH
Q 010830 398 ----NCATAITMLLDADEPEIAIEIWNYILENGILPLE------ASANELLVGLR--NLGRLSDVRRFAEEML 458 (499)
Q Consensus 398 ----~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~------~~~~~ll~~~~--~~g~~~~a~~~~~~m~ 458 (499)
.|..+..++...|++++|...|++..+ +.|+. ..+..++.++. ..+++++|+..|+++.
T Consensus 197 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 455666677777888888888877664 22221 12334455553 3456777777776554
No 88
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.12 E-value=9.4e-10 Score=111.63 Aligned_cols=174 Identities=17% Similarity=0.038 Sum_probs=119.7
Q ss_pred hhcCCchhHHHHHHHhc--------CCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Q 010830 90 LSYDSPSSAVDFFRWAG--------RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAG 161 (499)
Q Consensus 90 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g 161 (499)
...+++++|++.|+.+. ...+.+...|..+...+.+.|++++|++.|++..+.++.+...|..+..+|...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 45677777777777766 4455666777777777777777777777777777777767777777777777777
Q ss_pred ChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010830 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFG 241 (499)
Q Consensus 162 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 241 (499)
++++|.+.|++..+.. +-+...+..+-.++.+. |++++ +..|++..+..+.+...|..+..+|.+.|++++|.+.|+
T Consensus 482 ~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~-g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 482 DYDSATKHFTEVLDTF-PGELAPKLALAATAELA-GNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp CHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHH-TCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc-CChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777777776553 23455666666666666 77777 777777666555666777777777777777777777777
Q ss_pred HHhHccCCCCchHHhHHHHHHHHhcCCC
Q 010830 242 EMVERFEWNPEHVLAYETFLITLIRGKQ 269 (499)
Q Consensus 242 ~~~~~~~~~p~~~~~~~~li~~~~~~~~ 269 (499)
+.. ...|++...|..+..++...++
T Consensus 559 ~al---~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 559 EVP---PTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TSC---TTSTTHHHHHHHHHHHTC----
T ss_pred hhc---ccCcccHHHHHHHHHHHHccCC
Confidence 763 4466666667666666655444
No 89
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.11 E-value=4.6e-09 Score=82.20 Aligned_cols=127 Identities=18% Similarity=0.263 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 010830 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194 (499)
Q Consensus 115 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 194 (499)
.|..+...+...|++++|.++|+++.+.++.+...+..+...+...|++++|.++++++.+.+ +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 345555556666666666666666655554455555555555555666666666665554432 2233334444444444
Q ss_pred cCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010830 195 QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243 (499)
Q Consensus 195 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 243 (499)
. |++++|..+++++.+..+.+..++..+...+.+.|++++|.+.++++
T Consensus 82 ~-~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 82 Q-GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp T-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred h-cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 4 44444444444443333333344444444444444444444444444
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.11 E-value=4.4e-09 Score=95.03 Aligned_cols=161 Identities=13% Similarity=-0.021 Sum_probs=84.2
Q ss_pred HHHhcCChhHHHHHHHHHHhC----CCCcC-HHHHHHHHHHHHccCCchHHHHHHHHHHhccC----CC--CHHHHHHHH
Q 010830 156 SYCGAGKYDEAVMSFDVMSMH----GVEQD-VVAVNSLLSAICRQENQTSRALEFLNRVKKIV----DP--DGDSFAILL 224 (499)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~----~~--~~~~~~~ll 224 (499)
.|...|++++|.+.|++..+. |-.++ ..+|+.+-..|... |++++|+..+++..... .+ -..+++.+.
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~-g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSG-GNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445556666666665554322 11111 23444555555555 55555555555443200 00 123556666
Q ss_pred HHHHhc-CCHHHHHHHHHHHhHccCCCC---chHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCH------hhHHH
Q 010830 225 EGWEKE-GNVEEANKTFGEMVERFEWNP---EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL------KFFSN 294 (499)
Q Consensus 225 ~~~~~~-g~~~~a~~~~~~~~~~~~~~p---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~~~~ 294 (499)
..|... |++++|...|++..+...-.. ....+++.+...+.+.|++++|+..|++..+....... ..|..
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 667764 777777777776644210000 00235666666777777777777777766654322111 13455
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHh
Q 010830 295 ALDILVKLNDSTHAVQLWDIMVG 317 (499)
Q Consensus 295 li~~~~~~~~~~~a~~~~~~~~~ 317 (499)
+..++...|+++.|...+++..+
T Consensus 205 lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 55666666777777766666655
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.10 E-value=6.4e-09 Score=92.28 Aligned_cols=135 Identities=12% Similarity=0.026 Sum_probs=83.1
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CcC-HHH
Q 010830 110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS---LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGV-EQD-VVA 184 (499)
Q Consensus 110 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~~ 184 (499)
+.+...+-.+...+.+.|++++|+..|+.+.+..+.+ ...+..+..+|.+.|++++|...|+...+..- .|. ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 4455666667777777788888888888777776544 56777777777788888888888877766421 112 334
Q ss_pred HHHHHHHHHc--------cCCchHHHHHHHHHHhccCCCCHHHH-----------------HHHHHHHHhcCCHHHHHHH
Q 010830 185 VNSLLSAICR--------QENQTSRALEFLNRVKKIVDPDGDSF-----------------AILLEGWEKEGNVEEANKT 239 (499)
Q Consensus 185 ~~~ll~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~~~-----------------~~ll~~~~~~g~~~~a~~~ 239 (499)
+..+..++.. . |++++|...|+++.+..+.+.... ..+...|.+.|++++|...
T Consensus 92 ~~~lg~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQ-TDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCC-HHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcccccccc-hhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 4445555555 5 777777777777655433333333 3334445555555555555
Q ss_pred HHHHhH
Q 010830 240 FGEMVE 245 (499)
Q Consensus 240 ~~~~~~ 245 (499)
|+++.+
T Consensus 171 ~~~~l~ 176 (261)
T 3qky_A 171 YEAVFD 176 (261)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.07 E-value=9.2e-09 Score=80.46 Aligned_cols=129 Identities=18% Similarity=0.280 Sum_probs=78.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 010830 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228 (499)
Q Consensus 149 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~ 228 (499)
.|..+...+...|++++|.++++.+.+.+ +.+...+..+...+... |++++|..+++++....+.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHh-cCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 45666667777777777777777766543 23455555555666666 66666666666665544445556666666666
Q ss_pred hcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhh
Q 010830 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282 (499)
Q Consensus 229 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 282 (499)
..|++++|.+.++++.+. .|.+...+..+...+.+.|++++|...++++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALEL---DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 666666666666666443 343445555666666666666666666665544
No 93
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.06 E-value=4e-09 Score=94.98 Aligned_cols=175 Identities=10% Similarity=-0.038 Sum_probs=127.0
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 010830 100 DFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVE 179 (499)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 179 (499)
.+.+++....+.+...+..+...+.+.|++++|...|++..+..+.+...+..+...+.+.|++++|.+.++..... .
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~ 181 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--D 181 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--G
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--h
Confidence 33344433345566778888888899999999999999999888888888999999999999999999999888655 4
Q ss_pred cCHHHHHHHHHH-HHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCch--HHh
Q 010830 180 QDVVAVNSLLSA-ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH--VLA 256 (499)
Q Consensus 180 p~~~~~~~ll~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~ 256 (499)
|+.......... +... ++.+.|...+++.....+.+...+..+...+...|++++|.+.|+++.+. .|++ ...
T Consensus 182 p~~~~~~~~~~~~l~~~-~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~---~p~~~~~~a 257 (287)
T 3qou_A 182 QDTRYQGLVAQIELLXQ-AADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX---DLTAADGQT 257 (287)
T ss_dssp CSHHHHHHHHHHHHHHH-HTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTGGGGHH
T ss_pred cchHHHHHHHHHHHHhh-cccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc---ccccccchH
Confidence 555443333332 4444 66667777777766656667777777778888888888888888777664 4433 556
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHH
Q 010830 257 YETFLITLIRGKQVDEALKFLRVM 280 (499)
Q Consensus 257 ~~~li~~~~~~~~~~~a~~~~~~m 280 (499)
+..++..+...|+.++|...|++.
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHH
Confidence 777777777777777777766654
No 94
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.01 E-value=1.1e-06 Score=85.20 Aligned_cols=358 Identities=8% Similarity=-0.022 Sum_probs=221.2
Q ss_pred HHHHHHHHHhh-cCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC-hHHHHHHHHHHHhC---CCCCHHHHHHHHH
Q 010830 81 PDLVHEVLQLS-YDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGR-FEQMWNAVRVMKED---GVLSLPTFASIFD 155 (499)
Q Consensus 81 ~~~~~~~l~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~---~~~~~~~~~~li~ 155 (499)
...+...+... .++.+.+..+|+.... ..|+...|...++...+.+. .+....+|+..... ++.+...|...+.
T Consensus 15 R~vyer~l~~~P~~~~e~~~~iferal~-~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~ 93 (493)
T 2uy1_A 15 SAIMEHARRLYMSKDYRSLESLFGRCLK-KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIE 93 (493)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHST-TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHH
Confidence 44555555522 3789999999998776 44699999999998888763 45677888877764 3567788988888
Q ss_pred HHH----hcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcc------------CCchHHHHHHHHHHhccCC-CCHH
Q 010830 156 SYC----GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ------------ENQTSRALEFLNRVKKIVD-PDGD 218 (499)
Q Consensus 156 ~~~----~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~------------~~~~~~a~~~~~~~~~~~~-~~~~ 218 (499)
.+. ..|+++.+.++|++.+......-...|......-... .+.+..|..+++.+....+ .+..
T Consensus 94 f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~ 173 (493)
T 2uy1_A 94 EEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVK 173 (493)
T ss_dssp HTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHH
T ss_pred HHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHH
Confidence 765 3467889999999998743211122222221111000 0223344555554433211 2344
Q ss_pred HHHHHHHHHHhcC--C-----HHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhh
Q 010830 219 SFAILLEGWEKEG--N-----VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291 (499)
Q Consensus 219 ~~~~ll~~~~~~g--~-----~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 291 (499)
.|...+..-...+ - .+.+..+|++.... .|.+...|...+..+.+.|+.++|.++|++.... |....
T Consensus 174 ~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~---~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~ 247 (493)
T 2uy1_A 174 NAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS---FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMF 247 (493)
T ss_dssp HHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSH
T ss_pred HHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHH
Confidence 5655555432211 1 34567788888764 3546678888888899999999999999998876 44332
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhcCC----------CCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCH
Q 010830 292 FSNALDILVKLNDSTHAVQLWDIMVGIGF----------NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS 361 (499)
Q Consensus 292 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 361 (499)
+.. .|....+.++. ++.+.+.-. .......+|...+..+.+.++.+.|..+|++. .. ...+.
T Consensus 248 l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~ 319 (493)
T 2uy1_A 248 LSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGP 319 (493)
T ss_dssp HHH---HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCH
T ss_pred HHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCCh
Confidence 221 23322222222 222222100 00112355677777777778899999999988 32 11233
Q ss_pred HhHHHHHHHHHh-cCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHH
Q 010830 362 LTYNMIFECLIK-NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 440 (499)
Q Consensus 362 ~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 440 (499)
..|......-.. .++.+.|..+|+..++.. +-+...+...++...+.|+.+.|..+|+.+. .....|...+..
T Consensus 320 ~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~f 393 (493)
T 2uy1_A 320 HVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEY 393 (493)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 344322221122 336899999999988753 2234445566776778899999999999872 256788888887
Q ss_pred HHhCCChHHHHHHHHHHHH
Q 010830 441 LRNLGRLSDVRRFAEEMLN 459 (499)
Q Consensus 441 ~~~~g~~~~a~~~~~~m~~ 459 (499)
-...|+.+.+.++++++.+
T Consensus 394 E~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 394 EFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHSCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 7788999999998888764
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.01 E-value=2.9e-08 Score=85.84 Aligned_cols=182 Identities=7% Similarity=-0.029 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHH----HH
Q 010830 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS---LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV----AV 185 (499)
Q Consensus 113 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~ 185 (499)
...+..+...+.+.|++++|+..|+.+.+..+.+ ...+..+..+|.+.|++++|+..|+++.+. .|+.. .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 4455556666777788888888887777655422 346777777777788888888888777654 23221 22
Q ss_pred HHHHHHHHc------------------cCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcc
Q 010830 186 NSLLSAICR------------------QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF 247 (499)
Q Consensus 186 ~~ll~~~~~------------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 247 (499)
-.+..++.. . |+.++|...|+++.+..+.+...+..... ...+...
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~P~~~~a~~a~~~--------------l~~~~~~- 145 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDP-QQARAAFSDFSKLVRGYPNSQYTTDATKR--------------LVFLKDR- 145 (225)
T ss_dssp HHHHHHHHHHHC--------------CC-HHHHHHHHHHHHHHTTCTTCTTHHHHHHH--------------HHHHHHH-
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCc-HHHHHHHHHHHHHHHHCcCChhHHHHHHH--------------HHHHHHH-
Confidence 222222222 2 55666666666665544333333221110 0000000
Q ss_pred CCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCC----HhhHHHHHHHHHHcCCHhHHHHHHHHHHhcC
Q 010830 248 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT----LKFFSNALDILVKLNDSTHAVQLWDIMVGIG 319 (499)
Q Consensus 248 ~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 319 (499)
.......+...|.+.|++++|+..|+++.+.. |+ ...+..+..++.+.|+.++|.+.++.+...+
T Consensus 146 -----~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 146 -----LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 00112345566667777777777777766543 22 2345666677777777777777777666654
No 96
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.00 E-value=2.2e-07 Score=82.53 Aligned_cols=145 Identities=10% Similarity=0.080 Sum_probs=72.8
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHh
Q 010830 202 ALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281 (499)
Q Consensus 202 a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 281 (499)
|+..|+++.....++..++..+..++...|++++|++++.+.... +-.+.+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~-~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDN-DEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-CCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445555544332344444455666666666666666666665332 2112455566666666666666666666666665
Q ss_pred hCCCCC-----CHhhHHHHHHHHHH--cC--CHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHH
Q 010830 282 GENCFP-----TLKFFSNALDILVK--LN--DSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352 (499)
Q Consensus 282 ~~~~~p-----~~~~~~~li~~~~~--~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 352 (499)
+.. | +..+...+..++.. .| +...|..+|+++.+.. |+..+-..++.++.+.|++++|.+.++.+
T Consensus 164 ~~~--~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~----p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 164 NAI--EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF----PTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHS--CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS----CSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hcC--ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC----CCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 532 3 23344444444221 12 5555555555554432 33222222233455555555555555544
Q ss_pred H
Q 010830 353 V 353 (499)
Q Consensus 353 ~ 353 (499)
.
T Consensus 238 ~ 238 (310)
T 3mv2_B 238 L 238 (310)
T ss_dssp H
T ss_pred H
Confidence 3
No 97
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.00 E-value=3.5e-08 Score=87.49 Aligned_cols=97 Identities=16% Similarity=0.086 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC----HHHHHHHHHHHHccCCchHHHHHHHHHHhccCC---CCHH
Q 010830 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD----VVAVNSLLSAICRQENQTSRALEFLNRVKKIVD---PDGD 218 (499)
Q Consensus 146 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~ 218 (499)
+...+-.+...+.+.|++++|.+.|+.+.+. .|+ ...+..+..++... |++++|...|++..+..+ ....
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~-~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQN-KEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3444455555555555555555555555443 121 23333444444444 555555555554433211 1123
Q ss_pred HHHHHHHHHHh--------cCCHHHHHHHHHHHhH
Q 010830 219 SFAILLEGWEK--------EGNVEEANKTFGEMVE 245 (499)
Q Consensus 219 ~~~~ll~~~~~--------~g~~~~a~~~~~~~~~ 245 (499)
.+..+..++.+ .|++++|...|+++.+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 125 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFID 125 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH
Confidence 34444444444 4445555555544443
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.99 E-value=2.8e-08 Score=84.73 Aligned_cols=124 Identities=8% Similarity=-0.058 Sum_probs=58.2
Q ss_pred HHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcC
Q 010830 188 LLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267 (499)
Q Consensus 188 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~ 267 (499)
+-..+.+. |++++|...|++..+..+.+...+..+...|...|++++|...|++..+. .|++..+|..+...|...
T Consensus 60 lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 60 LALAYKKN-RNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHC-CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHH
Confidence 34444444 55555555555554444445555555666666666666666666665432 555555555555555443
Q ss_pred CC--HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 010830 268 KQ--VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317 (499)
Q Consensus 268 ~~--~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 317 (499)
|+ .+.+...++.... ..|....+.....++...|++++|...|++.++
T Consensus 136 ~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 32 2223333332221 111111222223333444555555555555554
No 99
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.98 E-value=3.3e-08 Score=84.27 Aligned_cols=111 Identities=11% Similarity=0.145 Sum_probs=57.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHH----------------HHHHHhcCCCHHHHHHHHHHHhhC
Q 010830 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYET----------------FLITLIRGKQVDEALKFLRVMKGE 283 (499)
Q Consensus 220 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~----------------li~~~~~~~~~~~a~~~~~~m~~~ 283 (499)
+......+.+.|++++|...|++..+. .|++...|.. +..+|.+.|++++|+..|++..+.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIAL---NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 334455666788888888888887654 5655555554 444455555555555555444443
Q ss_pred CCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHH
Q 010830 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337 (499)
Q Consensus 284 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 337 (499)
. +-+...+..+..++...|++++|...|++.++.. +.+...|..+...|.
T Consensus 84 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 84 A-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE---ADNLAANIFLGNYYY 133 (208)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHH
Confidence 2 1133444444444445555555555555544432 223444444444443
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.98 E-value=7.8e-09 Score=104.88 Aligned_cols=153 Identities=14% Similarity=-0.023 Sum_probs=80.4
Q ss_pred HhCCChHHHHHHHHHHH--------hCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcc
Q 010830 124 GKNGRFEQMWNAVRVMK--------EDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195 (499)
Q Consensus 124 ~~~~~~~~a~~~~~~m~--------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 195 (499)
...|++++|++.|++.. +..+.+...+..+...|...|++++|++.|++..+.. +-+...|..+-.++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 45566666666666665 4444455556666666666666666666666555432 22334444444445555
Q ss_pred CCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHH
Q 010830 196 ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK 275 (499)
Q Consensus 196 ~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~ 275 (499)
|++++|...|++..+..+.+...|..+...|.+.|++++ .+.|++..+. .|++...|..+..++.+.|++++|++
T Consensus 481 -g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 -GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp -TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555555544434444555555555555555555 5555555332 44444455555555555555555555
Q ss_pred HHHHHhh
Q 010830 276 FLRVMKG 282 (499)
Q Consensus 276 ~~~~m~~ 282 (499)
.|++..+
T Consensus 556 ~~~~al~ 562 (681)
T 2pzi_A 556 TLDEVPP 562 (681)
T ss_dssp HHHTSCT
T ss_pred HHHhhcc
Confidence 5554443
No 101
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.96 E-value=8.1e-08 Score=85.28 Aligned_cols=179 Identities=11% Similarity=0.073 Sum_probs=87.8
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CcCHHHHHHHHHHHHccCCchHHHHHHHHHHh
Q 010830 132 MWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGV-EQDVVAVNSLLSAICRQENQTSRALEFLNRVK 210 (499)
Q Consensus 132 a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~ 210 (499)
|+..|++....+.++..++..+..++...|++++|++++......|- .-+...+..++..+.+. |+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~-~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLN-NNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHH
Confidence 45555555544444444445555556666666666666665544331 12344455555555555 66666666666554
Q ss_pred ccCCC-----CHHHHHHHHHHHH--hcC--CHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHh
Q 010830 211 KIVDP-----DGDSFAILLEGWE--KEG--NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281 (499)
Q Consensus 211 ~~~~~-----~~~~~~~ll~~~~--~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 281 (499)
+. .| +..+...++.+++ ..| ++.+|..+|+++.+. .| +..+-..++.++.+.|++++|.+.++.+.
T Consensus 164 ~~-~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p-~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA-IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FP-TWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH-SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SC-SHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc-CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CC-CcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 42 22 2333334443322 122 566666666666443 23 21122233335666666666666665544
Q ss_pred hC-----CC----CCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 010830 282 GE-----NC----FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI 318 (499)
Q Consensus 282 ~~-----~~----~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 318 (499)
+. .. +-+..++..+|......|+ .|.+++.++.+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 32 00 1234444445544555554 556666666654
No 102
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.96 E-value=3.8e-08 Score=88.55 Aligned_cols=167 Identities=11% Similarity=0.017 Sum_probs=124.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHH
Q 010830 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293 (499)
Q Consensus 214 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 293 (499)
+.+...+..+...+.+.|++++|...|++..+. .|++...+..+...+.+.|++++|...+++..... |+.....
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~ 188 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL---SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQG 188 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHH
Confidence 455666777888888889999999999888654 77788888888889999999999998888776543 4443322
Q ss_pred H-HHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC-CCHHhHHHHHHHH
Q 010830 294 N-ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAF-PDSLTYNMIFECL 371 (499)
Q Consensus 294 ~-li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~ 371 (499)
. ....+...++.+.|...+++..+.. +.+...+..+...|...|++++|+..|.++.+.... .+...+..+...+
T Consensus 189 ~~~~~~l~~~~~~~~a~~~l~~al~~~---P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~ 265 (287)
T 3qou_A 189 LVAQIELLXQAADTPEIQQLQQQVAEN---PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEIL 265 (287)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCccHHHHHHHHhcC---CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence 2 2233556677778888888888764 557788888888888888888888888888874322 1255678888888
Q ss_pred HhcCCHhHHHHHHHHHH
Q 010830 372 IKNKRVHEVEKFFHEMI 388 (499)
Q Consensus 372 ~~~g~~~~a~~~~~~~~ 388 (499)
...|+.++|...+++.+
T Consensus 266 ~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 266 AALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHCTTCHHHHHHHHHH
T ss_pred HHcCCCCcHHHHHHHHH
Confidence 88888888888777654
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.96 E-value=4e-09 Score=87.33 Aligned_cols=157 Identities=15% Similarity=0.059 Sum_probs=78.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHH-HHc
Q 010830 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA-ICR 194 (499)
Q Consensus 116 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~ 194 (499)
+..+...+.+.|++++|...|++..+..+.+...+..+...+...|++++|...|+...+. .|+...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 4445566677777777777777776666666677777777777777777777777766543 2333222211111 111
Q ss_pred cCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCc--hHHhHHHHHHHHhcCCCHHH
Q 010830 195 QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE--HVLAYETFLITLIRGKQVDE 272 (499)
Q Consensus 195 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~~li~~~~~~~~~~~ 272 (499)
. +....|...+++..+..+.+...+..+...+...|++++|...|+++.+. .|+ +...+..+...+...|+.++
T Consensus 87 ~-~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 87 Q-AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKV---NLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp H-HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred h-cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---CcccChHHHHHHHHHHHHHhCCCCc
Confidence 1 11122344444433333334444444444444444444444444444332 221 12234444444444444444
Q ss_pred HHHHHH
Q 010830 273 ALKFLR 278 (499)
Q Consensus 273 a~~~~~ 278 (499)
|...|+
T Consensus 163 A~~~y~ 168 (176)
T 2r5s_A 163 IASKYR 168 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.95 E-value=1.8e-08 Score=83.37 Aligned_cols=163 Identities=8% Similarity=0.010 Sum_probs=109.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 010830 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDI 298 (499)
Q Consensus 219 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 298 (499)
.+..+...+.+.|++++|...|++..+. .|++...+..+...+.+.|++++|+..+++..... |+...+......
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~ 82 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDE---LQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKL 82 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHH---HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHH
Confidence 3455667777888888888888887543 67777788888888888888888888888766543 333322221111
Q ss_pred -HHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCC
Q 010830 299 -LVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFP-DSLTYNMIFECLIKNKR 376 (499)
Q Consensus 299 -~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~ 376 (499)
+...+....|...+++..+.. +.+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~---P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 159 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAAN---PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQ 159 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCS
T ss_pred HHHhhcccchHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCC
Confidence 112223334677777777653 3457777777788888888888888888777643322 24567777777777788
Q ss_pred HhHHHHHHHHHHH
Q 010830 377 VHEVEKFFHEMIK 389 (499)
Q Consensus 377 ~~~a~~~~~~~~~ 389 (499)
.++|...|++.+.
T Consensus 160 ~~~A~~~y~~al~ 172 (176)
T 2r5s_A 160 GNAIASKYRRQLY 172 (176)
T ss_dssp SCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 8877777776543
No 105
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.94 E-value=1.8e-07 Score=79.88 Aligned_cols=175 Identities=7% Similarity=-0.072 Sum_probs=86.1
Q ss_pred HHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCC----ChHHHHHH
Q 010830 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND----DVDNVFRF 348 (499)
Q Consensus 273 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~~ 348 (499)
|++.|++..+.| +...+..+-..|...++.++|...|++..+.| +...+..|...|.. + ++++|++.
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-----~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-----DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 344444444433 33444444445555555555555555555544 34444455555544 3 55555555
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCC-CChhhHHHHHHHHhc----cCChhHHHHHH
Q 010830 349 FDQMVFHGAFPDSLTYNMIFECLIK----NKRVHEVEKFFHEMIKNEWQ-PTPLNCATAITMLLD----ADEPEIAIEIW 419 (499)
Q Consensus 349 ~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~-p~~~~~~~li~~~~~----~g~~~~a~~~~ 419 (499)
|++..+.| +...+..+...|.. .+++++|...|++..+.+.. .+...+..|...|.. .+++++|.++|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 55555432 33444444444444 45555666666555554411 013444455555544 45566666666
Q ss_pred HHHHHCCCCChHHHHHHHHHHHHhC-C-----ChHHHHHHHHHHHHcC
Q 010830 420 NYILENGILPLEASANELLVGLRNL-G-----RLSDVRRFAEEMLNRR 461 (499)
Q Consensus 420 ~~m~~~~~~p~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~m~~~~ 461 (499)
++..+.+ .+...+..|-..|... | ++++|..++++..+.|
T Consensus 153 ~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 153 KGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 6655541 1222344444444432 2 5666666666665555
No 106
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.93 E-value=4.1e-09 Score=84.64 Aligned_cols=141 Identities=16% Similarity=-0.006 Sum_probs=72.1
Q ss_pred HHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHH
Q 010830 123 LGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRA 202 (499)
Q Consensus 123 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a 202 (499)
+...|++++|+..+.......+.+...+..+...|.+.|++++|++.|++..+.. +-+..+|..+-..+... |++++|
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~-~~~~~A 84 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELE-ENTDKA 84 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHH
T ss_pred HHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc-CchHHH
Confidence 3344555555555555544433333344455555555555555555555554432 22344455555555555 555555
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHhHccCCCCchHHhHHHHHHHHhcCC
Q 010830 203 LEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKT-FGEMVERFEWNPEHVLAYETFLITLIRGK 268 (499)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~-~~~~~~~~~~~p~~~~~~~~li~~~~~~~ 268 (499)
...|++..+..+.+..++..+...|.+.|++++|.+. +++..+ +.|++..+|......+...|
T Consensus 85 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~---l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 85 VECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK---LFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH---HSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHhC
Confidence 5555555444444555566666666666665554433 344433 25555555555555544444
No 107
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.93 E-value=1.7e-06 Score=77.60 Aligned_cols=170 Identities=7% Similarity=-0.034 Sum_probs=84.0
Q ss_pred chhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC--ChHHHHHHHHHHHhCCCCCHHHHHHHHHHH----Hhc---CChhH
Q 010830 95 PSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNG--RFEQMWNAVRVMKEDGVLSLPTFASIFDSY----CGA---GKYDE 165 (499)
Q Consensus 95 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~li~~~----~~~---g~~~~ 165 (499)
.++|++.++.+....+-+..+|+.--.++...| +++++++.++.+...++.+..+|+.--..+ ... +++++
T Consensus 49 s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 49 SERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred CHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 345666666665555555566666666666665 666666666666666655555555544444 333 45555
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchH--HHHHHHHHHhccCCCCHHHHHHHHHHHHhcCC------HHHHH
Q 010830 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS--RALEFLNRVKKIVDPDGDSFAILLEGWEKEGN------VEEAN 237 (499)
Q Consensus 166 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~------~~~a~ 237 (499)
++++++.+.+.. +-+-.+|+.-.-.+.+. |.++ +++++++++.+..+.|...|+.......+.|. +++++
T Consensus 129 EL~~~~~~l~~~-pkny~aW~~R~~vl~~l-~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl 206 (306)
T 3dra_A 129 EFDILEAMLSSD-PKNHHVWSYRKWLVDTF-DLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEEL 206 (306)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHh-cccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 555555554432 23344444443333333 4444 44444444444444444444444444444333 44444
Q ss_pred HHHHHHhHccCCCCchHHhHHHHHHHHhcCCC
Q 010830 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269 (499)
Q Consensus 238 ~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~ 269 (499)
+.+++.... .|.|...|+.+-..+.+.|+
T Consensus 207 ~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 207 NYVKDKIVK---CPQNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp HHHHHHHHH---CSSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHh---CCCCccHHHHHHHHHHhcCC
Confidence 444444332 44444444444444444443
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.92 E-value=2.8e-08 Score=98.91 Aligned_cols=153 Identities=14% Similarity=-0.019 Sum_probs=121.8
Q ss_pred cCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 010830 92 YDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171 (499)
Q Consensus 92 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 171 (499)
.|+.++|.+.|+.+.+..+.+...|..+...+.+.|++++|.+.|++..+.++.+..+|..+...|...|++++|.+.|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 36778899999988777777899999999999999999999999999999988889999999999999999999999999
Q ss_pred HHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHhHc
Q 010830 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE---GNVEEANKTFGEMVER 246 (499)
Q Consensus 172 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 246 (499)
+..+.. +.+...+..+...+... |++++|.+.+++..+..+.+...+..+...+... |+.++|.+.+++..+.
T Consensus 82 ~al~~~-p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 82 QASDAA-PEHPGIALWLGHALEDA-GQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 998763 44577888888888888 9999999999998876677888999999999999 9999999999999765
No 109
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.92 E-value=9e-07 Score=79.36 Aligned_cols=228 Identities=8% Similarity=0.050 Sum_probs=164.7
Q ss_pred HHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCcCHHHHHHHHHHH----HccC
Q 010830 123 LGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAG--KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI----CRQE 196 (499)
Q Consensus 123 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~----~~~~ 196 (499)
..+....++|+++++.+...++....+|+.--..+...| +++++++.++.+.... +-+..+|+.--..+ ...+
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 43 MKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcc
Confidence 334455568888888888888888888888888888888 8888888888887653 33444555433333 2221
Q ss_pred --CchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCC---
Q 010830 197 --NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE--EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ--- 269 (499)
Q Consensus 197 --~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~--- 269 (499)
+++++++.+++++.+..+.+..+|+.-.-.+.+.|.++ ++++.++++.+. .|.|...|+.....+.+.+.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~---d~~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT---DLKNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHSSGGGCC
T ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccch
Confidence 57888888888887777788888888777777788877 888888888664 66677788877777777776
Q ss_pred ---HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCH-hHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHH
Q 010830 270 ---VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS-THAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV 345 (499)
Q Consensus 270 ---~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 345 (499)
++++++.++++.... +-|...|+-.-..+.+.|+. +.+..+..++.+.+..-+.+...+..+...|.+.|+.++|
T Consensus 199 ~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 888888888877765 34677777777777777764 3355566655543200145778888888888888888888
Q ss_pred HHHHHHHHHC
Q 010830 346 FRFFDQMVFH 355 (499)
Q Consensus 346 ~~~~~~m~~~ 355 (499)
.++++.+.+.
T Consensus 278 ~~~~~~l~~~ 287 (306)
T 3dra_A 278 RTVYDLLKSK 287 (306)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 8888888763
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.90 E-value=3.4e-08 Score=98.30 Aligned_cols=154 Identities=14% Similarity=0.059 Sum_probs=120.7
Q ss_pred CCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHH
Q 010830 126 NGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205 (499)
Q Consensus 126 ~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~ 205 (499)
.|++++|.+.|++..+..+.+...|..+...|...|++++|.+.|++..+.. +.+...+..+...+... |++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~-g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQ-QRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHT-TCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC-CCHHHHHHH
Confidence 4789999999999998888889999999999999999999999999998764 34577888888888888 999999999
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcC---CCHHHHHHHHHHHhh
Q 010830 206 LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG---KQVDEALKFLRVMKG 282 (499)
Q Consensus 206 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~ 282 (499)
+++..+..+.+...+..+...|.+.|++++|.+.|++..+. .|++...+..+...+... |+.++|.+.+++..+
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 99988766778899999999999999999999999999764 677888999999999999 999999999999877
Q ss_pred CC
Q 010830 283 EN 284 (499)
Q Consensus 283 ~~ 284 (499)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 54
No 111
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.90 E-value=1.5e-07 Score=81.35 Aligned_cols=58 Identities=12% Similarity=0.018 Sum_probs=37.7
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCCCC----hhhHHHHHHHHhccCChhHHHHHHHHHHHC
Q 010830 366 MIFECLIKNKRVHEVEKFFHEMIKNEWQPT----PLNCATAITMLLDADEPEIAIEIWNYILEN 425 (499)
Q Consensus 366 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 425 (499)
.+...|.+.|++++|...|+.+++.. |+ ...+..+..++.+.|+.++|.+.++.+...
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 34456667777777777777776642 22 134666677777777777777777766654
No 112
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.89 E-value=2e-08 Score=80.60 Aligned_cols=137 Identities=9% Similarity=-0.017 Sum_probs=76.5
Q ss_pred CchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHH
Q 010830 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276 (499)
Q Consensus 197 ~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~ 276 (499)
|++++|+..++......+.+...+..+...|.+.|++++|.+.|++..+. .|++..+|..+..+|.+.|++++|+..
T Consensus 11 ~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~~~~A~~~ 87 (150)
T 4ga2_A 11 ADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEENTDKAVEC 87 (150)
T ss_dssp HHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCchHHHHHH
Confidence 55666666665554433334445555666666666666666666666443 565666666666666666666666666
Q ss_pred HHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHH-HHHHHhcCCCCCCCHhHHHHHHHHHHcCC
Q 010830 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL-WDIMVGIGFNLMPNLIMYNAVIGLLCNND 340 (499)
Q Consensus 277 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 340 (499)
|++..+.. +-+...+..+...|.+.|+.++|.+. +++..+.. +-+..+|......+...|
T Consensus 88 ~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~---P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 88 YRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF---PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS---TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC---cCCHHHHHHHHHHHHHhC
Confidence 66655543 12345555566666666665544433 35555532 234455555444444444
No 113
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.87 E-value=3.4e-05 Score=74.64 Aligned_cols=345 Identities=8% Similarity=-0.017 Sum_probs=213.1
Q ss_pred CChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHhC-CCC-cCHHHHHHHHHHHHc----cCCch
Q 010830 127 GRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK-YDEAVMSFDVMSMH-GVE-QDVVAVNSLLSAICR----QENQT 199 (499)
Q Consensus 127 ~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~-g~~-p~~~~~~~ll~~~~~----~~~~~ 199 (499)
|+++.+..+|++.... .|+...|...+....+.+. .+....+|+..... |.. .+...|...+..+.. . ++.
T Consensus 28 ~~~e~~~~iferal~~-~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~-~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK-SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQ-TRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT-CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHH-HHH
T ss_pred CCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhh-HHH
Confidence 8899999999999985 5699999999998888773 46778888887654 543 366777777766542 3 678
Q ss_pred HHHHHHHHHHhccCCCCH-HHHHHHHHHHH-------------hcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHh
Q 010830 200 SRALEFLNRVKKIVDPDG-DSFAILLEGWE-------------KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265 (499)
Q Consensus 200 ~~a~~~~~~~~~~~~~~~-~~~~~ll~~~~-------------~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~ 265 (499)
+.+..+|++.......+. ..|......-. ..+.+..|..+++.+.... ...+...|...+.--.
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~--~~~s~~~W~~y~~~E~ 183 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLI--RGWSVKNAARLIDLEM 183 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHH--hhccHHHHHHHHHHHh
Confidence 889999999876211111 12222111100 1122334444444443210 0012335655555443
Q ss_pred cCC--C-----HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHc
Q 010830 266 RGK--Q-----VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN 338 (499)
Q Consensus 266 ~~~--~-----~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 338 (499)
..+ - .+.+..+|+++.... +.+...|...+..+...|+.+.|..++++.... +.+...|.. |..
T Consensus 184 ~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~----P~~~~l~~~----y~~ 254 (493)
T 2uy1_A 184 ENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM----SDGMFLSLY----YGL 254 (493)
T ss_dssp TCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCSSHHHHH----HHH
T ss_pred cCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCcHHHHHH----HHh
Confidence 321 1 355778888887743 445778888888888999999999999999874 122223322 222
Q ss_pred CCChHHHHHHHHHHHHCC---------CCC---CHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 010830 339 NDDVDNVFRFFDQMVFHG---------AFP---DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406 (499)
Q Consensus 339 ~~~~~~a~~~~~~m~~~g---------~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 406 (499)
..+.++. ++.+.+.- ..+ ....|...+....+.++.+.|..+|+.+ +.. ..+...|......-
T Consensus 255 ~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE 329 (493)
T 2uy1_A 255 VMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIE 329 (493)
T ss_dssp HTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHH
T ss_pred hcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHH
Confidence 2122222 22222210 001 1245666666677788899999999999 321 22334443322222
Q ss_pred hcc-CChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc--h
Q 010830 407 LDA-DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS--M 483 (499)
Q Consensus 407 ~~~-g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~--a 483 (499)
... ++.+.|..+|+...+.. .-+...+...++...+.|+.+.|..+|+.+. -....|...++-=...|+. +
T Consensus 330 ~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~ 403 (493)
T 2uy1_A 330 YYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELF 403 (493)
T ss_dssp HHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHH
Confidence 222 36999999999988743 2234556667787888999999999999873 2467777777766777877 7
Q ss_pred HHHHHHHHHHHh
Q 010830 484 RDIFDSLERRCK 495 (499)
Q Consensus 484 ~~~~~~~~~~~~ 495 (499)
.+++++..+..+
T Consensus 404 r~v~~~~~~~~~ 415 (493)
T 2uy1_A 404 RELVDQKMDAIK 415 (493)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 777888877665
No 114
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.86 E-value=1e-06 Score=79.45 Aligned_cols=215 Identities=10% Similarity=0.026 Sum_probs=125.2
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccC
Q 010830 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFE 248 (499)
Q Consensus 169 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 248 (499)
.+..+......|+..+...+...+.-. .+ .++..-..........+...+..+...|++++|.+++++..+...
T Consensus 33 ~~s~~e~g~~~~~~~~l~~i~~~l~~~---~~---~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~ 106 (293)
T 3u3w_A 33 EVSRIESGAVYPSMDILQGIAAKLQIP---II---HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEE 106 (293)
T ss_dssp HHHHHHTTSCCCCHHHHHHHHHHHTCC---TH---HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhCcC---HH---HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcccc
Confidence 344444444467766666666655432 11 111111100001122233346677888889999888888866422
Q ss_pred CCCch---HHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCC-CC----HhhHHHHHHHHHHcCCHhHHHHHHHHHHhcC-
Q 010830 249 WNPEH---VLAYETFLITLIRGKQVDEALKFLRVMKGENCF-PT----LKFFSNALDILVKLNDSTHAVQLWDIMVGIG- 319 (499)
Q Consensus 249 ~~p~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~- 319 (499)
..|+. ...+..+...+...+++++|+..|++..+.... .+ ..+++.+..+|...|++++|...++++.+.-
T Consensus 107 ~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 186 (293)
T 3u3w_A 107 YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLE 186 (293)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 23311 113334666777778888888888887763222 22 2357777788888888888888888777310
Q ss_pred ---CCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHC----CCCCC-HHhHHHHHHHHHhcC-CHhHHHHHHHHHHH
Q 010830 320 ---FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH----GAFPD-SLTYNMIFECLIKNK-RVHEVEKFFHEMIK 389 (499)
Q Consensus 320 ---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~ 389 (499)
........+|..+...|.+.|++++|...+++..+. +..+. ...|..+..+|.+.| .+++|.+.+++...
T Consensus 187 ~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 187 ALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 001112346777777788888888888777766541 22222 456666777777777 35777777766654
No 115
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.85 E-value=3.4e-07 Score=78.14 Aligned_cols=163 Identities=13% Similarity=0.034 Sum_probs=87.6
Q ss_pred hHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcC----CHhHHHHHHHHHHhcCCCCCCCHhH
Q 010830 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN----DSTHAVQLWDIMVGIGFNLMPNLIM 328 (499)
Q Consensus 253 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~ 328 (499)
++..+..+...|...+++++|+++|++..+.| +...+..+-..|.. + +.++|.++|++..+.| +...
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g-----~~~a 87 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG-----SKSG 87 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT-----CHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC-----CHHH
Confidence 33445555555555555555555555555443 33344444444444 3 5556666666555544 4555
Q ss_pred HHHHHHHHHc----CCChHHHHHHHHHHHHCCCC-CCHHhHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCCCChhhH
Q 010830 329 YNAVIGLLCN----NDDVDNVFRFFDQMVFHGAF-PDSLTYNMIFECLIK----NKRVHEVEKFFHEMIKNEWQPTPLNC 399 (499)
Q Consensus 329 ~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~ 399 (499)
+..|...|.. .+++++|++.|++..+.|.. -+...+..|...|.. .++.++|...|++..+.+ .+...+
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~ 165 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAE 165 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHH
Confidence 5555555554 55666666666666554321 014455555555655 556666777776666641 233344
Q ss_pred HHHHHHHhcc-C-----ChhHHHHHHHHHHHCC
Q 010830 400 ATAITMLLDA-D-----EPEIAIEIWNYILENG 426 (499)
Q Consensus 400 ~~li~~~~~~-g-----~~~~a~~~~~~m~~~~ 426 (499)
..|...|... | ++++|..+|+...+.|
T Consensus 166 ~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 166 YWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 5555555432 2 6677777777666655
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.84 E-value=9e-08 Score=87.06 Aligned_cols=167 Identities=14% Similarity=0.082 Sum_probs=79.6
Q ss_pred cCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 010830 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKT 239 (499)
Q Consensus 160 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 239 (499)
.|++++|.+++++..+.. +. .+....++++.|...|++. ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~--~~---------~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL--KT---------SFMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH--CC---------CSSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc--cc---------cccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHH
Confidence 456666666666654321 10 0222125666666665543 3456667777777777
Q ss_pred HHHHhHcc---CCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC----CCCCC--HhhHHHHHHHHHHcCCHhHHHH
Q 010830 240 FGEMVERF---EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE----NCFPT--LKFFSNALDILVKLNDSTHAVQ 310 (499)
Q Consensus 240 ~~~~~~~~---~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~~~~~~a~~ 310 (499)
|.+..+-. +-...-..+|+.+...|.+.|++++|+..|++..+. | .+. ..++..+...|.. |++++|+.
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 76654420 100111335555666666666666666666554321 1 111 2234444444444 55555555
Q ss_pred HHHHHHhcCCCCC-C--CHhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 010830 311 LWDIMVGIGFNLM-P--NLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353 (499)
Q Consensus 311 ~~~~~~~~~~~~~-~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 353 (499)
.|++..+...... + ...+++.+...|.+.|++++|+..|++..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555444210000 0 02344444455555555555555555444
No 117
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.82 E-value=1.8e-07 Score=85.12 Aligned_cols=161 Identities=14% Similarity=0.104 Sum_probs=72.2
Q ss_pred HHHhcCCCHHHHHHHHHHHhhC----CCCC-CHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCC-CC--CHhHHHHHH
Q 010830 262 ITLIRGKQVDEALKFLRVMKGE----NCFP-TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL-MP--NLIMYNAVI 333 (499)
Q Consensus 262 ~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~--~~~~~~~li 333 (499)
..|...|++++|...|.+..+. +-.. -..+|+.+..+|.+.|++++|...+++..+..... .+ -..+++.+.
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444556666666655554331 1000 02344555555555566666666655554431000 01 123444555
Q ss_pred HHHHcCCChHHHHHHHHHHHHC----CCCC-CHHhHHHHHHHHHhcCCHhHHHHHHHHHHHC----CCCCC-hhhHHHHH
Q 010830 334 GLLCNNDDVDNVFRFFDQMVFH----GAFP-DSLTYNMIFECLIKNKRVHEVEKFFHEMIKN----EWQPT-PLNCATAI 403 (499)
Q Consensus 334 ~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~~li 403 (499)
..|.. |++++|+..|++..+. |... ...++..+...|.+.|++++|+..|++.++. +..+. ...+..+.
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 55555 5555555555554431 0000 0234444555555555555555555555442 11000 11333334
Q ss_pred HHHhccCChhHHHHHHHHHH
Q 010830 404 TMLLDADEPEIAIEIWNYIL 423 (499)
Q Consensus 404 ~~~~~~g~~~~a~~~~~~m~ 423 (499)
.++...|++++|...|++..
T Consensus 203 ~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHh
Confidence 44444455555555555544
No 118
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.75 E-value=8.3e-06 Score=73.94 Aligned_cols=174 Identities=7% Similarity=-0.013 Sum_probs=137.3
Q ss_pred cCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC-ChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc-C-ChhHHHH
Q 010830 92 YDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNG-RFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGA-G-KYDEAVM 168 (499)
Q Consensus 92 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~-g-~~~~A~~ 168 (499)
....++|+++++.+....+-+..+|+.--.++...| .++++++.++.+...++.+..+|+.-...+.+. + +++++++
T Consensus 67 ~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 445678999999888878888899999988888888 599999999999999999999999988888877 7 8999999
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHccCCchH--------HHHHHHHHHhccCCCCHHHHHHHHHHHHhcCC-------H
Q 010830 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTS--------RALEFLNRVKKIVDPDGDSFAILLEGWEKEGN-------V 233 (499)
Q Consensus 169 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-------~ 233 (499)
+++.+.+.. .-|-.+|+.-.-.+.+. +.++ ++++.++++.+..+.|...|+.....+.+.+. +
T Consensus 147 ~~~k~L~~d-pkNy~AW~~R~wvl~~l-~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~ 224 (349)
T 3q7a_A 147 YIHGSLLPD-PKNYHTWAYLHWLYSHF-STLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSL 224 (349)
T ss_dssp HHHHHTSSC-TTCHHHHHHHHHHHHHH-HHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHh-ccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHH
Confidence 999998764 45667777655555444 4454 78888888877677788888888888877776 6
Q ss_pred HHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCH
Q 010830 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270 (499)
Q Consensus 234 ~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~ 270 (499)
+++++.+++.... .|.|...|+.+-..+.+.|+.
T Consensus 225 ~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 225 QDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCC
Confidence 7788888777554 777888888777776666543
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.73 E-value=3.2e-06 Score=76.14 Aligned_cols=89 Identities=10% Similarity=0.157 Sum_probs=43.6
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-cC----HHHHHHH
Q 010830 120 VDVLGKNGRFEQMWNAVRVMKEDGVLSLP------TFASIFDSYCGAGKYDEAVMSFDVMSMHGVE-QD----VVAVNSL 188 (499)
Q Consensus 120 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~l 188 (499)
+..+...|++++|.++++...+....+.. .+..+...+...|++++|++.|+...+.... .+ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 45556666666666666666554321111 2223444455555666666666655542111 11 1234444
Q ss_pred HHHHHccCCchHHHHHHHHHH
Q 010830 189 LSAICRQENQTSRALEFLNRV 209 (499)
Q Consensus 189 l~~~~~~~~~~~~a~~~~~~~ 209 (499)
...|... |++++|..+|++.
T Consensus 162 g~~y~~~-g~~~~A~~~~~~a 181 (293)
T 3u3w_A 162 ANIYAEN-GYLKKGIDLFEQI 181 (293)
T ss_dssp HHHHHHT-TCHHHHHHHHHHH
T ss_pred HHHHHHc-CCHHHHHHHHHHH
Confidence 4445444 5555555555544
No 120
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.70 E-value=2.2e-05 Score=71.14 Aligned_cols=184 Identities=7% Similarity=0.031 Sum_probs=135.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 010830 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAG-KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194 (499)
Q Consensus 116 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 194 (499)
++.+-....+.+..++|+++++.+...++.+..+|+.--..+...| .++++++.++.+.... +-+..+|+.--..+..
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 3344445556667789999999999999999999999888888888 5999999999998764 4456667766555544
Q ss_pred cCC-chHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHhHccCCCCchHHhHHHHHHHHh
Q 010830 195 QEN-QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE--------EANKTFGEMVERFEWNPEHVLAYETFLITLI 265 (499)
Q Consensus 195 ~~~-~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--------~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~ 265 (499)
..+ +.++++.+++++.+..+.|..+|+.-.-.+.+.|.++ ++++.++++.+. .|.|..+|+.....+.
T Consensus 136 l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~---dp~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV---DGRNNSAWGWRWYLRV 212 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHT
T ss_pred hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHH
Confidence 324 7889999999998877888888887666666666665 888888888665 6778888888888887
Q ss_pred cCCC-------HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCC
Q 010830 266 RGKQ-------VDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 304 (499)
Q Consensus 266 ~~~~-------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 304 (499)
+.++ ++++++.++++.... +-|...|+-+-..+.+.|.
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 7775 567777777666543 2345555554444444443
No 121
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.70 E-value=6.3e-06 Score=74.19 Aligned_cols=128 Identities=9% Similarity=0.076 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CcC--HH
Q 010830 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSL------PTFASIFDSYCGAGKYDEAVMSFDVMSMHGV---EQD--VV 183 (499)
Q Consensus 115 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~ 183 (499)
.+...+..+...|++++|.+.++...+...... ..+..+...+...|++++|++.+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344455556666666666666665555432221 1222334444555555555555555543211 111 22
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHhc---cCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010830 184 AVNSLLSAICRQENQTSRALEFLNRVKK---IVDPD----GDSFAILLEGWEKEGNVEEANKTFGEM 243 (499)
Q Consensus 184 ~~~~ll~~~~~~~~~~~~a~~~~~~~~~---~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~ 243 (499)
+++.+-..|... |++++|...|++..+ ..+.+ ..++..+...|.+.|++++|.+.+++.
T Consensus 157 ~~~~lg~~y~~~-~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~ka 222 (293)
T 2qfc_A 157 IENAIANIYAEN-GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 444444444444 555555555544331 11111 134444444444444444444444443
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.69 E-value=1.2e-06 Score=74.69 Aligned_cols=130 Identities=7% Similarity=-0.048 Sum_probs=84.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHh
Q 010830 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK 229 (499)
Q Consensus 150 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~ 229 (499)
+..+...+...|++++|.+.|++.. .|+...+..+...+... |++++|...|++.....+.+...+..+...|.+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTIL-KNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 3445555666667777776666553 45566666666666666 677777777766655445566667777777777
Q ss_pred cCCHHHHHHHHHHHhHccC-------------CCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 010830 230 EGNVEEANKTFGEMVERFE-------------WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284 (499)
Q Consensus 230 ~g~~~~a~~~~~~~~~~~~-------------~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 284 (499)
.|++++|.+.|++..+... ..|.....+..+..++.+.|++++|.+.|++..+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 7777777777777655311 223334667777777777777777777777776654
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.67 E-value=9e-07 Score=71.89 Aligned_cols=95 Identities=11% Similarity=-0.068 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 010830 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194 (499)
Q Consensus 115 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 194 (499)
.|..+...+...|++++|...|+...+..+.+..++..+...+...|++++|.+.+++..+.. +.+...+..+...+..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 445555556666666666666666665555555556666666666666666666665554432 2233344444444444
Q ss_pred cCCchHHHHHHHHHHhc
Q 010830 195 QENQTSRALEFLNRVKK 211 (499)
Q Consensus 195 ~~~~~~~a~~~~~~~~~ 211 (499)
. |++++|...+++...
T Consensus 94 ~-~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 94 L-GKFRAALRDYETVVK 109 (166)
T ss_dssp T-TCHHHHHHHHHHHHH
T ss_pred h-ccHHHHHHHHHHHHH
Confidence 4 444445444444433
No 124
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.67 E-value=2.8e-06 Score=72.31 Aligned_cols=129 Identities=11% Similarity=-0.021 Sum_probs=88.2
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHH
Q 010830 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGL 335 (499)
Q Consensus 256 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 335 (499)
.+..+...+...|++++|++.|++.. .|+...+..+..++...|++++|...+++..+.. +.+...|..+...
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD---KHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---ccchHHHHHHHHH
Confidence 44556666677777777777776553 4466677777777777777777777777777653 4456677777777
Q ss_pred HHcCCChHHHHHHHHHHHHCCCC--------------C-CHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010830 336 LCNNDDVDNVFRFFDQMVFHGAF--------------P-DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 391 (499)
Q Consensus 336 ~~~~~~~~~a~~~~~~m~~~g~~--------------p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 391 (499)
|...|++++|...|++..+.... | ....+..+..+|...|++++|...|+...+..
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 77777777777777777763211 1 12556667777777788888888887777653
No 125
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.67 E-value=2.3e-06 Score=74.99 Aligned_cols=188 Identities=6% Similarity=-0.134 Sum_probs=106.2
Q ss_pred hCCChHHHHHHHHHHHhCCCCCHHHHHHH-------HHHHHhcCChhHHHHHHHHHHhCCCCcCH---------------
Q 010830 125 KNGRFEQMWNAVRVMKEDGVLSLPTFASI-------FDSYCGAGKYDEAVMSFDVMSMHGVEQDV--------------- 182 (499)
Q Consensus 125 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--------------- 182 (499)
+.++...|.+.|.+..+.++-....|..+ ...+.+.++..+++..+..-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 57888999999999988888888888888 4666666666666665555443 22211
Q ss_pred -------HHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCc-hH
Q 010830 183 -------VAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE-HV 254 (499)
Q Consensus 183 -------~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~ 254 (499)
...-.+...+... |++++|.++|+.+..+.+-+. ....+...+.+.+++++|+..|+..... . .|. ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~-g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~ 171 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQ-GNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAG 171 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHH-TCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHH
Confidence 1122233444445 666666666666554332222 4444555666666666666666544221 0 110 01
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCC--HhhHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 010830 255 LAYETFLITLIRGKQVDEALKFLRVMKGENCFPT--LKFFSNALDILVKLNDSTHAVQLWDIMVGI 318 (499)
Q Consensus 255 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 318 (499)
..+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 2455556666666666666666666553332132 223344445555666666666666666654
No 126
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.67 E-value=3.2e-06 Score=76.12 Aligned_cols=135 Identities=9% Similarity=0.039 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCc---hHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCC---CC--Hh
Q 010830 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE---HVLAYETFLITLIRGKQVDEALKFLRVMKGENCF---PT--LK 290 (499)
Q Consensus 219 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---p~--~~ 290 (499)
.+...+..+...|++++|.+.+.+..+.....+. ....+..+...+...|++++|+..+++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3344555566666666666666655443111110 0112233444455555666666666555432111 11 22
Q ss_pred hHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCC----CHhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 010830 291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP----NLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353 (499)
Q Consensus 291 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 353 (499)
+++.+...|...|++++|...+++..+.....+. ...+++.+...|.+.|++++|+..+++..
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 4444555555555555555555554411000000 11344444455555555555555554443
No 127
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.66 E-value=1e-06 Score=67.40 Aligned_cols=95 Identities=18% Similarity=0.249 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 010830 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI 192 (499)
Q Consensus 113 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 192 (499)
...|..+...+...|++++|.+.|+++.+..+.+..++..+...+...|++++|..+|+++.+.. +.+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 34555555566666666666666666655554455555555555555555555555555554432 22333333344444
Q ss_pred HccCCchHHHHHHHHHH
Q 010830 193 CRQENQTSRALEFLNRV 209 (499)
Q Consensus 193 ~~~~~~~~~a~~~~~~~ 209 (499)
... |++++|...++++
T Consensus 88 ~~~-~~~~~A~~~~~~~ 103 (125)
T 1na0_A 88 YKQ-GDYDEAIEYYQKA 103 (125)
T ss_dssp HHT-TCHHHHHHHHHHH
T ss_pred HHh-cCHHHHHHHHHHH
Confidence 443 4444444444443
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.65 E-value=1e-06 Score=71.57 Aligned_cols=128 Identities=13% Similarity=0.081 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 010830 148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW 227 (499)
Q Consensus 148 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~ 227 (499)
..+..+...+...|++++|...|+...+.. +.+..++..+...+... |++++|...+++..+..+.+...+..+...+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRT-ECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 346666666777777777777777765542 23455555555566665 6666666666666554455566666666666
Q ss_pred HhcCCHHHHHHHHHHHhHccCCCCchHHhHHHH--HHHHhcCCCHHHHHHHHHHH
Q 010830 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETF--LITLIRGKQVDEALKFLRVM 280 (499)
Q Consensus 228 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~l--i~~~~~~~~~~~a~~~~~~m 280 (499)
...|++++|.+.|++..+. .|.+...+..+ +..+.+.|++++|++.+...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 6666666666666666443 34344344222 22245556666666555543
No 129
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.63 E-value=9.1e-07 Score=68.75 Aligned_cols=97 Identities=6% Similarity=-0.016 Sum_probs=50.8
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 010830 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS 190 (499)
Q Consensus 111 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 190 (499)
.+...|..+...+.+.|++++|.+.|++..+..+.+..++..+...|...|++++|.+.+++..+.. +.+...+..+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 3445556666666666666666666666665555555556666666666666666666655554432 122333333333
Q ss_pred HHHccCCchHHHHHHHHHH
Q 010830 191 AICRQENQTSRALEFLNRV 209 (499)
Q Consensus 191 ~~~~~~~~~~~a~~~~~~~ 209 (499)
.+... |++++|...|++.
T Consensus 93 ~~~~~-~~~~~A~~~~~~~ 110 (133)
T 2lni_A 93 ALEAM-KDYTKAMDVYQKA 110 (133)
T ss_dssp HHHHT-TCHHHHHHHHHHH
T ss_pred HHHHH-hhHHHHHHHHHHH
Confidence 33333 4444444444443
No 130
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.62 E-value=7.8e-07 Score=70.93 Aligned_cols=103 Identities=10% Similarity=0.085 Sum_probs=52.2
Q ss_pred CCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHh
Q 010830 248 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327 (499)
Q Consensus 248 ~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 327 (499)
.+.|++...+..+...+.+.|++++|+..|++..... +-+...|..+..+|...|++++|...|++..+.. +.+..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~---P~~~~ 105 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG---KNDYT 105 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---SSCCH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC---CCCcH
Confidence 4445455555555555555555555555555554432 1234444445555555555555555555555432 22344
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHH
Q 010830 328 MYNAVIGLLCNNDDVDNVFRFFDQMVF 354 (499)
Q Consensus 328 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 354 (499)
.|..+..+|.+.|++++|...|++..+
T Consensus 106 ~~~~lg~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 106 PVFHTGQCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555555555555555555555544
No 131
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.61 E-value=1.3e-06 Score=67.31 Aligned_cols=106 Identities=10% Similarity=0.121 Sum_probs=48.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHh
Q 010830 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK 229 (499)
Q Consensus 150 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~ 229 (499)
+......|.+.|++++|++.|++..+.. +.+...|..+-.++.+. |++++|+..|++..+..+.+...|..+..+|..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKL-MEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhh-ccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 3333444444444444444444443321 22333333333344444 444444444444433333445555555555556
Q ss_pred cCCHHHHHHHHHHHhHccCCCCchHHhHHHH
Q 010830 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETF 260 (499)
Q Consensus 230 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~l 260 (499)
.|++++|.+.|++..+. .|++...+..+
T Consensus 94 ~~~~~~A~~~~~~al~l---~P~~~~a~~~l 121 (126)
T 4gco_A 94 MREWSKAQRAYEDALQV---DPSNEEAREGV 121 (126)
T ss_dssp TTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH---CcCCHHHHHHH
Confidence 66666666666655432 45444444433
No 132
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.60 E-value=1.6e-06 Score=66.26 Aligned_cols=112 Identities=18% Similarity=0.278 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 010830 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226 (499)
Q Consensus 147 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~ 226 (499)
...|..+...+...|++++|.++|+++.+.. +.+..++..+...+... |++++|..+++++.+..+.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 3456666666777777777777777665542 23445555555556655 666666666666555444455566666666
Q ss_pred HHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHH
Q 010830 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT 263 (499)
Q Consensus 227 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~ 263 (499)
|.+.|++++|.+.|+++.+. .|++...+..+...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~ 120 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL---DPNNAEAKQNLGNA 120 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh---CCCcHHHHHHHHHH
Confidence 66666666666666666443 34344444444333
No 133
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.58 E-value=1.7e-06 Score=66.78 Aligned_cols=110 Identities=5% Similarity=-0.061 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 010830 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI 192 (499)
Q Consensus 113 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 192 (499)
...|......|.+.|++++|++.|++..+.++.+..+|..+..+|.+.|++++|++.|++..+.. +.+...|..+-.++
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 35666777888888999999999988888888888888888888889999999999888887653 44567777888888
Q ss_pred HccCCchHHHHHHHHHHhccCCCCHHHHHHHH
Q 010830 193 CRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224 (499)
Q Consensus 193 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll 224 (499)
... |++++|...|++..+..+.+...+..+.
T Consensus 92 ~~~-~~~~~A~~~~~~al~l~P~~~~a~~~l~ 122 (126)
T 4gco_A 92 VAM-REWSKAQRAYEDALQVDPSNEEAREGVR 122 (126)
T ss_dssp HHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHC-CCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence 888 8899999888887765555655555443
No 134
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.58 E-value=1.5e-06 Score=67.17 Aligned_cols=62 Identities=16% Similarity=0.026 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010830 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175 (499)
Q Consensus 114 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 175 (499)
..|..+...+...|++++|.+.|++.....+.+...+..+...+...|++++|.+.++...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 74 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAIC 74 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHh
Confidence 34445555555555555555555555555444455555555555555555555555555443
No 135
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.58 E-value=6.2e-07 Score=80.26 Aligned_cols=92 Identities=13% Similarity=0.023 Sum_probs=37.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHh
Q 010830 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK 229 (499)
Q Consensus 150 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~ 229 (499)
+..+...+.+.|++++|...|+...+.. +.+...|..+...+... |++++|...+++..+..+.+...+..+..+|..
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKM-QQPEQALADCRRALELDGQSVKAHFFLGQCQLE 84 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3334444444444444444444443321 11233333333333333 444444444444333333334444444444444
Q ss_pred cCCHHHHHHHHHHH
Q 010830 230 EGNVEEANKTFGEM 243 (499)
Q Consensus 230 ~g~~~~a~~~~~~~ 243 (499)
.|++++|.+.|++.
T Consensus 85 ~g~~~~A~~~~~~a 98 (281)
T 2c2l_A 85 MESYDEAIANLQRA 98 (281)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 44555554444444
No 136
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.56 E-value=2.2e-06 Score=66.51 Aligned_cols=117 Identities=8% Similarity=0.028 Sum_probs=75.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHH
Q 010830 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225 (499)
Q Consensus 146 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~ 225 (499)
+...|..+...+...|++++|.+.|++..+.. +.+...+..+...+... |++++|...+++..+..+.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKL-LEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 45567777777777777777777777776542 23455666666666666 77777777777766554556666777777
Q ss_pred HHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcC
Q 010830 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267 (499)
Q Consensus 226 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~ 267 (499)
.+.+.|++++|.+.|++..+. .|.+...+..+...+.+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL---DSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CGGGTHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHh
Confidence 777777777777777776543 444444555555554443
No 137
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.54 E-value=6.7e-07 Score=73.77 Aligned_cols=95 Identities=9% Similarity=0.079 Sum_probs=44.0
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHH-HHhcCCH--HHHHHHHHHHhHccCCCCchHHhHHHH
Q 010830 184 AVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG-WEKEGNV--EEANKTFGEMVERFEWNPEHVLAYETF 260 (499)
Q Consensus 184 ~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~-~~~~g~~--~~a~~~~~~~~~~~~~~p~~~~~~~~l 260 (499)
.+..+...+... |++++|...|++..+..+.+...+..+... |...|++ ++|...|++..+. .|++...+..+
T Consensus 46 ~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l 121 (177)
T 2e2e_A 46 QWALLGEYYLWQ-NDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALAL---DSNEITALMLL 121 (177)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh---CCCcHHHHHHH
Confidence 333333333333 444444444444333223334444444444 4445554 5555555555432 34444455555
Q ss_pred HHHHhcCCCHHHHHHHHHHHhh
Q 010830 261 LITLIRGKQVDEALKFLRVMKG 282 (499)
Q Consensus 261 i~~~~~~~~~~~a~~~~~~m~~ 282 (499)
...+...|++++|...|++..+
T Consensus 122 a~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 122 ASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHh
Confidence 5555555555555555555444
No 138
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.54 E-value=1.2e-06 Score=73.86 Aligned_cols=157 Identities=8% Similarity=-0.047 Sum_probs=75.5
Q ss_pred CchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHc---cCCCCchHHhHHHHHHHHhcCCCHHHH
Q 010830 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER---FEWNPEHVLAYETFLITLIRGKQVDEA 273 (499)
Q Consensus 197 ~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~p~~~~~~~~li~~~~~~~~~~~a 273 (499)
|++++|.++++.+.........++..+...|...|++++|...+++..+. .+..+....++..+...+...|++++|
T Consensus 6 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 85 (203)
T 3gw4_A 6 HDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAA 85 (203)
T ss_dssp -CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 55555555433333322233455555666666666666666666555431 112222344555666666666666666
Q ss_pred HHHHHHHhhC----CCCC--CHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCC-CC--CHhHHHHHHHHHHcCCChHH
Q 010830 274 LKFLRVMKGE----NCFP--TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL-MP--NLIMYNAVIGLLCNNDDVDN 344 (499)
Q Consensus 274 ~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~--~~~~~~~li~~~~~~~~~~~ 344 (499)
.+.+++..+. +-.+ ....+..+...+...|++++|...+++..+..... .+ -..++..+...+...|++++
T Consensus 86 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 165 (203)
T 3gw4_A 86 RRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLE 165 (203)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHH
Confidence 6666554431 1011 12234445555555666666666655544211000 00 12233445555555555555
Q ss_pred HHHHHHHHH
Q 010830 345 VFRFFDQMV 353 (499)
Q Consensus 345 a~~~~~~m~ 353 (499)
|.+.+++..
T Consensus 166 A~~~~~~al 174 (203)
T 3gw4_A 166 AQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555444
No 139
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.54 E-value=5.2e-07 Score=79.00 Aligned_cols=190 Identities=9% Similarity=0.003 Sum_probs=143.2
Q ss_pred hcCCchhHHHHHHHhcCCCCCCHHHHHHH-------HHHHHhCCChHHHHHHHHHHHhCCC------CC-----------
Q 010830 91 SYDSPSSAVDFFRWAGRGQRLSPYAWNLM-------VDVLGKNGRFEQMWNAVRVMKEDGV------LS----------- 146 (499)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~~~~~~a~~~~~~m~~~~~------~~----------- 146 (499)
..+++..|.+.|..+.+..+-....|+.+ ...+.+.++..+++..+..-.+..+ .+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 46889999999999988888889999988 5666666666666666665555211 01
Q ss_pred ----HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCC--HHHH
Q 010830 147 ----LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPD--GDSF 220 (499)
Q Consensus 147 ----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~ 220 (499)
...+-.+...+...|++++|.++|+.+... .|+....-.+-..+.+. +++++|+..|+.......|. ...+
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~-~r~~dA~~~l~~a~~~~d~~~~~~a~ 174 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAA-ERWTDVIDQVKSAGKWPDKFLAGAAG 174 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHT-TCHHHHHHHHTTGGGCSCHHHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHc-CCHHHHHHHHHHhhccCCcccHHHHH
Confidence 234566778899999999999999998765 35443444444566677 99999999998654422221 3467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhHccCCCCc-hHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 010830 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPE-HVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284 (499)
Q Consensus 221 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 284 (499)
..+..++...|++++|++.|++.... ...|. ..........++.+.|+.++|...|+++....
T Consensus 175 ~~LG~al~~LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 175 VAHGVAAANLALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 88899999999999999999999752 33254 44567788899999999999999999998865
No 140
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.53 E-value=7.8e-07 Score=75.08 Aligned_cols=63 Identities=10% Similarity=-0.054 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhHc---cCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHh
Q 010830 219 SFAILLEGWEKEGNVEEANKTFGEMVER---FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281 (499)
Q Consensus 219 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 281 (499)
.+..+...+...|++++|.+.+++..+. .+.......++..+...+...|++++|.+.+++..
T Consensus 109 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 109 NAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3444555555555555555555554321 11111123345555666666666666666665544
No 141
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.53 E-value=1.1e-07 Score=87.56 Aligned_cols=122 Identities=14% Similarity=0.116 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC----------------HHHHHHHHHHHHccCCchHHHHHHHHHH
Q 010830 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD----------------VVAVNSLLSAICRQENQTSRALEFLNRV 209 (499)
Q Consensus 146 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~~~~~~~a~~~~~~~ 209 (499)
+...|..+...|.+.|++++|...|++..+.. |+ ...|..+-.++.+. |++++|+..+++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~-g~~~~A~~~~~~a 222 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKL-QAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 34566666777777777777777777665542 22 23444444444444 5555555555554
Q ss_pred hccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHH
Q 010830 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273 (499)
Q Consensus 210 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a 273 (499)
.+..+.+...|..+..+|...|++++|...|++..+. .|++...+..+..++.+.|+.++|
T Consensus 223 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 223 LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL---YPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4433444455555555555555555555555555332 444444555555555555555544
No 142
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.53 E-value=7.5e-07 Score=71.05 Aligned_cols=95 Identities=12% Similarity=0.046 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 010830 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDI 298 (499)
Q Consensus 219 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 298 (499)
.+..+...+.+.|++++|.+.|++..+. .|.+...|..+..+|...|++++|+..|++..+.. +-+...+..+..+
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 3344444444444444444444444322 34444444444444444444444444444444322 1123334444444
Q ss_pred HHHcCCHhHHHHHHHHHHh
Q 010830 299 LVKLNDSTHAVQLWDIMVG 317 (499)
Q Consensus 299 ~~~~~~~~~a~~~~~~~~~ 317 (499)
|.+.|++++|...|+..++
T Consensus 114 ~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 4444444444444444444
No 143
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.52 E-value=4.8e-07 Score=80.97 Aligned_cols=99 Identities=12% Similarity=-0.045 Sum_probs=81.3
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 010830 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS 190 (499)
Q Consensus 111 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 190 (499)
.+...+..+...+.+.|++++|+..|+...+..+.+...|..+...|.+.|++++|.+.++...+.. +.+...+..+..
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3566777888888899999999999998888887788888899999999999999999998887663 345667777777
Q ss_pred HHHccCCchHHHHHHHHHHhc
Q 010830 191 AICRQENQTSRALEFLNRVKK 211 (499)
Q Consensus 191 ~~~~~~~~~~~a~~~~~~~~~ 211 (499)
++... |++++|...|++..+
T Consensus 81 ~~~~~-g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEM-ESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHH
Confidence 88888 899999998887654
No 144
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.51 E-value=2.9e-06 Score=65.50 Aligned_cols=116 Identities=10% Similarity=0.054 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 010830 148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW 227 (499)
Q Consensus 148 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~ 227 (499)
..+..+...+...|++++|.+.|++..+.. +.+...+..+...+... |++++|...+++.....+.+...+..+...|
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKL-GNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHh-hchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 445555666666666666666666655432 22344455555555555 5555555555555443344455555555555
Q ss_pred HhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCC
Q 010830 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268 (499)
Q Consensus 228 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~ 268 (499)
.+.|++++|.+.|++..+. .|++...+..+..++.+.|
T Consensus 91 ~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL---DPDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHhc---CccchHHHHHHHHHHHHHh
Confidence 5555555555555555432 3434444444444444433
No 145
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.50 E-value=7.3e-07 Score=73.57 Aligned_cols=121 Identities=8% Similarity=0.107 Sum_probs=75.7
Q ss_pred HhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHH-HHccCCch--H
Q 010830 124 GKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA-ICRQENQT--S 200 (499)
Q Consensus 124 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~~~~--~ 200 (499)
...|++++|...|+...+..+.+...|..+...|...|++++|...|++..+.. +.+...+..+... +... |++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~-~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQA-SQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHT-TTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc-CCcchH
Confidence 345666666666666666666666667777777777777777777777665542 2244455555555 4455 666 7
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHc
Q 010830 201 RALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246 (499)
Q Consensus 201 ~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 246 (499)
+|...+++.....+.+...+..+...|...|++++|...|++..+.
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 7777777766555556667777777777777777777777777553
No 146
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.50 E-value=7.8e-05 Score=67.24 Aligned_cols=183 Identities=9% Similarity=-0.039 Sum_probs=142.3
Q ss_pred chhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC----------hHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC--C
Q 010830 95 PSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGR----------FEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAG--K 162 (499)
Q Consensus 95 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g--~ 162 (499)
.++|+++++.+....+-+..+|+.--..+...+. +++++..++.+...++.+..+|+.-...+.+.| .
T Consensus 46 s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 46 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp SHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCccc
Confidence 4579999999988888888889887666655544 688999999999999999999999888888888 4
Q ss_pred hhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCc-hHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc-----------
Q 010830 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ-TSRALEFLNRVKKIVDPDGDSFAILLEGWEKE----------- 230 (499)
Q Consensus 163 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~----------- 230 (499)
+++++++++.+.+.. +-|-.+|+.-.-.+... |. ++++++.++.+.+..+.|...|+.....+.+.
T Consensus 126 ~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l-~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~ 203 (331)
T 3dss_A 126 WARELELCARFLEAD-ERNFHCWDYRRFVAAQA-AVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 203 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------C
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh-CcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccc
Confidence 899999999998764 55777887777776776 66 58999999998877778888888877666655
Q ss_pred ---CCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcC-----------CCHHHHHHHHHHHhh
Q 010830 231 ---GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG-----------KQVDEALKFLRVMKG 282 (499)
Q Consensus 231 ---g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~-----------~~~~~a~~~~~~m~~ 282 (499)
+.++++++.+...... .|+|...|+.+-..+.+. +.++++++.++++.+
T Consensus 204 ~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle 266 (331)
T 3dss_A 204 LPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE 266 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh
Confidence 4577888888888654 888888888776666655 235555555555554
No 147
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.50 E-value=1e-06 Score=70.24 Aligned_cols=108 Identities=9% Similarity=-0.018 Sum_probs=66.9
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC
Q 010830 102 FRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD 181 (499)
Q Consensus 102 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 181 (499)
|+.+....+.+...+..+...+.+.|++++|+..|+.....++.+...|..+..+|...|++++|++.|++..+.. +.+
T Consensus 10 ~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~ 88 (148)
T 2vgx_A 10 IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXE 88 (148)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTC
T ss_pred HHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCC
Confidence 3333333344455666666677777777777777777777666666777777777777777777777777665542 223
Q ss_pred HHHHHHHHHHHHccCCchHHHHHHHHHHhc
Q 010830 182 VVAVNSLLSAICRQENQTSRALEFLNRVKK 211 (499)
Q Consensus 182 ~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 211 (499)
...+..+-.++... |++++|...|++..+
T Consensus 89 ~~~~~~lg~~~~~~-g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 89 PRFPFHAAECLLQX-GELAEAESGLFLAQE 117 (148)
T ss_dssp THHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Confidence 44555555555555 666666666665543
No 148
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.48 E-value=1.2e-06 Score=69.78 Aligned_cols=108 Identities=15% Similarity=0.042 Sum_probs=58.5
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCC
Q 010830 136 VRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDP 215 (499)
Q Consensus 136 ~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~ 215 (499)
|+.+.+..+.+...+..+...+...|++++|...|+...... +.+...|..+-.++... |++++|...|++.....+.
T Consensus 10 ~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 10 IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAM-GQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcCCC
Confidence 333333333344455556666666666666666666655442 23444455555555555 6666666666555544444
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 010830 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVE 245 (499)
Q Consensus 216 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 245 (499)
+...+..+..+|...|++++|.+.|++..+
T Consensus 88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 88 EPRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555556666666666666555544
No 149
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.45 E-value=2.3e-07 Score=78.31 Aligned_cols=122 Identities=12% Similarity=0.132 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CcC--------------HHHHHHHHHHHHccCCchHHHHHHHHHHhccC
Q 010830 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGV-EQD--------------VVAVNSLLSAICRQENQTSRALEFLNRVKKIV 213 (499)
Q Consensus 149 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~--------------~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~ 213 (499)
.+..+...+...|++++|.+.|++..+..- .++ ...+..+..++... |++++|+..+++.....
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKN-KDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhC
Confidence 444455555555555555555555544310 000 13344444444444 55555555555544433
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHH
Q 010830 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274 (499)
Q Consensus 214 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~ 274 (499)
+.+...+..+..+|...|++++|.+.|++..+. .|++...+..+..++...++.+++.
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASL---NPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHC--
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555332 4444444555544444444444333
No 150
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.43 E-value=3.8e-06 Score=77.19 Aligned_cols=132 Identities=11% Similarity=-0.003 Sum_probs=115.4
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC---------------HHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 010830 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS---------------LPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176 (499)
Q Consensus 112 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 176 (499)
+...|..+...+.+.|++++|+..|++..+..+.+ ..+|..+..+|.+.|++++|+..|++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46788899999999999999999999999887655 589999999999999999999999999876
Q ss_pred CCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHhH
Q 010830 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA-NKTFGEMVE 245 (499)
Q Consensus 177 g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a-~~~~~~~~~ 245 (499)
. +.+...|..+-.++... |++++|...|++..+..+.+...+..+...+.+.|+.++| .+.|..|..
T Consensus 226 ~-p~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAV-NDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 44678888888899998 9999999999999887777888999999999999999988 456666644
No 151
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.41 E-value=1.2e-05 Score=60.63 Aligned_cols=61 Identities=8% Similarity=-0.042 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010830 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175 (499)
Q Consensus 115 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 175 (499)
.|..+...+...|++++|.+.|+......+.+...+..+...+...|++++|...+++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 66 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD 66 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 4444455555555555555555555554444444555555555555555555555554443
No 152
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.41 E-value=1.9e-06 Score=68.17 Aligned_cols=98 Identities=7% Similarity=-0.031 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 010830 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191 (499)
Q Consensus 112 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 191 (499)
+...+..+...+.+.|++++|...|+.....++.+...|..+..+|.+.|++++|...|+...+.. +.+...+..+-.+
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 445555666677777777777777777777776677777777777777777777777777776553 2344455555555
Q ss_pred HHccCCchHHHHHHHHHHhc
Q 010830 192 ICRQENQTSRALEFLNRVKK 211 (499)
Q Consensus 192 ~~~~~~~~~~a~~~~~~~~~ 211 (499)
+... |++++|...|++..+
T Consensus 96 ~~~~-g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 96 HLQL-GDLDGAESGFYSARA 114 (142)
T ss_dssp HHHT-TCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHH
Confidence 6666 666666666666544
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.38 E-value=7.4e-06 Score=63.02 Aligned_cols=92 Identities=13% Similarity=0.001 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 010830 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194 (499)
Q Consensus 115 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 194 (499)
.|..+...+.+.|++++|+..|++..+..+.+...|..+..+|.+.|++++|++.|++..+.. +.+...|..+-.++..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 444455555555555555555555555555555555555555555555555555555554432 1223333333333333
Q ss_pred cCCchHHHHHHHHH
Q 010830 195 QENQTSRALEFLNR 208 (499)
Q Consensus 195 ~~~~~~~a~~~~~~ 208 (499)
. |++++|...|++
T Consensus 85 ~-~~~~~A~~~~~~ 97 (126)
T 3upv_A 85 V-KEYASALETLDA 97 (126)
T ss_dssp T-TCHHHHHHHHHH
T ss_pred H-hCHHHHHHHHHH
Confidence 3 444444444443
No 154
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.37 E-value=1.6e-05 Score=59.82 Aligned_cols=95 Identities=15% Similarity=0.130 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 010830 148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW 227 (499)
Q Consensus 148 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~ 227 (499)
..+..+...+...|++++|.+.|+...... +.+...+..+...+... |++++|...+++..+..+.+...+..+...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKK-GDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 445556666666666666666666665442 22444555555555555 6666666666555444444455555555555
Q ss_pred HhcCCHHHHHHHHHHHh
Q 010830 228 EKEGNVEEANKTFGEMV 244 (499)
Q Consensus 228 ~~~g~~~~a~~~~~~~~ 244 (499)
...|++++|.+.+++..
T Consensus 83 ~~~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGL 99 (118)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 56666666666555553
No 155
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.36 E-value=1.8e-06 Score=68.23 Aligned_cols=97 Identities=16% Similarity=0.046 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 010830 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226 (499)
Q Consensus 147 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~ 226 (499)
...+..+...+.+.|++++|.+.|+...... +.+...|..+-.++... |++++|...|++.....+.+...+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSL-GLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 3344455555666666666666666655442 22344444444455555 556666655555554444455555555555
Q ss_pred HHhcCCHHHHHHHHHHHhH
Q 010830 227 WEKEGNVEEANKTFGEMVE 245 (499)
Q Consensus 227 ~~~~g~~~~a~~~~~~~~~ 245 (499)
|...|++++|.+.|+...+
T Consensus 96 ~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555543
No 156
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.35 E-value=1.6e-05 Score=61.08 Aligned_cols=96 Identities=10% Similarity=-0.001 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 010830 148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW 227 (499)
Q Consensus 148 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~ 227 (499)
..|..+...+.+.|++++|.+.|++..+.. +.+...|..+..++... |++++|+..+++..+..+.+...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKL-MSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 345566666677777777777777665542 33455555666666666 6666666666666554455566666666666
Q ss_pred HhcCCHHHHHHHHHHHhH
Q 010830 228 EKEGNVEEANKTFGEMVE 245 (499)
Q Consensus 228 ~~~g~~~~a~~~~~~~~~ 245 (499)
...|++++|.+.|++..+
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 666666666666666644
No 157
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.34 E-value=3e-05 Score=73.96 Aligned_cols=198 Identities=7% Similarity=-0.036 Sum_probs=135.8
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCCCCC-----------------HHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCcC
Q 010830 120 VDVLGKNGRFEQMWNAVRVMKEDGVLS-----------------LPTFASIFDSYCGAGKYDEAVMSFDVMSMH-GVEQD 181 (499)
Q Consensus 120 i~~~~~~~~~~~a~~~~~~m~~~~~~~-----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~ 181 (499)
.+.+.+.|++++|++.|..+.+..... ..++..+...|...|++++|.+.+..+... +..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 355677889999999998887765311 124778889999999999999999877542 11122
Q ss_pred ---HHHHHHHHHHHHccCCchHHHHHHHHHHhc-----cCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcc---CC
Q 010830 182 ---VVAVNSLLSAICRQENQTSRALEFLNRVKK-----IVDP-DGDSFAILLEGWEKEGNVEEANKTFGEMVERF---EW 249 (499)
Q Consensus 182 ---~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~-----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~ 249 (499)
.......+..+....|+.+.|..+++.... +..+ -..++..+...|...|++++|..+++++.... +-
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 223344455555555889999998887633 2222 25577888999999999999999988875531 22
Q ss_pred CCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC----CCCCC--HhhHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 010830 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE----NCFPT--LKFFSNALDILVKLNDSTHAVQLWDIMVG 317 (499)
Q Consensus 250 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 317 (499)
.+.....+..++..|...|++++|..++++.... +..+. ...+..+...+...|+++.|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3334567888889999999999999998876531 21111 23455556666777888888887776654
No 158
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.31 E-value=9.1e-06 Score=60.64 Aligned_cols=98 Identities=10% Similarity=-0.011 Sum_probs=46.4
Q ss_pred hHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCC--CHhHHH
Q 010830 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP--NLIMYN 330 (499)
Q Consensus 253 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~ 330 (499)
+...|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|.+.+++..+.. +. +...+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~ 80 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI---EDEYNKDVWA 80 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS---CCTTCHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---cccchHHHHH
Confidence 33344444555555555555555555444322 1123344444444455555555555555544432 22 344455
Q ss_pred HHHHHHHcC-CChHHHHHHHHHHHH
Q 010830 331 AVIGLLCNN-DDVDNVFRFFDQMVF 354 (499)
Q Consensus 331 ~li~~~~~~-~~~~~a~~~~~~m~~ 354 (499)
.+...+.+. |++++|.+.+++...
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 555555555 555555555555444
No 159
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.31 E-value=0.0004 Score=62.63 Aligned_cols=234 Identities=8% Similarity=-0.050 Sum_probs=114.2
Q ss_pred hCCCh-HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 010830 125 KNGRF-EQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK----------YDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC 193 (499)
Q Consensus 125 ~~~~~-~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 193 (499)
+.|.+ ++|+++++.+...++.+..+|+.--..+...++ +++++.+++.+.... +-+..+|+.---.+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHh
Confidence 44444 477888888888877777777755444443332 344555555544332 223344444333333
Q ss_pred ccCC--chHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCH
Q 010830 194 RQEN--QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN-VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270 (499)
Q Consensus 194 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~ 270 (499)
.. + .+++++.+++.+.+..+.|..+|+.-.-.....|. ++++++.++++.+. .|.|..+|+.....+.+.+..
T Consensus 120 ~l-~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~---~p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 120 RL-PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---NFSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HC-SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHHSCC
T ss_pred cc-CcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhhhc
Confidence 33 3 24445555544444444444444444444444444 34444444444332 333444444433333222100
Q ss_pred HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcC-----------
Q 010830 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN----------- 339 (499)
Q Consensus 271 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------- 339 (499)
..+- ..+ . ...+.++++.+.++..+... +-|...|+-+-..+.+.
T Consensus 196 ~~~~-------~~~-~-------------~~~~~~~eEle~~~~ai~~~---P~d~SaW~Y~r~ll~~~~~~~~~~~~~~ 251 (331)
T 3dss_A 196 PDSG-------PQG-R-------------LPENVLLKELELVQNAFFTD---PNDQSAWFYHRWLLGAGSGRCELSVEKS 251 (331)
T ss_dssp C--------------C-------------CCHHHHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHSSSCGGGCCHHHH
T ss_pred cccc-------ccc-c-------------cchHHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHhccCccccchHHH
Confidence 0000 000 0 00033566666666666653 44666666544444444
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHhHHHHHHH-----HHhcCCHhHHHHHHHHHHHC
Q 010830 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC-----LIKNKRVHEVEKFFHEMIKN 390 (499)
Q Consensus 340 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-----~~~~g~~~~a~~~~~~~~~~ 390 (499)
+.++++++.++++.+. .||. .|+.+-.+ ....|..+++...+.++++.
T Consensus 252 ~~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 252 TVLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 3467778888777763 3443 23332222 22356677778888888763
No 160
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.30 E-value=1.2e-05 Score=61.94 Aligned_cols=97 Identities=20% Similarity=0.178 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC--CCCC----Hhh
Q 010830 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN--CFPT----LKF 291 (499)
Q Consensus 218 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~----~~~ 291 (499)
..+..+...+.+.|++++|++.|++..+. .|++...|+.+..+|.+.|++++|++.+++..+.. ...+ ..+
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~---~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL---DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 34556677777777777777777777543 66677777777777777777777777777665421 1111 124
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHh
Q 010830 292 FSNALDILVKLNDSTHAVQLWDIMVG 317 (499)
Q Consensus 292 ~~~li~~~~~~~~~~~a~~~~~~~~~ 317 (499)
|..+..++...|++++|++.|++.++
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44555556666666666666666555
No 161
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=3.3e-05 Score=61.00 Aligned_cols=94 Identities=12% Similarity=0.070 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC----HHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHH
Q 010830 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD----VVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224 (499)
Q Consensus 149 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll 224 (499)
.+..+...+...|++++|.+.|++..+. .|+ ...+..+...+... |++++|...+++..+..+.+...+..+.
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKL-EDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHH-ccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 3444444444444444444444444332 222 23333333344444 4444444444444333333445555555
Q ss_pred HHHHhcCCHHHHHHHHHHHhH
Q 010830 225 EGWEKEGNVEEANKTFGEMVE 245 (499)
Q Consensus 225 ~~~~~~g~~~~a~~~~~~~~~ 245 (499)
..|...|++++|.+.|++..+
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 556666666666666666544
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.28 E-value=1.4e-05 Score=62.34 Aligned_cols=99 Identities=12% Similarity=-0.046 Sum_probs=67.1
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 010830 110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLL 189 (499)
Q Consensus 110 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 189 (499)
+.+...|..+...+...|++++|...|+...+..+.+...|..+...+...|++++|...++...+.. +.+...+..+.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 44566777777777777777777777777777766667777777777777777777777777766543 23455555566
Q ss_pred HHHHccCCchHHHHHHHHHHh
Q 010830 190 SAICRQENQTSRALEFLNRVK 210 (499)
Q Consensus 190 ~~~~~~~~~~~~a~~~~~~~~ 210 (499)
.++... |++++|...|++..
T Consensus 85 ~~~~~~-~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 85 QCQLEM-ESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHHT-TCHHHHHHHHHHHH
T ss_pred HHHHHH-hhHHHHHHHHHHHH
Confidence 666666 66666666666653
No 163
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=3.4e-05 Score=60.93 Aligned_cols=109 Identities=14% Similarity=-0.044 Sum_probs=61.3
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHH
Q 010830 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS---LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS 187 (499)
Q Consensus 111 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 187 (499)
.+...+..+...+...|++++|.+.|++..+..+.+ ...|..+...|...|++++|.+.++...+.. +.+...+..
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 345555556666666666666666666666554433 4556666666666666666666666655442 223445555
Q ss_pred HHHHHHccCCchHHHHHHHHHHhccCCCCHHHHH
Q 010830 188 LLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221 (499)
Q Consensus 188 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 221 (499)
+..++... |++++|...|++.....+.+...+.
T Consensus 105 ~a~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~ 137 (148)
T 2dba_A 105 RSQALEKL-GRLDQAVLDLQRCVSLEPKNKVFQE 137 (148)
T ss_dssp HHHHHHHH-TCHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred HHHHHHHc-CCHHHHHHHHHHHHHcCCCcHHHHH
Confidence 55555555 6666666666665443333333333
No 164
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.24 E-value=1.9e-05 Score=63.99 Aligned_cols=98 Identities=8% Similarity=-0.038 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 010830 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191 (499)
Q Consensus 112 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 191 (499)
+...|..+...+.+.|++++|++.|++..+..+.+...|..+..+|.+.|++++|+..|++..+.. +.+...|..+-.+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 345666666777777777777777777777666666677777777777777777777777666543 2234555555555
Q ss_pred HHccCCchHHHHHHHHHHhc
Q 010830 192 ICRQENQTSRALEFLNRVKK 211 (499)
Q Consensus 192 ~~~~~~~~~~a~~~~~~~~~ 211 (499)
+... |++++|...|++..+
T Consensus 89 ~~~~-g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 89 RFDM-ADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHT-TCHHHHHHHHHHHHH
T ss_pred HHHc-cCHHHHHHHHHHHHH
Confidence 5555 666666666665544
No 165
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.23 E-value=5.6e-05 Score=72.08 Aligned_cols=200 Identities=10% Similarity=0.016 Sum_probs=142.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCcC----------------HHHHHHHHHHHHccCCchHHHHHHHHHHhcc--CCC
Q 010830 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQD----------------VVAVNSLLSAICRQENQTSRALEFLNRVKKI--VDP 215 (499)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~--~~~ 215 (499)
.+.+.+.|++++|++.|..+.+...... ...+..+...|... |++++|.+++..+... ..+
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~-~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTM-GAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHcc
Confidence 4567788999999999999976532111 12467788889999 9999999999887541 112
Q ss_pred CH----HHHHHHHHHHHhcCCHHHHHHHHHHHhHc---cCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC--CC-
Q 010830 216 DG----DSFAILLEGWEKEGNVEEANKTFGEMVER---FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE--NC- 285 (499)
Q Consensus 216 ~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~- 285 (499)
+. .+.+.+-..+...|+.+.|.++++..... .+..+.-..++..+...|...|++++|..++++.... +.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 21 23344444555678999999988876542 2333334567888999999999999999999887642 11
Q ss_pred -CC-CHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCC--CC--CHhHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 010830 286 -FP-TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL--MP--NLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354 (499)
Q Consensus 286 -~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 354 (499)
.+ ...++..++..|...|++++|..+++........+ ++ -...+..+...+...+++++|...|.+..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 24577888999999999999999998876431001 11 135677777888899999999988877754
No 166
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.23 E-value=1.9e-05 Score=66.27 Aligned_cols=129 Identities=13% Similarity=0.006 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCH----------------HHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 010830 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSL----------------PTFASIFDSYCGAGKYDEAVMSFDVMSMH 176 (499)
Q Consensus 113 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 176 (499)
...+..+...+.+.|++++|++.|++..+....+. .+|..+..+|...|++++|+..++...+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34566777888888999999999988887654333 78888888999999999999999988776
Q ss_pred CCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHH
Q 010830 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN-KTFGEM 243 (499)
Q Consensus 177 g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~-~~~~~~ 243 (499)
. +.+...+..+..++... |++++|...|++..+..+.+...+..+...+...++.+++. ..|..+
T Consensus 118 ~-p~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYF-GFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred C-cccHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 44667777788888888 99999999998887766667778888887777777766665 444444
No 167
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.20 E-value=2.9e-05 Score=59.79 Aligned_cols=55 Identities=16% Similarity=0.255 Sum_probs=22.9
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 010830 296 LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353 (499)
Q Consensus 296 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 353 (499)
...+.+.|++++|+..|++.++.. +.+...|+.+..+|.+.|++++|++.+++..
T Consensus 15 G~~~~~~~~~~~A~~~y~~Al~~~---p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 15 GNAAYKQKDFEKAHVHYDKAIELD---PSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 333444444444444444444332 2233444444444444444444444444433
No 168
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.19 E-value=2.1e-05 Score=58.61 Aligned_cols=95 Identities=13% Similarity=0.007 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCC--CHhhHHHHH
Q 010830 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP--TLKFFSNAL 296 (499)
Q Consensus 219 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~li 296 (499)
.+..+...+.+.|++++|...|++..+. .|.+...|..+...+...|++++|++.+++..+.. +. +...+..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL---DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 3334444444444444444444444332 23333444444444444444444444444444332 11 233444444
Q ss_pred HHHHHc-CCHhHHHHHHHHHHh
Q 010830 297 DILVKL-NDSTHAVQLWDIMVG 317 (499)
Q Consensus 297 ~~~~~~-~~~~~a~~~~~~~~~ 317 (499)
.++.+. |++++|.+.++...+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhh
Confidence 444444 444444444444444
No 169
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.18 E-value=3.8e-05 Score=59.79 Aligned_cols=97 Identities=13% Similarity=0.067 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHH
Q 010830 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296 (499)
Q Consensus 217 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li 296 (499)
...+..+...+.+.|++++|...|++..+. .|++...|..+..++...|++++|+..+++..+.. +.+...+..+.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 344444444444444444444444444332 33344444444444444444444444444444322 11233444444
Q ss_pred HHHHHcCCHhHHHHHHHHHHh
Q 010830 297 DILVKLNDSTHAVQLWDIMVG 317 (499)
Q Consensus 297 ~~~~~~~~~~~a~~~~~~~~~ 317 (499)
.++...|++++|...|+...+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 444444555555444444443
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.18 E-value=1.9e-05 Score=60.71 Aligned_cols=25 Identities=12% Similarity=0.248 Sum_probs=10.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHh
Q 010830 257 YETFLITLIRGKQVDEALKFLRVMK 281 (499)
Q Consensus 257 ~~~li~~~~~~~~~~~a~~~~~~m~ 281 (499)
|..+...+.+.|++++|.+.|++..
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~ 106 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSL 106 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3333344444444444444444333
No 171
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.18 E-value=3.4e-05 Score=62.45 Aligned_cols=99 Identities=10% Similarity=0.044 Sum_probs=72.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHH
Q 010830 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225 (499)
Q Consensus 146 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~ 225 (499)
+...|..+...+.+.|++++|++.|++..+.. +-+...|..+..++... |++++|+..|++..+..+.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSAS-GQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34567777778888888888888888876653 33566667777777777 88888888887776655666777777777
Q ss_pred HHHhcCCHHHHHHHHHHHhHc
Q 010830 226 GWEKEGNVEEANKTFGEMVER 246 (499)
Q Consensus 226 ~~~~~g~~~~a~~~~~~~~~~ 246 (499)
+|.+.|++++|.+.|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 888888888888888777554
No 172
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.16 E-value=2e-05 Score=60.60 Aligned_cols=62 Identities=11% Similarity=0.040 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010830 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175 (499)
Q Consensus 114 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 175 (499)
..|..+...+...|++++|...|+...+..+.+...+..+...|...|++++|...++...+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 66 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 45556666666677777777777766666655666666666666666677666666666654
No 173
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.08 E-value=3e-05 Score=62.18 Aligned_cols=133 Identities=13% Similarity=0.060 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC-CC----HHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC-CC----h
Q 010830 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAF-PD----SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ-PT----P 396 (499)
Q Consensus 327 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-p~----~ 396 (499)
.++..+...|...|++++|...+++..+.... .+ ...+..+...+...|++++|...+++..+.... .+ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 34555555566666666666666555432000 01 124555566666666666666666665542100 11 2
Q ss_pred hhHHHHHHHHhccCChhHHHHHHHHHHHC----CCC-ChHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 010830 397 LNCATAITMLLDADEPEIAIEIWNYILEN----GIL-PLEASANELLVGLRNLGRLSDVRRFAEEMLN 459 (499)
Q Consensus 397 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 459 (499)
..+..+...+...|++++|.+.+++..+. +.. .....+..+...+...|++++|.+.+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34555566666677777777766665531 111 1123455566667777777777777776654
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.08 E-value=2.9e-05 Score=59.19 Aligned_cols=91 Identities=13% Similarity=0.053 Sum_probs=43.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHc
Q 010830 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302 (499)
Q Consensus 223 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 302 (499)
+...+.+.|++++|...|++..+. .|++...|..+..++...|++++|+..|++..+.. +-+...+..+..++...
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 344444455555555555554332 44444455555555555555555555555444432 11233444444555555
Q ss_pred CCHhHHHHHHHHHHh
Q 010830 303 NDSTHAVQLWDIMVG 317 (499)
Q Consensus 303 ~~~~~a~~~~~~~~~ 317 (499)
|++++|...+++.++
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555444
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.07 E-value=4.6e-05 Score=58.07 Aligned_cols=88 Identities=13% Similarity=0.037 Sum_probs=39.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCc
Q 010830 119 MVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198 (499)
Q Consensus 119 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 198 (499)
+...+.+.|++++|+..|+...+..+.+...|..+..++...|++++|+..|++..+.. +-+...+..+..++... |+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~-g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE-HN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc-CC
Confidence 33444445555555555555555444444455555555555555555555554444331 11233333333333333 44
Q ss_pred hHHHHHHHHH
Q 010830 199 TSRALEFLNR 208 (499)
Q Consensus 199 ~~~a~~~~~~ 208 (499)
+++|+..+++
T Consensus 101 ~~~A~~~~~~ 110 (121)
T 1hxi_A 101 ANAALASLRA 110 (121)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.07 E-value=9.9e-05 Score=56.68 Aligned_cols=49 Identities=14% Similarity=0.046 Sum_probs=22.7
Q ss_pred CchHHHHHHHHHHhccCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 010830 197 NQTSRALEFLNRVKKIVDPD---GDSFAILLEGWEKEGNVEEANKTFGEMVE 245 (499)
Q Consensus 197 ~~~~~a~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 245 (499)
|++++|...|+++.+..+.+ ...+..+...+.+.|++++|...|+++.+
T Consensus 53 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 53 RNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444444433322222 33444445555555555555555555544
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.06 E-value=3.3e-05 Score=61.89 Aligned_cols=25 Identities=16% Similarity=-0.072 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 010830 219 SFAILLEGWEKEGNVEEANKTFGEM 243 (499)
Q Consensus 219 ~~~~ll~~~~~~g~~~~a~~~~~~~ 243 (499)
++..+...+...|++++|.+.+++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a 115 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKH 115 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3344444455555555555555444
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.06 E-value=0.00014 Score=55.73 Aligned_cols=97 Identities=12% Similarity=0.027 Sum_probs=62.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC----HHHHHHHH
Q 010830 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVLSL---PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD----VVAVNSLL 189 (499)
Q Consensus 117 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll 189 (499)
..+...+...|++++|.+.|+...+..+.+. ..+..+..++...|++++|...|+...+.. |+ ...+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHH
Confidence 3445566677777777777777776654443 466667777777777777777777776542 32 44455566
Q ss_pred HHHHccCCchHHHHHHHHHHhccCCCC
Q 010830 190 SAICRQENQTSRALEFLNRVKKIVDPD 216 (499)
Q Consensus 190 ~~~~~~~~~~~~a~~~~~~~~~~~~~~ 216 (499)
.++... |++++|...|+.+.+..+.+
T Consensus 84 ~~~~~~-g~~~~A~~~~~~~~~~~p~~ 109 (129)
T 2xev_A 84 LSQYGE-GKNTEAQQTLQQVATQYPGS 109 (129)
T ss_dssp HHHHHT-TCHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHCCCC
Confidence 666666 77777777777765543333
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.00 E-value=1.9e-05 Score=76.26 Aligned_cols=119 Identities=13% Similarity=-0.049 Sum_probs=71.7
Q ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchH
Q 010830 121 DVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS 200 (499)
Q Consensus 121 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 200 (499)
..+.+.|++++|++.|++..+..+.+..+|..+..+|.+.|++++|++.+++..+.. +.+...+..+-.++... |+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~-g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL-GKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHH-TCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc-CCHH
Confidence 344556777777777777766666666677777777777777777777777766553 23455566666666666 6677
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 010830 201 RALEFLNRVKKIVDPDGDSFAILLEG--WEKEGNVEEANKTFG 241 (499)
Q Consensus 201 ~a~~~~~~~~~~~~~~~~~~~~ll~~--~~~~g~~~~a~~~~~ 241 (499)
+|++.|++..+..+.+...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77766666655333344444444444 666677777777766
No 180
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.98 E-value=6.9e-05 Score=69.65 Aligned_cols=139 Identities=11% Similarity=0.006 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 010830 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC 193 (499)
Q Consensus 114 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 193 (499)
..|..+...+.+.|++++|++.|++..+... . ....... +...+.. .-+...|..+-.++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~-------~----~~~~~~~-------~~~~~~~-~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVE-------G----SRAAAED-------ADGAKLQ-PVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------H----HHHHSCH-------HHHGGGH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh-------c----CccccCh-------HHHHHHH-HHHHHHHHHHHHHHH
Confidence 3466666677777777777777766654100 0 0000000 0000000 112344555555555
Q ss_pred ccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHH
Q 010830 194 RQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273 (499)
Q Consensus 194 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a 273 (499)
+. |++++|+..+++..+..+.+...|..+..+|...|++++|.+.|++..+. .|++...+..+...+.+.++.+++
T Consensus 285 ~~-g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l---~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 285 KM-SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI---APEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HT-TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hc-cCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 55 66666666666655544455666666666666777777777777666443 555566666666666666666655
Q ss_pred HH
Q 010830 274 LK 275 (499)
Q Consensus 274 ~~ 275 (499)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 181
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.98 E-value=0.0001 Score=70.80 Aligned_cols=95 Identities=16% Similarity=0.128 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHH
Q 010830 183 VAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI 262 (499)
Q Consensus 183 ~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~ 262 (499)
..|..+-.++.+. |++++|+..+++..+..+.+...|..+..+|...|++++|...|++.. .+.|++...+..+..
T Consensus 318 ~~~~nla~~~~~~-g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al---~l~P~~~~a~~~l~~ 393 (457)
T 1kt0_A 318 AAFLNLAMCYLKL-REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL---EVNPQNKAARLQISM 393 (457)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TTC----CHHHHHHH
T ss_pred HHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHH---HhCCCCHHHHHHHHH
Confidence 4455555555555 666666666666555445556666666667777777777777777663 335656666666666
Q ss_pred HHhcCCCHHHHHH-HHHHHh
Q 010830 263 TLIRGKQVDEALK-FLRVMK 281 (499)
Q Consensus 263 ~~~~~~~~~~a~~-~~~~m~ 281 (499)
++.+.++.+++.+ ++..|.
T Consensus 394 ~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 394 CQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 6666666666553 344443
No 182
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.97 E-value=8e-05 Score=71.55 Aligned_cols=146 Identities=10% Similarity=-0.040 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 010830 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226 (499)
Q Consensus 147 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~ 226 (499)
...|..+...|.+.|++++|...|++..+. .|+... . . .+...+ .. ......|..+..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~----------~-~-~~~~~~----~~---~~~~~~~~nla~~ 326 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYG----------L-S-EKESKA----SE---SFLLAAFLNLAMC 326 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCS----------C-C-HHHHHH----HH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hccccc----------C-C-hHHHHH----HH---HHHHHHHHHHHHH
Confidence 445666777777777777777777776543 111100 0 0 000000 00 0124677888888
Q ss_pred HHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHh
Q 010830 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306 (499)
Q Consensus 227 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 306 (499)
|.+.|++++|+..|++..+. .|++...|..+..+|...|++++|+..|++..+.. +-+...+..+..++.+.++.+
T Consensus 327 ~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~ 402 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGL---DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHN 402 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998654 67788889999999999999999999999888754 224567777778888888887
Q ss_pred HHHH-HHHHHHh
Q 010830 307 HAVQ-LWDIMVG 317 (499)
Q Consensus 307 ~a~~-~~~~~~~ 317 (499)
++.+ ++..|..
T Consensus 403 ~a~~~~~~~~f~ 414 (457)
T 1kt0_A 403 ERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHHHh
Confidence 7663 4555543
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.97 E-value=1.8e-05 Score=59.91 Aligned_cols=85 Identities=8% Similarity=-0.025 Sum_probs=68.4
Q ss_pred cCCchhHHHHHHHhcCC---CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 010830 92 YDSPSSAVDFFRWAGRG---QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVM 168 (499)
Q Consensus 92 ~~~~~~a~~~~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 168 (499)
.|++++|+..|+.+.+. .+.+...|..+...|.+.|++++|++.|++..+.++.+..++..+..++...|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 46778888888888764 355677888888899999999999999999988888788888889999999999999999
Q ss_pred HHHHHHhC
Q 010830 169 SFDVMSMH 176 (499)
Q Consensus 169 ~~~~m~~~ 176 (499)
.|++..+.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 98887654
No 184
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.96 E-value=3.3e-05 Score=70.96 Aligned_cols=147 Identities=10% Similarity=-0.074 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 010830 148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW 227 (499)
Q Consensus 148 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~ 227 (499)
..+..+...+.+.|++++|...|++..+. .|+... +... ++.+++...+. ..+|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~-~~~~~~~~~l~---------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLY-GKYQDMALAVK---------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCC-HHHHHHHHHHH---------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhc-ccHHHHHHHHH---------HHHHHHHHHHH
Confidence 34666677777778888888888776643 333221 1122 33333332221 13566677777
Q ss_pred HhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCC-HhhHHHHHHH-HHHcCCH
Q 010830 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT-LKFFSNALDI-LVKLNDS 305 (499)
Q Consensus 228 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~-~~~~~~~ 305 (499)
.+.|++++|...+++..+. .|++...|..+..+|...|++++|+..|++..+.. |+ ...+..+... ....+..
T Consensus 241 ~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--p~~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--PDDKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777543 56666777777777777777777777777766543 32 2333333333 2234556
Q ss_pred hHHHHHHHHHHhc
Q 010830 306 THAVQLWDIMVGI 318 (499)
Q Consensus 306 ~~a~~~~~~~~~~ 318 (499)
+.+..+|..+...
T Consensus 316 ~~a~~~~~~~l~~ 328 (338)
T 2if4_A 316 QKQKEMYKGIFKG 328 (338)
T ss_dssp -------------
T ss_pred HHHHHHHHHhhCC
Confidence 6677777777654
No 185
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.95 E-value=0.00062 Score=67.01 Aligned_cols=175 Identities=9% Similarity=-0.048 Sum_probs=144.7
Q ss_pred CCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC----------hHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC-
Q 010830 93 DSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGR----------FEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAG- 161 (499)
Q Consensus 93 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g- 161 (499)
...++|++.++.+....+-+..+|+.--.++.+.|+ ++++++.++.+.+.++.+..+|+.-...+.+.|
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Confidence 345788999998888788888899988888877777 899999999999999999999999999999999
Q ss_pred -ChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCC-chHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc---------
Q 010830 162 -KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN-QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE--------- 230 (499)
Q Consensus 162 -~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------- 230 (499)
+++++++.++++.+.. .-+..+|+.--..+.+. | .++++++.++++.+..+.|...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l-~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQA-AVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-CCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHc-CCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 7799999999998775 55778888877777777 6 889999999988887778888888877777663
Q ss_pred -----CCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHH
Q 010830 231 -----GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272 (499)
Q Consensus 231 -----g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~ 272 (499)
+.++++.+.+++.... .|++...|+.+-..+.+.++.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~---~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHH---CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhh---CCCCccHHHHHHHHHhcCCCccc
Confidence 5578888888888654 78888899988888888776444
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.95 E-value=9.1e-05 Score=68.84 Aligned_cols=139 Identities=12% Similarity=0.024 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 010830 148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW 227 (499)
Q Consensus 148 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~ 227 (499)
..+..+...+.+.|++++|++.|++..+. .++. ... ... +......+.+..+|..+..+|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~----------~~~-~~~-------~~~~~~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS----------RAA-AED-------ADGAKLQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHH----------HHH-SCH-------HHHGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcC----------ccc-cCh-------HHHHHHHHHHHHHHHHHHHHH
Confidence 34777888899999999999999887642 0100 000 111 111111233567888999999
Q ss_pred HhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhH
Q 010830 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 307 (499)
Q Consensus 228 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 307 (499)
.+.|++++|.+.+++..+ +.|++...|..+..+|...|++++|++.|++..+.. +-+...+..+..++...++.++
T Consensus 284 ~~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALE---IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp HHTTCHHHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999954 478888999999999999999999999999988754 2256677777777888787777
Q ss_pred HHH
Q 010830 308 AVQ 310 (499)
Q Consensus 308 a~~ 310 (499)
+.+
T Consensus 360 a~k 362 (370)
T 1ihg_A 360 KEK 362 (370)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.94 E-value=3.3e-05 Score=58.46 Aligned_cols=84 Identities=13% Similarity=0.027 Sum_probs=38.3
Q ss_pred CChhHHHHHHHHHHhCCC--CcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010830 161 GKYDEAVMSFDVMSMHGV--EQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANK 238 (499)
Q Consensus 161 g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 238 (499)
|++++|+..|++..+.+. +-+...+..+...+... |++++|...|++..+..+.+...+..+..++.+.|++++|..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTL-GEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 445555555555544320 11223334444444444 555555555555444334444555555555555555555555
Q ss_pred HHHHHhH
Q 010830 239 TFGEMVE 245 (499)
Q Consensus 239 ~~~~~~~ 245 (499)
.|++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 188
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.94 E-value=2.2e-05 Score=75.89 Aligned_cols=121 Identities=13% Similarity=0.087 Sum_probs=90.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCC
Q 010830 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232 (499)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 232 (499)
+...+.+.|++++|.+.|++..+.. +.+...|..+..++.+. |++++|+..+++..+..+.+...+..+..+|.+.|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRT-ECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 3445667889999999998887653 33577788888888888 899999999988877666778888888888999999
Q ss_pred HHHHHHHHHHHhHccCCCCchHHhHHHHHHH--HhcCCCHHHHHHHHH
Q 010830 233 VEEANKTFGEMVERFEWNPEHVLAYETFLIT--LIRGKQVDEALKFLR 278 (499)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~--~~~~~~~~~a~~~~~ 278 (499)
+++|.+.|++..+. .|++...+..+..+ +.+.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999888664 55555566666655 777788888888887
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.86 E-value=6.1e-05 Score=69.16 Aligned_cols=149 Identities=9% Similarity=0.053 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 010830 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI 192 (499)
Q Consensus 113 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 192 (499)
...|..+...+.+.|++++|+..|++..+....+. .+...|+.+++...+. ...|..+-.++
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~--------~~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH--------HHTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch--------hhhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 45677888889999999999999999877643221 1223334444333221 12566666777
Q ss_pred HccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHH-HhcCCCHH
Q 010830 193 CRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT-LIRGKQVD 271 (499)
Q Consensus 193 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~-~~~~~~~~ 271 (499)
.+. |++++|+..+++..+..+.+...|..+..+|...|++++|.+.|++.. .+.|++...+..+... ....+..+
T Consensus 241 ~~~-g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al---~l~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 241 IKL-KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQ---KYAPDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HTT-TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT---C------------------------
T ss_pred HHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 777 888888888888766556677888888888888888888888888874 4467666677766666 34456677
Q ss_pred HHHHHHHHHhhC
Q 010830 272 EALKFLRVMKGE 283 (499)
Q Consensus 272 ~a~~~~~~m~~~ 283 (499)
++.++|..|...
T Consensus 317 ~a~~~~~~~l~~ 328 (338)
T 2if4_A 317 KQKEMYKGIFKG 328 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHhhCC
Confidence 777788777654
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.86 E-value=0.00023 Score=57.30 Aligned_cols=64 Identities=20% Similarity=0.181 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC
Q 010830 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283 (499)
Q Consensus 217 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 283 (499)
...|..+..+|.+.|++++|...+++..+. .|.+...|..+..+|...|++++|...|++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~---~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKR---EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 344455555555555555555555555332 4445555555555555555555555555555443
No 191
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.82 E-value=0.00013 Score=58.86 Aligned_cols=29 Identities=14% Similarity=-0.028 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 010830 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKED 142 (499)
Q Consensus 114 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 142 (499)
..+......+.+.|++++|+..|....+.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~ 40 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTR 40 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34555666677777777777777666554
No 192
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.78 E-value=0.00018 Score=69.04 Aligned_cols=99 Identities=15% Similarity=0.060 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHcCCHhHHHHHHHHHHh-----cCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHH-----CCCC-C
Q 010830 291 FFSNALDILVKLNDSTHAVQLWDIMVG-----IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF-----HGAF-P 359 (499)
Q Consensus 291 ~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~-p 359 (499)
+++.+...|...|++++|+.++++.++ .|.+.+-...+++.|...|...|++++|+.++++..+ .|.. |
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp 432 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP 432 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 334444444444444444444443331 1221222344555666666666666666666555442 1211 2
Q ss_pred CH-HhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010830 360 DS-LTYNMIFECLIKNKRVHEVEKFFHEMIK 389 (499)
Q Consensus 360 ~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 389 (499)
++ .+.+.+-.++...+.+++|+.++..+.+
T Consensus 433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2233444555566666666666666655
No 193
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.77 E-value=0.00028 Score=67.77 Aligned_cols=126 Identities=13% Similarity=-0.098 Sum_probs=57.7
Q ss_pred hcCCHHHHHHHHHHHhHc----c-CCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhh-----CC-CCCC-HhhHHHHH
Q 010830 229 KEGNVEEANKTFGEMVER----F-EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG-----EN-CFPT-LKFFSNAL 296 (499)
Q Consensus 229 ~~g~~~~a~~~~~~~~~~----~-~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~-~~p~-~~~~~~li 296 (499)
..|++++|+.++++..+. + .-.|+...+++.|...|...|++++|+.++++..+ .| -.|+ ..+++.|.
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 445555555444443321 1 11233334455555555555555555555544332 11 1111 23444555
Q ss_pred HHHHHcCCHhHHHHHHHHHHh-----cCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 010830 297 DILVKLNDSTHAVQLWDIMVG-----IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354 (499)
Q Consensus 297 ~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 354 (499)
..|...|++++|+.++++.++ .|.+.+....+.+.+-.++...+.+++|..+|..+.+
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555554432 1322222333445555555556666666666666554
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.76 E-value=0.00025 Score=53.18 Aligned_cols=80 Identities=6% Similarity=-0.042 Sum_probs=66.4
Q ss_pred hhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010830 96 SSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175 (499)
Q Consensus 96 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 175 (499)
+.|+..|+.+.+..+.+...|..+...+...|++++|+..|++..+.++.+...|..+..+|...|++++|...|+...+
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35677777777767778888888888888899999999999888888877788888888888888899888888888764
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.73 E-value=4.1e-05 Score=57.00 Aligned_cols=65 Identities=9% Similarity=-0.029 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 010830 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176 (499)
Q Consensus 112 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 176 (499)
+...|..+...+.+.|++++|++.|++..+..+.+...|..+..++.+.|++++|++.|++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 45677778888888888888888888888887777888888888888888888888888888765
No 196
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.72 E-value=0.0023 Score=62.97 Aligned_cols=137 Identities=7% Similarity=-0.099 Sum_probs=82.8
Q ss_pred hCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 010830 125 KNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK----------YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194 (499)
Q Consensus 125 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 194 (499)
.....++|++.++.+...++.+..+|+.--..+...|+ ++++++.++.+.+.. +-+..+|+.---.+.+
T Consensus 41 ~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 41 AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 34455677888888888888777888877666666665 666666666665543 3344555555555555
Q ss_pred cCC--chHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhc
Q 010830 195 QEN--QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG-NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266 (499)
Q Consensus 195 ~~~--~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~ 266 (499)
. + +++++++.++++.+..+.|..+|+.-...+.+.| .++++.+.++++.+ ..|.|..+|+.....+.+
T Consensus 120 l-~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~---~~p~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 120 L-PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT---RNFSNYSSWHYRSCLLPQ 190 (567)
T ss_dssp C-SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT---TTCCCHHHHHHHHHHHHH
T ss_pred c-ccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHH---HCCCCccHHHHHHHHHHh
Confidence 4 5 4466666666665555555666665555555555 55666666555533 355555555555444433
No 197
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.66 E-value=0.00052 Score=54.17 Aligned_cols=64 Identities=16% Similarity=0.025 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhHc----cCCCCchHHhH----HHHHHHHhcCCCHHHHHHHHHHHhh
Q 010830 219 SFAILLEGWEKEGNVEEANKTFGEMVER----FEWNPEHVLAY----ETFLITLIRGKQVDEALKFLRVMKG 282 (499)
Q Consensus 219 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~p~~~~~~----~~li~~~~~~~~~~~a~~~~~~m~~ 282 (499)
.|..+..++.+.|++++|+..+++..+. ..+.|++...| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6667777777777777777777766431 23377777777 7788888888888888888877654
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.64 E-value=0.0016 Score=50.64 Aligned_cols=10 Identities=10% Similarity=0.245 Sum_probs=3.6
Q ss_pred hhHHHHHHHH
Q 010830 412 PEIAIEIWNY 421 (499)
Q Consensus 412 ~~~a~~~~~~ 421 (499)
+++|.++|++
T Consensus 113 ~~~A~~~~~~ 122 (138)
T 1klx_A 113 EKQAVKTFEK 122 (138)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.62 E-value=0.0022 Score=49.91 Aligned_cols=110 Identities=5% Similarity=-0.048 Sum_probs=55.1
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhc----cCChhHHH
Q 010830 341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD----ADEPEIAI 416 (499)
Q Consensus 341 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~ 416 (499)
++++|++.|++..+.|. ++.. +-..|...+.+++|.+.|++..+.| +...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 34455555555554431 1111 3333444444555555555555543 33444444444444 45566666
Q ss_pred HHHHHHHHCCCCChHHHHHHHHHHHHh----CCChHHHHHHHHHHHHcC
Q 010830 417 EIWNYILENGILPLEASANELLVGLRN----LGRLSDVRRFAEEMLNRR 461 (499)
Q Consensus 417 ~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~ 461 (499)
++|++..+.| +...+..|-..|.. .+++++|.+++++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666555544 23444445555555 566666666666666555
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.56 E-value=0.00047 Score=51.66 Aligned_cols=77 Identities=12% Similarity=-0.039 Sum_probs=39.3
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHh
Q 010830 202 ALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281 (499)
Q Consensus 202 a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 281 (499)
|+..|++..+..+.+...+..+...|...|++++|.+.|++..+. .|++...|..+..++...|++++|...|++..
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF---DPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444443333444555555555555555555555555555432 34444455555555555555555555555443
No 201
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.48 E-value=0.0014 Score=51.68 Aligned_cols=61 Identities=18% Similarity=0.164 Sum_probs=41.6
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHhcc-------CCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHhH
Q 010830 184 AVNSLLSAICRQENQTSRALEFLNRVKKI-------VDPDGDSF----AILLEGWEKEGNVEEANKTFGEMVE 245 (499)
Q Consensus 184 ~~~~ll~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~ 245 (499)
.|+.+-.++.+. |++++|+..+++..+. .+.+...| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~L-gr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGL-RSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 455555555555 5666666555554443 44456677 8888889999999999999988855
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.47 E-value=7.4e-05 Score=55.58 Aligned_cols=61 Identities=15% Similarity=0.195 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhh
Q 010830 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282 (499)
Q Consensus 219 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 282 (499)
.+..+...+.+.|++++|.+.|++..+. .|++...|..+..++.+.|++++|++.+++..+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITA---QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3444444444555555555555544332 343444444455555555555555555554443
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.45 E-value=0.0014 Score=46.30 Aligned_cols=79 Identities=19% Similarity=0.229 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 010830 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191 (499)
Q Consensus 112 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 191 (499)
+...|..+...+...|++++|...|++..+..+.+..++..+...+...|++++|.+.|++..+.. +.+...+..+-..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 345677777777888888888888888877776677777778888888888888888887776542 2234444444333
No 204
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.39 E-value=0.00099 Score=48.44 Aligned_cols=66 Identities=11% Similarity=0.057 Sum_probs=56.7
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010830 110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175 (499)
Q Consensus 110 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 175 (499)
+.+...|..+...+.+.|++++|+..|++..+.++.+...|..+..+|...|++++|.+.|++..+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456778888889999999999999999999888887788899999999999999999999988764
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.36 E-value=0.0016 Score=45.93 Aligned_cols=60 Identities=18% Similarity=0.286 Sum_probs=26.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhh
Q 010830 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282 (499)
Q Consensus 220 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 282 (499)
+..+...+.+.|++++|.+.|++..+. .|++...+..+...+.+.|++++|+..+++..+
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 333444444444444444444444332 233334444444444444444444444444433
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.34 E-value=0.00052 Score=54.05 Aligned_cols=97 Identities=11% Similarity=-0.056 Sum_probs=77.2
Q ss_pred CchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCh----------HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC--
Q 010830 94 SPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRF----------EQMWNAVRVMKEDGVLSLPTFASIFDSYCGAG-- 161 (499)
Q Consensus 94 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~----------~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g-- 161 (499)
.+++|++.++.+....+.+...|+.+..++...+++ ++|+..|++..+.++.+..+|..+..+|...|
T Consensus 17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l 96 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFL 96 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhccc
Confidence 456788888877777788889999888888888765 59999999999998888889999999998774
Q ss_pred ---------ChhHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 010830 162 ---------KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI 192 (499)
Q Consensus 162 ---------~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 192 (499)
++++|++.|++..+. .|+...|...+...
T Consensus 97 ~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 97 TPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT 134 (158)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred CcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 788888888888765 67766665555443
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.28 E-value=0.0015 Score=47.45 Aligned_cols=65 Identities=23% Similarity=0.154 Sum_probs=43.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhh
Q 010830 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282 (499)
Q Consensus 215 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 282 (499)
.+...+..+...|.+.|++++|.+.|++..+. .|++...|..+..+|.+.|++++|++.|++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVET---DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34566666777777777777777777777553 555566677777777777777777777766543
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.16 E-value=0.001 Score=52.43 Aligned_cols=95 Identities=16% Similarity=0.057 Sum_probs=54.8
Q ss_pred CchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhc
Q 010830 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN----------VEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266 (499)
Q Consensus 197 ~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~ 266 (499)
+.+++|.+.++...+..+.+...|+.+..++...++ +++|+..|++..+ +.|++..+|..+..+|..
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~---ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH---hCcCcHHHHHHHHHHHHH
Confidence 445555555555544444455555555555555544 3477777777643 366666777777777766
Q ss_pred CC-----------CHHHHHHHHHHHhhCCCCCCHhhHHHHH
Q 010830 267 GK-----------QVDEALKFLRVMKGENCFPTLKFFSNAL 296 (499)
Q Consensus 267 ~~-----------~~~~a~~~~~~m~~~~~~p~~~~~~~li 296 (499)
.| ++++|++.|++..+.. |+...|...+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~--P~~~~y~~al 131 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQ--PDNTHYLKSL 131 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 53 6667777666666543 5544444333
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.90 E-value=0.039 Score=50.03 Aligned_cols=65 Identities=6% Similarity=-0.007 Sum_probs=29.8
Q ss_pred CchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 010830 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317 (499)
Q Consensus 251 p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 317 (499)
|.+..+|..+...+...|++++|...+++....+ |+...|..+-..+.-.|+.++|.+.+++...
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3344444444444444455555555555444433 3443444444444444555555544444444
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.89 E-value=0.025 Score=51.27 Aligned_cols=154 Identities=14% Similarity=0.127 Sum_probs=88.7
Q ss_pred cCCCCHHHHHHHHHHHH--hcC---CHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCC
Q 010830 212 IVDPDGDSFAILLEGWE--KEG---NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286 (499)
Q Consensus 212 ~~~~~~~~~~~ll~~~~--~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 286 (499)
..+.+...|...+++.. ..+ +..+|..+|++..+. .|+....|..+..+|.. +... .+.
T Consensus 189 ~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~----------~~~~--~~~- 252 (372)
T 3ly7_A 189 ILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIV----------RHSQ--HPL- 252 (372)
T ss_dssp HSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH----------HHHH--SCC-
T ss_pred cCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHH----------Hhcc--CCC-
Confidence 34566677777665543 223 356788888888654 77766677666655540 0000 000
Q ss_pred CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHH
Q 010830 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM 366 (499)
Q Consensus 287 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 366 (499)
+...... ...+.+ ....... .+.+..+|..+...+...|++++|...+++....+ |+...|..
T Consensus 253 -~~~~~~~----------l~~a~~---a~~a~~~-~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~l 315 (372)
T 3ly7_A 253 -DEKQLAA----------LNTEID---NIVTLPE-LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVL 315 (372)
T ss_dssp -CHHHHHH----------HHHHHH---HHHTCGG-GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred -chhhHHH----------HHHHHH---HHHhccc-CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHH
Confidence 0000000 011111 1111100 24567777777666666688888888888877753 66666666
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHH
Q 010830 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 400 (499)
Q Consensus 367 ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 400 (499)
+...+.-.|++++|.+.|++.... .|...+|.
T Consensus 316 lG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 316 LGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 677777788888888888777764 36655544
No 211
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.81 E-value=0.015 Score=41.27 Aligned_cols=69 Identities=6% Similarity=-0.031 Sum_probs=59.7
Q ss_pred CCCCHHHHHHHHHHHHhCCC---hHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 010830 109 QRLSPYAWNLMVDVLGKNGR---FEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177 (499)
Q Consensus 109 ~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 177 (499)
.+.|+..+..+..++...++ .++|..+|++..+.++.+..+...+...+.+.|++++|...|+.+.+..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 45677888888888865554 7999999999999999999999999999999999999999999998763
No 212
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.78 E-value=0.028 Score=58.17 Aligned_cols=152 Identities=12% Similarity=0.046 Sum_probs=91.1
Q ss_pred HHHhcCCHHHHHH-HHHHHh-HccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcC
Q 010830 226 GWEKEGNVEEANK-TFGEMV-ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303 (499)
Q Consensus 226 ~~~~~g~~~~a~~-~~~~~~-~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 303 (499)
.....+++++|.+ ++..+. . + ....++..+.+.|.+++|+++.+. + ..-.......|
T Consensus 608 ~~~~~~~~~~a~~~~l~~i~~~-------~--~~~~~~~~l~~~~~~~~a~~~~~~-------~-----~~~f~~~l~~~ 666 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNVEGK-------D--SLTKIARFLEGQEYYEEALNISPD-------Q-----DQKFELALKVG 666 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGCCCH-------H--HHHHHHHHHHHTTCHHHHHHHCCC-------H-----HHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHhcCCch-------H--HHHHHHHHHHhCCChHHheecCCC-------c-----chheehhhhcC
Confidence 3445677887766 443222 1 1 236677777788888888766531 1 11133456678
Q ss_pred CHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHH
Q 010830 304 DSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383 (499)
Q Consensus 304 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 383 (499)
+++.|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.+ |..+...+...|+.+...++
T Consensus 667 ~~~~A~~~~~~~--------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 667 QLTLARDLLTDE--------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp CHHHHHHHHTTC--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHhh--------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 888888775422 3677888888888888888888888887754 34455555556666665555
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHH
Q 010830 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 421 (499)
Q Consensus 384 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 421 (499)
.+.....| -++....+|.+.|++++|.+++.+
T Consensus 730 ~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 730 AKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 55554443 123333344445555555555443
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.74 E-value=0.0045 Score=58.39 Aligned_cols=85 Identities=9% Similarity=-0.049 Sum_probs=52.1
Q ss_pred CchHHHHHHHHHHhc----cCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhHc-----cCCCCchHHhHHHHHHH
Q 010830 197 NQTSRALEFLNRVKK----IVDPD----GDSFAILLEGWEKEGNVEEANKTFGEMVER-----FEWNPEHVLAYETFLIT 263 (499)
Q Consensus 197 ~~~~~a~~~~~~~~~----~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~p~~~~~~~~li~~ 263 (499)
|++++|+.++++... .+.++ ..+++.+..+|...|++++|+.++++..+- ..-.|+...+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 667777777766432 12222 356677777777777777777777665432 12234445566667777
Q ss_pred HhcCCCHHHHHHHHHHHh
Q 010830 264 LIRGKQVDEALKFLRVMK 281 (499)
Q Consensus 264 ~~~~~~~~~a~~~~~~m~ 281 (499)
|...|++++|+.++++..
T Consensus 392 ~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHH
Confidence 777777777777666543
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.59 E-value=0.013 Score=55.35 Aligned_cols=90 Identities=9% Similarity=-0.034 Sum_probs=44.5
Q ss_pred HHhcCCHHHHHHHHHHHhHc-----cCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhh-----CC-CCCC-HhhHHH
Q 010830 227 WEKEGNVEEANKTFGEMVER-----FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG-----EN-CFPT-LKFFSN 294 (499)
Q Consensus 227 ~~~~g~~~~a~~~~~~~~~~-----~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~-~~p~-~~~~~~ 294 (499)
+.+.|++++|+.++++..+. ..-.|....+++.+...|...|++++|+.++++..+ .| ..|+ ..+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 33455555555555555432 011232334555555556666666666655555432 11 1111 234555
Q ss_pred HHHHHHHcCCHhHHHHHHHHHH
Q 010830 295 ALDILVKLNDSTHAVQLWDIMV 316 (499)
Q Consensus 295 li~~~~~~~~~~~a~~~~~~~~ 316 (499)
|...|...|++++|+.++++..
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 5566666666666666655544
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.53 E-value=0.01 Score=55.91 Aligned_cols=64 Identities=8% Similarity=0.053 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHcCCHhHHHHHHHHHHh-----cCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 010830 291 FFSNALDILVKLNDSTHAVQLWDIMVG-----IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354 (499)
Q Consensus 291 ~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 354 (499)
+++.+..+|...|++++|+.++++.++ .|.+.+-...+++.|...|...|++++|+.++++..+
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 444455555555555555555544432 1221222344566666666666666666666665543
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.46 E-value=0.0076 Score=43.29 Aligned_cols=48 Identities=15% Similarity=0.269 Sum_probs=20.4
Q ss_pred CchHHHHHHHHHHhccCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010830 197 NQTSRALEFLNRVKKIVDPDGD-SFAILLEGWEKEGNVEEANKTFGEMV 244 (499)
Q Consensus 197 ~~~~~a~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~ 244 (499)
|++++|...|++..+..+.+.. .+..+...|...|++++|.+.|++..
T Consensus 14 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 14 GDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp TCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444444443332233333 44444444444444444444444443
No 217
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.42 E-value=0.12 Score=53.34 Aligned_cols=129 Identities=12% Similarity=0.064 Sum_probs=68.6
Q ss_pred HHHhcCChhHHHH-HHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHH
Q 010830 156 SYCGAGKYDEAVM-SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234 (499)
Q Consensus 156 ~~~~~g~~~~A~~-~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 234 (499)
.....+++++|.+ ++..+ ++......++..+.+. |..+.|.++.+. . ..-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~-~~~~~a~~~~~~--------~---~~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQ-EYYEEALNISPD--------Q---DQKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHT-TCHHHHHHHCCC--------H---HHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhC-CChHHheecCCC--------c---chheehhhhcCCHH
Confidence 3345566666655 43111 1012224455555555 666666655421 1 11123345567777
Q ss_pred HHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHH
Q 010830 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314 (499)
Q Consensus 235 ~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 314 (499)
+|.++.+.+. +...|..+...+.+.++++.|.+.|.++.+ |..+...+...|+.+...++-+.
T Consensus 670 ~A~~~~~~~~--------~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~ 732 (814)
T 3mkq_A 670 LARDLLTDES--------AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKD 732 (814)
T ss_dssp HHHHHHTTCC--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhhC--------cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHH
Confidence 7777654431 445677777777777777777777776543 33444445555555555555444
Q ss_pred HHhcC
Q 010830 315 MVGIG 319 (499)
Q Consensus 315 ~~~~~ 319 (499)
....|
T Consensus 733 a~~~~ 737 (814)
T 3mkq_A 733 AETTG 737 (814)
T ss_dssp HHHTT
T ss_pred HHHcC
Confidence 44433
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.40 E-value=0.015 Score=54.89 Aligned_cols=89 Identities=10% Similarity=-0.037 Sum_probs=70.6
Q ss_pred cCCCHHHHHHHHHHHhhC--C-CCCC----HhhHHHHHHHHHHcCCHhHHHHHHHHHHh-----cCCCCCCCHhHHHHHH
Q 010830 266 RGKQVDEALKFLRVMKGE--N-CFPT----LKFFSNALDILVKLNDSTHAVQLWDIMVG-----IGFNLMPNLIMYNAVI 333 (499)
Q Consensus 266 ~~~~~~~a~~~~~~m~~~--~-~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~li 333 (499)
+.|++++|+.++++..+. . +.|+ ..+++.+..+|...|++++|+.++++.++ .|.+.+....+++.|.
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 567999999999988752 2 2233 45788899999999999999999988764 2433444567899999
Q ss_pred HHHHcCCChHHHHHHHHHHHH
Q 010830 334 GLLCNNDDVDNVFRFFDQMVF 354 (499)
Q Consensus 334 ~~~~~~~~~~~a~~~~~~m~~ 354 (499)
..|...|++++|+.++++..+
T Consensus 379 ~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHH
Confidence 999999999999999988764
No 219
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.40 E-value=0.27 Score=39.23 Aligned_cols=128 Identities=10% Similarity=0.110 Sum_probs=78.9
Q ss_pred HHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCH
Q 010830 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS 305 (499)
Q Consensus 226 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 305 (499)
...+.|+++.|.++.+++. +...|..|.......|+++-|.+.|.+..+ |..+.-.|.-.|+.
T Consensus 14 LAL~lg~l~~A~e~a~~l~--------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKLN--------DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHTTCHHHHHHHHHHHC--------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHhcCCHHHHHHHHHHhC--------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 3456788888888776651 455788888888888888888888876543 44455556667777
Q ss_pred hHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHH
Q 010830 306 THAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 385 (499)
Q Consensus 306 ~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 385 (499)
+...++-+.....| + ++.-...+.-.|+++++.++|.+..+ -|.. .......|..+.|.++.+
T Consensus 77 e~L~kla~iA~~~g-----~---~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA------~~~A~t~g~~~~a~~~~~ 139 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE-----D---FGSMLLNTFYNNSTKERSSIFAEGGS---LPLA------YAVAKANGDEAAASAFLE 139 (177)
T ss_dssp HHHHHHHHHHHHTT-----C---HHHHHHHHHHHTCHHHHHHHHHHTTC---HHHH------HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCc-----c---HHHHHHHHHHcCCHHHHHHHHHHCCC---hHHH------HHHHHHcCcHHHHHHHHH
Confidence 77666666555554 1 34444455566777777777754322 1111 111123456666776666
Q ss_pred HH
Q 010830 386 EM 387 (499)
Q Consensus 386 ~~ 387 (499)
.+
T Consensus 140 ~~ 141 (177)
T 3mkq_B 140 QA 141 (177)
T ss_dssp HT
T ss_pred Hh
Confidence 55
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.35 E-value=0.36 Score=41.96 Aligned_cols=93 Identities=11% Similarity=0.053 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHHCCCCCC---HHhHHHHHHHHHhc-----CCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcc-CCh
Q 010830 342 VDNVFRFFDQMVFHGAFPD---SLTYNMIFECLIKN-----KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA-DEP 412 (499)
Q Consensus 342 ~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~ 412 (499)
...|...+++..+ +.|+ ...|..+...|.+. |+.++|.+.|++.++.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 4566666666666 3455 34677777777773 78888888888887754222356666777777764 778
Q ss_pred hHHHHHHHHHHHCCCC--ChHHHHHH
Q 010830 413 EIAIEIWNYILENGIL--PLEASANE 436 (499)
Q Consensus 413 ~~a~~~~~~m~~~~~~--p~~~~~~~ 436 (499)
+++.+.+++....... |+....+.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 8888888887775555 55444433
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.24 E-value=0.062 Score=38.06 Aligned_cols=68 Identities=10% Similarity=0.030 Sum_probs=44.4
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 010830 214 DPDGDSFAILLEGWEKEGN---VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284 (499)
Q Consensus 214 ~~~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 284 (499)
+.|...+..+..++...++ .++|..++++..+. .|+++.....+...+.+.|++++|+..|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~---dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL---EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH---CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3455555666665544433 56777777777543 66677777777777777777777777777776654
No 222
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.17 E-value=0.035 Score=39.59 Aligned_cols=58 Identities=12% Similarity=0.196 Sum_probs=46.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 010830 119 MVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMSMH 176 (499)
Q Consensus 119 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 176 (499)
....+.+.|++++|++.|+...+..+.+.. .|..+..+|...|++++|.+.|++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 345667778888888888888887777777 8888888888888888888888887765
No 223
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.97 E-value=0.34 Score=36.36 Aligned_cols=65 Identities=15% Similarity=0.108 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCC
Q 010830 290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGA 357 (499)
Q Consensus 290 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 357 (499)
..+...++.+...|+.++-.+++..+... .+|+....-.+..+|.+.|+..++.+++.+..+.|+
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n---~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKN---NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhcc---CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 33444455555555555555555554332 244555555555555555555555555555555544
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.97 E-value=0.54 Score=40.91 Aligned_cols=90 Identities=9% Similarity=0.104 Sum_probs=69.0
Q ss_pred HhHHHHHHHHHHhcCCCCCCC---HhHHHHHHHHHHcC-----CChHHHHHHHHHHHHCCCCC--CHHhHHHHHHHHHhc
Q 010830 305 STHAVQLWDIMVGIGFNLMPN---LIMYNAVIGLLCNN-----DDVDNVFRFFDQMVFHGAFP--DSLTYNMIFECLIKN 374 (499)
Q Consensus 305 ~~~a~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~ 374 (499)
...|...+++.++. .|+ ...|..+...|.+. |+.++|.+.|++..+. .| +..++......++..
T Consensus 179 l~~A~a~lerAleL----DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~ 252 (301)
T 3u64_A 179 VHAAVMMLERACDL----WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIP 252 (301)
T ss_dssp HHHHHHHHHHHHHH----CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHh----CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHh
Confidence 46777778888874 455 66888888888884 8999999999999884 45 367777777778774
Q ss_pred -CCHhHHHHHHHHHHHCCCC--CChhhHH
Q 010830 375 -KRVHEVEKFFHEMIKNEWQ--PTPLNCA 400 (499)
Q Consensus 375 -g~~~~a~~~~~~~~~~~~~--p~~~~~~ 400 (499)
|+.+++.+.+++.+..... |+....+
T Consensus 253 ~gd~~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 253 LNNRAGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp TTCHHHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred cCCHHHHHHHHHHHHcCCCCCCCChhHHH
Confidence 8999999999999987655 5544333
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.75 E-value=0.085 Score=40.99 Aligned_cols=84 Identities=8% Similarity=-0.070 Sum_probs=59.4
Q ss_pred hHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC---ChHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHhcCChhHHHHHHH
Q 010830 97 SAVDFFRWAGRGQRLSPYAWNLMVDVLGKNG---RFEQMWNAVRVMKEDGVL--SLPTFASIFDSYCGAGKYDEAVMSFD 171 (499)
Q Consensus 97 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~ 171 (499)
.+.+.|.......+++..+...+.-++++++ ++++++.+|+...+.+.| ....+-.|.-+|.+.|++++|.+.++
T Consensus 16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~ 95 (152)
T 1pc2_A 16 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 95 (152)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 3444555443444578888888888888887 566888888888877633 35566667777888888888888888
Q ss_pred HHHhCCCCcCH
Q 010830 172 VMSMHGVEQDV 182 (499)
Q Consensus 172 ~m~~~g~~p~~ 182 (499)
.+.+. .|+.
T Consensus 96 ~lL~i--eP~n 104 (152)
T 1pc2_A 96 GLLQT--EPQN 104 (152)
T ss_dssp HHHHH--CTTC
T ss_pred HHHhc--CCCC
Confidence 88765 5543
No 226
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.39 E-value=0.6 Score=35.07 Aligned_cols=63 Identities=16% Similarity=0.066 Sum_probs=33.1
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcC
Q 010830 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG 319 (499)
Q Consensus 256 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 319 (499)
..+..++.+...|+-++-.+++..+.. +.+|+......+..+|.+.|+..++.+++.+.-+.|
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 344455555555555555555555322 223445555555555666666666655555555555
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.38 E-value=0.19 Score=39.03 Aligned_cols=82 Identities=15% Similarity=0.103 Sum_probs=52.0
Q ss_pred HhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccC---ChhHHHHHHHHHHHCCCCC--hHHHHHHHHHHHHhCCChHHHH
Q 010830 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD---EPEIAIEIWNYILENGILP--LEASANELLVGLRNLGRLSDVR 451 (499)
Q Consensus 377 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~ 451 (499)
+..+.+-|.+..+.+. ++..+.-.+..++++.+ +.+++..+++...+.. .| +...+-.|.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3445555665555553 56666666667777766 5557777777777644 23 2344444556677788888888
Q ss_pred HHHHHHHHc
Q 010830 452 RFAEEMLNR 460 (499)
Q Consensus 452 ~~~~~m~~~ 460 (499)
+.++.+++.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 888877754
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.36 E-value=0.82 Score=36.46 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHH
Q 010830 147 LPTFASIFDSYCGAGKYDEAVMSFDV 172 (499)
Q Consensus 147 ~~~~~~li~~~~~~g~~~~A~~~~~~ 172 (499)
...|..|.......|+++-|.++|..
T Consensus 34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 34 SITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 33444444444444444444444443
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.10 E-value=0.29 Score=35.32 Aligned_cols=65 Identities=6% Similarity=-0.052 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhC-------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 010830 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKED-------GVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176 (499)
Q Consensus 112 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 176 (499)
+...+..+...+.+.|++..|...|+...+. +......+..+..+|.+.|+++.|...+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 4455556667777777777777777666543 2344566777777777777777777777777654
No 230
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.79 E-value=2.8 Score=39.55 Aligned_cols=166 Identities=11% Similarity=0.120 Sum_probs=97.5
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCC---HhHHHHHHHHHHcCCChHHHHHHHHHHHH----CCCCCCH--Hh
Q 010830 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN---LIMYNAVIGLLCNNDDVDNVFRFFDQMVF----HGAFPDS--LT 363 (499)
Q Consensus 293 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~~--~~ 363 (499)
..|...+...|++.+|.+++..+...-...... ...+...++.|...+++.+|..++.+... ....|+. ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 456788888899999999998876432101111 45677778888899999999988887643 2222222 34
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHC-CCCCChhhHHHH----HHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHH
Q 010830 364 YNMIFECLIKNKRVHEVEKFFHEMIKN-EWQPTPLNCATA----ITMLLDADEPEIAIEIWNYILENGILPLEASANELL 438 (499)
Q Consensus 364 ~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l----i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 438 (499)
+...+..+...+++.+|...|.++.+. ...-+...+..+ +.+..-.+....-..+.....+....++...|..++
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~ 300 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLV 300 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHH
Confidence 566677777888999988888777543 111122222211 111111121122223333333322345677888888
Q ss_pred HHHHhC--CChHHHHHHHHHHH
Q 010830 439 VGLRNL--GRLSDVRRFAEEML 458 (499)
Q Consensus 439 ~~~~~~--g~~~~a~~~~~~m~ 458 (499)
.+|... .+++.+.+.++...
T Consensus 301 k~f~~~~L~~~~~~~~~~~~~L 322 (445)
T 4b4t_P 301 KLFTTNELMRWPIVQKTYEPVL 322 (445)
T ss_dssp HHHHHCCSSSHHHHHHHTCSST
T ss_pred HHHHhchHhhhHHHHHHHHHHh
Confidence 888764 45666666655443
No 231
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.66 E-value=0.26 Score=35.55 Aligned_cols=63 Identities=10% Similarity=0.058 Sum_probs=36.9
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHHC------CCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 010830 398 NCATAITMLLDADEPEIAIEIWNYILEN------GILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460 (499)
Q Consensus 398 ~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 460 (499)
-+-.+...+...|+++.|...++...+. .-.....++..|..++.+.|++++|..++++..+.
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3444555555666666666666555431 11234556666666777777777777777766643
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.58 E-value=0.34 Score=37.17 Aligned_cols=51 Identities=8% Similarity=0.111 Sum_probs=23.0
Q ss_pred CCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCC
Q 010830 303 NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG 356 (499)
Q Consensus 303 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 356 (499)
++.++|.++|+.+++.+..+ ...|-...+--.+.|++.+|.+++......+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF---AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF---AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 45555555555554332111 4444444444444555555555555544443
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.22 E-value=0.66 Score=35.62 Aligned_cols=66 Identities=9% Similarity=0.047 Sum_probs=45.0
Q ss_pred cCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHH
Q 010830 409 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476 (499)
Q Consensus 409 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 476 (499)
.+++++|.++|+.+++.+-.- ..+|-.....-.+.|+...|.+++...+..+.+|. ..+...++-+
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~-~~le~a~~nl 138 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL-EMLEIALRNL 138 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH-HHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH-HHHHHHHHhh
Confidence 377888888888886543222 66776666777788888888888888887765543 4455555443
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.01 E-value=0.42 Score=48.01 Aligned_cols=127 Identities=13% Similarity=0.092 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCcCHHH--HHHHHHHHHccCCchHHHHHHHHHH-hc------cCCC-CH
Q 010830 149 TFASIFDSYCGAGK-YDEAVMSFDVMSMHGVEQDVVA--VNSLLSAICRQENQTSRALEFLNRV-KK------IVDP-DG 217 (499)
Q Consensus 149 ~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~~a~~~~~~~-~~------~~~~-~~ 217 (499)
.-..++..+...|+ ++.|..+|+++.+. .|...+ ...++..+.....+--+|.+++.+. +. ...+ +.
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~ 327 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDA 327 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccc
Confidence 34455565666666 57788899888765 343332 2233333333311222344443332 11 1111 11
Q ss_pred ----------HHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHH
Q 010830 218 ----------DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280 (499)
Q Consensus 218 ----------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m 280 (499)
.....-.+.+...|+++.|+++-++... ..|.+-.+|..|..+|.+.|+++.|+-.++.+
T Consensus 328 ~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~---~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 328 DSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTE---LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHh---cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1223334556678999999999998854 48888899999999999999999999888876
No 235
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.26 E-value=8.6 Score=39.66 Aligned_cols=352 Identities=9% Similarity=-0.025 Sum_probs=180.3
Q ss_pred HHHHHHHHHHhCCChH-HHHHHH-HHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC--HHHHHHHHH
Q 010830 115 AWNLMVDVLGKNGRFE-QMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD--VVAVNSLLS 190 (499)
Q Consensus 115 ~~~~li~~~~~~~~~~-~a~~~~-~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~ 190 (499)
+-..+..++...|-.. ..+... +++.+. ......-.+.--+.+..|+.++++.++......+-..+ ...-..+--
T Consensus 341 ~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~-~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaL 419 (963)
T 4ady_A 341 TAVSVANGFMHAGTTDNSFIKANLPWLGKA-QNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGL 419 (963)
T ss_dssp HHHHHHHHHHTTTTCCCHHHHHCHHHHHHC-CTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcchhhhcchhhhhcc-chHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHH
Confidence 3445667777776432 222222 233332 11122223334456778888888888877654211122 233333334
Q ss_pred HHHccCCchHHHHHHHHHHhccCC--------CCHHHHHHHHHHHHhcCC-HHHHHHHHHHHhHccCCCCchHH--hHHH
Q 010830 191 AICRQENQTSRALEFLNRVKKIVD--------PDGDSFAILLEGWEKEGN-VEEANKTFGEMVERFEWNPEHVL--AYET 259 (499)
Q Consensus 191 ~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~--~~~~ 259 (499)
++... |..+++..++........ +....-.++.-+.+-.|. -+++.+.+..+... . .+ ... .-..
T Consensus 420 Gli~a-g~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~d-d-~~-~~~~~AalA 495 (963)
T 4ady_A 420 GLIYA-GFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYN-D-SA-TSGEAAALG 495 (963)
T ss_dssp HHHTT-TTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHT-C-CH-HHHHHHHHH
T ss_pred HHhcC-CCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhc-C-CH-HHHHHHHHH
Confidence 45555 555566666555432111 112222333333333332 23445555554432 1 11 111 1223
Q ss_pred HHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHH--HHcCCHhHHHHHHHHHHhcCCCCCCCHhHH--HHHHHH
Q 010830 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL--VKLNDSTHAVQLWDIMVGIGFNLMPNLIMY--NAVIGL 335 (499)
Q Consensus 260 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~li~~ 335 (499)
+...++-.|+.+....++..+.+.. +..+...+.-++ ...|+.+.+..+.+.+.... .|....- .++.-+
T Consensus 496 LGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~---dp~vRygaa~alglA 569 (963)
T 4ady_A 496 MGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD---ESLLRYGGAFTIALA 569 (963)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS---CHHHHHHHHHHHHHH
T ss_pred HhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC---CHHHHHHHHHHHHHH
Confidence 3444567788888888887766542 333444444444 46788898888888887642 2322222 234456
Q ss_pred HHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCh-hH
Q 010830 336 LCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP-EI 414 (499)
Q Consensus 336 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~ 414 (499)
|+..|+.....++++.+.+. ...++.-...+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|+. .+
T Consensus 570 yaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~ 647 (963)
T 4ady_A 570 YAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQS 647 (963)
T ss_dssp TTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHH
T ss_pred hcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHH
Confidence 77888988888899888874 12233333333335555677777777877666644 34444444444444444443 56
Q ss_pred HHHHHHHHHHCCCCChHHHH-HHH-HHHHHhCCChH----HHHHHHHHH---HH-cCCccCHHHHHHHHHHHHhcccc
Q 010830 415 AIEIWNYILENGILPLEASA-NEL-LVGLRNLGRLS----DVRRFAEEM---LN-RRILIYEVTMHKLKKAFYNESRS 482 (499)
Q Consensus 415 a~~~~~~m~~~~~~p~~~~~-~~l-l~~~~~~g~~~----~a~~~~~~m---~~-~~~~p~~~~~~~ll~~~~~~g~~ 482 (499)
+..++..+.. .+|..+- +++ .-+..-.|..+ +...+++++ .. +.-.++...-..+..+....|+-
T Consensus 648 aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~ 722 (963)
T 4ady_A 648 AIDVLDPLTK---DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGR 722 (963)
T ss_dssp HHHHHHHHHT---CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGG
T ss_pred HHHHHHHHcc---CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCC
Confidence 7778888765 2233332 222 23334334322 244444433 32 22345566667777777776643
No 236
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.26 E-value=0.39 Score=44.49 Aligned_cols=56 Identities=14% Similarity=0.199 Sum_probs=25.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHH
Q 010830 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209 (499)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~ 209 (499)
.++..+...|++++|...+..+.... +-+...|..+|.++.+. |+..+|++.|+.+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~-Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLS-DRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 33444444455555554444443321 22444444555555544 5555555554443
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.96 E-value=1.7 Score=32.30 Aligned_cols=32 Identities=19% Similarity=0.169 Sum_probs=18.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchH
Q 010830 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV 254 (499)
Q Consensus 220 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 254 (499)
.-.+.-++.+.|++++|.+.++.+.+. .|++.
T Consensus 77 lY~LAvg~yklg~Y~~A~~~~~~lL~~---eP~n~ 108 (126)
T 1nzn_A 77 VFYLAVGNYRLKEYEKALKYVRGLLQT---EPQNN 108 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh---CCCCH
Confidence 344555666666666666666666443 55443
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.79 E-value=0.73 Score=34.36 Aligned_cols=85 Identities=14% Similarity=0.077 Sum_probs=56.6
Q ss_pred cCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhH---HHHHHHHHHHCCCCC--hHHHHHHHHHHHHhCCChH
Q 010830 374 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI---AIEIWNYILENGILP--LEASANELLVGLRNLGRLS 448 (499)
Q Consensus 374 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~ 448 (499)
...+..+.+-|.+....|. ++..+--.+..++.+..+... ++.+++.+.+.+ .| .....-.|.-++.+.|+++
T Consensus 14 ~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHH
Confidence 3344555666666555443 666776677777877776655 777888777654 22 2233344556788899999
Q ss_pred HHHHHHHHHHHc
Q 010830 449 DVRRFAEEMLNR 460 (499)
Q Consensus 449 ~a~~~~~~m~~~ 460 (499)
+|.+.++.+++.
T Consensus 92 ~A~~~~~~lL~~ 103 (126)
T 1nzn_A 92 KALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988865
No 239
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=91.93 E-value=6.3 Score=34.83 Aligned_cols=112 Identities=13% Similarity=0.079 Sum_probs=69.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHH----HHHHHhCCCCcCHHHHHHHHHH
Q 010830 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS----FDVMSMHGVEQDVVAVNSLLSA 191 (499)
Q Consensus 116 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~~~~~ll~~ 191 (499)
|-++..-|.+.+++++|++++..- ...+.+.|+...|-++ .+...+.+++++......++..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~g--------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQG--------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHH--------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 346667788888888888886433 2334555666655553 5555667788888887777777
Q ss_pred HHccCCchHHHHHHHHHHhc-----c--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010830 192 ICRQENQTSRALEFLNRVKK-----I--VDPDGDSFAILLEGWEKEGNVEEANKTFG 241 (499)
Q Consensus 192 ~~~~~~~~~~a~~~~~~~~~-----~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 241 (499)
+.........-.++.+.+.+ + ..-+...+..+...|.+.|++.+|+..|-
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 66531111112233333211 1 23467778888888888888888877664
No 240
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.28 E-value=1 Score=31.76 Aligned_cols=58 Identities=17% Similarity=0.232 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHH
Q 010830 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223 (499)
Q Consensus 165 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 223 (499)
++.+-++.+....+.|++.+..+.+++|-+. +++..|.++|+.++........+|..+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRv-ND~alAVR~lE~iK~K~~~~~~iY~~~ 85 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRL-NDFASAVRILEVVKDKAGPHKEIYPYV 85 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHhcCchhhHHHH
Confidence 4445555555555556666666666666555 666666666665554333333334333
No 241
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.16 E-value=9.8 Score=40.86 Aligned_cols=208 Identities=7% Similarity=-0.048 Sum_probs=98.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHc
Q 010830 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302 (499)
Q Consensus 223 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 302 (499)
++..+.+.+..+.+.++..-. |.+...-..+..++...|++++|.+.|.+.-. |+..+....
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~---------- 879 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF---------- 879 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC----------
T ss_pred HHHHHHHhhhHHHHHHHhhhc-------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh----------
Confidence 344445555555554433222 22444445566778888888888888875421 211110000
Q ss_pred CCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCH----HhHHHHHHHHHhcCCHh
Q 010830 303 NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS----LTYNMIFECLIKNKRVH 378 (499)
Q Consensus 303 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~ 378 (499)
..... +..+.........-..-|..++..+.+.+.++.+.++-....+....-+. ..|..+++++...|+++
T Consensus 880 ~~~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye 955 (1139)
T 4fhn_B 880 AVLRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFD 955 (1139)
T ss_dssp SSHHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSG
T ss_pred hhhcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHH
Confidence 00000 01111110001112334566666666666666666666555443111111 14566666677777777
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHhccCC------------hhHHHHHHHHHHH-C-CCCChHHHHHHHHHHHHhC
Q 010830 379 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADE------------PEIAIEIWNYILE-N-GILPLEASANELLVGLRNL 444 (499)
Q Consensus 379 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------------~~~a~~~~~~m~~-~-~~~p~~~~~~~ll~~~~~~ 444 (499)
+|...+-.+-....+ ......|+...+..|. .++..+++..-.+ . .+...+.-|..|-.-+...
T Consensus 956 ~Ay~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r 1033 (1139)
T 4fhn_B 956 AAHVALMVLSTTPLK--KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKH 1033 (1139)
T ss_dssp GGGHHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHH--HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhcc
Confidence 776666655544322 2344445544444433 3444444433221 1 1111112355555556677
Q ss_pred CChHHHHHHH
Q 010830 445 GRLSDVRRFA 454 (499)
Q Consensus 445 g~~~~a~~~~ 454 (499)
|++.+|..++
T Consensus 1034 ~dyR~AA~vm 1043 (1139)
T 4fhn_B 1034 QNYRDAAAII 1043 (1139)
T ss_dssp HTTSCHHHHH
T ss_pred CChHHHHHHH
Confidence 7777765543
No 242
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.59 E-value=3.3 Score=29.18 Aligned_cols=63 Identities=25% Similarity=0.297 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHH
Q 010830 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334 (499)
Q Consensus 269 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 334 (499)
+.=++.+-++.+....+.|+..+..+.+++|.+.+++..|.++++.++.+. .....+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~---~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA---GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT---TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh---cCchhhHHHHHH
Confidence 444566666777777788888888888888888888888888888777552 233445555543
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.26 E-value=12 Score=35.14 Aligned_cols=246 Identities=9% Similarity=-0.006 Sum_probs=128.1
Q ss_pred cCCHHHHHHHHHHHhHccCCC---CchHHhHHHHHHHHhcCCCHHHHHHHHHHHhh-CCCCCCHhhHHHHHHHH----HH
Q 010830 230 EGNVEEANKTFGEMVERFEWN---PEHVLAYETFLITLIRGKQVDEALKFLRVMKG-ENCFPTLKFFSNALDIL----VK 301 (499)
Q Consensus 230 ~g~~~~a~~~~~~~~~~~~~~---p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~----~~ 301 (499)
.|+++.|.+.+..+.+..... +........++..|...++++...+.+..+.. .|..+ .....+++.+ ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhc
Confidence 377888888777776531111 11344566778888888888888777766553 33222 2223333332 22
Q ss_pred cCCHhHHHHHHHHHHhcCCCCCCC--------HhHHHHHHHHHHcCCChHHHHHHHHHHHHC--CCCCC---HHhHHHHH
Q 010830 302 LNDSTHAVQLWDIMVGIGFNLMPN--------LIMYNAVIGLLCNNDDVDNVFRFFDQMVFH--GAFPD---SLTYNMIF 368 (499)
Q Consensus 302 ~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~---~~~~~~ll 368 (499)
....+.... ......-..+... ......|...|...|++.+|.+++.++... |.... ...+...+
T Consensus 107 ~~~~d~~~~--~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~ 184 (445)
T 4b4t_P 107 SKSLDLNTR--ISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQM 184 (445)
T ss_dssp HCTTHHHHH--HHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred CCchhHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 332222111 1111110001111 123355667777778888888888777642 22111 13455666
Q ss_pred HHHHhcCCHhHHHHHHHHHHHC----CCCCC--hhhHHHHHHHHhccCChhHHHHHHHHHHHC-CCCChHHHHH----HH
Q 010830 369 ECLIKNKRVHEVEKFFHEMIKN----EWQPT--PLNCATAITMLLDADEPEIAIEIWNYILEN-GILPLEASAN----EL 437 (499)
Q Consensus 369 ~~~~~~g~~~~a~~~~~~~~~~----~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~----~l 437 (499)
+.|...+++..|..++.++... ...|+ ...|...+..+...+++.+|.+.|.++.+. ...-|...+. .+
T Consensus 185 rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~ 264 (445)
T 4b4t_P 185 ELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHI 264 (445)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence 7777778888888777776431 11121 123455566666677777777766665431 1111222222 22
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhc
Q 010830 438 LVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 479 (499)
Q Consensus 438 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 479 (499)
+.+..-.+..+.-..++.........++...+..++++|...
T Consensus 265 v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~ 306 (445)
T 4b4t_P 265 VYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTN 306 (445)
T ss_dssp HHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhc
Confidence 223333444444444444444444445666777777777664
No 244
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.14 E-value=19 Score=37.21 Aligned_cols=299 Identities=9% Similarity=0.005 Sum_probs=166.9
Q ss_pred HHHHHHHHHHhcCChhHH-HHHH-HHHHhCCCCcCHHHHHHH-HHHHHccCCchHHHHHHHHHHhcc---CCCCHHHHHH
Q 010830 149 TFASIFDSYCGAGKYDEA-VMSF-DVMSMHGVEQDVVAVNSL-LSAICRQENQTSRALEFLNRVKKI---VDPDGDSFAI 222 (499)
Q Consensus 149 ~~~~li~~~~~~g~~~~A-~~~~-~~m~~~g~~p~~~~~~~l-l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~ 222 (499)
+-.++..++...|-..+. +... +.+-+. . +-.-+.+. --+.... |+.++++.+++....+ ..+....-..
T Consensus 341 ~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~--~-~~~k~sA~aSLGlIh~-g~~~~gl~~L~~yL~~~~s~~~~ik~GAl 416 (963)
T 4ady_A 341 TAVSVANGFMHAGTTDNSFIKANLPWLGKA--Q-NWAKFTATASLGVIHK-GNLLEGKKVMAPYLPGSRASSRFIKGGSL 416 (963)
T ss_dssp HHHHHHHHHHTTTTCCCHHHHHCHHHHHHC--C-THHHHHHHHHHHHHTS-SCTTTHHHHHTTTSTTSCCSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcchhhhcchhhhhcc--c-hHHHHHHHHHhhhhcc-CchHHHHHHHHHhccccCCCcHHHHHHHH
Confidence 445677788888854333 2222 223221 1 22222222 2244556 8888888887765431 1222334444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhHccCC---C--CchHHhHHHHHHHHhcCCC-HHHHHHHHHHHhhCCCCCCHhhHH--H
Q 010830 223 LLEGWEKEGNVEEANKTFGEMVERFEW---N--PEHVLAYETFLITLIRGKQ-VDEALKFLRVMKGENCFPTLKFFS--N 294 (499)
Q Consensus 223 ll~~~~~~g~~~~a~~~~~~~~~~~~~---~--p~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~--~ 294 (499)
+.-+...+|..+++..++......... . .+....-.++.-+++-.|. -+++.+.+..+....- ....... .
T Consensus 417 laLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalA 495 (963)
T 4ady_A 417 YGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALG 495 (963)
T ss_dssp HHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHH
T ss_pred HHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHH
Confidence 555566677766777777765543110 0 0022233444444444443 3455666666554321 1111122 2
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHH---HHHHHH
Q 010830 295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYN---MIFECL 371 (499)
Q Consensus 295 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~---~ll~~~ 371 (499)
+-..+.-.|+.+....++..+.+.. ..+..-...+.-++...|+.+.+..+.+.+... ..|. .-|. ++.-+|
T Consensus 496 LGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~-vRygaa~alglAy 570 (963)
T 4ady_A 496 MGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLAS-DESL-LRYGGAFTIALAY 570 (963)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHH-HHHHHHHHHHHHT
T ss_pred HhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHH-HHHHHHHHHHHHh
Confidence 3333456688888888888777542 223333334444555789999999999988874 1222 2233 334467
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCCh-HHH
Q 010830 372 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL-SDV 450 (499)
Q Consensus 372 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~-~~a 450 (499)
+..|+.....++++.+.+.. ..+..-...+.-++...|+.+.+.++++.+.+.+ .|.+..-..+.-+....|.. .++
T Consensus 571 aGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~a 648 (963)
T 4ady_A 571 AGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSA 648 (963)
T ss_dssp TTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHH
T ss_pred cCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHH
Confidence 77889877777999888742 2233333344445556777788888887766644 56766666666666666664 578
Q ss_pred HHHHHHHHH
Q 010830 451 RRFAEEMLN 459 (499)
Q Consensus 451 ~~~~~~m~~ 459 (499)
..++..+..
T Consensus 649 id~L~~L~~ 657 (963)
T 4ady_A 649 IDVLDPLTK 657 (963)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHcc
Confidence 888888874
No 245
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.94 E-value=14 Score=39.68 Aligned_cols=184 Identities=9% Similarity=0.062 Sum_probs=96.2
Q ss_pred cCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCC-----------------------CCCHH
Q 010830 92 YDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-----------------------VLSLP 148 (499)
Q Consensus 92 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----------------------~~~~~ 148 (499)
.+..+.+.++..|.. .++..--.+..++...|++++|.+.|.+....- ..-..
T Consensus 825 ~~~~~~~~~l~~~~~----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 900 (1139)
T 4fhn_B 825 FKQYNACMQLIGWLN----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSC 900 (1139)
T ss_dssp HSCTTHHHHHHHHSC----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHH
T ss_pred hhhHHHHHHHhhhcc----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHH
Confidence 344555666555542 233333445566666777777777775432100 00123
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC----HHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHH
Q 010830 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD----VVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224 (499)
Q Consensus 149 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll 224 (499)
-|..++..+-+.+.++.+.+.-....+..-.-+ ...|..+.+.+... |++++|...+-.+... ..-......++
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l-~~ye~Ay~aL~~~pd~-~~r~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA-GKFDAAHVALMVLSTT-PLKKSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHH-CCSGGGGHHHHHHHHS-SSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhh-CCHHHHHHHHHhCCCH-HHHHHHHHHHH
Confidence 466677777777777777766655543321111 12466667777777 7777777766555431 12234444455
Q ss_pred HHHHhc------------CCHHHHHHHHHHHhHcc-CCCCchHHhHHHHHHHHhcCCCHHHHHH-HHHHHhh
Q 010830 225 EGWEKE------------GNVEEANKTFGEMVERF-EWNPEHVLAYETFLITLIRGKQVDEALK-FLRVMKG 282 (499)
Q Consensus 225 ~~~~~~------------g~~~~a~~~~~~~~~~~-~~~p~~~~~~~~li~~~~~~~~~~~a~~-~~~~m~~ 282 (499)
...++. |..++..+++..-.+.. .... .+.-|..|-.-+...|++.+|-. +|+...+
T Consensus 979 ~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~-~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 979 NQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVES-QPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCC-STHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCcccc-CCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 544444 44456666665443321 1111 22356666666777777665544 4555443
No 246
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=89.84 E-value=10 Score=33.73 Aligned_cols=112 Identities=14% Similarity=0.133 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHH----HHHHhCCCCcCHHHHHHHHH
Q 010830 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSF----DVMSMHGVEQDVVAVNSLLS 190 (499)
Q Consensus 115 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~~~~~ll~ 190 (499)
+|-++..-|.+.+++++|++++..- ...+.+.|+...|-++- +.+.+.++++|......++.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G--------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV--------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH--------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3445667788889999998886332 23345556665555444 55566677888877777777
Q ss_pred HHHccCCchHHHHHHHHHHhc-----c--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010830 191 AICRQENQTSRALEFLNRVKK-----I--VDPDGDSFAILLEGWEKEGNVEEANKTF 240 (499)
Q Consensus 191 ~~~~~~~~~~~a~~~~~~~~~-----~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 240 (499)
.+......-..-..+.+.+.+ + ..-|......+...|.+.+++.+|+..|
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 776652111112222322211 2 3346677777778888888887777766
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.18 E-value=1.9 Score=39.92 Aligned_cols=68 Identities=12% Similarity=0.069 Sum_probs=47.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhh-----CCCCCCHhh
Q 010830 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG-----ENCFPTLKF 291 (499)
Q Consensus 221 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~ 291 (499)
..++..+...|+.+++...+..+... .|-+...|..+|.++.+.|+..+|++.|++..+ .|+.|+..+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~---~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFE---HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34566667777888877777777544 555666777788888888888888877776543 477776544
No 248
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=88.30 E-value=9.9 Score=34.32 Aligned_cols=69 Identities=13% Similarity=0.165 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCC--HHHHHHHHHHHhhCCCCCCHhhH
Q 010830 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ--VDEALKFLRVMKGENCFPTLKFF 292 (499)
Q Consensus 219 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~~ 292 (499)
....++.-|...|+.++|...++++... ...+ .....+|......++ .+.+-.++..+.. ++-+.....
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~p-~~~~---~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~ls~~~i~ 126 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNLG-EMKS---GVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTNDVE 126 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTCC-GGGG---GHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSCCHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCCc-hhHH---HHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCCHHHHH
Confidence 4566788888888888888888887432 2222 223334443333332 3344455555553 444333333
No 249
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=87.97 E-value=14 Score=37.15 Aligned_cols=129 Identities=9% Similarity=0.005 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhCCC-hHHHHHHHHHHHhCCCCCHHHHH-HHHHHHHhcC-ChhHHHHHHHHHHhC------CCCc-CHH-
Q 010830 115 AWNLMVDVLGKNGR-FEQMWNAVRVMKEDGVLSLPTFA-SIFDSYCGAG-KYDEAVMSFDVMSMH------GVEQ-DVV- 183 (499)
Q Consensus 115 ~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~-~li~~~~~~g-~~~~A~~~~~~m~~~------g~~p-~~~- 183 (499)
.-..+++.+...|+ ++.|+++|+++...++.....+. .++..+...+ +--+|.+++.+..+. ...+ +..
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 44555666666666 58899999999888754333333 3333333332 222344444443211 1111 111
Q ss_pred ---------HHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010830 184 ---------AVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244 (499)
Q Consensus 184 ---------~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 244 (499)
..+.-..-|... |+++.|+++-++...-.+.+-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K-~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNR-GDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhcc-CcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 111122334555 999999999999887777789999999999999999999999999884
No 250
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=87.95 E-value=5.8 Score=33.92 Aligned_cols=118 Identities=10% Similarity=0.022 Sum_probs=75.8
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCch
Q 010830 120 VDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQT 199 (499)
Q Consensus 120 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 199 (499)
+..+.+.|++++|+.....-.+..+.|...-..+++.+|-.|++++|.+-++...+. .|+...-..+.+.+.+
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~----- 76 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVK----- 76 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHH-----
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHH-----
Confidence 345678899999999999999999999999999999999999999999998888665 4443332222222221
Q ss_pred HHHHHHHHHHhc-----c-CCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHhHc
Q 010830 200 SRALEFLNRVKK-----I-VDPDGDSFAILLEGW--EKEGNVEEANKTFGEMVER 246 (499)
Q Consensus 200 ~~a~~~~~~~~~-----~-~~~~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~~ 246 (499)
|+..-..+-. + +.....-...++.+. ...|+.++|.++-.+..+.
T Consensus 77 --aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 77 --AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp --HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 1122222211 1 111222233344443 3468888888887777553
No 251
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=87.78 E-value=5.8 Score=29.69 Aligned_cols=62 Identities=26% Similarity=0.297 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHH
Q 010830 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG 334 (499)
Q Consensus 270 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 334 (499)
.=+..+-++.+....+.|+..+....+++|.+.+++..|..+++-++.+. .+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~---~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA---GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT---TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc---CCchhhHHHHHH
Confidence 33455566666777788888888888888888888888888888777552 334445655543
No 252
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=87.41 E-value=2.5 Score=31.63 Aligned_cols=46 Identities=17% Similarity=0.161 Sum_probs=22.9
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhcc
Q 010830 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI 212 (499)
Q Consensus 166 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~ 212 (499)
..+-++.+....+.|+.....+.+++|-+. +|+..|..+|+.++..
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRv-NDfalAVR~lE~vK~K 117 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRL-NDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHh-hhHHHHHHHHHHHHHh
Confidence 334444444444455555555555555555 5555555555555443
No 253
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=87.19 E-value=0.0017 Score=60.25 Aligned_cols=114 Identities=12% Similarity=0.237 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 010830 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC 193 (499)
Q Consensus 114 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 193 (499)
..|..|.++....+++.+|++-|-+ . .|+..|..+|.+..+.|.+++-.+.+...++.. .+...=+.|+-+|+
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIk--A---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayA 127 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIK--A---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALA 127 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCC--C---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHHHh--C---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHH
Confidence 4555666666666665555544311 1 133335566666666666666665555444332 22223335555565
Q ss_pred ccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010830 194 RQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFG 241 (499)
Q Consensus 194 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 241 (499)
+. ++..+.++++. .||..-...+.+-|...|.++.|.-+|.
T Consensus 128 k~-~rL~elEefl~------~~N~A~iq~VGDrcf~e~lYeAAKilys 168 (624)
T 3lvg_A 128 KT-NRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYN 168 (624)
T ss_dssp TS-CSSSTTTSTTS------CCSSSCTHHHHHHHHHSCCSTTSSTTGG
T ss_pred hh-CcHHHHHHHHc------CCCcccHHHHHHHHHHccCHHHHHHHHH
Confidence 55 44433222211 2333333444444444444444444443
No 254
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=85.33 E-value=22 Score=32.57 Aligned_cols=235 Identities=7% Similarity=-0.051 Sum_probs=116.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCc--hHHhHHHHHHHHhcC-CCHHHHHHHHHHHhhCCCCCCHhhH---
Q 010830 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE--HVLAYETFLITLIRG-KQVDEALKFLRVMKGENCFPTLKFF--- 292 (499)
Q Consensus 219 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~~~--- 292 (499)
....|...|.+.|+.++..+++.....-++.-+. .......+++.+... +..+.-.++..+..+... -+..+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 3445666677777777766666665443222221 122344555555554 233333333333322110 011122
Q ss_pred ---HHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCC---CHhHHHHHHHHHHcCCChHHHHHHHHHHHHC--CCCCCHHhH
Q 010830 293 ---SNALDILVKLNDSTHAVQLWDIMVGIGFNLMP---NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH--GAFPDSLTY 364 (499)
Q Consensus 293 ---~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~ 364 (499)
.-++..|...|++.+|.+++..+.+.-..... -..+|-.-++.|...+++.++...+...... .+.+++...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 24677788888888888888777764200111 1345666677788888888888888776542 222333222
Q ss_pred HHH----HHHHH-hcCCHhHHHHHHHHHHHC----CCC--CChhhHHHHHHHHhccCChhHHHHHHH-HHHHCCCCChHH
Q 010830 365 NMI----FECLI-KNKRVHEVEKFFHEMIKN----EWQ--PTPLNCATAITMLLDADEPEIAIEIWN-YILENGILPLEA 432 (499)
Q Consensus 365 ~~l----l~~~~-~~g~~~~a~~~~~~~~~~----~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~~~~p~~~ 432 (499)
..+ ...+. ..+++..|...|-+..+. +.. .+...|..|.... .++..+...++. .....-..|...
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl--~~~r~el~~~l~~~~~~~~~~pei~ 257 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIM--LGQSDDVNQLVSGKLAITYSGRDID 257 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH--TTCGGGHHHHHHSHHHHTTCSHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH--cCCHHHHHHHhccccccccCCccHH
Confidence 111 11234 678888887777665432 110 0111232222222 233333333222 111111346666
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHH
Q 010830 433 SANELLVGLRNLGRLSDVRRFAEEM 457 (499)
Q Consensus 433 ~~~~ll~~~~~~g~~~~a~~~~~~m 457 (499)
.+..++.+| +.+++.+...+++..
T Consensus 258 ~l~~L~~a~-~~~dl~~f~~iL~~~ 281 (394)
T 3txn_A 258 AMKSVAEAS-HKRSLADFQAALKEY 281 (394)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHS
T ss_pred HHHHHHHHH-HhCCHHHHHHHHHHH
Confidence 666666665 456776666666554
No 255
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=84.79 E-value=24 Score=32.41 Aligned_cols=234 Identities=12% Similarity=0.026 Sum_probs=113.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC-CCCc---CHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHH-----
Q 010830 150 FASIFDSYCGAGKYDEAVMSFDVMSMH-GVEQ---DVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSF----- 220 (499)
Q Consensus 150 ~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p---~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----- 220 (499)
...|...|.+.|+.++..+++...... +.-+ .......++..+....+..+.-.++.....+.-.....+|
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l 101 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666665554321 1111 1223445555555543444333333332211000111122
Q ss_pred -HHHHHHHHhcCCHHHHHHHHHHHhHccCCCCch----HHhHHHHHHHHhcCCCHHHHHHHHHHHhhC--CCCCCHhhHH
Q 010830 221 -AILLEGWEKEGNVEEANKTFGEMVERFEWNPEH----VLAYETFLITLIRGKQVDEALKFLRVMKGE--NCFPTLKFFS 293 (499)
Q Consensus 221 -~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~ 293 (499)
.-++..|...|++.+|.+++.++.+...- .++ ...|-.-+..|...+++.++...+...... .+.++..+-.
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~-~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKK-LDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTT-SSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 24778888888888888888887764221 111 234566677788888888888888766532 2223332221
Q ss_pred HH----HHHHH-HcCCHhHHHHHHHHHHhcCCCC-CC---CHhHHHHHHHHHHcCCChHHHHHHHH-HHHHCCCCCCHHh
Q 010830 294 NA----LDILV-KLNDSTHAVQLWDIMVGIGFNL-MP---NLIMYNAVIGLLCNNDDVDNVFRFFD-QMVFHGAFPDSLT 363 (499)
Q Consensus 294 ~l----i~~~~-~~~~~~~a~~~~~~~~~~~~~~-~~---~~~~~~~li~~~~~~~~~~~a~~~~~-~m~~~g~~p~~~~ 363 (499)
.+ ...+. ..+++..|...|-+..+.-... .| +...|..+..... ++..+...++. .....-..|+...
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~--~~r~el~~~l~~~~~~~~~~pei~~ 258 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIML--GQSDDVNQLVSGKLAITYSGRDIDA 258 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHSHHHHTTCSHHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHc--CCHHHHHHHhccccccccCCccHHH
Confidence 11 12234 5788888887776654221000 11 1223433333222 22222222221 1111112355555
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHH
Q 010830 364 YNMIFECLIKNKRVHEVEKFFHEM 387 (499)
Q Consensus 364 ~~~ll~~~~~~g~~~~a~~~~~~~ 387 (499)
+..++.+| ..+++.+...+++..
T Consensus 259 l~~L~~a~-~~~dl~~f~~iL~~~ 281 (394)
T 3txn_A 259 MKSVAEAS-HKRSLADFQAALKEY 281 (394)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHS
T ss_pred HHHHHHHH-HhCCHHHHHHHHHHH
Confidence 56666654 556777666666654
No 256
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.04 E-value=12 Score=34.88 Aligned_cols=100 Identities=11% Similarity=-0.024 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCC-chHHhHHHHHHHHhcCCCHHHHHHHHHHHhh---CCCCCCHhhH-
Q 010830 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP-EHVLAYETFLITLIRGKQVDEALKFLRVMKG---ENCFPTLKFF- 292 (499)
Q Consensus 218 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~p~~~~~- 292 (499)
.++..+...|.+.|+++.|.+.|.++... ...+ .-...+-..++.+...+++..+...+.+... .+-.++...-
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~-~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSK-AISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHH-HTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 46677888899999999999999998774 2222 1345677788888889999999888887653 3322322110
Q ss_pred -HHHHHHHHHcCCHhHHHHHHHHHHhc
Q 010830 293 -SNALDILVKLNDSTHAVQLWDIMVGI 318 (499)
Q Consensus 293 -~~li~~~~~~~~~~~a~~~~~~~~~~ 318 (499)
..-...+...+++..|.+.|-+....
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 01111223567888888887776543
No 257
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=83.76 E-value=6 Score=30.98 Aligned_cols=56 Identities=5% Similarity=0.036 Sum_probs=31.1
Q ss_pred HHHHHccCCchHHHHHHHHHHhc--cCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 010830 189 LSAICRQENQTSRALEFLNRVKK--IVDPD-------GDSFAILLEGWEKEGNVEEANKTFGEMVE 245 (499)
Q Consensus 189 l~~~~~~~~~~~~a~~~~~~~~~--~~~~~-------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 245 (499)
+..+... +.++.|+-+.+.+.. +..++ ..++..+.+++...|++..|...|++..+
T Consensus 27 ik~L~d~-~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 27 VRDMAAA-GLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHh-hhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3444445 566666655555432 11222 12445566677777777777777777533
No 258
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.71 E-value=12 Score=35.08 Aligned_cols=98 Identities=9% Similarity=-0.141 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHHHHC--CCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHC---CCCCChhh--H
Q 010830 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFH--GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN---EWQPTPLN--C 399 (499)
Q Consensus 327 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~--~ 399 (499)
.++..+...|.+.|++++|.+.|.++... +..--...+-.+++.+...+++..+...+.++... +-.++... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 36677888888888888888888888764 22233456777778888888888888888777542 22222111 0
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHH
Q 010830 400 ATAITMLLDADEPEIAIEIWNYILE 424 (499)
Q Consensus 400 ~~li~~~~~~g~~~~a~~~~~~m~~ 424 (499)
..-...+...+++..|.+.|-+...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 1111123355777777776666543
No 259
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=82.22 E-value=0.011 Score=54.90 Aligned_cols=216 Identities=9% Similarity=0.104 Sum_probs=127.3
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 010830 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191 (499)
Q Consensus 112 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 191 (499)
|+..|..+|.+..+.|++++-++.+...++. ..+...=+.|+-+|++.++..+-.+.+. .||..-...+-+-
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDr 153 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDR 153 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHH
Confidence 4445666677777777777666666544433 3233334566677777776655443331 3555455555555
Q ss_pred HHccCCchHHHHHHHHHHhc---------------------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCC
Q 010830 192 ICRQENQTSRALEFLNRVKK---------------------IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250 (499)
Q Consensus 192 ~~~~~~~~~~a~~~~~~~~~---------------------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 250 (499)
|... |.++.|.-+|..+.. .-..+..||..+-.+|...+.+.-|.-.--.+.- .
T Consensus 154 cf~e-~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv----h 228 (624)
T 3lvg_A 154 CYDE-KMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV----H 228 (624)
T ss_dssp HHHS-CCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC----C
T ss_pred HHHc-cCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc----c
Confidence 6666 666666666655422 1135678899999999999888877554444432 1
Q ss_pred CchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCC------
Q 010830 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP------ 324 (499)
Q Consensus 251 p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~------ 324 (499)
|+ -...++..|-..|.+++.+.+++.-.... ......|+.|.-.|+|- ++++..+.++..-.+ .+++.
T Consensus 229 ad---eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sr-iNipKviracE 302 (624)
T 3lvg_A 229 AD---ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSR-VNIPKVLRAAE 302 (624)
T ss_dssp SS---CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSS-SCCTTTHHHHT
T ss_pred HH---HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh-ccHHHHHHHHH
Confidence 21 23446777888888888888888765321 24567777777777665 333333332221111 00111
Q ss_pred CHhHHHHHHHHHHcCCChHHHH
Q 010830 325 NLIMYNAVIGLLCNNDDVDNVF 346 (499)
Q Consensus 325 ~~~~~~~li~~~~~~~~~~~a~ 346 (499)
....|.-++-.|++-.+++.|.
T Consensus 303 ~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 303 QAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHhhHHHHHHHHhcchhHHHHH
Confidence 4567788888888777777664
No 260
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=79.75 E-value=17 Score=27.17 Aligned_cols=65 Identities=11% Similarity=0.250 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCC--hhHHHHHHHHHHHCCCCC
Q 010830 364 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE--PEIAIEIWNYILENGILP 429 (499)
Q Consensus 364 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p 429 (499)
...++.-|...|+.++|...++++....+ -...+...+..++-+.++ .+.+..++..+.+.|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 45677777778888888888877732111 112223334444444322 345666666666655543
No 261
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=77.87 E-value=16 Score=28.23 Aligned_cols=66 Identities=11% Similarity=0.246 Sum_probs=39.3
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCC--hhHHHHHHHHHHHCCCCC
Q 010830 363 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE--PEIAIEIWNYILENGILP 429 (499)
Q Consensus 363 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p 429 (499)
..+.++.-|...|+.++|...++++....+ -...+...+..++-+.++ .+.+..++..+.+.++-+
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 356778888888999999998888742111 112233344444444322 345666777777666543
No 262
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=77.71 E-value=20 Score=27.65 Aligned_cols=49 Identities=14% Similarity=0.197 Sum_probs=25.5
Q ss_pred HHHHHHHHHhCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc
Q 010830 132 MWNAVRVMKEDGV--LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQ 180 (499)
Q Consensus 132 a~~~~~~m~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 180 (499)
+.++|..|...++ --...|......+-..|++.+|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4555555555553 334445555555555555555555555555444333
No 263
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=77.07 E-value=28 Score=28.26 Aligned_cols=57 Identities=28% Similarity=0.347 Sum_probs=44.6
Q ss_pred cCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCC
Q 010830 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287 (499)
Q Consensus 230 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 287 (499)
++...++.++|..|..+ |+--.-+.-|......+...|++++|.++|+.-.+.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~-~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNK-GIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHH-TSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44567888888888775 7766666778888888888888888888888877777777
No 264
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=75.28 E-value=13 Score=31.73 Aligned_cols=52 Identities=15% Similarity=0.078 Sum_probs=21.2
Q ss_pred hcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 010830 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG 317 (499)
Q Consensus 265 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 317 (499)
.+.|+++++++....-.+.. +-|...-..++..+|-.|+++.|.+-++...+
T Consensus 8 l~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33444444444443333322 12333333344444444444444444444443
No 265
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=74.23 E-value=25 Score=26.32 Aligned_cols=71 Identities=14% Similarity=0.162 Sum_probs=44.2
Q ss_pred CCChhhHHHHHHHHhccCC---hhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccC
Q 010830 393 QPTPLNCATAITMLLDADE---PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 465 (499)
Q Consensus 393 ~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~ 465 (499)
.|+..+--.+..++.+..+ ..+++.+++++.+.+..-.....-.|.-++.+.|++++|.+..+.+.+. .|+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~ 110 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 110 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCC
Confidence 4555555555556665544 3467777777776552223444555667778888888888888887754 454
No 266
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=74.21 E-value=19 Score=25.24 Aligned_cols=78 Identities=12% Similarity=0.105 Sum_probs=38.5
Q ss_pred CchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010830 94 SPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173 (499)
Q Consensus 94 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 173 (499)
.-++|.-+-+|+..... ....--.-+..+...|++++|..+.+.+. .||...|.+|-. .+.|-.+++...+.++
T Consensus 21 ~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c---~pdlepw~ALce--~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ-DEAARLIRISSLANQGRYQEALAFAHGNP---WPALEPWFALCE--WHLGLGAALDRRLAGL 94 (115)
T ss_dssp CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC---CGGGHHHHHHHH--HHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC---CchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 44566666666643222 22222223344556666666655543332 345555544433 3455556666555555
Q ss_pred HhCC
Q 010830 174 SMHG 177 (499)
Q Consensus 174 ~~~g 177 (499)
..+|
T Consensus 95 a~sg 98 (115)
T 2uwj_G 95 GGSS 98 (115)
T ss_dssp HTCS
T ss_pred HhCC
Confidence 5554
No 267
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=74.04 E-value=20 Score=25.18 Aligned_cols=78 Identities=8% Similarity=0.050 Sum_probs=37.2
Q ss_pred CchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010830 94 SPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173 (499)
Q Consensus 94 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 173 (499)
.-++|.-+-+|+..... ....--.-+..+...|++++|..+.+.+. .||...|.+|-. .+.|-.+++...+.++
T Consensus 22 ~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c---~pdlepw~ALce--~rlGl~s~le~rL~~l 95 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE-EEAVQLIRLSSLMNRGDYASALQQGNKLA---YPDLEPWLALCE--YRLGLGSALESRLNRL 95 (116)
T ss_dssp CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC---CGGGHHHHHHHH--HHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC---CchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 34556666666543222 22222223344555666666655544333 345544544433 2445555555555555
Q ss_pred HhCC
Q 010830 174 SMHG 177 (499)
Q Consensus 174 ~~~g 177 (499)
..+|
T Consensus 96 a~sg 99 (116)
T 2p58_C 96 ARSQ 99 (116)
T ss_dssp TTCC
T ss_pred HhCC
Confidence 5444
No 268
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=72.15 E-value=33 Score=26.83 Aligned_cols=118 Identities=8% Similarity=-0.034 Sum_probs=66.6
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHC-CCCCCH-------HhHHHHHHHHHhcCCHhHHHHHHHHHHHC--CCCCChh
Q 010830 328 MYNAVIGLLCNNDDVDNVFRFFDQMVFH-GAFPDS-------LTYNMIFECLIKNKRVHEVEKFFHEMIKN--EWQPTPL 397 (499)
Q Consensus 328 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~ 397 (499)
++-.-++.+...|.++.|+-+.+.+... +..|+. .++..+.+++...|++..|...|++.++. .+.-+..
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3444567778888888888887776542 123332 24566667888888888888888887553 1111111
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 010830 398 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 458 (499)
Q Consensus 398 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 458 (499)
++..+- ....... ......+...---+..+|.+.|++++|+.+++...
T Consensus 102 ~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 102 VRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp ----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred cccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 111110 0000000 01123344444457788999999999999988654
No 269
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=70.51 E-value=31 Score=25.81 Aligned_cols=20 Identities=5% Similarity=0.111 Sum_probs=8.8
Q ss_pred HHHhcCCHhHHHHHHHHHHH
Q 010830 370 CLIKNKRVHEVEKFFHEMIK 389 (499)
Q Consensus 370 ~~~~~g~~~~a~~~~~~~~~ 389 (499)
++.+.|++++|.+..+.+++
T Consensus 87 g~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 87 GCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 44444444444444444443
No 270
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=69.80 E-value=23 Score=30.22 Aligned_cols=21 Identities=24% Similarity=0.200 Sum_probs=9.2
Q ss_pred CChHHHHHHHHHHHHCCCCCC
Q 010830 340 DDVDNVFRFFDQMVFHGAFPD 360 (499)
Q Consensus 340 ~~~~~a~~~~~~m~~~g~~p~ 360 (499)
++.....++++.+.+.|..++
T Consensus 193 ~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 193 SDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp SCTTTHHHHHHHHHHTTCCSS
T ss_pred cccchHHHHHHHHHHcCCCCC
Confidence 333333444444555544433
No 271
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=69.67 E-value=26 Score=24.60 Aligned_cols=48 Identities=17% Similarity=0.152 Sum_probs=23.0
Q ss_pred HHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 010830 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245 (499)
Q Consensus 192 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 245 (499)
+.+. |++++|..+.+.+. .||...|..|.. .+.|.-+++...+.++..
T Consensus 49 LmNr-G~Yq~Al~l~~~~c---~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 49 LANQ-GRYQEALAFAHGNP---WPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp HHHT-TCHHHHHGGGTTCC---CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHcc-hhHHHHHHhcCCCC---CchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 3344 55555555543332 355555544433 244555555555544443
No 272
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=68.89 E-value=27 Score=24.54 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=20.0
Q ss_pred CchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010830 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244 (499)
Q Consensus 197 ~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 244 (499)
|++++|..+.+.+. .||...|..|.. .+.|.-+++...+.++.
T Consensus 54 G~Yq~Al~l~~~~c---~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 54 GDYASALQQGNKLA---YPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHTTSC---CGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hhHHHHHHhcCCCC---CchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 55555555544333 355555544433 24444455544444443
No 273
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=68.24 E-value=63 Score=28.45 Aligned_cols=22 Identities=0% Similarity=-0.126 Sum_probs=10.1
Q ss_pred HhhCCCCCCHhhHHHHHHHHHH
Q 010830 280 MKGENCFPTLKFFSNALDILVK 301 (499)
Q Consensus 280 m~~~~~~p~~~~~~~li~~~~~ 301 (499)
..+.+++++......++..+..
T Consensus 83 ~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 83 YDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHHHHHHHHHHHHH
Confidence 3344455554444444444433
No 274
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=68.12 E-value=20 Score=30.63 Aligned_cols=47 Identities=15% Similarity=0.061 Sum_probs=21.7
Q ss_pred ccCChhHHHHHHHHHHHCCCCChHHH--HHHHHHHHHhCCChHHHHHHH
Q 010830 408 DADEPEIAIEIWNYILENGILPLEAS--ANELLVGLRNLGRLSDVRRFA 454 (499)
Q Consensus 408 ~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~g~~~~a~~~~ 454 (499)
..+......++.+.+.+.|..++... -.+.+...++.|+.+-+..++
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 239 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 239 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 34554445566666666665444321 112233344556654443333
No 275
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=67.58 E-value=48 Score=26.88 Aligned_cols=54 Identities=15% Similarity=0.089 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHHCCCCCh-HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccC
Q 010830 412 PEIAIEIWNYILENGILPL-EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 465 (499)
Q Consensus 412 ~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~ 465 (499)
...+..+|..|...|+.-. ...|......+...|++++|.++|+.-++.+-.|-
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4455555555554444322 23344444445555555555555555555554443
No 276
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=66.06 E-value=74 Score=28.44 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=15.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHh
Q 010830 221 AILLEGWEKEGNVEEANKTFGEMV 244 (499)
Q Consensus 221 ~~ll~~~~~~g~~~~a~~~~~~~~ 244 (499)
..++.-|...|+.++|.+.++++.
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcC
Confidence 345666666777777777666663
No 277
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=65.08 E-value=10 Score=30.62 Aligned_cols=15 Identities=0% Similarity=0.036 Sum_probs=7.8
Q ss_pred HHhCCChHHHHHHHH
Q 010830 123 LGKNGRFEQMWNAVR 137 (499)
Q Consensus 123 ~~~~~~~~~a~~~~~ 137 (499)
.+..|+.+....++.
T Consensus 12 A~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 12 AANQRDTKKVKEILQ 26 (201)
T ss_dssp HHHTTCHHHHHHHHT
T ss_pred HHHhccHHHHHHHHH
Confidence 345556555555543
No 278
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=63.84 E-value=21 Score=29.58 Aligned_cols=85 Identities=11% Similarity=0.080 Sum_probs=44.2
Q ss_pred HHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhh--HHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCC---HhHHHHHHH
Q 010830 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKF--FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN---LIMYNAVIG 334 (499)
Q Consensus 260 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~li~ 334 (499)
.+...++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+-+ +.+.+.| ..++ ..-++ .+.
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~g--~~~~~~~~~g~t-~l~ 84 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVV----RLLVTAG--ASPMALDRHGQT-AAH 84 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHH----HHHHHTT--CCTTCCCTTSCC-HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHH----HHHHHcC--CCccccCCCCCC-HHH
Confidence 44555666888877777777666665554322 12345555666766543 3444455 2322 22222 233
Q ss_pred HHHcCCChHHHHHHHHH
Q 010830 335 LLCNNDDVDNVFRFFDQ 351 (499)
Q Consensus 335 ~~~~~~~~~~a~~~~~~ 351 (499)
..+..|+.+-+..+++.
T Consensus 85 ~A~~~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 85 LACEHRSPTCLRALLDS 101 (241)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHc
Confidence 34456666555544443
No 279
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=62.52 E-value=8.3 Score=32.10 Aligned_cols=54 Identities=7% Similarity=-0.052 Sum_probs=24.0
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCccCHHH--HHHHHHHHHhcccchHHHHHHHHHHHhhc
Q 010830 438 LVGLRNLGRLSDVRRFAEEMLNRRILIYEVT--MHKLKKAFYNESRSMRDIFDSLERRCKTS 497 (499)
Q Consensus 438 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~g~~a~~~~~~~~~~~~~~ 497 (499)
+...++.|+.+-+..+ .+.|..++... -...+....+.|+. ++.+.+++.....
T Consensus 181 L~~A~~~~~~~~v~~L----l~~g~~~~~~~~~g~t~l~~A~~~~~~--~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 181 LHWAVLAGNTTVISLL----LEAGANVDAQNIKGESALDLAKQRKNV--WMINHLQEARQAK 236 (240)
T ss_dssp HHHHHHHTCHHHHHHH----HHHTCCTTCBCTTSCBHHHHHHHTTCH--HHHHHHHHHC---
T ss_pred HHHHHHcCCHHHHHHH----HHcCCCCCCcCCCCCCHHHHHHHcCcH--HHHHHHHHhhhcc
Confidence 3334455665543333 33344433211 11234444566666 6666666665544
No 280
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=60.85 E-value=87 Score=27.50 Aligned_cols=60 Identities=13% Similarity=0.197 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCC--HHHHHHHHHHHhh
Q 010830 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ--VDEALKFLRVMKG 282 (499)
Q Consensus 219 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~ 282 (499)
....++.-|...|+.++|...++++... ...| .....+|......++ .+.+-.++..+..
T Consensus 5 ~~~~ii~EYf~~~d~~Ea~~~l~el~~p-~~~~---~~v~~~i~~aldr~~~erE~~s~LLs~L~~ 66 (307)
T 2zu6_B 5 TLTPIIQEYFEHGDTNEVAEMLRDLNLG-EMKS---GVPVLAVSLALEGKASHREMTSKLLSDLCG 66 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCG-GGGG---GHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCc-chHH---HHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 3467888899999999999999887543 3333 123334443333332 3344556666653
No 281
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=59.54 E-value=1.4e+02 Score=29.38 Aligned_cols=275 Identities=11% Similarity=0.090 Sum_probs=146.8
Q ss_pred CCchhHHHHHHhcCCCCCHHHH-HHHHH--hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 010830 63 ASSDDIESALACTGIIPTPDLV-HEVLQ--LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM 139 (499)
Q Consensus 63 ~~~~~l~~~l~~~~~~~~~~~~-~~~l~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 139 (499)
.+..++...+.+.+-.|-...+ ...+. ...+++...+.+|. . .+.+...--....+....|+..+|......+
T Consensus 53 ~~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~---~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~l 128 (618)
T 1qsa_A 53 QPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSP---E-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKEL 128 (618)
T ss_dssp CCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCC---S-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhcc---C-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 3556788888887766554333 33333 12455655555443 2 3556666666778888889988888888888
Q ss_pred HhCCCCCHHHHHHHHHHHHhcCChhH--HHHHHHHHHhCCCCcCHHHHHHHHHHH-----------HccCCchHHHHHHH
Q 010830 140 KEDGVLSLPTFASIFDSYCGAGKYDE--AVMSFDVMSMHGVEQDVVAVNSLLSAI-----------CRQENQTSRALEFL 206 (499)
Q Consensus 140 ~~~~~~~~~~~~~li~~~~~~g~~~~--A~~~~~~m~~~g~~p~~~~~~~ll~~~-----------~~~~~~~~~a~~~~ 206 (499)
-..+......+..++..+.+.|.+.. ..+=++.+...| +......++..+ .....+...+....
T Consensus 129 W~~~~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~---~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~ 205 (618)
T 1qsa_A 129 WLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAG---NTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFA 205 (618)
T ss_dssp HSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT---CHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHH
T ss_pred HhCCCCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHH
Confidence 87776666677888888776664433 222223333322 111111111111 00000011111111
Q ss_pred HHHhccCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchH-HhHHHHHHHHhcCCCHHHHHHHHHHHhh
Q 010830 207 NRVKKIVDPDGD---SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV-LAYETFLITLIRGKQVDEALKFLRVMKG 282 (499)
Q Consensus 207 ~~~~~~~~~~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~ 282 (499)
. ...++.. .+...+.-+.+. +.+.|...+....+...+.+... ..+..+...+...+...++...+.....
T Consensus 206 ~----~~~~~~~~~~~~~~~~~rlar~-d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~ 280 (618)
T 1qsa_A 206 R----TTGATDFTRQMAAVAFASVARQ-DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM 280 (618)
T ss_dssp H----HSCCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH
T ss_pred h----ccCCChhhHHHHHHHHHHHHhc-CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc
Confidence 1 1122222 122223333333 77888888888865433333111 1222333344444535566666666544
Q ss_pred CCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 010830 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354 (499)
Q Consensus 283 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 354 (499)
.. .+.....-.+....+.|+++.|...|+.|.... .....-.--+..++...|+.++|..+|..+..
T Consensus 281 ~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~---~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 281 RS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEA---KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp TC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG---GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccccc---cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 33 333334444555567789999998888876532 12344445566677788888888888887754
No 282
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=59.54 E-value=92 Score=27.38 Aligned_cols=105 Identities=10% Similarity=0.016 Sum_probs=48.8
Q ss_pred HHHHHHHHCCCCCCHHh--HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC---hhhHHHHHHHHhccCChhHHHHHHHH
Q 010830 347 RFFDQMVFHGAFPDSLT--YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT---PLNCATAITMLLDADEPEIAIEIWNY 421 (499)
Q Consensus 347 ~~~~~m~~~g~~p~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~ 421 (499)
.+.+.+.+.|..++... -.+.+...+..|..+.+..+++. .|..++ ..-.+.|..+ ++.|+.+ +.+.
T Consensus 220 ~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~~A-~~~g~~~----iv~~ 291 (337)
T 4g8k_A 220 AITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLA-VELKLKK----IAEL 291 (337)
T ss_dssp HHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHHHH-HHTTCHH----HHHH
T ss_pred HHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHh---cCCcccCcCCCCCCHHHHH-HHcCCHH----HHHH
Confidence 34445566666554321 11233444566776655444321 233222 2222334333 3456654 3444
Q ss_pred HHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCH
Q 010830 422 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYE 466 (499)
Q Consensus 422 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 466 (499)
+.+.|..+|..+ .| ...++.|+.+ +.+.+++.|-.||.
T Consensus 292 Ll~~GAd~n~~~--~L-~~A~~~~~~~----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 292 LCKRGASTDCGD--LV-MTARRNYDHS----LVKVLLSHGAKEDF 329 (337)
T ss_dssp HHTTSCSSTTCC--HH-HHHHHTTCHH----HHHHHHHTTCCC--
T ss_pred HHHCCCCCCCCC--HH-HHHHHcCCHH----HHHHHHHCcCCCCC
Confidence 556676666543 23 3334556543 44555666666653
No 283
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=59.02 E-value=9.5 Score=32.44 Aligned_cols=56 Identities=11% Similarity=-0.071 Sum_probs=29.5
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHh-------HHHHHHHHHH--cCCChHHHHHHHHHHH
Q 010830 296 LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI-------MYNAVIGLLC--NNDDVDNVFRFFDQMV 353 (499)
Q Consensus 296 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~~~li~~~~--~~~~~~~a~~~~~~m~ 353 (499)
+...++.|+.+....+++.+.+.+ ...+.. -++.|..+.. +.|+.+-+..+++.-.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~--~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHK--KRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHT--CCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcC--CCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 334456677777666666666655 222211 2333433332 5566666666665543
No 284
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=58.89 E-value=59 Score=27.23 Aligned_cols=31 Identities=19% Similarity=-0.051 Sum_probs=17.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 010830 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245 (499)
Q Consensus 215 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 245 (499)
.+.......+..+.+.|+-++|.++|-+...
T Consensus 89 ~~~~~~r~~v~~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 89 NEIVHLKSGTENMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHHHHH
Confidence 3344444455556666666666666655543
No 285
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=57.94 E-value=43 Score=24.90 Aligned_cols=62 Identities=5% Similarity=0.067 Sum_probs=31.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHhCC
Q 010830 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAG--KYDEAVMSFDVMSMHG 177 (499)
Q Consensus 116 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g 177 (499)
.+.++.-|...|+.++|.+.++++.........+...+..++-+.+ ..+.+..++..+...|
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~ 73 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSS 73 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCC
Confidence 3456666666777777777776664222222233334444444432 1344555555555444
No 286
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=57.64 E-value=99 Score=27.13 Aligned_cols=98 Identities=6% Similarity=0.080 Sum_probs=63.9
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCC--hHHHHHHHHHHHHcCCccCHHHHHHHHHHH
Q 010830 399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR--LSDVRRFAEEMLNRRILIYEVTMHKLKKAF 476 (499)
Q Consensus 399 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 476 (499)
...++.-|...|+.++|.+.++++.-..+. ...+...+..++-+.++ .+.+.+++..+.+.|+.+.......+-+.+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~vl 247 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIY 247 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 456788888899999999999988532221 22444455555555433 455778888888888776666555555544
Q ss_pred Hhcccc------hHHHHHHHHHHHhhc
Q 010830 477 YNESRS------MRDIFDSLERRCKTS 497 (499)
Q Consensus 477 ~~~g~~------a~~~~~~~~~~~~~~ 497 (499)
....+. |.+.+.+++.+....
T Consensus 248 ~~l~Dl~lDiP~A~~~la~~v~~ai~~ 274 (307)
T 2zu6_B 248 NEIPDINLDVPHSYSVLERFVEECFQA 274 (307)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred HhccHhhcccccHHHHHHHHHHHHHHC
Confidence 444433 777777777776554
No 287
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=56.99 E-value=40 Score=22.40 Aligned_cols=59 Identities=10% Similarity=0.076 Sum_probs=33.3
Q ss_pred HHHCCCCChHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhccc
Q 010830 422 ILENGILPLEASANELLVGLRNLG-RLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 481 (499)
Q Consensus 422 m~~~~~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 481 (499)
+.+.|+..+..- ..++..+...+ ..-.+.++.+.+.+.+...+..|....++.+.+.|-
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 445565555433 23444444443 455566666666666555566666666666666653
No 288
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=56.51 E-value=89 Score=26.28 Aligned_cols=28 Identities=14% Similarity=0.342 Sum_probs=16.8
Q ss_pred hHHhHHHHHHHHhcCCCHHHHHHHHHHH
Q 010830 253 HVLAYETFLITLIRGKQVDEALKFLRVM 280 (499)
Q Consensus 253 ~~~~~~~li~~~~~~~~~~~a~~~~~~m 280 (499)
...++.-++..+.+...+-+++..|+.+
T Consensus 228 G~Is~~Ef~~~~~~~~~l~~~l~~~d~~ 255 (256)
T 2jul_A 228 GVVTIDEFLETCQKDENIMNSMQLFENV 255 (256)
T ss_dssp CSBCHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred CcEeHHHHHHHHHhCHHHHHHHHhhccc
Confidence 3345666666666666666666666543
No 289
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=56.32 E-value=75 Score=25.98 Aligned_cols=22 Identities=0% Similarity=0.069 Sum_probs=14.5
Q ss_pred HHHHhCCChHHHHHHHHHHHHc
Q 010830 439 VGLRNLGRLSDVRRFAEEMLNR 460 (499)
Q Consensus 439 ~~~~~~g~~~~a~~~~~~m~~~ 460 (499)
..|.+.|.+++|.+++++....
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHhcchHHHHHHHHHHhcC
Confidence 4466677777777777776644
No 290
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=56.21 E-value=64 Score=24.49 Aligned_cols=66 Identities=12% Similarity=-0.065 Sum_probs=29.4
Q ss_pred CCHhhHHHHHHHHHHcCC---HhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 010830 287 PTLKFFSNALDILVKLND---STHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF 354 (499)
Q Consensus 287 p~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 354 (499)
|+..+--...-++.++.+ ..+++.+++.+.+.+ -.-.....--|.-++.+.|++++|.+..+.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~--~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC--CSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--ccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 333333333444444433 234445555555433 111222333344455555555555555555555
No 291
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=53.76 E-value=61 Score=25.74 Aligned_cols=64 Identities=11% Similarity=0.119 Sum_probs=31.4
Q ss_pred HHHHHcCCChHHHHHHHHHHHHCCCCCCHHh---HHHHHHHHHh-cCCHhHHHHHHHHHHHCCCCCCh
Q 010830 333 IGLLCNNDDVDNVFRFFDQMVFHGAFPDSLT---YNMIFECLIK-NKRVHEVEKFFHEMIKNEWQPTP 396 (499)
Q Consensus 333 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~p~~ 396 (499)
+...+..|+.+.-.++.+.+.+.|..++... ++.|..++.. ..+.....++.+.+++.|..++.
T Consensus 42 Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~ 109 (186)
T 3t8k_A 42 LYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITA 109 (186)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSS
T ss_pred HHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCc
Confidence 3334445555555566666666666555421 2223222222 22334445566666666655543
No 292
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=51.07 E-value=1.3e+02 Score=26.67 Aligned_cols=70 Identities=16% Similarity=0.127 Sum_probs=34.2
Q ss_pred HHHHhcCCCCCCCHhHHHHHHHHHHcCCChH-HHHHHHHHHHH----CC--CCCCHHhHHHHHHHHHhcCCHhHHHHHH
Q 010830 313 DIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD-NVFRFFDQMVF----HG--AFPDSLTYNMIFECLIKNKRVHEVEKFF 384 (499)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~-~a~~~~~~m~~----~g--~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 384 (499)
+-..+.+ +++|......++..+.....-+ .=..+.+++.+ .| ..-|......+...|.+.+++.+|+..|
T Consensus 83 evy~~~~--~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 83 DTFRQAG--QRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHHHT--CCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHcC--CCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 3333444 5555555555555555443211 11223333322 12 2234455556666777777777776655
No 293
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=50.98 E-value=35 Score=26.29 Aligned_cols=62 Identities=5% Similarity=0.067 Sum_probs=31.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHhCC
Q 010830 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAG--KYDEAVMSFDVMSMHG 177 (499)
Q Consensus 116 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g 177 (499)
.+.++.-|...|+.++|.+.++++.........+...+..++-+.+ ..+.+..++..+...|
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~ 75 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSS 75 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCC
Confidence 4456666666777777777776664322222233334444444322 1344555555555444
No 294
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=50.92 E-value=97 Score=25.03 Aligned_cols=60 Identities=13% Similarity=0.066 Sum_probs=36.3
Q ss_pred HHHHHHhc---CCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCC-----HhHHHHHHHHHHhcC
Q 010830 259 TFLITLIR---GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND-----STHAVQLWDIMVGIG 319 (499)
Q Consensus 259 ~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~-----~~~a~~~~~~~~~~~ 319 (499)
-+|+++.| ..+.+.|+-++-+|.+.| .|....-..++-+.-..|. +..|...++.....|
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG 83 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLG 83 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhC
Confidence 34455443 478888888888888888 6654444455555544443 334555555556666
No 295
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=50.77 E-value=30 Score=28.47 Aligned_cols=15 Identities=0% Similarity=-0.183 Sum_probs=7.3
Q ss_pred hccCChhHHHHHHHH
Q 010830 407 LDADEPEIAIEIWNY 421 (499)
Q Consensus 407 ~~~g~~~~a~~~~~~ 421 (499)
.+.|+.+-+..+++.
T Consensus 218 ~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 218 KQRKNVWMINHLQEA 232 (240)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHh
Confidence 444555554444443
No 296
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=50.74 E-value=30 Score=28.58 Aligned_cols=18 Identities=11% Similarity=0.075 Sum_probs=9.1
Q ss_pred HhcCCHhHHHHHHHHHHH
Q 010830 372 IKNKRVHEVEKFFHEMIK 389 (499)
Q Consensus 372 ~~~g~~~~a~~~~~~~~~ 389 (499)
+..|+...+.++.+.+.+
T Consensus 218 ~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 218 SLNSQVWSALQMSKALQD 235 (237)
T ss_dssp CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 344555555555555443
No 297
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=49.01 E-value=53 Score=22.88 Aligned_cols=60 Identities=12% Similarity=0.114 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHH-----HcCCccCHHHHHHHHH
Q 010830 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML-----NRRILIYEVTMHKLKK 474 (499)
Q Consensus 413 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~-----~~~~~p~~~~~~~ll~ 474 (499)
-.+.++.+++...|+.|+..+..-++..|...+- + +.++.++.. ..|..|+..+++.+=+
T Consensus 26 Vsae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~FEh 90 (101)
T 2keb_A 26 ASAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSFEH 90 (101)
T ss_dssp CCHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHHHH
T ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 3577888888888999999888888888777664 2 555444433 3477787777766543
No 298
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=48.49 E-value=43 Score=29.95 Aligned_cols=25 Identities=12% Similarity=0.240 Sum_probs=16.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHH
Q 010830 329 YNAVIGLLCNNDDVDNVFRFFDQMV 353 (499)
Q Consensus 329 ~~~li~~~~~~~~~~~a~~~~~~m~ 353 (499)
...++.-|...|+.++|.+.++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4556666777777777777776664
No 299
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=48.38 E-value=1e+02 Score=28.35 Aligned_cols=15 Identities=20% Similarity=0.494 Sum_probs=8.3
Q ss_pred HccCCchHHHHHHHHH
Q 010830 193 CRQENQTSRALEFLNR 208 (499)
Q Consensus 193 ~~~~~~~~~a~~~~~~ 208 (499)
+.. |+.+.+..+++.
T Consensus 121 ~~~-g~~~~v~~Ll~~ 135 (437)
T 1n11_A 121 ARE-GHVETVLALLEK 135 (437)
T ss_dssp HHH-TCHHHHHHHHHT
T ss_pred HHc-CCHHHHHHHHhC
Confidence 344 666666655543
No 300
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=48.18 E-value=76 Score=26.00 Aligned_cols=21 Identities=10% Similarity=0.088 Sum_probs=9.4
Q ss_pred HHhcCChhHHHHHHHHHHhCC
Q 010830 157 YCGAGKYDEAVMSFDVMSMHG 177 (499)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~~~g 177 (499)
.+..|+.+.+..+++.+.+.|
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhcC
Confidence 344455554444444443333
No 301
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=47.82 E-value=96 Score=25.26 Aligned_cols=20 Identities=5% Similarity=0.120 Sum_probs=8.9
Q ss_pred HhcCCHhHHHHHHHHHHHCC
Q 010830 372 IKNKRVHEVEKFFHEMIKNE 391 (499)
Q Consensus 372 ~~~g~~~~a~~~~~~~~~~~ 391 (499)
+..|+.+-+..+++.+.+.|
T Consensus 162 ~~~~~~~~~~~i~~~Ll~~g 181 (232)
T 2rfa_A 162 ILQPNKTFACQMYNLLLSYD 181 (232)
T ss_dssp HTCSCHHHHHHHHHHHHHTT
T ss_pred HHcCChHHHHHHHHHHHhcC
Confidence 34444444444444444443
No 302
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=47.65 E-value=33 Score=32.68 Aligned_cols=68 Identities=13% Similarity=0.026 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CcCH--HHHHHHH-HHHHccCCchHHHHHHHHHHhccCCC
Q 010830 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGV-EQDV--VAVNSLL-SAICRQENQTSRALEFLNRVKKIVDP 215 (499)
Q Consensus 147 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~~~~~ll-~~~~~~~~~~~~a~~~~~~~~~~~~~ 215 (499)
...+|.+++.|...+.++.|..+..+..---. .++. ..|...+ ..+.-. +++.+|.+.+...-+..++
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q-~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQ-LDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTSSCSC
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCc
Confidence 45788999999999999999999998852100 1111 2333222 233444 8899999988887554333
No 303
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=47.38 E-value=1.1e+02 Score=24.57 Aligned_cols=18 Identities=33% Similarity=0.270 Sum_probs=8.5
Q ss_pred CCHHHHHHHHHHHHhCCC
Q 010830 111 LSPYAWNLMVDVLGKNGR 128 (499)
Q Consensus 111 ~~~~~~~~li~~~~~~~~ 128 (499)
+|...-...+..+++.|.
T Consensus 31 ~~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGD 48 (211)
T ss_dssp SSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCC
Confidence 344444444455555544
No 304
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=47.25 E-value=90 Score=23.61 Aligned_cols=58 Identities=12% Similarity=0.033 Sum_probs=29.7
Q ss_pred HHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcc
Q 010830 422 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 480 (499)
Q Consensus 422 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 480 (499)
+.+.|++++..=. .++..+...+..-.|.++++.+.+.+...+..|...-|+.+...|
T Consensus 13 l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 4445554443222 233344444455556666666665555555555555555555555
No 305
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=47.11 E-value=93 Score=23.72 Aligned_cols=58 Identities=12% Similarity=0.116 Sum_probs=29.1
Q ss_pred HHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcc
Q 010830 422 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 480 (499)
Q Consensus 422 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 480 (499)
+.+.|+.++..= ..++..+...+..-.|.++++.+.+.+...+..|.-.-|+.+...|
T Consensus 18 l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 18 IKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 444555544322 2233444444455566666666665555555555555555555555
No 306
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=46.76 E-value=89 Score=26.79 Aligned_cols=15 Identities=7% Similarity=0.151 Sum_probs=7.1
Q ss_pred HHHHHHHCCCCCChh
Q 010830 383 FFHEMIKNEWQPTPL 397 (499)
Q Consensus 383 ~~~~~~~~~~~p~~~ 397 (499)
+.+.+++.|..++..
T Consensus 210 ~v~~Ll~~gad~~~~ 224 (285)
T 3kea_A 210 MLQALFKYDINIYSA 224 (285)
T ss_dssp HHHHHTTSCBCSTTT
T ss_pred HHHHHHHcCCCCCCC
Confidence 344444555555443
No 307
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=46.68 E-value=25 Score=30.44 Aligned_cols=10 Identities=40% Similarity=0.375 Sum_probs=4.1
Q ss_pred HhcCCHhHHH
Q 010830 372 IKNKRVHEVE 381 (499)
Q Consensus 372 ~~~g~~~~a~ 381 (499)
+..|..+-+.
T Consensus 169 ~~~g~~~~v~ 178 (285)
T 3kea_A 169 IKNGHVDMMI 178 (285)
T ss_dssp HHTTCHHHHH
T ss_pred HHcChHHHHH
Confidence 3444444333
No 308
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=46.19 E-value=1.1e+02 Score=24.28 Aligned_cols=15 Identities=33% Similarity=0.370 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHhCC
Q 010830 113 PYAWNLMVDVLGKNG 127 (499)
Q Consensus 113 ~~~~~~li~~~~~~~ 127 (499)
...-...+..+++.|
T Consensus 28 ~~vr~~A~~~L~~~~ 42 (201)
T 3ltj_A 28 YYVRRAAAYALGKIG 42 (201)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcC
Confidence 333333333333333
No 309
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=45.02 E-value=99 Score=23.45 Aligned_cols=67 Identities=15% Similarity=0.204 Sum_probs=36.1
Q ss_pred CChhhHHHHHHHHhccCC---hhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 010830 394 PTPLNCATAITMLLDADE---PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 460 (499)
Q Consensus 394 p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 460 (499)
|+..+--.+..++.+..+ ..+++.+++.+.+.+..-.....-.|.-++.+.|++++|.++.+.+++.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 444444444555555443 3355666666655332223333334455666777777777777776654
No 310
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=44.71 E-value=1e+02 Score=23.62 Aligned_cols=51 Identities=12% Similarity=0.032 Sum_probs=29.8
Q ss_pred HHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCC
Q 010830 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287 (499)
Q Consensus 236 a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 287 (499)
+.++|..|..+ |+--.-+.-|......+...|++++|.++|+.-.+.+-.|
T Consensus 84 p~~if~~L~~~-~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNH-GIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTT-TTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 55666666554 5544445556666666666666666666666655555555
No 311
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=44.60 E-value=1.1e+02 Score=23.85 Aligned_cols=50 Identities=12% Similarity=0.105 Sum_probs=37.7
Q ss_pred HHHHHHHHHhCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC
Q 010830 132 MWNAVRVMKEDGV--LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD 181 (499)
Q Consensus 132 a~~~~~~m~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 181 (499)
+.++|..|..+++ --...|......+-..|++.+|.++|+.-++.+-.|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 6677888888774 4456777777778888888888888888777765663
No 312
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=43.93 E-value=48 Score=30.70 Aligned_cols=49 Identities=16% Similarity=0.064 Sum_probs=21.8
Q ss_pred HHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010830 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242 (499)
Q Consensus 192 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 242 (499)
.+.. |+.+-+.-+++.-..-...+.... +.+...++.|+.+.+..+++.
T Consensus 87 A~~~-g~~~~v~~Ll~~ga~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~ 135 (437)
T 1n11_A 87 AARI-GHTNMVKLLLENNANPNLATTAGH-TPLHIAAREGHVETVLALLEK 135 (437)
T ss_dssp HHHH-TCHHHHHHHHHHTCCTTCCCTTCC-CHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHC-CCHHHHHHHHhCCCCCCCCCCCCC-cHHHHHHHcCCHHHHHHHHhC
Confidence 3444 666655555543211111111111 233444566777666555543
No 313
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=43.67 E-value=39 Score=26.95 Aligned_cols=13 Identities=31% Similarity=0.457 Sum_probs=5.5
Q ss_pred HHHHHHHHHCCCC
Q 010830 416 IEIWNYILENGIL 428 (499)
Q Consensus 416 ~~~~~~m~~~~~~ 428 (499)
.++.+.+.+.|..
T Consensus 158 ~~~v~~Ll~~ga~ 170 (201)
T 3hra_A 158 QDIVKLLMENGAD 170 (201)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHCCCC
Confidence 3344444444443
No 314
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=42.34 E-value=1e+02 Score=28.82 Aligned_cols=94 Identities=12% Similarity=0.095 Sum_probs=44.9
Q ss_pred CCCCCHHHHHHHHH--hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHH
Q 010830 76 GIIPTPDLVHEVLQ--LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASI 153 (499)
Q Consensus 76 ~~~~~~~~~~~~l~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~l 153 (499)
|++-..+++..-.. ...|++++|.++-....+|.-.+..+.+.+-..=...|+..-.+..|..+.+.|..+..-=-.+
T Consensus 356 ~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g~Ln~~ESlEl 435 (494)
T 1bpo_A 356 NLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQGQLNKYESLEL 435 (494)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccCccchHHhhHH
Confidence 33333444433333 2345555555555555555555555555555544444555555555555555554443333333
Q ss_pred HHHHHhcCChhHHHHH
Q 010830 154 FDSYCGAGKYDEAVMS 169 (499)
Q Consensus 154 i~~~~~~g~~~~A~~~ 169 (499)
++.-...|+.+-..++
T Consensus 436 ~r~vL~q~r~~llekW 451 (494)
T 1bpo_A 436 CRPVLQQGRKQLLEKW 451 (494)
T ss_dssp HHHHHHTTCHHHHHHH
T ss_pred hHHHHhccHHHHHHHH
Confidence 4444444444433333
No 315
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=42.17 E-value=2.6e+02 Score=27.44 Aligned_cols=331 Identities=8% Similarity=0.043 Sum_probs=157.4
Q ss_pred CchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010830 94 SPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173 (499)
Q Consensus 94 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 173 (499)
.+.+...+.+.- .+.+.....-+..+..+++.+++...+..+.. .+.+...-.....+....|+..+|......+
T Consensus 54 ~~~ev~~Fl~~~-~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~l 128 (618)
T 1qsa_A 54 PAVTVTNFVRAN-PTLPPARTLQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKEL 128 (618)
T ss_dssp CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHC-CCChhHHHHHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 445555555432 12333344556667778888888877765443 2345666666777888889888888877777
Q ss_pred HhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHh----c-----------cCCCCHHH-HHHHHHHHHhcCCHHHHH
Q 010830 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK----K-----------IVDPDGDS-FAILLEGWEKEGNVEEAN 237 (499)
Q Consensus 174 ~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~----~-----------~~~~~~~~-~~~ll~~~~~~g~~~~a~ 237 (499)
-..| ......+..++..+.+. |...... +..+|. . .+.++... ...++..+.+- ..+.
T Consensus 129 W~~~-~~~p~~c~~l~~~~~~~-g~lt~~~-~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p---~~~~ 202 (618)
T 1qsa_A 129 WLTG-KSQPNACDKLFSVWRAS-GKQDPLA-YLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNP---NTVL 202 (618)
T ss_dssp HSCS-SCCCTHHHHHHHHHHHT-TCSCHHH-HHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCG---GGHH
T ss_pred HhCC-CCCcHHHHHHHHHHHHC-CCCCHHH-HHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhCh---HhHH
Confidence 6555 44455667777777755 4332211 111111 0 11111111 11111111111 1111
Q ss_pred HHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHH----HHcCCHhHHHHHHH
Q 010830 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL----VKLNDSTHAVQLWD 313 (499)
Q Consensus 238 ~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~----~~~~~~~~a~~~~~ 313 (499)
...... +..+.+...+...+.-+.+ .+.+.|...+....+.. ..+......+-... ...+...++...+.
T Consensus 203 ~~~~~~----~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~ 276 (618)
T 1qsa_A 203 TFARTT----GATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRD 276 (618)
T ss_dssp HHHHHS----CCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHH
T ss_pred HHHhcc----CCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHH
Confidence 111110 0000011111122222333 36677888877765433 12322222222222 22332445555666
Q ss_pred HHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 010830 314 IMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393 (499)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 393 (499)
...... .+.....-.+....+.|+++.|...|+.|...... .....--+..++...|+.++|..+|+.+.+.
T Consensus 277 ~~~~~~----~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~--- 348 (618)
T 1qsa_A 277 DAIMRS----QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQQ--- 348 (618)
T ss_dssp HHHHTC----CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---
T ss_pred hccccC----CChHHHHHHHHHHHHCCCHHHHHHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---
Confidence 554432 23333334444445668888888888777553111 2222233445666778888888888887642
Q ss_pred CChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCC---hH---HHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 010830 394 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILP---LE---ASANELLVGLRNLGRLSDVRRFAEEMLNR 460 (499)
Q Consensus 394 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~---~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 460 (499)
. ..|..+... +.|..-.. .. ..+.+ .. ..--.-+..+...|....|...+..+.+.
T Consensus 349 -~-~fYg~lAa~--~Lg~~~~~-~~------~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~ 410 (618)
T 1qsa_A 349 -R-GFYPMVAAQ--RIGEEYEL-KI------DKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS 410 (618)
T ss_dssp -C-SHHHHHHHH--HTTCCCCC-CC------CCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred -C-ChHHHHHHH--HcCCCCCC-CC------CCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc
Confidence 1 234433221 22211000 00 00000 00 01112244577789999998888877654
No 316
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=42.02 E-value=1.3e+02 Score=24.03 Aligned_cols=79 Identities=13% Similarity=0.030 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHH
Q 010830 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225 (499)
Q Consensus 146 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~ 225 (499)
+...-...+..+.+.|..+. ...+..+.. .+|..+-...+.++... ++.+....+.+.+. .++..+-...+.
T Consensus 32 ~~~vR~~A~~~L~~~~~~~~-~~~L~~~l~---~~~~~vr~~a~~aL~~~-~~~~~~~~L~~~l~---~~~~~vr~~a~~ 103 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDERA-VEPLIKALK---DEDAWVRRAAADALGQI-GDERAVEPLIKALK---DEDGWVRQSAAV 103 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSCHHHHHHHHHHHHHH-CCGGGHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccH-HHHHHHHHc---CCCHHHHHHHHHHHHhh-CCHHHHHHHHHHHc---CCCHHHHHHHHH
Confidence 44444444555555554322 222222332 34444444445555554 43322222222222 244444444455
Q ss_pred HHHhcCC
Q 010830 226 GWEKEGN 232 (499)
Q Consensus 226 ~~~~~g~ 232 (499)
++.+.|+
T Consensus 104 aL~~~~~ 110 (211)
T 3ltm_A 104 ALGQIGD 110 (211)
T ss_dssp HHHHHCC
T ss_pred HHHHhCc
Confidence 5555554
No 317
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=41.97 E-value=95 Score=23.13 Aligned_cols=59 Identities=19% Similarity=0.148 Sum_probs=25.0
Q ss_pred HHHCCCCCChhhHHHHHHHHhccC-ChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCC
Q 010830 387 MIKNEWQPTPLNCATAITMLLDAD-EPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 446 (499)
Q Consensus 387 ~~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 446 (499)
+.+.|++.+.. -..++..+...+ ..-.|.++++.+.+.+...+..|..--++.+...|-
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 33445444432 223333444333 444555555555554433344433333444444443
No 318
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=41.83 E-value=1.4e+02 Score=24.31 Aligned_cols=63 Identities=16% Similarity=0.144 Sum_probs=38.4
Q ss_pred HHHHHHHHhc---CCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCC-----HhHHHHHHHHHHhcC
Q 010830 257 YETFLITLIR---GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND-----STHAVQLWDIMVGIG 319 (499)
Q Consensus 257 ~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~-----~~~a~~~~~~~~~~~ 319 (499)
..-+|+++.| ..+.+.|+-++-+|.+.|-.|....-..++-+.-..|. +..|...++.....|
T Consensus 35 HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG 105 (213)
T 3ctd_A 35 HFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVG 105 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhC
Confidence 3345555544 37888888888888888866654444455555544442 344555566666666
No 319
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=41.65 E-value=2e+02 Score=25.91 Aligned_cols=64 Identities=9% Similarity=0.131 Sum_probs=36.2
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCC--hHHHHHHHHHHHHCCCC
Q 010830 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD--VDNVFRFFDQMVFHGAF 358 (499)
Q Consensus 292 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~ 358 (499)
...++.-|...|+.++|.+.++++..-. + -...+...+..++-+.++ .+...+++..+...|+-
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~--f-hhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gll 285 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPH--F-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 285 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTT--C-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCc--c-hHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCC
Confidence 4566777777777777777777775321 1 123344455555544332 34566666666665443
No 320
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=40.48 E-value=61 Score=26.60 Aligned_cols=19 Identities=0% Similarity=0.006 Sum_probs=10.7
Q ss_pred HHhCCChHHHHHHHHHHHH
Q 010830 441 LRNLGRLSDVRRFAEEMLN 459 (499)
Q Consensus 441 ~~~~g~~~~a~~~~~~m~~ 459 (499)
.+..|+...+.++.+.+.+
T Consensus 217 A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 217 ASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp SCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 3455566666666665543
No 321
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=40.36 E-value=1.9e+02 Score=25.30 Aligned_cols=106 Identities=9% Similarity=-0.008 Sum_probs=51.6
Q ss_pred HHHHHHHHHhcCCCCCCC---HhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCH---HhHHHHHHHHHhcCCHhHHH
Q 010830 308 AVQLWDIMVGIGFNLMPN---LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS---LTYNMIFECLIKNKRVHEVE 381 (499)
Q Consensus 308 a~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~g~~~~a~ 381 (499)
...+.+.+++.| ..++ ..-.+. +...+..|..+.+..+++. .|..++. .-.+.|..+ ++.|+.+
T Consensus 218 ~~~i~~lLl~~g--ad~n~~d~~g~t~-L~~a~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~~A-~~~g~~~--- 287 (337)
T 4g8k_A 218 VEAITHLLLDHG--ADVNVRGERGKTP-LILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLA-VELKLKK--- 287 (337)
T ss_dssp HHHHHHHHHHTT--CCTTCCCGGGCCH-HHHHHHTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHHHH-HHTTCHH---
T ss_pred HHHHHHHHHHCC--CCCCCcCCCCCCH-HHHHHHhhhhHHHHHHHHh---cCCcccCcCCCCCCHHHHH-HHcCCHH---
Confidence 334555566666 3332 222223 3344566776655544321 2333332 222333333 4566654
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChH
Q 010830 382 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 431 (499)
Q Consensus 382 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 431 (499)
+.+.+++.|..++..+ . +...++.|+.+ +.+.+++.|-.||.
T Consensus 288 -iv~~Ll~~GAd~n~~~--~-L~~A~~~~~~~----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 288 -IAELLCKRGASTDCGD--L-VMTARRNYDHS----LVKVLLSHGAKEDF 329 (337)
T ss_dssp -HHHHHHTTSCSSTTCC--H-HHHHHHTTCHH----HHHHHHHTTCCC--
T ss_pred -HHHHHHHCCCCCCCCC--H-HHHHHHcCCHH----HHHHHHHCcCCCCC
Confidence 4555667787777654 3 33334556654 45556677766654
No 322
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=40.08 E-value=1.4e+02 Score=23.67 Aligned_cols=11 Identities=36% Similarity=0.582 Sum_probs=4.1
Q ss_pred HHHHHHHHhCC
Q 010830 117 NLMVDVLGKNG 127 (499)
Q Consensus 117 ~~li~~~~~~~ 127 (499)
...+.++++.|
T Consensus 63 ~~a~~~L~~~~ 73 (201)
T 3ltj_A 63 RAAADALGQIG 73 (201)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhhC
Confidence 33333333333
No 323
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=39.26 E-value=26 Score=21.85 Aligned_cols=29 Identities=21% Similarity=0.299 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhHccCCCCchHHhHHHHHHHH
Q 010830 234 EEANKTFGEMVERFEWNPEHVLAYETFLITL 264 (499)
Q Consensus 234 ~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~ 264 (499)
++|++.|.+|.+..++.| +. +|...|+..
T Consensus 3 eEae~aF~~lL~~~~V~s-~w-sweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDS-TW-SFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCS-SC-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCC-CC-cHHHHHHHh
Confidence 456666666666555555 32 566666555
No 324
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=39.19 E-value=1.5e+02 Score=23.88 Aligned_cols=60 Identities=17% Similarity=0.187 Sum_probs=34.8
Q ss_pred HHHHHhc---CCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCC-----HhHHHHHHHHHHhcC
Q 010830 260 FLITLIR---GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND-----STHAVQLWDIMVGIG 319 (499)
Q Consensus 260 li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~-----~~~a~~~~~~~~~~~ 319 (499)
+|+++.| ..+.+.|+-++-+|.+.|-.|....-..++-+.-..|. +..|...++.....|
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG 77 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVG 77 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHC
Confidence 4455444 47888888888888888866654444444444444332 234444445555544
No 325
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=38.97 E-value=23 Score=29.89 Aligned_cols=24 Identities=13% Similarity=-0.046 Sum_probs=13.2
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhcC
Q 010830 296 LDILVKLNDSTHAVQLWDIMVGIG 319 (499)
Q Consensus 296 i~~~~~~~~~~~a~~~~~~~~~~~ 319 (499)
+...+..|+.+.+..+++.+.+.|
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g 29 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNS 29 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC
Confidence 334445566666555665555555
No 326
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=38.87 E-value=1.7e+02 Score=24.23 Aligned_cols=53 Identities=15% Similarity=0.149 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCC
Q 010830 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287 (499)
Q Consensus 234 ~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 287 (499)
+++.++|..|..+ |+--.-..-|......+...|++++|.++|+.-.+.+-.|
T Consensus 131 ~~p~~if~~L~~~-~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHH-HIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHT-TCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHC-CcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4566777777665 6655556667777777777777777777777766666555
No 327
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=37.43 E-value=1.1e+02 Score=23.42 Aligned_cols=59 Identities=14% Similarity=0.116 Sum_probs=26.7
Q ss_pred HHHCCCCCChhhHHHHHHHHhccC-ChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCC
Q 010830 387 MIKNEWQPTPLNCATAITMLLDAD-EPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 446 (499)
Q Consensus 387 ~~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 446 (499)
+.+.|++++..= ..++..+...+ ..-.|.++++.+.+.+...+..|..--++.+...|-
T Consensus 8 l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 8 LKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 444455544322 23333443333 444555666655554444444443334444444443
No 328
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=37.19 E-value=1.8e+02 Score=24.07 Aligned_cols=53 Identities=8% Similarity=0.089 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHCCCCCh-HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccC
Q 010830 413 EIAIEIWNYILENGILPL-EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 465 (499)
Q Consensus 413 ~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~ 465 (499)
+....+|..|...||.-. ...|......+...|++++|.++|+.-++.+-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 456677777777666433 34566666667777888888888877777766664
No 329
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=36.83 E-value=85 Score=23.77 Aligned_cols=34 Identities=9% Similarity=-0.090 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcc
Q 010830 447 LSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 480 (499)
Q Consensus 447 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 480 (499)
.-.|.++++.+.+.+...+..|.-.-|+.+...|
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 4455555555555444445555444445554444
No 330
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=36.37 E-value=85 Score=24.38 Aligned_cols=70 Identities=11% Similarity=0.052 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC--CCCCCHhhHHHHHHHHHHcCCH
Q 010830 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE--NCFPTLKFFSNALDILVKLNDS 305 (499)
Q Consensus 234 ~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~~~~ 305 (499)
+.+.+-+.+..+..|+.. +. --..++..+...+..-.|.++++.+.+. +...+..|..--++.+.+.|-+
T Consensus 14 ~~~~~~~~~~L~~~g~r~-T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKY-TK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCC-CH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCC-CH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 334444444333346655 33 3445566666666666677777777665 5445555555555566655543
No 331
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=36.18 E-value=95 Score=24.13 Aligned_cols=53 Identities=11% Similarity=0.100 Sum_probs=34.6
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCC--ChhhHHHHHH-HH-----hccCChhHHHHHHHHHHH
Q 010830 372 IKNKRVHEVEKFFHEMIKNEWQP--TPLNCATAIT-ML-----LDADEPEIAIEIWNYILE 424 (499)
Q Consensus 372 ~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~li~-~~-----~~~g~~~~a~~~~~~m~~ 424 (499)
...|++-+|.++++..-.....+ ....|..||+ .. .+.|+...|..++.+...
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34588888888888877664444 4455666666 21 245777777777777654
No 332
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=35.84 E-value=49 Score=21.05 Aligned_cols=43 Identities=16% Similarity=0.237 Sum_probs=21.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 010830 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYC 158 (499)
Q Consensus 116 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~ 158 (499)
++-++..++...-.+.++..+++..+.|..+..+|---++..+
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g~I~l~~ylK~vR~La 47 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRGTIPLDTFVKQGRELA 47 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3444444444444555555555555555555544444444433
No 333
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=35.57 E-value=38 Score=28.50 Aligned_cols=21 Identities=5% Similarity=0.017 Sum_probs=12.2
Q ss_pred HHHHhcCCHHHHHHHHHHHhH
Q 010830 225 EGWEKEGNVEEANKTFGEMVE 245 (499)
Q Consensus 225 ~~~~~~g~~~~a~~~~~~~~~ 245 (499)
...++.|+.+....+++.+.+
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~ 30 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLT 30 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 344556666666666665544
No 334
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=35.14 E-value=1.6e+02 Score=22.95 Aligned_cols=52 Identities=6% Similarity=-0.011 Sum_probs=36.0
Q ss_pred HHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCC
Q 010830 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288 (499)
Q Consensus 236 a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 288 (499)
+.++|..|..+ |+--.-+.-|......+-..|++.+|.++|+.-.+.+..|-
T Consensus 79 p~~if~~L~~~-~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQ-GIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHT-TSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHC-CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 56677777665 66555566677777777777777777777777777666663
No 335
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=34.85 E-value=1.1e+02 Score=21.26 Aligned_cols=62 Identities=15% Similarity=0.080 Sum_probs=30.7
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHH
Q 010830 135 AVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRA 202 (499)
Q Consensus 135 ~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a 202 (499)
+++.+.+.++.+..-...+-. .....+.+.|.++++.+...| ..+|..++.++... |+...|
T Consensus 26 vld~L~~~~vlt~~~~e~I~~-~~~~t~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et-~~~~La 87 (97)
T 3ygs_P 26 LWDVLLSRELFRPHMIEDIQR-AGSGSRRDQARQLIIDLETRG----SQALPLFISCLEDT-GQDMLA 87 (97)
T ss_dssp THHHHHHTTSSCHHHHHHHHT-STTCCHHHHHHHHHHHHTTSC----TTHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHh-ccCCChHHHHHHHHHHHHHcC----hHHHHHHHHHHHHc-CcHHHH
Confidence 555555665555444433322 001135666666666666443 34555666665544 444333
No 336
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=34.39 E-value=1.4e+02 Score=23.08 Aligned_cols=56 Identities=13% Similarity=-0.007 Sum_probs=24.7
Q ss_pred CCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHC--CCCChHHHHHHHHHHHHhCCCh
Q 010830 391 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN--GILPLEASANELLVGLRNLGRL 447 (499)
Q Consensus 391 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~g~~ 447 (499)
|++.+.. -..++..+...+..-.|.++++.+.+. +...+..|..--++.+...|-.
T Consensus 28 g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 28 GLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp TCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred CCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 5544332 233444444444455555555555544 3333333333334444444433
No 337
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=33.24 E-value=64 Score=24.26 Aligned_cols=40 Identities=5% Similarity=0.128 Sum_probs=17.4
Q ss_pred HHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcc
Q 010830 441 LRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 480 (499)
Q Consensus 441 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 480 (499)
+...++.-.|.++++.+.+.+...+..|.-.-|+.+...|
T Consensus 23 L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 23 LQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3333334444444444444444444444444444444443
No 338
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=33.00 E-value=71 Score=23.65 Aligned_cols=37 Identities=14% Similarity=0.150 Sum_probs=16.3
Q ss_pred CCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcc
Q 010830 444 LGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 480 (499)
Q Consensus 444 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 480 (499)
.+..-.|.++++.+.+.+...+..|.-..|+.+...|
T Consensus 23 ~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 23 LDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp CCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred CCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3334444444444444443344444444444444443
No 339
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=32.89 E-value=1.3e+02 Score=23.40 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=21.6
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010830 363 TYNMIFECLIKNKRVHEVEKFFHEMI 388 (499)
Q Consensus 363 ~~~~ll~~~~~~g~~~~a~~~~~~~~ 388 (499)
....++.-|...|+.++|...++++.
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 35677888889999999999999875
No 340
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=32.82 E-value=1.3e+02 Score=21.05 Aligned_cols=32 Identities=3% Similarity=-0.028 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHhccC
Q 010830 379 EVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 410 (499)
Q Consensus 379 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 410 (499)
.+.++.++....|+.|+..+..-++..|...+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 35666667766788888777777777766544
No 341
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=32.34 E-value=1.7e+02 Score=23.61 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=14.8
Q ss_pred HHHHhccCChhHHHHHHHHHHHCCC
Q 010830 403 ITMLLDADEPEIAIEIWNYILENGI 427 (499)
Q Consensus 403 i~~~~~~g~~~~a~~~~~~m~~~~~ 427 (499)
+...+..|+.+.+..+++.+.+.|.
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCC
Confidence 3334456666666666666666554
No 342
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=32.23 E-value=1.7e+02 Score=22.51 Aligned_cols=26 Identities=12% Similarity=0.356 Sum_probs=14.4
Q ss_pred HHhHHHHHHHHhcCCCHHHHHHHHHH
Q 010830 254 VLAYETFLITLIRGKQVDEALKFLRV 279 (499)
Q Consensus 254 ~~~~~~li~~~~~~~~~~~a~~~~~~ 279 (499)
..+|.-++..+.+...+-+.+..|+.
T Consensus 156 ~i~~~Ef~~~~~~~~~~~~~l~~~d~ 181 (183)
T 1s6c_A 156 IVTLDEFLESXQEDDNIMRSLQLFQN 181 (183)
T ss_dssp EECHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred cEeHHHHHHHHhcChHHHHHHHHhhc
Confidence 34566666666555555555555543
No 343
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=31.51 E-value=1.9e+02 Score=22.74 Aligned_cols=28 Identities=11% Similarity=0.126 Sum_probs=15.5
Q ss_pred HHHHhcCCCHHHHHHHHHHHhhCCCCCC
Q 010830 261 LITLIRGKQVDEALKFLRVMKGENCFPT 288 (499)
Q Consensus 261 i~~~~~~~~~~~a~~~~~~m~~~~~~p~ 288 (499)
+...+..|+.+.-.++.+.+.+.|..++
T Consensus 42 Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 42 LYDVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 3444455555555556666666665554
No 344
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=30.75 E-value=1.2e+02 Score=28.42 Aligned_cols=141 Identities=11% Similarity=0.071 Sum_probs=86.2
Q ss_pred cCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 010830 92 YDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171 (499)
Q Consensus 92 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 171 (499)
..+++.|.++-... +.+--...|..-...+...|++++|.++-....+.-.-+..|.+.+-..=..-|+..-.+..|.
T Consensus 342 l~n~~lA~~lA~R~--~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~ 419 (494)
T 1bpo_A 342 LQNPDLALRMAVRN--NLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFG 419 (494)
T ss_dssp TCCHHHHHHHHHHT--TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHH
T ss_pred cCCHHHHHHHHHhc--CCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHH
Confidence 35555555554422 3444455677777888999999999998777665545677777666665556677777888888
Q ss_pred HHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010830 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243 (499)
Q Consensus 172 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 243 (499)
.+.+.| +.+..----+.+..... |+.+-.++++.+=+ +..+... ..++ +..+..-|..+|.+.
T Consensus 420 ~Ll~~g-~Ln~~ESlEl~r~vL~q-~r~~llekWl~e~K--L~~SEeL-GDlv----k~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 420 ILLDQG-QLNKYESLELCRPVLQQ-GRKQLLEKWLKEDK--LECSEEL-GDLV----KSVDPTLALSVYLRA 482 (494)
T ss_dssp HHHHHS-CCCHHHHHHHHHHHHHT-TCHHHHHHHHHHTC--SCCCHHH-HHHH----HHHCSHHHHHHHHHH
T ss_pred HHhccC-ccchHHhhHHhHHHHhc-cHHHHHHHHHhcCC--ccccHHh-Hhhh----hhcCHHHHHHHHHHc
Confidence 887776 55554444555655556 66666666654422 2222221 1111 334556666666555
No 345
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=30.20 E-value=60 Score=21.86 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCC
Q 010830 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269 (499)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~ 269 (499)
-.++|...|.+|....++.| +. +|...+...+...+
T Consensus 15 t~eea~~~Fk~LL~e~~V~p-~~-tWe~~~~~i~~DpR 50 (82)
T 2dod_A 15 PLEARMKQFKDMLLERGVSA-FS-TWEKELHKIVFDPR 50 (82)
T ss_dssp CHHHHHHHHHHHHHHTTCCS-SS-CHHHHHHHHHTCSG
T ss_pred CHHHHHHHHHHHHHHcCcCC-CC-CHHHHHHHHccCCc
Confidence 35778888888887778877 33 67776666555443
No 346
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=28.27 E-value=2.6e+02 Score=23.28 Aligned_cols=28 Identities=11% Similarity=0.190 Sum_probs=16.0
Q ss_pred ChhhHHHHHHHHhccCChhHHHHHHHHH
Q 010830 395 TPLNCATAITMLLDADEPEIAIEIWNYI 422 (499)
Q Consensus 395 ~~~~~~~li~~~~~~g~~~~a~~~~~~m 422 (499)
+.......+..+.+.|+-++|.++|-+.
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 3344445556666667766666665443
No 347
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=27.80 E-value=4e+02 Score=27.85 Aligned_cols=109 Identities=11% Similarity=0.049 Sum_probs=70.3
Q ss_pred HHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCc---------------
Q 010830 188 LLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE--------------- 252 (499)
Q Consensus 188 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------------- 252 (499)
++..|... +..+-+.++. ...+.+...--.+..+|...|++++|.+.|++... |+...
T Consensus 816 l~~~L~~~-~~~~~a~eL~----~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~--gl~~~~~~~~~~~~~~~ll~ 888 (950)
T 4gq2_M 816 LVEKLFLF-KQYNACMQLI----GWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL--VLYSHTSQFAVLREFQEIAE 888 (950)
T ss_dssp HHHHHHHT-TCHHHHHHHG----GGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC--TTCSSCCSCGGGHHHHHHHH
T ss_pred HHHHHHHh-cHHHHHHHHH----hhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh--hcccCcccccchhhhhhccC
Confidence 45555555 7666655543 33334544445677788888888888888876532 22211
Q ss_pred -------hHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCH----hhHHHHHHHHHHcC
Q 010830 253 -------HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL----KFFSNALDILVKLN 303 (499)
Q Consensus 253 -------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~ 303 (499)
...-|..++..+-+.+.++-+.++-+...+.--.-|. ..++.+.++.+..|
T Consensus 889 ~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 889 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred cccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 1236899999999999999999988887754222232 35667777776554
No 348
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=27.75 E-value=2e+02 Score=21.81 Aligned_cols=59 Identities=8% Similarity=0.110 Sum_probs=35.7
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcc
Q 010830 137 RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195 (499)
Q Consensus 137 ~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 195 (499)
+.+.+.|.-...--..++..+...+..-.|.++++.+.+.+...+..|.-.-|..+...
T Consensus 16 ~~l~~~g~r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 74 (150)
T 2xig_A 16 MSIKKNGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKE 74 (150)
T ss_dssp HHHHHCC--CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 34555665455555666666666666777888888877665555555555555555555
No 349
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=27.58 E-value=1.9e+02 Score=21.44 Aligned_cols=57 Identities=12% Similarity=0.134 Sum_probs=31.8
Q ss_pred HHhCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcc
Q 010830 139 MKEDGVLSLPTFASIFDSYCGAG-KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195 (499)
Q Consensus 139 m~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 195 (499)
+.+.|.-....-..++..+...+ ..-.|.++++.+.+.+...+..|.-.-|..+...
T Consensus 9 l~~~g~r~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 66 (136)
T 1mzb_A 9 LRKAGLKVTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAA 66 (136)
T ss_dssp HHHTTCCCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHC
Confidence 44555433344455556665555 5667777777777665555555544445555444
No 350
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=27.14 E-value=1.1e+02 Score=19.43 Aligned_cols=46 Identities=9% Similarity=0.117 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcc
Q 010830 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195 (499)
Q Consensus 149 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 195 (499)
.++-++..+++..-+++++-.+++..+.| ..+..+|---++.+++.
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 46677778888888889999999888887 67777777777777665
No 351
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=26.78 E-value=3.4e+02 Score=28.38 Aligned_cols=131 Identities=8% Similarity=-0.011 Sum_probs=66.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHc
Q 010830 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302 (499)
Q Consensus 223 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 302 (499)
++..+...|..+-|.++. .+-|.++..-..+..+|...|++++|...|++.- .|+..+......
T Consensus 816 l~~~L~~~~~~~~a~eL~-------~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~-------- 879 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLI-------GWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAV-------- 879 (950)
T ss_dssp HHHHHHHTTCHHHHHHHG-------GGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGG--------
T ss_pred HHHHHHHhcHHHHHHHHH-------hhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccc--------
Confidence 334444555555443322 2223344344456777888888888888887643 232221111000
Q ss_pred CCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCH----HhHHHHHHHHHhcC
Q 010830 303 NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS----LTYNMIFECLIKNK 375 (499)
Q Consensus 303 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g 375 (499)
......++.... . -.....-|..++..+-+.+.++.+.++-+...+.--.-|. ..|+.++++.+..|
T Consensus 880 --~~~~~~ll~~~e-~---~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 880 --LREFQEIAEKYH-H---QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp --GHHHHHHHHHTT-T---CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred --hhhhhhccCccc-c---cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 001111111111 0 1123346778888888888888888888777764211122 35667777666544
No 352
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=26.33 E-value=65 Score=20.94 Aligned_cols=34 Identities=21% Similarity=0.355 Sum_probs=22.7
Q ss_pred CHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcC
Q 010830 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267 (499)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~ 267 (499)
..++|.+.|.+|.+..++.| +. +|...+..++..
T Consensus 13 t~eea~~~F~~LL~e~~V~~-~~-tWe~~~~~i~~D 46 (71)
T 1uzc_A 13 TKEEAKQAFKELLKEKRVPS-NA-SWEQAMKMIIND 46 (71)
T ss_dssp SHHHHHHHHHHHHHHTTCCT-TC-CHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHHcCcCC-CC-CHHHHHHHHccC
Confidence 45777778888777777777 33 676666655554
No 353
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=25.37 E-value=1.7e+02 Score=23.65 Aligned_cols=11 Identities=9% Similarity=-0.046 Sum_probs=4.7
Q ss_pred CchHHHHHHHH
Q 010830 197 NQTSRALEFLN 207 (499)
Q Consensus 197 ~~~~~a~~~~~ 207 (499)
|+.+....+++
T Consensus 17 g~~~~v~~ll~ 27 (231)
T 3aji_A 17 GKLDELKERIL 27 (231)
T ss_dssp TCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 44444444443
No 354
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.35 E-value=4.5e+02 Score=25.06 Aligned_cols=66 Identities=14% Similarity=0.246 Sum_probs=45.4
Q ss_pred CHhHHHHHHHHHHcCCChHHHHHHHHHHHHC-CCCCCH--HhHH-HHHHHHHhcCCHhHHHHHHHHHHHC
Q 010830 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH-GAFPDS--LTYN-MIFECLIKNKRVHEVEKFFHEMIKN 390 (499)
Q Consensus 325 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~--~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~ 390 (499)
....+|.+++.|...+.++.|..+..+..-- ...++. ..|. -+...+.-.+++.+|.+.+....+.
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4678999999999999999999999887521 000111 1121 2234456678999999998888764
No 355
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=25.23 E-value=2.2e+02 Score=21.40 Aligned_cols=58 Identities=17% Similarity=0.126 Sum_probs=33.2
Q ss_pred HHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcc
Q 010830 138 VMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195 (499)
Q Consensus 138 ~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 195 (499)
.+.+.|.-....-..++..+...+..-.|.++++.+.+.+...+..|.-.-|..+...
T Consensus 12 ~l~~~g~r~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 69 (145)
T 2fe3_A 12 TLKETGVRITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRES 69 (145)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHC
Confidence 3555554334445555555555566667777777776665455555555455555554
No 356
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=25.03 E-value=2.2e+02 Score=21.62 Aligned_cols=58 Identities=14% Similarity=0.097 Sum_probs=32.6
Q ss_pred HHHhCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcc
Q 010830 138 VMKEDGVLSLPTFASIFDSYCGAG-KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195 (499)
Q Consensus 138 ~m~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 195 (499)
.+.+.|.-....-..++..+...+ ..-.|.++++.+.+.+...+..|.-.-|..+...
T Consensus 7 ~l~~~g~r~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 65 (150)
T 2w57_A 7 ALKDAGLKVTLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDA 65 (150)
T ss_dssp HHHHTTCCCCHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHC
Confidence 345555433334445555555555 5666777777776665455555555455555554
No 357
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=24.96 E-value=2.9e+02 Score=22.68 Aligned_cols=47 Identities=15% Similarity=0.076 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHhccCCCCHHH--------HHHHHHHHHhcCCHHHHHHHHHHHhH
Q 010830 199 TSRALEFLNRVKKIVDPDGDS--------FAILLEGWEKEGNVEEANKTFGEMVE 245 (499)
Q Consensus 199 ~~~a~~~~~~~~~~~~~~~~~--------~~~ll~~~~~~g~~~~a~~~~~~~~~ 245 (499)
++.|+.+++.+++....+... -...+-.|.+.|.+++|.+++++...
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 455666666665533221111 11234456677777777777777643
No 358
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=24.94 E-value=97 Score=21.52 Aligned_cols=15 Identities=27% Similarity=0.151 Sum_probs=6.5
Q ss_pred hHHHHHHHHhcCCCH
Q 010830 256 AYETFLITLIRGKQV 270 (499)
Q Consensus 256 ~~~~li~~~~~~~~~ 270 (499)
+|..++.++...|+.
T Consensus 70 Af~~F~~aL~et~~~ 84 (97)
T 3ygs_P 70 ALPLFISCLEDTGQD 84 (97)
T ss_dssp HHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHcCcH
Confidence 344444444443433
No 359
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=24.82 E-value=2e+02 Score=23.12 Aligned_cols=19 Identities=21% Similarity=0.114 Sum_probs=9.0
Q ss_pred HHHHHhcCChhHHHHHHHH
Q 010830 154 FDSYCGAGKYDEAVMSFDV 172 (499)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~ 172 (499)
+...++.|+++....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3334445555555554443
No 360
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=24.58 E-value=3e+02 Score=22.84 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHcCCHhHHHHHHHH
Q 010830 290 KFFSNALDILVKLNDSTHAVQLWDI 314 (499)
Q Consensus 290 ~~~~~li~~~~~~~~~~~a~~~~~~ 314 (499)
.++.-++..+.+...+-.+...|+.
T Consensus 230 Is~~Ef~~~~~~~~~l~~~l~~~d~ 254 (256)
T 2jul_A 230 VTIDEFLETCQKDENIMNSMQLFEN 254 (256)
T ss_dssp BCHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred EeHHHHHHHHHhCHHHHHHHHhhcc
Confidence 4555566666665555555555544
No 361
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=24.37 E-value=1.7e+02 Score=19.90 Aligned_cols=55 Identities=16% Similarity=0.209 Sum_probs=31.6
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcc
Q 010830 134 NAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195 (499)
Q Consensus 134 ~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 195 (499)
.+++.+.+.++.+..-+..+-.. ....++|.++++.+... ...+|..++.++...
T Consensus 26 ~lld~L~~~~vlt~~~~e~I~~~---~t~~~kar~Lld~l~~k----G~~af~~F~~aL~~~ 80 (94)
T 2p1h_A 26 YIMDHMISDGFLTISEEEKVRNE---PTQQQRAAMLIKMILKK----DNDSYVSFYNALLHE 80 (94)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHTS---SSHHHHHHHHHHHHTTS----CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCHHHHHHHHcC---CChHHHHHHHHHHHHHc----CHHHHHHHHHHHHHc
Confidence 45666666666555555444432 45666677777666533 345666666666554
No 362
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=23.61 E-value=1.2e+02 Score=22.53 Aligned_cols=18 Identities=22% Similarity=0.436 Sum_probs=9.7
Q ss_pred HHHHhcCCHHHHHHHHHH
Q 010830 225 EGWEKEGNVEEANKTFGE 242 (499)
Q Consensus 225 ~~~~~~g~~~~a~~~~~~ 242 (499)
...++.|+.+.+..+++.
T Consensus 7 ~~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 7 SGAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHHTCHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHh
Confidence 334455666655555554
No 363
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=23.36 E-value=2.1e+02 Score=21.51 Aligned_cols=56 Identities=7% Similarity=0.027 Sum_probs=28.2
Q ss_pred HHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcc
Q 010830 139 MKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195 (499)
Q Consensus 139 m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 195 (499)
+.+.|.-....-..++..+...+ .-.|.++++.+.+.+...+..|.-.-|..+...
T Consensus 10 L~~~g~r~T~qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~ 65 (145)
T 3eyy_A 10 LRQRGYRLTPQRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEEL 65 (145)
T ss_dssp HHTTTCCCCHHHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHH
T ss_pred HHHcCCCcCHHHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHC
Confidence 44444332333344444444445 556777777776655445555444444444444
No 364
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=23.33 E-value=5.5e+02 Score=25.39 Aligned_cols=351 Identities=11% Similarity=0.027 Sum_probs=0.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHH-------hcCChhHHHHHHHHHHhCC--CCcCHHHHHHH
Q 010830 118 LMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYC-------GAGKYDEAVMSFDVMSMHG--VEQDVVAVNSL 188 (499)
Q Consensus 118 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~-------~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~l 188 (499)
.+|--|.|+|++++|.++.++....-..-...|...+..|+ ...--++....|+...+.. ..|=-...-.+
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~s~~~~L~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY~I 236 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYASSKDHGLPVEYSTKLHTEYNQHIKSSLDGDPYRLAVYKL 236 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q ss_pred HHHH------------------------HccCC-----------chHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCH
Q 010830 189 LSAI------------------------CRQEN-----------QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233 (499)
Q Consensus 189 l~~~------------------------~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 233 (499)
|..| ++. + -+++....+.+.-...-.. .....+.-.|++
T Consensus 237 ig~cD~~~~~~~~v~~siED~LWl~L~lvre-~~~~~~~~~e~ytL~~LQ~~I~~yGe~~F~~-----lYf~vLlLtgqF 310 (661)
T 2qx5_A 237 IGRCDLSRKNIPAVTLSIEDWLWMHLMLIKE-KDAENDPVYERYSLEDFQNIIISYGPSRFSN-----YYLQTLLLSGLY 310 (661)
T ss_dssp HHTCCGGGCCCGGGCCSHHHHHHHHHHTCCC-----------CCCHHHHHHHHHHHCGGGGTT-----CHHHHHHHTTCH
T ss_pred HhcccccccchHHHhccHHHHHHHHHHhccC-CCcccccccccccHHHHHHHHHHhhhhhhhh-----HHHHHHHHHhhH
Q ss_pred HHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHc---CCHhHHHH
Q 010830 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL---NDSTHAVQ 310 (499)
Q Consensus 234 ~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---~~~~~a~~ 310 (499)
|.|.+.+-..-.- +.+++...+..|.-.+- =+.+......-...-+..||..|.+. .+...|.+
T Consensus 311 E~AI~~L~~~~~v------dAVH~AIaL~~~gLL~~-------~~~lls~~~~~~~lN~arLI~~Yt~~F~~td~~~Al~ 377 (661)
T 2qx5_A 311 GLAIDYTYTFSEM------DAVHLAIGLASLKLFKI-------DSSTRLTKKPKRDIRFANILANYTKSFRYSDPRVAVE 377 (661)
T ss_dssp HHHHHHHHTTCHH------HHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTTTTCHHHHHH
T ss_pred HHHHHHHHhcCch------hHHHHHHHHHHcCCccC-------CCcccccCCCcccccHHHHHHHHHHHhhcCCHHHHHH
Q ss_pred HHHHHHhcCCCCCCC-----HhHHHHHHHHHHcCCChHHHH-----------HHHHHHHHCCCCCCH------HhHHHHH
Q 010830 311 LWDIMVGIGFNLMPN-----LIMYNAVIGLLCNNDDVDNVF-----------RFFDQMVFHGAFPDS------LTYNMIF 368 (499)
Q Consensus 311 ~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~-----------~~~~~m~~~g~~p~~------~~~~~ll 368 (499)
.|-.+ ... + ...+..+-......++++.-+ .++++-... +..+. .......
T Consensus 378 Y~~li-~l~-----~g~~~~~~~~~~l~eLvletr~f~~LLG~i~~dG~r~~G~i~~~~~l-i~l~d~~~~~~~i~~~aA 450 (661)
T 2qx5_A 378 YLVLI-TLN-----EGPTDVELCHEALRELVLETKEFTVLLGKIGRDGARIPGVIEERQPL-LHVRDEKEFLHTITEQAA 450 (661)
T ss_dssp HHHGG-GGS-----CCHHHHHHHHHHHHHHHHHHCCHHHHHCEECTTSCEECCHHHHTCGG-GTCSCHHHHHHHHHHHHH
T ss_pred HHHHH-hcc-----CCchHHHHHHHHHHHHHHhcccHHHHcCCcCCCCCcCcchHHHhhcc-cccccHHHHHHHHHHHHH
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCC----------------hhHHHHHHHHHHHC-----CC
Q 010830 369 ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE----------------PEIAIEIWNYILEN-----GI 427 (499)
Q Consensus 369 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----------------~~~a~~~~~~m~~~-----~~ 427 (499)
.-+...|++++|..+|+...+ ..--..+.+.++.-....-. ...|.++.+..... .+
T Consensus 451 ~~ae~~G~~~dAi~LY~La~~--~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~~ 528 (661)
T 2qx5_A 451 RRADEDGRIYDSILLYQLAEE--YDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQI 528 (661)
T ss_dssp HHHHHTTCHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHTTS
T ss_pred HHHHHCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchhhhhc
Q ss_pred CC-hHHHHHHHHHH-----HHhCCChHHHHHHHHHHHHcCCccCH--HHHHHHHHHHHhcccc-----------hHHHHH
Q 010830 428 LP-LEASANELLVG-----LRNLGRLSDVRRFAEEMLNRRILIYE--VTMHKLKKAFYNESRS-----------MRDIFD 488 (499)
Q Consensus 428 ~p-~~~~~~~ll~~-----~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~-----------a~~~~~ 488 (499)
.+ +..++..|++. +...|+++.|.+.++++ ++.|.. .......+.|...++. ++..+.
T Consensus 529 ~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L---~llPl~d~~~i~~~a~~f~~l~~~V~~~lP~lLl~aM~~l~ 605 (661)
T 2qx5_A 529 HVKNKEICMLLLNISSIRELYFNKQWQETLSQMELL---DLLPFSDELSARKKAQDFSNLDDNIVKNIPNLLIITLSCIS 605 (661)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT---SCSCC-----CHHHHHHGGGSCHHHHTTHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCCCchHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhcCC
Q 010830 489 SLERRCKTSQM 499 (499)
Q Consensus 489 ~~~~~~~~~~~ 499 (499)
...++.+..+|
T Consensus 606 ~~~~~l~~~~~ 616 (661)
T 2qx5_A 606 NMIHILNESKY 616 (661)
T ss_dssp HHHHHHHSTTC
T ss_pred HHHHHHhcCCC
No 365
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=21.55 E-value=62 Score=27.42 Aligned_cols=20 Identities=5% Similarity=0.009 Sum_probs=12.5
Q ss_pred HHHHhcccchHHHHHHHHHHHh
Q 010830 474 KAFYNESRSMRDIFDSLERRCK 495 (499)
Q Consensus 474 ~~~~~~g~~a~~~~~~~~~~~~ 495 (499)
...++.|+. ++++.+++++-
T Consensus 238 ~~A~~~g~~--~iv~~Ll~~ga 257 (273)
T 2pnn_A 238 ALAASSGKI--GVLAYILQREI 257 (273)
T ss_dssp HHHHHTTCH--HHHHHHHHHHT
T ss_pred HHHHHhChH--HHHHHHHHCCC
Confidence 334556666 67777777665
No 366
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=21.51 E-value=3.8e+02 Score=22.90 Aligned_cols=30 Identities=17% Similarity=0.299 Sum_probs=18.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh-CCCCc
Q 010830 150 FASIFDSYCGAGKYDEAVMSFDVMSM-HGVEQ 180 (499)
Q Consensus 150 ~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p 180 (499)
...++.... .|+.++|.+++..+.. .|..|
T Consensus 231 ~~~l~~~~~-~~~~~~a~~~l~~l~~~~g~~~ 261 (319)
T 2chq_A 231 MTELIQTAL-KGNFMEARELLDRLMVEYGMSG 261 (319)
T ss_dssp HHHHHHHHH-HTCHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHH-hCCHHHHHHHHHHHHHHcCCCH
Confidence 344444443 3677888888888776 66544
No 367
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=21.51 E-value=2.3e+02 Score=20.38 Aligned_cols=66 Identities=6% Similarity=-0.033 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHH-CCCCCChhhHHHHHHHHhccCChh
Q 010830 342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK-NEWQPTPLNCATAITMLLDADEPE 413 (499)
Q Consensus 342 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~p~~~~~~~li~~~~~~g~~~ 413 (499)
+.+|+.-+++.... .+|......++..+... ++.++++.+...+ .|+ .+.++.-.+....+.|-.+
T Consensus 4 ~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~ 70 (119)
T 1wty_A 4 LARAVERLKAALER--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLP 70 (119)
T ss_dssp HHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCC
Confidence 34444444444332 23434444444433222 2334444443333 243 2334444444444444443
No 368
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=20.98 E-value=4.1e+02 Score=22.99 Aligned_cols=17 Identities=0% Similarity=-0.220 Sum_probs=12.3
Q ss_pred hcCChhHHHHHHHHHHh
Q 010830 159 GAGKYDEAVMSFDVMSM 175 (499)
Q Consensus 159 ~~g~~~~A~~~~~~m~~ 175 (499)
..+++++|..++.++..
T Consensus 248 ~~~~~~~a~~~~~~l~~ 264 (324)
T 3u61_B 248 KNKDVKQLRALAPKYAA 264 (324)
T ss_dssp HTTCHHHHHHHHHHHSS
T ss_pred HcCCHHHHHHHHHHhcc
Confidence 45677788887777765
No 369
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=20.91 E-value=3e+02 Score=21.35 Aligned_cols=60 Identities=7% Similarity=-0.051 Sum_probs=44.5
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHCCCCC--hHHHHHHHHH-H-----HHhCCChHHHHHHHHHHHH
Q 010830 399 CATAITMLLDADEPEIAIEIWNYILENGILP--LEASANELLV-G-----LRNLGRLSDVRRFAEEMLN 459 (499)
Q Consensus 399 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~-~-----~~~~g~~~~a~~~~~~m~~ 459 (499)
|...+..|- .|++-+|-++|+..=+..-.+ ....|..||. . ..+.|+...|..++++...
T Consensus 36 ~~~~i~lFn-~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYN-SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 444444444 499999999999987765556 6677888887 2 2356999999999998875
No 370
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=20.79 E-value=5.1e+02 Score=24.03 Aligned_cols=140 Identities=9% Similarity=0.104 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHHhhC--------CCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCC--CCCHhHHHHHHHHHHc
Q 010830 269 QVDEALKFLRVMKGE--------NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL--MPNLIMYNAVIGLLCN 338 (499)
Q Consensus 269 ~~~~a~~~~~~m~~~--------~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~li~~~~~ 338 (499)
..++...+++..... ++..+......++.. ..|+...+..+++.+......- .....+...
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~------- 236 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPEL------- 236 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHH-------
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHH-------
Confidence 456666666665442 233455555555554 4678888887777766543000 001112111
Q ss_pred CCChHHHHHHHHHHHHCC-CC--CCHHhHHHHHHHH---HhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCC-
Q 010830 339 NDDVDNVFRFFDQMVFHG-AF--PDSLTYNMIFECL---IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE- 411 (499)
Q Consensus 339 ~~~~~~a~~~~~~m~~~g-~~--p~~~~~~~ll~~~---~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~- 411 (499)
+++..... .. .+...+-.++.++ .+.++.+.|+..+.+|++.|..|....-..++.+.-..|.
T Consensus 237 ----------v~~~l~~~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a 306 (447)
T 3pvs_A 237 ----------LTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNA 306 (447)
T ss_dssp ----------HHHHHTCCCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGG
T ss_pred ----------HHHHHhhhhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCC
Confidence 11222110 00 0111122233443 3467899999999999998877765555555555555443
Q ss_pred ----hhHHHHHHHHHHHCCC
Q 010830 412 ----PEIAIEIWNYILENGI 427 (499)
Q Consensus 412 ----~~~a~~~~~~m~~~~~ 427 (499)
+..|...++....-|+
T Consensus 307 ~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 307 DPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp CTHHHHHHHHHHHHHHHSCH
T ss_pred ChhHHHHHHHHHHHHHHhCC
Confidence 2345555555556664
No 371
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=20.32 E-value=67 Score=23.47 Aligned_cols=49 Identities=14% Similarity=0.081 Sum_probs=27.1
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHH
Q 010830 294 NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFR 347 (499)
Q Consensus 294 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 347 (499)
-.|...+.+++.+-|+++++-..+.| +...|.+++-.|...=+++-+++
T Consensus 37 DAietAa~S~d~elaEeLL~yFVe~g-----~kEcF~A~LytCYdLlrpDvVLE 85 (125)
T 3qil_A 37 DAMQYASESKDTELAEELLQWFLQEE-----KRECFGACLFTCYDLLRPDVVLE 85 (125)
T ss_dssp HHHHTTTSSCCSHHHHHHHHHHTTSC-----SHHHHHHHHHHHTTCSCTTHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-----chHHHHHHHHHHHhccChHHHHH
Confidence 34555555566666666666666555 45555555555555544444443
No 372
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=20.24 E-value=4.2e+02 Score=22.84 Aligned_cols=19 Identities=5% Similarity=0.039 Sum_probs=11.1
Q ss_pred HHHHHHhcCChhHHHHHHH
Q 010830 153 IFDSYCGAGKYDEAVMSFD 171 (499)
Q Consensus 153 li~~~~~~g~~~~A~~~~~ 171 (499)
.+...++.|+.+....++.
T Consensus 27 ~L~~A~~~g~~~~v~~ll~ 45 (351)
T 3utm_A 27 ELLEAARSGNEEKLMALLT 45 (351)
T ss_dssp HHHHHHHHTCHHHHHHHCC
T ss_pred hHHHHHHcCCHHHHHHHHH
Confidence 3444556677766666654
Done!