Query 010831
Match_columns 499
No_of_seqs 425 out of 2703
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 05:03:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010831.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010831hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 100.0 5E-103 1E-107 796.7 36.4 348 74-434 1-351 (371)
2 PRK14296 chaperone protein Dna 100.0 4.4E-86 9.6E-91 687.9 37.2 346 76-434 3-362 (372)
3 PRK14278 chaperone protein Dna 100.0 4.3E-84 9.3E-89 674.6 39.0 347 76-434 2-351 (378)
4 PRK14298 chaperone protein Dna 100.0 3.9E-84 8.5E-89 674.3 38.5 346 76-435 4-353 (377)
5 PRK14276 chaperone protein Dna 100.0 5.3E-84 1.2E-88 674.7 38.6 346 76-433 3-356 (380)
6 PRK14288 chaperone protein Dna 100.0 3.7E-84 8.1E-89 673.1 37.1 344 75-434 1-346 (369)
7 PRK14287 chaperone protein Dna 100.0 8.2E-84 1.8E-88 671.0 38.2 346 76-434 3-349 (371)
8 PRK14277 chaperone protein Dna 100.0 7.4E-84 1.6E-88 674.9 37.9 351 75-434 3-366 (386)
9 PRK14280 chaperone protein Dna 100.0 1.7E-83 3.7E-88 670.1 39.0 347 76-434 3-354 (376)
10 PRK14297 chaperone protein Dna 100.0 2.8E-83 6E-88 669.6 38.0 349 76-434 3-359 (380)
11 PRK14286 chaperone protein Dna 100.0 5.9E-83 1.3E-87 664.8 35.9 348 76-435 3-359 (372)
12 PRK14281 chaperone protein Dna 100.0 2.9E-82 6.3E-87 664.8 37.9 356 76-433 2-372 (397)
13 PRK14284 chaperone protein Dna 100.0 4.1E-82 8.9E-87 662.8 38.5 346 77-434 1-367 (391)
14 PTZ00037 DnaJ_C chaperone prot 100.0 5.4E-82 1.2E-86 663.9 35.0 334 75-433 26-366 (421)
15 PRK14279 chaperone protein Dna 100.0 7.5E-82 1.6E-86 660.3 35.1 353 75-434 7-379 (392)
16 PRK14285 chaperone protein Dna 100.0 2.5E-81 5.4E-86 651.1 34.7 346 76-437 2-357 (365)
17 PRK14295 chaperone protein Dna 100.0 5.1E-81 1.1E-85 653.4 36.9 354 75-434 7-373 (389)
18 PRK14301 chaperone protein Dna 100.0 5.9E-81 1.3E-85 650.0 36.4 345 76-433 3-350 (373)
19 PRK14282 chaperone protein Dna 100.0 1.1E-80 2.3E-85 647.8 37.8 349 76-435 3-365 (369)
20 PRK14300 chaperone protein Dna 100.0 2.6E-80 5.6E-85 645.3 37.2 346 76-433 2-352 (372)
21 PRK14294 chaperone protein Dna 100.0 2.4E-80 5.2E-85 644.5 35.8 345 76-434 3-351 (366)
22 PRK10767 chaperone protein Dna 100.0 1.9E-79 4.1E-84 639.4 38.1 344 76-433 3-348 (371)
23 PRK14289 chaperone protein Dna 100.0 7.1E-79 1.5E-83 637.9 38.0 355 76-433 4-364 (386)
24 TIGR02349 DnaJ_bact chaperone 100.0 4.5E-79 9.8E-84 633.2 35.6 346 78-433 1-353 (354)
25 PRK14291 chaperone protein Dna 100.0 5.1E-79 1.1E-83 637.6 35.6 356 75-436 1-373 (382)
26 PRK14283 chaperone protein Dna 100.0 1.4E-78 3E-83 633.8 38.6 351 76-433 4-356 (378)
27 PRK14293 chaperone protein Dna 100.0 3E-78 6.5E-83 630.5 35.5 354 76-435 2-356 (374)
28 PRK14292 chaperone protein Dna 100.0 5.4E-78 1.2E-82 628.4 37.4 346 77-434 2-349 (371)
29 PRK14290 chaperone protein Dna 100.0 3.8E-77 8.3E-82 620.3 36.5 351 76-436 2-359 (365)
30 KOG0712 Molecular chaperone (D 100.0 2.8E-70 6.1E-75 549.8 24.9 329 76-431 3-337 (337)
31 PRK14299 chaperone protein Dna 100.0 6.9E-61 1.5E-65 484.3 28.5 275 76-434 3-287 (291)
32 PRK10266 curved DNA-binding pr 100.0 1.6E-59 3.5E-64 477.6 29.7 286 76-434 3-294 (306)
33 KOG0715 Molecular chaperone (D 100.0 4.8E-45 1E-49 366.6 13.7 255 68-358 34-288 (288)
34 TIGR03835 termin_org_DnaJ term 100.0 9.3E-42 2E-46 367.3 24.0 125 290-418 692-817 (871)
35 KOG0713 Molecular chaperone (D 100.0 2E-43 4.3E-48 351.4 10.2 315 72-421 11-328 (336)
36 KOG0714 Molecular chaperone (D 99.9 1.1E-22 2.3E-27 203.4 15.3 263 75-397 1-305 (306)
37 PF01556 CTDII: DnaJ C termina 99.9 7.8E-22 1.7E-26 162.5 8.0 80 347-426 1-81 (81)
38 KOG0716 Molecular chaperone (D 99.8 1.2E-19 2.7E-24 176.1 6.2 72 76-147 30-102 (279)
39 COG2214 CbpA DnaJ-class molecu 99.8 2.6E-18 5.6E-23 164.1 14.5 69 74-142 3-73 (237)
40 PTZ00341 Ring-infected erythro 99.7 8.5E-19 1.8E-23 194.2 6.0 77 72-148 568-644 (1136)
41 KOG0718 Molecular chaperone (D 99.7 1.3E-18 2.9E-23 178.9 5.3 73 76-148 8-84 (546)
42 KOG0717 Molecular chaperone (D 99.7 5E-18 1.1E-22 174.7 4.1 74 74-147 5-80 (508)
43 PF00226 DnaJ: DnaJ domain; I 99.7 1.2E-17 2.7E-22 131.0 5.1 62 78-139 1-64 (64)
44 KOG0691 Molecular chaperone (D 99.7 1.6E-17 3.5E-22 166.6 5.8 88 76-170 4-92 (296)
45 KOG0624 dsRNA-activated protei 99.7 1.8E-16 3.9E-21 158.6 8.1 71 76-147 393-467 (504)
46 PHA03102 Small T antigen; Revi 99.6 1.7E-16 3.7E-21 145.0 5.9 83 77-170 5-89 (153)
47 KOG0719 Molecular chaperone (D 99.6 1.8E-16 3.9E-21 150.8 5.4 69 76-144 13-84 (264)
48 smart00271 DnaJ DnaJ molecular 99.6 1E-15 2.2E-20 118.2 5.5 58 77-134 1-60 (60)
49 COG0484 DnaJ DnaJ-class molecu 99.6 3.5E-15 7.5E-20 153.3 10.7 118 221-350 158-345 (371)
50 cd06257 DnaJ DnaJ domain or J- 99.6 2.7E-15 5.8E-20 113.8 5.9 54 78-131 1-55 (55)
51 KOG0721 Molecular chaperone (D 99.6 2.4E-15 5.1E-20 142.1 6.3 72 76-147 98-170 (230)
52 PF00684 DnaJ_CXXCXGXG: DnaJ c 99.6 8.4E-15 1.8E-19 116.0 6.8 65 225-289 1-66 (66)
53 KOG0550 Molecular chaperone (D 99.5 1.3E-14 2.8E-19 148.4 5.5 89 75-168 371-461 (486)
54 PRK10767 chaperone protein Dna 99.5 2.6E-13 5.7E-18 142.2 11.6 119 222-352 159-345 (371)
55 KOG0722 Molecular chaperone (D 99.5 9.3E-15 2E-19 140.5 -0.1 92 36-141 6-97 (329)
56 PRK14282 chaperone protein Dna 99.4 3.1E-13 6.6E-18 141.5 9.4 118 222-351 169-359 (369)
57 PRK01356 hscB co-chaperone Hsc 99.4 2.2E-13 4.8E-18 127.0 6.1 66 76-141 1-72 (166)
58 PRK14290 chaperone protein Dna 99.4 4.3E-13 9.4E-18 140.2 7.9 119 221-351 164-352 (365)
59 PRK05014 hscB co-chaperone Hsc 99.4 3.5E-13 7.7E-18 126.3 6.5 64 77-140 1-72 (171)
60 PRK14294 chaperone protein Dna 99.4 1E-12 2.3E-17 137.4 9.0 118 222-351 161-346 (366)
61 PRK14298 chaperone protein Dna 99.4 1.4E-12 3.1E-17 136.8 8.9 119 222-352 158-348 (377)
62 PRK14295 chaperone protein Dna 99.3 3.3E-12 7.1E-17 134.6 10.1 114 222-348 183-365 (389)
63 PRK14285 chaperone protein Dna 99.3 1.6E-12 3.4E-17 136.0 7.6 117 222-350 163-348 (365)
64 PRK00294 hscB co-chaperone Hsc 99.3 1.9E-12 4.2E-17 121.3 6.9 65 76-140 3-75 (173)
65 PRK03578 hscB co-chaperone Hsc 99.3 1.9E-12 4.2E-17 121.7 6.5 65 76-140 5-77 (176)
66 PRK14284 chaperone protein Dna 99.3 4.6E-12 1E-16 133.6 9.5 117 222-350 175-361 (391)
67 KOG0720 Molecular chaperone (D 99.3 1.2E-12 2.6E-17 135.5 4.7 66 76-141 234-299 (490)
68 PRK14300 chaperone protein Dna 99.3 3.3E-12 7.1E-17 133.9 8.0 115 222-348 162-345 (372)
69 PRK14287 chaperone protein Dna 99.3 4.4E-12 9.5E-17 132.8 8.8 117 222-350 155-343 (371)
70 PRK14301 chaperone protein Dna 99.3 4.3E-12 9.3E-17 133.0 8.7 117 222-350 161-345 (373)
71 PRK14278 chaperone protein Dna 99.3 7.2E-12 1.6E-16 131.5 9.8 115 222-348 156-343 (378)
72 PTZ00100 DnaJ chaperone protei 99.3 3.7E-12 7.9E-17 110.9 5.3 51 77-130 65-115 (116)
73 PRK14286 chaperone protein Dna 99.3 1.1E-11 2.3E-16 130.0 9.1 116 222-349 167-351 (372)
74 TIGR02349 DnaJ_bact chaperone 99.3 6.5E-12 1.4E-16 130.9 7.3 116 222-349 160-347 (354)
75 PRK14288 chaperone protein Dna 99.3 1E-11 2.2E-16 130.0 8.3 116 221-348 155-338 (369)
76 PRK14281 chaperone protein Dna 99.3 9.2E-12 2E-16 131.6 7.7 115 221-347 178-364 (397)
77 PRK14276 chaperone protein Dna 99.2 8E-12 1.7E-16 131.3 7.0 115 222-348 163-349 (380)
78 PRK14279 chaperone protein Dna 99.2 1.5E-11 3.3E-16 129.6 9.1 114 221-347 189-370 (392)
79 PRK14280 chaperone protein Dna 99.2 2E-11 4.3E-16 128.2 9.6 115 222-348 160-346 (376)
80 PRK14293 chaperone protein Dna 99.2 1.4E-11 3E-16 129.3 7.7 118 222-351 160-350 (374)
81 PRK14289 chaperone protein Dna 99.2 2E-11 4.4E-16 128.6 8.9 114 221-346 170-355 (386)
82 PRK14297 chaperone protein Dna 99.2 2.6E-11 5.7E-16 127.5 9.0 114 222-347 165-350 (380)
83 PRK14277 chaperone protein Dna 99.2 3.3E-11 7.1E-16 127.0 9.4 115 222-348 172-358 (386)
84 PRK09430 djlA Dna-J like membr 99.2 1.1E-11 2.5E-16 124.1 5.2 57 76-132 199-263 (267)
85 PHA02624 large T antigen; Prov 99.2 1.5E-11 3.1E-16 133.4 5.5 60 76-138 10-71 (647)
86 PRK14296 chaperone protein Dna 99.2 5.2E-11 1.1E-15 124.8 9.3 115 222-348 166-354 (372)
87 PRK14283 chaperone protein Dna 99.2 3.3E-11 7.2E-16 126.6 7.6 115 222-348 163-349 (378)
88 PRK14292 chaperone protein Dna 99.2 3.3E-11 7.1E-16 126.4 6.9 117 221-349 156-342 (371)
89 PRK14291 chaperone protein Dna 99.1 2.1E-10 4.5E-15 120.8 11.3 105 222-339 173-346 (382)
90 PTZ00037 DnaJ_C chaperone prot 99.1 1E-10 2.2E-15 124.1 7.8 115 221-345 165-356 (421)
91 COG5407 SEC63 Preprotein trans 99.1 9.9E-11 2.1E-15 120.7 4.3 73 76-148 97-175 (610)
92 PRK01773 hscB co-chaperone Hsc 99.0 1.1E-09 2.4E-14 102.7 6.7 64 76-139 1-72 (173)
93 TIGR00714 hscB Fe-S protein as 98.9 2.3E-09 5E-14 99.3 5.9 53 89-141 3-61 (157)
94 PRK14299 chaperone protein Dna 98.9 7.3E-09 1.6E-13 105.3 9.4 72 341-420 125-197 (291)
95 PLN03165 chaperone protein dna 98.8 1.3E-08 2.8E-13 88.2 6.2 61 220-292 39-99 (111)
96 PF01556 CTDII: DnaJ C termina 98.8 8.6E-09 1.9E-13 84.8 4.6 49 295-343 27-76 (81)
97 COG5269 ZUO1 Ribosome-associat 98.7 1.1E-08 2.5E-13 99.6 4.2 73 69-141 35-113 (379)
98 PRK10266 curved DNA-binding pr 98.7 7.4E-08 1.6E-12 98.6 9.3 74 343-418 115-202 (306)
99 KOG1150 Predicted molecular ch 98.6 3.4E-08 7.5E-13 92.5 4.4 63 75-137 51-115 (250)
100 KOG0712 Molecular chaperone (D 98.3 6.9E-07 1.5E-11 91.4 6.6 46 293-339 277-324 (337)
101 KOG0568 Molecular chaperone (D 98.2 1.1E-06 2.5E-11 84.1 5.1 55 78-132 48-103 (342)
102 TIGR02642 phage_xxxx uncharact 98.2 8.6E-07 1.9E-11 83.8 4.0 49 265-314 99-149 (186)
103 KOG1789 Endocytosis protein RM 98.2 2E-06 4.3E-11 96.6 5.3 54 76-131 1280-1337(2235)
104 KOG0723 Molecular chaperone (D 97.7 4.7E-05 1E-09 64.8 5.1 52 78-132 57-108 (112)
105 COG1107 Archaea-specific RecJ- 97.7 2.7E-05 5.9E-10 83.5 3.2 68 223-291 3-80 (715)
106 PF00684 DnaJ_CXXCXGXG: DnaJ c 97.5 5.8E-05 1.3E-09 59.7 2.3 44 221-275 14-66 (66)
107 TIGR03835 termin_org_DnaJ term 97.5 0.00035 7.5E-09 77.9 8.9 71 77-147 2-72 (871)
108 KOG2813 Predicted molecular ch 97.1 0.00048 1E-08 69.2 4.1 31 267-300 247-277 (406)
109 KOG3192 Mitochondrial J-type c 96.8 0.0013 2.9E-08 59.9 4.0 65 75-139 6-78 (168)
110 COG1107 Archaea-specific RecJ- 96.5 0.0021 4.6E-08 69.5 3.5 45 239-293 2-67 (715)
111 PLN03165 chaperone protein dna 96.4 0.0027 5.8E-08 55.4 2.9 40 224-278 54-99 (111)
112 COG1076 DjlA DnaJ-domain-conta 95.9 0.0044 9.5E-08 58.4 2.3 53 77-129 113-173 (174)
113 TIGR02642 phage_xxxx uncharact 95.9 0.0056 1.2E-07 58.1 2.7 29 240-278 100-128 (186)
114 COG1076 DjlA DnaJ-domain-conta 95.4 0.01 2.2E-07 56.0 2.5 63 78-140 2-72 (174)
115 KOG2813 Predicted molecular ch 93.9 0.028 6.1E-07 56.9 1.7 59 222-292 198-258 (406)
116 KOG0431 Auxilin-like protein a 93.3 0.09 1.9E-06 56.9 4.5 28 86-113 397-424 (453)
117 PF03656 Pam16: Pam16; InterP 92.7 0.23 5E-06 44.4 5.4 55 78-135 59-113 (127)
118 KOG0715 Molecular chaperone (D 90.0 0.45 9.7E-06 48.5 5.1 52 216-279 175-231 (288)
119 KOG2824 Glutaredoxin-related p 81.4 1.4 3E-05 44.2 3.3 50 223-285 230-279 (281)
120 PF11833 DUF3353: Protein of u 81.1 2.9 6.2E-05 40.2 5.3 40 86-132 1-40 (194)
121 PRK14714 DNA polymerase II lar 80.0 1.1 2.4E-05 53.3 2.5 67 205-290 643-720 (1337)
122 COG5552 Uncharacterized conser 78.9 5.6 0.00012 32.1 5.3 47 75-121 1-47 (88)
123 KOG0724 Zuotin and related mol 77.4 2 4.4E-05 44.5 3.2 52 89-140 4-60 (335)
124 PF13446 RPT: A repeated domai 76.8 4.9 0.00011 31.0 4.5 44 78-131 6-49 (62)
125 cd03031 GRX_GRX_like Glutaredo 75.8 2.3 5E-05 39.0 2.8 25 223-253 100-124 (147)
126 TIGR00310 ZPR1_znf ZPR1 zinc f 73.5 17 0.00037 34.9 8.2 75 241-315 2-100 (192)
127 KOG2824 Glutaredoxin-related p 73.0 3.7 8.1E-05 41.3 3.6 38 240-292 230-275 (281)
128 TIGR00630 uvra excinuclease AB 72.0 2.2 4.8E-05 50.3 2.0 21 412-432 854-875 (924)
129 TIGR00340 zpr1_rel ZPR1-relate 71.1 22 0.00047 33.3 8.1 25 364-392 73-98 (163)
130 PF10041 DUF2277: Uncharacteri 70.9 15 0.00033 29.8 5.9 47 75-121 1-47 (78)
131 PRK04023 DNA polymerase II lar 70.1 2.3 5.1E-05 49.6 1.7 65 205-290 609-674 (1121)
132 smart00709 Zpr1 Duplicated dom 67.0 25 0.00053 32.8 7.5 36 241-276 2-40 (160)
133 TIGR00630 uvra excinuclease AB 66.6 2.3 5E-05 50.1 0.7 27 267-293 738-773 (924)
134 smart00709 Zpr1 Duplicated dom 64.1 33 0.00072 31.9 7.8 25 364-392 76-100 (160)
135 PRK03564 formate dehydrogenase 63.3 7.5 0.00016 40.1 3.6 9 223-231 188-196 (309)
136 PRK00349 uvrA excinuclease ABC 62.6 4.2 9E-05 48.2 1.8 21 412-432 856-877 (943)
137 PF03833 PolC_DP2: DNA polymer 61.9 2.6 5.6E-05 48.4 0.0 51 223-293 656-706 (900)
138 cd03031 GRX_GRX_like Glutaredo 61.5 10 0.00022 34.9 3.8 37 240-291 100-145 (147)
139 COG1198 PriA Primosomal protei 59.6 6.1 0.00013 45.3 2.4 52 220-288 433-484 (730)
140 PRK00349 uvrA excinuclease ABC 59.5 5.9 0.00013 46.9 2.4 27 267-293 740-775 (943)
141 TIGR03655 anti_R_Lar restricti 58.6 15 0.00032 27.5 3.7 37 240-277 2-38 (53)
142 PRK05978 hypothetical protein; 56.6 4.9 0.00011 37.0 0.8 26 241-273 35-60 (148)
143 PRK00564 hypA hydrogenase nick 53.0 36 0.00077 29.9 5.7 10 220-229 69-78 (117)
144 PRK00635 excinuclease ABC subu 53.0 7.7 0.00017 48.8 2.0 24 405-431 1721-1745(1809)
145 PF03589 Antiterm: Antitermina 51.9 3.9 8.5E-05 34.7 -0.5 37 241-277 7-44 (95)
146 PRK14873 primosome assembly pr 51.4 12 0.00027 42.6 3.2 50 221-288 382-431 (665)
147 TIGR01562 FdhE formate dehydro 50.7 15 0.00034 37.7 3.4 17 94-110 100-116 (305)
148 PF09538 FYDLN_acid: Protein o 49.5 9 0.00019 33.4 1.3 26 221-246 8-33 (108)
149 COG0178 UvrA Excinuclease ATPa 48.8 13 0.00028 43.0 2.7 33 266-300 731-772 (935)
150 COG0178 UvrA Excinuclease ATPa 47.4 13 0.00029 42.9 2.6 35 240-278 731-766 (935)
151 TIGR00595 priA primosomal prot 46.0 13 0.00027 41.1 2.1 53 220-289 211-263 (505)
152 PRK14559 putative protein seri 45.6 11 0.00024 42.7 1.7 48 223-287 2-49 (645)
153 PF07709 SRR: Seven Residue Re 45.5 12 0.00026 20.4 0.9 13 118-130 2-14 (14)
154 PF04216 FdhE: Protein involve 44.6 11 0.00025 38.2 1.4 11 236-246 194-204 (290)
155 PF07092 DUF1356: Protein of u 43.1 8.9 0.00019 37.9 0.3 14 240-253 39-52 (238)
156 PRK05580 primosome assembly pr 42.3 14 0.00031 42.1 1.9 50 222-288 381-430 (679)
157 PF14687 DUF4460: Domain of un 41.4 44 0.00096 29.2 4.4 45 87-131 4-53 (112)
158 PF07151 DUF1391: Protein of u 40.2 14 0.00029 26.7 0.8 13 487-499 36-48 (49)
159 PF03367 zf-ZPR1: ZPR1 zinc-fi 39.4 44 0.00096 31.1 4.4 25 364-392 77-102 (161)
160 PRK12380 hydrogenase nickel in 39.1 59 0.0013 28.4 4.8 8 268-275 89-96 (113)
161 PRK00635 excinuclease ABC subu 39.0 11 0.00025 47.4 0.4 27 267-293 1609-1644(1809)
162 TIGR02300 FYDLN_acid conserved 38.5 17 0.00036 32.5 1.3 27 221-247 8-34 (129)
163 PF07191 zinc-ribbons_6: zinc- 37.3 44 0.00095 26.8 3.4 50 224-287 3-58 (70)
164 TIGR00310 ZPR1_znf ZPR1 zinc f 37.2 2E+02 0.0042 27.7 8.5 25 364-392 75-100 (192)
165 PRK12336 translation initiatio 37.1 1.5E+02 0.0033 28.6 7.8 13 266-278 120-132 (201)
166 cd02639 R3H_RRM R3H domain of 36.6 52 0.0011 25.5 3.6 27 410-436 17-43 (60)
167 KOG2724 Nuclear pore complex c 36.3 33 0.00072 36.6 3.2 83 329-412 371-455 (487)
168 PF08774 VRR_NUC: VRR-NUC doma 36.2 50 0.0011 27.6 3.9 42 392-433 45-89 (100)
169 PF04246 RseC_MucC: Positive r 36.0 44 0.00096 29.8 3.7 21 295-315 42-62 (135)
170 PF07092 DUF1356: Protein of u 35.2 15 0.00033 36.4 0.5 15 266-280 39-53 (238)
171 PF07295 DUF1451: Protein of u 35.2 33 0.00071 31.5 2.7 39 231-277 104-142 (146)
172 PRK14051 negative regulator Gr 33.6 1.2E+02 0.0026 26.4 5.6 70 327-397 48-119 (123)
173 PF10365 DUF2436: Domain of un 32.1 66 0.0014 29.3 4.0 36 370-409 96-139 (161)
174 TIGR00100 hypA hydrogenase nic 31.8 1E+02 0.0023 26.9 5.2 9 267-275 88-96 (115)
175 PF13453 zf-TFIIB: Transcripti 31.6 34 0.00074 24.1 1.7 8 266-273 20-27 (41)
176 PF14353 CpXC: CpXC protein 31.1 27 0.00058 30.8 1.4 11 266-276 39-49 (128)
177 PRK00464 nrdR transcriptional 29.8 54 0.0012 30.4 3.2 35 241-275 2-38 (154)
178 PF01155 HypA: Hydrogenase exp 29.0 71 0.0015 27.8 3.7 13 220-232 68-80 (113)
179 TIGR00757 RNaseEG ribonuclease 28.9 33 0.00071 36.9 1.8 13 266-278 391-403 (414)
180 PRK03681 hypA hydrogenase nick 27.9 65 0.0014 28.2 3.2 10 220-229 68-77 (114)
181 PF11983 DUF3484: Domain of un 27.5 94 0.002 25.1 3.8 20 468-487 52-71 (73)
182 PF09855 DUF2082: Nucleic-acid 27.3 84 0.0018 24.7 3.4 8 266-273 37-44 (64)
183 COG1241 MCM2 Predicted ATPase 26.6 1E+03 0.022 27.6 13.1 28 306-333 175-202 (682)
184 PF12991 DUF3875: Domain of un 26.3 72 0.0016 24.3 2.7 23 403-425 26-50 (54)
185 COG1198 PriA Primosomal protei 25.8 40 0.00087 38.9 1.9 41 221-274 443-484 (730)
186 COG5349 Uncharacterized protei 25.7 20 0.00042 31.8 -0.4 25 241-272 23-47 (126)
187 PRK14873 primosome assembly pr 25.5 48 0.001 37.9 2.5 42 220-275 390-432 (665)
188 KOG1705 Uncharacterized conser 25.4 18 0.00038 30.4 -0.7 54 219-286 17-76 (110)
189 PRK05580 primosome assembly pr 25.3 42 0.00092 38.4 2.0 43 220-275 388-431 (679)
190 PF08792 A2L_zn_ribbon: A2L zi 25.1 56 0.0012 22.2 1.8 14 239-252 3-16 (33)
191 PF01846 FF: FF domain; Inter 24.8 1.3E+02 0.0027 21.8 3.9 42 93-140 1-50 (51)
192 PHA01735 hypothetical protein 24.2 36 0.00078 27.1 0.8 10 489-498 36-45 (76)
193 PF10080 DUF2318: Predicted me 24.1 1.5E+02 0.0033 25.5 4.7 21 266-286 36-59 (102)
194 PF13719 zinc_ribbon_5: zinc-r 23.8 51 0.0011 22.8 1.4 7 266-272 26-32 (37)
195 KOG3442 Uncharacterized conser 23.7 1.2E+02 0.0026 27.1 4.0 54 78-134 60-113 (132)
196 KOG0714 Molecular chaperone (D 23.7 12 0.00026 36.9 -2.5 58 75-144 96-153 (306)
197 PF10080 DUF2318: Predicted me 23.3 55 0.0012 28.2 1.9 23 223-245 36-58 (102)
198 COG5435 Uncharacterized conser 23.3 1.3E+02 0.0029 27.6 4.4 32 403-434 108-139 (147)
199 cd00084 HMG-box High Mobility 23.3 1.5E+02 0.0032 22.0 4.2 42 95-140 12-53 (66)
200 PRK11032 hypothetical protein; 23.2 74 0.0016 29.7 2.8 16 93-108 3-18 (160)
201 cd06007 R3H_DEXH_helicase R3H 23.2 1.1E+02 0.0025 23.5 3.4 27 410-436 16-42 (59)
202 smart00276 GLECT Galectin. Gal 22.9 1.1E+02 0.0024 26.8 3.9 42 376-417 3-49 (128)
203 PF09862 DUF2089: Protein of u 22.9 72 0.0016 28.1 2.5 19 242-272 1-19 (113)
204 COG3128 PiuC Uncharacterized i 22.8 2.9E+02 0.0063 26.6 6.7 84 343-432 113-197 (229)
205 smart00440 ZnF_C2C2 C2C2 Zinc 21.7 1.6E+02 0.0034 20.8 3.6 13 241-253 2-14 (40)
206 PRK00762 hypA hydrogenase nick 21.6 2.4E+02 0.0052 25.0 5.7 9 220-229 68-76 (124)
207 PF07739 TipAS: TipAS antibiot 21.2 1.6E+02 0.0036 24.8 4.5 52 84-143 51-104 (118)
208 PF14205 Cys_rich_KTR: Cystein 21.1 1.3E+02 0.0028 23.0 3.2 13 281-293 30-42 (55)
209 cd02641 R3H_Smubp-2_like R3H d 21.0 1.2E+02 0.0027 23.3 3.3 26 411-436 18-43 (60)
210 PF12387 Peptidase_C74: Pestiv 20.7 55 0.0012 30.8 1.5 9 242-250 178-186 (200)
211 PRK14714 DNA polymerase II lar 20.6 56 0.0012 39.7 1.8 35 239-288 667-701 (1337)
212 PF01096 TFIIS_C: Transcriptio 20.5 1.5E+02 0.0033 20.7 3.3 15 241-255 2-16 (39)
213 PRK11712 ribonuclease G; Provi 20.4 51 0.0011 36.3 1.4 26 83-108 139-164 (489)
214 cd02640 R3H_NRF R3H domain of 20.2 1.4E+02 0.003 23.1 3.4 27 410-436 17-43 (60)
215 cd01388 SOX-TCF_HMG-box SOX-TC 20.2 1.9E+02 0.0041 22.6 4.3 41 96-140 14-54 (72)
216 PF08271 TF_Zn_Ribbon: TFIIB z 20.1 76 0.0016 22.5 1.8 9 241-249 2-10 (43)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-103 Score=796.67 Aligned_cols=348 Identities=47% Similarity=0.858 Sum_probs=322.3
Q ss_pred ccCcCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhcchhhhhhhcccccccCccccc-C
Q 010831 74 CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTV-G 151 (499)
Q Consensus 74 ~~~~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~-~~~~~~~f~~i~~AY~vLsd~~kR~~YD~~G~~~~~~~~-~ 151 (499)
++.+|||+||||+++||.+||||||||||++||||+|+ +++|+++|++|+|||||||||+||++||+||++++++++ +
T Consensus 1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~g 80 (371)
T COG0484 1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFG 80 (371)
T ss_pred CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcC
Confidence 36789999999999999999999999999999999999 789999999999999999999999999999999997332 2
Q ss_pred C-CCCCCccCCCCccccccCCCCCCCCCCCCCCCCcccccccccCcceEEeeeecccccccceeeeeecceeeecccccC
Q 010831 152 G-GSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTG 230 (499)
Q Consensus 152 g-~~~~~~~~~~diF~~fFg~~~gg~~~~~~~~~~~~~~~~~~~g~di~~~l~ltl~ea~~G~~k~i~v~~~~~C~~C~G 230 (499)
+ ++++|+.++.|||++|||+ +.+ ++++++++++|.|+++.|+|||+|||+|++++|.+++.+.|++|+|
T Consensus 81 g~g~~~fgg~~~DIF~~~FgG---g~~-------~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~G 150 (371)
T COG0484 81 GFGFGGFGGDFGDIFEDFFGG---GGG-------GRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHG 150 (371)
T ss_pred CCCcCCCCCCHHHHHHHhhcC---CCc-------ccCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCC
Confidence 2 2233433678999999972 111 1233445789999999999999999999999999999999999999
Q ss_pred cccccCcceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeeccCceEEEeeeeEEEEeCCCCCCCCE
Q 010831 231 TGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSI 310 (499)
Q Consensus 231 sG~~~g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~~G~~ 310 (499)
+|+++++.+.+|++|+|+|++.+.+++ |.|+++++|+.|+|+|++|+++|.+|+|.|++++.++|+|+||||+.+|++
T Consensus 151 sGak~gt~~~tC~tC~G~G~v~~~~~~--g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~ 228 (371)
T COG0484 151 SGAKPGTDPKTCPTCNGSGQVRTVQRT--GFFSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDR 228 (371)
T ss_pred CCCCCCCCCCcCCCCCCcCeEEEEEee--eEEEEEEECCCCccceeECCCCCCCCCCCCeEeeeeEEEEECCCCCccCCE
Confidence 999999999999999999999888887 899999999999999999999999999999999999999999999999999
Q ss_pred EEEcccCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEeeeCHHhhhCCCEEEEeccCCeEeEEeCCCCCCCcEEEe
Q 010831 311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVL 390 (499)
Q Consensus 311 Irl~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~~~l~ip~gtq~g~~~~l 390 (499)
||+.|+|+++++|+++|||||+|.|++|+.|+|+|+|||++++|++++|+||++++|+||||.++|+||+|||+|++++|
T Consensus 229 ir~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~~~l~ip~Gtq~G~~~rl 308 (371)
T COG0484 229 IRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGRVKLKIPAGTQTGEVFRL 308 (371)
T ss_pred EEEecCcccCCCCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCCEEEecCCCCccCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCcEEEEEEEEcCCCCCHHHHHHHHHHHhhc
Q 010831 391 AKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR 434 (499)
Q Consensus 391 ~G~GmP~~~~~~~rGDL~V~~~V~~P~~Ls~~q~~lL~~l~~~~ 434 (499)
+|+|||+.++. .+|||||+|+|++|++|+.+|++||++|++..
T Consensus 309 ~gkG~p~~~~~-~~GDl~v~v~v~~P~~ls~~q~~lL~~~~~~~ 351 (371)
T COG0484 309 RGKGMPKLRSG-GRGDLYVRVKVETPKNLSDEQKELLEEFAKSL 351 (371)
T ss_pred cCCCccccCCC-CcCCEEEEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 99999997754 67999999999999999999999999999966
No 2
>PRK14296 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.4e-86 Score=687.86 Aligned_cols=346 Identities=35% Similarity=0.664 Sum_probs=306.1
Q ss_pred CcCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhcccccccCccccc--CCC
Q 010831 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTV--GGG 153 (499)
Q Consensus 76 ~~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~~~~~~~f~~i~~AY~vLsd~~kR~~YD~~G~~~~~~~~--~g~ 153 (499)
..|||+||||+++|+.+|||+|||+||++||||+|+++.++++|++|++||+|||||+||++||+||+++++.+. +++
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~~~~~~~~~ 82 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDGSSGFSSN 82 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhcCCCCcCcC
Confidence 479999999999999999999999999999999998888999999999999999999999999999998775321 111
Q ss_pred CCCCc-----------cCCCCccccccCCCCCCCCCCCCCCCCcccccccccCcceEEeeeecccccccceeeeeeccee
Q 010831 154 SSAYT-----------TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHL 222 (499)
Q Consensus 154 ~~~~~-----------~~~~diF~~fFg~~~gg~~~~~~~~~~~~~~~~~~~g~di~~~l~ltl~ea~~G~~k~i~v~~~ 222 (499)
++++. .++.|+|++|||+ + ++ +..+..+++|+.+.|.|+|+|+|+|++++|.+++.
T Consensus 83 ~~~~~~~~~~~~~~g~~~f~d~f~~~fgg---g-~~---------~~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~ 149 (372)
T PRK14296 83 FGDFEDLFSNMGSSGFSSFTNIFSDFFGS---N-KS---------DYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLL 149 (372)
T ss_pred CCccccccccccccccccchhhhhhhcCC---C-cc---------CCCCcCCCCCeEEEeeccHHHhhCCeeEEEEEeee
Confidence 11110 0122455555542 1 00 11123578999999999999999999999999999
Q ss_pred eecccccCcccccCcceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeeccCceEEEeeeeEEEEeC
Q 010831 223 ETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVP 302 (499)
Q Consensus 223 ~~C~~C~GsG~~~g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP 302 (499)
+.|+.|+|+|.+.+..+.+|+.|+|+|.++..++.++.++++.++|+.|+|+|+++.++|..|+|.|++.+.++++|.||
T Consensus 150 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip 229 (372)
T PRK14296 150 TNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYLERKKIEVNIP 229 (372)
T ss_pred eccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCCCceEEEEEEEEEEEEC
Confidence 99999999999999999999999999999888877665566678999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcccCCCCCCCCCCccEEEEEEEEeccccccC-CcceEEEeeeCHHhhhCCCEEEEeccCCeEeEEeCCC
Q 010831 303 PGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRD-GIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPG 381 (499)
Q Consensus 303 ~Gv~~G~~Irl~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~-G~DL~~~~~Isl~eAllG~~~~I~tldG~~~l~ip~g 381 (499)
+|+++|++|+|+|+|++++.++.+|||||+|+|++|+.|+|+ |+|||++++|+|.|||||+++.|+||||+++|+||++
T Consensus 230 ~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~tldG~~~v~ip~~ 309 (372)
T PRK14296 230 KGIRPNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKTLDGDIKYKLPKS 309 (372)
T ss_pred CCCCCCCEEEEeccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEeeCCCCCEEEEECCc
Confidence 999999999999999998778889999999999999999995 8999999999999999999999999999989999999
Q ss_pred CCCCcEEEeccCCCCCCCCCCCCCcEEEEEEEEcCCCCCHHHHHHHHHHHhhc
Q 010831 382 TQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR 434 (499)
Q Consensus 382 tq~g~~~~l~G~GmP~~~~~~~rGDL~V~~~V~~P~~Ls~~q~~lL~~l~~~~ 434 (499)
+|||++++|+|+|||...+++.+|||||+|+|+||+.||++|+++|++|++..
T Consensus 310 t~~g~~~ri~GkGmP~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~~l~~~~ 362 (372)
T PRK14296 310 INSNELIIINNKGLYKSINKDKRGDLIIKVNIVVPKNLSKKEKELIEQIYEQT 362 (372)
T ss_pred cCCCcEEEEcCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 99999999999999965445568999999999999999999999999999864
No 3
>PRK14278 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.3e-84 Score=674.65 Aligned_cols=347 Identities=43% Similarity=0.757 Sum_probs=310.1
Q ss_pred CcCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhcccccccCccccc-CCCC
Q 010831 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTV-GGGS 154 (499)
Q Consensus 76 ~~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~~~~~~~f~~i~~AY~vLsd~~kR~~YD~~G~~~~~~~~-~g~~ 154 (499)
..|||+||||+++|+.+|||+|||+||++||||+|++++++++|++|++||+||+||.+|++||+||++...++. ++++
T Consensus 2 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~~~~~g~ 81 (378)
T PRK14278 2 ARDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAGGGGGGF 81 (378)
T ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCccccccCCCCCC
Confidence 479999999999999999999999999999999998878899999999999999999999999999986432211 1111
Q ss_pred C-CCccCCCCccccccCCCCCCCCCCCCCCCCcccccccccCcceEEeeeecccccccceeeeeecceeeecccccCccc
Q 010831 155 S-AYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGA 233 (499)
Q Consensus 155 ~-~~~~~~~diF~~fFg~~~gg~~~~~~~~~~~~~~~~~~~g~di~~~l~ltl~ea~~G~~k~i~v~~~~~C~~C~GsG~ 233 (499)
+ +| .++.|+|++|||++ + ++ .....+..++.|+.+.|.|||+|+|+|+++++.+++.+.|+.|+|+|.
T Consensus 82 ~~~f-~~~~d~f~~ffgg~--g-~~-------~~~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~ 150 (378)
T PRK14278 82 GGGF-GGLGDVFEAFFGGG--A-AS-------RGPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGT 150 (378)
T ss_pred CcCc-CchhHHHHHHhCCC--C-CC-------CCCccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCccC
Confidence 1 12 23457888888731 1 00 011112357899999999999999999999999999999999999999
Q ss_pred ccCcceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeeccCceEEEeeeeEEEEeCCCCCCCCEEEE
Q 010831 234 KMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRV 313 (499)
Q Consensus 234 ~~g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~~G~~Irl 313 (499)
+.+..+.+|+.|+|+|+++..+++++|++++.++|+.|+|+|+++.++|..|+|.|++.+.++++|.||||+++|++|+|
T Consensus 151 ~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~ 230 (378)
T PRK14278 151 AGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDGRVRARREITVKIPAGVGDGMRIRL 230 (378)
T ss_pred CCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCCCceeEecceEEEEEECCCCCCCcEEEE
Confidence 99999999999999999999888999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEeeeCHHhhhCCCEEEEecc-CCeEeEEeCCCCCCCcEEEecc
Q 010831 314 VGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTV-EGISELQVPPGTQPGDVLVLAK 392 (499)
Q Consensus 314 ~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~I~tl-dG~~~l~ip~gtq~g~~~~l~G 392 (499)
+|+|++++.++++|||||+|++++|+.|+|+|+||++++.|+|.+|++|+++.|+|| ++.+.|+||+++++|++++|+|
T Consensus 231 ~g~G~~~~~~~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld~~~i~v~ip~g~~~g~~lrl~g 310 (378)
T PRK14278 231 AAQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSEITIPPGTQPGSVITLRG 310 (378)
T ss_pred ccCcCCCCCCCCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEecCCCCeEEEEeCCCcCCCcEEEECC
Confidence 999999888888999999999999999999999999999999999999999999999 5567999999999999999999
Q ss_pred CCCCCCCCCCCCCcEEEEEEEEcCCCCCHHHHHHHHHHHhhc
Q 010831 393 KGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR 434 (499)
Q Consensus 393 ~GmP~~~~~~~rGDL~V~~~V~~P~~Ls~~q~~lL~~l~~~~ 434 (499)
+|||..+. ..+|||||+|+|+||+.||++|+++|++|+.+.
T Consensus 311 ~G~p~~~~-~~~GDL~V~~~V~~P~~Ls~~qk~~l~~~~~~~ 351 (378)
T PRK14278 311 RGMPHLRS-GGRGDLHAHVEVVVPTRLDHEDIELLRELKALR 351 (378)
T ss_pred CCCCCCCC-CCCCCEEEEEEEEcCCCCCHHHHHHHHHHHhhc
Confidence 99997653 368999999999999999999999999999754
No 4
>PRK14298 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.9e-84 Score=674.35 Aligned_cols=346 Identities=45% Similarity=0.808 Sum_probs=312.6
Q ss_pred CcCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhcccccccCcccccCCC--
Q 010831 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGG-- 153 (499)
Q Consensus 76 ~~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~~~~~~~f~~i~~AY~vLsd~~kR~~YD~~G~~~~~~~~~g~-- 153 (499)
..|||+||||+++|+.+|||+|||+||++||||+|+++.++++|++|++||+||+||.+|++||+||+++++.+++++
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~~ 83 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSAEDI 83 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccccccCcccc
Confidence 469999999999999999999999999999999998888999999999999999999999999999998876432110
Q ss_pred --CCCCccCCCCccccccCCCCCCCCCCCCCCCCcccccccccCcceEEeeeecccccccceeeeeecceeeecccccCc
Q 010831 154 --SSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGT 231 (499)
Q Consensus 154 --~~~~~~~~~diF~~fFg~~~gg~~~~~~~~~~~~~~~~~~~g~di~~~l~ltl~ea~~G~~k~i~v~~~~~C~~C~Gs 231 (499)
.+++ .++.|+|++|||++ + + . . ..+..++.|+.+.|.|+|+|+|+|++++|.+++.+.|+.|+|+
T Consensus 84 ~~~~~~-~~~~d~f~~~Fgg~--~--~-----~--~-~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~ 150 (377)
T PRK14298 84 FRGADF-GGFGDIFEMFFGGG--G--R-----R--G-RMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGT 150 (377)
T ss_pred cccCCc-CcchhhhHhhhcCC--C--c-----c--C-CCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCC
Confidence 0111 23447888888631 1 0 0 0 1123578999999999999999999999999999999999999
Q ss_pred ccccCcceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeeccCceEEEeeeeEEEEeCCCCCCCCEE
Q 010831 232 GAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSIL 311 (499)
Q Consensus 232 G~~~g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~~G~~I 311 (499)
|.+.+..+.+|+.|+|+|+++..+++++|++++.++|+.|+|+|+++.++|..|+|.|++.+.++++|.||||+++|++|
T Consensus 151 G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i 230 (377)
T PRK14298 151 GAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKVRKTRKITVNVPAGADSGLRL 230 (377)
T ss_pred cccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCCCccEEEEEEEEEecCCCCCCCCCEE
Confidence 99999999999999999999998888889998889999999999999999999999999999999999999999999999
Q ss_pred EEcccCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEeeeCHHhhhCCCEEEEeccCCeEeEEeCCCCCCCcEEEec
Q 010831 312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLA 391 (499)
Q Consensus 312 rl~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~~~l~ip~gtq~g~~~~l~ 391 (499)
+|+|+|++++.++++|||||+|+|++|+.|+|+|+|||+++.|+|.|||+|+++.|+||||++.|+||+|+++|++++|+
T Consensus 231 ~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g~~lri~ 310 (377)
T PRK14298 231 KLSGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLYGKVKMNIPPGTQTHSVFRLK 310 (377)
T ss_pred EEecccCCCCCCCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEecCCCCEEEEeCCCcccCCEEEEC
Confidence 99999999877889999999999999999999999999999999999999999999999999899999999999999999
Q ss_pred cCCCCCCCCCCCCCcEEEEEEEEcCCCCCHHHHHHHHHHHhhcC
Q 010831 392 KKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLRN 435 (499)
Q Consensus 392 G~GmP~~~~~~~rGDL~V~~~V~~P~~Ls~~q~~lL~~l~~~~~ 435 (499)
|+|||..+. ..+|||||+|+|.+|+.|+.+|+++|++|+++.+
T Consensus 311 g~G~p~~~~-~~~GDL~V~~~V~~P~~ls~~~~~ll~~l~~~~~ 353 (377)
T PRK14298 311 DKGMPRLHG-HGKGDQLVKVIVKTPTKLTQEQKELLREFDELSN 353 (377)
T ss_pred CCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhcc
Confidence 999997654 3689999999999999999999999999998543
No 5
>PRK14276 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.3e-84 Score=674.71 Aligned_cols=346 Identities=44% Similarity=0.810 Sum_probs=312.4
Q ss_pred CcCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhcccccccCcccccCC---
Q 010831 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG--- 152 (499)
Q Consensus 76 ~~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~~~~~~~f~~i~~AY~vLsd~~kR~~YD~~G~~~~~~~~~g--- 152 (499)
..|||+||||+++|+.+|||+|||+||++||||+|+++.++++|++|++||+||+||.+|++||+||+++++++.++
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~~~~~~~~ 82 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFGGGAG 82 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccCCCCCCCC
Confidence 46999999999999999999999999999999999988899999999999999999999999999999887643211
Q ss_pred CCCCCc-----cCCCCccccccCCCCCCCCCCCCCCCCcccccccccCcceEEeeeecccccccceeeeeecceeeeccc
Q 010831 153 GSSAYT-----TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEV 227 (499)
Q Consensus 153 ~~~~~~-----~~~~diF~~fFg~~~gg~~~~~~~~~~~~~~~~~~~g~di~~~l~ltl~ea~~G~~k~i~v~~~~~C~~ 227 (499)
+.++|. .++.|+|++|||++ + +. +...+..++.|+.+.|.|||+|+|+|++++|.+++.+.|+.
T Consensus 83 ~~~~~~~~~~~~~~~d~f~~~fgg~--~--~~-------~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~ 151 (380)
T PRK14276 83 GFGGFDGSGGFGGFEDIFSSFFGGG--G--AR-------RNPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHT 151 (380)
T ss_pred CCCCccccccccchhhHHHHHhCcc--c--cc-------cCcCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCC
Confidence 111121 23457788888631 1 00 00112357899999999999999999999999999999999
Q ss_pred ccCcccccCcceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeeccCceEEEeeeeEEEEeCCCCCC
Q 010831 228 CTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVST 307 (499)
Q Consensus 228 C~GsG~~~g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~~ 307 (499)
|+|+|...+..+.+|+.|+|+|.++..+++++|++++.++|+.|+|+|+++.++|..|+|.|++.+.++++|.||+|+++
T Consensus 152 C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~ 231 (380)
T PRK14276 152 CNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHEKQAHTVSVKIPAGVET 231 (380)
T ss_pred CcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCCCceEEEEEEEEEEEeCCCccC
Confidence 99999999988999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcccCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEeeeCHHhhhCCCEEEEeccCCeEeEEeCCCCCCCcE
Q 010831 308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDV 387 (499)
Q Consensus 308 G~~Irl~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~~~l~ip~gtq~g~~ 387 (499)
|++|+|+|+|++.+.++++|||||+|+|++|+.|+|+|+|||++++|+|.||++|++++|+|+||+++|+||+|+++|++
T Consensus 232 G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tldg~i~v~ip~g~~~g~~ 311 (380)
T PRK14276 232 GQQIRLQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVHGDVELKIPAGTQTGKK 311 (380)
T ss_pred CcEEEEeccccCCCCCCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEEcCCCcEEEEECCCCCCCCE
Confidence 99999999999987777889999999999999999999999999999999999999999999999989999999999999
Q ss_pred EEeccCCCCCCCCCCCCCcEEEEEEEEcCCCCCHHHHHHHHHHHhh
Q 010831 388 LVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASL 433 (499)
Q Consensus 388 ~~l~G~GmP~~~~~~~rGDL~V~~~V~~P~~Ls~~q~~lL~~l~~~ 433 (499)
++|+|+|||..+. ..+|||||+|+|+||+.|+++|+++|++|++.
T Consensus 312 ~~i~g~G~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~~l~~~~~~ 356 (380)
T PRK14276 312 FRLRGKGAPKLRG-GGNGDQHVTVNIVTPTKLNDAQKEALKAFAKA 356 (380)
T ss_pred EEECCCCcCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 9999999998654 35799999999999999999999999999874
No 6
>PRK14288 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.7e-84 Score=673.14 Aligned_cols=344 Identities=32% Similarity=0.598 Sum_probs=299.9
Q ss_pred cCcCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhcchhhhhhhcccccccCcccccCCC
Q 010831 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGG 153 (499)
Q Consensus 75 ~~~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~-~~~~~~~f~~i~~AY~vLsd~~kR~~YD~~G~~~~~~~~~g~ 153 (499)
|..|||+||||+++||.+|||+|||+||++||||+|+ ++.++++|++|++|||||+||+||++||+||+++++.+.+ +
T Consensus 1 ~~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~~~-~ 79 (369)
T PRK14288 1 MELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQAGA-S 79 (369)
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccCCC-C
Confidence 3579999999999999999999999999999999998 4678999999999999999999999999999987763211 1
Q ss_pred CCCCccCCCCccccccCCCCCCCCCCCCCCCCcccccccccCcceEEeeeecccccccceeeeeecceeeecccccCccc
Q 010831 154 SSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGA 233 (499)
Q Consensus 154 ~~~~~~~~~diF~~fFg~~~gg~~~~~~~~~~~~~~~~~~~g~di~~~l~ltl~ea~~G~~k~i~v~~~~~C~~C~GsG~ 233 (499)
.++| .++|+.|++||+..||+. +. ...+.+..+++|+.+.|.|+|+|+|+|++++|.+++.+.|+.|+|+|.
T Consensus 80 ~~~~-~~~f~~~~~~F~~~fg~g-~~------~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~ 151 (369)
T PRK14288 80 QSDF-SDFFEDLGSFFEDAFGFG-AR------GSKRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGA 151 (369)
T ss_pred cccc-ccchhhHHHHHHhhcCCC-Cc------ccCcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCccc
Confidence 1122 133444445554333211 10 011122357899999999999999999999999999999999999999
Q ss_pred ccCcceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeeccCceEEEeeeeEEEEeCCCCCCCCEEEE
Q 010831 234 KMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRV 313 (499)
Q Consensus 234 ~~g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~~G~~Irl 313 (499)
..+ .+.+|+.|+|+|.++..+ |++++.++|+.|+|+|+++.++|..|+|.|++.+.++++|.||+|+++|++|+|
T Consensus 152 ~~~-~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~~i~l 226 (369)
T PRK14288 152 KDK-ALETCKQCNGQGQVFMRQ----GFMSFAQTCGACQGKGKIIKTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVL 226 (369)
T ss_pred CCC-CCcCCCCCCCCcEEEEEe----ceEEEEEecCCCCCCceEccccCccCCCcceEEEEEEEEEecCCCCCCCCEEEE
Confidence 876 678999999999876543 677888899999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEeeeCHHhhhCCCEEEEeccCCe-EeEEeCCCCCCCcEEEecc
Q 010831 314 VGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPGTQPGDVLVLAK 392 (499)
Q Consensus 314 ~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~-~~l~ip~gtq~g~~~~l~G 392 (499)
+|+|++.+ ++.+|||||+|+|++|+.|+|+|+|||++++|+|.|||||+++.|+||||+ ++|+||+++|||++++|+|
T Consensus 227 ~g~G~~~~-~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~i~i~~~~~~g~~~~i~g 305 (369)
T PRK14288 227 KNKGNEYE-KGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRNARDRQTFAFRN 305 (369)
T ss_pred ccCccCCC-CCCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEEEEeCCCCCCCcEEEEcC
Confidence 99999966 578999999999999999999999999999999999999999999999997 7999999999999999999
Q ss_pred CCCCCCCCCCCCCcEEEEEEEEcCCCCCHHHHHHHHHHHhhc
Q 010831 393 KGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR 434 (499)
Q Consensus 393 ~GmP~~~~~~~rGDL~V~~~V~~P~~Ls~~q~~lL~~l~~~~ 434 (499)
+|||..+. ..+|||||+|+|++|+.|+++|+++|++|++.+
T Consensus 306 ~G~p~~~~-~~~GDL~v~~~v~~P~~ls~~q~~~l~~~~~~~ 346 (369)
T PRK14288 306 EGVKHPES-SYRGSLIVELQVIYPKSLNKEQQELLEKLHASF 346 (369)
T ss_pred CCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 99997653 358999999999999999999999999999753
No 7
>PRK14287 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=8.2e-84 Score=671.03 Aligned_cols=346 Identities=43% Similarity=0.840 Sum_probs=312.7
Q ss_pred CcCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhcccccccCcccccCC-CC
Q 010831 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG-GS 154 (499)
Q Consensus 76 ~~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~~~~~~~f~~i~~AY~vLsd~~kR~~YD~~G~~~~~~~~~g-~~ 154 (499)
..|||+||||+++|+.+|||+|||+||++||||+|++++++++|++|++||+||+||++|++||+||++++..+.++ +.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~~~~~~ 82 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGFGGGGA 82 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccccccCCCCC
Confidence 46999999999999999999999999999999999877889999999999999999999999999999887643211 11
Q ss_pred CCCccCCCCccccccCCCCCCCCCCCCCCCCcccccccccCcceEEeeeecccccccceeeeeecceeeecccccCcccc
Q 010831 155 SAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAK 234 (499)
Q Consensus 155 ~~~~~~~~diF~~fFg~~~gg~~~~~~~~~~~~~~~~~~~g~di~~~l~ltl~ea~~G~~k~i~v~~~~~C~~C~GsG~~ 234 (499)
++|. ++.|+|+.|||++ + +. +. ..+..+|+|+.+.|.|+|+|+|+|++++|.+++.+.|+.|+|+|..
T Consensus 83 ~~f~-~~~d~f~~~fgg~--~--~~------~~-~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~ 150 (371)
T PRK14287 83 GDFG-GFSDIFDMFFGGG--G--GR------RN-PNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAK 150 (371)
T ss_pred cccc-chHHHHHhhhccc--c--CC------CC-CCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccC
Confidence 2221 3457888888731 1 00 00 1123478999999999999999999999999999999999999999
Q ss_pred cCcceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeeccCceEEEeeeeEEEEeCCCCCCCCEEEEc
Q 010831 235 MGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVV 314 (499)
Q Consensus 235 ~g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~~G~~Irl~ 314 (499)
.+..+.+|+.|+|+|+++..+++++|++++.++|+.|+|+|+++.++|..|.|.|.+.+.++++|.||+|+++|++|+|+
T Consensus 151 ~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~ 230 (371)
T PRK14287 151 PGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVS 230 (371)
T ss_pred CCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCCCeeEEeeeEEEEEEECCcCCCCCEEEEc
Confidence 98889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEeeeCHHhhhCCCEEEEeccCCeEeEEeCCCCCCCcEEEeccCC
Q 010831 315 GEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKG 394 (499)
Q Consensus 315 G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~~~l~ip~gtq~g~~~~l~G~G 394 (499)
|+|++++.++.+|||||+|+|++|+.|+|+|+|||+++.|+|.+|++|++++|+|+||++.|+||+|+++|++++|+|+|
T Consensus 231 G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g~~~ri~g~G 310 (371)
T PRK14287 231 GQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGKVKLKIPAGTQTGTSFRLRGKG 310 (371)
T ss_pred cCCcCCCCCCCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEEcCCCCEEEEECCCccCCcEEEEcCCC
Confidence 99999877778999999999999999999999999999999999999999999999999899999999999999999999
Q ss_pred CCCCCCCCCCCcEEEEEEEEcCCCCCHHHHHHHHHHHhhc
Q 010831 395 APKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR 434 (499)
Q Consensus 395 mP~~~~~~~rGDL~V~~~V~~P~~Ls~~q~~lL~~l~~~~ 434 (499)
||..++. .+|||||+|+|.+|+.|+.+|+++|++|+++.
T Consensus 311 ~p~~~~~-~~GDL~V~~~v~~P~~l~~~q~~ll~~l~~~~ 349 (371)
T PRK14287 311 VPNVHGR-GQGDQHVQVRVVTPKNLTEKEKELMREFAGMS 349 (371)
T ss_pred ccCCCCC-CCCCEEEEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence 9976543 58999999999999999999999999999753
No 8
>PRK14277 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=7.4e-84 Score=674.90 Aligned_cols=351 Identities=42% Similarity=0.819 Sum_probs=312.2
Q ss_pred cCcCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhcchhhhhhhcccccccCccccc-CC
Q 010831 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTV-GG 152 (499)
Q Consensus 75 ~~~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~-~~~~~~f~~i~~AY~vLsd~~kR~~YD~~G~~~~~~~~-~g 152 (499)
+..|||+||||+++|+.+|||+|||+||++||||+|++ +.++++|++|++||+||+||.+|+.||+||+++++.+. ++
T Consensus 3 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~ 82 (386)
T PRK14277 3 AKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGFGQ 82 (386)
T ss_pred CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcccccccccccc
Confidence 35799999999999999999999999999999999984 67889999999999999999999999999998775321 10
Q ss_pred ---CCCC-----Cc---cCCCCccccccCCCCCCCCCCCCCCCCcccccccccCcceEEeeeecccccccceeeeeecce
Q 010831 153 ---GSSA-----YT---TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSH 221 (499)
Q Consensus 153 ---~~~~-----~~---~~~~diF~~fFg~~~gg~~~~~~~~~~~~~~~~~~~g~di~~~l~ltl~ea~~G~~k~i~v~~ 221 (499)
+.++ +. .++.|+|++||+..+|+.+ ..+..+..++.|+++.|.|+|+|+|+|+++++.+++
T Consensus 83 ~~~~~~g~~~~~~~~~~~~~~d~f~~~F~~~fgg~~--------~~~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~r 154 (386)
T PRK14277 83 GGFGQGGFGGGGFDFDFGGFGDIFEDIFGDFFGTGR--------RRAETGPQKGADIRYDLELTFEEAAFGTEKEIEVER 154 (386)
T ss_pred CCcCCCCccccCccccccchhHHHHHhhcccccCCC--------cCCCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEEe
Confidence 0011 11 1233678888874332210 001112357899999999999999999999999999
Q ss_pred eeecccccCcccccCcceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeeccCceEEEeeeeEEEEe
Q 010831 222 LETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKV 301 (499)
Q Consensus 222 ~~~C~~C~GsG~~~g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~I 301 (499)
.+.|+.|+|+|...+..+.+|+.|+|+|+++..+++++|++++.++|+.|+|+|+++.++|..|+|.|++.+.++++|.|
T Consensus 155 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~I 234 (386)
T PRK14277 155 FEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIRRRRKIKVNI 234 (386)
T ss_pred eccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCCCCCcEEeeeeEEEEec
Confidence 99999999999999988999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEcccCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEeeeCHHhhhCCCEEEEeccCCeEeEEeCCC
Q 010831 302 PPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPG 381 (499)
Q Consensus 302 P~Gv~~G~~Irl~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~~~l~ip~g 381 (499)
|+|+++|++|+|+|+|++.+.++.+|||||+|+|++|+.|+|+|+|||++++|+|.|||+|+++.|+||||++.|+||++
T Consensus 235 p~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g 314 (386)
T PRK14277 235 PAGIDDGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLDGKVKFTIPEG 314 (386)
T ss_pred CCCccCCcEEEEccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEEcCCCCEEEEECCC
Confidence 99999999999999999977777899999999999999999999999999999999999999999999999989999999
Q ss_pred CCCCcEEEeccCCCCCCCCCCCCCcEEEEEEEEcCCCCCHHHHHHHHHHHhhc
Q 010831 382 TQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR 434 (499)
Q Consensus 382 tq~g~~~~l~G~GmP~~~~~~~rGDL~V~~~V~~P~~Ls~~q~~lL~~l~~~~ 434 (499)
+++|++++|+|+|||..+.+ .+|||||+|+|+||+.|+++|+++|++|+++.
T Consensus 315 ~~~g~~~ri~g~G~p~~~~~-~~GDL~v~~~V~~P~~Ls~~qk~~l~~l~~~~ 366 (386)
T PRK14277 315 TQTGTKFRLRGKGIPHLRGR-GRGDQIVKVYIEVPKKLTEKQKELLREFEKLS 366 (386)
T ss_pred CCCCCEEEECCCCCCCCCCC-CCCCEEEEEEEEeCCCCCHHHHHHHHHHHhhc
Confidence 99999999999999976543 68999999999999999999999999999754
No 9
>PRK14280 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.7e-83 Score=670.09 Aligned_cols=347 Identities=46% Similarity=0.856 Sum_probs=312.9
Q ss_pred CcCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhcccccccCcccccCC-CC
Q 010831 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG-GS 154 (499)
Q Consensus 76 ~~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~~~~~~~f~~i~~AY~vLsd~~kR~~YD~~G~~~~~~~~~g-~~ 154 (499)
..|||+||||+++|+.+|||+|||+||++||||+|+++.++++|++|++||+||+||.+|++||+||+++++.+.++ ++
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~~ 82 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGGGGF 82 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCcCCCCC
Confidence 36999999999999999999999999999999999888899999999999999999999999999999887643211 10
Q ss_pred C--CCc--cCCCCccccccCCCCCCCCCCCCCCCCcccccccccCcceEEeeeecccccccceeeeeecceeeecccccC
Q 010831 155 S--AYT--TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTG 230 (499)
Q Consensus 155 ~--~~~--~~~~diF~~fFg~~~gg~~~~~~~~~~~~~~~~~~~g~di~~~l~ltl~ea~~G~~k~i~v~~~~~C~~C~G 230 (499)
+ +|. +++.|+|+.|||++ + . +....+..+++|+.+.|.|||+|+|+|++++|.+++.+.|+.|+|
T Consensus 83 ~~~~~~~~~~~~d~f~~~fgg~--~--~-------~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G 151 (376)
T PRK14280 83 GGGDFGGGFGFEDIFSSFFGGG--G--R-------RRDPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHG 151 (376)
T ss_pred CCCCccccccchhhHHHHhCCc--c--c-------cCcccccccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCC
Confidence 1 121 14457888888631 1 0 000112357899999999999999999999999999999999999
Q ss_pred cccccCcceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeeccCceEEEeeeeEEEEeCCCCCCCCE
Q 010831 231 TGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSI 310 (499)
Q Consensus 231 sG~~~g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~~G~~ 310 (499)
+|...+..+.+|+.|+|+|.++..+++++|++++.++|+.|+|+|+++.++|..|+|.|++.+.++++|.||+|+++|++
T Consensus 152 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~ 231 (376)
T PRK14280 152 SGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKVRKRKKINVKIPAGVDNGQQ 231 (376)
T ss_pred cccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCCCceEEEEEEEEEEEeCCCCcCCcE
Confidence 99999988999999999999998889999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEeeeCHHhhhCCCEEEEeccCCeEeEEeCCCCCCCcEEEe
Q 010831 311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVL 390 (499)
Q Consensus 311 Irl~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~~~l~ip~gtq~g~~~~l 390 (499)
|+|+|+|++.+.++.+|||||+|+|++|+.|+|+|+|||+++.|+|.|||+|+++.|+||||++.|+||+++++|++++|
T Consensus 232 i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~g~~~g~~~~i 311 (376)
T PRK14280 232 IRVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLHGKVKLKIPAGTQTGTQFRL 311 (376)
T ss_pred EEEcccccCCCCCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCceEEEEECCCCCCCcEEEE
Confidence 99999999988778899999999999999999999999999999999999999999999999989999999999999999
Q ss_pred ccCCCCCCCCCCCCCcEEEEEEEEcCCCCCHHHHHHHHHHHhhc
Q 010831 391 AKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR 434 (499)
Q Consensus 391 ~G~GmP~~~~~~~rGDL~V~~~V~~P~~Ls~~q~~lL~~l~~~~ 434 (499)
+|+|||..+. ..+|||||+|+|.+|+.||++|+++|++|+++.
T Consensus 312 ~g~G~p~~~~-~~~GDL~v~~~v~~P~~Ls~~q~~~l~~l~~~~ 354 (376)
T PRK14280 312 KGKGVPNVRG-YGQGDQYVVVRVVTPTKLTDRQKELLREFAELS 354 (376)
T ss_pred cCCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 9999997654 368999999999999999999999999998753
No 10
>PRK14297 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.8e-83 Score=669.65 Aligned_cols=349 Identities=44% Similarity=0.831 Sum_probs=312.6
Q ss_pred CcCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhcchhhhhhhcccccccCcccccC---
Q 010831 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG--- 151 (499)
Q Consensus 76 ~~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~-~~~~~~f~~i~~AY~vLsd~~kR~~YD~~G~~~~~~~~~--- 151 (499)
..|||+||||+++|+.+|||+|||+||++||||+|+. +.++++|++|++||+||+||.+|++||+||+++++.+.+
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~~~~~ 82 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAGGFGS 82 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccCCCCC
Confidence 4699999999999999999999999999999999974 578899999999999999999999999999988763211
Q ss_pred CCCCCCc----cCCCCccccccCCCCCCCCCCCCCCCCcccccccccCcceEEeeeecccccccceeeeeecceeeeccc
Q 010831 152 GGSSAYT----TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEV 227 (499)
Q Consensus 152 g~~~~~~----~~~~diF~~fFg~~~gg~~~~~~~~~~~~~~~~~~~g~di~~~l~ltl~ea~~G~~k~i~v~~~~~C~~ 227 (499)
+++++|. .++.|+|++|||+++++ . ++ +..+..+++|+++.|.|||+|+|+|++++|.+++.+.|+.
T Consensus 83 ~~~~~~~~~~~~~~~d~f~~~fgg~~g~---~-----~~-~~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~ 153 (380)
T PRK14297 83 GGFGGFDFSDMGGFGDIFDSFFGGGFGS---S-----SR-RRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCET 153 (380)
T ss_pred CCCCCcCcccccchhHHHHHHhccCccc---c-----cc-ccCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCC
Confidence 1112221 13457888888742111 0 00 1112357899999999999999999999999999999999
Q ss_pred ccCcccccCcceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeeccCceEEEeeeeEEEEeCCCCCC
Q 010831 228 CTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVST 307 (499)
Q Consensus 228 C~GsG~~~g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~~ 307 (499)
|+|+|..++..+.+|+.|+|+|+++..+++++|++++.++|+.|+|+|.++.++|..|+|.|++.+.++++|.||+|+++
T Consensus 154 C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~ 233 (380)
T PRK14297 154 CNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGKGKVRKNRKIKVNVPAGVDT 233 (380)
T ss_pred cccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCCCCeEEEeEeEEEEEeCCCCCC
Confidence 99999999988999999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcccCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEeeeCHHhhhCCCEEEEeccCCeEeEEeCCCCCCCcE
Q 010831 308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDV 387 (499)
Q Consensus 308 G~~Irl~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~~~l~ip~gtq~g~~ 387 (499)
|++|+|.|+|++++.++.+|||||+|+|++|+.|+|+|+||++++.|+|.+||+|+++.|+|+||+++|+||+|+++|++
T Consensus 234 G~~I~l~g~G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~~~v~ip~g~~~g~~ 313 (380)
T PRK14297 234 GNVIPLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVDGEVKYEVPAGTQPGTV 313 (380)
T ss_pred CcEEEEecCccCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEEcCCCcEEEEECCCcCCCCE
Confidence 99999999999987778899999999999999999999999999999999999999999999999989999999999999
Q ss_pred EEeccCCCCCCCCCCCCCcEEEEEEEEcCCCCCHHHHHHHHHHHhhc
Q 010831 388 LVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR 434 (499)
Q Consensus 388 ~~l~G~GmP~~~~~~~rGDL~V~~~V~~P~~Ls~~q~~lL~~l~~~~ 434 (499)
++|+|+|||..+. ..+|||||+|+|+||+.|+++|+++|++|+.+.
T Consensus 314 ~ri~g~G~p~~~~-~~~GDL~v~~~v~~P~~ls~~q~~~l~~~~~~~ 359 (380)
T PRK14297 314 FRLKGKGVPRVNS-TGRGNQYVTVIVDIPKKLNSKQKEALTMFMEAS 359 (380)
T ss_pred EEEcCCCcCCCCC-CCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 9999999997653 468999999999999999999999999999754
No 11
>PRK14286 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.9e-83 Score=664.82 Aligned_cols=348 Identities=45% Similarity=0.832 Sum_probs=307.1
Q ss_pred CcCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhcchhhhhhhcccccccCcccccCC-C
Q 010831 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG-G 153 (499)
Q Consensus 76 ~~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~-~~~~~~~f~~i~~AY~vLsd~~kR~~YD~~G~~~~~~~~~g-~ 153 (499)
..|||+||||+++|+.+|||+|||+||++||||+|+ +++++++|++|++||+||+||++|++||+||+++++.+.++ +
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~ 82 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAGGFG 82 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhccccCCCC
Confidence 469999999999999999999999999999999997 46789999999999999999999999999999887642111 1
Q ss_pred CCC---Cc---cCCCCccccccCCCCCCCCCCCCCCCCcccccccccCcceEEeeeecccccccceeeeeecceeeeccc
Q 010831 154 SSA---YT---TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEV 227 (499)
Q Consensus 154 ~~~---~~---~~~~diF~~fFg~~~gg~~~~~~~~~~~~~~~~~~~g~di~~~l~ltl~ea~~G~~k~i~v~~~~~C~~ 227 (499)
.++ |. .++.|+|++|||++.++. . . ..+..+..++.|+++.|.|+|+|+|+|++++|.+++.+.|++
T Consensus 83 ~~~~~~~~~~~~~~~d~f~~ffgg~~~~~--~---~--~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~ 155 (372)
T PRK14286 83 QGAYTDFSDIFGDFGDIFGDFFGGGRGGG--S---G--GGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVD 155 (372)
T ss_pred CCCcccccccccchhhHHHHhhCCCccCC--C---c--ccccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCC
Confidence 111 11 234478888887421110 0 0 011122357899999999999999999999999999999999
Q ss_pred ccCcccccCcceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeeccCceEEEeeeeEEEEeCCCCCC
Q 010831 228 CTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVST 307 (499)
Q Consensus 228 C~GsG~~~g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~~ 307 (499)
|+|+|...+..+.+|+.|+|+|.++..+ |++++.++|+.|+|+|+++.++|..|+|.|++.+.++++|+||+|+++
T Consensus 156 C~G~G~~~~~~~~~C~~C~G~G~v~~~~----G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~ 231 (372)
T PRK14286 156 CNGSGASKGSSPTTCPDCGGSGQIRRTQ----GFFSVATTCPTCRGKGTVISNPCKTCGGQGLQEKRRTINIKIPPGVET 231 (372)
T ss_pred CcCCCcCCCCCCccCCCCcCeEEEEEEe----ceEEEEEeCCCCCceeeEecccCCCCCCCcEEecceEEEEEECCCCCC
Confidence 9999999998889999999999886643 788888999999999999999999999999999999999999999999
Q ss_pred CCEEEEcccCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEeeeCHHhhhCCCEEEEeccCCe-EeEEeCCCCCCCc
Q 010831 308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPGTQPGD 386 (499)
Q Consensus 308 G~~Irl~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~-~~l~ip~gtq~g~ 386 (499)
|++|+|+|+|++.++++.+|||||+|+|++|+.|+|+|+||++++.|+|.+||+|+++.|+||||+ ++|+||+++++|+
T Consensus 232 G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~i~v~ip~g~~~g~ 311 (372)
T PRK14286 232 GSRLKVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPEGTESGQ 311 (372)
T ss_pred CCEEEECCccccCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCEEEEEeCCccCCCc
Confidence 999999999999887778899999999999999999999999999999999999999999999997 7999999999999
Q ss_pred EEEeccCCCCCCCCCCCCCcEEEEEEEEcCCCCCHHHHHHHHHHHhhcC
Q 010831 387 VLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLRN 435 (499)
Q Consensus 387 ~~~l~G~GmP~~~~~~~rGDL~V~~~V~~P~~Ls~~q~~lL~~l~~~~~ 435 (499)
+++|+|+|||..+. ..+|||||+|+|.||+.|+++|+++|++|++..+
T Consensus 312 ~~ri~G~G~P~~~~-~~~GDL~V~~~V~~P~~Ls~~qk~~l~~l~~~~~ 359 (372)
T PRK14286 312 VFRLKGHGMPYLGA-YGKGDQHVIVKIEIPKKITRRQRELIEEFARESG 359 (372)
T ss_pred EEEECCCCCCCCCC-CCCCcEEEEEEEECCCCCCHHHHHHHHHHHHhcC
Confidence 99999999998654 3689999999999999999999999999998653
No 12
>PRK14281 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.9e-82 Score=664.75 Aligned_cols=356 Identities=42% Similarity=0.756 Sum_probs=308.1
Q ss_pred CcCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhcchhhhhhhcccccccCcccccC-CC
Q 010831 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG-GG 153 (499)
Q Consensus 76 ~~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~-~~~~~~f~~i~~AY~vLsd~~kR~~YD~~G~~~~~~~~~-g~ 153 (499)
..|||+||||+++|+.+|||+|||+||++||||+|++ +.++++|++|++||+||+||.+|++||+||+++++.+.. ++
T Consensus 2 ~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~~~~ 81 (397)
T PRK14281 2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASGG 81 (397)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhccccccCC
Confidence 5799999999999999999999999999999999974 568899999999999999999999999999988763211 01
Q ss_pred CCCC---ccCCCCc---cccccCCCCCC-------CCCCCCCCCCcccccccccCcceEEeeeecccccccceeeeeecc
Q 010831 154 SSAY---TTNPFDL---FETFFGPSMGG-------FPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELS 220 (499)
Q Consensus 154 ~~~~---~~~~~di---F~~fFg~~~gg-------~~~~~~~~~~~~~~~~~~~g~di~~~l~ltl~ea~~G~~k~i~v~ 220 (499)
.++| ..++.|+ |++|||++.+. |.++.+++..+.++....++.|+++.|.|+|+|+|+|++++|.++
T Consensus 82 ~~~~~~~~~~~~d~f~~f~~~Fgg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~ 161 (397)
T PRK14281 82 GPGYGGGGGDFNDIFSAFNDMFGGGARRGGGSPFGFEDVFGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKIK 161 (397)
T ss_pred CCCCCcCCCCHHHHHHHHHHHhCCCcccccccccccccccCCCcccccccCCCCCCCEEEEEEeEHHHHhCCeEEEEEEE
Confidence 1111 1122344 45788742110 000000000000111224789999999999999999999999999
Q ss_pred eeeecccccCcccccCcceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeeccCceEEEeeeeEEEE
Q 010831 221 HLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVK 300 (499)
Q Consensus 221 ~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~ 300 (499)
+.+.|+.|+|+|...+ .+.+|+.|+|+|.++..+++++|++++.++|+.|+|+|+++.++|..|+|.|++.+.++++|+
T Consensus 162 r~~~C~~C~G~G~~~~-~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~ 240 (397)
T PRK14281 162 KQVPCKECNGTGSKTG-ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGIKQGEVTVKVT 240 (397)
T ss_pred eeecCCCCCCcccCCC-CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCCCCccEecceEEEEe
Confidence 9999999999999887 678999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCEEEEcccCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEeeeCHHhhhCCCEEEEeccCCeEeEEeCC
Q 010831 301 VPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPP 380 (499)
Q Consensus 301 IP~Gv~~G~~Irl~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~~~l~ip~ 380 (499)
||+|+++|++|+|+|+|++++.++.+|||||+|++++|+.|+|+|+|||+++.|+|.|||+|++++|+||||++.|+||+
T Consensus 241 Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~ 320 (397)
T PRK14281 241 VPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDGAVKLTIPA 320 (397)
T ss_pred cCCCCCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEeecCCccEEEEeCC
Confidence 99999999999999999998877889999999999999999999999999999999999999999999999998999999
Q ss_pred CCCCCcEEEeccCCCCCCCCCCCCCcEEEEEEEEcCCCCCHHHHHHHHHHHhh
Q 010831 381 GTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASL 433 (499)
Q Consensus 381 gtq~g~~~~l~G~GmP~~~~~~~rGDL~V~~~V~~P~~Ls~~q~~lL~~l~~~ 433 (499)
|+++|++++|+|+|||..+. ..+|||||+|+|.||+.||++|+++|++|++.
T Consensus 321 g~~~G~~~ri~g~G~P~~~~-~~~GDL~V~~~V~~P~~Ls~~qk~~l~~l~~~ 372 (397)
T PRK14281 321 GTQPETMLRIPGKGIGHLRG-SGRGDQYVRVNVFVPKEVSHQDKELLKELKKS 372 (397)
T ss_pred ccCCCcEEEEcCCCCCCCCC-CCCCCEEEEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 99999999999999997654 36899999999999999999999999999874
No 13
>PRK14284 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.1e-82 Score=662.78 Aligned_cols=346 Identities=41% Similarity=0.763 Sum_probs=301.1
Q ss_pred cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhcchhhhhhhcccccccCcccccCC-CC
Q 010831 77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG-GS 154 (499)
Q Consensus 77 ~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~-~~~~~~f~~i~~AY~vLsd~~kR~~YD~~G~~~~~~~~~g-~~ 154 (499)
.|||+||||+++|+.+|||+|||+||++||||+|++ +.++++|++|++||+||+||+||++||+||++++..+.++ +.
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~g~~~~~~ 80 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAGGFGG 80 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccccccccCCcCC
Confidence 389999999999999999999999999999999984 6788999999999999999999999999999876432110 11
Q ss_pred CCCcc-----------------CCCCccccccCCCCCCCCCCCCCCCCcccccccccCcceEEeeeecccccccceeeee
Q 010831 155 SAYTT-----------------NPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEF 217 (499)
Q Consensus 155 ~~~~~-----------------~~~diF~~fFg~~~gg~~~~~~~~~~~~~~~~~~~g~di~~~l~ltl~ea~~G~~k~i 217 (499)
++|.. .+.|+|+.|||+..+++++ .....+..++.|+.+.|.|||+|+|+|+++++
T Consensus 81 ~g~~~~~~~~~~~~~~f~~~~~~~~d~f~~~fgg~g~~~~~-------~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i 153 (391)
T PRK14284 81 AGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGM-------RGGPAGARQGASKKVHITLSFEEAAKGVEKEL 153 (391)
T ss_pred CCcCcccchhhhccccccccccccccchhhhccCccccccc-------cccCCCcCCCCCeEEEEEEEHHHHhCCeeEEE
Confidence 11100 0125566666521001110 00011235789999999999999999999999
Q ss_pred ecceeeecccccCcccccCcceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeeccCceEEEeeeeE
Q 010831 218 ELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNI 297 (499)
Q Consensus 218 ~v~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l 297 (499)
.+++.+.|+.|+|+|.+.+..+.+|+.|+|+|.++..+ |+|++.++|+.|+|+|+++.++|..|+|.|++.+.++|
T Consensus 154 ~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~----G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l 229 (391)
T PRK14284 154 LVSGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSR----GFFSMASTCPECGGEGRVITDPCSVCRGQGRIKDKRSV 229 (391)
T ss_pred EEeeeccCCCCcccccCCCCCCeecCccCCeeEEEEEe----ceEEEEEECCCCCCCCcccCCcCCCCCCcceecceEEE
Confidence 99999999999999999999999999999999887543 77888899999999999999999999999999999999
Q ss_pred EEEeCCCCCCCCEEEEcccCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEeeeCHHhhhCCCEEEEeccC--CeEe
Q 010831 298 KVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVE--GISE 375 (499)
Q Consensus 298 ~V~IP~Gv~~G~~Irl~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~I~tld--G~~~ 375 (499)
+|.||||+++|++|+|+|+|+++++++++|||||+|+|++|+.|+|+|+|||+++.|+|.+|++|++++|+||| +.++
T Consensus 230 ~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld~g~~i~ 309 (391)
T PRK14284 230 HVHIPAGVDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGTCR 309 (391)
T ss_pred EEEECCCCCCCCEEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEeecCCCcEEE
Confidence 99999999999999999999999888999999999999999999999999999999999999999999999999 5679
Q ss_pred EEeCCCCCCCcEEEeccCCCCCCCCCCCCCcEEEEEEEEcCCCCCHHHHHHHHHHHhhc
Q 010831 376 LQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR 434 (499)
Q Consensus 376 l~ip~gtq~g~~~~l~G~GmP~~~~~~~rGDL~V~~~V~~P~~Ls~~q~~lL~~l~~~~ 434 (499)
|+||+|+++|++++|+|+|||..+. ..+|||||+|+|.+|+.|+++|+++|++|+++.
T Consensus 310 v~Ip~g~~~g~~~~i~g~G~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~ll~~l~~~~ 367 (391)
T PRK14284 310 LTIPEGIQSGTILKVRGQGFPNVHG-KGRGDLLVRISVETPQNLSEEQKELLRQFAATE 367 (391)
T ss_pred EEECCccCCCeEEEECCCCCCCCCC-CCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 9999999999999999999998654 368999999999999999999999999998753
No 14
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=100.00 E-value=5.4e-82 Score=663.94 Aligned_cols=334 Identities=33% Similarity=0.611 Sum_probs=298.8
Q ss_pred cCcCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhcccccccCcccccCCCC
Q 010831 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGS 154 (499)
Q Consensus 75 ~~~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~~~~~~~f~~i~~AY~vLsd~~kR~~YD~~G~~~~~~~~~g~~ 154 (499)
...|||+||||+++||.+|||+|||+||++||||+|++ .++|++|++||+||+||+||++||+||++++.++. +
T Consensus 26 ~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~---~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~~--~- 99 (421)
T PTZ00037 26 DNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD---PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGGE--Q- 99 (421)
T ss_pred cchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch---HHHHHHHHHHHHHhccHHHHHHHhhhcchhcccCC--C-
Confidence 36799999999999999999999999999999999853 58999999999999999999999999998775321 1
Q ss_pred CCCccCCCCccccccCCCCCCCCCCCCCCCCcccccccccCcceEEeeeecccccccceeeeeecceeeecccccCcccc
Q 010831 155 SAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAK 234 (499)
Q Consensus 155 ~~~~~~~~diF~~fFg~~~gg~~~~~~~~~~~~~~~~~~~g~di~~~l~ltl~ea~~G~~k~i~v~~~~~C~~C~GsG~~ 234 (499)
..++.|+|+.|||+ +. + +.+..+|.|+.+.|.|||+|+|+|++++|.+++.+.|+.|+|+|..
T Consensus 100 ---~~d~~d~f~~~Fgg---g~---------~--~~~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~ 162 (421)
T PTZ00037 100 ---PADASDLFDLIFGG---GR---------K--PGGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGP 162 (421)
T ss_pred ---CcchhhhHHHhhcc---cc---------c--cccccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCCCC
Confidence 13567889988873 10 0 0123468999999999999999999999999999999999999986
Q ss_pred cCcceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEc--eeeeeccCceEEEeeeeEEEEeCCCCCCCCEEE
Q 010831 235 MGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS--EYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILR 312 (499)
Q Consensus 235 ~g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~--~~C~~C~G~G~v~~~k~l~V~IP~Gv~~G~~Ir 312 (499)
.+ .+.+|+.|+|+|.+++..+.++..+++.++|+.|+|+|++|. ++|..|+|.|++.+.++|+|+||+|+.+|++|+
T Consensus 163 ~~-~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~dG~~I~ 241 (421)
T PTZ00037 163 KD-AFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKIT 241 (421)
T ss_pred CC-CCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccccccCCcCCCcceeeeeeEEEEeeCCCCCCCcEEE
Confidence 55 578999999999988777665523345689999999999986 899999999999999999999999999999999
Q ss_pred EcccCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEeeeCHHhhhCCCEEEEeccCCe-EeEEeCCC--CCCCcEEE
Q 010831 313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPG--TQPGDVLV 389 (499)
Q Consensus 313 l~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~-~~l~ip~g--tq~g~~~~ 389 (499)
|+|+|++.+ ++.||||||+|++++|+.|+|+|+|||+++.|+|.|||||+++.|+||||+ +.|+||+| ++||++++
T Consensus 242 ~~G~Gd~~~-~~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLdG~~l~I~ip~g~vt~pg~~~~ 320 (421)
T PTZ00037 242 FHGEADEKP-NEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVKPGDIKV 320 (421)
T ss_pred EecccCCCC-CCCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCCCCeEEEEeCCCcccCCCcEEE
Confidence 999999976 578999999999999999999999999999999999999999999999997 78999998 99999999
Q ss_pred eccCCCCCCCCCCCCCcEEEEEEEEcC--CCCCHHHHHHHHHHHhh
Q 010831 390 LAKKGAPKLNKPSIRGDHLFTVKVTIP--NRISAKERELLEELASL 433 (499)
Q Consensus 390 l~G~GmP~~~~~~~rGDL~V~~~V~~P--~~Ls~~q~~lL~~l~~~ 433 (499)
|+|+|||..++++.+|||||+|+|+|| +.||++|+++|++|+..
T Consensus 321 I~geGmP~~~~~~~rGDL~V~~~V~~P~~~~Ls~~qk~ll~~l~~~ 366 (421)
T PTZ00037 321 INNEGMPTYKSPFKKGNLYVTFEVIFPVDRKFTNEEKEILKSLFPQ 366 (421)
T ss_pred eCCCCcccCCCCCCCCCEEEEEEEEcCCCCCCCHHHHHHHHHhccC
Confidence 999999987655578999999999999 99999999999999864
No 15
>PRK14279 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=7.5e-82 Score=660.27 Aligned_cols=353 Identities=37% Similarity=0.692 Sum_probs=298.5
Q ss_pred cCcCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhcchhhhhhhcccccccCcccccC--
Q 010831 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG-- 151 (499)
Q Consensus 75 ~~~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~-~~~~~~~f~~i~~AY~vLsd~~kR~~YD~~G~~~~~~~~~-- 151 (499)
+.+|||+||||+++|+.+|||+|||+||++||||+|+ ++.++++|++|++||+|||||+||++||+||+++...+..
T Consensus 7 ~~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~~~~g~~~~ 86 (392)
T PRK14279 7 VEKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFGGR 86 (392)
T ss_pred cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhhccccccccc
Confidence 4689999999999999999999999999999999997 4578999999999999999999999999999753221110
Q ss_pred -----CCCCCCccC----CCCccccccCCC----CCCC----CCCCCCCCCcccccccccCcceEEeeeeccccccccee
Q 010831 152 -----GGSSAYTTN----PFDLFETFFGPS----MGGF----PGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAE 214 (499)
Q Consensus 152 -----g~~~~~~~~----~~diF~~fFg~~----~gg~----~~~~~~~~~~~~~~~~~~g~di~~~l~ltl~ea~~G~~ 214 (499)
++.++|..+ .+| |++||+.. +++| +++.+.+.+..+..+..++.|+++.|.|+|+|+|+|++
T Consensus 87 ~~~~~~~~~g~~~~~~~~~~d-~~~~f~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~~~~g~di~~~l~ltLee~~~G~~ 165 (392)
T PRK14279 87 RFDGGGGFGGFGTGGDGAEFN-LNDLFDAAGRGGGGGIGDLFGGLFNRGGGSARPSRPRRGNDLETETTLDFVEAAKGVT 165 (392)
T ss_pred cccCCCCCCCccccccccCcC-hhhhhcccccccccchhhhhhhhhcCCCcccccCCCCCCCCeEEEEEEEHHHHhCCeE
Confidence 011111100 011 22333211 0001 11000000001112345789999999999999999999
Q ss_pred eeeecceeeecccccCcccccCcceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeeccCceEEEee
Q 010831 215 KEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLK 294 (499)
Q Consensus 215 k~i~v~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~ 294 (499)
++|.+++.+.|+.|+|+|...+..+.+|+.|+|+|.++..+ |+|++.++|+.|+|+|++|.++|..|+|.|++.+.
T Consensus 166 ~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~ 241 (392)
T PRK14279 166 MPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQ----GAFGFSEPCTDCRGTGSIIEDPCEECKGTGVTTRT 241 (392)
T ss_pred EEEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEe----cceEEEEecCCCCceeEEeCCcCCCCCCCeEEEEe
Confidence 99999999999999999999998999999999999887653 67778899999999999999999999999999999
Q ss_pred eeEEEEeCCCCCCCCEEEEcccCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEeeeCHHhhhCCCEEEEeccCCeE
Q 010831 295 KNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGIS 374 (499)
Q Consensus 295 k~l~V~IP~Gv~~G~~Irl~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~~ 374 (499)
++++|.||+|+++|++|+|+|+|++.++++++|||||+|+|++|+.|+|+|+||++++.|+|.+|++|+++.|+|+||++
T Consensus 242 ~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~i 321 (392)
T PRK14279 242 RTINVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGPV 321 (392)
T ss_pred eeeEEEeCCCCCCCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCceE
Confidence 99999999999999999999999998888889999999999999999999999999999999999999999999999999
Q ss_pred eEEeCCCCCCCcEEEeccCCCCCCCCCCCCCcEEEEEEEEcCCCCCHHHHHHHHHHHhhc
Q 010831 375 ELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR 434 (499)
Q Consensus 375 ~l~ip~gtq~g~~~~l~G~GmP~~~~~~~rGDL~V~~~V~~P~~Ls~~q~~lL~~l~~~~ 434 (499)
+|+||+|+++|++++|+|+|||... +.+|||||+|+|+||++|+++|+++|++|+++.
T Consensus 322 ~v~Ip~g~~~g~~iri~g~G~p~~~--~~~GDL~I~~~v~~P~~Ls~~q~~~l~~~~~~~ 379 (392)
T PRK14279 322 GVKVPAGTADGRILRVRGRGVPKRS--GGAGDLLVTVKVAVPPNLDGAAAEALEAYAEAE 379 (392)
T ss_pred EEEECCCCCCCCEEEECCCCCCCCC--CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 9999999999999999999999632 468999999999999999999999999999863
No 16
>PRK14285 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.5e-81 Score=651.10 Aligned_cols=346 Identities=33% Similarity=0.665 Sum_probs=306.3
Q ss_pred CcCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhcchhhhhhhcccccccCcccccCC-C
Q 010831 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG-G 153 (499)
Q Consensus 76 ~~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~-~~~~~~f~~i~~AY~vLsd~~kR~~YD~~G~~~~~~~~~g-~ 153 (499)
..|||+||||+++||.+|||+|||+||++||||+|+. +.++++|++|++||+||+||.+|+.||+||+++++++.++ +
T Consensus 2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~~~~~~ 81 (365)
T PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGGGFEG 81 (365)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccCCCccc
Confidence 5799999999999999999999999999999999974 6788999999999999999999999999999887643211 1
Q ss_pred C-CCC---c---cCCCCccccccCCCCCCCCCCCCCCCCcccccccccCcceEEeeeecccccccceeeeeecceeeecc
Q 010831 154 S-SAY---T---TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCE 226 (499)
Q Consensus 154 ~-~~~---~---~~~~diF~~fFg~~~gg~~~~~~~~~~~~~~~~~~~g~di~~~l~ltl~ea~~G~~k~i~v~~~~~C~ 226 (499)
. +++ . .++.|+|++|||+.. +. .+..+..++.|+++.|.|||+|+|+|+++++.+++.+.|+
T Consensus 82 ~~~g~~~~~~~~~~~~d~f~~~fgg~~---~~--------~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~ 150 (365)
T PRK14285 82 FSGGFSGFSDIFEDFGDIFDSFFTGNR---GQ--------DKNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCE 150 (365)
T ss_pred cCCCccccccccccHHHHHHHhhcCCc---CC--------CCCcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCC
Confidence 1 111 1 123467777776311 00 0111235789999999999999999999999999999999
Q ss_pred cccCcccccCcceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeeccCceEEEeeeeEEEEeCCCCC
Q 010831 227 VCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVS 306 (499)
Q Consensus 227 ~C~GsG~~~g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~ 306 (499)
.|+|+|...+..+.+|+.|+|+|+++. .+|++++.++|+.|+|+|+++.++|..|+|.|++.+.++++|.||+|++
T Consensus 151 ~C~G~G~~~~~~~~~C~~C~G~G~~~~----~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~ 226 (365)
T PRK14285 151 SCLGKKSEKGTSPSICNMCNGSGRVMQ----GGGFFRVTTTCPKCYGNGKIISNPCKSCKGKGSLKKKETIELKIPAGID 226 (365)
T ss_pred CCCCcccCCCCCCccCCCccCceeEEe----cCceeEEeeecCCCCCcccccCCCCCCCCCCCEEeccEEEEEEECCCCC
Confidence 999999999998999999999998764 4588888899999999999999999999999999999999999999999
Q ss_pred CCCEEEEcccCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEeeeCHHhhhCCCEEEEeccCCe-EeEEeCCCCCCC
Q 010831 307 TGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPGTQPG 385 (499)
Q Consensus 307 ~G~~Irl~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~-~~l~ip~gtq~g 385 (499)
+|++|+|+|+|++.++++.+|||||+|++++|+.|+|+|+|||++++|+|.|||+|+++.|+||||+ ++|+||+|+++|
T Consensus 227 ~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~v~V~Ip~g~~~g 306 (365)
T PRK14285 227 DNQQIKMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIKIPKGTEND 306 (365)
T ss_pred CCCEEEEeeccccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCEEEEEeCCCcCCC
Confidence 9999999999999887788999999999999999999999999999999999999999999999996 799999999999
Q ss_pred cEEEeccCCCCCCCCCCCCCcEEEEEEEEcCCCCCHHHHHHHHHHHhhcCCC
Q 010831 386 DVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLRNTT 437 (499)
Q Consensus 386 ~~~~l~G~GmP~~~~~~~rGDL~V~~~V~~P~~Ls~~q~~lL~~l~~~~~~~ 437 (499)
++++|+|+|||..+.. .+|||||+|+|++|+.|+.+|+++|++|++...+-
T Consensus 307 ~~irl~GkG~p~~~~~-~~GDL~V~~~v~~P~~l~~~q~~~l~~l~~~~~~~ 357 (365)
T PRK14285 307 EQIIIKNEGMPILHTE-KFGNLILIIKIKTPKNLNSNAIKLLENLSKELKDI 357 (365)
T ss_pred cEEEECCCCccCCCCC-CCCCEEEEEEEECCCCCCHHHHHHHHHHHHHhccc
Confidence 9999999999976543 57999999999999999999999999999887653
No 17
>PRK14295 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.1e-81 Score=653.37 Aligned_cols=354 Identities=42% Similarity=0.745 Sum_probs=302.0
Q ss_pred cCcCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhcchhhhhhhccc----ccccCcccc
Q 010831 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQ----YGEAGVKST 149 (499)
Q Consensus 75 ~~~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~-~~~~~~f~~i~~AY~vLsd~~kR~~YD~----~G~~~~~~~ 149 (499)
|..|||+||||+++|+.+|||+|||+||++||||+|+. +.++++|++|++||+||+||.+|++||+ ||++++..+
T Consensus 7 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~~~ 86 (389)
T PRK14295 7 IEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFRPG 86 (389)
T ss_pred cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccccC
Confidence 56899999999999999999999999999999999974 5689999999999999999999999999 999887632
Q ss_pred cC-CCCCCCccCCCCccccccCCC-CCCCC----CCCCCCCCc-ccccccccCcceEEeeeecccccccceeeeeeccee
Q 010831 150 VG-GGSSAYTTNPFDLFETFFGPS-MGGFP----GMNQTGFRT-RRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHL 222 (499)
Q Consensus 150 ~~-g~~~~~~~~~~diF~~fFg~~-~gg~~----~~~~~~~~~-~~~~~~~~g~di~~~l~ltl~ea~~G~~k~i~v~~~ 222 (499)
.+ ++.++|.+++.++|..+++.+ +++++ .+....|+. ++..+..++.|+++.|.|||+|+|+|++++|.+++.
T Consensus 87 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~g~di~~~l~lsLee~~~G~~k~i~~~r~ 166 (389)
T PRK14295 87 PGGGGGGGFNFDLGDLFGGGAQGGGGAGGGGGLGDVFGGLFNRGGRRTQPRRGADVESEVTLSFTEAIDGATVPLRLTSQ 166 (389)
T ss_pred CCCCCCCCCCcccccccccccccccccccccchhhhhcccccCCCCCCCCCCCCCEEEEEEEEHHHHhCCceEEEEeecc
Confidence 11 111223333344443322110 00000 000000110 011224578999999999999999999999999999
Q ss_pred eecccccCcccccCcceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeeccCceEEEeeeeEEEEeC
Q 010831 223 ETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVP 302 (499)
Q Consensus 223 ~~C~~C~GsG~~~g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP 302 (499)
+.|++|+|+|.+.+..+.+|+.|+|+|.++..+ |+|++.++|+.|+|+|+++.++|..|.|.|++.+.++++|.||
T Consensus 167 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip 242 (389)
T PRK14295 167 APCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS----GGFSLSEPCPDCKGRGLIADDPCLVCKGSGRAKSSRTMQVRIP 242 (389)
T ss_pred ccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe----cceEEEEecCCCcceeEEeccCCCCCCCCceEeeeeEEEEEeC
Confidence 999999999999999899999999999987653 6777889999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcccCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEeeeCHHhhhCCCEEEEeccCC-eEeEEeCCC
Q 010831 303 PGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEG-ISELQVPPG 381 (499)
Q Consensus 303 ~Gv~~G~~Irl~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~I~tldG-~~~l~ip~g 381 (499)
+|+++|++|+|+|+|++.+.++.+|||||+|+|++|+.|+|+|+|||+++.|+|.+||+|++++|+|||| .++|+||+|
T Consensus 243 ~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tldG~~~~v~ip~g 322 (389)
T PRK14295 243 AGVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPPVTVKLPPG 322 (389)
T ss_pred CCCCCCCEEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEECCCCCEEEEEECCc
Confidence 9999999999999999987788899999999999999999999999999999999999999999999999 579999999
Q ss_pred CCCCcEEEeccCCCCCCCCCCCCCcEEEEEEEEcCCCCCHHHHHHHHHHHhhc
Q 010831 382 TQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR 434 (499)
Q Consensus 382 tq~g~~~~l~G~GmP~~~~~~~rGDL~V~~~V~~P~~Ls~~q~~lL~~l~~~~ 434 (499)
+++|++++|+|+|||..+ +.+|||||+|+|.||+.|+++|+++|++|++..
T Consensus 323 ~~~g~~iri~G~G~p~~~--~~~GDL~i~~~v~~P~~Ls~~qk~~l~~l~~~~ 373 (389)
T PRK14295 323 TPNGRVLRVRGKGAVRKD--GTRGDLLVTVEVAVPKDLSGKAREALEAFREAT 373 (389)
T ss_pred cCCCcEEEECCCCcCCCC--CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 999999999999999743 458999999999999999999999999999754
No 18
>PRK14301 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.9e-81 Score=650.01 Aligned_cols=345 Identities=44% Similarity=0.795 Sum_probs=302.1
Q ss_pred CcCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhcchhhhhhhcccccccCcccccCCCC
Q 010831 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGS 154 (499)
Q Consensus 76 ~~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~-~~~~~~f~~i~~AY~vLsd~~kR~~YD~~G~~~~~~~~~g~~ 154 (499)
..|||+||||+++|+.+|||+|||+||++||||+|++ ++++++|++|++||+||+||.+|+.||+||+++++++++ +
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~~~--~ 80 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNGG--F 80 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccccccCCC--C
Confidence 4799999999999999999999999999999999974 568899999999999999999999999999988764211 1
Q ss_pred CCCc--cCCCCccccccCCCCCCCCCCCCCCCCcccccccccCcceEEeeeecccccccceeeeeecceeeecccccCcc
Q 010831 155 SAYT--TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTG 232 (499)
Q Consensus 155 ~~~~--~~~~diF~~fFg~~~gg~~~~~~~~~~~~~~~~~~~g~di~~~l~ltl~ea~~G~~k~i~v~~~~~C~~C~GsG 232 (499)
++|. .++|+.|++||+..||+ ++.+ ..+..+..++.|+.+.|.|+|+|+|+|+++++.+++.+.|+.|+|+|
T Consensus 81 ~g~~~~~~~~~~f~d~f~~~fg~-g~~~-----~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G 154 (373)
T PRK14301 81 GGFSSAEDIFSHFSDIFGDLFGF-SGGG-----SRRGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSG 154 (373)
T ss_pred CCcccccccccchHHHHHHHhhc-cCcc-----cccCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcc
Confidence 2221 12233333344322221 0100 00112245789999999999999999999999999999999999999
Q ss_pred cccCcceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeeccCceEEEeeeeEEEEeCCCCCCCCEEE
Q 010831 233 AKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILR 312 (499)
Q Consensus 233 ~~~g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~~G~~Ir 312 (499)
...+..+.+|+.|+|+|.++..+ |++++.++|+.|+|+|+++.++|..|+|.|++.+.++++|+||+|+++|++|+
T Consensus 155 ~~~~~~~~~C~~C~G~G~v~~~~----G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~ 230 (373)
T PRK14301 155 AAPGTSPETCRHCGGSGQVRQSQ----GFFQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLR 230 (373)
T ss_pred cCCCCCCcccCCccCeeEEEEEe----eeEEEEEeCCCCCceeeecCCCCCCCCCCceeccceEEEEEeCCCCcCCCEEE
Confidence 99998899999999999886542 77888899999999999999999999999999999999999999999999999
Q ss_pred EcccCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEeeeCHHhhhCCCEEEEeccCCeEeEEeCCCCCCCcEEEecc
Q 010831 313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAK 392 (499)
Q Consensus 313 l~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~~~l~ip~gtq~g~~~~l~G 392 (499)
|+|+|++++.++++|||||+|+|++|+.|+|+|+|||++++|+|.+||+|+++.|+||||+++|+||+|+++|++++|+|
T Consensus 231 ~~g~G~~~~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~tldG~i~v~ip~g~~~g~~~ri~g 310 (373)
T PRK14301 231 LRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDPVTLDIPKGTQSGEVFRLRG 310 (373)
T ss_pred EeccccCCCCCCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEecCCccEEEEECCCcCCCcEEEEcC
Confidence 99999998877889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcEEEEEEEEcCCCCCHHHHHHHHHHHhh
Q 010831 393 KGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASL 433 (499)
Q Consensus 393 ~GmP~~~~~~~rGDL~V~~~V~~P~~Ls~~q~~lL~~l~~~ 433 (499)
+|||..+. ..+|||||+|+|.+|+.|+++|+++|++|+.+
T Consensus 311 ~G~p~~~~-~~~GDL~I~~~V~~P~~l~~~q~~~l~~l~~~ 350 (373)
T PRK14301 311 KGLPYLGS-SQKGDLLVEVSVVTPTKLTKRQEELLREFEAL 350 (373)
T ss_pred CCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 99998654 36899999999999999999999999999975
No 19
>PRK14282 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.1e-80 Score=647.80 Aligned_cols=349 Identities=44% Similarity=0.799 Sum_probs=308.9
Q ss_pred CcCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHhhcchhhhhhhcccccccCccccc-C-
Q 010831 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTV-G- 151 (499)
Q Consensus 76 ~~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~--~~~~~~f~~i~~AY~vLsd~~kR~~YD~~G~~~~~~~~-~- 151 (499)
..|||+||||+++|+.+|||+|||+||++||||+|+. +.++++|++|++||+||+||++|++||+||++++.... +
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~~~~~~ 82 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQET 82 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccccccccccC
Confidence 4799999999999999999999999999999999974 46889999999999999999999999999988764211 0
Q ss_pred CCCCCC-c-----c-CC--CCccccccCCCCCCCCCCCCCCCCcccccccccCcceEEeeeecccccccceeeeeeccee
Q 010831 152 GGSSAY-T-----T-NP--FDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHL 222 (499)
Q Consensus 152 g~~~~~-~-----~-~~--~diF~~fFg~~~gg~~~~~~~~~~~~~~~~~~~g~di~~~l~ltl~ea~~G~~k~i~v~~~ 222 (499)
++.++| . + ++ .|+|+.|||++ ++. ...+.+..+++|+++.|.|||+|+|+|+++++.+++.
T Consensus 83 ~~~g~~~~~~~~~~~~~~~~d~f~~~fgg~----~~~------~~~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~ 152 (369)
T PRK14282 83 ESGGGFFEDIFKDFENIFNRDIFDIFFGER----RTQ------EEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRY 152 (369)
T ss_pred CCCCcccccccccccccccchhhhHhhccc----CCc------ccccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeec
Confidence 111111 1 0 11 15666666521 110 0011223578999999999999999999999999999
Q ss_pred eecccccCcccccCcceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeeccCceEEEeeeeEEEEeC
Q 010831 223 ETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVP 302 (499)
Q Consensus 223 ~~C~~C~GsG~~~g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP 302 (499)
+.|+.|+|+|...+..+.+|+.|+|+|.++..+++++|++++.++|+.|+|+|+++.++|..|+|.|++.+.++|+|.||
T Consensus 153 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip 232 (369)
T PRK14282 153 ETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSGRIRRRVRTTVKIP 232 (369)
T ss_pred ccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCCCCceeEEEEEEEEEEeC
Confidence 99999999999999889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcccCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEeeeCHHhhhCCCEEEEeccCCe-EeEEeCCC
Q 010831 303 PGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPG 381 (499)
Q Consensus 303 ~Gv~~G~~Irl~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~-~~l~ip~g 381 (499)
+|+.+|++|+|+|+|++++.++++|||||+|+|++|+.|+|+|+||++++.|+|.||++|+++.|+|+||+ ++|+||+|
T Consensus 233 ~G~~~G~~i~~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~i~v~Ip~g 312 (369)
T PRK14282 233 AGVEDGTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTMLKIPPG 312 (369)
T ss_pred CCCCCCCEEEEecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeCCCCcEEEEEeCCC
Confidence 99999999999999999888889999999999999999999999999999999999999999999999997 79999999
Q ss_pred CCCCcEEEeccCCCCCCCCCCCCCcEEEEEEEEcCCCCCHHHHHHHHHHHhhcC
Q 010831 382 TQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLRN 435 (499)
Q Consensus 382 tq~g~~~~l~G~GmP~~~~~~~rGDL~V~~~V~~P~~Ls~~q~~lL~~l~~~~~ 435 (499)
+++|++++|+|+|||..+. ..+|||||+|+|.+|+.|+.+|+++|++|++++.
T Consensus 313 ~~~g~~iri~GkG~p~~~~-~~~GDL~V~~~v~~P~~l~~~~~~ll~~l~~~~~ 365 (369)
T PRK14282 313 TQPETVFRLKGKGLPNMRY-GRRGDLIVNVHVEIPKRLSREERKLLKELAKKRG 365 (369)
T ss_pred cCCCCEEEECCCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHhcC
Confidence 9999999999999997543 3589999999999999999999999999998644
No 20
>PRK14300 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.6e-80 Score=645.32 Aligned_cols=346 Identities=40% Similarity=0.764 Sum_probs=305.7
Q ss_pred CcCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhcccccccCccccc--C--
Q 010831 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTV--G-- 151 (499)
Q Consensus 76 ~~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~~~~~~~f~~i~~AY~vLsd~~kR~~YD~~G~~~~~~~~--~-- 151 (499)
..|||+||||+++||.+|||+|||+||++||||+++++.++++|++|++||+||+||.+|+.||+||++++..+. +
T Consensus 2 ~~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~~ 81 (372)
T PRK14300 2 SQDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQSRGGG 81 (372)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccccccccccCCC
Confidence 479999999999999999999999999999999998778899999999999999999999999999998775321 1
Q ss_pred CCCCCCccCCCCccccccCCCCCCCCCCCCCCCCcccccccccCcceEEeeeecccccccceeeeeecceeeecccccCc
Q 010831 152 GGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGT 231 (499)
Q Consensus 152 g~~~~~~~~~~diF~~fFg~~~gg~~~~~~~~~~~~~~~~~~~g~di~~~l~ltl~ea~~G~~k~i~v~~~~~C~~C~Gs 231 (499)
++.++|..++.++|++||+..+|+.+. ..+.....++.|+.+.|.|+|+|+|+|++++|.+.+.+.|+.|+|+
T Consensus 82 g~~~~~~~~~~~~f~~~f~~~~gg~~~-------~~~~~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~ 154 (372)
T PRK14300 82 GNHGGFHPDINDIFGDFFSDFMGGSRR-------SRPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGS 154 (372)
T ss_pred CCCCccccchhhhHHHHHHhhcCCCCC-------CCCCcCCCCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCc
Confidence 111222223446788888753332100 0111112478999999999999999999999999999999999999
Q ss_pred ccccCcceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeeccCceEEEeeeeEEEEeCCCCCCCCEE
Q 010831 232 GAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSIL 311 (499)
Q Consensus 232 G~~~g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~~G~~I 311 (499)
|...+..+.+|+.|+|+|.++.. +|++++..+|+.|+|+|+++.++|..|+|.|++.+.++++|.||+|+++|++|
T Consensus 155 g~~~~~~~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i 230 (372)
T PRK14300 155 GSEKGETVTTCDACSGVGATRMQ----QGFFTIEQACHKCQGNGQIIKNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRI 230 (372)
T ss_pred ccCCCCCCccCCCccCeEEEEEe----eceEEEEEeCCCCCccceEeCCCCCCCCCceEEEeeEEEEEEECCCCCCCcEE
Confidence 99999889999999999987653 37888889999999999999999999999999999999999999999999999
Q ss_pred EEcccCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEeeeCHHhhhCCCEEEEeccCC-eEeEEeCCCCCCCcEEEe
Q 010831 312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEG-ISELQVPPGTQPGDVLVL 390 (499)
Q Consensus 312 rl~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~I~tldG-~~~l~ip~gtq~g~~~~l 390 (499)
+|+|+|+++..++.+|||||+|+|++|+.|+|+|+||++++.|+|.+|++|+++.|+|+|| .++|+||+|+++|++++|
T Consensus 231 ~l~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~i~v~Ip~g~~~g~~iri 310 (372)
T PRK14300 231 RHTGEGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIPAGTQNGDQLRL 310 (372)
T ss_pred EEeccccCCCCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCCCEEEEEECCccCCCcEEEE
Confidence 9999999987788899999999999999999999999999999999999999999999998 579999999999999999
Q ss_pred ccCCCCCCCCCCCCCcEEEEEEEEcCCCCCHHHHHHHHHHHhh
Q 010831 391 AKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASL 433 (499)
Q Consensus 391 ~G~GmP~~~~~~~rGDL~V~~~V~~P~~Ls~~q~~lL~~l~~~ 433 (499)
+|+|||..+. ..+|||||+|+|.+|+.||++|+++|++|+++
T Consensus 311 ~g~G~p~~~~-~~~GDL~V~~~v~~P~~ls~~qk~~l~~l~~~ 352 (372)
T PRK14300 311 RSKGMSKMRS-TIRGDMLTHIHVEVPKNLSKRQRELLEEFKKE 352 (372)
T ss_pred CCCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 9999997653 36899999999999999999999999999863
No 21
>PRK14294 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.4e-80 Score=644.54 Aligned_cols=345 Identities=49% Similarity=0.882 Sum_probs=305.0
Q ss_pred CcCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhcchhhhhhhcccccccCcccccCCCC
Q 010831 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGS 154 (499)
Q Consensus 76 ~~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~-~~~~~~~f~~i~~AY~vLsd~~kR~~YD~~G~~~~~~~~~g~~ 154 (499)
..|||+||||+++|+.+|||+|||+||++||||+|+ ++.++++|++|++||+||+||.+|+.||+||+++++++..++.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~~~~~~ 82 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTGFSGF 82 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCCCCCCc
Confidence 479999999999999999999999999999999998 4678899999999999999999999999999988763211111
Q ss_pred CCCc---cCCCCccccccCCCCCCCCCCCCCCCCcccccccccCcceEEeeeecccccccceeeeeecceeeecccccCc
Q 010831 155 SAYT---TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGT 231 (499)
Q Consensus 155 ~~~~---~~~~diF~~fFg~~~gg~~~~~~~~~~~~~~~~~~~g~di~~~l~ltl~ea~~G~~k~i~v~~~~~C~~C~Gs 231 (499)
++|. .++.|+|++|||. |++++ .....+..+++|+++.|.|+|+|+|+|+++++.+.+.+.|+.|+|+
T Consensus 83 ~~~~~~~~~~~d~f~~~fg~--g~~~~-------~~~~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~ 153 (366)
T PRK14294 83 SGFDDIFSSFGDIFEDFFGF--GGGRR-------GRSRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGS 153 (366)
T ss_pred CccccchhhhhhhHHHhhcc--CCCcC-------CcccCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCc
Confidence 2221 1234677777761 11100 0011123578999999999999999999999999999999999999
Q ss_pred ccccCcceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeeccCceEEEeeeeEEEEeCCCCCCCCEE
Q 010831 232 GAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSIL 311 (499)
Q Consensus 232 G~~~g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~~G~~I 311 (499)
|...+..+.+|+.|+|+|.++.. .|+|++.++|+.|+|+|+++.++|..|+|.|++.+.++++|.||+|+++|++|
T Consensus 154 G~~~~~~~~~C~~C~G~G~~~~~----~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i 229 (366)
T PRK14294 154 GCEPGTSPTTCPQCGGSGQVTQS----QGFFSIRTTCPRCRGMGKVIVSPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRL 229 (366)
T ss_pred cccCCCCcccCCCcCCeEEEEEE----eeeEEEEeeCCCCCCcCeecCcCCCCCCCceEeecceeEEEecCCCCcCCcEE
Confidence 99998889999999999988653 27788889999999999999999999999999999999999999999999999
Q ss_pred EEcccCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEeeeCHHhhhCCCEEEEeccCCeEeEEeCCCCCCCcEEEec
Q 010831 312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLA 391 (499)
Q Consensus 312 rl~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~~~l~ip~gtq~g~~~~l~ 391 (499)
+|+|+|++++.++.+|||||+|+|++|+.|+|+|+|||+++.|+|.+||+|+++.|+||||++.|+||+|+++|++++|+
T Consensus 230 ~~~g~G~~~~~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~iri~ 309 (366)
T PRK14294 230 RLRGEGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGERELKIPKGTQPGDIFRFK 309 (366)
T ss_pred EEccCccCCCCCCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEECCCCcEEEEECCCcCCCCEEEEC
Confidence 99999999877888999999999999999999999999999999999999999999999999899999999999999999
Q ss_pred cCCCCCCCCCCCCCcEEEEEEEEcCCCCCHHHHHHHHHHHhhc
Q 010831 392 KKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR 434 (499)
Q Consensus 392 G~GmP~~~~~~~rGDL~V~~~V~~P~~Ls~~q~~lL~~l~~~~ 434 (499)
|+|||..+. ..+|||||+|+|.+|+.|+.+|+++|++|+++.
T Consensus 310 G~G~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~~~~ 351 (366)
T PRK14294 310 GKGIPSLRG-GGRGDQIIEVEVKVPTRLTKKQEELLTEFARLE 351 (366)
T ss_pred CCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 999997654 368999999999999999999999999999864
No 22
>PRK10767 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.9e-79 Score=639.37 Aligned_cols=344 Identities=44% Similarity=0.811 Sum_probs=302.1
Q ss_pred CcCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhcchhhhhhhcccccccCcccccC-CC
Q 010831 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG-GG 153 (499)
Q Consensus 76 ~~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~-~~~~~~~f~~i~~AY~vLsd~~kR~~YD~~G~~~~~~~~~-g~ 153 (499)
..|||+||||+++|+.+|||+|||+||++||||+|+ ++.++++|++|++||++|+||.+|+.||+||++++..+.+ ++
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~~~ 82 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGGGGG 82 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCCCCCC
Confidence 479999999999999999999999999999999997 4568899999999999999999999999999988763321 11
Q ss_pred CCCCccCCCCccccccCCCCCCCCCCCCCCCCcccccccccCcceEEeeeecccccccceeeeeecceeeecccccCccc
Q 010831 154 SSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGA 233 (499)
Q Consensus 154 ~~~~~~~~~diF~~fFg~~~gg~~~~~~~~~~~~~~~~~~~g~di~~~l~ltl~ea~~G~~k~i~v~~~~~C~~C~GsG~ 233 (499)
.+++ .++.|+|++||+..||+.++ . .+.+..++.|+.+.|.|||+|+|+|++++|.+++.+.|+.|+|+|.
T Consensus 83 ~~~~-~~~~~~f~~~f~~~fgg~~~-------~-~~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~ 153 (371)
T PRK10767 83 FGGG-GGFGDIFGDIFGDIFGGGRG-------G-GRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGA 153 (371)
T ss_pred CCCc-cccccchhhhhhhhccCCcc-------c-cCCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCccc
Confidence 1111 11224455555443322100 0 1112457899999999999999999999999999999999999999
Q ss_pred ccCcceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeeccCceEEEeeeeEEEEeCCCCCCCCEEEE
Q 010831 234 KMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRV 313 (499)
Q Consensus 234 ~~g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~~G~~Irl 313 (499)
..+....+|+.|+|+|.++..+ |++++.++|+.|+|+|+++.++|..|+|.|++.+.++++|.||+|+++|++|+|
T Consensus 154 ~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~ 229 (371)
T PRK10767 154 KPGTSPKTCPTCHGAGQVRMQQ----GFFTVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRIRL 229 (371)
T ss_pred CCCCCCccCCCCCCeeEEEEee----ceEEEEEeCCCCCCceeECCCCCCCCCCCceEeeeeeEEEecCCCCCCCcEEEE
Confidence 9998889999999999876543 777778999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEeeeCHHhhhCCCEEEEeccCCeEeEEeCCCCCCCcEEEeccC
Q 010831 314 VGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKK 393 (499)
Q Consensus 314 ~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~~~l~ip~gtq~g~~~~l~G~ 393 (499)
+|+|+++..++.+|||||+|++++|+.|+|+|+||++++.|+|.+||+|+++.|+||||.++|+||+|+++|++++|+|+
T Consensus 230 ~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~i~v~ip~g~~~g~~~~i~g~ 309 (371)
T PRK10767 230 SGEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGRVKLKIPEGTQTGKLFRLRGK 309 (371)
T ss_pred ecCccCCCCCCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEecCCCcEEEEeCCCCCCCCEEEECCC
Confidence 99999987778899999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred CCCCCCCCCCCCcEEEEEEEEcCCCCCHHHHHHHHHHHhh
Q 010831 394 GAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASL 433 (499)
Q Consensus 394 GmP~~~~~~~rGDL~V~~~V~~P~~Ls~~q~~lL~~l~~~ 433 (499)
|||..+. ..+|||||+|+|.+|+.|+.+|+++|++|++.
T Consensus 310 G~p~~~~-~~~GDL~v~~~v~~P~~l~~~~~~ll~~l~~~ 348 (371)
T PRK10767 310 GVKSVRS-GARGDLYCQVVVETPVNLTKRQKELLEEFEES 348 (371)
T ss_pred CcCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 9997654 36899999999999999999999999999974
No 23
>PRK14289 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=7.1e-79 Score=637.89 Aligned_cols=355 Identities=43% Similarity=0.725 Sum_probs=309.9
Q ss_pred CcCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhcchhhhhhhcccccccCcccccC-CC
Q 010831 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG-GG 153 (499)
Q Consensus 76 ~~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~-~~~~~~f~~i~~AY~vLsd~~kR~~YD~~G~~~~~~~~~-g~ 153 (499)
..|||++|||+++|+.+|||+|||+||++||||+|+. ++++++|++|++||++|+||.+|++||+||+++++.+.+ ++
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~~~~~~~~ 83 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAAGGGG 83 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccCCCCCC
Confidence 5799999999999999999999999999999999974 578999999999999999999999999999987753211 11
Q ss_pred CCCCccCCCCccc---cccCCCCCCCCCCCCCCCCcc-cccccccCcceEEeeeecccccccceeeeeecceeeeccccc
Q 010831 154 SSAYTTNPFDLFE---TFFGPSMGGFPGMNQTGFRTR-RRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCT 229 (499)
Q Consensus 154 ~~~~~~~~~diF~---~fFg~~~gg~~~~~~~~~~~~-~~~~~~~g~di~~~l~ltl~ea~~G~~k~i~v~~~~~C~~C~ 229 (499)
+++...++.++|. ++|++.++++++++ .+... ...+..++.|+++.|.|+|+|+|+|++++|.+++.+.|+.|+
T Consensus 84 ~~~~~~~~~~~f~~f~~~fg~~~gg~~~~~--~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~ 161 (386)
T PRK14289 84 FSGEGMSMEDIFSMFGDIFGGHGGGFGGFG--GFGGGGSQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCH 161 (386)
T ss_pred CCCCCcChhhhhHHhhhhhcccccCccccc--ccccccccCCCCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCCCC
Confidence 1110112334443 33654332221110 01111 111235789999999999999999999999999999999999
Q ss_pred CcccccCcceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeeccCceEEEeeeeEEEEeCCCCCCCC
Q 010831 230 GTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGS 309 (499)
Q Consensus 230 GsG~~~g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~~G~ 309 (499)
|+|........+|+.|+|+|.++..+++++|++++..+|+.|+|+|+++.++|..|+|.|++.+.++++|+||+|+++|+
T Consensus 162 G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~ 241 (386)
T PRK14289 162 GTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIVYGEEVITVKIPAGVAEGM 241 (386)
T ss_pred CCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCCCCcEEeeeEEEEEEeCCCCCCCC
Confidence 99999888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcccCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEeeeCHHhhhCCCEEEEeccCCeEeEEeCCCCCCCcEEE
Q 010831 310 ILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLV 389 (499)
Q Consensus 310 ~Irl~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~~~l~ip~gtq~g~~~~ 389 (499)
+|+|+|+|++.+.++.+|||||+|+|++|+.|+|+|+||++++.|+|.+|++|+++.|+|+||+++|+||+|+++|++++
T Consensus 242 ~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g~~~r 321 (386)
T PRK14289 242 QLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTIDGKAKVKIEAGTQPGKVLR 321 (386)
T ss_pred EEEEeccccCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEeecCCceEEEEECCccCCCcEEE
Confidence 99999999998777889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCCCCCCCCcEEEEEEEEcCCCCCHHHHHHHHHHHhh
Q 010831 390 LAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASL 433 (499)
Q Consensus 390 l~G~GmP~~~~~~~rGDL~V~~~V~~P~~Ls~~q~~lL~~l~~~ 433 (499)
|+|+|||..++ ..+|||||+|+|.||+.|+++|+++|++|++.
T Consensus 322 i~g~G~p~~~~-~~~GDL~v~~~v~~P~~l~~~q~~~l~~l~~~ 364 (386)
T PRK14289 322 LRNKGLPSVNG-YGTGDLLVNVSVYIPETLSKEEKQTLEKMENS 364 (386)
T ss_pred ECCCCcCCCCC-CCCCcEEEEEEEEeCCCCCHHHHHHHHHHHhh
Confidence 99999997654 36899999999999999999999999999985
No 24
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=100.00 E-value=4.5e-79 Score=633.21 Aligned_cols=346 Identities=53% Similarity=0.926 Sum_probs=310.5
Q ss_pred CcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhcccccccCcccccCC---CC
Q 010831 78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG---GS 154 (499)
Q Consensus 78 d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~~~~~~~f~~i~~AY~vLsd~~kR~~YD~~G~~~~~~~~~g---~~ 154 (499)
|||+||||+++|+.+|||+|||+||++||||+|+++.++++|++|++||+||+||.+|+.||+||+++++.+.++ +.
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~~~~ 80 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGGGGGGF 80 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCcCCCCCc
Confidence 799999999999999999999999999999999877889999999999999999999999999999887642211 11
Q ss_pred CCCc----cCCCCccccccCCCCCCCCCCCCCCCCcccccccccCcceEEeeeecccccccceeeeeecceeeecccccC
Q 010831 155 SAYT----TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTG 230 (499)
Q Consensus 155 ~~~~----~~~~diF~~fFg~~~gg~~~~~~~~~~~~~~~~~~~g~di~~~l~ltl~ea~~G~~k~i~v~~~~~C~~C~G 230 (499)
.++. .++.|+|+.|||+++|+ + ..+..+..+++|+.+.|.|||+|+|+|+++++.+++.+.|+.|+|
T Consensus 81 ~~~~~~~~~~~~~~f~~~fg~~~g~--~-------~~~~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G 151 (354)
T TIGR02349 81 NGFDIGFFGDFGDIFGDFFGGGGGS--G-------RRRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHG 151 (354)
T ss_pred CCccccCcCchhhhHHHHhccCccc--C-------ccccCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCC
Confidence 1111 13447788888742110 0 011123457899999999999999999999999999999999999
Q ss_pred cccccCcceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeeccCceEEEeeeeEEEEeCCCCCCCCE
Q 010831 231 TGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSI 310 (499)
Q Consensus 231 sG~~~g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~~G~~ 310 (499)
+|...+....+|+.|+|+|.++..+++++|++++.++|+.|+|+|+++.++|..|+|.|++.+.++++|.||+|+++|++
T Consensus 152 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~ 231 (354)
T TIGR02349 152 TGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRVKERKTITVKIPAGVDTGQR 231 (354)
T ss_pred CCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCCCCcEecccceEEEEECCCCCCCCE
Confidence 99998888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEeeeCHHhhhCCCEEEEeccCCeEeEEeCCCCCCCcEEEe
Q 010831 311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVL 390 (499)
Q Consensus 311 Irl~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~~~l~ip~gtq~g~~~~l 390 (499)
|+|+|+|++.+.++.+|||||+|++++|+.|+|+|+||++++.|+|.|||+|+++.|+||||.++|+||+++++|++++|
T Consensus 232 i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~ldG~i~v~ip~g~~~g~~~~i 311 (354)
T TIGR02349 232 LRVSGKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDGDVKLKIPAGTQSGTVFRL 311 (354)
T ss_pred EEEecCccCCCCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEecCCceEEEEECCcccCCcEEEE
Confidence 99999999977778899999999999999999999999999999999999999999999999889999999999999999
Q ss_pred ccCCCCCCCCCCCCCcEEEEEEEEcCCCCCHHHHHHHHHHHhh
Q 010831 391 AKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASL 433 (499)
Q Consensus 391 ~G~GmP~~~~~~~rGDL~V~~~V~~P~~Ls~~q~~lL~~l~~~ 433 (499)
+|+|||..+.. .+|||||+|+|.+|+.|+.+|+++|++|++.
T Consensus 312 ~g~G~p~~~~~-~~GDL~i~~~v~~P~~l~~~~~~~l~~~~~~ 353 (354)
T TIGR02349 312 KGKGVPRLRGN-GRGDLLVTVKVETPKNLSKEQKELLEELAEA 353 (354)
T ss_pred CCCCcCCCCCC-CCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 99999976543 6899999999999999999999999999864
No 25
>PRK14291 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.1e-79 Score=637.63 Aligned_cols=356 Identities=41% Similarity=0.765 Sum_probs=305.7
Q ss_pred cCcCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhcccccccCcccccC--C
Q 010831 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG--G 152 (499)
Q Consensus 75 ~~~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~~~~~~~f~~i~~AY~vLsd~~kR~~YD~~G~~~~~~~~~--g 152 (499)
|..|||+||||+++|+.+|||+|||+||++||||+|+++.++++|++|++||+||+||.+|++||+||++++..+.+ +
T Consensus 1 ~~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~ 80 (382)
T PRK14291 1 AKKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQQ 80 (382)
T ss_pred CCCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccccCccc
Confidence 35799999999999999999999999999999999988889999999999999999999999999999987753211 1
Q ss_pred CCCCCc----cCCCCccccccCCC-CCC-CCCCCCCCCCcccccccccCcceEEeeeecccccccceeeeeecceeeecc
Q 010831 153 GSSAYT----TNPFDLFETFFGPS-MGG-FPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCE 226 (499)
Q Consensus 153 ~~~~~~----~~~~diF~~fFg~~-~gg-~~~~~~~~~~~~~~~~~~~g~di~~~l~ltl~ea~~G~~k~i~v~~~~~C~ 226 (499)
+.++|. .++.|+|.+||+.. +++ |++++....++....+..++.|+.+.|.|||+|+|+|+++++.+++.+.|+
T Consensus 81 ~~~~~~~~~~~~~~d~f~~~f~~fg~~~~fg~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~ 160 (382)
T PRK14291 81 GQEGFSDFGGGNIEDILEDVFDIFGFGDIFGRRRATRERRKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCE 160 (382)
T ss_pred cccccccccCCCHHHHHHHHHHhccccccccccccccccccccccccCCCCEEEEEEEEHHHhhCCEEEEEEEeeeccCC
Confidence 111221 23446777775321 011 111100000000112235789999999999999999999999999999999
Q ss_pred cccCcccccCcceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeeccCceEEEeeeeEEEEeCCCCC
Q 010831 227 VCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVS 306 (499)
Q Consensus 227 ~C~GsG~~~g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~ 306 (499)
.|+|+|...+....+|+.|+|+|.++.. .|++++.++|+.|+|+|. +.++|..|+|.|++.+.++|+|+||||+.
T Consensus 161 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~-~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~ 235 (382)
T PRK14291 161 ACGGTGYDPGSGEKVCPTCGGSGEIYQR----GGFFRISQTCPTCGGEGV-LREPCSKCNGRGLVIKKETIKVRIPPGVD 235 (382)
T ss_pred CCccccCCCCCCCccCCCCCCceEEEEe----cceEEEEecCCCCCCceE-EccCCCCCCCCceEEeeeEEEEEeCCCCC
Confidence 9999999999999999999999988664 367777899999999994 78999999999999999999999999999
Q ss_pred CCCEEEEcccCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEeeeCHHhhhCCCEEEEeccCCe-EeEEeCCCCCCC
Q 010831 307 TGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPGTQPG 385 (499)
Q Consensus 307 ~G~~Irl~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~-~~l~ip~gtq~g 385 (499)
+|++|+|+|+|++++.++.+|||||+|++++|+.|+|+|+||++++.|+|.||++|+++.|+|+||+ ++|+||+|+++|
T Consensus 236 ~G~~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~l~V~Ip~g~~~G 315 (382)
T PRK14291 236 NGSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKKEKVKIPPGTKEG 315 (382)
T ss_pred CCCEEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEecCCCCEEEEEECCccCCC
Confidence 9999999999999888899999999999999999999999999999999999999999999999996 799999999999
Q ss_pred cEEEeccCCCCCCCCCCCCCcEEEEEEEEcCC--CCC------HHHHHHHHHHHhhcCC
Q 010831 386 DVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPN--RIS------AKERELLEELASLRNT 436 (499)
Q Consensus 386 ~~~~l~G~GmP~~~~~~~rGDL~V~~~V~~P~--~Ls------~~q~~lL~~l~~~~~~ 436 (499)
++++|+|+|||..+. ..+|||||+|+|+||+ .|| ++|++||++|++++..
T Consensus 316 ~~i~i~G~G~p~~~~-~~~GDL~V~~~V~~P~~~~ls~~~~~~~~~~~~~~~l~~~~~~ 373 (382)
T PRK14291 316 DKIRVPGKGMPRLKG-SGYGDLVVRVHIDVPKISMLSKLMGDGKKAKKLLKELDKLLPE 373 (382)
T ss_pred CEEEECCCCCCCCCC-CCCCCEEEEEEEEeCCCcCcCccccCCHHHHHHHHHHHhhcCC
Confidence 999999999998654 3689999999999998 599 9999999999987653
No 26
>PRK14283 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.4e-78 Score=633.85 Aligned_cols=351 Identities=44% Similarity=0.798 Sum_probs=305.4
Q ss_pred CcCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhcccccccCcccccCCCCC
Q 010831 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGSS 155 (499)
Q Consensus 76 ~~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~~~~~~~f~~i~~AY~vLsd~~kR~~YD~~G~~~~~~~~~g~~~ 155 (499)
..|||+||||+++|+.+|||+|||+||++||||+|+++.++++|++|++||+||+||.+|++||+||++++.+. +. .+
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~~~-~~-~~ 81 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDGF-SQ-ED 81 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhcccccccc-cc-cc
Confidence 57999999999999999999999999999999999888899999999999999999999999999999876521 10 01
Q ss_pred CCc-cCCCCccccccCCCCCC-CCCCCCCCCCcccccccccCcceEEeeeecccccccceeeeeecceeeecccccCccc
Q 010831 156 AYT-TNPFDLFETFFGPSMGG-FPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGA 233 (499)
Q Consensus 156 ~~~-~~~~diF~~fFg~~~gg-~~~~~~~~~~~~~~~~~~~g~di~~~l~ltl~ea~~G~~k~i~v~~~~~C~~C~GsG~ 233 (499)
.|. .++.++|..|+++ ++. |..+ +|++....+..++.|+.++|.|+|+|+|+|+++++.+++.+.|+.|+|+|.
T Consensus 82 ~~~~~~~~~~~~~~~~~-~~~~f~~~---~fgg~~~~~~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G~ 157 (378)
T PRK14283 82 IFNNINFEDIFQGFGFG-IGNIFDMF---GFGGGSRHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRA 157 (378)
T ss_pred cccccCccccccccccc-hhhhcccc---ccCCCCCCCccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCcccc
Confidence 010 1122333332210 000 0000 000000112347899999999999999999999999999999999999999
Q ss_pred ccCcceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeeccCceEEEeeeeEEEEeCCCCCCCCEEEE
Q 010831 234 KMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRV 313 (499)
Q Consensus 234 ~~g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~~G~~Irl 313 (499)
..+....+|+.|+|+|.++..+++.+|++++..+|+.|+|+|+.+.++|..|+|.|.+.+.++++|.||+|+++|++|+|
T Consensus 158 ~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~l 237 (378)
T PRK14283 158 EPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVVRETKTISVKIPAGVETGSRLRV 237 (378)
T ss_pred CCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCCCceeeccceeEEEEECCCCCCCcEEEE
Confidence 99888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEeeeCHHhhhCCCEEEEeccCCeEeEEeCCCCCCCcEEEeccC
Q 010831 314 VGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKK 393 (499)
Q Consensus 314 ~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~~~l~ip~gtq~g~~~~l~G~ 393 (499)
+|+|++.+.++.+|||||+|+|++|+.|+|+|+||++++.|+|.+|++|+++.|+|+||.+.|+||+|+++|++++|+|+
T Consensus 238 ~g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g~~~ri~g~ 317 (378)
T PRK14283 238 SGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTIDGPVELKIPAGTQSGTTFRLKGH 317 (378)
T ss_pred eccccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEEcCCceEEEEeCCCCCCCCEEEECCC
Confidence 99999987778899999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred CCCCCCCCCCCCcEEEEEEEEcCCCCCHHHHHHHHHHHhh
Q 010831 394 GAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASL 433 (499)
Q Consensus 394 GmP~~~~~~~rGDL~V~~~V~~P~~Ls~~q~~lL~~l~~~ 433 (499)
|||.... ..+|||||+|+|+||+.|+++|+++|++|++.
T Consensus 318 G~p~~~~-~~~GdL~v~~~v~~P~~l~~~q~~ll~~~~~~ 356 (378)
T PRK14283 318 GMPSLRW-SGKGNLYVKVKVVVPKKLSPKQKELLREFASI 356 (378)
T ss_pred CCCCCCC-CCCCCEEEEEEEEeCCCCCHHHHHHHHHHHhh
Confidence 9997653 36899999999999999999999999999865
No 27
>PRK14293 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3e-78 Score=630.47 Aligned_cols=354 Identities=57% Similarity=1.001 Sum_probs=313.4
Q ss_pred CcCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhcccccccCcccccC-CCC
Q 010831 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG-GGS 154 (499)
Q Consensus 76 ~~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~~~~~~~f~~i~~AY~vLsd~~kR~~YD~~G~~~~~~~~~-g~~ 154 (499)
..|||+||||+++|+.+|||+|||+||++||||+|+++.++++|++|++||+||+||.+|++||+||+++++++.+ ++.
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~~~~~~~ 81 (374)
T PRK14293 2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGAAGFPDM 81 (374)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhccccccccCCCcCCc
Confidence 5799999999999999999999999999999999988889999999999999999999999999999987753211 011
Q ss_pred CCCccCCCCccccccCCCCCCCCCCCCCCCCcccccccccCcceEEeeeecccccccceeeeeecceeeecccccCcccc
Q 010831 155 SAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAK 234 (499)
Q Consensus 155 ~~~~~~~~diF~~fFg~~~gg~~~~~~~~~~~~~~~~~~~g~di~~~l~ltl~ea~~G~~k~i~v~~~~~C~~C~GsG~~ 234 (499)
+++ .++.|+|++|||+. +++ ++.++. .+..+..++.|+.+.|.|+|+|+|.|+++++.+++.+.|+.|+|+|..
T Consensus 82 ~~~-~~~~d~f~~~fg~~-~~~---~~~~~~-~~~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~ 155 (374)
T PRK14293 82 GDM-GGFADIFETFFSGF-GGA---GGQGGR-RRRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAK 155 (374)
T ss_pred ccc-cchHHHHHHHhccc-CCC---CCCCcc-ccccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcCCC
Confidence 111 12347888888631 111 100000 011123578999999999999999999999999999999999999999
Q ss_pred cCcceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeeccCceEEEeeeeEEEEeCCCCCCCCEEEEc
Q 010831 235 MGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVV 314 (499)
Q Consensus 235 ~g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~~G~~Irl~ 314 (499)
.+....+|+.|+|+|.++..+++++|+|++..+|+.|.|+|+++.++|.+|.|.|++.+.++++|.||+|+++|++|+|+
T Consensus 156 ~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~IppG~~~G~~i~l~ 235 (374)
T PRK14293 156 PGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRVS 235 (374)
T ss_pred CCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCCCCcccccceEEEEEeCCCCCCCCEEEEc
Confidence 98889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEeeeCHHhhhCCCEEEEeccCCeEeEEeCCCCCCCcEEEeccCC
Q 010831 315 GEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKG 394 (499)
Q Consensus 315 G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~~~l~ip~gtq~g~~~~l~G~G 394 (499)
|+|++...++.+|||||+|+|++|+.|+|+|+||+++++|+|.+|++|+++.|+|+||+++|+||+++++|++++|+|+|
T Consensus 236 g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldG~~~i~ip~~~~~g~~~ri~g~G 315 (374)
T PRK14293 236 GEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDGPVELTIPAGTQPNTVLTLENKG 315 (374)
T ss_pred cCccCCCCCCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEecCCCCCEEEEeCCCCCCCCEEEECCCC
Confidence 99998776778999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred CCCCCCCCCCCcEEEEEEEEcCCCCCHHHHHHHHHHHhhcC
Q 010831 395 APKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLRN 435 (499)
Q Consensus 395 mP~~~~~~~rGDL~V~~~V~~P~~Ls~~q~~lL~~l~~~~~ 435 (499)
||..+..+.+|||||+|+|++|+.|+++|+++|++|+++.+
T Consensus 316 ~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~l~~~l~~~~~ 356 (374)
T PRK14293 316 VPRLGNPVARGDHLITVKVKIPTRISDEERELLEKLAKIKG 356 (374)
T ss_pred CCCCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHHHhhcc
Confidence 99766544689999999999999999999999999998643
No 28
>PRK14292 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.4e-78 Score=628.43 Aligned_cols=346 Identities=40% Similarity=0.728 Sum_probs=306.8
Q ss_pred cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhcccccccCccccc-CCCCC
Q 010831 77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTV-GGGSS 155 (499)
Q Consensus 77 ~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~~~~~~~f~~i~~AY~vLsd~~kR~~YD~~G~~~~~~~~-~g~~~ 155 (499)
.|||+||||+++|+.+|||+|||+||++||||+|+++.++++|++|++||+||+||.+|++||+||+++..+.. +++.+
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~~~~~~~~ 81 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGMPGGDPFG 81 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccccCCcccC
Confidence 58999999999999999999999999999999998888999999999999999999999999999987642211 11112
Q ss_pred CCccCCCCccccccCCCCCCCCCCCCCCCCcccccccccCcceEEeeeecccccccceeeeeecceeeecccccCccccc
Q 010831 156 AYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKM 235 (499)
Q Consensus 156 ~~~~~~~diF~~fFg~~~gg~~~~~~~~~~~~~~~~~~~g~di~~~l~ltl~ea~~G~~k~i~v~~~~~C~~C~GsG~~~ 235 (499)
++.+++.|+|+.|||+. ++++ +. .+ .+..++.|+.+.+.|+|+|+|+|+++++.+++.+.|+.|+|+|...
T Consensus 82 ~~~~d~~d~f~~~fg~~--~~~~----~~--~~-~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~ 152 (371)
T PRK14292 82 GMGFDPMDIFEQLFGGA--GFGG----GR--GR-RGPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEP 152 (371)
T ss_pred ccCCChHHHHHHhhCCC--CcCC----CC--Cc-ccccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccCC
Confidence 22335668899998742 1110 00 00 1235789999999999999999999999999999999999999987
Q ss_pred Ccc-eeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeeccCceEEEeeeeEEEEeCCCCCCCCEEEEc
Q 010831 236 GSK-MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVV 314 (499)
Q Consensus 236 g~~-~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~~G~~Irl~ 314 (499)
+.. +.+|+.|+|+|.++..+++.+|++++.++|+.|+|+|+.+.++|..|+|.|++.+.++++|.||+|+++|++|+|+
T Consensus 153 ~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~ 232 (371)
T PRK14292 153 GGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVA 232 (371)
T ss_pred CCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCCCceEEeecceEEEEECCCCCCCcEEEEe
Confidence 754 7899999999999888888889999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEeeeCHHhhhCCCEEEEeccCCeEeEEeCCCCCCCcEEEeccCC
Q 010831 315 GEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKG 394 (499)
Q Consensus 315 G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~~~l~ip~gtq~g~~~~l~G~G 394 (499)
|+|++++++. |||||+|+|++|+.|+|+|+||++++.|+|.+|++|+++.|+||||+..|+||+|+++|++++|+|+|
T Consensus 233 G~G~~~~~~~--GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~~~i~g~G 310 (371)
T PRK14292 233 GMGNEGPGGN--GDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQVIEVKPGTQHGDLHRLRGQG 310 (371)
T ss_pred cCcCCCCCCC--CCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEECCCCCEEEecCCCcCCCcEEEECCCC
Confidence 9999976543 99999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred CCCCCCCCCCCcEEEEEEEEcCCCCCHHHHHHHHHHHhhc
Q 010831 395 APKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR 434 (499)
Q Consensus 395 mP~~~~~~~rGDL~V~~~V~~P~~Ls~~q~~lL~~l~~~~ 434 (499)
||..++. .+|||||+|+|.+|+.|+++|+++|++|++..
T Consensus 311 ~p~~~~~-~~GDL~V~~~v~~P~~l~~~q~~ll~~~~~~~ 349 (371)
T PRK14292 311 MPRLQGA-GTGDLIVEYEIAVPKQLSPEAREALEAYARAV 349 (371)
T ss_pred CCCCCCC-CCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 9976543 57999999999999999999999999998653
No 29
>PRK14290 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.8e-77 Score=620.32 Aligned_cols=351 Identities=37% Similarity=0.689 Sum_probs=302.2
Q ss_pred CcCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHHhhcchhhhhhhcccccccCcccccCC-
Q 010831 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP--GATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG- 152 (499)
Q Consensus 76 ~~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~~--~~~~~f~~i~~AY~vLsd~~kR~~YD~~G~~~~~~~~~g- 152 (499)
..|||+||||+++|+.+|||+|||+||++||||+|++. .++++|++|++||+||+||.+|++||+||+.+++++.++
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~~~~~ 81 (365)
T PRK14290 2 AKDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGGSNF 81 (365)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccCCCCc
Confidence 46999999999999999999999999999999999753 688999999999999999999999999999877532111
Q ss_pred CCCCC--ccCCCCccccccCCCCCCCCCCCCCCCCcccccccccCcceEEeeeecccccccceeeeeecceeeecccccC
Q 010831 153 GSSAY--TTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTG 230 (499)
Q Consensus 153 ~~~~~--~~~~~diF~~fFg~~~gg~~~~~~~~~~~~~~~~~~~g~di~~~l~ltl~ea~~G~~k~i~v~~~~~C~~C~G 230 (499)
+.+++ ..++.|+|..|||+.+++ ..++ +.+. ......++.|+.+.|.|||+|+|+|++++|.+.+.+.|+.|+|
T Consensus 82 ~~~~~~~~~~~~d~f~~~fg~~~~~-~~~~--~~~~-~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G 157 (365)
T PRK14290 82 NWDNFTHFSDINDIFNQIFGGNFGS-DFFS--GFGN-QQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSG 157 (365)
T ss_pred cccccccccchhHHHHHHhcCcccc-cccc--cccc-ccCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCcc
Confidence 10111 124568889998742111 0000 0000 1111234789999999999999999999999999999999999
Q ss_pred cccccCcceeeccCCCCcceEEEEeeCCccceee--eeeCCCCCCCCEEEceeeeeccCceEEEeeeeEEEEeCCCCCCC
Q 010831 231 TGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQ--VSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTG 308 (499)
Q Consensus 231 sG~~~g~~~~~C~~C~G~G~v~~~~~~~~g~~~~--~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~~G 308 (499)
+|...+ ...+|+.|+|+|.++..+. +|++.+ ..+|+.|+|.|+++.++|..|+|.|++.+.++++|.||+|+.+|
T Consensus 158 ~g~~~~-~~~~C~~C~G~G~~~~~~~--~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G 234 (365)
T PRK14290 158 TGAKNG-KLITCPTCHGTGQQRIVRG--QGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTVVVNEDISVKIPKGATDN 234 (365)
T ss_pred ccCCCC-CCccCCCCCCcCEEEEEec--cCeEEEEEEEeCCCCCCceeEccCCCCCCCCceeEEEeeEEEEEECCCCCCC
Confidence 999876 6789999999998776653 566543 57999999999999999999999999999999999999999999
Q ss_pred CEEEEcccCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEeeeCHHhhhCCCEEEEeccCCeEeEEeCCCCCCCcEE
Q 010831 309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVL 388 (499)
Q Consensus 309 ~~Irl~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~~~l~ip~gtq~g~~~ 388 (499)
++|+|+|+|+. .++.+|||||+|+|++|+.|+|+|+||++++.|+|.+|++|+++.|+|++|.++|+||+|+++|+++
T Consensus 235 ~~i~~~g~G~~--~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~i~V~Ip~g~~~g~~i 312 (365)
T PRK14290 235 LRLRVKGKGQS--YGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREKYNLKIPEGTQPGEVL 312 (365)
T ss_pred cEEEEccccCC--CCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCceEEEEECCccCCCcEE
Confidence 99999999996 4788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCCCCCCCCCcEEEEEEEEcCCCCCHHHHHHHHHHHhhcCC
Q 010831 389 VLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLRNT 436 (499)
Q Consensus 389 ~l~G~GmP~~~~~~~rGDL~V~~~V~~P~~Ls~~q~~lL~~l~~~~~~ 436 (499)
+|+|+|||..+.. .+|||||+|+|.+|+.|+++|+++|++|+.+++.
T Consensus 313 ri~g~G~p~~~~~-~~GDL~V~~~V~~P~~l~~~~~~ll~~~~~~~~~ 359 (365)
T PRK14290 313 KIKGAGMPHLNGH-GSGDLLVRINVEVPKRLTSKQKELIREFFDIKEN 359 (365)
T ss_pred EECCCCCCCCCCC-CCCCEEEEEEEECCCCCCHHHHHHHHHHHHhhhc
Confidence 9999999976543 5899999999999999999999999999987654
No 30
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-70 Score=549.80 Aligned_cols=329 Identities=42% Similarity=0.744 Sum_probs=296.9
Q ss_pred CcCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhcccccccCcccccCCCCC
Q 010831 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGSS 155 (499)
Q Consensus 76 ~~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~~~~~~~f~~i~~AY~vLsd~~kR~~YD~~G~~~~~~~~~g~~~ 155 (499)
...||+||||+++||++|||||||+||++||||+|++ +.++|++|++||||||||+||++||+||+++++.+++++
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~--~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~~-- 78 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD--AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGGG-- 78 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc--HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCCCC--
Confidence 4679999999999999999999999999999999965 889999999999999999999999999999996543222
Q ss_pred CCccCCCCccccccCCCCCCCCCCCCCCCCcccccccccCcceEEeeeecccccccceeeeeecceeeecccccCccccc
Q 010831 156 AYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKM 235 (499)
Q Consensus 156 ~~~~~~~diF~~fFg~~~gg~~~~~~~~~~~~~~~~~~~g~di~~~l~ltl~ea~~G~~k~i~v~~~~~C~~C~GsG~~~ 235 (499)
++ +. |++||+ +|+.++ + +..+|.|+.+.+.|+|+|+|.|.++++.+++...|+.|+|+|.+.
T Consensus 79 g~----~~-f~~~F~--~g~~~~--------~---~~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgks 140 (337)
T KOG0712|consen 79 GF----GG-FSQFFG--FGGNGG--------R---GRQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKS 140 (337)
T ss_pred CC----cc-HHHhcc--CCCcCc--------c---ccccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCC
Confidence 11 11 888887 222211 1 122399999999999999999999999999999999999999998
Q ss_pred CcceeeccCCCCcceEEEEeeCCccceeee-eeCCCCCCCCEEE--ceeeeeccCceEEEeeeeEEEEeCCCCCCCCEEE
Q 010831 236 GSKMRICSTCGGRGQVMRTDQTPFGLFSQV-SVCPSCGGEGEVI--SEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILR 312 (499)
Q Consensus 236 g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~-~~C~~C~G~G~~i--~~~C~~C~G~G~v~~~k~l~V~IP~Gv~~G~~Ir 312 (499)
++.+ .|+.|.|+|..+++.++.+|+.++. ..|..|+|.|.+| .+.|+.|.|.+++.+.+.++|.|++|+.++++|.
T Consensus 141 g~~~-~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~ki~ 219 (337)
T KOG0712|consen 141 GSAP-KCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQKIT 219 (337)
T ss_pred CCCC-CCCCCCCCCceeEEEeccccccccceeEeccCCCccccccccccCcccccchhhhhhheeeccccCCCcccceee
Confidence 8765 8999999999999999999988876 7899999999984 6899999999999999999999999999999999
Q ss_pred EcccCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEeeeCHHhhhCCCEEEEeccCCe-EeEEeCCC--CCCCcEEE
Q 010831 313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPG--TQPGDVLV 389 (499)
Q Consensus 313 l~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~-~~l~ip~g--tq~g~~~~ 389 (499)
+.|++++.+ +..+||++|.|..++|+.|.|.|+||++...|++.||++|+...+.||||+ +.|.++|| ++||++++
T Consensus 220 f~geadea~-g~~pgD~vl~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi~~~~~~~ 298 (337)
T KOG0712|consen 220 FKGEADEAP-GTKPGDVVLLIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVWETLDGRLLKLSSKPGEVISPGDTKR 298 (337)
T ss_pred eeeeeeecC-CCcCccEEEEecccccccceecccccceeeecchhhccccceEEEEccCCceEEEecCCCceeChhHEEe
Confidence 999999866 556999999999999999999999999999999999999999999999998 58889998 79999999
Q ss_pred eccCCCCCCCCCCCCCcEEEEEEEEcCCCCCHHHHHHHHHHH
Q 010831 390 LAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELA 431 (499)
Q Consensus 390 l~G~GmP~~~~~~~rGDL~V~~~V~~P~~Ls~~q~~lL~~l~ 431 (499)
|+|+|||+.+++ +|||||+|+|+||+ |++++...|+.++
T Consensus 299 v~~~gmp~~~~~--~g~lyi~~~v~fp~-~~~~~~~~l~~~l 337 (337)
T KOG0712|consen 299 VEGEGMPIFRNP--KGDLYIKFEVKFPK-LSPSQLKMLEDLL 337 (337)
T ss_pred ecCCCcccccCC--CCcEEEEEEEEcCC-CChHHHHHHHhhC
Confidence 999999999886 89999999999999 9999999998763
No 31
>PRK14299 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6.9e-61 Score=484.31 Aligned_cols=275 Identities=43% Similarity=0.732 Sum_probs=229.8
Q ss_pred CcCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhcccccccCcccccC----
Q 010831 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG---- 151 (499)
Q Consensus 76 ~~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~~~~~~~f~~i~~AY~vLsd~~kR~~YD~~G~~~~~~~~~---- 151 (499)
..|||+||||+++||.+|||+|||+||++||||+|+++.++++|++|++||+||+||++|+.||+||++++..+..
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~~~~~~~~~~ 82 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGWQGPPP 82 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccccccccCCCC
Confidence 5799999999999999999999999999999999988889999999999999999999999999999886542110
Q ss_pred --CCCCCCc----cCCCCccccccCCCCCCCCCCCCCCCCcccccccccCcceEEeeeecccccccceeeeeecceeeec
Q 010831 152 --GGSSAYT----TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETC 225 (499)
Q Consensus 152 --g~~~~~~----~~~~diF~~fFg~~~gg~~~~~~~~~~~~~~~~~~~g~di~~~l~ltl~ea~~G~~k~i~v~~~~~C 225 (499)
++.++|. .++.|+|+.|||+. +++++++ ..+.. .....++|.|+++.+.|+|+|++.|+++++.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~d~f~~~fgg~-~~~~~~g-~~~~~-~~~~~~~g~dl~~~l~isL~ea~~G~~~~i~l~----- 154 (291)
T PRK14299 83 GPPGGGDFSGFNVGDFSDFFQQLFGGR-GGFGGFG-DLFGS-VGRRARKGRDLEAELPLTLEEAYRGGEKVVEVA----- 154 (291)
T ss_pred CCCCCCCccccCcCCHHHHHHHHhCCC-CCCCCcc-ccccc-ccCCCCCCCCEEEEEEecHHHHhCCCeEEEeeC-----
Confidence 1111121 13346788888631 1111111 00110 011235789999999999999999998877541
Q ss_pred ccccCcccccCcceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeeccCceEEEeeeeEEEEeCCCC
Q 010831 226 EVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGV 305 (499)
Q Consensus 226 ~~C~GsG~~~g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv 305 (499)
.++++|+||+|+
T Consensus 155 --------------------------------------------------------------------g~~~~V~Ip~G~ 166 (291)
T PRK14299 155 --------------------------------------------------------------------GERLSVRIPPGV 166 (291)
T ss_pred --------------------------------------------------------------------CEEEEEecCCCc
Confidence 146889999999
Q ss_pred CCCCEEEEcccCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEeeeCHHhhhCCCEEEEeccCCeEeEEeCCCCCCC
Q 010831 306 STGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPG 385 (499)
Q Consensus 306 ~~G~~Irl~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~~~l~ip~gtq~g 385 (499)
++|++|+++|+|++. |||||+|++++|+.|+|+|+|||+++.|++.+|++|+++.|+|+||.++|+||+++++|
T Consensus 167 ~~G~~ir~~g~G~~~------GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~v~tldG~~~v~ip~~~~~g 240 (291)
T PRK14299 167 REGQVIRLAGKGRQG------GDLYLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRVMTLDGPVEVTIPPRTQAG 240 (291)
T ss_pred CCCcEEEECCCCCCC------CCEEEEEEEcCCCCeEEECCEEEEEEecCHHHHhCCCEEEEECCCCCEEEEeCCCcCCC
Confidence 999999999999863 99999999999999999999999999999999999999999999999899999999999
Q ss_pred cEEEeccCCCCCCCCCCCCCcEEEEEEEEcCCCCCHHHHHHHHHHHhhc
Q 010831 386 DVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR 434 (499)
Q Consensus 386 ~~~~l~G~GmP~~~~~~~rGDL~V~~~V~~P~~Ls~~q~~lL~~l~~~~ 434 (499)
++++|+|+|||.. .+.+|||||+|+|.+|+.|+++|+++|++|+++.
T Consensus 241 ~~~rl~g~G~p~~--~~~~GDL~v~~~V~~P~~l~~~~~~~l~~l~~~~ 287 (291)
T PRK14299 241 RKLRLKGKGWPRG--PAGRGDQYAEVRITIPTRPTPEEERLYKQLAELY 287 (291)
T ss_pred CEEEECCCCCCCC--CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 9999999999963 2468999999999999999999999999998753
No 32
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=100.00 E-value=1.6e-59 Score=477.65 Aligned_cols=286 Identities=31% Similarity=0.562 Sum_probs=237.6
Q ss_pred CcCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhccccccc----CcccccC
Q 010831 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEA----GVKSTVG 151 (499)
Q Consensus 76 ~~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~~~~~~~f~~i~~AY~vLsd~~kR~~YD~~G~~----~~~~~~~ 151 (499)
..|||+||||+++|+.+|||+|||+||++||||+|+++.++++|++|++||++|+||.+|+.||+||.. ++....+
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~~~~~~~~~~~~ 82 (306)
T PRK10266 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQFQ 82 (306)
T ss_pred cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccCcccccccc
Confidence 369999999999999999999999999999999998888999999999999999999999999999864 2221111
Q ss_pred C-CCCCCc-cCCCCccccccCCCCCCCCCCCCCCCCcccccccccCcceEEeeeecccccccceeeeeecceeeeccccc
Q 010831 152 G-GSSAYT-TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCT 229 (499)
Q Consensus 152 g-~~~~~~-~~~~diF~~fFg~~~gg~~~~~~~~~~~~~~~~~~~g~di~~~l~ltl~ea~~G~~k~i~v~~~~~C~~C~ 229 (499)
. +...+. .++.++|+.|||+. ++. . +.....++.|+.+.+.|+|+|+++|+.+++.+++.+
T Consensus 83 ~~~~~~~~~~~~~~~f~~~~g~~----~~~-----~--~~~~~~kg~di~~~v~isLee~~~G~~k~i~~~~~~------ 145 (306)
T PRK10266 83 HGDGQSFNAEDFDDIFSSIFGQH----ARQ-----S--RQRPAARGHDIEIEVAVFLEETLTEHKRTISYNLPV------ 145 (306)
T ss_pred cCCCCCCCCCCHHHHHHHHhCCC----CCC-----C--CCCCCCCCCceEEEEEEEHHHhcCCceEEEEEeccc------
Confidence 0 111121 23446777777631 110 0 011234689999999999999999999988876531
Q ss_pred CcccccCcceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeeccCceEEEeeeeEEEEeCCCCCCCC
Q 010831 230 GTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGS 309 (499)
Q Consensus 230 GsG~~~g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~~G~ 309 (499)
|.|.|.+.. ...++++|.||+|+++|+
T Consensus 146 ---------------~~g~G~~~~--------------------------------------~~~~~~~V~Ip~G~~~G~ 172 (306)
T PRK10266 146 ---------------YNAFGMIEQ--------------------------------------EIPKTLNVKIPAGVGNGQ 172 (306)
T ss_pred ---------------ccCCCeEEE--------------------------------------eeeEEEEEEECCCCcCCc
Confidence 223332110 113679999999999999
Q ss_pred EEEEcccCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEeeeCHHhhhCCCEEEEeccCCeEeEEeCCCCCCCcEEE
Q 010831 310 ILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLV 389 (499)
Q Consensus 310 ~Irl~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~~~l~ip~gtq~g~~~~ 389 (499)
+|+++|+|++..+++.+|||||+|+|++|+.|+|+|+||++++.|++.+|++|+++.|+|+||++.|+||+++++|++++
T Consensus 173 ~i~~~g~G~~~~~~~~~GDl~v~i~v~ph~~f~r~g~DL~~~~~Isl~~al~G~~~~i~~~~g~v~v~ip~g~~~g~~~r 252 (306)
T PRK10266 173 RIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPLAPWEAALGAKVTVPTLKESILLTIPPGSQAGQRLR 252 (306)
T ss_pred EEEEecCCcCCCCCCCCccEEEEEEEcCCCCeEEeCCceEEEEecCHHHHhCCCEEEeeCCCccEEEEeCCCcCCCCEEE
Confidence 99999999998777889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCCCCCCCCcEEEEEEEEcCCCCCHHHHHHHHHHHhhc
Q 010831 390 LAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR 434 (499)
Q Consensus 390 l~G~GmP~~~~~~~rGDL~V~~~V~~P~~Ls~~q~~lL~~l~~~~ 434 (499)
|+|+|||..+ .+|||||+|+|.+|++|+++|+++|++|+++.
T Consensus 253 i~g~G~p~~~---~~GdL~v~~~v~~P~~l~~~q~~l~~~l~~~~ 294 (306)
T PRK10266 253 VKGKGLVSKK---QTGDLYAVLKIVMPPKPDEKTAALWQQLADAQ 294 (306)
T ss_pred ECCCCCCCCC---CCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 9999999642 48999999999999999999999999999863
No 33
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-45 Score=366.62 Aligned_cols=255 Identities=43% Similarity=0.805 Sum_probs=223.6
Q ss_pred ccccccccCcCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhcccccccCcc
Q 010831 68 FGRSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVK 147 (499)
Q Consensus 68 ~~~~~~~~~~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~~~~~~~f~~i~~AY~vLsd~~kR~~YD~~G~~~~~ 147 (499)
++........|||+||||+++|+.+|||+||++|||+||||.|+++++.++|++|.+|||||+|++||++||++|..+.
T Consensus 34 ~~~s~~~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~~- 112 (288)
T KOG0715|consen 34 FHASRIISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQH- 112 (288)
T ss_pred eeecccCCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhcc-
Confidence 3443333344999999999999999999999999999999999999999999999999999999999999999997651
Q ss_pred cccCCCCCCCccCCCCccccccCCCCCCCCCCCCCCCCcccccccccCcceEEeeeecccccccceeeeeecceeeeccc
Q 010831 148 STVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEV 227 (499)
Q Consensus 148 ~~~~g~~~~~~~~~~diF~~fFg~~~gg~~~~~~~~~~~~~~~~~~~g~di~~~l~ltl~ea~~G~~k~i~v~~~~~C~~ 227 (499)
+.+..+++++|..+|++. + .+...+.++.+++.++|+||.+|..+.+.+.....|.+
T Consensus 113 -------~~~~g~~~~~~~~~~~~~------~----------~~~~~~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~~t 169 (288)
T KOG0715|consen 113 -------GEFGGNPFDVFLEFFGGK------M----------NKRVPDKDQYYDLSLDFKEAVRGSKKRISFNVLSDCET 169 (288)
T ss_pred -------ccccCCccchHHHhhccc------c----------cccccCcccccccccCHHHHhhccccceEEEeeccccc
Confidence 122347899999998740 1 12245678899999999999999999999999999999
Q ss_pred ccCcccccCcceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeeccCceEEEeeeeEEEEeCCCCCC
Q 010831 228 CTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVST 307 (499)
Q Consensus 228 C~GsG~~~g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~~ 307 (499)
|.|.|..++.+...|..|.|+|.+......+|.. . +|..|.|.|.++.+.|..|.|.|.|...+.+.|.||+|+.+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~---~-~~~~c~~~~~~~~~~c~~~~g~~~v~~~k~i~i~~~~g~~~ 245 (288)
T KOG0715|consen 170 CFGSGAEEGAKRESCKTCSGRGLVSNPKEDPFIL---Y-TCSYCLGRGLVLRDNCQACSGAGQVRRAKDIMIVLPAGVRS 245 (288)
T ss_pred ccCcCcccccccccchhhhCcccccccccCCcce---e-ecccccccceeccchHHHhhcchhhhhheeEEeecCccccc
Confidence 9999999999999999999999776654444432 2 99999999999999999999999999999999999999999
Q ss_pred CCEEEEcccCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEeeeCHHh
Q 010831 308 GSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLD 358 (499)
Q Consensus 308 G~~Irl~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~e 358 (499)
+.+|++.+.|.. ||+|.+.|.+++.|+|+|.|+++++.|++++
T Consensus 246 ~~~l~~~~~~~~--------~l~v~~~v~~~~~~~r~~~~i~~~~~i~~~~ 288 (288)
T KOG0715|consen 246 ADTLRFAGHGND--------DLFVRLIVAKSPSFRREGKDILYDAIISFTQ 288 (288)
T ss_pred ccEEEEecCCcc--------eEEEEEEeccCcccccccCcccccccccccC
Confidence 999999998764 9999999999999999999999999999864
No 34
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=100.00 E-value=9.3e-42 Score=367.35 Aligned_cols=125 Identities=17% Similarity=0.187 Sum_probs=114.2
Q ss_pred EEEeeeeEEEEeCCCCCCCCEEEEcccCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEeeeCHHhhhCCCEEEEec
Q 010831 290 RIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKT 369 (499)
Q Consensus 290 ~v~~~k~l~V~IP~Gv~~G~~Irl~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~I~t 369 (499)
.+...++|+|+||+|+++|++|||+|+|+.+++ + +|||||+|++++|+.|+|+|+|||+++.|+|.+||||+++.|+|
T Consensus 692 tvkE~ktLeVkIPpGVkdGqkIRf~GeGDegpg-g-~GDLyVvIkVKPHp~FrRdGdDL~~~v~ISL~EALLGgtIeIpT 769 (871)
T TIGR03835 692 TTNEAITLEIQLPITSQLNISAIFKGFGHDFGN-G-CGDLKVVFKVIPSNFFQIKNDGLHVAALVDPLVAYNGGIIDVFG 769 (871)
T ss_pred eeeeeEEEEEecCCCCCCCCEEEeccccCCCCC-C-CCCEEEEEEEcCCCCeEEECCeEEEEEecCHHHHhcCCEEEeeC
Confidence 455678999999999999999999999998653 3 49999999999999999999999999999999999999999999
Q ss_pred cCCeEeEEeCCCCCCCcEEEeccCCCCCCCCCCCCCcEEEEEEEE-cCCC
Q 010831 370 VEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVT-IPNR 418 (499)
Q Consensus 370 ldG~~~l~ip~gtq~g~~~~l~G~GmP~~~~~~~rGDL~V~~~V~-~P~~ 418 (499)
|||++.|+||+|+++|++++|+|+|||..+ +.||||||+|+|. ++++
T Consensus 770 LDGrVkLkIPpgTqpGqvLRIkGKGMP~~~--~~RGDLyV~f~V~~~~k~ 817 (871)
T TIGR03835 770 PNKLFNVRIPGGIKVNDQVIFKDLGLTKTK--YDKGSLIVHLYYSSVMKK 817 (871)
T ss_pred CCCCEEEeeCCCCCCCcEEEECCCCCCCCC--CCCCCEEEEEEEeecccc
Confidence 999989999999999999999999999543 4689999999997 5554
No 35
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-43 Score=351.41 Aligned_cols=315 Identities=34% Similarity=0.490 Sum_probs=241.8
Q ss_pred ccccCcCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhcchhhhhhhcccccccCccccc
Q 010831 72 VVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTV 150 (499)
Q Consensus 72 ~~~~~~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~-~~~~~~~f~~i~~AY~vLsd~~kR~~YD~~G~~~~~~~~ 150 (499)
.+...+|||+||||+++|+.+|||+||||||++||||+|+ +|.|.++|++|+.||||||||++|+.||+||++++....
T Consensus 11 ~v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~~ 90 (336)
T KOG0713|consen 11 AVLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDEN 90 (336)
T ss_pred hhhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhcccc
Confidence 4556789999999999999999999999999999999999 489999999999999999999999999999999987431
Q ss_pred CCCCCCCccCCCCccccccCCCCCCCCCCCCCCCCcccccccccCcceEEeeeecccccccceeeeeecceeeecccccC
Q 010831 151 GGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTG 230 (499)
Q Consensus 151 ~g~~~~~~~~~~diF~~fFg~~~gg~~~~~~~~~~~~~~~~~~~g~di~~~l~ltl~ea~~G~~k~i~v~~~~~C~~C~G 230 (499)
..+.++- +..++|..||+..+..+++. .......+|.++...+..+++++|.|...+..-...+.|. |.|
T Consensus 91 ~~~~~g~--~~~~~f~~~f~dfg~~~~g~-------~~~e~~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~-~~g 160 (336)
T KOG0713|consen 91 KDGEGGG--GGNDIFSAFFGDFGVTVGGN-------PLEEALPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKP-APG 160 (336)
T ss_pred cccccCC--cccchHHHhhcccccccCCC-------cccCCCCCCceEEeehhhchhhhhcccHHHHHhccCceee-cCc
Confidence 0011110 11477777777421111111 1111256899999999999999999987666555544443 222
Q ss_pred cccccCcceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeeccCceEEEeeeeEEEEeCCCCCCCCE
Q 010831 231 TGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSI 310 (499)
Q Consensus 231 sG~~~g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~~G~~ 310 (499)
+- .|+-+ ..+..++...|.+++.+ ...|.+|.+.+.+.++++++|.+..|..+|..
T Consensus 161 ~~-----------~~~~~-~~~~~~~~~~g~~~~~q------------~~~~~~~~~~k~~~e~~~~~~~~~~~~~~~~~ 216 (336)
T KOG0713|consen 161 TR-----------KCNCR-LEMFTQQEGPGRFQMLQ------------EAVCDECPNVKLVLEEDPLEVEFERGDADGPE 216 (336)
T ss_pred cc-----------ccCCh-hhheeeccCCChhhhhh------------hhhhccCCccceeecCCceeeeeeecccCCce
Confidence 11 11111 11222223333333221 23555555567777889999999999999999
Q ss_pred EEEcccCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEeeeCHHhhhCCCEEEEeccCCe-EeEEeCCCCCCCcEEE
Q 010831 311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPGTQPGDVLV 389 (499)
Q Consensus 311 Irl~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~-~~l~ip~gtq~g~~~~ 389 (499)
.....+|.+.. -+.+||+++.+...+|+.|.|.++||++++.|++.+++.|+..++.++|+. +.+.-..++-|+..++
T Consensus 217 ~~~~~~~~~h~-~~~~gD~~f~~~~y~~~~~~~k~~~~~~n~~~sl~~~~v~~~~e~~~~d~~~~~~~r~~~~~p~~~~~ 295 (336)
T KOG0713|consen 217 EIFELEGEPHI-DGVPGDLFFKIVSYTHPRFERKGDDLYTNVTISLEAALVGFEMEILHLDGHYVEVSRKKITWPGARTR 295 (336)
T ss_pred eeeeccCCcce-ecccCCceeeeEEecccceecCccchhhHHHHHHHHHHHHHHHHhhccchhhhhhhhhhccccchhhh
Confidence 99999998754 578999999999999999999999999999999999999999999999997 3555556789999999
Q ss_pred eccCCCCCCCCCCCCCcEEEEEEEEcCC-CCCH
Q 010831 390 LAKKGAPKLNKPSIRGDHLFTVKVTIPN-RISA 421 (499)
Q Consensus 390 l~G~GmP~~~~~~~rGDL~V~~~V~~P~-~Ls~ 421 (499)
..++|||...+....|.++++|.+.+|. .++.
T Consensus 296 ~~~~~~~~l~~~~~~~~~~~t~~~~~~~~~~~~ 328 (336)
T KOG0713|consen 296 KKGEGMPLLKNRNEKGNLYVTFDVEFPKSSLSD 328 (336)
T ss_pred hhhccchhhhccchhcceeEEecccCcccccch
Confidence 9999999887767789999999999995 4665
No 36
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.1e-22 Score=203.38 Aligned_cols=263 Identities=33% Similarity=0.486 Sum_probs=180.4
Q ss_pred cCcCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHHhhcchhhhhhhcccccccCcccccC-
Q 010831 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP--GATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVG- 151 (499)
Q Consensus 75 ~~~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~~--~~~~~f~~i~~AY~vLsd~~kR~~YD~~G~~~~~~~~~- 151 (499)
|..|||++|+|.+.|+.+|||+||+++|++||||+|+.+ .++++|++|.+||++|+|+.+|..||+||++++.+...
T Consensus 1 ~~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~~~~~~ 80 (306)
T KOG0714|consen 1 MGKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLKGGGSF 80 (306)
T ss_pred CcccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCccccccCCCC
Confidence 467999999999999999999999999999999999876 56668999999999999999999999999976664211
Q ss_pred -CC--CC---CCccCCCCccccccCCCCCCCCC---------------------CCCCCCCcc--------cccccccCc
Q 010831 152 -GG--SS---AYTTNPFDLFETFFGPSMGGFPG---------------------MNQTGFRTR--------RRSTVTKGE 196 (499)
Q Consensus 152 -g~--~~---~~~~~~~diF~~fFg~~~gg~~~---------------------~~~~~~~~~--------~~~~~~~g~ 196 (499)
+. .+ ....++.++|.+|||........ ......... ......+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (306)
T KOG0714|consen 81 SSSFTSELFYFLFRKPDKDFYEFFGVSSPFSGSKKGYRDKNAAPGEEAFKSEGKAFQSLYGPKRKQYDSSGSDRSARQSP 160 (306)
T ss_pred CCCCCCCcceeccCchhhhHHHHhCCCCCCccccccCCccccccCccccccccccccccCCCcccccccccccccccCCC
Confidence 10 11 11234456788888732110000 000000000 000000111
Q ss_pred ceEEeeeecccccccceeeeeecceeeecccccCcccccCcceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCE
Q 010831 197 DLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGE 276 (499)
Q Consensus 197 di~~~l~ltl~ea~~G~~k~i~v~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~ 276 (499)
.+...+.+++++.+.+..+...+.+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------------- 187 (306)
T KOG0714|consen 161 PVEHPLRVSLEDLYKGESKKMKISRQS----------------------------------------------------- 187 (306)
T ss_pred CccCCcceeHHHhccccceeeeccccc-----------------------------------------------------
Confidence 122222223444444433333222110
Q ss_pred EEceeeeeccCceEEEeeeeEEEEeCCCCCCCCEEEEcccCCCCCCCCCCccEEEEEEEEeccccccCCcceEEE--eee
Q 010831 277 VISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST--ISI 354 (499)
Q Consensus 277 ~i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~~G~~Irl~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL~~~--~~I 354 (499)
....... .......+.+.+.+++..|..+....+|+..+. ..|-++++.+..++|..|.++++||+.. ..|
T Consensus 188 --~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~ 260 (306)
T KOG0714|consen 188 --FTSNGRE----GSSRSRYLSISIKPGWKEGTKITFPEEGDEEPG-ILPADIEFVVDEKPHPLFSRDGNDLSYSSGYEI 260 (306)
T ss_pred --ccCCccc----ccCccceeEEeccCCcccccceeccccccccCC-cCcceeEEEEecCCcccccCCCccceeccccee
Confidence 0000000 112356788999999999999999999987653 6788999999999999999999999999 999
Q ss_pred CHHhhhCCCEEEEeccCCeE-eEEeC-CCCCCCcEEEeccCCCCC
Q 010831 355 SYLDAIMGTVVKVKTVEGIS-ELQVP-PGTQPGDVLVLAKKGAPK 397 (499)
Q Consensus 355 sl~eAllG~~~~I~tldG~~-~l~ip-~gtq~g~~~~l~G~GmP~ 397 (499)
++.+|++|....++++++.. .+.+. .-..++...+++++|+|.
T Consensus 261 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (306)
T KOG0714|consen 261 SLKEALLGVTVFVPTLDGRSYSLSINKDLIEPGEEDVIPGEGLPC 305 (306)
T ss_pred ehhhhhcCcceeeecccCccccCcccccccCCCceeeecCCCCCC
Confidence 99999999999999999973 44444 456899999999999985
No 37
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=99.86 E-value=7.8e-22 Score=162.53 Aligned_cols=80 Identities=38% Similarity=0.737 Sum_probs=70.6
Q ss_pred ceEEEeeeCHHhhhCCCEEEEeccCC-eEeEEeCCCCCCCcEEEeccCCCCCCCCCCCCCcEEEEEEEEcCCCCCHHHHH
Q 010831 347 DLFSTISISYLDAIMGTVVKVKTVEG-ISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERE 425 (499)
Q Consensus 347 DL~~~~~Isl~eAllG~~~~I~tldG-~~~l~ip~gtq~g~~~~l~G~GmP~~~~~~~rGDL~V~~~V~~P~~Ls~~q~~ 425 (499)
|||++++|+++||++|+++.|+|+|| .++|+||+++++|++++|+|+|||...+++.+|||||+|+|.+|++||++||+
T Consensus 1 DL~~~~~I~l~~al~G~~i~i~~l~g~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls~~qk~ 80 (81)
T PF01556_consen 1 DLYCTIPISLKEALLGGTISIPTLDGKTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLSPEQKE 80 (81)
T ss_dssp EEEEEEEEEHHHHHH-EEEEEE-TTS-EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTSHHHHH
T ss_pred CeEEEEEeCHHHHhCCCEEEEECCCCCEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHhc
Confidence 89999999999999999999999999 67999999999999999999999998776689999999999999999999998
Q ss_pred H
Q 010831 426 L 426 (499)
Q Consensus 426 l 426 (499)
|
T Consensus 81 l 81 (81)
T PF01556_consen 81 L 81 (81)
T ss_dssp H
T ss_pred C
Confidence 6
No 38
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.2e-19 Score=176.15 Aligned_cols=72 Identities=60% Similarity=0.980 Sum_probs=68.6
Q ss_pred CcCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhcchhhhhhhcccccccCcc
Q 010831 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVK 147 (499)
Q Consensus 76 ~~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~-~~~~~~f~~i~~AY~vLsd~~kR~~YD~~G~~~~~ 147 (499)
..|+|+||||+++|+.++||||||+||++||||++++ |++.++|++||+||+||+||.+|..||.||+.++.
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~ 102 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLK 102 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHH
Confidence 5689999999999999999999999999999999986 88999999999999999999999999999987765
No 39
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2.6e-18 Score=164.11 Aligned_cols=69 Identities=59% Similarity=0.862 Sum_probs=64.2
Q ss_pred ccCcCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc--hHHHHHHHHHHHhhcchhhhhhhccccc
Q 010831 74 CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG--ATEKFKEISAAYEVLSDDKKRAMYDQYG 142 (499)
Q Consensus 74 ~~~~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~~~--~~~~f~~i~~AY~vLsd~~kR~~YD~~G 142 (499)
.+..|||+||||+++|+..|||+|||++|++||||+++... ++++|++|++||++|+|+.+|+.||+++
T Consensus 3 ~~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 3 SDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred hhhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 45679999999999999999999999999999999998543 8899999999999999999999999973
No 40
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.75 E-value=8.5e-19 Score=194.23 Aligned_cols=77 Identities=36% Similarity=0.587 Sum_probs=71.0
Q ss_pred ccccCcCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhcccccccCccc
Q 010831 72 VVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKS 148 (499)
Q Consensus 72 ~~~~~~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~~~~~~~f~~i~~AY~vLsd~~kR~~YD~~G~~~~~~ 148 (499)
.+....+||+||||+++|+..|||+|||+||++||||+++++.+.++|++|++||+|||||.+|+.||+||.+++..
T Consensus 568 ~~~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~~ 644 (1136)
T PTZ00341 568 IEIPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIKG 644 (1136)
T ss_pred ccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccccCC
Confidence 33456899999999999999999999999999999999987778899999999999999999999999999987653
No 41
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.3e-18 Score=178.90 Aligned_cols=73 Identities=55% Similarity=0.946 Sum_probs=68.5
Q ss_pred CcCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc----chHHHHHHHHHHHhhcchhhhhhhcccccccCccc
Q 010831 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP----GATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKS 148 (499)
Q Consensus 76 ~~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~~----~~~~~f~~i~~AY~vLsd~~kR~~YD~~G~~~~~~ 148 (499)
+.|||.+|+|+++||.+|||+||||+++.||||+..++ .|++.|+.|.+||||||||++|++||.||+.|++.
T Consensus 8 e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~t 84 (546)
T KOG0718|consen 8 EIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLKT 84 (546)
T ss_pred hhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhccccc
Confidence 46899999999999999999999999999999998754 58899999999999999999999999999999983
No 42
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=5e-18 Score=174.73 Aligned_cols=74 Identities=50% Similarity=0.728 Sum_probs=67.7
Q ss_pred ccCcCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHhhcchhhhhhhcccccccCcc
Q 010831 74 CASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVK 147 (499)
Q Consensus 74 ~~~~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~--~~~~~~f~~i~~AY~vLsd~~kR~~YD~~G~~~~~ 147 (499)
.++..||+||||.++|++.|||++||+||++||||+||+ .++.++|+.|+.||+|||||+.|++||..-+.-+.
T Consensus 5 ~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~ 80 (508)
T KOG0717|consen 5 FKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILR 80 (508)
T ss_pred hhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhc
Confidence 356789999999999999999999999999999999986 57889999999999999999999999987765444
No 43
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.70 E-value=1.2e-17 Score=130.96 Aligned_cols=62 Identities=53% Similarity=0.879 Sum_probs=59.0
Q ss_pred CcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc--hHHHHHHHHHHHhhcchhhhhhhcc
Q 010831 78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPG--ATEKFKEISAAYEVLSDDKKRAMYD 139 (499)
Q Consensus 78 d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~~~--~~~~f~~i~~AY~vLsd~~kR~~YD 139 (499)
|||+||||+++++.+|||+||+++++++|||++.... +.+.|..|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6999999999999999999999999999999987654 7899999999999999999999998
No 44
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.6e-17 Score=166.56 Aligned_cols=88 Identities=49% Similarity=0.792 Sum_probs=76.7
Q ss_pred CcCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhcchhhhhhhcccccccCcccccCCCC
Q 010831 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK-EPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGS 154 (499)
Q Consensus 76 ~~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~-~~~~~~~f~~i~~AY~vLsd~~kR~~YD~~G~~~~~~~~~g~~ 154 (499)
..|||+||||+.+|+.+||+||||+.|++||||+|| +|.|.++|+++.+||+||+|+.+|+.||.+|..+....
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~----- 78 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ----- 78 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch-----
Confidence 679999999999999999999999999999999999 58899999999999999999999999999997654321
Q ss_pred CCCccCCCCccccccC
Q 010831 155 SAYTTNPFDLFETFFG 170 (499)
Q Consensus 155 ~~~~~~~~diF~~fFg 170 (499)
. -.+++++|...|+
T Consensus 79 -~-~~d~~~~~r~~f~ 92 (296)
T KOG0691|consen 79 -G-REDQADGFRKKFG 92 (296)
T ss_pred -h-hhhHHHHHHHHhh
Confidence 0 1355677777776
No 45
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.65 E-value=1.8e-16 Score=158.63 Aligned_cols=71 Identities=49% Similarity=0.764 Sum_probs=64.3
Q ss_pred CcCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc----chHHHHHHHHHHHhhcchhhhhhhcccccccCcc
Q 010831 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEP----GATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVK 147 (499)
Q Consensus 76 ~~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~~----~~~~~f~~i~~AY~vLsd~~kR~~YD~~G~~~~~ 147 (499)
.+|||.||||.++|+..||.|||||||.+||||...++ .++++|..|..|-|||+||++|++||. |++-++
T Consensus 393 kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn-GeDPLD 467 (504)
T KOG0624|consen 393 KRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN-GEDPLD 467 (504)
T ss_pred cchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC-CCCCCC
Confidence 67999999999999999999999999999999988764 478999999999999999999999998 554443
No 46
>PHA03102 Small T antigen; Reviewed
Probab=99.64 E-value=1.7e-16 Score=144.98 Aligned_cols=83 Identities=24% Similarity=0.353 Sum_probs=69.7
Q ss_pred cCcchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhcccccccCcccccCCCC
Q 010831 77 GDYYATLGVPKSA--SGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGGGS 154 (499)
Q Consensus 77 ~d~Y~vLgv~~~a--s~~eIk~ayrkla~~~HPD~~~~~~~~~~f~~i~~AY~vLsd~~kR~~YD~~G~~~~~~~~~g~~ 154 (499)
..+|+||||+++| |.+|||+|||++|+++|||+++ .+++|++|++||++|+|+.+|..||.+|........
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg---~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~~~~---- 77 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGG---DEEKMKELNTLYKKFRESVKSLRDLDGEEDSSSEEE---- 77 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCc---hhHHHHHHHHHHHHHhhHHHhccccccCCccccccc----
Confidence 4689999999999 9999999999999999999974 458999999999999999999999999976543210
Q ss_pred CCCccCCCCccccccC
Q 010831 155 SAYTTNPFDLFETFFG 170 (499)
Q Consensus 155 ~~~~~~~~diF~~fFg 170 (499)
..+.++|..+||
T Consensus 78 ----~~~~~~f~~~fg 89 (153)
T PHA03102 78 ----DVPSGYVGATFG 89 (153)
T ss_pred ----ccHHHHhhhhcC
Confidence 125566666665
No 47
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.8e-16 Score=150.79 Aligned_cols=69 Identities=51% Similarity=0.828 Sum_probs=63.8
Q ss_pred CcCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---cchHHHHHHHHHHHhhcchhhhhhhccccccc
Q 010831 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE---PGATEKFKEISAAYEVLSDDKKRAMYDQYGEA 144 (499)
Q Consensus 76 ~~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~---~~~~~~f~~i~~AY~vLsd~~kR~~YD~~G~~ 144 (499)
..|+|+||||.++|+.+||++||++||+++|||+++. .++.++|+.++.||.||+|.++|++||+.|.-
T Consensus 13 ~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~i 84 (264)
T KOG0719|consen 13 KKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSI 84 (264)
T ss_pred ccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCC
Confidence 4599999999999999999999999999999999963 46889999999999999999999999998753
No 48
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.60 E-value=1e-15 Score=118.25 Aligned_cols=58 Identities=66% Similarity=0.950 Sum_probs=53.9
Q ss_pred cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CcchHHHHHHHHHHHhhcchhhh
Q 010831 77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNK--EPGATEKFKEISAAYEVLSDDKK 134 (499)
Q Consensus 77 ~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~--~~~~~~~f~~i~~AY~vLsd~~k 134 (499)
.|||+||||+++++.++||+||+++++++|||++. .+.+.+.|++|++||++|+||.+
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence 48999999999999999999999999999999997 46788999999999999999853
No 49
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=3.5e-15 Score=153.32 Aligned_cols=118 Identities=33% Similarity=0.692 Sum_probs=91.4
Q ss_pred eeeecccccCcccccCcc-------eeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeee---------
Q 010831 221 HLETCEVCTGTGAKMGSK-------MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRK--------- 284 (499)
Q Consensus 221 ~~~~C~~C~GsG~~~g~~-------~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~--------- 284 (499)
..++|++|+|+|.....+ .++|++|+|+|.++. .+|++|+|.|.+....-.+
T Consensus 158 ~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~------------~pC~~C~G~G~v~~~~~i~V~IPaGv~~ 225 (371)
T COG0484 158 DPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIK------------DPCGKCKGKGRVKKKKSISVNIPAGVDD 225 (371)
T ss_pred CCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECC------------CCCCCCCCCCeEeeeeEEEEECCCCCcc
Confidence 568999999999643322 689999999998864 7899999999965432222
Q ss_pred -----ccCceEE-------------------------------------------------EeeeeEEEEeCCCCCCCCE
Q 010831 285 -----CSGEGRI-------------------------------------------------RLKKNIKVKVPPGVSTGSI 310 (499)
Q Consensus 285 -----C~G~G~v-------------------------------------------------~~~k~l~V~IP~Gv~~G~~ 310 (499)
..|+|.. +....++|+||||+++|++
T Consensus 226 g~~ir~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~~~l~ip~Gtq~G~~ 305 (371)
T COG0484 226 GDRIRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGRVKLKIPAGTQTGEV 305 (371)
T ss_pred CCEEEEecCcccCCCCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCCEEEecCCCCccCcE
Confidence 2222221 2334489999999999999
Q ss_pred EEEcccCCCCCCCCCCccEEEEEEEEeccccccCCcceEE
Q 010831 311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFS 350 (499)
Q Consensus 311 Irl~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL~~ 350 (499)
+||+|+|.+..++...|||||+|+|..+..+......|+.
T Consensus 306 ~rl~gkG~p~~~~~~~GDl~v~v~v~~P~~ls~~q~~lL~ 345 (371)
T COG0484 306 FRLRGKGMPKLRSGGRGDLYVRVKVETPKNLSDEQKELLE 345 (371)
T ss_pred EEEcCCCccccCCCCcCCEEEEEEEEcCCCCCHHHHHHHH
Confidence 9999999998888888999999999999887766665543
No 50
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.58 E-value=2.7e-15 Score=113.76 Aligned_cols=54 Identities=70% Similarity=1.073 Sum_probs=51.3
Q ss_pred CcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhcch
Q 010831 78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSD 131 (499)
Q Consensus 78 d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~-~~~~~~f~~i~~AY~vLsd 131 (499)
|||+||||+++++.++||++||+|+++||||++.. +.+.+.|++|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 69999999999999999999999999999999976 6688999999999999986
No 51
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=2.4e-15 Score=142.09 Aligned_cols=72 Identities=42% Similarity=0.676 Sum_probs=66.7
Q ss_pred CcCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhcchhhhhhhcccccccCcc
Q 010831 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE-PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVK 147 (499)
Q Consensus 76 ~~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~-~~~~~~f~~i~~AY~vLsd~~kR~~YD~~G~~~~~ 147 (499)
..|+||||||++.|++.|||||||+|.++||||++++ .+.++.|.+|+.||+.|+|+..|..|..||+....
T Consensus 98 ~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDGp 170 (230)
T KOG0721|consen 98 KFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDGP 170 (230)
T ss_pred cCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCCc
Confidence 4599999999999999999999999999999999987 67788899999999999999999999999987543
No 52
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=99.55 E-value=8.4e-15 Score=115.99 Aligned_cols=65 Identities=49% Similarity=1.107 Sum_probs=55.7
Q ss_pred cccccCcccccCcceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEE-ceeeeeccCce
Q 010831 225 CEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVI-SEYCRKCSGEG 289 (499)
Q Consensus 225 C~~C~GsG~~~g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i-~~~C~~C~G~G 289 (499)
|+.|+|+|++++..+.+|+.|+|+|++++.++++++++++.++|+.|+|+|++| .++|+.|+|+|
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g 66 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCKGSG 66 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence 899999999999999999999999999999999999999999999999999999 99999999986
No 53
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.3e-14 Score=148.45 Aligned_cols=89 Identities=43% Similarity=0.676 Sum_probs=73.0
Q ss_pred cCcCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHhhcchhhhhhhcccccccCcccccCC
Q 010831 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKSTVGG 152 (499)
Q Consensus 75 ~~~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~--~~~~~~f~~i~~AY~vLsd~~kR~~YD~~G~~~~~~~~~g 152 (499)
.-+|||.||||+++|+..|||+|||++|+.+|||+|.. .+++.+|++|-+||.+|+||.+|..||..- .--..+ ++
T Consensus 371 kRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~-dle~~~-~~ 448 (486)
T KOG0550|consen 371 KRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQ-DLEEVG-SG 448 (486)
T ss_pred hhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccccc-chhhhc-CC
Confidence 35799999999999999999999999999999999863 578899999999999999999999999732 211111 11
Q ss_pred CCCCCccCCCCccccc
Q 010831 153 GSSAYTTNPFDLFETF 168 (499)
Q Consensus 153 ~~~~~~~~~~diF~~f 168 (499)
+ + +++|+++|..|
T Consensus 449 ~-a--~~dp~~~~~a~ 461 (486)
T KOG0550|consen 449 G-A--GFDPFNIFRAF 461 (486)
T ss_pred C-c--CcChhhhhhhc
Confidence 1 2 45888888877
No 54
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.46 E-value=2.6e-13 Score=142.18 Aligned_cols=119 Identities=34% Similarity=0.686 Sum_probs=89.8
Q ss_pred eeecccccCcccccC-----cceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeec-----------
Q 010831 222 LETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC----------- 285 (499)
Q Consensus 222 ~~~C~~C~GsG~~~g-----~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C----------- 285 (499)
...|+.|+|+|.... ....+|+.|+|+|.++. ..|+.|+|.|.+......+.
T Consensus 159 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~ 226 (371)
T PRK10767 159 PKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIK------------DPCKKCHGQGRVEKEKTLSVKIPAGVDTGDR 226 (371)
T ss_pred CccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECC------------CCCCCCCCCceEeeeeeEEEecCCCCCCCcE
Confidence 457999999996421 23568999999998753 67999999998654321111
Q ss_pred ---cCc----------eEE---------------------------------------EeeeeEEEEeCCCCCCCCEEEE
Q 010831 286 ---SGE----------GRI---------------------------------------RLKKNIKVKVPPGVSTGSILRV 313 (499)
Q Consensus 286 ---~G~----------G~v---------------------------------------~~~k~l~V~IP~Gv~~G~~Irl 313 (499)
.|. |.+ .....++|+||+|+++|++++|
T Consensus 227 i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~i~v~ip~g~~~g~~~~i 306 (371)
T PRK10767 227 IRLSGEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGRVKLKIPEGTQTGKLFRL 306 (371)
T ss_pred EEEecCccCCCCCCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEecCCCcEEEEeCCCCCCCCEEEE
Confidence 221 111 1133689999999999999999
Q ss_pred cccCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEe
Q 010831 314 VGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTI 352 (499)
Q Consensus 314 ~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL~~~~ 352 (499)
+|+|.+...++..|||||+|+|..|+.|++++.+|+.++
T Consensus 307 ~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~~~~ll~~l 345 (371)
T PRK10767 307 RGKGVKSVRSGARGDLYCQVVVETPVNLTKRQKELLEEF 345 (371)
T ss_pred CCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 999998765667899999999999999999999887543
No 55
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=9.3e-15 Score=140.46 Aligned_cols=92 Identities=34% Similarity=0.631 Sum_probs=77.0
Q ss_pred eceeeeecccccccCCCCCCCCCCCCCCccccccccccccCcCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcch
Q 010831 36 HKNFAALTLSADSCPFGGSKLNSSNARSSTYRFGRSVVCASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGA 115 (499)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~~~~ 115 (499)
+..|++..+...+|.+.+ +.....+-..|+|+||||++.|+.+||+||||+||++||||+++++++
T Consensus 6 t~rw~Lvl~~Llp~l~vg--------------l~egLYCG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~ 71 (329)
T KOG0722|consen 6 TERWCLVLILLLPSLFVG--------------LSEGLYCGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPES 71 (329)
T ss_pred chHHHHHHHHHHHHHHHh--------------hhhhhcccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchh
Confidence 345666665555555443 222355667899999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHhhcchhhhhhhcccc
Q 010831 116 TEKFKEISAAYEVLSDDKKRAMYDQY 141 (499)
Q Consensus 116 ~~~f~~i~~AY~vLsd~~kR~~YD~~ 141 (499)
.+.|+.|.+|||+|.|.+.|..||-+
T Consensus 72 k~~F~~iAtayeilkd~e~rt~ydya 97 (329)
T KOG0722|consen 72 KKLFVKIATAYEILKDNETRTQYDYA 97 (329)
T ss_pred hhhhhhhhcccccccchhhHHhHHHH
Confidence 89999999999999999999999974
No 56
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.43 E-value=3.1e-13 Score=141.51 Aligned_cols=118 Identities=31% Similarity=0.608 Sum_probs=89.4
Q ss_pred eeecccccCcccccCc---------ceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeee---------
Q 010831 222 LETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCR--------- 283 (499)
Q Consensus 222 ~~~C~~C~GsG~~~g~---------~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~--------- 283 (499)
...|+.|+|+|..... ...+|+.|+|+|+++. ..|..|+|.|.+....-.
T Consensus 169 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~ 236 (369)
T PRK14282 169 YVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPG------------EYCHECGGSGRIRRRVRTTVKIPAGVE 236 (369)
T ss_pred CcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCC------------CCCCCCCCceeEEEEEEEEEEeCCCCC
Confidence 4679999999965321 3568999999998753 679999999975432111
Q ss_pred -----eccCc----------eEE----------------------------------------EeeeeEEEEeCCCCCCC
Q 010831 284 -----KCSGE----------GRI----------------------------------------RLKKNIKVKVPPGVSTG 308 (499)
Q Consensus 284 -----~C~G~----------G~v----------------------------------------~~~k~l~V~IP~Gv~~G 308 (499)
.-.|+ |.+ ...++++|+||+|+++|
T Consensus 237 ~G~~i~~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~i~v~Ip~g~~~g 316 (369)
T PRK14282 237 DGTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTMLKIPPGTQPE 316 (369)
T ss_pred CCCEEEEecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeCCCCcEEEEEeCCCcCCC
Confidence 11111 111 12356899999999999
Q ss_pred CEEEEcccCCCCCCCCCCccEEEEEEEEeccccccCCcceEEE
Q 010831 309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST 351 (499)
Q Consensus 309 ~~Irl~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL~~~ 351 (499)
++|+|+|+|++...++.+|||||+|+|+.|+.|++++.+|+..
T Consensus 317 ~~iri~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~~~~ll~~ 359 (369)
T PRK14282 317 TVFRLKGKGLPNMRYGRRGDLIVNVHVEIPKRLSREERKLLKE 359 (369)
T ss_pred CEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 9999999999865556689999999999999999999988754
No 57
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.41 E-value=2.2e-13 Score=127.00 Aligned_cols=66 Identities=30% Similarity=0.450 Sum_probs=57.1
Q ss_pred CcCcchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc----hHHHHHHHHHHHhhcchhhhhhhcccc
Q 010831 76 SGDYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKEPG----ATEKFKEISAAYEVLSDDKKRAMYDQY 141 (499)
Q Consensus 76 ~~d~Y~vLgv~~~--as~~eIk~ayrkla~~~HPD~~~~~~----~~~~f~~i~~AY~vLsd~~kR~~YD~~ 141 (499)
+.|||++|||++. ++..+|+++||+|+++||||++..+. +.+.+..||+||++|+||.+|+.|+.-
T Consensus 1 ~~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~ 72 (166)
T PRK01356 1 MQNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLL 72 (166)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3689999999996 78999999999999999999986421 234578999999999999999999753
No 58
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.40 E-value=4.3e-13 Score=140.19 Aligned_cols=119 Identities=31% Similarity=0.654 Sum_probs=91.3
Q ss_pred eeeecccccCcccccCc---------ceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeee-------
Q 010831 221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRK------- 284 (499)
Q Consensus 221 ~~~~C~~C~GsG~~~g~---------~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~------- 284 (499)
....|+.|+|+|..... ...+|+.|+|+|++++ ..|+.|+|.|.+....-.+
T Consensus 164 ~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~ 231 (365)
T PRK14290 164 KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPE------------EKCPRCNGTGTVVVNEDISVKIPKGA 231 (365)
T ss_pred CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEcc------------CCCCCCCCceeEEEeeEEEEEECCCC
Confidence 35689999999964221 2468999999998743 6899999999865431111
Q ss_pred -------ccCce--------EE---------------------------------------EeeeeEEEEeCCCCCCCCE
Q 010831 285 -------CSGEG--------RI---------------------------------------RLKKNIKVKVPPGVSTGSI 310 (499)
Q Consensus 285 -------C~G~G--------~v---------------------------------------~~~k~l~V~IP~Gv~~G~~ 310 (499)
-.|+| .+ ...++++|+||+|+++|++
T Consensus 232 ~~G~~i~~~g~G~~~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~i~V~Ip~g~~~g~~ 311 (365)
T PRK14290 232 TDNLRLRVKGKGQSYGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREKYNLKIPEGTQPGEV 311 (365)
T ss_pred CCCcEEEEccccCCCCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCceEEEEECCccCCCcE
Confidence 12221 11 1235689999999999999
Q ss_pred EEEcccCCCCCCCCCCccEEEEEEEEeccccccCCcceEEE
Q 010831 311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST 351 (499)
Q Consensus 311 Irl~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL~~~ 351 (499)
|+|+|+|++.+.+..+|||||+|+|..|+.|++++.+|+.+
T Consensus 312 iri~g~G~p~~~~~~~GDL~V~~~V~~P~~l~~~~~~ll~~ 352 (365)
T PRK14290 312 LKIKGAGMPHLNGHGSGDLLVRINVEVPKRLTSKQKELIRE 352 (365)
T ss_pred EEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 99999999876666789999999999999999999988765
No 59
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.40 E-value=3.5e-13 Score=126.28 Aligned_cols=64 Identities=31% Similarity=0.542 Sum_probs=56.7
Q ss_pred cCcchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHhhcchhhhhhhccc
Q 010831 77 GDYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKEPG------ATEKFKEISAAYEVLSDDKKRAMYDQ 140 (499)
Q Consensus 77 ~d~Y~vLgv~~~--as~~eIk~ayrkla~~~HPD~~~~~~------~~~~f~~i~~AY~vLsd~~kR~~YD~ 140 (499)
.|||++|||++. ++..+|+++||+|+++||||+..... +.+.|..||+||++|+||.+|+.|+.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll 72 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLL 72 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence 389999999995 78899999999999999999975421 45689999999999999999999984
No 60
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.37 E-value=1e-12 Score=137.38 Aligned_cols=118 Identities=31% Similarity=0.604 Sum_probs=89.1
Q ss_pred eeecccccCcccccC-----cceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeee-------------
Q 010831 222 LETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCR------------- 283 (499)
Q Consensus 222 ~~~C~~C~GsG~~~g-----~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~------------- 283 (499)
...|+.|+|+|.... ....+|+.|+|+|+++. ..|..|.|.|.+....-.
T Consensus 161 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~ 228 (366)
T PRK14294 161 PTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIV------------SPCKTCHGQGRVRVSKTVQVKIPAGVDTGSR 228 (366)
T ss_pred cccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecC------------cCCCCCCCceEeecceeEEEecCCCCcCCcE
Confidence 467999999996431 13578999999998753 679999999986543111
Q ss_pred -eccCce----------EE---------------------------------------EeeeeEEEEeCCCCCCCCEEEE
Q 010831 284 -KCSGEG----------RI---------------------------------------RLKKNIKVKVPPGVSTGSILRV 313 (499)
Q Consensus 284 -~C~G~G----------~v---------------------------------------~~~k~l~V~IP~Gv~~G~~Irl 313 (499)
...|.| .+ .....++|.||+|+++|++|+|
T Consensus 229 i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~iri 308 (366)
T PRK14294 229 LRLRGEGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGERELKIPKGTQPGDIFRF 308 (366)
T ss_pred EEEccCccCCCCCCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEECCCCcEEEEECCCcCCCCEEEE
Confidence 112221 11 1224579999999999999999
Q ss_pred cccCCCCCCCCCCccEEEEEEEEeccccccCCcceEEE
Q 010831 314 VGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST 351 (499)
Q Consensus 314 ~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL~~~ 351 (499)
+|+|++.+.++.+|||||+|+|..|+.|++++.+|+..
T Consensus 309 ~G~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~ 346 (366)
T PRK14294 309 KGKGIPSLRGGGRGDQIIEVEVKVPTRLTKKQEELLTE 346 (366)
T ss_pred CCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 99999876656789999999999999999998887754
No 61
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.36 E-value=1.4e-12 Score=136.79 Aligned_cols=119 Identities=34% Similarity=0.618 Sum_probs=89.0
Q ss_pred eeecccccCcccccC---------cceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeec-------
Q 010831 222 LETCEVCTGTGAKMG---------SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------- 285 (499)
Q Consensus 222 ~~~C~~C~GsG~~~g---------~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C------- 285 (499)
...|+.|+|+|.... ....+|+.|+|+|.++. ..|+.|.|.|.+....-.+.
T Consensus 158 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~IppG~~ 225 (377)
T PRK14298 158 PKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIE------------SPCPVCSGTGKVRKTRKITVNVPAGAD 225 (377)
T ss_pred CCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccC------------CCCCCCCCccEEEEEEEEEecCCCCCC
Confidence 357999999996432 12578999999998653 57999999998654311111
Q ss_pred -------cCc----------eEE---------------------------------------EeeeeEEEEeCCCCCCCC
Q 010831 286 -------SGE----------GRI---------------------------------------RLKKNIKVKVPPGVSTGS 309 (499)
Q Consensus 286 -------~G~----------G~v---------------------------------------~~~k~l~V~IP~Gv~~G~ 309 (499)
.|+ |.+ .....++|+||+|+++|+
T Consensus 226 ~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g~ 305 (377)
T PRK14298 226 SGLRLKLSGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLYGKVKMNIPPGTQTHS 305 (377)
T ss_pred CCCEEEEecccCCCCCCCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEecCCCCEEEEeCCCcccCC
Confidence 111 111 123348999999999999
Q ss_pred EEEEcccCCCCCCCCCCccEEEEEEEEeccccccCCcceEEEe
Q 010831 310 ILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTI 352 (499)
Q Consensus 310 ~Irl~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL~~~~ 352 (499)
+++|+|+|.+...++..|||||+|+|..|+.|++++.+|+.++
T Consensus 306 ~lri~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~~~~ll~~l 348 (377)
T PRK14298 306 VFRLKDKGMPRLHGHGKGDQLVKVIVKTPTKLTQEQKELLREF 348 (377)
T ss_pred EEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 9999999998665566899999999999999999998877543
No 62
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.34 E-value=3.3e-12 Score=134.56 Aligned_cols=114 Identities=31% Similarity=0.585 Sum_probs=83.0
Q ss_pred eeecccccCcccccC-----cceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeee------------
Q 010831 222 LETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRK------------ 284 (499)
Q Consensus 222 ~~~C~~C~GsG~~~g-----~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~------------ 284 (499)
...|+.|+|+|.... ....+|+.|+|+|.++. .+|..|.|.|.+....-.+
T Consensus 183 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~ 250 (389)
T PRK14295 183 PRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIAD------------DPCLVCKGSGRAKSSRTMQVRIPAGVSDGQR 250 (389)
T ss_pred CcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEec------------cCCCCCCCCceEeeeeEEEEEeCCCCCCCCE
Confidence 467999999996421 23568999999998754 6799999999765421111
Q ss_pred --ccCc----------eEE----------------------------------------EeeeeEEEEeCCCCCCCCEEE
Q 010831 285 --CSGE----------GRI----------------------------------------RLKKNIKVKVPPGVSTGSILR 312 (499)
Q Consensus 285 --C~G~----------G~v----------------------------------------~~~k~l~V~IP~Gv~~G~~Ir 312 (499)
-.|+ |.+ ...++++|+||+|+++|++|+
T Consensus 251 i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tldG~~~~v~ip~g~~~g~~ir 330 (389)
T PRK14295 251 IRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPPVTVKLPPGTPNGRVLR 330 (389)
T ss_pred EEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEECCCCCEEEEEECCccCCCcEEE
Confidence 1111 111 123479999999999999999
Q ss_pred EcccCCCCCCCCCCccEEEEEEEEeccccccCCcce
Q 010831 313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDL 348 (499)
Q Consensus 313 l~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL 348 (499)
|+|+|.+.. ++..|||||+|+|..+..+..+...|
T Consensus 331 i~G~G~p~~-~~~~GDL~i~~~v~~P~~Ls~~qk~~ 365 (389)
T PRK14295 331 VRGKGAVRK-DGTRGDLLVTVEVAVPKDLSGKAREA 365 (389)
T ss_pred ECCCCcCCC-CCCCCCEEEEEEEECCCCCCHHHHHH
Confidence 999999864 45689999999999887665444443
No 63
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.34 E-value=1.6e-12 Score=135.96 Aligned_cols=117 Identities=24% Similarity=0.531 Sum_probs=88.2
Q ss_pred eeecccccCcccccC-----cceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeec-----------
Q 010831 222 LETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC----------- 285 (499)
Q Consensus 222 ~~~C~~C~GsG~~~g-----~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C----------- 285 (499)
...|+.|+|+|.... ....+|+.|+|+|.++. .+|..|+|.|.+....-.++
T Consensus 163 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~ 230 (365)
T PRK14285 163 PSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIIS------------NPCKSCKGKGSLKKKETIELKIPAGIDDNQQ 230 (365)
T ss_pred CccCCCccCceeEEecCceeEEeeecCCCCCcccccC------------CCCCCCCCCCEEeccEEEEEEECCCCCCCCE
Confidence 467999999996421 23678999999998753 67999999997654311111
Q ss_pred ---cCc----------eEE----------------------------------------EeeeeEEEEeCCCCCCCCEEE
Q 010831 286 ---SGE----------GRI----------------------------------------RLKKNIKVKVPPGVSTGSILR 312 (499)
Q Consensus 286 ---~G~----------G~v----------------------------------------~~~k~l~V~IP~Gv~~G~~Ir 312 (499)
.|+ |.+ ...++|+|+||+|+++|++|+
T Consensus 231 i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~v~V~Ip~g~~~g~~ir 310 (365)
T PRK14285 231 IKMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIKIPKGTENDEQII 310 (365)
T ss_pred EEEeeccccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCEEEEEeCCCcCCCcEEE
Confidence 111 211 123579999999999999999
Q ss_pred EcccCCCCCCCCCCccEEEEEEEEeccccccCCcceEE
Q 010831 313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFS 350 (499)
Q Consensus 313 l~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL~~ 350 (499)
|+|+|++.+.+...|||||+|+|+.|+.|++++..|+.
T Consensus 311 l~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l~ 348 (365)
T PRK14285 311 IKNEGMPILHTEKFGNLILIIKIKTPKNLNSNAIKLLE 348 (365)
T ss_pred ECCCCccCCCCCCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence 99999987655557999999999999999988876654
No 64
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.33 E-value=1.9e-12 Score=121.30 Aligned_cols=65 Identities=28% Similarity=0.405 Sum_probs=57.9
Q ss_pred CcCcchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHhhcchhhhhhhccc
Q 010831 76 SGDYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKEPG------ATEKFKEISAAYEVLSDDKKRAMYDQ 140 (499)
Q Consensus 76 ~~d~Y~vLgv~~~--as~~eIk~ayrkla~~~HPD~~~~~~------~~~~f~~i~~AY~vLsd~~kR~~YD~ 140 (499)
..|||++|||++. .+..+|+++||+|+++||||++.... +.+.|..||+||++|+||.+|+.|+.
T Consensus 3 ~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL 75 (173)
T PRK00294 3 TPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL 75 (173)
T ss_pred CCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 5689999999996 67899999999999999999986422 45689999999999999999999995
No 65
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.32 E-value=1.9e-12 Score=121.73 Aligned_cols=65 Identities=31% Similarity=0.434 Sum_probs=56.3
Q ss_pred CcCcchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCC-cch-----HHHHHHHHHHHhhcchhhhhhhccc
Q 010831 76 SGDYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKE-PGA-----TEKFKEISAAYEVLSDDKKRAMYDQ 140 (499)
Q Consensus 76 ~~d~Y~vLgv~~~--as~~eIk~ayrkla~~~HPD~~~~-~~~-----~~~f~~i~~AY~vLsd~~kR~~YD~ 140 (499)
..|||++|||++. ++..+|+++||+|++++|||++.. +.. .+.+..||+||++|+||.+|+.|+.
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll 77 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL 77 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence 3699999999995 689999999999999999999863 222 3446899999999999999999985
No 66
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.31 E-value=4.6e-12 Score=133.61 Aligned_cols=117 Identities=29% Similarity=0.667 Sum_probs=87.3
Q ss_pred eeecccccCcccccC-----cceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeee------------
Q 010831 222 LETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRK------------ 284 (499)
Q Consensus 222 ~~~C~~C~GsG~~~g-----~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~------------ 284 (499)
...|+.|+|+|.... ....+|+.|+|+|+++. .+|+.|.|.|.+....-.+
T Consensus 175 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~ 242 (391)
T PRK14284 175 IKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVIT------------DPCSVCRGQGRIKDKRSVHVHIPAGVDSGMR 242 (391)
T ss_pred CeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccC------------CcCCCCCCcceecceEEEEEEECCCCCCCCE
Confidence 467999999996421 13569999999998754 6799999999764321111
Q ss_pred --ccCce----------EE---------------------------------------Eee--eeEEEEeCCCCCCCCEE
Q 010831 285 --CSGEG----------RI---------------------------------------RLK--KNIKVKVPPGVSTGSIL 311 (499)
Q Consensus 285 --C~G~G----------~v---------------------------------------~~~--k~l~V~IP~Gv~~G~~I 311 (499)
-.|+| .+ ... +.++|+||+|+++|+++
T Consensus 243 i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld~g~~i~v~Ip~g~~~g~~~ 322 (391)
T PRK14284 243 LKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGTCRLTIPEGIQSGTIL 322 (391)
T ss_pred EEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEeecCCCcEEEEEECCccCCCeEE
Confidence 12211 11 122 67899999999999999
Q ss_pred EEcccCCCCCCCCCCccEEEEEEEEeccccccCCcceEE
Q 010831 312 RVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFS 350 (499)
Q Consensus 312 rl~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL~~ 350 (499)
+|+|+|.+...++.+|||||+|+|..++.++.+..+|+.
T Consensus 323 ~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~ 361 (391)
T PRK14284 323 KVRGQGFPNVHGKGRGDLLVRISVETPQNLSEEQKELLR 361 (391)
T ss_pred EECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHH
Confidence 999999987655678999999999999888877766553
No 67
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.2e-12 Score=135.53 Aligned_cols=66 Identities=42% Similarity=0.638 Sum_probs=64.1
Q ss_pred CcCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhcccc
Q 010831 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQY 141 (499)
Q Consensus 76 ~~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~~~~~~~f~~i~~AY~vLsd~~kR~~YD~~ 141 (499)
..|.|.+|||+.++++++|||.|||+|...|||+|..+.|+|.|+.++.|||+|+|+++|..||.-
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e 299 (490)
T KOG0720|consen 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLE 299 (490)
T ss_pred CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence 679999999999999999999999999999999999999999999999999999999999999974
No 68
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.31 E-value=3.3e-12 Score=133.90 Aligned_cols=115 Identities=26% Similarity=0.560 Sum_probs=85.2
Q ss_pred eeecccccCcccccC-----cceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeec-----------
Q 010831 222 LETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC----------- 285 (499)
Q Consensus 222 ~~~C~~C~GsG~~~g-----~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C----------- 285 (499)
...|+.|+|+|.... ....+|+.|+|+|.++. .+|+.|+|.|.+....-.+.
T Consensus 162 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~ 229 (372)
T PRK14300 162 VTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIK------------NPCKKCHGMGRYHKQRNLSVNIPAGVENGTR 229 (372)
T ss_pred CccCCCccCeEEEEEeeceEEEEEeCCCCCccceEeC------------CCCCCCCCceEEEeeEEEEEEECCCCCCCcE
Confidence 467999999997531 13568999999998754 67999999998743211111
Q ss_pred ---cCc----------eEE---------------------------------------E-eeeeEEEEeCCCCCCCCEEE
Q 010831 286 ---SGE----------GRI---------------------------------------R-LKKNIKVKVPPGVSTGSILR 312 (499)
Q Consensus 286 ---~G~----------G~v---------------------------------------~-~~k~l~V~IP~Gv~~G~~Ir 312 (499)
.|. |.+ . ..+.|+|+||+|+++|++|+
T Consensus 230 i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~i~v~Ip~g~~~g~~ir 309 (372)
T PRK14300 230 IRHTGEGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIPAGTQNGDQLR 309 (372)
T ss_pred EEEeccccCCCCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCCCEEEEEECCccCCCcEEE
Confidence 111 111 1 13579999999999999999
Q ss_pred EcccCCCCCCCCCCccEEEEEEEEeccccccCCcce
Q 010831 313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDL 348 (499)
Q Consensus 313 l~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL 348 (499)
|+|+|++.+++..+|||||+|+|+.|..|+-+...|
T Consensus 310 i~g~G~p~~~~~~~GDL~V~~~v~~P~~ls~~qk~~ 345 (372)
T PRK14300 310 LRSKGMSKMRSTIRGDMLTHIHVEVPKNLSKRQREL 345 (372)
T ss_pred ECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHH
Confidence 999999876666789999999999998776554443
No 69
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.31 E-value=4.4e-12 Score=132.85 Aligned_cols=117 Identities=31% Similarity=0.636 Sum_probs=87.0
Q ss_pred eeecccccCcccccC---------cceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeec-------
Q 010831 222 LETCEVCTGTGAKMG---------SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------- 285 (499)
Q Consensus 222 ~~~C~~C~GsG~~~g---------~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C------- 285 (499)
...|+.|+|+|.... ....+|+.|+|+|.++. ..|..|+|.|.+......+.
T Consensus 155 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~ 222 (371)
T PRK14287 155 PETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIK------------QKCATCGGKGKVRKRKKINVKVPAGID 222 (371)
T ss_pred CcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCcccc------------ccCCCCCCeeEEeeeEEEEEEECCcCC
Confidence 467999999996432 12568999999998754 67999999987643322211
Q ss_pred -------cCc----------eEE---------------------------------------EeeeeEEEEeCCCCCCCC
Q 010831 286 -------SGE----------GRI---------------------------------------RLKKNIKVKVPPGVSTGS 309 (499)
Q Consensus 286 -------~G~----------G~v---------------------------------------~~~k~l~V~IP~Gv~~G~ 309 (499)
.|+ |.+ .....++|+||+|+++|+
T Consensus 223 ~G~~i~~~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g~ 302 (371)
T PRK14287 223 HGQQLRVSGQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGKVKLKIPAGTQTGT 302 (371)
T ss_pred CCCEEEEccCCcCCCCCCCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEEcCCCCEEEEECCCccCCc
Confidence 221 111 123458999999999999
Q ss_pred EEEEcccCCCCCCCCCCccEEEEEEEEeccccccCCcceEE
Q 010831 310 ILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFS 350 (499)
Q Consensus 310 ~Irl~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL~~ 350 (499)
+++|+|+|.+...++..|||||+|+|..|+.++++...|+.
T Consensus 303 ~~ri~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~ 343 (371)
T PRK14287 303 SFRLRGKGVPNVHGRGQGDQHVQVRVVTPKNLTEKEKELMR 343 (371)
T ss_pred EEEEcCCCccCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHH
Confidence 99999999987665668999999999999988877766553
No 70
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.31 E-value=4.3e-12 Score=133.01 Aligned_cols=117 Identities=29% Similarity=0.564 Sum_probs=86.5
Q ss_pred eeecccccCcccccC-----cceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeee------------
Q 010831 222 LETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRK------------ 284 (499)
Q Consensus 222 ~~~C~~C~GsG~~~g-----~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~------------ 284 (499)
...|+.|+|+|.... ....+|+.|+|+|+++. ..|+.|+|.|.+....-.+
T Consensus 161 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~ 228 (373)
T PRK14301 161 PETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVIT------------HPCPKCKGSGIVQQTRELKVRIPAGVDTGSR 228 (373)
T ss_pred CcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecC------------CCCCCCCCCceeccceEEEEEeCCCCcCCCE
Confidence 467999999996421 23678999999998754 6799999999864321111
Q ss_pred --ccCc----------eEE---------------------------------------EeeeeEEEEeCCCCCCCCEEEE
Q 010831 285 --CSGE----------GRI---------------------------------------RLKKNIKVKVPPGVSTGSILRV 313 (499)
Q Consensus 285 --C~G~----------G~v---------------------------------------~~~k~l~V~IP~Gv~~G~~Irl 313 (499)
-.|+ |.+ .....++|+||+|+++|++++|
T Consensus 229 i~~~g~G~~~~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~tldG~i~v~ip~g~~~g~~~ri 308 (373)
T PRK14301 229 LRLRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDPVTLDIPKGTQSGEVFRL 308 (373)
T ss_pred EEEeccccCCCCCCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEecCCccEEEEECCCcCCCcEEEE
Confidence 1111 211 1234489999999999999999
Q ss_pred cccCCCCCCCCCCccEEEEEEEEeccccccCCcceEE
Q 010831 314 VGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFS 350 (499)
Q Consensus 314 ~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL~~ 350 (499)
+|+|.+...++..|||||+|+|..|+.++.+..+|+.
T Consensus 309 ~g~G~p~~~~~~~GDL~I~~~V~~P~~l~~~q~~~l~ 345 (373)
T PRK14301 309 RGKGLPYLGSSQKGDLLVEVSVVTPTKLTKRQEELLR 345 (373)
T ss_pred cCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence 9999987666678999999999999888766655543
No 71
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.30 E-value=7.2e-12 Score=131.54 Aligned_cols=115 Identities=29% Similarity=0.601 Sum_probs=84.2
Q ss_pred eeecccccCcccccCc---------ceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeee--------
Q 010831 222 LETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRK-------- 284 (499)
Q Consensus 222 ~~~C~~C~GsG~~~g~---------~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~-------- 284 (499)
...|+.|+|+|..... ...+|+.|+|+|.++. .+|+.|.|.|.+....-.+
T Consensus 156 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~~ 223 (378)
T PRK14278 156 PVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIP------------DPCHECAGDGRVRARREITVKIPAGVG 223 (378)
T ss_pred ceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeC------------CCCCCCCCceeEecceEEEEEECCCCC
Confidence 4679999999964221 2568999999998754 5799999999865431111
Q ss_pred ------ccCc----------eEE---------------------------------------Ee-eeeEEEEeCCCCCCC
Q 010831 285 ------CSGE----------GRI---------------------------------------RL-KKNIKVKVPPGVSTG 308 (499)
Q Consensus 285 ------C~G~----------G~v---------------------------------------~~-~k~l~V~IP~Gv~~G 308 (499)
-.|+ |.+ .. .+.++|.||+|+++|
T Consensus 224 ~G~~i~~~g~G~~~~~~~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld~~~i~v~ip~g~~~g 303 (378)
T PRK14278 224 DGMRIRLAAQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSEITIPPGTQPG 303 (378)
T ss_pred CCcEEEEccCcCCCCCCCCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEecCCCCeEEEEeCCCcCCC
Confidence 1111 111 12 567899999999999
Q ss_pred CEEEEcccCCCCCCCCCCccEEEEEEEEeccccccCCcce
Q 010831 309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDL 348 (499)
Q Consensus 309 ~~Irl~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL 348 (499)
++++|+|+|.+...++..|||||+|+|..+..+..+...|
T Consensus 304 ~~lrl~g~G~p~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~ 343 (378)
T PRK14278 304 SVITLRGRGMPHLRSGGRGDLHAHVEVVVPTRLDHEDIEL 343 (378)
T ss_pred cEEEECCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHHHH
Confidence 9999999999876556789999999999887665444433
No 72
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.28 E-value=3.7e-12 Score=110.93 Aligned_cols=51 Identities=27% Similarity=0.429 Sum_probs=47.7
Q ss_pred cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcc
Q 010831 77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLS 130 (499)
Q Consensus 77 ~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~~~~~~~f~~i~~AY~vLs 130 (499)
.++|+||||+++|+.+|||++||+|++++|||++ ++.+.|++|++|||+|.
T Consensus 65 ~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg---Gs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 65 SEAYKILNISPTASKERIREAHKQLMLRNHPDNG---GSTYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHHh
Confidence 6899999999999999999999999999999985 45689999999999995
No 73
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.27 E-value=1.1e-11 Score=129.98 Aligned_cols=116 Identities=33% Similarity=0.557 Sum_probs=84.8
Q ss_pred eeecccccCcccccC-----cceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceee--------------
Q 010831 222 LETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYC-------------- 282 (499)
Q Consensus 222 ~~~C~~C~GsG~~~g-----~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C-------------- 282 (499)
...|+.|+|+|.... ....+|+.|+|+|+++. .+|..|+|.|.+....-
T Consensus 167 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~ 234 (372)
T PRK14286 167 PTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVIS------------NPCKTCGGQGLQEKRRTINIKIPPGVETGSR 234 (372)
T ss_pred CccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEec------------ccCCCCCCCcEEecceEEEEEECCCCCCCCE
Confidence 367999999996421 23568999999998754 57999999998654211
Q ss_pred eeccCc----------eEE----------------------------------------EeeeeEEEEeCCCCCCCCEEE
Q 010831 283 RKCSGE----------GRI----------------------------------------RLKKNIKVKVPPGVSTGSILR 312 (499)
Q Consensus 283 ~~C~G~----------G~v----------------------------------------~~~k~l~V~IP~Gv~~G~~Ir 312 (499)
....|+ |.+ ...+.++|+||+|+++|++++
T Consensus 235 i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~i~v~ip~g~~~g~~~r 314 (372)
T PRK14286 235 LKVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPEGTESGQVFR 314 (372)
T ss_pred EEECCccccCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCEEEEEeCCccCCCcEEE
Confidence 111111 221 113468999999999999999
Q ss_pred EcccCCCCCCCCCCccEEEEEEEEeccccccCCcceE
Q 010831 313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLF 349 (499)
Q Consensus 313 l~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL~ 349 (499)
|+|+|.+...++..|||||+|+|..++.++.+..+|+
T Consensus 315 i~G~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l 351 (372)
T PRK14286 315 LKGHGMPYLGAYGKGDQHVIVKIEIPKKITRRQRELI 351 (372)
T ss_pred ECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHH
Confidence 9999998765556899999999999987766555443
No 74
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.26 E-value=6.5e-12 Score=130.91 Aligned_cols=116 Identities=33% Similarity=0.736 Sum_probs=85.5
Q ss_pred eeecccccCcccccC---------cceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeee---------
Q 010831 222 LETCEVCTGTGAKMG---------SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCR--------- 283 (499)
Q Consensus 222 ~~~C~~C~GsG~~~g---------~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~--------- 283 (499)
...|+.|+|+|.... ....+|+.|+|+|++++ ..|+.|.|.|.+....-.
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~ 227 (354)
T TIGR02349 160 PKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIK------------EPCSTCKGKGRVKERKTITVKIPAGVD 227 (354)
T ss_pred CccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecC------------CCCCCCCCCcEecccceEEEEECCCCC
Confidence 467999999995321 12468999999998754 579999999976432111
Q ss_pred -----eccCc----------eEE---------------------------------------EeeeeEEEEeCCCCCCCC
Q 010831 284 -----KCSGE----------GRI---------------------------------------RLKKNIKVKVPPGVSTGS 309 (499)
Q Consensus 284 -----~C~G~----------G~v---------------------------------------~~~k~l~V~IP~Gv~~G~ 309 (499)
.-.|+ |.+ ....+++|.||+|+++|+
T Consensus 228 ~G~~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~ldG~i~v~ip~g~~~g~ 307 (354)
T TIGR02349 228 TGQRLRVSGKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDGDVKLKIPAGTQSGT 307 (354)
T ss_pred CCCEEEEecCccCCCCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEecCCceEEEEECCcccCCc
Confidence 11111 111 112368999999999999
Q ss_pred EEEEcccCCCCCCCCCCccEEEEEEEEeccccccCCcceE
Q 010831 310 ILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLF 349 (499)
Q Consensus 310 ~Irl~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL~ 349 (499)
+++|+|+|++...+..+|||||+|+|..++.|++++.+++
T Consensus 308 ~~~i~g~G~p~~~~~~~GDL~i~~~v~~P~~l~~~~~~~l 347 (354)
T TIGR02349 308 VFRLKGKGVPRLRGNGRGDLLVTVKVETPKNLSKEQKELL 347 (354)
T ss_pred EEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence 9999999998766667899999999999998887776554
No 75
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.26 E-value=1e-11 Score=130.01 Aligned_cols=116 Identities=23% Similarity=0.508 Sum_probs=85.2
Q ss_pred eeeecccccCcccccC-----cceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeec----------
Q 010831 221 HLETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC---------- 285 (499)
Q Consensus 221 ~~~~C~~C~GsG~~~g-----~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C---------- 285 (499)
....|+.|+|+|.... ....+|+.|+|+|.++. ..|..|+|.|.+....-.+.
T Consensus 155 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~ 222 (369)
T PRK14288 155 ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIK------------TPCQACKGKTYILKDEEIDAIIPEGIDDQN 222 (369)
T ss_pred CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEcc------------ccCccCCCcceEEEEEEEEEecCCCCCCCC
Confidence 4578999999996421 23568999999998754 67999999998654321111
Q ss_pred ----cCc---------eEE----------------------------------------EeeeeEEEEeCCCCCCCCEEE
Q 010831 286 ----SGE---------GRI----------------------------------------RLKKNIKVKVPPGVSTGSILR 312 (499)
Q Consensus 286 ----~G~---------G~v----------------------------------------~~~k~l~V~IP~Gv~~G~~Ir 312 (499)
.|+ |.+ ...+.++|+||+|+++|++++
T Consensus 223 ~i~l~g~G~~~~~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~i~i~~~~~~g~~~~ 302 (369)
T PRK14288 223 RMVLKNKGNEYEKGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRNARDRQTFA 302 (369)
T ss_pred EEEEccCccCCCCCCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEEEEeCCCCCCCcEEE
Confidence 111 111 123468999999999999999
Q ss_pred EcccCCCCCCCCCCccEEEEEEEEeccccccCCcce
Q 010831 313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDL 348 (499)
Q Consensus 313 l~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL 348 (499)
|+|+|.+.+.+...|||||+|+|+.|+.|+.+...+
T Consensus 303 i~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~~~ 338 (369)
T PRK14288 303 FRNEGVKHPESSYRGSLIVELQVIYPKSLNKEQQEL 338 (369)
T ss_pred EcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHH
Confidence 999999866544569999999999998877665443
No 76
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.25 E-value=9.2e-12 Score=131.57 Aligned_cols=115 Identities=33% Similarity=0.673 Sum_probs=84.1
Q ss_pred eeeecccccCcccccCc---------ceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeee-------
Q 010831 221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRK------- 284 (499)
Q Consensus 221 ~~~~C~~C~GsG~~~g~---------~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~------- 284 (499)
....|+.|+|+|..... ...+|+.|+|+|+++. ..|+.|.|.|.+....-.+
T Consensus 178 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~ 245 (397)
T PRK14281 178 ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVK------------DRCPACYGEGIKQGEVTVKVTVPAGV 245 (397)
T ss_pred CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeC------------CCCCCCCCCccEecceEEEEecCCCC
Confidence 35689999999964221 2568999999998754 6799999999875431111
Q ss_pred -------ccCc----------eEE---------------------------------------EeeeeEEEEeCCCCCCC
Q 010831 285 -------CSGE----------GRI---------------------------------------RLKKNIKVKVPPGVSTG 308 (499)
Q Consensus 285 -------C~G~----------G~v---------------------------------------~~~k~l~V~IP~Gv~~G 308 (499)
..|+ |.+ ..+..++|+||+|+++|
T Consensus 246 ~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~g~~~G 325 (397)
T PRK14281 246 QDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDGAVKLTIPAGTQPE 325 (397)
T ss_pred CCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEeecCCccEEEEeCCccCCC
Confidence 1221 111 12345899999999999
Q ss_pred CEEEEcccCCCCCCCCCCccEEEEEEEEeccccccCCcc
Q 010831 309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGID 347 (499)
Q Consensus 309 ~~Irl~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~D 347 (499)
++++|+|+|.+...++..|||||+|+|..+..++.+...
T Consensus 326 ~~~ri~g~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~ 364 (397)
T PRK14281 326 TMLRIPGKGIGHLRGSGRGDQYVRVNVFVPKEVSHQDKE 364 (397)
T ss_pred cEEEEcCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHHH
Confidence 999999999987655678999999999988766544443
No 77
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.25 E-value=8e-12 Score=131.34 Aligned_cols=115 Identities=25% Similarity=0.558 Sum_probs=82.7
Q ss_pred eeecccccCcccccC---------cceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeec-------
Q 010831 222 LETCEVCTGTGAKMG---------SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------- 285 (499)
Q Consensus 222 ~~~C~~C~GsG~~~g---------~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C------- 285 (499)
...|+.|+|+|.... ....+|+.|+|+|.++. .+|+.|.|.|.+....-.+.
T Consensus 163 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~~~~~~~l~V~Ip~G~~ 230 (380)
T PRK14276 163 PVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIK------------EPCQTCHGTGHEKQAHTVSVKIPAGVE 230 (380)
T ss_pred CccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCcccc------------CCCCCCCCceEEEEEEEEEEEeCCCcc
Confidence 457999999986421 12568999999998754 57999999987643311111
Q ss_pred -------cCc----------eEE---------------------------------------EeeeeEEEEeCCCCCCCC
Q 010831 286 -------SGE----------GRI---------------------------------------RLKKNIKVKVPPGVSTGS 309 (499)
Q Consensus 286 -------~G~----------G~v---------------------------------------~~~k~l~V~IP~Gv~~G~ 309 (499)
.|+ |.+ .....++|+||+|+++|+
T Consensus 231 ~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tldg~i~v~ip~g~~~g~ 310 (380)
T PRK14276 231 TGQQIRLQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVHGDVELKIPAGTQTGK 310 (380)
T ss_pred CCcEEEEeccccCCCCCCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEEcCCCcEEEEECCCCCCCC
Confidence 111 211 123458999999999999
Q ss_pred EEEEcccCCCCCCCCCCccEEEEEEEEeccccccCCcce
Q 010831 310 ILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDL 348 (499)
Q Consensus 310 ~Irl~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL 348 (499)
+++|+|+|.+...++.+|||||+|+|..+..+..+...+
T Consensus 311 ~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~ 349 (380)
T PRK14276 311 KFRLRGKGAPKLRGGGNGDQHVTVNIVTPTKLNDAQKEA 349 (380)
T ss_pred EEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHH
Confidence 999999999876556789999999999887766554443
No 78
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.25 E-value=1.5e-11 Score=129.62 Aligned_cols=114 Identities=30% Similarity=0.608 Sum_probs=83.0
Q ss_pred eeeecccccCcccccC-----cceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeee-----------
Q 010831 221 HLETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRK----------- 284 (499)
Q Consensus 221 ~~~~C~~C~GsG~~~g-----~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~----------- 284 (499)
....|+.|+|+|.... ....+|+.|+|+|+++. ..|..|.|.|.+....-.+
T Consensus 189 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~ 256 (392)
T PRK14279 189 SPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIE------------DPCEECKGTGVTTRTRTINVRIPPGVEDGQ 256 (392)
T ss_pred CCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeC------------CcCCCCCCCeEEEEeeeeEEEeCCCCCCCc
Confidence 3468999999996522 13579999999998754 6799999999875431111
Q ss_pred ---ccCc----------eEE---------------------------------------EeeeeEEEEeCCCCCCCCEEE
Q 010831 285 ---CSGE----------GRI---------------------------------------RLKKNIKVKVPPGVSTGSILR 312 (499)
Q Consensus 285 ---C~G~----------G~v---------------------------------------~~~k~l~V~IP~Gv~~G~~Ir 312 (499)
-.|+ |.+ .....++|+||+|+++|++|+
T Consensus 257 ~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~i~v~Ip~g~~~g~~ir 336 (392)
T PRK14279 257 RIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGPVGVKVPAGTADGRILR 336 (392)
T ss_pred EEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCceEEEEECCCCCCCCEEE
Confidence 1111 211 123458999999999999999
Q ss_pred EcccCCCCCCCCCCccEEEEEEEEeccccccCCcc
Q 010831 313 VVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGID 347 (499)
Q Consensus 313 l~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~D 347 (499)
|+|+|++.. ++..|||||+|+|..++.+..+...
T Consensus 337 i~g~G~p~~-~~~~GDL~I~~~v~~P~~Ls~~q~~ 370 (392)
T PRK14279 337 VRGRGVPKR-SGGAGDLLVTVKVAVPPNLDGAAAE 370 (392)
T ss_pred ECCCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHH
Confidence 999999863 4568999999999988766544443
No 79
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.24 E-value=2e-11 Score=128.16 Aligned_cols=115 Identities=34% Similarity=0.651 Sum_probs=82.3
Q ss_pred eeecccccCcccccC---------cceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeec-------
Q 010831 222 LETCEVCTGTGAKMG---------SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------- 285 (499)
Q Consensus 222 ~~~C~~C~GsG~~~g---------~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C------- 285 (499)
...|+.|+|+|.... ....+|+.|+|+|.++. .+|+.|+|.|.+....-...
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~i~V~Ip~G~~ 227 (376)
T PRK14280 160 KETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIK------------EKCPTCHGKGKVRKRKKINVKIPAGVD 227 (376)
T ss_pred CccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceec------------CCCCCCCCceEEEEEEEEEEEeCCCCc
Confidence 467999999996421 13568999999998753 67999999997643211111
Q ss_pred -------cCc----------eEE---------------------------------------EeeeeEEEEeCCCCCCCC
Q 010831 286 -------SGE----------GRI---------------------------------------RLKKNIKVKVPPGVSTGS 309 (499)
Q Consensus 286 -------~G~----------G~v---------------------------------------~~~k~l~V~IP~Gv~~G~ 309 (499)
.|+ |.+ .....++|+||+|+++|+
T Consensus 228 ~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~g~~~g~ 307 (376)
T PRK14280 228 NGQQIRVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLHGKVKLKIPAGTQTGT 307 (376)
T ss_pred CCcEEEEcccccCCCCCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCceEEEEECCCCCCCc
Confidence 111 111 123458999999999999
Q ss_pred EEEEcccCCCCCCCCCCccEEEEEEEEeccccccCCcce
Q 010831 310 ILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDL 348 (499)
Q Consensus 310 ~Irl~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL 348 (499)
+++|+|+|.+...+...|||||+|+|..+..++.+...|
T Consensus 308 ~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~Ls~~q~~~ 346 (376)
T PRK14280 308 QFRLKGKGVPNVRGYGQGDQYVVVRVVTPTKLTDRQKEL 346 (376)
T ss_pred EEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHH
Confidence 999999999866555689999999999887665444433
No 80
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.23 E-value=1.4e-11 Score=129.30 Aligned_cols=118 Identities=26% Similarity=0.548 Sum_probs=87.4
Q ss_pred eeecccccCccccc-------C--cceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeee--------
Q 010831 222 LETCEVCTGTGAKM-------G--SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRK-------- 284 (499)
Q Consensus 222 ~~~C~~C~GsG~~~-------g--~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~-------- 284 (499)
...|+.|+|+|... + ....+|+.|+|+|+++. ..|..|.|.|.+....-.+
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~IppG~~ 227 (374)
T PRK14293 160 PTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIE------------DPCDACGGQGVKQVTKKLKINIPAGVD 227 (374)
T ss_pred CeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEec------------cCCCCCCCCcccccceEEEEEeCCCCC
Confidence 46799999999642 1 12468999999998754 5799999999764321111
Q ss_pred ------ccC----------ceEE---------------------------------------EeeeeEEEEeCCCCCCCC
Q 010831 285 ------CSG----------EGRI---------------------------------------RLKKNIKVKVPPGVSTGS 309 (499)
Q Consensus 285 ------C~G----------~G~v---------------------------------------~~~k~l~V~IP~Gv~~G~ 309 (499)
-.| .|.+ .....++|+||+|+++|+
T Consensus 228 ~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldG~~~i~ip~~~~~g~ 307 (374)
T PRK14293 228 TGTRLRVSGEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDGPVELTIPAGTQPNT 307 (374)
T ss_pred CCCEEEEccCccCCCCCCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEecCCCCCEEEEeCCCCCCCC
Confidence 111 1211 113347899999999999
Q ss_pred EEEEcccCCCCCCC-CCCccEEEEEEEEeccccccCCcceEEE
Q 010831 310 ILRVVGEGDAGPRG-GPPGDLYVYLDVEEIPGIQRDGIDLFST 351 (499)
Q Consensus 310 ~Irl~G~G~~~~~g-g~~GDL~V~i~v~~h~~f~R~G~DL~~~ 351 (499)
+++|+|+|.+...+ +..|||||+|+|..|+.+++++.+|+..
T Consensus 308 ~~ri~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~l~~~ 350 (374)
T PRK14293 308 VLTLENKGVPRLGNPVARGDHLITVKVKIPTRISDEERELLEK 350 (374)
T ss_pred EEEECCCCCCCCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 99999999986543 3579999999999999999998887654
No 81
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.23 E-value=2e-11 Score=128.59 Aligned_cols=114 Identities=31% Similarity=0.609 Sum_probs=83.5
Q ss_pred eeeecccccCcccccCc---------ceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeee--------
Q 010831 221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCR-------- 283 (499)
Q Consensus 221 ~~~~C~~C~GsG~~~g~---------~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~-------- 283 (499)
....|+.|+|+|..... ...+|+.|+|+|+++. ..|..|+|.|.+....-.
T Consensus 170 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~ 237 (386)
T PRK14289 170 GSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIK------------KKCKKCGGEGIVYGEEVITVKIPAGV 237 (386)
T ss_pred CCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccC------------cCCCCCCCCcEEeeeEEEEEEeCCCC
Confidence 45789999999975322 2568999999998753 579999999986543111
Q ss_pred ------eccCc----------eEE---------------------------------------EeeeeEEEEeCCCCCCC
Q 010831 284 ------KCSGE----------GRI---------------------------------------RLKKNIKVKVPPGVSTG 308 (499)
Q Consensus 284 ------~C~G~----------G~v---------------------------------------~~~k~l~V~IP~Gv~~G 308 (499)
.-.|+ |.+ .....++|.||+|+++|
T Consensus 238 ~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g 317 (386)
T PRK14289 238 AEGMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTIDGKAKVKIEAGTQPG 317 (386)
T ss_pred CCCCEEEEeccccCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEeecCCceEEEEECCccCCC
Confidence 11111 211 12345899999999999
Q ss_pred CEEEEcccCCCCCCCCCCccEEEEEEEEeccccccCCc
Q 010831 309 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGI 346 (499)
Q Consensus 309 ~~Irl~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~ 346 (499)
++++|+|+|.+.+.++..|||||+|+|+-+..+..+..
T Consensus 318 ~~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~q~ 355 (386)
T PRK14289 318 KVLRLRNKGLPSVNGYGTGDLLVNVSVYIPETLSKEEK 355 (386)
T ss_pred cEEEECCCCcCCCCCCCCCcEEEEEEEEeCCCCCHHHH
Confidence 99999999998766667899999999998866554433
No 82
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.22 E-value=2.6e-11 Score=127.49 Aligned_cols=114 Identities=28% Similarity=0.584 Sum_probs=82.4
Q ss_pred eeecccccCcccccC---------cceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeec-------
Q 010831 222 LETCEVCTGTGAKMG---------SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------- 285 (499)
Q Consensus 222 ~~~C~~C~GsG~~~g---------~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C------- 285 (499)
...|+.|+|+|.... ....+|+.|+|+|.++. ..|..|+|.|.+....-...
T Consensus 165 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~i~V~Ip~G~~ 232 (380)
T PRK14297 165 PKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIE------------DPCNKCHGKGKVRKNRKIKVNVPAGVD 232 (380)
T ss_pred CccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcC------------CCCCCCCCCeEEEeEeEEEEEeCCCCC
Confidence 467999999996521 23678999999998753 67999999996533211111
Q ss_pred -------cCc----------eEE---------------------------------------EeeeeEEEEeCCCCCCCC
Q 010831 286 -------SGE----------GRI---------------------------------------RLKKNIKVKVPPGVSTGS 309 (499)
Q Consensus 286 -------~G~----------G~v---------------------------------------~~~k~l~V~IP~Gv~~G~ 309 (499)
.|+ |.+ .....++|+||+|+++|+
T Consensus 233 ~G~~I~l~g~G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~~~v~ip~g~~~g~ 312 (380)
T PRK14297 233 TGNVIPLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVDGEVKYEVPAGTQPGT 312 (380)
T ss_pred CCcEEEEecCccCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEEcCCCcEEEEECCCcCCCC
Confidence 111 111 123458999999999999
Q ss_pred EEEEcccCCCCCCCCCCccEEEEEEEEeccccccCCcc
Q 010831 310 ILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGID 347 (499)
Q Consensus 310 ~Irl~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~D 347 (499)
+++|+|+|.+...++..|||||+|+|..+..+..+...
T Consensus 313 ~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~~ 350 (380)
T PRK14297 313 VFRLKGKGVPRVNSTGRGNQYVTVIVDIPKKLNSKQKE 350 (380)
T ss_pred EEEEcCCCcCCCCCCCCCcEEEEEEEEcCCCCCHHHHH
Confidence 99999999986666678999999999988766544443
No 83
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.21 E-value=3.3e-11 Score=126.98 Aligned_cols=115 Identities=32% Similarity=0.625 Sum_probs=83.1
Q ss_pred eeecccccCcccccC---------cceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeec-------
Q 010831 222 LETCEVCTGTGAKMG---------SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------- 285 (499)
Q Consensus 222 ~~~C~~C~GsG~~~g---------~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C------- 285 (499)
...|+.|+|+|.... ....+|+.|+|+|.++. ..|..|+|.|.+....-.+.
T Consensus 172 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~ 239 (386)
T PRK14277 172 PVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIIT------------DPCNKCGGTGRIRRRRKIKVNIPAGID 239 (386)
T ss_pred CccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeecc------------CCCCCCCCCcEEeeeeEEEEecCCCcc
Confidence 467999999996421 12468999999998754 67999999998644322111
Q ss_pred -------cCc----------eEE---------------------------------------EeeeeEEEEeCCCCCCCC
Q 010831 286 -------SGE----------GRI---------------------------------------RLKKNIKVKVPPGVSTGS 309 (499)
Q Consensus 286 -------~G~----------G~v---------------------------------------~~~k~l~V~IP~Gv~~G~ 309 (499)
.|+ |.+ ..+..++|.||+|+++|+
T Consensus 240 ~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~ 319 (386)
T PRK14277 240 DGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLDGKVKFTIPEGTQTGT 319 (386)
T ss_pred CCcEEEEccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEEcCCCCEEEEECCCCCCCC
Confidence 221 111 112347999999999999
Q ss_pred EEEEcccCCCCCCCCCCccEEEEEEEEeccccccCCcce
Q 010831 310 ILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDL 348 (499)
Q Consensus 310 ~Irl~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL 348 (499)
+++|+|+|.+...+...|||||+|+|..+..++.+..++
T Consensus 320 ~~ri~g~G~p~~~~~~~GDL~v~~~V~~P~~Ls~~qk~~ 358 (386)
T PRK14277 320 KFRLRGKGIPHLRGRGRGDQIVKVYIEVPKKLTEKQKEL 358 (386)
T ss_pred EEEECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHHHHH
Confidence 999999999866555679999999999887665544443
No 84
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.20 E-value=1.1e-11 Score=124.08 Aligned_cols=57 Identities=46% Similarity=0.609 Sum_probs=51.1
Q ss_pred CcCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--------cchHHHHHHHHHHHhhcchh
Q 010831 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--------PGATEKFKEISAAYEVLSDD 132 (499)
Q Consensus 76 ~~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~--------~~~~~~f~~i~~AY~vLsd~ 132 (499)
-.|+|+||||++++|.+|||+|||+|+++||||++.. +.++++|++|++||++|+..
T Consensus 199 ~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~ 263 (267)
T PRK09430 199 LEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ 263 (267)
T ss_pred HHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence 3689999999999999999999999999999999642 24779999999999999863
No 85
>PHA02624 large T antigen; Provisional
Probab=99.19 E-value=1.5e-11 Score=133.37 Aligned_cols=60 Identities=32% Similarity=0.538 Sum_probs=56.4
Q ss_pred CcCcchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhc
Q 010831 76 SGDYYATLGVPKSA--SGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMY 138 (499)
Q Consensus 76 ~~d~Y~vLgv~~~a--s~~eIk~ayrkla~~~HPD~~~~~~~~~~f~~i~~AY~vLsd~~kR~~Y 138 (499)
..++|++|||+++| +.+|||+|||++|++||||++ +++++|++|++||++|+|+.+|..|
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKg---Gdeekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG---GDEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC---CcHHHHHHHHHHHHHHhcHHHhhhc
Confidence 35899999999999 999999999999999999997 4578999999999999999999999
No 86
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.19 E-value=5.2e-11 Score=124.82 Aligned_cols=115 Identities=22% Similarity=0.535 Sum_probs=81.6
Q ss_pred eeecccccCcccccCc---------ceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeee--------
Q 010831 222 LETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRK-------- 284 (499)
Q Consensus 222 ~~~C~~C~GsG~~~g~---------~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~-------- 284 (499)
...|+.|+|+|..... ...+|+.|+|+|.+++ ..|+.|+|.|.+....-.+
T Consensus 166 ~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~~ 233 (372)
T PRK14296 166 IHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIK------------NKCKNCKGKGKYLERKKIEVNIPKGIR 233 (372)
T ss_pred CccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeec------------ccccCCCCceEEEEEEEEEEEECCCCC
Confidence 4679999999975322 2468999999998764 6799999999754321111
Q ss_pred ------ccCc----------eEE----------------------------------------EeeeeEEEEeCCCCCCC
Q 010831 285 ------CSGE----------GRI----------------------------------------RLKKNIKVKVPPGVSTG 308 (499)
Q Consensus 285 ------C~G~----------G~v----------------------------------------~~~k~l~V~IP~Gv~~G 308 (499)
-.|+ |.+ ..+..++|+||+|+++|
T Consensus 234 ~G~~i~~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~tldG~~~v~ip~~t~~g 313 (372)
T PRK14296 234 PNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKTLDGDIKYKLPKSINSN 313 (372)
T ss_pred CCCEEEEeccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEeeCCCCCEEEEECCccCCC
Confidence 1111 111 12334899999999999
Q ss_pred CEEEEcccCCCCC-CCCCCccEEEEEEEEeccccccCCcce
Q 010831 309 SILRVVGEGDAGP-RGGPPGDLYVYLDVEEIPGIQRDGIDL 348 (499)
Q Consensus 309 ~~Irl~G~G~~~~-~gg~~GDL~V~i~v~~h~~f~R~G~DL 348 (499)
++++|+|+|.+.. .++..|||||+|+|.-+..+..+...|
T Consensus 314 ~~~ri~GkGmP~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~ 354 (372)
T PRK14296 314 ELIIINNKGLYKSINKDKRGDLIIKVNIVVPKNLSKKEKEL 354 (372)
T ss_pred cEEEEcCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHH
Confidence 9999999999733 234579999999999887666544443
No 87
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.18 E-value=3.3e-11 Score=126.63 Aligned_cols=115 Identities=29% Similarity=0.609 Sum_probs=83.1
Q ss_pred eeecccccCcccccC---------cceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeec-------
Q 010831 222 LETCEVCTGTGAKMG---------SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC------- 285 (499)
Q Consensus 222 ~~~C~~C~GsG~~~g---------~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C------- 285 (499)
...|+.|+|+|.... ....+|+.|+|+|..+. .+|..|+|.|.+....-.++
T Consensus 163 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~IppG~~ 230 (378)
T PRK14283 163 VKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVE------------KPCSNCHGKGVVRETKTISVKIPAGVE 230 (378)
T ss_pred CccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecC------------CCCCCCCCceeeccceeEEEEECCCCC
Confidence 457999999997531 12578999999998753 67999999997644311111
Q ss_pred -------cCc----------eEE---------------------------------------EeeeeEEEEeCCCCCCCC
Q 010831 286 -------SGE----------GRI---------------------------------------RLKKNIKVKVPPGVSTGS 309 (499)
Q Consensus 286 -------~G~----------G~v---------------------------------------~~~k~l~V~IP~Gv~~G~ 309 (499)
.|+ |.+ .....++|.||+|+++|+
T Consensus 231 ~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g~ 310 (378)
T PRK14283 231 TGSRLRVSGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTIDGPVELKIPAGTQSGT 310 (378)
T ss_pred CCcEEEEeccccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEEcCCceEEEEeCCCCCCCC
Confidence 111 111 123368999999999999
Q ss_pred EEEEcccCCCCCCCCCCccEEEEEEEEeccccccCCcce
Q 010831 310 ILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDL 348 (499)
Q Consensus 310 ~Irl~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL 348 (499)
+|+|+|+|.+...+...|||||+|+|..++.++.+...|
T Consensus 311 ~~ri~g~G~p~~~~~~~GdL~v~~~v~~P~~l~~~q~~l 349 (378)
T PRK14283 311 TFRLKGHGMPSLRWSGKGNLYVKVKVVVPKKLSPKQKEL 349 (378)
T ss_pred EEEECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHHHHH
Confidence 999999999866555789999999999887665544443
No 88
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.17 E-value=3.3e-11 Score=126.43 Aligned_cols=117 Identities=27% Similarity=0.593 Sum_probs=85.6
Q ss_pred eeeecccccCcccccCc---------ceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEce-----------
Q 010831 221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISE----------- 280 (499)
Q Consensus 221 ~~~~C~~C~GsG~~~g~---------~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~----------- 280 (499)
....|..|+|+|..... ...+|+.|+|.|+++. .+|..|.|.|.+...
T Consensus 156 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~ 223 (371)
T PRK14292 156 PPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIIT------------DPCTVCRGRGRTLKAETVKVKLPRGI 223 (371)
T ss_pred CCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecC------------CCCCCCCCceEEeecceEEEEECCCC
Confidence 35679999999965422 1468999999998643 679999999876432
Q ss_pred ---eeeeccCce--------EE------------------------------------E---eeeeEEEEeCCCCCCCCE
Q 010831 281 ---YCRKCSGEG--------RI------------------------------------R---LKKNIKVKVPPGVSTGSI 310 (499)
Q Consensus 281 ---~C~~C~G~G--------~v------------------------------------~---~~k~l~V~IP~Gv~~G~~ 310 (499)
.-....|+| .+ . ....++|.||+|+++|++
T Consensus 224 ~~G~~i~~~G~G~~~~~~~GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~ 303 (371)
T PRK14292 224 DEGYRIRVAGMGNEGPGGNGDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQVIEVKPGTQHGDL 303 (371)
T ss_pred CCCcEEEEecCcCCCCCCCCCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEECCCCCEEEecCCCcCCCcE
Confidence 111223332 11 1 123457999999999999
Q ss_pred EEEcccCCCCCCCCCCccEEEEEEEEeccccccCCcceE
Q 010831 311 LRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLF 349 (499)
Q Consensus 311 Irl~G~G~~~~~gg~~GDL~V~i~v~~h~~f~R~G~DL~ 349 (499)
++|+|+|++...+..+|||||+|+|+.|+.|+.+...|+
T Consensus 304 ~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll 342 (371)
T PRK14292 304 HRLRGQGMPRLQGAGTGDLIVEYEIAVPKQLSPEAREAL 342 (371)
T ss_pred EEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence 999999998766667899999999999988876665544
No 89
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.14 E-value=2.1e-10 Score=120.78 Aligned_cols=105 Identities=34% Similarity=0.675 Sum_probs=77.6
Q ss_pred eeecccccCcccccC-----cceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeee-------------
Q 010831 222 LETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCR------------- 283 (499)
Q Consensus 222 ~~~C~~C~GsG~~~g-----~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~------------- 283 (499)
...|+.|+|+|.... ....+|+.|+|+|. ++ ..|..|+|.|.+....-.
T Consensus 173 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~-~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~ 239 (382)
T PRK14291 173 EKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGV-LR------------EPCSKCNGRGLVIKKETIKVRIPPGVDNGSK 239 (382)
T ss_pred CccCCCCCCceEEEEecceEEEEecCCCCCCceE-Ec------------cCCCCCCCCceEEeeeEEEEEeCCCCCCCCE
Confidence 567999999996421 23578999999994 22 579999999976432111
Q ss_pred -eccCceE----------E----------------------------------------EeeeeEEEEeCCCCCCCCEEE
Q 010831 284 -KCSGEGR----------I----------------------------------------RLKKNIKVKVPPGVSTGSILR 312 (499)
Q Consensus 284 -~C~G~G~----------v----------------------------------------~~~k~l~V~IP~Gv~~G~~Ir 312 (499)
...|+|. + ...+.++|+||+|+++|++|+
T Consensus 240 i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~l~V~Ip~g~~~G~~i~ 319 (382)
T PRK14291 240 LRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKKEKVKIPPGTKEGDKIR 319 (382)
T ss_pred EEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEecCCCCEEEEEECCccCCCCEEE
Confidence 1122221 0 123468999999999999999
Q ss_pred EcccCCCCCCCCCCccEEEEEEEEecc
Q 010831 313 VVGEGDAGPRGGPPGDLYVYLDVEEIP 339 (499)
Q Consensus 313 l~G~G~~~~~gg~~GDL~V~i~v~~h~ 339 (499)
|+|+|++...+..+|||||+|+|..+.
T Consensus 320 i~G~G~p~~~~~~~GDL~V~~~V~~P~ 346 (382)
T PRK14291 320 VPGKGMPRLKGSGYGDLVVRVHIDVPK 346 (382)
T ss_pred ECCCCCCCCCCCCCCCEEEEEEEEeCC
Confidence 999999876556789999999999885
No 90
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.12 E-value=1e-10 Score=124.14 Aligned_cols=115 Identities=24% Similarity=0.534 Sum_probs=81.9
Q ss_pred eeeecccccCcccccC---------cceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeee--------
Q 010831 221 HLETCEVCTGTGAKMG---------SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCR-------- 283 (499)
Q Consensus 221 ~~~~C~~C~GsG~~~g---------~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~-------- 283 (499)
....|+.|+|+|.... ....+|+.|+|+|.++... .+|..|+|.|.+....-.
T Consensus 165 ~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~----------~~C~~C~G~g~v~~~~~l~V~Ip~G~ 234 (421)
T PTZ00037 165 AFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPES----------KKCKNCSGKGVKKTRKILEVNIDKGV 234 (421)
T ss_pred CCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceecccc----------ccCCcCCCcceeeeeeEEEEeeCCCC
Confidence 3467999999996321 1256899999999876422 579999999986543111
Q ss_pred ------eccCceE---------E----------------------------------------EeeeeEEEEeCCC--CC
Q 010831 284 ------KCSGEGR---------I----------------------------------------RLKKNIKVKVPPG--VS 306 (499)
Q Consensus 284 ------~C~G~G~---------v----------------------------------------~~~k~l~V~IP~G--v~ 306 (499)
.-.|+|. + ...+.|+|+||+| ++
T Consensus 235 ~dG~~I~~~G~Gd~~~~~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLdG~~l~I~ip~g~vt~ 314 (421)
T PTZ00037 235 PNQHKITFHGEADEKPNEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVK 314 (421)
T ss_pred CCCcEEEEecccCCCCCCCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCCCCeEEEEeCCCcccC
Confidence 1122221 1 2245689999999 99
Q ss_pred CCCEEEEcccCCCCCCC-CCCccEEEEEEEEec--cccccCC
Q 010831 307 TGSILRVVGEGDAGPRG-GPPGDLYVYLDVEEI--PGIQRDG 345 (499)
Q Consensus 307 ~G~~Irl~G~G~~~~~g-g~~GDL~V~i~v~~h--~~f~R~G 345 (499)
+|++++|+|+|.+...+ +..|||||+|+|..+ ..++.+.
T Consensus 315 pg~~~~I~geGmP~~~~~~~rGDL~V~~~V~~P~~~~Ls~~q 356 (421)
T PTZ00037 315 PGDIKVINNEGMPTYKSPFKKGNLYVTFEVIFPVDRKFTNEE 356 (421)
T ss_pred CCcEEEeCCCCcccCCCCCCCCCEEEEEEEEcCCCCCCCHHH
Confidence 99999999999985443 457999999999988 6555443
No 91
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.06 E-value=9.9e-11 Score=120.73 Aligned_cols=73 Identities=36% Similarity=0.614 Sum_probs=66.2
Q ss_pred CcCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC------cchHHHHHHHHHHHhhcchhhhhhhcccccccCccc
Q 010831 76 SGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE------PGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVKS 148 (499)
Q Consensus 76 ~~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~------~~~~~~f~~i~~AY~vLsd~~kR~~YD~~G~~~~~~ 148 (499)
..|+|||||++.+++..|||++||+|..|||||+.+. .+.+|++++|+.||+.|+|...|+.|=.||.....+
T Consensus 97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~pQ 175 (610)
T COG5407 97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDSPQ 175 (610)
T ss_pred CCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCCCc
Confidence 4599999999999999999999999999999999764 356899999999999999999999999999876553
No 92
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.95 E-value=1.1e-09 Score=102.72 Aligned_cols=64 Identities=23% Similarity=0.317 Sum_probs=55.7
Q ss_pred CcCcchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHhhcchhhhhhhcc
Q 010831 76 SGDYYATLGVPKS--ASGKEIKAAYRKLARQYHPDVNKEPG------ATEKFKEISAAYEVLSDDKKRAMYD 139 (499)
Q Consensus 76 ~~d~Y~vLgv~~~--as~~eIk~ayrkla~~~HPD~~~~~~------~~~~f~~i~~AY~vLsd~~kR~~YD 139 (499)
+.|||++|||++. .+..+++++||+|.+++|||+..... +.+.-..||+||.+|+||.+|+.|=
T Consensus 1 ~~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YL 72 (173)
T PRK01773 1 MNNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAI 72 (173)
T ss_pred CCChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHH
Confidence 4699999999996 89999999999999999999975432 3345678999999999999999983
No 93
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.88 E-value=2.3e-09 Score=99.27 Aligned_cols=53 Identities=30% Similarity=0.448 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCc------chHHHHHHHHHHHhhcchhhhhhhcccc
Q 010831 89 ASGKEIKAAYRKLARQYHPDVNKEP------GATEKFKEISAAYEVLSDDKKRAMYDQY 141 (499)
Q Consensus 89 as~~eIk~ayrkla~~~HPD~~~~~------~~~~~f~~i~~AY~vLsd~~kR~~YD~~ 141 (499)
.+..+|+++||+|+++||||+.... .+.+.|..||+||++|+||.+|+.|+.-
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~ 61 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLS 61 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence 4778999999999999999986432 1567899999999999999999999864
No 94
>PRK14299 chaperone protein DnaJ; Provisional
Probab=98.86 E-value=7.3e-09 Score=105.26 Aligned_cols=72 Identities=29% Similarity=0.442 Sum_probs=64.2
Q ss_pred cccCCcceEEEeeeCHHhhhCCCEEEEeccCCe-EeEEeCCCCCCCcEEEeccCCCCCCCCCCCCCcEEEEEEEEcCCCC
Q 010831 341 IQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRI 419 (499)
Q Consensus 341 f~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~-~~l~ip~gtq~g~~~~l~G~GmP~~~~~~~rGDL~V~~~V~~P~~L 419 (499)
+.|+|.||++++.|+|.||++|+++.| +++|. ++|+||+|+++|++++++|+|++. |||||+|+|.-+..+
T Consensus 125 ~~~~g~dl~~~l~isL~ea~~G~~~~i-~l~g~~~~V~Ip~G~~~G~~ir~~g~G~~~-------GDL~v~i~v~~h~~f 196 (291)
T PRK14299 125 RARKGRDLEAELPLTLEEAYRGGEKVV-EVAGERLSVRIPPGVREGQVIRLAGKGRQG-------GDLYLVVRLLPHPVF 196 (291)
T ss_pred CCCCCCCEEEEEEecHHHHhCCCeEEE-eeCCEEEEEecCCCcCCCcEEEECCCCCCC-------CCEEEEEEEcCCCCe
Confidence 457899999999999999999999998 78884 799999999999999999999873 999999999876654
Q ss_pred C
Q 010831 420 S 420 (499)
Q Consensus 420 s 420 (499)
.
T Consensus 197 ~ 197 (291)
T PRK14299 197 R 197 (291)
T ss_pred E
Confidence 3
No 95
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=98.76 E-value=1.3e-08 Score=88.22 Aligned_cols=61 Identities=36% Similarity=0.743 Sum_probs=50.0
Q ss_pred ceeeecccccCcccccCcceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeeccCceEEE
Q 010831 220 SHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIR 292 (499)
Q Consensus 220 ~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~ 292 (499)
...+.|..|+|+|.. +|+.|+|+|.++... .+.+++..+|+.|+|.|++ +|..|+|.|++.
T Consensus 39 ~~~v~C~~C~GsG~~------~C~~C~G~G~v~~~~---~g~~q~~~~C~~C~G~Gk~---~C~~C~G~G~~~ 99 (111)
T PLN03165 39 ENTQPCFPCSGTGAQ------VCRFCVGSGNVTVEL---GGGEKEVSKCINCDGAGSL---TCTTCQGSGIQP 99 (111)
T ss_pred ccCCCCCCCCCCCCc------CCCCCcCcCeEEEEe---CCcEEEEEECCCCCCccee---eCCCCCCCEEEe
Confidence 345789999999973 899999999987543 2346667899999999985 499999999864
No 96
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=98.75 E-value=8.6e-09 Score=84.85 Aligned_cols=49 Identities=43% Similarity=0.758 Sum_probs=38.4
Q ss_pred eeEEEEeCCCCCCCCEEEEcccCCCCCCCC-CCccEEEEEEEEecccccc
Q 010831 295 KNIKVKVPPGVSTGSILRVVGEGDAGPRGG-PPGDLYVYLDVEEIPGIQR 343 (499)
Q Consensus 295 k~l~V~IP~Gv~~G~~Irl~G~G~~~~~gg-~~GDL~V~i~v~~h~~f~R 343 (499)
++++|.||+|+++|++++++|+|.+...+. ..|||||+|+|.-+..++.
T Consensus 27 ~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls~ 76 (81)
T PF01556_consen 27 KTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLSP 76 (81)
T ss_dssp -EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTSH
T ss_pred CEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCCH
Confidence 478899999999999999999999765554 7999999999998876653
No 97
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=1.1e-08 Score=99.62 Aligned_cols=73 Identities=38% Similarity=0.446 Sum_probs=63.6
Q ss_pred cccccccCcCcchhcCCCC---CCCHHHHHHHHHHHHHHhCCCCCC---CcchHHHHHHHHHHHhhcchhhhhhhcccc
Q 010831 69 GRSVVCASGDYYATLGVPK---SASGKEIKAAYRKLARQYHPDVNK---EPGATEKFKEISAAYEVLSDDKKRAMYDQY 141 (499)
Q Consensus 69 ~~~~~~~~~d~Y~vLgv~~---~as~~eIk~ayrkla~~~HPD~~~---~~~~~~~f~~i~~AY~vLsd~~kR~~YD~~ 141 (499)
|...-+...|+|.+|||+. .|++.+|.+|.++.+.+||||+.. +.+..+.|+.|+.||+||+|+.+|.+||.-
T Consensus 35 ~d~k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~ 113 (379)
T COG5269 35 EDFKNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSN 113 (379)
T ss_pred hhhhhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcccc
Confidence 4445566789999999987 688999999999999999999863 346778999999999999999999999974
No 98
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=98.66 E-value=7.4e-08 Score=98.61 Aligned_cols=74 Identities=18% Similarity=0.370 Sum_probs=61.6
Q ss_pred cCCcceEEEeeeCHHhhhCCCEEEE----eccC--C--------eEeEEeCCCCCCCcEEEeccCCCCCCCCCCCCCcEE
Q 010831 343 RDGIDLFSTISISYLDAIMGTVVKV----KTVE--G--------ISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHL 408 (499)
Q Consensus 343 R~G~DL~~~~~Isl~eAllG~~~~I----~tld--G--------~~~l~ip~gtq~g~~~~l~G~GmP~~~~~~~rGDL~ 408 (499)
+.|.||++++.|+|.||+.|+..+| ++++ | .++|+||+|+++|++++++|+|+|..++ ..+||||
T Consensus 115 ~kg~di~~~v~isLee~~~G~~k~i~~~~~~~~g~G~~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~-~~~GDl~ 193 (306)
T PRK10266 115 ARGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENG-GPNGDLW 193 (306)
T ss_pred CCCCceEEEEEEEHHHhcCCceEEEEEecccccCCCeEEEeeeEEEEEEECCCCcCCcEEEEecCCcCCCCC-CCCccEE
Confidence 4688999999999999999996554 4444 3 3588899999999999999999997543 4689999
Q ss_pred EEEEEEcCCC
Q 010831 409 FTVKVTIPNR 418 (499)
Q Consensus 409 V~~~V~~P~~ 418 (499)
|+|+|. |..
T Consensus 194 v~i~v~-ph~ 202 (306)
T PRK10266 194 LVIHIA-PHP 202 (306)
T ss_pred EEEEEc-CCC
Confidence 999999 654
No 99
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=3.4e-08 Score=92.51 Aligned_cols=63 Identities=30% Similarity=0.481 Sum_probs=57.3
Q ss_pred cCcCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHhhcchhhhhhh
Q 010831 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--PGATEKFKEISAAYEVLSDDKKRAM 137 (499)
Q Consensus 75 ~~~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~--~~~~~~f~~i~~AY~vLsd~~kR~~ 137 (499)
-+-|+|+||.|.+..+.++||+.||+|+...|||+|++ +.|...|.-|..||..|-|+..|..
T Consensus 51 fnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr 115 (250)
T KOG1150|consen 51 FNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKR 115 (250)
T ss_pred cccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 36789999999999999999999999999999999996 5688899999999999999986543
No 100
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=6.9e-07 Score=91.36 Aligned_cols=46 Identities=35% Similarity=0.480 Sum_probs=40.9
Q ss_pred eeeeEEEEeCCC--CCCCCEEEEcccCCCCCCCCCCccEEEEEEEEecc
Q 010831 293 LKKNIKVKVPPG--VSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIP 339 (499)
Q Consensus 293 ~~k~l~V~IP~G--v~~G~~Irl~G~G~~~~~gg~~GDL~V~i~v~~h~ 339 (499)
..+.|++.++|| +.+|+++++.|+|++-.+.. .|||||.++|+.++
T Consensus 277 dGr~l~~~~~pg~vi~~~~~~~v~~~gmp~~~~~-~g~lyi~~~v~fp~ 324 (337)
T KOG0712|consen 277 DGRLLKLSSKPGEVISPGDTKRVEGEGMPIFRNP-KGDLYIKFEVKFPK 324 (337)
T ss_pred CCceEEEecCCCceeChhHEEeecCCCcccccCC-CCcEEEEEEEEcCC
Confidence 357789999999 89999999999999976554 99999999999887
No 101
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=1.1e-06 Score=84.06 Aligned_cols=55 Identities=33% Similarity=0.655 Sum_probs=51.3
Q ss_pred CcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHh-hcchh
Q 010831 78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYE-VLSDD 132 (499)
Q Consensus 78 d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~~~~~~~f~~i~~AY~-vLsd~ 132 (499)
.||.+|||...|+.+|++.||.+||+++|||...+....++|.+|.+||. ||+..
T Consensus 48 e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~~ 103 (342)
T KOG0568|consen 48 ECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQEK 103 (342)
T ss_pred HHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999887778899999999998 88753
No 102
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=98.23 E-value=8.6e-07 Score=83.84 Aligned_cols=49 Identities=31% Similarity=0.642 Sum_probs=44.9
Q ss_pred eeeCCCCCCCCEEEc--eeeeeccCceEEEeeeeEEEEeCCCCCCCCEEEEc
Q 010831 265 VSVCPSCGGEGEVIS--EYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVV 314 (499)
Q Consensus 265 ~~~C~~C~G~G~~i~--~~C~~C~G~G~v~~~k~l~V~IP~Gv~~G~~Irl~ 314 (499)
..+|+.|+|+|++|. ++|++|+|.|+++.+.++.+++ .|+.+|++|++.
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~~~~~~k~-~g~~~g~~it~~ 149 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFRPTVEDLLKS-FGVDSGAAIVLK 149 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCccEEeeeEEEEEEe-eeccCCceeeHH
Confidence 478999999999987 7899999999999999999999 999999999874
No 103
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=2e-06 Score=96.57 Aligned_cols=54 Identities=35% Similarity=0.508 Sum_probs=46.3
Q ss_pred CcCcchhcCCCCC----CCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcch
Q 010831 76 SGDYYATLGVPKS----ASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSD 131 (499)
Q Consensus 76 ~~d~Y~vLgv~~~----as~~eIk~ayrkla~~~HPD~~~~~~~~~~f~~i~~AY~vLsd 131 (499)
..+-|+||.|+-+ -..+.||++|+|||.+||||+|| +-.++|..||+|||.|+.
T Consensus 1280 ~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNP--EGRemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1280 VDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNP--EGREMFERVNKAYELLSS 1337 (2235)
T ss_pred hHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHHHHHHHH
Confidence 3578999999763 23478999999999999999994 678999999999999983
No 104
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=4.7e-05 Score=64.83 Aligned_cols=52 Identities=29% Similarity=0.365 Sum_probs=45.2
Q ss_pred CcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchh
Q 010831 78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDD 132 (499)
Q Consensus 78 d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~~~~~~~f~~i~~AY~vLsd~ 132 (499)
.--.||||+++++.+.||+|+||+....|||+...| ..-.+||||+++|...
T Consensus 57 EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSP---YlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 57 EAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSP---YLASKINEAKDLLEGT 108 (112)
T ss_pred HHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCH---HHHHHHHHHHHHHhcc
Confidence 456799999999999999999999999999998544 5566899999999753
No 105
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.66 E-value=2.7e-05 Score=83.55 Aligned_cols=68 Identities=31% Similarity=0.736 Sum_probs=45.0
Q ss_pred eecccccCcccccCcceeeccCCCCcceEEEEee--------CCccceee-eeeCCCCCCCCEEE-ceeeeeccCceEE
Q 010831 223 ETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQ--------TPFGLFSQ-VSVCPSCGGEGEVI-SEYCRKCSGEGRI 291 (499)
Q Consensus 223 ~~C~~C~GsG~~~g~~~~~C~~C~G~G~v~~~~~--------~~~g~~~~-~~~C~~C~G~G~~i-~~~C~~C~G~G~v 291 (499)
..|+.|+|+|...- ....|+.|+|+|.+-.... -..-.|.. ..+|+.|.|+|++- -+.|..|.|.|.+
T Consensus 3 ~~C~~C~g~G~i~v-~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~gkv 80 (715)
T COG1107 3 KKCPECGGKGKIVV-GEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGKV 80 (715)
T ss_pred ccccccCCCceEee-eeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCCceeE
Confidence 46888988886543 3467999999887622110 00112223 35888888888875 4788888888876
No 106
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=97.50 E-value=5.8e-05 Score=59.71 Aligned_cols=44 Identities=32% Similarity=0.881 Sum_probs=30.8
Q ss_pred eeeecccccCcccccCc---------ceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCC
Q 010831 221 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEG 275 (499)
Q Consensus 221 ~~~~C~~C~GsG~~~g~---------~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G 275 (499)
....|+.|+|+|..... ...+|+.|+|+|+++ . ..+|+.|+|.|
T Consensus 14 ~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i-~----------~~~C~~C~G~g 66 (66)
T PF00684_consen 14 KPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII-E----------KDPCKTCKGSG 66 (66)
T ss_dssp T-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE--T----------SSB-SSSTTSS
T ss_pred CCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE-C----------CCCCCCCCCcC
Confidence 34589999999976432 267899999999886 1 17899999986
No 107
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=97.49 E-value=0.00035 Score=77.93 Aligned_cols=71 Identities=55% Similarity=0.918 Sum_probs=67.2
Q ss_pred cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhcccccccCcc
Q 010831 77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEAGVK 147 (499)
Q Consensus 77 ~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~~~~~~~f~~i~~AY~vLsd~~kR~~YD~~G~~~~~ 147 (499)
.|||+||||+++|+.++||+|||+||++||||+++.+.+.++|++|++||++|+||.+|+.||+||..+..
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~d 72 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDGVD 72 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccccc
Confidence 58999999999999999999999999999999998878889999999999999999999999999987654
No 108
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.00048 Score=69.20 Aligned_cols=31 Identities=35% Similarity=0.761 Sum_probs=19.4
Q ss_pred eCCCCCCCCEEEceeeeeccCceEEEeeeeEEEE
Q 010831 267 VCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVK 300 (499)
Q Consensus 267 ~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~ 300 (499)
.|++|.|.|. .+|.+|.|.|-+..-..+.|.
T Consensus 247 ~C~tC~grG~---k~C~TC~gtgsll~~t~~vV~ 277 (406)
T KOG2813|consen 247 ECHTCKGRGK---KPCTTCSGTGSLLNYTRIVVY 277 (406)
T ss_pred cCCcccCCCC---cccccccCccceeeeEEEEEE
Confidence 4666666654 578888888876544444443
No 109
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.0013 Score=59.87 Aligned_cols=65 Identities=25% Similarity=0.465 Sum_probs=52.0
Q ss_pred cCcCcchhcCCCC--CCCHHHHHHHHHHHHHHhCCCCCCC------cchHHHHHHHHHHHhhcchhhhhhhcc
Q 010831 75 ASGDYYATLGVPK--SASGKEIKAAYRKLARQYHPDVNKE------PGATEKFKEISAAYEVLSDDKKRAMYD 139 (499)
Q Consensus 75 ~~~d~Y~vLgv~~--~as~~eIk~ayrkla~~~HPD~~~~------~~~~~~f~~i~~AY~vLsd~~kR~~YD 139 (499)
...+||.++|... ...+.-++.-|--..++.|||+... .-+.+.-.++|+||.+|.||-+|+.|=
T Consensus 6 ~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yi 78 (168)
T KOG3192|consen 6 SPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYL 78 (168)
T ss_pred hHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3568999998544 5566667768999999999998431 236678899999999999999999994
No 110
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=96.46 E-value=0.0021 Score=69.45 Aligned_cols=45 Identities=33% Similarity=0.886 Sum_probs=35.9
Q ss_pred eeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEc---------------------eeeeeccCceEEEe
Q 010831 239 MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS---------------------EYCRKCSGEGRIRL 293 (499)
Q Consensus 239 ~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~---------------------~~C~~C~G~G~v~~ 293 (499)
..+|+.|+|+|++... ...|+.|+|+|++-. -+|..|+|.|.|..
T Consensus 2 ~~~C~~C~g~G~i~v~----------~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v 67 (715)
T COG1107 2 IKKCPECGGKGKIVVG----------EEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTV 67 (715)
T ss_pred CccccccCCCceEeee----------eeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEE
Confidence 3689999999987543 368999999998521 19999999998853
No 111
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=96.36 E-value=0.0027 Score=55.36 Aligned_cols=40 Identities=30% Similarity=0.829 Sum_probs=31.1
Q ss_pred ecccccCcccccC------cceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEE
Q 010831 224 TCEVCTGTGAKMG------SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVI 278 (499)
Q Consensus 224 ~C~~C~GsG~~~g------~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i 278 (499)
.|+.|+|+|.... ....+|+.|+|+|++ .|+.|.|.|.+.
T Consensus 54 ~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~---------------~C~~C~G~G~~~ 99 (111)
T PLN03165 54 VCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSL---------------TCTTCQGSGIQP 99 (111)
T ss_pred CCCCCcCcCeEEEEeCCcEEEEEECCCCCCccee---------------eCCCCCCCEEEe
Confidence 7999999987532 125689999999952 499999999864
No 112
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.0044 Score=58.41 Aligned_cols=53 Identities=42% Similarity=0.552 Sum_probs=46.0
Q ss_pred cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--------cchHHHHHHHHHHHhhc
Q 010831 77 GDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKE--------PGATEKFKEISAAYEVL 129 (499)
Q Consensus 77 ~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~--------~~~~~~f~~i~~AY~vL 129 (499)
.|.|.+|++...+...+|+++|+++...+|||+-.. ..+.+++++|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 689999999999999999999999999999997432 24678899999999853
No 113
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=95.85 E-value=0.0056 Score=58.15 Aligned_cols=29 Identities=31% Similarity=0.807 Sum_probs=14.6
Q ss_pred eeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEE
Q 010831 240 RICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVI 278 (499)
Q Consensus 240 ~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i 278 (499)
.+|+.|+|+|.+++.. .+|+.|+|+|++.
T Consensus 100 ~~C~~C~G~G~~i~~~----------~~C~~C~G~G~v~ 128 (186)
T TIGR02642 100 CKCPRCRGTGLIQRRQ----------RECDTCAGTGRFR 128 (186)
T ss_pred CcCCCCCCeeEEecCC----------CCCCCCCCccEEe
Confidence 3455555555544311 3466666666543
No 114
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.38 E-value=0.01 Score=55.99 Aligned_cols=63 Identities=33% Similarity=0.536 Sum_probs=49.1
Q ss_pred CcchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHhhcchhhhhhhccc
Q 010831 78 DYYATLGVPKSA--SGKEIKAAYRKLARQYHPDVNKEPG------ATEKFKEISAAYEVLSDDKKRAMYDQ 140 (499)
Q Consensus 78 d~Y~vLgv~~~a--s~~eIk~ayrkla~~~HPD~~~~~~------~~~~f~~i~~AY~vLsd~~kR~~YD~ 140 (499)
||+..+|..+.+ ..+.++..|+.+++.||||+..... +.+.+..++.||.+|.||.+|+.|=.
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~l 72 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLL 72 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 456666666644 3456899999999999999986432 23578899999999999999999853
No 115
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.90 E-value=0.028 Score=56.87 Aligned_cols=59 Identities=25% Similarity=0.599 Sum_probs=43.0
Q ss_pred eeecccccCcccc--cCcceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeeccCceEEE
Q 010831 222 LETCEVCTGTGAK--MGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIR 292 (499)
Q Consensus 222 ~~~C~~C~GsG~~--~g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~ 292 (499)
...|+.|+|+|.. .-..+..|++|-|- +.+ ..-+...|..|+|+|. .+|.+|.|.|...
T Consensus 198 ~~vc~gc~g~G~~~y~~~~~m~c~sc~G~--~~~-------k~gt~~~C~~C~G~G~---~~C~tC~grG~k~ 258 (406)
T KOG2813|consen 198 AMVCHGCSGSGSNSYGIGTPMHCMSCTGV--PPP-------KIGTHDLCYMCHGRGI---KECHTCKGRGKKP 258 (406)
T ss_pred ceeccCcCCCCccccccCcceecccccCC--CCC-------CCCccchhhhccCCCc---ccCCcccCCCCcc
Confidence 5789999999953 12247889999881 111 1223478999999997 6899999999864
No 116
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=93.34 E-value=0.09 Score=56.85 Aligned_cols=28 Identities=29% Similarity=0.396 Sum_probs=24.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCc
Q 010831 86 PKSASGKEIKAAYRKLARQYHPDVNKEP 113 (499)
Q Consensus 86 ~~~as~~eIk~ayrkla~~~HPD~~~~~ 113 (499)
..=.+.+++||||||..+..||||.+..
T Consensus 397 tDLVtp~~VKKaYrKA~L~VHPDKlqq~ 424 (453)
T KOG0431|consen 397 TDLVTPAQVKKAYRKAVLCVHPDKLQQK 424 (453)
T ss_pred hhccCHHHHHHHHHhhhheeCcccccCC
Confidence 3346899999999999999999998754
No 117
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=92.73 E-value=0.23 Score=44.43 Aligned_cols=55 Identities=24% Similarity=0.288 Sum_probs=42.0
Q ss_pred CcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhh
Q 010831 78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKR 135 (499)
Q Consensus 78 d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~~~~~~~f~~i~~AY~vLsd~~kR 135 (499)
.-..||||++.++.++|.+.|.+|-...+|++. ++...=.+|..|.|.|..+.+.
T Consensus 59 EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kG---GSfYLQSKV~rAKErl~~El~~ 113 (127)
T PF03656_consen 59 EARQILNVKEELSREEIQKRYKHLFKANDPSKG---GSFYLQSKVFRAKERLEQELKE 113 (127)
T ss_dssp HHHHHHT--G--SHHHHHHHHHHHHHHT-CCCT---S-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHhccCCCcC---CCHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999986 5666667899999999876544
No 118
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=90.03 E-value=0.45 Score=48.53 Aligned_cols=52 Identities=37% Similarity=0.712 Sum_probs=38.4
Q ss_pred eeecceeeecccccCcccc-----cCcceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEc
Q 010831 216 EFELSHLETCEVCTGTGAK-----MGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS 279 (499)
Q Consensus 216 ~i~v~~~~~C~~C~GsG~~-----~g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~ 279 (499)
.........|..|.|.|.. ......+|..|+|.|.+.. ..|..|.|.|.+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~~------------~~c~~~~g~~~v~~ 231 (288)
T KOG0715|consen 175 AEEGAKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLVLR------------DNCQACSGAGQVRR 231 (288)
T ss_pred cccccccccchhhhCcccccccccCCcceeecccccccceecc------------chHHHhhcchhhhh
Confidence 4456677899999999932 2222337999999998764 44999999996543
No 119
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=81.38 E-value=1.4 Score=44.20 Aligned_cols=50 Identities=32% Similarity=0.584 Sum_probs=31.5
Q ss_pred eecccccCcccccCcceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeec
Q 010831 223 ETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC 285 (499)
Q Consensus 223 ~~C~~C~GsG~~~g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C 285 (499)
-.|..|.|-+. ..|..|+|+-++... ....-....|..|+--|-+. |+.|
T Consensus 230 ~~C~~CGg~rF------lpC~~C~GS~kv~~~----~~~~~~~~rC~~CNENGLvr---Cp~C 279 (281)
T KOG2824|consen 230 GVCESCGGARF------LPCSNCHGSCKVHEE----EEDDGGVLRCLECNENGLVR---CPVC 279 (281)
T ss_pred CcCCCcCCcce------EecCCCCCceeeeee----ccCCCcEEECcccCCCCcee---CCcc
Confidence 56777777654 468888888776552 11222336788888877753 5555
No 120
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=81.13 E-value=2.9 Score=40.23 Aligned_cols=40 Identities=35% Similarity=0.434 Sum_probs=31.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchh
Q 010831 86 PKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDD 132 (499)
Q Consensus 86 ~~~as~~eIk~ayrkla~~~HPD~~~~~~~~~~f~~i~~AY~vLsd~ 132 (499)
+++|+.+||++|+.++..+|--| ++.-.+|..||+.+.=.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd-------~~~~~~IEaAYD~ILM~ 40 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGD-------EKSREAIEAAYDAILME 40 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHHHH
Confidence 57899999999999999999433 45566788999865433
No 121
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=80.02 E-value=1.1 Score=53.27 Aligned_cols=67 Identities=27% Similarity=0.527 Sum_probs=42.0
Q ss_pred cccccc--------cceeeeeecceeeecccccCcccccCcceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCE
Q 010831 205 EFSESI--------FGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGE 276 (499)
Q Consensus 205 tl~ea~--------~G~~k~i~v~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~ 276 (499)
++.+|+ .+...++++. ...|+.|..... ...|+.|+..-.. ...|+.|+..=.
T Consensus 643 ~I~kAa~~a~~~~d~~G~ieVEV~-~rkCPkCG~~t~-----~~fCP~CGs~te~-------------vy~CPsCGaev~ 703 (1337)
T PRK14714 643 DVAKAAKHAPDMSDEGGVIEVEVG-RRRCPSCGTETY-----ENRCPDCGTHTEP-------------VYVCPDCGAEVP 703 (1337)
T ss_pred cHHHHHHhhhhccccCCeEEEEEE-EEECCCCCCccc-----cccCcccCCcCCC-------------ceeCccCCCccC
Confidence 456666 4455555554 578999987543 2489999875311 147999998410
Q ss_pred ---EEceeeeeccCceE
Q 010831 277 ---VISEYCRKCSGEGR 290 (499)
Q Consensus 277 ---~i~~~C~~C~G~G~ 290 (499)
.....|+.|...-.
T Consensus 704 ~des~a~~CP~CGtplv 720 (1337)
T PRK14714 704 PDESGRVECPRCDVELT 720 (1337)
T ss_pred CCccccccCCCCCCccc
Confidence 01338999976554
No 122
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=78.90 E-value=5.6 Score=32.05 Aligned_cols=47 Identities=13% Similarity=0.194 Sum_probs=35.1
Q ss_pred cCcCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHH
Q 010831 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKE 121 (499)
Q Consensus 75 ~~~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~~~~~~~f~~ 121 (499)
|++|.-+++|+++-|++.||+.|-++.++|..=-..|.....+.|..
T Consensus 1 MCRNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS~~n~~AFe~ 47 (88)
T COG5552 1 MCRNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHPSAANAEAFEA 47 (88)
T ss_pred CccchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcchhhHHHHHH
Confidence 56777889999999999999999999999875444443334445543
No 123
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=77.39 E-value=2 Score=44.48 Aligned_cols=52 Identities=37% Similarity=0.553 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCC-----CcchHHHHHHHHHHHhhcchhhhhhhccc
Q 010831 89 ASGKEIKAAYRKLARQYHPDVNK-----EPGATEKFKEISAAYEVLSDDKKRAMYDQ 140 (499)
Q Consensus 89 as~~eIk~ayrkla~~~HPD~~~-----~~~~~~~f~~i~~AY~vLsd~~kR~~YD~ 140 (499)
++..+|..+|+..+...||++.. ....++.|++|.+||+||.+..+|..+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~ 60 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDS 60 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhh
Confidence 57789999999999999999863 22456789999999999998766555554
No 124
>PF13446 RPT: A repeated domain in UCH-protein
Probab=76.77 E-value=4.9 Score=30.96 Aligned_cols=44 Identities=18% Similarity=0.380 Sum_probs=32.2
Q ss_pred CcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcch
Q 010831 78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSD 131 (499)
Q Consensus 78 d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~~~~~~~f~~i~~AY~vLsd 131 (499)
+-|+.|||+++++++.|-.+|+.... -. | .......+|..++.+
T Consensus 6 ~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~-~~------P---~~~~~~r~AL~~Ia~ 49 (62)
T PF13446_consen 6 EAYEILGIDEDTDDDFIISAFQSKVN-DD------P---SQKDTLREALRVIAE 49 (62)
T ss_pred HHHHHhCcCCCCCHHHHHHHHHHHHH-cC------h---HhHHHHHHHHHHHHH
Confidence 46999999999999999999998886 11 2 223345566666654
No 125
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=75.83 E-value=2.3 Score=39.02 Aligned_cols=25 Identities=36% Similarity=0.753 Sum_probs=17.1
Q ss_pred eecccccCcccccCcceeeccCCCCcceEEE
Q 010831 223 ETCEVCTGTGAKMGSKMRICSTCGGRGQVMR 253 (499)
Q Consensus 223 ~~C~~C~GsG~~~g~~~~~C~~C~G~G~v~~ 253 (499)
..|..|.|.+. ..|..|+|+=.++.
T Consensus 100 ~~C~~Cgg~rf------v~C~~C~Gs~k~~~ 124 (147)
T cd03031 100 GVCEGCGGARF------VPCSECNGSCKVFA 124 (147)
T ss_pred CCCCCCCCcCe------EECCCCCCcceEEe
Confidence 45777777654 56888888776654
No 126
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=73.49 E-value=17 Score=34.87 Aligned_cols=75 Identities=27% Similarity=0.576 Sum_probs=39.5
Q ss_pred eccCCCCcceEE-EEee-CC-ccce-eeeeeCCCCCCCCEEEc------eeee--eccCce----EE-E------eeeeE
Q 010831 241 ICSTCGGRGQVM-RTDQ-TP-FGLF-SQVSVCPSCGGEGEVIS------EYCR--KCSGEG----RI-R------LKKNI 297 (499)
Q Consensus 241 ~C~~C~G~G~v~-~~~~-~~-~g~~-~~~~~C~~C~G~G~~i~------~~C~--~C~G~G----~v-~------~~k~l 297 (499)
.|+.|++.|... .... .| |+-+ .++..|+.|+=+-.-+. .... +..... +| + .--.|
T Consensus 2 ~Cp~C~~~~~~~~~~~~~IP~F~evii~sf~C~~CGyr~~ev~~~g~~~p~r~~l~V~~~~DL~r~VvkS~tati~IPEl 81 (192)
T TIGR00310 2 DCPSCGGECETVMKTVNDIPYFGEVLETSTICEHCGYRSNDVKTLGAKEPKRYILKIDDEADLNRRVVKSESATIRIPEL 81 (192)
T ss_pred cCCCCCCCCEEEEEEEcCCCCcceEEEEEEECCCCCCccceeEECCCCCCEEEEEEECChhcccceEEEcCCcEEEccce
Confidence 477887777653 2233 33 5544 34578999987754331 1111 111110 11 1 12346
Q ss_pred EEEeCCC-CCCCCEEEEcc
Q 010831 298 KVKVPPG-VSTGSILRVVG 315 (499)
Q Consensus 298 ~V~IP~G-v~~G~~Irl~G 315 (499)
.+.|||| ...|..-.+.|
T Consensus 82 ~lei~pg~~~~G~iTTVEG 100 (192)
T TIGR00310 82 GLDIEPGPTSGGFITNLEG 100 (192)
T ss_pred EEEECCCccCCceEEeeHh
Confidence 6777788 57777777754
No 127
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=72.96 E-value=3.7 Score=41.25 Aligned_cols=38 Identities=32% Similarity=0.814 Sum_probs=31.5
Q ss_pred eeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEc--------eeeeeccCceEEE
Q 010831 240 RICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS--------EYCRKCSGEGRIR 292 (499)
Q Consensus 240 ~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~--------~~C~~C~G~G~v~ 292 (499)
..|..|+|.+. .+|..|+|.-++.. ..|..|+=.|.++
T Consensus 230 ~~C~~CGg~rF---------------lpC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLvr 275 (281)
T KOG2824|consen 230 GVCESCGGARF---------------LPCSNCHGSCKVHEEEEDDGGVLRCLECNENGLVR 275 (281)
T ss_pred CcCCCcCCcce---------------EecCCCCCceeeeeeccCCCcEEECcccCCCCcee
Confidence 47999999875 47999999999886 3999999888764
No 128
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=71.97 E-value=2.2 Score=50.30 Aligned_cols=21 Identities=14% Similarity=0.159 Sum_probs=12.8
Q ss_pred EEEcCC-CCCHHHHHHHHHHHh
Q 010831 412 KVTIPN-RISAKERELLEELAS 432 (499)
Q Consensus 412 ~V~~P~-~Ls~~q~~lL~~l~~ 432 (499)
-++=|. .|+...++.|.++..
T Consensus 854 ILDEPtsgLD~~~~~~L~~~L~ 875 (924)
T TIGR00630 854 ILDEPTTGLHFDDIKKLLEVLQ 875 (924)
T ss_pred EEECCCCCCCHHHHHHHHHHHH
Confidence 455665 488777666655543
No 129
>TIGR00340 zpr1_rel ZPR1-related zinc finger protein. A model ZPR1_znf (TIGR00310) has been created to describe the domain shared by this protein and ZPR1.
Probab=71.08 E-value=22 Score=33.28 Aligned_cols=25 Identities=12% Similarity=0.464 Sum_probs=18.1
Q ss_pred EEEEeccCCeEeEEeCCCC-CCCcEEEecc
Q 010831 364 VVKVKTVEGISELQVPPGT-QPGDVLVLAK 392 (499)
Q Consensus 364 ~~~I~tldG~~~l~ip~gt-q~g~~~~l~G 392 (499)
++.||-| .++||||+ +.|.+=+|.|
T Consensus 73 ~i~IPEl----~lei~pg~~~~G~iTTVEG 98 (163)
T TIGR00340 73 TIRIPEL----GIKIEPGPASQGYISNIEG 98 (163)
T ss_pred EEEccce----eEEecCCCcCCceEEehHh
Confidence 5666654 48899997 7888777854
No 130
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=70.86 E-value=15 Score=29.79 Aligned_cols=47 Identities=17% Similarity=0.155 Sum_probs=35.5
Q ss_pred cCcCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHH
Q 010831 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKE 121 (499)
Q Consensus 75 ~~~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~~~~~~~f~~ 121 (499)
|++|--.+.|+.+.||++||..|-.+.++|..=-..+.....+.|..
T Consensus 1 MCRnI~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps~an~eaF~~ 47 (78)
T PF10041_consen 1 MCRNIKTLRNFEPPATDEEIRAAALQYVRKVSGFRKPSAANAEAFDR 47 (78)
T ss_pred CCcchhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCcchhhHHHHHH
Confidence 45667778899999999999999999999976555544444455553
No 131
>PRK04023 DNA polymerase II large subunit; Validated
Probab=70.13 E-value=2.3 Score=49.58 Aligned_cols=65 Identities=29% Similarity=0.594 Sum_probs=41.7
Q ss_pred ccccccc-ceeeeeecceeeecccccCcccccCcceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeee
Q 010831 205 EFSESIF-GAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCR 283 (499)
Q Consensus 205 tl~ea~~-G~~k~i~v~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~ 283 (499)
++.+|+. +...++++. ...|+.|.-.+ ....|+.|+..-.. ...|+.|+-... ...|+
T Consensus 609 ~i~~A~~~~g~~eVEVg-~RfCpsCG~~t-----~~frCP~CG~~Te~-------------i~fCP~CG~~~~--~y~CP 667 (1121)
T PRK04023 609 DINKAAKYKGTIEVEIG-RRKCPSCGKET-----FYRRCPFCGTHTEP-------------VYRCPRCGIEVE--EDECE 667 (1121)
T ss_pred cHHHHHhcCCceeeccc-CccCCCCCCcC-----CcccCCCCCCCCCc-------------ceeCccccCcCC--CCcCC
Confidence 3567776 555555554 35799997654 34689999876211 146999954432 36799
Q ss_pred eccCceE
Q 010831 284 KCSGEGR 290 (499)
Q Consensus 284 ~C~G~G~ 290 (499)
+|.-+-.
T Consensus 668 KCG~El~ 674 (1121)
T PRK04023 668 KCGREPT 674 (1121)
T ss_pred CCCCCCC
Confidence 9976553
No 132
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=67.03 E-value=25 Score=32.81 Aligned_cols=36 Identities=28% Similarity=0.599 Sum_probs=21.1
Q ss_pred eccCCCCcceEE-EEeeCC-ccce-eeeeeCCCCCCCCE
Q 010831 241 ICSTCGGRGQVM-RTDQTP-FGLF-SQVSVCPSCGGEGE 276 (499)
Q Consensus 241 ~C~~C~G~G~v~-~~~~~~-~g~~-~~~~~C~~C~G~G~ 276 (499)
.|+.|+..|... .....| |+-+ .+...|+.|+=+-.
T Consensus 2 ~Cp~C~~~~~~~~~~~~IP~F~evii~sf~C~~CGyk~~ 40 (160)
T smart00709 2 DCPSCGGNGTTRMLLTSIPYFREVIIMSFECEHCGYRNN 40 (160)
T ss_pred cCCCCCCCCEEEEEEecCCCcceEEEEEEECCCCCCccc
Confidence 477777777532 222333 4443 34578999987644
No 133
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=66.59 E-value=2.3 Score=50.14 Aligned_cols=27 Identities=30% Similarity=0.676 Sum_probs=20.9
Q ss_pred eCCCCCCCCEEEc---------eeeeeccCceEEEe
Q 010831 267 VCPSCGGEGEVIS---------EYCRKCSGEGRIRL 293 (499)
Q Consensus 267 ~C~~C~G~G~~i~---------~~C~~C~G~G~v~~ 293 (499)
.|+.|.|.|.+.. .+|..|+|..+..+
T Consensus 738 ~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e 773 (924)
T TIGR00630 738 RCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYNRE 773 (924)
T ss_pred CCCCCccceEEEEEccCCCCcccCCCCcCCceeChH
Confidence 4999999998763 48999998876544
No 134
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=64.07 E-value=33 Score=31.94 Aligned_cols=25 Identities=20% Similarity=0.563 Sum_probs=19.1
Q ss_pred EEEEeccCCeEeEEeCCCCCCCcEEEecc
Q 010831 364 VVKVKTVEGISELQVPPGTQPGDVLVLAK 392 (499)
Q Consensus 364 ~~~I~tldG~~~l~ip~gtq~g~~~~l~G 392 (499)
++.||-| .++||||++-|.+-.|.|
T Consensus 76 ~i~IPEl----~~ei~pg~~~g~itTVEG 100 (160)
T smart00709 76 TISIPEL----DLEIPPGPLGGFITTVEG 100 (160)
T ss_pred EEEeeee----eEEecCCCCCcEEEehHH
Confidence 5666643 588999998898888865
No 135
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=63.29 E-value=7.5 Score=40.06 Aligned_cols=9 Identities=33% Similarity=0.892 Sum_probs=5.0
Q ss_pred eecccccCc
Q 010831 223 ETCEVCTGT 231 (499)
Q Consensus 223 ~~C~~C~Gs 231 (499)
-.||.|.+.
T Consensus 188 ~~CPvCGs~ 196 (309)
T PRK03564 188 QFCPVCGSM 196 (309)
T ss_pred CCCCCCCCc
Confidence 456666543
No 136
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=62.60 E-value=4.2 Score=48.16 Aligned_cols=21 Identities=14% Similarity=0.151 Sum_probs=13.9
Q ss_pred EEEcCC-CCCHHHHHHHHHHHh
Q 010831 412 KVTIPN-RISAKERELLEELAS 432 (499)
Q Consensus 412 ~V~~P~-~Ls~~q~~lL~~l~~ 432 (499)
-++=|. .|+.+.++.|.+++.
T Consensus 856 ILDEPtsGLD~~~~~~L~~~L~ 877 (943)
T PRK00349 856 ILDEPTTGLHFEDIRKLLEVLH 877 (943)
T ss_pred EEECCCCCCCHHHHHHHHHHHH
Confidence 466775 488877766665554
No 137
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=61.91 E-value=2.6 Score=48.40 Aligned_cols=51 Identities=31% Similarity=0.679 Sum_probs=0.0
Q ss_pred eecccccCcccccCcceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeeccCceEEEe
Q 010831 223 ETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRL 293 (499)
Q Consensus 223 ~~C~~C~GsG~~~g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~ 293 (499)
..|+.|.-.. -...|+.|+..-..+ -.|+.|+-. +..+.|++|..+.....
T Consensus 656 r~Cp~Cg~~t-----~~~~Cp~CG~~T~~~-------------~~Cp~C~~~--~~~~~C~~C~~~~~~~~ 706 (900)
T PF03833_consen 656 RRCPKCGKET-----FYNRCPECGSHTEPV-------------YVCPDCGIE--VEEDECPKCGRETTSYS 706 (900)
T ss_dssp -----------------------------------------------------------------------
T ss_pred ccCcccCCcc-----hhhcCcccCCccccc-------------eeccccccc--cCccccccccccCcccc
Confidence 5788886543 346899998654322 479999874 34579999987754433
No 138
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=61.48 E-value=10 Score=34.87 Aligned_cols=37 Identities=30% Similarity=0.872 Sum_probs=28.3
Q ss_pred eeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEc-e--------eeeeccCceEE
Q 010831 240 RICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS-E--------YCRKCSGEGRI 291 (499)
Q Consensus 240 ~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~-~--------~C~~C~G~G~v 291 (499)
..|..|+|.+. .+|..|+|.-++.. + .|+.|+=.|.+
T Consensus 100 ~~C~~Cgg~rf---------------v~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl~ 145 (147)
T cd03031 100 GVCEGCGGARF---------------VPCSECNGSCKVFAENATAAGGFLRCPECNENGLV 145 (147)
T ss_pred CCCCCCCCcCe---------------EECCCCCCcceEEeccCcccccEEECCCCCccccc
Confidence 46999999875 47999999988763 2 78888866644
No 139
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=59.58 E-value=6.1 Score=45.35 Aligned_cols=52 Identities=25% Similarity=0.563 Sum_probs=37.2
Q ss_pred ceeeecccccCcccccCcceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeeccCc
Q 010831 220 SHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGE 288 (499)
Q Consensus 220 ~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~ 288 (499)
.....|..|.- ...|+.|...=. .+. ....-.|..|+-. ..+...|+.|.+.
T Consensus 433 s~~l~C~~Cg~--------v~~Cp~Cd~~lt-~H~-------~~~~L~CH~Cg~~-~~~p~~Cp~Cgs~ 484 (730)
T COG1198 433 APLLLCRDCGY--------IAECPNCDSPLT-LHK-------ATGQLRCHYCGYQ-EPIPQSCPECGSE 484 (730)
T ss_pred cceeecccCCC--------cccCCCCCcceE-Eec-------CCCeeEeCCCCCC-CCCCCCCCCCCCC
Confidence 45788999963 578999987522 221 1123679999988 6678999999876
No 140
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=59.49 E-value=5.9 Score=46.92 Aligned_cols=27 Identities=30% Similarity=0.667 Sum_probs=20.7
Q ss_pred eCCCCCCCCEEEc---------eeeeeccCceEEEe
Q 010831 267 VCPSCGGEGEVIS---------EYCRKCSGEGRIRL 293 (499)
Q Consensus 267 ~C~~C~G~G~~i~---------~~C~~C~G~G~v~~ 293 (499)
.|+.|.|.|.+.. .+|..|+|.....+
T Consensus 740 ~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e 775 (943)
T PRK00349 740 RCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRYNRE 775 (943)
T ss_pred CCCcccccceEEEEeccCCCccccCccccCcccccc
Confidence 4899999988763 38999998876544
No 141
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=58.64 E-value=15 Score=27.50 Aligned_cols=37 Identities=32% Similarity=0.746 Sum_probs=17.7
Q ss_pred eeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEE
Q 010831 240 RICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEV 277 (499)
Q Consensus 240 ~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~ 277 (499)
..||-|+|....++......+..- ...|..|+..|..
T Consensus 2 kPCPfCGg~~~~~~~~~~~~~~~~-~~~C~~Cga~~~~ 38 (53)
T TIGR03655 2 KPCPFCGGADVYLRRGFDPLDLSH-YFECSTCGASGPV 38 (53)
T ss_pred CCCCCCCCcceeeEeccCCCCCEE-EEECCCCCCCccc
Confidence 357888887764431111111111 1257777666543
No 142
>PRK05978 hypothetical protein; Provisional
Probab=56.61 E-value=4.9 Score=36.99 Aligned_cols=26 Identities=35% Similarity=1.041 Sum_probs=14.6
Q ss_pred eccCCCCcceEEEEeeCCccceeeeeeCCCCCC
Q 010831 241 ICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGG 273 (499)
Q Consensus 241 ~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G 273 (499)
.||.| |.|...+ |++.+...|+.|+-
T Consensus 35 rCP~C-G~G~LF~------g~Lkv~~~C~~CG~ 60 (148)
T PRK05978 35 RCPAC-GEGKLFR------AFLKPVDHCAACGE 60 (148)
T ss_pred cCCCC-CCCcccc------cccccCCCccccCC
Confidence 46666 4554432 45555566666653
No 143
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=53.04 E-value=36 Score=29.93 Aligned_cols=10 Identities=20% Similarity=0.507 Sum_probs=5.5
Q ss_pred ceeeeccccc
Q 010831 220 SHLETCEVCT 229 (499)
Q Consensus 220 ~~~~~C~~C~ 229 (499)
+....|..|.
T Consensus 69 p~~~~C~~Cg 78 (117)
T PRK00564 69 KVELECKDCS 78 (117)
T ss_pred CCEEEhhhCC
Confidence 4445566665
No 144
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=52.95 E-value=7.7 Score=48.79 Aligned_cols=24 Identities=4% Similarity=-0.042 Sum_probs=15.0
Q ss_pred CcEEEEEEEEcCCC-CCHHHHHHHHHHH
Q 010831 405 GDHLFTVKVTIPNR-ISAKERELLEELA 431 (499)
Q Consensus 405 GDL~V~~~V~~P~~-Ls~~q~~lL~~l~ 431 (499)
+.|| -.+-|+. |..+..+.|-+++
T Consensus 1721 ~~ly---ilDEPt~GLh~~d~~~Ll~~l 1745 (1809)
T PRK00635 1721 PTLF---LLDEIATSLDNQQKSALLVQL 1745 (1809)
T ss_pred CcEE---EEcCCCCCCCHHHHHHHHHHH
Confidence 3555 4677864 8877766655554
No 145
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=51.93 E-value=3.9 Score=34.74 Aligned_cols=37 Identities=27% Similarity=0.609 Sum_probs=19.0
Q ss_pred eccCCCCcceEEEEeeCCcc-ceeeeeeCCCCCCCCEE
Q 010831 241 ICSTCGGRGQVMRTDQTPFG-LFSQVSVCPSCGGEGEV 277 (499)
Q Consensus 241 ~C~~C~G~G~v~~~~~~~~g-~~~~~~~C~~C~G~G~~ 277 (499)
.|..|+|.|.++-..++-.. .|.-...|..|+|.|..
T Consensus 7 ~c~~c~g~g~al~~~~s~~~~G~pvfk~c~rcgg~G~s 44 (95)
T PF03589_consen 7 SCRRCAGDGAALDMKQSKAQFGVPVFKDCERCGGRGYS 44 (95)
T ss_pred CcCccCCcceeccHHHhHhccCCchhhhhhhhcCCCCC
Confidence 45666666655433322222 12223567777777764
No 146
>PRK14873 primosome assembly protein PriA; Provisional
Probab=51.37 E-value=12 Score=42.57 Aligned_cols=50 Identities=20% Similarity=0.491 Sum_probs=34.6
Q ss_pred eeeecccccCcccccCcceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeeccCc
Q 010831 221 HLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGE 288 (499)
Q Consensus 221 ~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~ 288 (499)
....|..|. ....|+.|.+.=...+ . ...-.|..|+-.- +...|+.|.+.
T Consensus 382 p~l~C~~Cg--------~~~~C~~C~~~L~~h~-~-------~~~l~Ch~CG~~~--~p~~Cp~Cgs~ 431 (665)
T PRK14873 382 PSLACARCR--------TPARCRHCTGPLGLPS-A-------GGTPRCRWCGRAA--PDWRCPRCGSD 431 (665)
T ss_pred CeeEhhhCc--------CeeECCCCCCceeEec-C-------CCeeECCCCcCCC--cCccCCCCcCC
Confidence 467899996 3578999997533211 0 1125799999753 58899999765
No 147
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=50.65 E-value=15 Score=37.74 Aligned_cols=17 Identities=18% Similarity=0.071 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHhCCCCC
Q 010831 94 IKAAYRKLARQYHPDVN 110 (499)
Q Consensus 94 Ik~ayrkla~~~HPD~~ 110 (499)
-++...+|...+.|..+
T Consensus 100 w~~~l~~LL~~l~~~~~ 116 (305)
T TIGR01562 100 WLPWLDALLAGYPAPAN 116 (305)
T ss_pred HHHHHHHHHHHhccccc
Confidence 35566666666666643
No 148
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=49.53 E-value=9 Score=33.37 Aligned_cols=26 Identities=23% Similarity=0.600 Sum_probs=16.1
Q ss_pred eeeecccccCcccccCcceeeccCCC
Q 010831 221 HLETCEVCTGTGAKMGSKMRICSTCG 246 (499)
Q Consensus 221 ~~~~C~~C~GsG~~~g~~~~~C~~C~ 246 (499)
...+|+.|.-.-.-.+..+.+||.|+
T Consensus 8 tKR~Cp~CG~kFYDLnk~PivCP~CG 33 (108)
T PF09538_consen 8 TKRTCPSCGAKFYDLNKDPIVCPKCG 33 (108)
T ss_pred CcccCCCCcchhccCCCCCccCCCCC
Confidence 34567777655555555667777774
No 149
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=48.80 E-value=13 Score=43.04 Aligned_cols=33 Identities=33% Similarity=0.762 Sum_probs=24.1
Q ss_pred eeCCCCCCCCEEEce---------eeeeccCceEEEeeeeEEEE
Q 010831 266 SVCPSCGGEGEVISE---------YCRKCSGEGRIRLKKNIKVK 300 (499)
Q Consensus 266 ~~C~~C~G~G~~i~~---------~C~~C~G~G~v~~~k~l~V~ 300 (499)
-.|..|+|.|.+..+ +|..|+|.-+-+ .+|+|+
T Consensus 731 GRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRYn~--EtLev~ 772 (935)
T COG0178 731 GRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRYNR--ETLEVK 772 (935)
T ss_pred cCCccccCCceEEEEeccCCCceeeCCCcCCccccc--ceEEEE
Confidence 369999999987532 899999987654 355544
No 150
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=47.39 E-value=13 Score=42.89 Aligned_cols=35 Identities=23% Similarity=0.488 Sum_probs=24.8
Q ss_pred eeccCCCCcceEEEEeeCCccceeee-eeCCCCCCCCEEE
Q 010831 240 RICSTCGGRGQVMRTDQTPFGLFSQV-SVCPSCGGEGEVI 278 (499)
Q Consensus 240 ~~C~~C~G~G~v~~~~~~~~g~~~~~-~~C~~C~G~G~~i 278 (499)
-.|..|.|.|.+.... .++-.+ .+|+.|+|+-+--
T Consensus 731 GRCe~C~GdG~ikIeM----~FLpdVyv~CevC~GkRYn~ 766 (935)
T COG0178 731 GRCEACQGDGVIKIEM----HFLPDVYVPCEVCHGKRYNR 766 (935)
T ss_pred cCCccccCCceEEEEe----ccCCCceeeCCCcCCccccc
Confidence 5799999999875432 233333 7999999997643
No 151
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=46.03 E-value=13 Score=41.06 Aligned_cols=53 Identities=25% Similarity=0.508 Sum_probs=33.4
Q ss_pred ceeeecccccCcccccCcceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeeccCce
Q 010831 220 SHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEG 289 (499)
Q Consensus 220 ~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G 289 (499)
.....|..|.- ...|+.|.+.=. .+.. ...-.|..|+-+ ..+...|+.|.+.-
T Consensus 211 a~~~~C~~Cg~--------~~~C~~C~~~l~-~h~~-------~~~l~Ch~Cg~~-~~~~~~Cp~C~s~~ 263 (505)
T TIGR00595 211 SKNLLCRSCGY--------ILCCPNCDVSLT-YHKK-------EGKLRCHYCGYQ-EPIPKTCPQCGSED 263 (505)
T ss_pred CCeeEhhhCcC--------ccCCCCCCCceE-EecC-------CCeEEcCCCcCc-CCCCCCCCCCCCCe
Confidence 34568888863 468999987432 2211 112579999743 34567899997653
No 152
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=45.64 E-value=11 Score=42.70 Aligned_cols=48 Identities=29% Similarity=0.637 Sum_probs=31.2
Q ss_pred eecccccCcccccCcceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeeccC
Q 010831 223 ETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSG 287 (499)
Q Consensus 223 ~~C~~C~GsG~~~g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G 287 (499)
..|+.|+-. .....+-|+.|+..-. ...|+.|+-.=..-...|.+|..
T Consensus 2 ~~Cp~Cg~~---n~~~akFC~~CG~~l~--------------~~~Cp~CG~~~~~~~~fC~~CG~ 49 (645)
T PRK14559 2 LICPQCQFE---NPNNNRFCQKCGTSLT--------------HKPCPQCGTEVPVDEAHCPNCGA 49 (645)
T ss_pred CcCCCCCCc---CCCCCccccccCCCCC--------------CCcCCCCCCCCCcccccccccCC
Confidence 468888643 2233467999954321 14699998875555678999954
No 153
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=45.45 E-value=12 Score=20.40 Aligned_cols=13 Identities=54% Similarity=0.871 Sum_probs=10.6
Q ss_pred HHHHHHHHHhhcc
Q 010831 118 KFKEISAAYEVLS 130 (499)
Q Consensus 118 ~f~~i~~AY~vLs 130 (499)
+|.+|..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 5888999998874
No 154
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=44.58 E-value=11 Score=38.23 Aligned_cols=11 Identities=45% Similarity=1.069 Sum_probs=5.9
Q ss_pred CcceeeccCCC
Q 010831 236 GSKMRICSTCG 246 (499)
Q Consensus 236 g~~~~~C~~C~ 246 (499)
|.+...|..|+
T Consensus 194 G~R~L~Cs~C~ 204 (290)
T PF04216_consen 194 GKRYLHCSLCG 204 (290)
T ss_dssp -EEEEEETTT-
T ss_pred ccEEEEcCCCC
Confidence 44566677774
No 155
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=43.10 E-value=8.9 Score=37.95 Aligned_cols=14 Identities=43% Similarity=1.004 Sum_probs=8.2
Q ss_pred eeccCCCCcceEEE
Q 010831 240 RICSTCGGRGQVMR 253 (499)
Q Consensus 240 ~~C~~C~G~G~v~~ 253 (499)
.+||+|+|+|++-+
T Consensus 39 vtCPTCqGtGrIP~ 52 (238)
T PF07092_consen 39 VTCPTCQGTGRIPR 52 (238)
T ss_pred CcCCCCcCCccCCc
Confidence 45666666665543
No 156
>PRK05580 primosome assembly protein PriA; Validated
Probab=42.26 E-value=14 Score=42.15 Aligned_cols=50 Identities=22% Similarity=0.554 Sum_probs=32.8
Q ss_pred eeecccccCcccccCcceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeeccCc
Q 010831 222 LETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGE 288 (499)
Q Consensus 222 ~~~C~~C~GsG~~~g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~ 288 (499)
...|..|.- ...|+.|.+. .+.+.. ...-.|..|+-+ ..+...|+.|.+.
T Consensus 381 ~~~C~~Cg~--------~~~C~~C~~~-l~~h~~-------~~~l~Ch~Cg~~-~~~~~~Cp~Cg~~ 430 (679)
T PRK05580 381 FLLCRDCGW--------VAECPHCDAS-LTLHRF-------QRRLRCHHCGYQ-EPIPKACPECGST 430 (679)
T ss_pred ceEhhhCcC--------ccCCCCCCCc-eeEECC-------CCeEECCCCcCC-CCCCCCCCCCcCC
Confidence 678998863 4689999873 222211 122579999855 3456789999765
No 157
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=41.38 E-value=44 Score=29.24 Aligned_cols=45 Identities=22% Similarity=0.405 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCC-cc----hHHHHHHHHHHHhhcch
Q 010831 87 KSASGKEIKAAYRKLARQYHPDVNKE-PG----ATEKFKEISAAYEVLSD 131 (499)
Q Consensus 87 ~~as~~eIk~ayrkla~~~HPD~~~~-~~----~~~~f~~i~~AY~vLsd 131 (499)
+..+..+++.|.|.+-++.|||.... |. .++-++.++.-.+.|..
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~ 53 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKK 53 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhc
Confidence 45677899999999999999997542 22 23446666665555553
No 158
>PF07151 DUF1391: Protein of unknown function (DUF1391); InterPro: IPR009821 This family consists of several Enterobacterial proteins of around 50 residues in length. Members of this family are found in Escherichia coli and Salmonella typhi where they are often known as YdfA. The function of this family is unknown.
Probab=40.23 E-value=14 Score=26.72 Aligned_cols=13 Identities=38% Similarity=0.797 Sum_probs=9.6
Q ss_pred cchhhhhhhhhcC
Q 010831 487 VANGALKWLKENL 499 (499)
Q Consensus 487 ~~~~~~~~~~~~~ 499 (499)
--+||++||..|.
T Consensus 36 te~garrwl~r~~ 48 (49)
T PF07151_consen 36 TESGARRWLARNT 48 (49)
T ss_pred cchhhhHHHhhcC
Confidence 3578999998763
No 159
>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZPR1-type zinc finger domains. An orthologous protein found once in each of the completed archaeal genomes corresponds to a zinc finger-containing domain repeated as the N-terminal and C-terminal halves of the mouse protein ZPR1. ZPR1 is an experimentally proven zinc-binding protein that binds the tyrosine kinase domain of the epidermal growth factor receptor (EGFR); binding is inhibited by EGF stimulation and tyrosine phosphorylation, and activation by EGF is followed by some redistribution of ZPR1 to the nucleus. By analogy, other proteins with the ZPR1 zinc finger domain may be regulatory proteins that sense protein phosphorylation state and/or participate in signal transduction (see also IPR004470 from INTERPRO). Deficiencies in ZPR1 may contribute to neurodegenerative disorders. ZPR1 appears to be down-regulated in patients with spinal muscular atrophy (SMA), a disease characterised by degeneration of the alpha-motor neurons in the spinal cord that can arise from mutations affecting the expression of Survival Motor Neurons (SMN) []. ZPR1 interacts with complexes formed by SMN [], and may act as a modifier that effects the severity of SMA. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2QKD_A.
Probab=39.42 E-value=44 Score=31.09 Aligned_cols=25 Identities=16% Similarity=0.376 Sum_probs=15.1
Q ss_pred EEEEeccCCeEeEEe-CCCCCCCcEEEecc
Q 010831 364 VVKVKTVEGISELQV-PPGTQPGDVLVLAK 392 (499)
Q Consensus 364 ~~~I~tldG~~~l~i-p~gtq~g~~~~l~G 392 (499)
++.||-| .+.| |.+++.|.+-+|.|
T Consensus 77 ti~IPEl----~~ei~P~~~~~g~iTTVEG 102 (161)
T PF03367_consen 77 TIEIPEL----GLEIEPGPSQGGFITTVEG 102 (161)
T ss_dssp EEEEGGG----TEEE--TTTT-SEEEEHHH
T ss_pred EEEEeec----ceEEccCCCCCceEEehHH
Confidence 5667654 4677 55677777777755
No 160
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=39.07 E-value=59 Score=28.37 Aligned_cols=8 Identities=63% Similarity=1.589 Sum_probs=4.1
Q ss_pred CCCCCCCC
Q 010831 268 CPSCGGEG 275 (499)
Q Consensus 268 C~~C~G~G 275 (499)
||.|++..
T Consensus 89 CP~Cgs~~ 96 (113)
T PRK12380 89 CPHCHGER 96 (113)
T ss_pred CcCCCCCC
Confidence 55555444
No 161
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=38.97 E-value=11 Score=47.40 Aligned_cols=27 Identities=33% Similarity=0.562 Sum_probs=21.1
Q ss_pred eCCCCCCCCEEEce---------eeeeccCceEEEe
Q 010831 267 VCPSCGGEGEVISE---------YCRKCSGEGRIRL 293 (499)
Q Consensus 267 ~C~~C~G~G~~i~~---------~C~~C~G~G~v~~ 293 (499)
.|+.|.|.|.+..+ +|..|+|..+..+
T Consensus 1609 rC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e 1644 (1809)
T PRK00635 1609 QCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPL 1644 (1809)
T ss_pred CCCCCccCceEEEecccCCCcccCCCCCCCcCCCHH
Confidence 59999999987532 8999999887543
No 162
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=38.46 E-value=17 Score=32.53 Aligned_cols=27 Identities=7% Similarity=0.100 Sum_probs=17.1
Q ss_pred eeeecccccCcccccCcceeeccCCCC
Q 010831 221 HLETCEVCTGTGAKMGSKMRICSTCGG 247 (499)
Q Consensus 221 ~~~~C~~C~GsG~~~g~~~~~C~~C~G 247 (499)
...+|+.|.-.-.-.+..+.+||.|+-
T Consensus 8 tKr~Cp~cg~kFYDLnk~p~vcP~cg~ 34 (129)
T TIGR02300 8 TKRICPNTGSKFYDLNRRPAVSPYTGE 34 (129)
T ss_pred ccccCCCcCccccccCCCCccCCCcCC
Confidence 345677776555555556777777753
No 163
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=37.33 E-value=44 Score=26.83 Aligned_cols=50 Identities=28% Similarity=0.773 Sum_probs=23.2
Q ss_pred ecccccCcccccCcceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEc------eeeeeccC
Q 010831 224 TCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS------EYCRKCSG 287 (499)
Q Consensus 224 ~C~~C~GsG~~~g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~------~~C~~C~G 287 (499)
.||.|+.. .......-.|..|+.. |.....||.|+-.=++.+ --|..|+|
T Consensus 3 ~CP~C~~~-L~~~~~~~~C~~C~~~-------------~~~~a~CPdC~~~Le~LkACGAvdYFC~~c~g 58 (70)
T PF07191_consen 3 TCPKCQQE-LEWQGGHYHCEACQKD-------------YKKEAFCPDCGQPLEVLKACGAVDYFCNHCHG 58 (70)
T ss_dssp B-SSS-SB-EEEETTEEEETTT--E-------------EEEEEE-TTT-SB-EEEEETTEEEEE-TTTT-
T ss_pred cCCCCCCc-cEEeCCEEECcccccc-------------ceecccCCCcccHHHHHHHhcccceeeccCCc
Confidence 57777655 2222245677777642 334467888887766553 25665554
No 164
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=37.24 E-value=2e+02 Score=27.70 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=18.7
Q ss_pred EEEEeccCCeEeEEeCCC-CCCCcEEEecc
Q 010831 364 VVKVKTVEGISELQVPPG-TQPGDVLVLAK 392 (499)
Q Consensus 364 ~~~I~tldG~~~l~ip~g-tq~g~~~~l~G 392 (499)
++.||-| .++|||| ++-|.+-.|.|
T Consensus 75 ti~IPEl----~lei~pg~~~~G~iTTVEG 100 (192)
T TIGR00310 75 TIRIPEL----GLDIEPGPTSGGFITNLEG 100 (192)
T ss_pred EEEccce----EEEECCCccCCceEEeeHh
Confidence 4566543 5889999 68999999954
No 165
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=37.14 E-value=1.5e+02 Score=28.57 Aligned_cols=13 Identities=31% Similarity=0.682 Sum_probs=7.9
Q ss_pred eeCCCCCCCCEEE
Q 010831 266 SVCPSCGGEGEVI 278 (499)
Q Consensus 266 ~~C~~C~G~G~~i 278 (499)
..|..|+....+-
T Consensus 120 l~C~aCGa~~~v~ 132 (201)
T PRK12336 120 LRCDACGAHRPVK 132 (201)
T ss_pred EEcccCCCCcccc
Confidence 4577776666543
No 166
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=36.63 E-value=52 Score=25.52 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=23.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhhcCC
Q 010831 410 TVKVTIPNRISAKERELLEELASLRNT 436 (499)
Q Consensus 410 ~~~V~~P~~Ls~~q~~lL~~l~~~~~~ 436 (499)
..+..||..||+.||..+-.++.-.+=
T Consensus 17 ~~eL~Fp~~ls~~eRriih~la~~lGL 43 (60)
T cd02639 17 RDELAFPSSLSPAERRIVHLLASRLGL 43 (60)
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHcCC
Confidence 578899999999999999999986653
No 167
>KOG2724 consensus Nuclear pore complex component NPAP60L/NUP50 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.31 E-value=33 Score=36.61 Aligned_cols=83 Identities=19% Similarity=0.189 Sum_probs=57.3
Q ss_pred EEEEEEEEeccccccCCcceEEEeeeCHHhhhCCCEEEEeccCCeEeEEeCCCCCCCcEEE--eccCCCCCCCCCCCCCc
Q 010831 329 LYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLV--LAKKGAPKLNKPSIRGD 406 (499)
Q Consensus 329 L~V~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~I~tldG~~~l~ip~gtq~g~~~~--l~G~GmP~~~~~~~rGD 406 (499)
+|++.+|++++.|.-.+--+++...=.+.+-=.|.-.--++.++...|-|+..|+-|.++. |-.+|||-.+. +..++
T Consensus 371 kve~~ev~edda~ysKkckvfykKdKEf~dkGvgtl~lkp~~~~k~qlLvradtnlGnilLN~Ll~kgMkctr~-gknnv 449 (487)
T KOG2724|consen 371 KVETVEVQEDDAVYSKKCKVFYKKDKEFTDKGVGTLHLKPNDRGKFQLLVRADTNLGNILLNSLLNKGMKCTRV-GKNNV 449 (487)
T ss_pred eeEeecccCccchhccccceEEEecccccccccceeecccccccceeeeehhccchhHHHHHHhhcCCCcceec-cCCce
Confidence 5777777777776666666666665566665555333223445777899999999998875 77999998654 35678
Q ss_pred EEEEEE
Q 010831 407 HLFTVK 412 (499)
Q Consensus 407 L~V~~~ 412 (499)
|||.+-
T Consensus 450 lIvcvp 455 (487)
T KOG2724|consen 450 LIVCVP 455 (487)
T ss_pred EEEEeC
Confidence 877653
No 168
>PF08774 VRR_NUC: VRR-NUC domain; InterPro: IPR014883 This entry contains proteins with the VRR-NUC domain. It is associated with members of the PD-(D/E)XK nuclease superfamily, which include the type III restriction modification enzymes, for example StyLTI: (P40815 from SWISSPROT).; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=36.18 E-value=50 Score=27.62 Aligned_cols=42 Identities=29% Similarity=0.496 Sum_probs=30.0
Q ss_pred cCCCCCCCCCCCCC--cEEEEEEEEcC-CCCCHHHHHHHHHHHhh
Q 010831 392 KKGAPKLNKPSIRG--DHLFTVKVTIP-NRISAKERELLEELASL 433 (499)
Q Consensus 392 G~GmP~~~~~~~rG--DL~V~~~V~~P-~~Ls~~q~~lL~~l~~~ 433 (499)
..|+|.+--....| +.+.-|+|+.| .+|+++|++-|+.|.+.
T Consensus 45 ~~G~PDl~~~~~~~~~~~~~~iEvK~p~~~ls~~Q~~~~~~l~~~ 89 (100)
T PF08774_consen 45 RSGFPDLILWRPRGKRDIFLFIEVKGPGDRLSPNQKEWIDKLREA 89 (100)
T ss_pred CCCCCcEEEEecCCCccEEEEEEEcCCCCCcCHHHHHHHHHHHHC
Confidence 36677653221223 35778889999 47999999999999875
No 169
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=35.96 E-value=44 Score=29.75 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=15.5
Q ss_pred eeEEEEeCCCCCCCCEEEEcc
Q 010831 295 KNIKVKVPPGVSTGSILRVVG 315 (499)
Q Consensus 295 k~l~V~IP~Gv~~G~~Irl~G 315 (499)
..+++.-+.+++.||.+.+.-
T Consensus 42 ~~~~~~~~~~~~~GD~V~v~i 62 (135)
T PF04246_consen 42 ITFRAPNPIGAKVGDRVEVEI 62 (135)
T ss_pred EEEEecCCCCCCCCCEEEEEe
Confidence 556666777888888887754
No 170
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=35.24 E-value=15 Score=36.37 Aligned_cols=15 Identities=40% Similarity=1.055 Sum_probs=11.7
Q ss_pred eeCCCCCCCCEEEce
Q 010831 266 SVCPSCGGEGEVISE 280 (499)
Q Consensus 266 ~~C~~C~G~G~~i~~ 280 (499)
.+||+|+|+|++..+
T Consensus 39 vtCPTCqGtGrIP~e 53 (238)
T PF07092_consen 39 VTCPTCQGTGRIPRE 53 (238)
T ss_pred CcCCCCcCCccCCcc
Confidence 579999999987643
No 171
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=35.17 E-value=33 Score=31.50 Aligned_cols=39 Identities=23% Similarity=0.658 Sum_probs=20.7
Q ss_pred cccccCcceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEE
Q 010831 231 TGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEV 277 (499)
Q Consensus 231 sG~~~g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~ 277 (499)
+|-..|.-.-+|..|+-.=..... ....+|+.|+++-+.
T Consensus 104 sGE~~g~G~l~C~~Cg~~~~~~~~--------~~l~~Cp~C~~~~F~ 142 (146)
T PF07295_consen 104 SGEVVGPGTLVCENCGHEVELTHP--------ERLPPCPKCGHTEFT 142 (146)
T ss_pred cCcEecCceEecccCCCEEEecCC--------CcCCCCCCCCCCeee
Confidence 455555556778888543222111 112567777776654
No 172
>PRK14051 negative regulator GrlR; Provisional
Probab=33.64 E-value=1.2e+02 Score=26.35 Aligned_cols=70 Identities=17% Similarity=0.090 Sum_probs=43.0
Q ss_pred ccEEEEEEEEeccccccCCcceEEEeeeC--HHhhhCCCEEEEeccCCeEeEEeCCCCCCCcEEEeccCCCCC
Q 010831 327 GDLYVYLDVEEIPGIQRDGIDLFSTISIS--YLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPK 397 (499)
Q Consensus 327 GDL~V~i~v~~h~~f~R~G~DL~~~~~Is--l~eAllG~~~~I~tldG~~~l~ip~gtq~g~~~~l~G~GmP~ 397 (499)
-||++.++-..|+..+.=+-+--+.+.|+ +.+.-.|.++. -++.|..+|.|....+-=..+.|++-|||.
T Consensus 48 ~~iilhvhR~n~ei~SVf~~eqdy~L~i~kk~~sn~~~~~l~-~HV~~Nekl~vdv~akFI~~LvI~~~~~~~ 119 (123)
T PRK14051 48 EDIILHVHRYNYEIPSVLNIEQDYQLVIPKKVLSNDNNLTLH-CHVRGNEKLFVDVYAKFIEPLVIKNTGMPQ 119 (123)
T ss_pred ceeEEEEEecccccccccCccccEEEecchhheeCCCCeEEE-EEEcCCcEEEEEEeeeeeeeeEEccCCCcc
Confidence 56777776665554443333333455566 44433344333 266777677777666666789999999995
No 173
>PF10365 DUF2436: Domain of unknown function (DUF2436); InterPro: IPR018832 Gingipains R and K are endopeptidases with specificity for arginyl and lysyl bonds, respectively. Like other cysteine peptidases, they require reducing conditions for activity. They are maximally active at approximately neutral pH. Gingipains R and K are secreted by the bacterium Porphyromonas gingivalis (Bacteroides gingivalis). The bacterium is a major pathogen in periodontal disease, and the many ways in which the activities of the gingipains may contribute to the disease processes have been reviewed []. These enzymes are also involved in the hemagglutinating activity of the organisms. This entry represents a central region found in gingipain K peptidases, active on lysyl bonds; they belong to the MEROPS peptidase family C25 (gingipain family, clan CD).
Probab=32.05 E-value=66 Score=29.33 Aligned_cols=36 Identities=39% Similarity=0.778 Sum_probs=27.0
Q ss_pred cCCeEeEEeCCCC--------CCCcEEEeccCCCCCCCCCCCCCcEEE
Q 010831 370 VEGISELQVPPGT--------QPGDVLVLAKKGAPKLNKPSIRGDHLF 409 (499)
Q Consensus 370 ldG~~~l~ip~gt--------q~g~~~~l~G~GmP~~~~~~~rGDL~V 409 (499)
+||...|+||.|+ |++.++-|.|.|=+. + .|+|=||
T Consensus 96 ~dG~~~i~IPaG~YDy~I~~P~~~~kiwIaGd~g~~---~-tr~dDy~ 139 (161)
T PF10365_consen 96 VDGEASIDIPAGTYDYCIAAPQPGGKIWIAGDGGDG---P-TRGDDYV 139 (161)
T ss_pred ecCceEEEecCceeEEEEecCCCCCeEEEecCCCCC---C-ccccceE
Confidence 5888788999985 889999999998543 2 3666554
No 174
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=31.78 E-value=1e+02 Score=26.88 Aligned_cols=9 Identities=44% Similarity=1.025 Sum_probs=4.6
Q ss_pred eCCCCCCCC
Q 010831 267 VCPSCGGEG 275 (499)
Q Consensus 267 ~C~~C~G~G 275 (499)
.||.|++..
T Consensus 88 ~CP~Cgs~~ 96 (115)
T TIGR00100 88 RCPKCHGIM 96 (115)
T ss_pred cCcCCcCCC
Confidence 355555544
No 175
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=31.64 E-value=34 Score=24.07 Aligned_cols=8 Identities=88% Similarity=2.075 Sum_probs=4.9
Q ss_pred eeCCCCCC
Q 010831 266 SVCPSCGG 273 (499)
Q Consensus 266 ~~C~~C~G 273 (499)
..|+.|+|
T Consensus 20 d~C~~C~G 27 (41)
T PF13453_consen 20 DVCPSCGG 27 (41)
T ss_pred EECCCCCe
Confidence 45666665
No 176
>PF14353 CpXC: CpXC protein
Probab=31.08 E-value=27 Score=30.84 Aligned_cols=11 Identities=45% Similarity=0.957 Sum_probs=8.4
Q ss_pred eeCCCCCCCCE
Q 010831 266 SVCPSCGGEGE 276 (499)
Q Consensus 266 ~~C~~C~G~G~ 276 (499)
.+|+.|+....
T Consensus 39 ~~CP~Cg~~~~ 49 (128)
T PF14353_consen 39 FTCPSCGHKFR 49 (128)
T ss_pred EECCCCCCcee
Confidence 67888887775
No 177
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=29.81 E-value=54 Score=30.38 Aligned_cols=35 Identities=23% Similarity=0.442 Sum_probs=18.7
Q ss_pred eccCCCCcc-eEEEEeeCCcccee-eeeeCCCCCCCC
Q 010831 241 ICSTCGGRG-QVMRTDQTPFGLFS-QVSVCPSCGGEG 275 (499)
Q Consensus 241 ~C~~C~G~G-~v~~~~~~~~g~~~-~~~~C~~C~G~G 275 (499)
.||.|+..- .++...-+..|... ....|+.|+.+=
T Consensus 2 ~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~f 38 (154)
T PRK00464 2 RCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKRF 38 (154)
T ss_pred cCCCCCCCCCEeEeccccCCCCceeeeeeccccCCcc
Confidence 478887765 44443434444333 235677666553
No 178
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=28.99 E-value=71 Score=27.80 Aligned_cols=13 Identities=15% Similarity=0.255 Sum_probs=5.2
Q ss_pred ceeeecccccCcc
Q 010831 220 SHLETCEVCTGTG 232 (499)
Q Consensus 220 ~~~~~C~~C~GsG 232 (499)
+....|..|.-..
T Consensus 68 p~~~~C~~Cg~~~ 80 (113)
T PF01155_consen 68 PARARCRDCGHEF 80 (113)
T ss_dssp --EEEETTTS-EE
T ss_pred CCcEECCCCCCEE
Confidence 3344566665433
No 179
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=28.88 E-value=33 Score=36.94 Aligned_cols=13 Identities=54% Similarity=1.214 Sum_probs=8.7
Q ss_pred eeCCCCCCCCEEE
Q 010831 266 SVCPSCGGEGEVI 278 (499)
Q Consensus 266 ~~C~~C~G~G~~i 278 (499)
.+|+.|+|+|.+.
T Consensus 391 ~~Cp~C~G~G~v~ 403 (414)
T TIGR00757 391 TVCPHCSGTGIVK 403 (414)
T ss_pred CCCCCCcCeeEEc
Confidence 5677777777654
No 180
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=27.92 E-value=65 Score=28.16 Aligned_cols=10 Identities=30% Similarity=0.557 Sum_probs=5.0
Q ss_pred ceeeeccccc
Q 010831 220 SHLETCEVCT 229 (499)
Q Consensus 220 ~~~~~C~~C~ 229 (499)
+....|..|.
T Consensus 68 p~~~~C~~Cg 77 (114)
T PRK03681 68 EAECWCETCQ 77 (114)
T ss_pred CcEEEcccCC
Confidence 3344555554
No 181
>PF11983 DUF3484: Domain of unknown function (DUF3484); InterPro: IPR021873 FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains []. This C-terminal domain is found in FtsA from Firmicutes (Gram-positive bacteria). It is typically between 65 to 81 amino acids in length.
Probab=27.48 E-value=94 Score=25.08 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=16.1
Q ss_pred CCCCCCCChHHHHHHHhhcc
Q 010831 468 EEPEDQNDPWKKLKDFAGSV 487 (499)
Q Consensus 468 ~~~~~~~~~~~~l~~~~~~~ 487 (499)
++++..+++.+|+|++||+.
T Consensus 52 ~~~e~k~kltdRvR~~fgsm 71 (73)
T PF11983_consen 52 EPSEPKEKLTDRVRGFFGSM 71 (73)
T ss_pred cccccCCcHHHHHHHHHhhh
Confidence 34566779999999999975
No 182
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=27.29 E-value=84 Score=24.75 Aligned_cols=8 Identities=38% Similarity=1.024 Sum_probs=4.5
Q ss_pred eeCCCCCC
Q 010831 266 SVCPSCGG 273 (499)
Q Consensus 266 ~~C~~C~G 273 (499)
..|++|+=
T Consensus 37 v~C~~CGY 44 (64)
T PF09855_consen 37 VSCTNCGY 44 (64)
T ss_pred EECCCCCC
Confidence 45666653
No 183
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=26.58 E-value=1e+03 Score=27.56 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=15.9
Q ss_pred CCCCEEEEcccCCCCCCCCCCccEEEEE
Q 010831 306 STGSILRVVGEGDAGPRGGPPGDLYVYL 333 (499)
Q Consensus 306 ~~G~~Irl~G~G~~~~~gg~~GDL~V~i 333 (499)
.|=|+|++...-+..++|..|-.+-|.+
T Consensus 175 ~d~Q~vkiQE~pe~~p~g~~Prs~~vil 202 (682)
T COG1241 175 IDFQKVKIQELPELVPGGELPRSIEVIL 202 (682)
T ss_pred eeceEEEEecCcccCCCCCCCceEEEEE
Confidence 3556777776665555554555554443
No 184
>PF12991 DUF3875: Domain of unknown function, B. Theta Gene description (DUF3875); InterPro: IPR024451 This domain of unknown function is found in proteins from Bacteroidetes, including the conjugation system ATPase, TraG.
Probab=26.31 E-value=72 Score=24.26 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=17.9
Q ss_pred CCCcEEEEEEEEcCCC--CCHHHHH
Q 010831 403 IRGDHLFTVKVTIPNR--ISAKERE 425 (499)
Q Consensus 403 ~rGDL~V~~~V~~P~~--Ls~~q~~ 425 (499)
..||+.|-|+|.+|+- ||.++-+
T Consensus 26 k~gDiTv~f~v~LPEiFtls~~eYe 50 (54)
T PF12991_consen 26 KNGDITVAFRVELPEIFTLSEAEYE 50 (54)
T ss_pred cCCCEEEEEEecCCeeEEechhHhH
Confidence 3599999999999995 5555444
No 185
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=25.77 E-value=40 Score=38.90 Aligned_cols=41 Identities=24% Similarity=0.612 Sum_probs=28.1
Q ss_pred eeeecccccCcccc-cCcceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCC
Q 010831 221 HLETCEVCTGTGAK-MGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGE 274 (499)
Q Consensus 221 ~~~~C~~C~GsG~~-~g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~ 274 (499)
....|+.|+..=.. .......|+.|+-+..+ ...|+.|+++
T Consensus 443 ~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~-------------p~~Cp~Cgs~ 484 (730)
T COG1198 443 YIAECPNCDSPLTLHKATGQLRCHYCGYQEPI-------------PQSCPECGSE 484 (730)
T ss_pred CcccCCCCCcceEEecCCCeeEeCCCCCCCCC-------------CCCCCCCCCC
Confidence 45679999876443 22346789999755221 1679999998
No 186
>COG5349 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.65 E-value=20 Score=31.83 Aligned_cols=25 Identities=36% Similarity=1.058 Sum_probs=12.6
Q ss_pred eccCCCCcceEEEEeeCCccceeeeeeCCCCC
Q 010831 241 ICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCG 272 (499)
Q Consensus 241 ~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~ 272 (499)
.||.| |.|+.. -|+......|..|+
T Consensus 23 rCP~C-GeGrLF------~gFLK~~p~C~aCG 47 (126)
T COG5349 23 RCPRC-GEGRLF------RGFLKVVPACEACG 47 (126)
T ss_pred CCCCC-CCchhh------hhhcccCchhhhcc
Confidence 46666 455432 24444445555554
No 187
>PRK14873 primosome assembly protein PriA; Provisional
Probab=25.54 E-value=48 Score=37.91 Aligned_cols=42 Identities=26% Similarity=0.561 Sum_probs=28.8
Q ss_pred ceeeecccccCccccc-CcceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCC
Q 010831 220 SHLETCEVCTGTGAKM-GSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEG 275 (499)
Q Consensus 220 ~~~~~C~~C~GsG~~~-g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G 275 (499)
.....|++|++.=... ......|+.|+-.- ....|+.|++.-
T Consensus 390 g~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~--------------~p~~Cp~Cgs~~ 432 (665)
T PRK14873 390 RTPARCRHCTGPLGLPSAGGTPRCRWCGRAA--------------PDWRCPRCGSDR 432 (665)
T ss_pred cCeeECCCCCCceeEecCCCeeECCCCcCCC--------------cCccCCCCcCCc
Confidence 4567899999766543 23467899997421 015799999874
No 188
>KOG1705 consensus Uncharacterized conserved protein, contains CXXC motifs [Function unknown]
Probab=25.41 E-value=18 Score=30.41 Aligned_cols=54 Identities=33% Similarity=0.786 Sum_probs=29.5
Q ss_pred cceeeecccccCcccc------cCcceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeecc
Q 010831 219 LSHLETCEVCTGTGAK------MGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCS 286 (499)
Q Consensus 219 v~~~~~C~~C~GsG~~------~g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~ 286 (499)
+..-..|+.|+|.... +-+....|..|+ +| +++..|--|++-|..-.-.|.+|.
T Consensus 17 i~~G~LCEkCDgkC~ICDS~VRP~tlVRiC~eC~------------~G--s~q~~ciic~~~gV~d~~yc~ect 76 (110)
T KOG1705|consen 17 IAIGRLCEKCDGKCVICDSYVRPCTLVRICDECN------------YG--SYQGRCVICGGVGVSDAYYCKECT 76 (110)
T ss_pred chhhhhHHhcCCcccccccccccceeeeeehhcC------------Cc--cccCceEEecCCcccchHHHHHHH
Confidence 4445678889886532 222344555553 11 122456667776655555666664
No 189
>PRK05580 primosome assembly protein PriA; Validated
Probab=25.27 E-value=42 Score=38.40 Aligned_cols=43 Identities=21% Similarity=0.563 Sum_probs=28.6
Q ss_pred ceeeecccccCcccc-cCcceeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCC
Q 010831 220 SHLETCEVCTGTGAK-MGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEG 275 (499)
Q Consensus 220 ~~~~~C~~C~GsG~~-~g~~~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G 275 (499)
.....|+.|++.=.. .......|+.|+-+-.+ ...|+.|++.-
T Consensus 388 g~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~-------------~~~Cp~Cg~~~ 431 (679)
T PRK05580 388 GWVAECPHCDASLTLHRFQRRLRCHHCGYQEPI-------------PKACPECGSTD 431 (679)
T ss_pred cCccCCCCCCCceeEECCCCeEECCCCcCCCCC-------------CCCCCCCcCCe
Confidence 456789999985332 23346789999754221 15799998873
No 190
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=25.10 E-value=56 Score=22.20 Aligned_cols=14 Identities=50% Similarity=1.144 Sum_probs=8.8
Q ss_pred eeeccCCCCcceEE
Q 010831 239 MRICSTCGGRGQVM 252 (499)
Q Consensus 239 ~~~C~~C~G~G~v~ 252 (499)
...|+.|++.|.+.
T Consensus 3 ~~~C~~C~~~~i~~ 16 (33)
T PF08792_consen 3 LKKCSKCGGNGIVN 16 (33)
T ss_pred ceEcCCCCCCeEEE
Confidence 34677777777553
No 191
>PF01846 FF: FF domain; InterPro: IPR002713 The FF domain may be involved in protein-protein interaction []. It often occurs as multiple copies and often accompanies WW domains IPR001202 from INTERPRO. PRP40 from yeast encodes a novel, essential splicing component that associates with the yeast U1 small nuclear ribonucleoprotein particle [].; PDB: 3HFH_B 2KIS_A 2DOD_A 2JUC_A 2LKS_A 1UZC_A 2KZG_A 2L9V_A 2DOF_A 2KFD_A ....
Probab=24.78 E-value=1.3e+02 Score=21.83 Aligned_cols=42 Identities=12% Similarity=0.534 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCcchHHHHHHHHH------HHhhc--chhhhhhhccc
Q 010831 93 EIKAAYRKLARQYHPDVNKEPGATEKFKEISA------AYEVL--SDDKKRAMYDQ 140 (499)
Q Consensus 93 eIk~ayrkla~~~HPD~~~~~~~~~~f~~i~~------AY~vL--sd~~kR~~YD~ 140 (499)
+.+.+|++|...+. .++.. .|.++.. .|..| ++..++.+|+.
T Consensus 1 ~a~~~F~~lL~e~~--i~~~s----~W~~~~~~l~~dpry~~i~~~~~~R~~lF~e 50 (51)
T PF01846_consen 1 KAREAFKELLKEHK--ITPYS----SWEEVKPKLSKDPRYKAIGDSESERESLFEE 50 (51)
T ss_dssp HHHHHHHHHHHHTT--S-TTS----SHHHHHHHHTTSCHHHHSTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCC--CCCCC----cHHHHHHHHccCHHHHHhcCCHHHHHHHHHh
Confidence 57889999998876 44332 2222222 45555 55555566554
No 192
>PHA01735 hypothetical protein
Probab=24.25 E-value=36 Score=27.15 Aligned_cols=10 Identities=50% Similarity=0.920 Sum_probs=8.5
Q ss_pred hhhhhhhhhc
Q 010831 489 NGALKWLKEN 498 (499)
Q Consensus 489 ~~~~~~~~~~ 498 (499)
+-|.+|||+|
T Consensus 36 ~AA~d~Lk~N 45 (76)
T PHA01735 36 RAACDWLKSN 45 (76)
T ss_pred HHHHHHHHHC
Confidence 4589999998
No 193
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=24.06 E-value=1.5e+02 Score=25.50 Aligned_cols=21 Identities=29% Similarity=0.819 Sum_probs=14.2
Q ss_pred eeCCCCCCCCEEEc---eeeeecc
Q 010831 266 SVCPSCGGEGEVIS---EYCRKCS 286 (499)
Q Consensus 266 ~~C~~C~G~G~~i~---~~C~~C~ 286 (499)
..|.-|+++|+.+. -.|..|.
T Consensus 36 daCeiC~~~GY~q~g~~lvC~~C~ 59 (102)
T PF10080_consen 36 DACEICGPKGYYQEGDQLVCKNCG 59 (102)
T ss_pred EeccccCCCceEEECCEEEEecCC
Confidence 66777777777764 3677774
No 194
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=23.85 E-value=51 Score=22.79 Aligned_cols=7 Identities=57% Similarity=1.630 Sum_probs=3.5
Q ss_pred eeCCCCC
Q 010831 266 SVCPSCG 272 (499)
Q Consensus 266 ~~C~~C~ 272 (499)
..|+.|+
T Consensus 26 vrC~~C~ 32 (37)
T PF13719_consen 26 VRCPKCG 32 (37)
T ss_pred EECCCCC
Confidence 3455554
No 195
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.72 E-value=1.2e+02 Score=27.09 Aligned_cols=54 Identities=19% Similarity=0.161 Sum_probs=37.9
Q ss_pred CcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhh
Q 010831 78 DYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKK 134 (499)
Q Consensus 78 d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~~~~~~~f~~i~~AY~vLsd~~k 134 (499)
.--+||+|+...+.+||.+.|..|-....+.+.. ....=.+|-.|-|-|..+.+
T Consensus 60 Ea~qILnV~~~ln~eei~k~yehLFevNdkskGG---SFYLQSKVfRAkErld~El~ 113 (132)
T KOG3442|consen 60 EAQQILNVKEPLNREEIEKRYEHLFEVNDKSKGG---SFYLQSKVFRAKERLDEELK 113 (132)
T ss_pred HHhhHhCCCCCCCHHHHHHHHHHHHhccCcccCc---ceeehHHHHHHHHHHHHHHH
Confidence 3568999999999999999999999887777653 22222344456665554433
No 196
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=23.65 E-value=12 Score=36.87 Aligned_cols=58 Identities=40% Similarity=0.663 Sum_probs=43.9
Q ss_pred cCcCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhccccccc
Q 010831 75 ASGDYYATLGVPKSASGKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQYGEA 144 (499)
Q Consensus 75 ~~~d~Y~vLgv~~~as~~eIk~ayrkla~~~HPD~~~~~~~~~~f~~i~~AY~vLsd~~kR~~YD~~G~~ 144 (499)
...+||++||+....+.. ++.|+ |.+..+. .+.|..+..+...|.++ +|..||..+..
T Consensus 96 ~~~~~~~~~g~~~~~~~~--~~~~~--------~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 153 (306)
T KOG0714|consen 96 PDKDFYEFFGVSSPFSGS--KKGYR--------DKNAAPG-EEAFKSEGKAFQSLYGP-KRKQYDSSGSD 153 (306)
T ss_pred hhhhHHHHhCCCCCCccc--cccCC--------ccccccC-ccccccccccccccCCC-ccccccccccc
Confidence 367899999988776654 55555 5554444 66777777899999999 99999987744
No 197
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=23.34 E-value=55 Score=28.19 Aligned_cols=23 Identities=26% Similarity=0.801 Sum_probs=10.8
Q ss_pred eecccccCcccccCcceeeccCC
Q 010831 223 ETCEVCTGTGAKMGSKMRICSTC 245 (499)
Q Consensus 223 ~~C~~C~GsG~~~g~~~~~C~~C 245 (499)
..|+-|.+.|....-....|..|
T Consensus 36 daCeiC~~~GY~q~g~~lvC~~C 58 (102)
T PF10080_consen 36 DACEICGPKGYYQEGDQLVCKNC 58 (102)
T ss_pred EeccccCCCceEEECCEEEEecC
Confidence 44555555554433334444444
No 198
>COG5435 Uncharacterized conserved protein [Function unknown]
Probab=23.34 E-value=1.3e+02 Score=27.64 Aligned_cols=32 Identities=19% Similarity=0.379 Sum_probs=29.3
Q ss_pred CCCcEEEEEEEEcCCCCCHHHHHHHHHHHhhc
Q 010831 403 IRGDHLFTVKVTIPNRISAKERELLEELASLR 434 (499)
Q Consensus 403 ~rGDL~V~~~V~~P~~Ls~~q~~lL~~l~~~~ 434 (499)
.+||-.+.|....|..+++.|+.+++++....
T Consensus 108 ~~g~~vLifT~Tt~~~ftp~q~~~~~~~I~Sf 139 (147)
T COG5435 108 ERGDTVLIFTLTTPGEFTPSQKKAWEQVIQSF 139 (147)
T ss_pred ccCCeEEEEEecCCCCCCHHHHHHHHHHHHhc
Confidence 58999999999999999999999999998743
No 199
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=23.27 E-value=1.5e+02 Score=21.97 Aligned_cols=42 Identities=17% Similarity=0.282 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhccc
Q 010831 95 KAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQ 140 (499)
Q Consensus 95 k~ayrkla~~~HPD~~~~~~~~~~f~~i~~AY~vLsd~~kR~~YD~ 140 (499)
.+.+++-.+.-|||.+ ..+..+.+.+.|..|++.++...+|.
T Consensus 12 ~~~~~~~~~~~~~~~~----~~~i~~~~~~~W~~l~~~~k~~y~~~ 53 (66)
T cd00084 12 SQEHRAEVKAENPGLS----VGEISKILGEMWKSLSEEEKKKYEEK 53 (66)
T ss_pred HHHHHHHHHHHCcCCC----HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4556677777888853 56778899999999998877666554
No 200
>PRK11032 hypothetical protein; Provisional
Probab=23.19 E-value=74 Score=29.71 Aligned_cols=16 Identities=19% Similarity=0.372 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhCCC
Q 010831 93 EIKAAYRKLARQYHPD 108 (499)
Q Consensus 93 eIk~ayrkla~~~HPD 108 (499)
.++++|.++.....-.
T Consensus 3 k~~~~Y~~ll~~v~~~ 18 (160)
T PRK11032 3 KVAQYYRELVASLTER 18 (160)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4678888888555443
No 201
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=23.19 E-value=1.1e+02 Score=23.50 Aligned_cols=27 Identities=15% Similarity=0.314 Sum_probs=23.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhhcCC
Q 010831 410 TVKVTIPNRISAKERELLEELASLRNT 436 (499)
Q Consensus 410 ~~~V~~P~~Ls~~q~~lL~~l~~~~~~ 436 (499)
.-..+||..||+.||..+-+++...+=
T Consensus 16 ~~~l~Fpp~ls~~eR~~vH~~a~~~gL 42 (59)
T cd06007 16 NEEYEFPSSLTNHERAVIHRLCRKLGL 42 (59)
T ss_pred ccEEEcCCCCCHHHHHHHHHHHHHcCC
Confidence 457899999999999999999986553
No 202
>smart00276 GLECT Galectin. Galectin - galactose-binding lectin
Probab=22.92 E-value=1.1e+02 Score=26.81 Aligned_cols=42 Identities=19% Similarity=0.314 Sum_probs=30.1
Q ss_pred EEeCCCCCCCcEEEeccCCCCCCCC-----CCCCCcEEEEEEEEcCC
Q 010831 376 LQVPPGTQPGDVLVLAKKGAPKLNK-----PSIRGDHLFTVKVTIPN 417 (499)
Q Consensus 376 l~ip~gtq~g~~~~l~G~GmP~~~~-----~~~rGDL~V~~~V~~P~ 417 (499)
..||.+.++|+.+.|.|.=.+...+ ....+|+.+||++.+++
T Consensus 3 ~~lp~~l~~G~~i~i~G~~~~~~~~F~inl~~~~~di~lH~n~rf~~ 49 (128)
T smart00276 3 LPIPGGLKPGQTLTVRGIVLPDAKRFSINLLTGGDDIALHFNPRFNE 49 (128)
T ss_pred ccCCCCCCCCCEEEEEEEECCCCCEEEEEeecCCCCEEEEEeccCCC
Confidence 4678889999999998875443211 11236999999999974
No 203
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=22.87 E-value=72 Score=28.06 Aligned_cols=19 Identities=58% Similarity=1.300 Sum_probs=0.0
Q ss_pred ccCCCCcceEEEEeeCCccceeeeeeCCCCC
Q 010831 242 CSTCGGRGQVMRTDQTPFGLFSQVSVCPSCG 272 (499)
Q Consensus 242 C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~ 272 (499)
||.|++.=.|.+ -.|+.|+
T Consensus 1 CPvCg~~l~vt~------------l~C~~C~ 19 (113)
T PF09862_consen 1 CPVCGGELVVTR------------LKCPSCG 19 (113)
T ss_pred CCCCCCceEEEE------------EEcCCCC
No 204
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=22.79 E-value=2.9e+02 Score=26.65 Aligned_cols=84 Identities=25% Similarity=0.334 Sum_probs=56.0
Q ss_pred cCCcceEEEeeeCHHhhhCCCEEEEeccCCeEeEEeCCCCCCCcEEEeccCCCCCCCCCCCCCcEEEEEEEEcCC-CCCH
Q 010831 343 RDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPN-RISA 421 (499)
Q Consensus 343 R~G~DL~~~~~Isl~eAllG~~~~I~tldG~~~l~ip~gtq~g~~~~l~G~GmP~~~~~~~rGDL~V~~~V~~P~-~Ls~ 421 (499)
|--.||.+++..+=.|-.-|+++.|....|...|++|+ |+.+-.++.-+-... |..||-=+-.|-- +-. --.+
T Consensus 113 ~lrtdls~tlfl~DPedYdGGeLVv~dtYg~h~VklPA----GdLVlypStSlH~Vt-PVTRg~R~asffW-~qslir~d 186 (229)
T COG3128 113 RLRTDLSCTLFLSDPEDYDGGELVVNDTYGNHRVKLPA----GDLVLYPSTSLHEVT-PVTRGERFASFFW-IQSLIRDD 186 (229)
T ss_pred eeEeeeeeeeecCCccccCCceEEEeccccceEEeccC----CCEEEcccccceecc-ccccCceEEEeee-hHHHhhhh
Confidence 44467777777777788999999999999988999998 666777776664432 4456755433321 111 1245
Q ss_pred HHHHHHHHHHh
Q 010831 422 KERELLEELAS 432 (499)
Q Consensus 422 ~q~~lL~~l~~ 432 (499)
.+|.+|-++-.
T Consensus 187 ~~r~~l~e~d~ 197 (229)
T COG3128 187 KKRALLFELDK 197 (229)
T ss_pred HHHHHHHHHHH
Confidence 67777766643
No 205
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=21.66 E-value=1.6e+02 Score=20.77 Aligned_cols=13 Identities=31% Similarity=0.769 Sum_probs=8.2
Q ss_pred eccCCCCcceEEE
Q 010831 241 ICSTCGGRGQVMR 253 (499)
Q Consensus 241 ~C~~C~G~G~v~~ 253 (499)
.|+.|+....+..
T Consensus 2 ~Cp~C~~~~a~~~ 14 (40)
T smart00440 2 PCPKCGNREATFF 14 (40)
T ss_pred cCCCCCCCeEEEE
Confidence 4777776665543
No 206
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=21.60 E-value=2.4e+02 Score=24.96 Aligned_cols=9 Identities=22% Similarity=0.475 Sum_probs=4.7
Q ss_pred ceeeeccccc
Q 010831 220 SHLETCEVCT 229 (499)
Q Consensus 220 ~~~~~C~~C~ 229 (499)
+....| .|.
T Consensus 68 p~~~~C-~Cg 76 (124)
T PRK00762 68 PVEIEC-ECG 76 (124)
T ss_pred CeeEEe-eCc
Confidence 344556 665
No 207
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=21.21 E-value=1.6e+02 Score=24.85 Aligned_cols=52 Identities=25% Similarity=0.514 Sum_probs=34.2
Q ss_pred CCCCCCC-HHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhcc-cccc
Q 010831 84 GVPKSAS-GKEIKAAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYD-QYGE 143 (499)
Q Consensus 84 gv~~~as-~~eIk~ayrkla~~~HPD~~~~~~~~~~f~~i~~AY~vLsd~~kR~~YD-~~G~ 143 (499)
|++++.. ..+|-+.++.+...+++. ..+.+..+.+.| +.||.-+..|| .++.
T Consensus 51 g~~p~s~evq~l~~~~~~~~~~~~~~------~~~~~~~l~~~y--~~~~~~~~~~~~~~~~ 104 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWMELINQFTGG------DPELLRGLAQMY--VEDPRFAAMYDKKFGP 104 (118)
T ss_dssp T--TT-HHHHHHHHHHHHHHHHSS---------HHHHHHHHHHT--TSTHHHHHHHG-GGST
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhCC------CHHHHHHHHHHH--HcCHHHHhhccccCCH
Confidence 5566543 345777788888777762 346788888888 78899899998 6654
No 208
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=21.07 E-value=1.3e+02 Score=23.02 Aligned_cols=13 Identities=46% Similarity=0.973 Sum_probs=8.6
Q ss_pred eeeeccCceEEEe
Q 010831 281 YCRKCSGEGRIRL 293 (499)
Q Consensus 281 ~C~~C~G~G~v~~ 293 (499)
.|++|.-+-.+..
T Consensus 30 yCpKCK~EtlI~v 42 (55)
T PF14205_consen 30 YCPKCKQETLIDV 42 (55)
T ss_pred cCCCCCceEEEEe
Confidence 7888876665543
No 209
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=21.04 E-value=1.2e+02 Score=23.27 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=22.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhhcCC
Q 010831 411 VKVTIPNRISAKERELLEELASLRNT 436 (499)
Q Consensus 411 ~~V~~P~~Ls~~q~~lL~~l~~~~~~ 436 (499)
-.+.||..||+.||..+-+|++..+=
T Consensus 18 ~~l~F~p~ls~~eR~~vH~lA~~~gL 43 (60)
T cd02641 18 TELEFPPTLSSHDRLLVHELAEELGL 43 (60)
T ss_pred CcEECCCCCCHHHHHHHHHHHHHcCC
Confidence 35789999999999999999986553
No 210
>PF12387 Peptidase_C74: Pestivirus NS2 peptidase; InterPro: IPR022120 The pestivirus NS2 peptidase is responsible for single cleavage between NS2 and NS3 of the Bovine viral diarrhea virus 1 polyprotein, a cleavage that is correlated with cytopathogenicity []. The peptidase is activated by its interaction with 'J-domain protein interacting with viral protein' - Jiv. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0004252 serine-type endopeptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0017111 nucleoside-triphosphatase activity, 0070008 serine-type exopeptidase activity
Probab=20.74 E-value=55 Score=30.77 Aligned_cols=9 Identities=44% Similarity=1.398 Sum_probs=4.3
Q ss_pred ccCCCCcce
Q 010831 242 CSTCGGRGQ 250 (499)
Q Consensus 242 C~~C~G~G~ 250 (499)
||.|+..|.
T Consensus 178 CPKCGr~G~ 186 (200)
T PF12387_consen 178 CPKCGRHGK 186 (200)
T ss_pred CCcccCCCC
Confidence 555544443
No 211
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=20.56 E-value=56 Score=39.68 Aligned_cols=35 Identities=34% Similarity=0.815 Sum_probs=24.3
Q ss_pred eeeccCCCCcceEEEEeeCCccceeeeeeCCCCCCCCEEEceeeeeccCc
Q 010831 239 MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGE 288 (499)
Q Consensus 239 ~~~C~~C~G~G~v~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~ 288 (499)
...||.|+.... ...|+.|+..-.. .-.|+.|..+
T Consensus 667 ~rkCPkCG~~t~--------------~~fCP~CGs~te~-vy~CPsCGae 701 (1337)
T PRK14714 667 RRRCPSCGTETY--------------ENRCPDCGTHTEP-VYVCPDCGAE 701 (1337)
T ss_pred EEECCCCCCccc--------------cccCcccCCcCCC-ceeCccCCCc
Confidence 578999976421 1379999988543 3489999764
No 212
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=20.52 E-value=1.5e+02 Score=20.70 Aligned_cols=15 Identities=27% Similarity=0.532 Sum_probs=7.7
Q ss_pred eccCCCCcceEEEEe
Q 010831 241 ICSTCGGRGQVMRTD 255 (499)
Q Consensus 241 ~C~~C~G~G~v~~~~ 255 (499)
.|+.|+....+....
T Consensus 2 ~Cp~Cg~~~a~~~~~ 16 (39)
T PF01096_consen 2 KCPKCGHNEAVFFQI 16 (39)
T ss_dssp --SSS-SSEEEEEEE
T ss_pred CCcCCCCCeEEEEEe
Confidence 477787777665543
No 213
>PRK11712 ribonuclease G; Provisional
Probab=20.36 E-value=51 Score=36.27 Aligned_cols=26 Identities=19% Similarity=0.437 Sum_probs=12.6
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHhCCC
Q 010831 83 LGVPKSASGKEIKAAYRKLARQYHPD 108 (499)
Q Consensus 83 Lgv~~~as~~eIk~ayrkla~~~HPD 108 (499)
.|||+....++-++..++++..+.|+
T Consensus 139 vgiSrKI~de~~R~rLk~i~~~~~~~ 164 (489)
T PRK11712 139 VGVSQRIESEEERERLKKIVAPYCDE 164 (489)
T ss_pred eeEecCCCChHHHHHHHHHHHhhCCC
Confidence 44555554444445555554444433
No 214
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=20.25 E-value=1.4e+02 Score=23.09 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=23.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhhcCC
Q 010831 410 TVKVTIPNRISAKERELLEELASLRNT 436 (499)
Q Consensus 410 ~~~V~~P~~Ls~~q~~lL~~l~~~~~~ 436 (499)
.-.+.||..||+.+|.++-+++...+=
T Consensus 17 ~~~l~f~p~lt~~eR~~vH~~a~~~gL 43 (60)
T cd02640 17 IRDMVFSPEFSKEERALIHQIAQKYGL 43 (60)
T ss_pred cceEEcCCCCCHHHHHHHHHHHHHcCC
Confidence 357899999999999999999986553
No 215
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=20.24 E-value=1.9e+02 Score=22.58 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=30.9
Q ss_pred HHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcchhhhhhhccc
Q 010831 96 AAYRKLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRAMYDQ 140 (499)
Q Consensus 96 ~ayrkla~~~HPD~~~~~~~~~~f~~i~~AY~vLsd~~kR~~YD~ 140 (499)
+.+|...++-||+.. ..+.-+.|.+.+..|++.++...+|.
T Consensus 14 ~~~r~~~~~~~p~~~----~~eisk~l~~~Wk~ls~~eK~~y~~~ 54 (72)
T cd01388 14 KRHRRKVLQEYPLKE----NRAISKILGDRWKALSNEEKQPYYEE 54 (72)
T ss_pred HHHHHHHHHHCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 445666677788853 45778889999999999888766654
No 216
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=20.11 E-value=76 Score=22.48 Aligned_cols=9 Identities=33% Similarity=1.136 Sum_probs=4.9
Q ss_pred eccCCCCcc
Q 010831 241 ICSTCGGRG 249 (499)
Q Consensus 241 ~C~~C~G~G 249 (499)
+||.|+.+-
T Consensus 2 ~Cp~Cg~~~ 10 (43)
T PF08271_consen 2 KCPNCGSKE 10 (43)
T ss_dssp SBTTTSSSE
T ss_pred CCcCCcCCc
Confidence 366665544
Done!