Query 010832
Match_columns 499
No_of_seqs 217 out of 1895
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 05:04:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010832.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010832hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02286 arginine-tRNA ligase 100.0 7E-110 2E-114 902.6 52.5 455 35-491 23-478 (576)
2 COG0018 ArgS Arginyl-tRNA synt 100.0 5E-109 1E-113 885.4 48.6 462 10-491 2-476 (577)
3 PRK12451 arginyl-tRNA syntheta 100.0 1E-104 3E-109 860.6 49.2 461 10-491 2-467 (562)
4 KOG4426 Arginyl-tRNA synthetas 100.0 3E-102 8E-107 770.9 43.5 488 3-497 65-557 (656)
5 TIGR00456 argS arginyl-tRNA sy 100.0 2.7E-96 6E-101 798.7 50.4 455 12-490 2-465 (566)
6 PRK01611 argS arginyl-tRNA syn 100.0 1.1E-87 2.3E-92 723.5 44.9 399 8-489 2-408 (507)
7 KOG1195 Arginyl-tRNA synthetas 100.0 5.7E-79 1.2E-83 618.1 33.0 431 41-495 33-471 (567)
8 PF00750 tRNA-synt_1d: tRNA sy 100.0 4.9E-76 1.1E-80 605.8 27.2 340 110-460 2-354 (354)
9 cd00671 ArgRS_core catalytic c 100.0 7.9E-54 1.7E-58 411.6 24.6 209 129-397 1-212 (212)
10 COG0215 CysS Cysteinyl-tRNA sy 100.0 7.7E-40 1.7E-44 337.1 19.3 260 121-467 15-315 (464)
11 PLN02946 cysteine-tRNA ligase 100.0 1.9E-39 4.1E-44 345.8 20.7 272 126-488 77-390 (557)
12 PF01406 tRNA-synt_1e: tRNA sy 100.0 1.3E-37 2.8E-42 306.5 16.3 252 125-466 4-298 (300)
13 PRK14536 cysS cysteinyl-tRNA s 100.0 8.9E-37 1.9E-41 322.3 22.9 281 126-483 20-342 (490)
14 PRK14534 cysS cysteinyl-tRNA s 100.0 1.1E-36 2.5E-41 319.9 23.0 264 128-467 20-327 (481)
15 PTZ00399 cysteinyl-tRNA-synthe 100.0 4.2E-36 9.2E-41 328.8 20.7 282 121-489 53-383 (651)
16 PRK00260 cysS cysteinyl-tRNA s 100.0 1.5E-35 3.2E-40 315.4 23.0 251 126-466 20-312 (463)
17 PRK14535 cysS cysteinyl-tRNA s 100.0 2.3E-35 4.9E-40 316.1 23.2 256 126-466 245-554 (699)
18 TIGR00435 cysS cysteinyl-tRNA 100.0 5.3E-35 1.1E-39 310.6 24.2 270 126-483 18-327 (465)
19 PRK12418 cysteinyl-tRNA synthe 100.0 8.1E-35 1.7E-39 299.3 21.7 257 125-466 5-308 (384)
20 TIGR03447 mycothiol_MshC cyste 100.0 1.4E-34 3E-39 298.8 20.0 255 127-466 34-335 (411)
21 KOG2007 Cysteinyl-tRNA synthet 100.0 6.9E-31 1.5E-35 267.3 13.9 258 125-465 51-350 (586)
22 PRK11893 methionyl-tRNA synthe 100.0 1.2E-26 2.7E-31 251.2 24.7 269 128-488 1-369 (511)
23 cd00672 CysRS_core catalytic c 99.9 8.4E-27 1.8E-31 223.4 17.6 195 126-459 17-213 (213)
24 cd00668 Ile_Leu_Val_MetRS_core 99.9 9.2E-26 2E-30 229.5 22.4 255 129-458 1-312 (312)
25 cd00812 LeuRS_core catalytic c 99.9 2.2E-25 4.7E-30 226.7 18.0 242 129-460 1-314 (314)
26 cd00674 LysRS_core_class_I cat 99.9 2.2E-24 4.7E-29 220.2 23.0 258 128-462 19-318 (353)
27 TIGR00398 metG methionyl-tRNA 99.9 5.8E-24 1.3E-28 231.2 24.5 267 131-488 2-397 (530)
28 cd00814 MetRS_core catalytic c 99.9 8.4E-24 1.8E-28 215.6 20.9 240 129-458 1-319 (319)
29 PRK00133 metG methionyl-tRNA s 99.9 6.1E-23 1.3E-27 228.3 25.1 269 128-488 2-400 (673)
30 cd00818 IleRS_core catalytic c 99.9 4.2E-23 9E-28 211.9 21.8 256 129-458 2-338 (338)
31 cd00817 ValRS_core catalytic c 99.9 5.3E-23 1.1E-27 214.5 21.5 136 129-301 2-142 (382)
32 COG0143 MetG Methionyl-tRNA sy 99.9 2.1E-22 4.6E-27 215.4 23.8 117 127-296 4-123 (558)
33 PRK12268 methionyl-tRNA synthe 99.9 3.3E-22 7E-27 218.7 22.9 122 128-302 3-128 (556)
34 TIGR00464 gltX_bact glutamyl-t 99.9 2.1E-22 4.6E-27 214.1 20.3 141 308-468 172-313 (470)
35 PLN02224 methionine-tRNA ligas 99.9 8.8E-22 1.9E-26 214.8 23.3 119 125-296 66-187 (616)
36 PRK12267 methionyl-tRNA synthe 99.9 9.9E-22 2.1E-26 218.2 22.2 268 127-487 3-368 (648)
37 cd00802 class_I_aaRS_core cata 99.9 3.4E-22 7.4E-27 180.3 13.6 143 132-396 1-143 (143)
38 PRK01406 gltX glutamyl-tRNA sy 99.9 1.2E-21 2.7E-26 208.3 16.9 136 308-468 182-322 (476)
39 PRK00750 lysK lysyl-tRNA synth 99.9 8.6E-21 1.9E-25 203.8 23.5 253 130-460 25-321 (510)
40 TIGR00467 lysS_arch lysyl-tRNA 99.8 2E-19 4.3E-24 192.2 22.6 273 128-487 18-332 (515)
41 PRK13208 valS valyl-tRNA synth 99.8 4.7E-19 1E-23 201.0 27.0 129 127-295 37-170 (800)
42 PF09334 tRNA-synt_1g: tRNA sy 99.8 8.3E-20 1.8E-24 190.6 18.7 114 130-296 1-117 (391)
43 PRK14895 gltX glutamyl-tRNA sy 99.8 2.1E-19 4.5E-24 190.2 20.1 244 129-468 4-311 (513)
44 PLN02610 probable methionyl-tR 99.8 1.4E-18 3E-23 195.0 23.2 116 127-295 16-135 (801)
45 TIGR00422 valS valyl-tRNA synt 99.8 2.9E-18 6.3E-23 196.1 25.8 132 126-294 31-167 (861)
46 PRK12558 glutamyl-tRNA synthet 99.8 2.2E-19 4.9E-24 188.0 14.4 197 249-468 50-311 (445)
47 PRK05729 valS valyl-tRNA synth 99.8 9.7E-18 2.1E-22 191.8 26.0 131 127-294 35-170 (874)
48 COG0525 ValS Valyl-tRNA synthe 99.8 3.3E-17 7.2E-22 180.8 26.3 130 128-294 33-167 (877)
49 PF01921 tRNA-synt_1f: tRNA sy 99.7 4.5E-18 9.7E-23 172.2 7.4 262 127-465 22-328 (360)
50 PLN02943 aminoacyl-tRNA ligase 99.7 1.8E-16 3.9E-21 182.0 20.8 132 126-294 86-222 (958)
51 PF03485 Arg_tRNA_synt_N: Argi 99.7 1.3E-17 2.9E-22 136.9 8.4 82 14-101 2-85 (85)
52 PRK12410 glutamylglutaminyl-tR 99.7 1.1E-16 2.5E-21 167.0 17.3 138 308-468 165-305 (433)
53 PLN02627 glutamyl-tRNA synthet 99.7 1.4E-16 3E-21 169.2 17.2 137 308-468 224-365 (535)
54 PRK04156 gltX glutamyl-tRNA sy 99.7 7.5E-17 1.6E-21 173.0 15.0 231 127-467 99-402 (567)
55 cd00808 GluRS_core catalytic c 99.7 1.7E-16 3.7E-21 154.0 15.1 216 135-468 6-234 (239)
56 PRK14900 valS valyl-tRNA synth 99.7 1.7E-15 3.7E-20 175.3 23.5 132 127-294 47-183 (1052)
57 COG1384 LysS Lysyl-tRNA synthe 99.7 8.1E-16 1.8E-20 159.8 17.6 258 128-466 19-324 (521)
58 PRK05743 ileS isoleucyl-tRNA s 99.7 7.7E-15 1.7E-19 168.2 26.4 128 126-294 47-180 (912)
59 cd09287 GluRS_non_core catalyt 99.7 3.5E-16 7.5E-21 151.3 12.8 209 134-467 5-230 (240)
60 PF00749 tRNA-synt_1c: tRNA sy 99.7 2.6E-15 5.7E-20 152.4 18.2 239 135-464 6-313 (314)
61 PF00133 tRNA-synt_1: tRNA syn 99.7 1.2E-15 2.6E-20 168.1 16.8 133 126-294 21-158 (601)
62 cd00418 GlxRS_core catalytic c 99.7 1.1E-15 2.3E-20 147.3 13.3 167 252-468 52-225 (230)
63 KOG0436 Methionyl-tRNA synthet 99.7 1.8E-15 3.9E-20 152.1 15.3 267 126-483 37-409 (578)
64 TIGR00392 ileS isoleucyl-tRNA 99.6 9E-15 1.9E-19 167.6 22.3 133 126-294 34-171 (861)
65 PLN02843 isoleucyl-tRNA synthe 99.6 9.3E-14 2E-18 159.9 25.6 130 126-294 30-164 (974)
66 COG0008 GlnS Glutamyl- and glu 99.6 1.8E-14 3.9E-19 152.1 17.4 138 311-468 184-323 (472)
67 TIGR03838 queuosine_YadB gluta 99.6 2.5E-14 5.4E-19 141.5 13.2 184 136-405 6-242 (272)
68 PRK05710 glutamyl-Q tRNA(Asp) 99.5 1.4E-13 3E-18 137.7 14.4 137 253-404 57-248 (299)
69 PLN03233 putative glutamate-tR 99.5 4.2E-13 9.1E-18 142.7 14.9 228 128-467 10-310 (523)
70 TIGR00463 gltX_arch glutamyl-t 99.4 1.1E-12 2.3E-17 141.1 13.5 241 128-467 92-393 (560)
71 PTZ00402 glutamyl-tRNA synthet 99.4 2.3E-12 5E-17 138.5 15.4 129 308-468 208-353 (601)
72 cd00807 GlnRS_core catalytic c 99.4 2.3E-12 4.9E-17 124.5 11.9 218 134-467 5-228 (238)
73 PRK05347 glutaminyl-tRNA synth 99.4 6.8E-12 1.5E-16 134.0 16.5 118 308-467 189-334 (554)
74 KOG0432 Valyl-tRNA synthetase 99.4 5.2E-11 1.1E-15 129.6 23.1 134 126-295 73-211 (995)
75 PLN02907 glutamate-tRNA ligase 99.4 4.3E-12 9.4E-17 141.0 14.7 239 128-467 212-512 (722)
76 KOG1149 Glutamyl-tRNA syntheta 99.3 2E-11 4.2E-16 123.9 14.1 136 307-468 211-353 (524)
77 cd07956 Anticodon_Ia_Arg Antic 99.3 1.5E-12 3.2E-17 119.3 4.4 54 437-490 2-55 (156)
78 PRK00390 leuS leucyl-tRNA synt 99.2 7.3E-11 1.6E-15 134.0 15.0 120 129-301 33-157 (805)
79 PLN02859 glutamine-tRNA ligase 99.2 8.3E-11 1.8E-15 129.6 14.7 107 321-467 441-564 (788)
80 TIGR00396 leuS_bact leucyl-tRN 99.2 8.8E-11 1.9E-15 133.8 15.4 119 128-299 29-152 (842)
81 PRK14703 glutaminyl-tRNA synth 99.2 2.9E-10 6.2E-15 126.5 18.2 120 309-466 192-336 (771)
82 COG0495 LeuS Leucyl-tRNA synth 99.2 9.9E-11 2.2E-15 130.2 14.3 114 128-294 34-152 (814)
83 TIGR00440 glnS glutaminyl-tRNA 99.2 2E-10 4.4E-15 122.5 16.1 126 322-463 183-325 (522)
84 PTZ00419 valyl-tRNA synthetase 99.2 2.8E-10 6.1E-15 132.3 16.1 133 126-295 58-196 (995)
85 COG0060 IleS Isoleucyl-tRNA sy 99.2 8E-10 1.7E-14 124.2 18.7 131 127-294 48-183 (933)
86 PLN02381 valyl-tRNA synthetase 99.2 2.4E-10 5.2E-15 132.7 14.9 133 126-294 126-263 (1066)
87 TIGR00395 leuS_arch leucyl-tRN 99.2 2.2E-10 4.8E-15 132.1 13.7 139 127-294 24-167 (938)
88 PLN02563 aminoacyl-tRNA ligase 99.2 3.6E-10 7.9E-15 129.5 15.1 117 128-297 110-232 (963)
89 PRK06039 ileS isoleucyl-tRNA s 99.1 1.2E-09 2.6E-14 126.6 15.3 133 126-294 39-176 (975)
90 PTZ00437 glutaminyl-tRNA synth 99.0 2.6E-09 5.6E-14 114.3 14.4 106 321-466 228-349 (574)
91 PTZ00427 isoleucine-tRNA ligas 99.0 2.6E-09 5.6E-14 124.8 15.3 132 127-294 101-237 (1205)
92 PRK13804 ileS isoleucyl-tRNA s 99.0 1.7E-09 3.7E-14 124.9 12.6 131 127-294 53-188 (961)
93 PLN02882 aminoacyl-tRNA ligase 99.0 4.4E-09 9.5E-14 123.1 15.6 132 127-294 37-173 (1159)
94 PLN02959 aminoacyl-tRNA ligase 98.9 8.9E-09 1.9E-13 120.2 13.5 168 127-294 44-239 (1084)
95 KOG0435 Leucyl-tRNA synthetase 98.9 2.8E-09 6.2E-14 113.3 6.6 115 126-294 56-175 (876)
96 PRK13804 ileS isoleucyl-tRNA s 98.6 1.2E-07 2.7E-12 109.7 10.4 92 336-465 582-675 (961)
97 PRK12300 leuS leucyl-tRNA synt 98.6 1.8E-07 3.8E-12 107.9 10.5 123 143-294 1-128 (897)
98 PRK06039 ileS isoleucyl-tRNA s 98.5 1.8E-07 3.8E-12 108.8 8.5 88 342-465 548-638 (975)
99 TIGR00395 leuS_arch leucyl-tRN 98.5 5.7E-07 1.2E-11 104.1 11.1 89 342-466 576-667 (938)
100 PRK12300 leuS leucyl-tRNA synt 98.4 1.2E-06 2.7E-11 100.9 10.8 88 342-466 533-624 (897)
101 TIGR00396 leuS_bact leucyl-tRN 98.3 9.7E-07 2.1E-11 101.0 7.9 92 342-465 523-650 (842)
102 PTZ00427 isoleucine-tRNA ligas 98.3 1.2E-06 2.7E-11 102.8 8.3 87 342-464 676-766 (1205)
103 PLN02882 aminoacyl-tRNA ligase 98.3 1.6E-06 3.5E-11 101.9 8.7 88 342-465 570-661 (1159)
104 KOG1247 Methionyl-tRNA synthet 98.3 6.7E-06 1.5E-10 83.8 11.4 117 125-294 11-131 (567)
105 PLN02381 valyl-tRNA synthetase 98.1 4.3E-06 9.4E-11 97.7 7.4 112 342-464 611-737 (1066)
106 COG0495 LeuS Leucyl-tRNA synth 98.1 3.7E-06 7.9E-11 94.3 5.1 90 342-463 529-623 (814)
107 PLN02959 aminoacyl-tRNA ligase 98.0 9.3E-06 2E-10 95.2 8.1 86 342-463 674-762 (1084)
108 PLN02563 aminoacyl-tRNA ligase 98.0 4.8E-06 1E-10 96.0 5.6 90 342-463 619-767 (963)
109 PTZ00419 valyl-tRNA synthetase 98.0 7.4E-06 1.6E-10 95.8 6.0 113 342-464 541-667 (995)
110 PRK00390 leuS leucyl-tRNA synt 97.9 1.8E-05 4E-10 90.4 7.7 87 342-466 526-617 (805)
111 KOG1147 Glutamyl-tRNA syntheta 97.5 0.00082 1.8E-08 70.9 10.9 31 438-468 469-500 (712)
112 cd00806 TrpRS_core catalytic c 97.5 0.0021 4.5E-08 64.6 13.5 67 336-404 136-205 (280)
113 PRK05912 tyrosyl-tRNA syntheta 97.4 0.00057 1.2E-08 72.2 9.6 59 336-404 187-245 (408)
114 TIGR00233 trpS tryptophanyl-tR 97.4 0.0013 2.8E-08 67.5 11.4 67 336-404 138-206 (328)
115 cd00395 Tyr_Trp_RS_core cataly 97.4 0.0025 5.4E-08 63.8 13.0 64 336-408 152-215 (273)
116 PRK13354 tyrosyl-tRNA syntheta 97.4 0.00085 1.8E-08 70.9 9.7 59 336-404 185-243 (410)
117 PRK12285 tryptophanyl-tRNA syn 97.3 0.0023 5E-08 66.6 12.5 59 342-408 206-269 (368)
118 PTZ00126 tyrosyl-tRNA syntheta 97.3 0.0013 2.9E-08 68.6 10.5 60 336-404 209-271 (383)
119 PRK08560 tyrosyl-tRNA syntheta 97.2 0.0013 2.7E-08 67.7 9.2 64 336-409 167-233 (329)
120 PLN02486 aminoacyl-tRNA ligase 97.2 0.0022 4.8E-08 66.9 10.3 53 344-404 224-279 (383)
121 KOG0433 Isoleucyl-tRNA synthet 97.1 0.0034 7.4E-08 68.7 11.0 116 139-295 66-188 (937)
122 KOG0434 Isoleucyl-tRNA synthet 97.0 0.0024 5.1E-08 69.3 8.6 131 128-294 38-173 (1070)
123 COG0162 TyrS Tyrosyl-tRNA synt 96.8 0.003 6.6E-08 66.1 7.2 51 342-400 183-233 (401)
124 TIGR00234 tyrS tyrosyl-tRNA sy 96.6 0.028 6E-07 58.9 12.9 58 337-404 177-234 (377)
125 KOG0433 Isoleucyl-tRNA synthet 96.5 0.0036 7.8E-08 68.5 5.4 92 342-463 569-662 (937)
126 KOG0437 Leucyl-tRNA synthetase 96.4 0.017 3.7E-07 63.4 9.9 63 126-188 42-104 (1080)
127 PTZ00348 tyrosyl-tRNA syntheta 95.7 0.05 1.1E-06 60.8 9.6 60 336-404 174-236 (682)
128 cd00805 TyrRS_core catalytic c 94.0 0.043 9.4E-07 54.8 3.3 52 342-401 154-205 (269)
129 PRK12556 tryptophanyl-tRNA syn 93.9 0.047 1E-06 56.2 3.4 64 336-404 148-215 (332)
130 COG0180 TrpS Tryptophanyl-tRNA 93.4 0.085 1.8E-06 53.5 4.2 66 336-404 144-212 (314)
131 KOG0434 Isoleucyl-tRNA synthet 92.5 0.052 1.1E-06 59.3 1.2 28 382-409 592-619 (1070)
132 PRK12284 tryptophanyl-tRNA syn 92.4 0.15 3.3E-06 53.8 4.5 65 336-404 147-215 (431)
133 PF00579 tRNA-synt_1b: tRNA sy 92.2 0.13 2.8E-06 51.9 3.6 68 336-409 148-217 (292)
134 PRK12282 tryptophanyl-tRNA syn 89.9 0.2 4.3E-06 51.6 2.4 64 336-404 141-209 (333)
135 PRK00927 tryptophanyl-tRNA syn 89.7 0.34 7.3E-06 50.0 3.9 67 336-404 137-209 (333)
136 KOG0435 Leucyl-tRNA synthetase 89.2 0.22 4.8E-06 54.6 2.1 43 390-461 616-659 (876)
137 KOG1148 Glutaminyl-tRNA synthe 87.3 0.75 1.6E-05 49.8 4.6 61 127-188 246-334 (764)
138 KOG0437 Leucyl-tRNA synthetase 86.7 0.25 5.5E-06 54.7 0.7 26 382-408 702-727 (1080)
139 PRK12283 tryptophanyl-tRNA syn 83.9 0.97 2.1E-05 47.5 3.4 37 134-177 6-43 (398)
140 cd00805 TyrRS_core catalytic c 75.0 2.8 6.1E-05 41.8 3.4 38 134-177 4-42 (269)
141 PF00579 tRNA-synt_1b: tRNA sy 73.6 3.1 6.7E-05 41.9 3.3 44 127-177 3-46 (292)
142 PLN02886 aminoacyl-tRNA ligase 67.5 6.9 0.00015 41.2 4.3 28 336-365 183-210 (389)
143 COG4746 Uncharacterized protei 52.6 42 0.0009 26.7 5.2 71 8-80 1-78 (80)
144 PRK12282 tryptophanyl-tRNA syn 50.3 15 0.00033 37.9 3.3 38 134-177 6-43 (333)
145 PLN02886 aminoacyl-tRNA ligase 49.4 12 0.00025 39.5 2.3 38 134-177 50-87 (389)
146 COG0180 TrpS Tryptophanyl-tRNA 48.4 20 0.00043 36.6 3.8 38 134-176 9-46 (314)
147 PRK12284 tryptophanyl-tRNA syn 44.3 21 0.00046 38.0 3.3 40 134-177 6-45 (431)
148 PRK00927 tryptophanyl-tRNA syn 43.4 15 0.00033 37.8 2.1 39 134-178 5-43 (333)
149 PF00975 Thioesterase: Thioest 40.0 25 0.00053 33.2 2.9 32 145-176 71-102 (229)
150 PRK12556 tryptophanyl-tRNA syn 39.1 22 0.00047 36.7 2.4 40 134-177 7-46 (332)
151 cd01134 V_A-ATPase_A V/A-type 39.0 4.8E+02 0.01 27.3 13.8 129 70-214 171-302 (369)
152 PF08373 RAP: RAP domain; Int 37.8 25 0.00054 25.9 2.0 18 157-174 23-40 (58)
153 PRK12283 tryptophanyl-tRNA syn 36.7 24 0.00052 37.3 2.3 23 382-404 255-277 (398)
154 COG1656 Uncharacterized conser 35.2 28 0.0006 32.0 2.2 21 156-176 17-37 (165)
155 PF01927 Mut7-C: Mut7-C RNAse 33.0 34 0.00074 30.7 2.5 21 156-176 11-31 (147)
156 COG1832 Predicted CoA-binding 32.0 65 0.0014 28.8 3.9 37 126-173 15-51 (140)
157 cd04765 HTH_MlrA-like_sg2 Heli 32.0 1.3E+02 0.0029 25.0 5.7 47 439-497 13-66 (99)
158 cd02156 nt_trans nucleotidyl t 31.6 23 0.00051 29.5 1.1 15 135-150 4-18 (105)
159 PRK05320 rhodanese superfamily 26.7 1.7E+02 0.0036 29.0 6.3 79 67-151 15-94 (257)
160 TIGR01043 ATP_syn_A_arch ATP s 26.5 6.1E+02 0.013 28.3 11.0 82 126-214 283-367 (578)
161 PF09456 RcsC: RcsC Alpha-Beta 26.1 52 0.0011 27.3 2.1 25 148-172 6-30 (92)
162 PF10007 DUF2250: Uncharacteri 25.2 1E+02 0.0023 25.5 3.8 48 277-324 36-83 (92)
163 cd01104 HTH_MlrA-CarA Helix-Tu 24.7 2.5E+02 0.0053 20.9 5.7 16 482-497 50-65 (68)
164 cd01106 HTH_TipAL-Mta Helix-Tu 24.4 1.9E+02 0.0042 24.0 5.4 14 484-497 52-65 (103)
165 cd04763 HTH_MlrA-like Helix-Tu 24.4 2.5E+02 0.0054 21.1 5.7 13 485-497 53-65 (68)
166 KOG2713 Mitochondrial tryptoph 24.1 27 0.00059 35.0 0.2 56 336-398 154-218 (347)
167 PF04028 DUF374: Domain of unk 23.7 73 0.0016 25.3 2.5 20 153-172 21-40 (74)
168 cd04764 HTH_MlrA-like_sg1 Heli 23.7 2.4E+02 0.0051 21.1 5.4 20 478-497 43-64 (67)
169 cd04788 HTH_NolA-AlbR Helix-Tu 23.2 2.3E+02 0.0049 23.3 5.6 13 485-497 53-65 (96)
170 PRK04192 V-type ATP synthase s 22.5 7.1E+02 0.015 27.9 10.6 82 126-214 288-372 (586)
171 cd04777 HTH_MerR-like_sg1 Heli 21.5 2.5E+02 0.0054 23.4 5.6 50 438-497 12-63 (107)
172 KOG4368 Predicted RNA binding 21.1 64 0.0014 35.3 2.2 73 102-181 102-174 (757)
173 PF03464 eRF1_2: eRF1 domain 2 20.0 3.2E+02 0.007 23.8 6.2 28 69-96 56-84 (133)
No 1
>PLN02286 arginine-tRNA ligase
Probab=100.00 E-value=7.4e-110 Score=902.55 Aligned_cols=455 Identities=82% Similarity=1.310 Sum_probs=419.5
Q ss_pred cccccc-CCCCcccccchHHHHHHhhcCCCCCCCChHHHHHHHHHhCCCCCCeeeEEEecCCeEEEEeChhHHHHHHHHH
Q 010832 35 PLIAAC-TAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKM 113 (499)
Q Consensus 35 ~~v~~~-~~~~gd~~~~~a~~lak~~~~~~~~~~~p~~iA~~i~~~l~~~~~~~~v~vag~GfiN~~l~~~~~~~~~~~~ 113 (499)
..+++| +++|||||||+||.|||.++++++..++|++||++|++.|...+.|++|+++|||||||+|++.++.+.+..+
T Consensus 23 ~~i~~~~~~~~GD~a~n~a~~lak~~~~~~~~~k~P~~iA~~i~~~l~~~~~i~~v~vagpGfiNf~l~~~~l~~~l~~~ 102 (576)
T PLN02286 23 PLVAACTNPKFGDYQCNNAMGLWSKLKGKGTSFKNPRAVAQAIVKNLPASEMIESTSVAGPGFVNVRLSASWLAKRIERM 102 (576)
T ss_pred eEEecCCCCCCCCcccchHHHHHHHhCccccccCCHHHHHHHHHHhCccccceeeEEEcCCCeEEEEECHHHHHHHHHHH
Confidence 445544 7899999999999999999988888899999999999999776779999999999999999999999999988
Q ss_pred HHcCCCCCCCcCCCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCC
Q 010832 114 LVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFP 193 (499)
Q Consensus 114 ~~~~~~~~~~~~~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~ 193 (499)
+..+..++.+...+++|+||||||||||||||||+||++|||+|||+|+++||+|+++|||||||+||++++.++...+|
T Consensus 103 ~~~~~~~g~~~~~~~~v~VEfsSpNp~kplHvGHlRsaiiGdsLaril~~~G~~V~r~nyinD~G~Qi~~l~~~~~~~~~ 182 (576)
T PLN02286 103 LVDGIDTWAPTLPVKRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWGTQFGMLIEHLFEKFP 182 (576)
T ss_pred HHcCcccCCCCCCCceEEEEecCCCCCCCCccccccchhhHHHHHHHHHHcCCceEEEEeecchHHHHHHHHHHHHHhcC
Confidence 87765544343456899999999999999999999999999999999999999999999999999999999988866677
Q ss_pred CCCccccchHHHHHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeeccc
Q 010832 194 NSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGES 273 (499)
Q Consensus 194 ~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~~es 273 (499)
+...+.+.++.++..+|+++++.++.+|++.+++++.+.+||+||+++..+|++++++++..|+++|++|||+||..+||
T Consensus 183 ~~~~~~~~~i~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~lw~~~~~~~~~~~~~~y~~l~V~fd~~ges 262 (576)
T PLN02286 183 NWESVSDQAIGDLQEFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYRAAWAKICEISRREFEKVYQRLRVELEEKGES 262 (576)
T ss_pred cccccCcccHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecCch
Confidence 64434567899998899999999999999999999999999999999999999999999999999999999999877889
Q ss_pred cccCcHHHHHHHHHHCCCeEeecCeEEEEecCCCCCeEEEcCCCcccccchhHHHHHHHHhhcCCCeEEEEecCCccccH
Q 010832 274 FYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHF 353 (499)
Q Consensus 274 ~~~~~v~~~i~~L~~~g~~y~~dGa~~~~~~g~~~d~vl~ksDG~~~Y~t~DiA~~~~k~~~~~~d~~i~V~g~~q~~hf 353 (499)
+|.+.+.++++.|+++|++|++||++|+++++.+.++||+||||++||+|+|||||.||++.+++|++|||||++|+.||
T Consensus 263 ~y~~~~~~vi~~L~~~g~~~e~dGa~~v~l~~~~~~~vl~ksDGt~tY~t~DIA~~~~k~~~~~~d~~IyVvg~~q~~hf 342 (576)
T PLN02286 263 FYNPYIPGVIEELESKGLVVESDGARVIFVEGFDIPLIVVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQQHF 342 (576)
T ss_pred hhhhhHHHHHHHHHHCCCEEeeCCceEeeccCCCCceEEEECCCchhhHHHHHHHHHHHHhccCCCEEEEEEeCcHHHHH
Confidence 99988999999999999999999999998876657899999999999999999999999987799999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHH
Q 010832 354 DMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQ 433 (499)
Q Consensus 354 ~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~ 433 (499)
+|++++++++|+.++ +++.++.|+.||||++.+|+|||||+|++|+|+||++++.++|++.+.++++.+++++++.++
T Consensus 343 ~~v~~~l~~lG~~~~--~~~~~l~h~~~g~V~~~~g~kmStR~G~~v~L~dlldea~~~a~~~~~~~~~~~~~~~~~~~~ 420 (576)
T PLN02286 343 DMVFKAAKRAGWLPE--DTYPRLEHVGFGLVLGEDGKRFRTRSGEVVRLVDLLDEAKSRSKAALIERGKDSEWTPEELEQ 420 (576)
T ss_pred HHHHHHHHHcCCCcc--ccCCceEEEeeccEECCCCCcccCCCCCeeEHHHHHHHHHHHHHHHHHhccCccccchhhHHH
Confidence 999999999998410 124579999999998788989999999999999999999999999999987667799999999
Q ss_pred HHHHhhhhHHHHHhhcCCCCCCccccHHHHhcccCCchhHHHHHHHHHHHHHHHhCCC
Q 010832 434 TAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKD 491 (499)
Q Consensus 434 ~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~n~~~YlqYa~aR~~silrk~~~~ 491 (499)
+|+.+|++|+||++|++++.++++|||+++++++|||+|||||||||+||||||++.+
T Consensus 421 ~a~~vg~~Airy~~L~~~~~~~~~Fd~d~~l~~~g~t~pYlQYahAR~~SIlrKa~~~ 478 (576)
T PLN02286 421 AAEAVGYGAVKYADLKNNRLTNYTFSFDQMLDLKGNTAVYLLYAHARICSIIRKSGKD 478 (576)
T ss_pred HHHHhhhhhhhhhhhhcCCCCCCccCHHHHHhhcCCChHHHHHHHHHHHHHHHhccCc
Confidence 9999999999999999999999999999999999999999999999999999999753
No 2
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.8e-109 Score=885.44 Aligned_cols=462 Identities=36% Similarity=0.582 Sum_probs=409.9
Q ss_pred hHHHHHHHHHHHHHHhhC-CCCCCCccccccc-CCCCcccccchHHHHHHhhcCCCCCCCChHHHHHHHHHhCCCCCCee
Q 010832 10 NVKRELEKVFDLALKATV-PNETDVRPLIAAC-TAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIE 87 (499)
Q Consensus 10 ~~~~~~~~~l~~~l~~~~-~~~~~~~~~v~~~-~~~~gd~~~~~a~~lak~~~~~~~~~~~p~~iA~~i~~~l~~~~~~~ 87 (499)
++++++++.|.++|.+.. . .....+.+++| +++|||||||+||.|||.++ +||++||++|+++|+..+.++
T Consensus 2 ~i~~~l~~~i~~~l~~~~~~-~~~~~~~ve~~~~~~~GD~a~n~a~~laK~~~------~~P~eiA~~i~~~l~~~~~~~ 74 (577)
T COG0018 2 NIKQLLKEKIAEALSAAGLD-VEEIEILVEPPKDPEHGDFATNIAFQLAKKLG------KNPREIAEEIAEKLDTDEIIE 74 (577)
T ss_pred CHHHHHHHHHHHHHHHhhcc-ccccccceecCCCCCcccccchHHHHHhhhcC------CCHHHHHHHHHHhccccCcEe
Confidence 466667777777776653 2 12234556655 78999999999999999999 999999999999998877899
Q ss_pred eEEEecCCeEEEEeChhHHHHHHHHHHHcCCC-C-CCCcCCCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCC
Q 010832 88 SCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIE-T-WAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSN 165 (499)
Q Consensus 88 ~v~vag~GfiN~~l~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G 165 (499)
+|+++|||||||++++.++.+.+.+++.++.. + ....++|++|+||||||||||||||||+||+||||+|||+|+++|
T Consensus 75 ~veiaGpgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaNptkplHiGHlR~aiiGDsLaril~~~G 154 (577)
T COG0018 75 KVEIAGPGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLG 154 (577)
T ss_pred EEEEcCCCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCCCCCCcccchhhhhHHHHHHHHHHHHcC
Confidence 99999999999999999999999999987444 3 334567899999999999999999999999999999999999999
Q ss_pred CeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHHHHHHHHHhcccCCChHHH-HHHHHHHHHhccCChHHHHH
Q 010832 166 VEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFK-ERAQQAVVRLQSGEPKYHEA 244 (499)
Q Consensus 166 ~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~-~~a~~~~~~~e~gd~~~~~~ 244 (499)
|+|+|+|||||||+||++|+.++.....+.......++..+.+.|+++++.++.+|+.. .++++.+.++|.||+++ .+
T Consensus 155 y~V~r~~yvnD~G~Q~~~l~~~~~~~~~e~~~~~~~~~~~lg~~y~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~-~l 233 (577)
T COG0018 155 YDVTRENYVNDWGTQIGMLALSYEKRGREALGLTPEPDGYLGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEA-EL 233 (577)
T ss_pred CCeeEEeeECcHHHHHHHHHHHHHHhccccccCCCCcchHHHHHHHHHHHHHHhCcccchHHHHHHHHHHhcCChHH-HH
Confidence 99999999999999999999887665443210122456677788999888887777533 78999999999999999 99
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeee-e--eccccccCcHHHHHHHHHHCCCeEeecCeEEEEec-----CCCCCeEEEcCC
Q 010832 245 WAQICEISRKEFDKVYKRLRVDLE-E--KGESFYNPYIPGVIDELSKQGLVEESQGARVIFIE-----GVNIPLIIVKSD 316 (499)
Q Consensus 245 w~~~~~~~~~~~~~~~~~LgI~fd-~--~~es~~~~~v~~~i~~L~~~g~~y~~dGa~~~~~~-----g~~~d~vl~ksD 316 (499)
|+++++.++.+++++|++|||+|| | ++|++|++.+.++++.|+++|++|+++||+|++.. |+++|+||+|||
T Consensus 234 w~~~v~~~l~~~k~~l~~l~V~fD~~~~E~e~~~~~~~~~vv~~L~~~~~~~e~~GA~~vdl~~~~~~gd~~~~vl~KSD 313 (577)
T COG0018 234 WRKFVDLSLEGIKETLDRLGVKFDVYDSEGESFYNGKVEKVVEDLEEKGLLYEDDGALVVDLLKFKKFGDDKDRVLQKSD 313 (577)
T ss_pred HHHHHHHHHHHHHHHHHHhCcccceeeccchhhhcccHHHHHHHHHhcCCEeeeCCeEEEehhhhhhcCCCCCeEEEEcC
Confidence 999999999999999999999996 4 57789999999999999999999999999988774 778899999999
Q ss_pred CcccccchhHHHHHHHHhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCcccccc
Q 010832 317 GGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRF 396 (499)
Q Consensus 317 G~~~Y~t~DiA~~~~k~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~ 396 (499)
||++|+|||||||.||++ ++||++|||||++|+.||+|++.+++.+||.+ ....+.|++||++++.+|+|||||.
T Consensus 314 Gt~lY~t~DIAy~~~K~~-~~~d~~IyV~gadq~~~~~ql~~~l~~~g~~~----~~~~~~h~~~~l~~~~~g~kmStR~ 388 (577)
T COG0018 314 GTYLYFTRDIAYHLYKFE-RGFDKLIYVLGADQHGHFKQLKAVLELLGYGP----DKEVLLHQGVGLVRGGEGVKMSTRA 388 (577)
T ss_pred CCeeeehhHHHHHHHHHh-cCCCEEEEEeCCcchhHHHHHHHHHHHhcCCC----ccceEEEEEEeeeECCCCccccccC
Confidence 999999999999999995 99999999999999999999999999999953 1257999999999998999999999
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcccCCchhHHHH
Q 010832 397 SEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLY 476 (499)
Q Consensus 397 G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~n~~~YlqY 476 (499)
|++|+|+|+++++.++|.+.+.++ +..+ +++|+.||++||||++|+++++++++|||+++++|+|||+|||||
T Consensus 389 G~~vtl~dllde~~era~~~~~~~-~~~~------~~iA~~vgi~Avry~~l~~~~~~~~~Fd~d~~lsfegNt~pYvQY 461 (577)
T COG0018 389 GNVVTLDDLLDEAGERAPEEMEEK-EEKN------EEIAEVVGIDAVRYADLSRSRDKDYVFDWDKALSFEGNTAPYVQY 461 (577)
T ss_pred CceEEHHHHHHHHHHHhhhHhhhh-hhhh------HHHHHHhhhhhHHHHHHhcCCCCCcEeeHHHHHhccCCCchhHHH
Confidence 999999999999999999999876 3322 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCC
Q 010832 477 AHARICSIIRKSGKD 491 (499)
Q Consensus 477 a~aR~~silrk~~~~ 491 (499)
|||||||||||++.+
T Consensus 462 A~ARi~SIlrka~e~ 476 (577)
T COG0018 462 AHARICSILRKAGED 476 (577)
T ss_pred HHHHHHHHHHhcccc
Confidence 999999999999753
No 3
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.4e-104 Score=860.62 Aligned_cols=461 Identities=34% Similarity=0.545 Sum_probs=407.0
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCCCccccccc-CCCCcccccchHHHHHHhhcCCCCCCCChHHHHHHHHHhCCCCCCeee
Q 010832 10 NVKRELEKVFDLALKATVPNETDVRPLIAAC-TAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIES 88 (499)
Q Consensus 10 ~~~~~~~~~l~~~l~~~~~~~~~~~~~v~~~-~~~~gd~~~~~a~~lak~~~~~~~~~~~p~~iA~~i~~~l~~~~~~~~ 88 (499)
.+++.++++|.+++....+. ....+.+++| +++||||||| +|.|||.++ ++|++||++|++.|..+ .|++
T Consensus 2 ~~~~~i~~~l~~~l~~~~~~-~~~~~~i~~~~~~~~GD~~~~-~~~lak~~~------~~P~~iA~~i~~~l~~~-~i~~ 72 (562)
T PRK12451 2 DYKTQFAESLSNIFTNELTQ-QQILDLIETPKQDEFGDAAFP-CFSLAKQYK------KAPAIIAKEVAEKLSDP-FFTK 72 (562)
T ss_pred hHHHHHHHHHHHHHHhhccc-cccceeeecCCCCCCCcccch-HHHHHHHcC------CCHHHHHHHHHHhcccc-ccce
Confidence 35667777787777654321 1112345544 7899999999 699999999 99999999999999653 5899
Q ss_pred EEEecCCeEEEEeChhHHHHHHH-HHHHcCCCCCCC-cCCCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCC
Q 010832 89 CSVAGPGFVNVVLSKNWMAKNIQ-KMLVDGIETWAP-KLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNV 166 (499)
Q Consensus 89 v~vag~GfiN~~l~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~ 166 (499)
|+++|| ||||+|++.++...+. .++..+..++.. .+++++|+||||||||||||||||+||++|||+|||+|+++||
T Consensus 73 ve~~g~-fiN~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~vE~sSpNp~kplHvGH~R~aiiGd~l~ril~~~G~ 151 (562)
T PRK12451 73 VEAVGP-YVNVFFNRETVSDAVLKTILAEKEEYGQNHFGCEKTVVIDYSSPNIAKPFSMGHLRSTMIGNALKHIAEKCGY 151 (562)
T ss_pred eEeeCC-EEEEEECHHHHHHHHHHHHHhhHhhcCCCccCCCCEEEEEecCCCCCCCcccchhhhHHHHHHHHHHHHHCCC
Confidence 999996 9999999999977754 666655543332 2457899999999999999999999999999999999999999
Q ss_pred eEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHHHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHH
Q 010832 167 EVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWA 246 (499)
Q Consensus 167 ~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~ 246 (499)
+|+++|||||||+||++++.++ .++++.....+.++.++..+|.++++.++.+|++.+++++.+.++|+||+++.++|+
T Consensus 152 ~V~r~nyinD~G~Q~~~l~~~~-~~~~~~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~ 230 (562)
T PRK12451 152 EVVGINYIGDWGTQFGKLITAY-KKWGNEAVVKEDPIRELFKLYVQFHEEVKDDEELEEEGRAWFKKLEEGDEEAVELWN 230 (562)
T ss_pred CeEEEeeecCchHHHHHHHHHH-HHhCCccccccCchHHHHHHHHHHHHhhccChhHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 9999999999999999999776 445543223456889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCeeee-eccccccCcHHHHHHHHHHCCCeEeecCeEEEEecCCC-CCeEEEcCCCcccccch
Q 010832 247 QICEISRKEFDKVYKRLRVDLEE-KGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVN-IPLIIVKSDGGFNYAST 324 (499)
Q Consensus 247 ~~~~~~~~~~~~~~~~LgI~fd~-~~es~~~~~v~~~i~~L~~~g~~y~~dGa~~~~~~g~~-~d~vl~ksDG~~~Y~t~ 324 (499)
.+++++++.|+++|++|||+||+ .+||+|.+.+++++++|+++|++|++|||+|+++++.+ +|+||+||||++||+|+
T Consensus 231 ~~~~~~l~~~~~~~~~l~V~fD~~~~es~~~~~~~~v~~~L~~~g~~~e~dGa~~~~~~~~g~~~~vl~ksDGt~~Y~t~ 310 (562)
T PRK12451 231 WFRHESLKEFSRIYELLGVEFTNFQGEAFYNDLMEDFIGILEEHDLLEESEGALVVNLEEEGMPPCLIRKSDGATIYATR 310 (562)
T ss_pred HHHHHHHHHHHHHHHHcCCCceeecchHhhhhhHHHHHHHHHHCCCEEecCCeEEEEecccCCCceEEEeCCCccccchh
Confidence 99999999999999999999986 47899988899999999999999999999999987432 68999999999999999
Q ss_pred hHHHHHHHHhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccHHH
Q 010832 325 DLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 404 (499)
Q Consensus 325 DiA~~~~k~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~d 404 (499)
|||||.||++.+++|++|||||++|+.||+|++++++++||. ++.++.|+.||+|.+ +|+|||||+|++|+|+|
T Consensus 311 DiA~~~~k~~~~~~d~~IyV~g~dq~~h~~~l~~~~~~lg~~-----~~~~l~h~~~g~V~~-~g~kmStR~G~~v~l~d 384 (562)
T PRK12451 311 DLTAALYRQNTFGFDKALYVVGPEQSLHFNQFFTVLKKLGYT-----WVDGMEHVPFGLILK-DGKKMSTRKGRVVLLEE 384 (562)
T ss_pred HHHHHHHHhhccCCCEEEEEeCCcHHHHHHHHHHHHHHcCCC-----cccCeEEEeeeeEec-CCCCCcCCCCCeeEHHH
Confidence 999999999878999999999999999999999999999984 346899999999985 67799999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcccCCchhHHHHHHHHHHHH
Q 010832 405 LLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSI 484 (499)
Q Consensus 405 ll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~n~~~YlqYa~aR~~si 484 (499)
|++++..+|.+.+.+|++. + ++.+++|+.+|++|+||++|++++.++++|||+++++++|||+|||||||||||||
T Consensus 385 Lldea~~~a~~~~~~~~~~--l--~~~~~~a~~vg~~Airy~~l~~~~~~~~~Fd~d~~l~~~g~t~pYiQYa~AR~~SI 460 (562)
T PRK12451 385 VLEEAIELAKQNIEEKNPN--L--KQKEEVAKQVGVGAVIFHDLKNERMHNIEFSLENMLKFEGETGPYVQYTHARACSI 460 (562)
T ss_pred HHHHHHHHHHHHHHhhccc--c--ccHHHHHHHhccceeeeHHhhcCCCCCceECHHHHhCcCCCccHHHHHHHHHHHHH
Confidence 9999999999999988553 4 34778999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCC
Q 010832 485 IRKSGKD 491 (499)
Q Consensus 485 lrk~~~~ 491 (499)
|||++.+
T Consensus 461 lrka~~~ 467 (562)
T PRK12451 461 LRKESVE 467 (562)
T ss_pred HHhcCCC
Confidence 9999754
No 4
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.5e-102 Score=770.92 Aligned_cols=488 Identities=63% Similarity=1.055 Sum_probs=460.9
Q ss_pred cccchhHhHHHHHHHHHHHHHHhhCCCCCCCcccccc-cCCCCcccccchHHHHHHhhcCCCCCCCChHHHHHHHHHhCC
Q 010832 3 TEEENTGNVKRELEKVFDLALKATVPNETDVRPLIAA-CTAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLP 81 (499)
Q Consensus 3 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~v~~-~~~~~gd~~~~~a~~lak~~~~~~~~~~~p~~iA~~i~~~l~ 81 (499)
.+++.|.+|+.++.+++..||...+|+..++++++.| |+++|||||||.||.|++.+|+++.++ +|++||++|...+|
T Consensus 65 ~~~~~~~ni~~~L~~lF~~aik~a~Pd~~~vp~liaps~~~kFGDYQCNnAMgl~~~lK~kg~~~-~P~~va~~l~~~lP 143 (656)
T KOG4426|consen 65 KNEKFTSNIFRRLQSLFDVAIKLAFPDLPDVPLLIAPSPNAKFGDYQCNNAMGLSSKLKGKGINK-RPRDVAQELQKHLP 143 (656)
T ss_pred cCccccccHHHHHHHHHHHHHHHhCCCCCCCCceeccCcccccccccccchhhHHHHHhhcCCcc-CcHHHHHHHHhhCC
Confidence 4568899999999999999999999965577777776 478999999999999999999999995 59999999999999
Q ss_pred CCCCeeeEEEecCCeEEEEeChhHHHHHHHHHHHcCCCCCCCcCCCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHH
Q 010832 82 PSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARML 161 (499)
Q Consensus 82 ~~~~~~~v~vag~GfiN~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll 161 (499)
.++.|++++|+||||||++|+.+|+++.+..++.+|-. .|....++|+|+|+|||++|.|||||+||+||||+|||+|
T Consensus 144 ~se~vEk~~iagpGFiNv~Ls~d~~~~~i~nll~~GV~--~P~l~~KrvlVDFSSPNIAKeMHVGHLRSTIIGdsl~Rll 221 (656)
T KOG4426|consen 144 TSEMVEKCEIAGPGFINVFLSKDYMSKQISNLLVNGVK--LPTLSVKRVLVDFSSPNIAKEMHVGHLRSTIIGDSLCRLL 221 (656)
T ss_pred chhhhhhhcccCCceEEEEechHHHHHHHHHHHHcCCC--CcccceeeEEEecCCCcHHHHhhhhhhhhhhHhHHHHHHH
Confidence 88899999999999999999999999999998877754 3444569999999999999999999999999999999999
Q ss_pred HHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHHHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHH
Q 010832 162 EFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKY 241 (499)
Q Consensus 162 ~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~ 241 (499)
++.|++|.|.||+||||+|+|||+++++++||+.... ..+|.+|+-.|++++.+++.|++|+++|.+..++|+.|||..
T Consensus 222 E~~~~dVlR~NHvGDWGTQFGMLIahL~dkFPd~l~v-sp~IgDLQvFYkeSKkrFD~deeFKkrAyq~VV~LQggdp~~ 300 (656)
T KOG4426|consen 222 EFSGVDVLRRNHVGDWGTQFGMLIAHLFDKFPDYLSV-SPPIGDLQVFYKESKKRFDEDEEFKKRAYQAVVRLQGGDPDI 300 (656)
T ss_pred HhcCcceEeeccccchHHHHHHHHHHHHHhCCchhcc-CCCchhHHHHHHHHHhccCcCHHHHHHHHHHeeecccCCChH
Confidence 9999999999999999999999999999999985543 358999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCeeeeeccccccCcHHHHHHHHHHCCCeEeecCeEEEEecCCCCCeEEEcCCCcccc
Q 010832 242 HEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNY 321 (499)
Q Consensus 242 ~~~w~~~~~~~~~~~~~~~~~LgI~fd~~~es~~~~~v~~~i~~L~~~g~~y~~dGa~~~~~~g~~~d~vl~ksDG~~~Y 321 (499)
++.|..+|+.+.+.|...|++|.|+....|||+|++.+.++++.|..+|++.++||+-+++.+|-+.|..++||||..||
T Consensus 301 ~kAW~~ICdvSr~ef~kvY~rLdi~l~e~GESFYq~~m~~vveel~~kglvee~~Gr~i~f~~g~~IPLtvVKSDGGftY 380 (656)
T KOG4426|consen 301 RKAWALICDVSRKEFQKVYNRLDISLKERGESFYQDRMAEVVEELKSKGLVEEDDGRRIMFPEGCDIPLTVVKSDGGFTY 380 (656)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhcchHhhcchhhhhhHHHHHHHHHhcCCceeecCCceEeccCCCCcceEEEecCCCccc
Confidence 99999999999999999999999999888999999999999999999999999999988888888889999999999999
Q ss_pred cchhHHHHHHHHhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCccc
Q 010832 322 ASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVR 401 (499)
Q Consensus 322 ~t~DiA~~~~k~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~ 401 (499)
.|+|+|+.++|+++..+||+|||++++|..||..++++++..||.. +..++..|++||+|+|.||+|+.||.|.+|.
T Consensus 381 dtsDlaAl~yRl~EEkadwiIYVvD~GQs~Hf~t~fkAar~~gwld---~~~~RV~HvgFGlVLGeD~KkFkTRsgetVr 457 (656)
T KOG4426|consen 381 DTSDLAALKYRLNEEKADWIIYVVDSGQSQHFNTIFKAARKAGWLD---PTYPRVEHVGFGLVLGEDKKKFKTRSGETVR 457 (656)
T ss_pred ccchHHHHHHHHHHhhcCeEEEEeeCchhHHHHHHHHHHHHcCccC---CCccceeeeeeeeEEccCcccccccccceee
Confidence 9999999999999999999999999999999999999999999973 6788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcccCCchhHHHHHHHHH
Q 010832 402 LVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARI 481 (499)
Q Consensus 402 l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~n~~~YlqYa~aR~ 481 (499)
|.|||+|+..|+.+.+.+|+++..|+++|+..+++.|+-++|+|.+|++++.++|.|++|+|++-.|||++||.|||+||
T Consensus 458 L~DLLdEg~kRs~~~Liergrdk~~tpeeL~~a~eavayGciKYaDL~hnR~~dY~FSFDkML~DrGnTAvYLLYa~tRI 537 (656)
T KOG4426|consen 458 LLDLLDEGKKRSKEKLIERGRDKVLTPEELDAAQEAVAYGCIKYADLSHNRITDYIFSFDKMLEDRGNTAVYLLYAYTRI 537 (656)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhcchhHhhhccccccceeeeHHHHhhccCcceehhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCC----hhhhhc
Q 010832 482 CSIIRKSGKD----IEELKK 497 (499)
Q Consensus 482 ~silrk~~~~----~~~~~~ 497 (499)
|||.||+|.| ++++++
T Consensus 538 cSI~rksg~d~~~l~~~lkk 557 (656)
T KOG4426|consen 538 CSIARKSGKDNVDLIKELKK 557 (656)
T ss_pred HHHHHHcCCchhhHHHHHHh
Confidence 9999999999 666654
No 5
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=100.00 E-value=2.7e-96 Score=798.71 Aligned_cols=455 Identities=35% Similarity=0.556 Sum_probs=397.5
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCcccccc-cCCCCcccccchHHHHHHhhcCCCCCCCChHHHHHHHHHhCCCCCCeeeEE
Q 010832 12 KRELEKVFDLALKATVPNETDVRPLIAA-CTAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCS 90 (499)
Q Consensus 12 ~~~~~~~l~~~l~~~~~~~~~~~~~v~~-~~~~~gd~~~~~a~~lak~~~~~~~~~~~p~~iA~~i~~~l~~~~~~~~v~ 90 (499)
++.|++.|.+++........ ..+.+++ |++.|||||||+||.+||.++ ++|++||++|++.|...+.|++|+
T Consensus 2 ~~~i~~~~~~~l~~~~~~~~-~~~~i~~~~~~~~GD~~~~~a~~lak~~~------~~P~~iA~~i~~~l~~~~~i~~ve 74 (566)
T TIGR00456 2 KTLLKDEISAALLKAGLSKE-SEILLEETPNPEFGDYASNIAFPLAKVLK------KNPRAIAEEIVLKLKTGEIIEKVE 74 (566)
T ss_pred hHHHHHHHHHHHHhcccccc-cceeeecCCCCCCCccccHHHHHHHHHcC------CCHHHHHHHHHHhCCCcCcEeEEE
Confidence 45566777777765421111 1234454 478999999999999999999 999999999999997667899999
Q ss_pred EecCCeEEEEeChhHHHHHHH-HHHHcCCCCCCCcCCCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEE
Q 010832 91 VAGPGFVNVVLSKNWMAKNIQ-KMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVL 169 (499)
Q Consensus 91 vag~GfiN~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~ 169 (499)
++|| ||||+|++.++...+. .++..+..++.....+++|+||||||||+|||||||+|++++||+|+|+|+++||+|.
T Consensus 75 ~~gp-fiN~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~ve~~spn~~~~~hiGh~r~~~~gd~l~r~~~~~g~~v~ 153 (566)
T TIGR00456 75 AAGP-FINFFLSPQKLLERLIQKILTQKEDYGSKKLKNKKIIIEFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDVI 153 (566)
T ss_pred EeCC-EEEEEEcHHHHHHHHHHHHHhcccccCCCCCCCCeEEEEecCCCCCCCCchhhhHHHHHHHHHHHHHHHCCCCee
Confidence 9998 9999999987777744 6666655443222237899999999999999999999999999999999999999999
Q ss_pred EEeccCCcchHHHHHHHHHHhhCCCCC-ccccchHHHHHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHH
Q 010832 170 RRNHVGDWGTQFGMLIEYLFEKFPNSE-DANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQI 248 (499)
Q Consensus 170 ~~~yi~D~G~Qi~~l~~~~~~~~~~~~-~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~ 248 (499)
|+|||||||+||++++.++.....+.. .....++.++...|+++++.++.++++.+++++.+.++|.||+++.++|+.+
T Consensus 154 r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~~~w~~~ 233 (566)
T TIGR00456 154 REYYVNDWGRQFGLLALGVEKFGNEKLNEAVKKPDHGLEGFYVEINKRLEENEELEEEARELFVKLESGDEEAIKLWKRL 233 (566)
T ss_pred EEeeecchHHHHHHHHHHHHHhCCccccCcccCChHHHHHHHHHHHHHHhhCccHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 999999999999999988754333211 1134567778788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCeee-ee--ccccccCcHHHHHHHHHHCCCeEeecCeEEEEec--CCC-CCeEEEcCCCccccc
Q 010832 249 CEISRKEFDKVYKRLRVDLE-EK--GESFYNPYIPGVIDELSKQGLVEESQGARVIFIE--GVN-IPLIIVKSDGGFNYA 322 (499)
Q Consensus 249 ~~~~~~~~~~~~~~LgI~fd-~~--~es~~~~~v~~~i~~L~~~g~~y~~dGa~~~~~~--g~~-~d~vl~ksDG~~~Y~ 322 (499)
++++++.|+++|++|||+|| |+ +|++|.+.+.++++.|+++|++|++ ||+|++++ |++ +|+||+||||++||+
T Consensus 234 ~~~~l~~~~~~~~~l~V~fD~~~~E~e~~~~~~~~~v~~~L~~~g~~~~~-Ga~~~~~~~~~d~~~~~vl~ksDGt~~Y~ 312 (566)
T TIGR00456 234 VEYSLEGIKETLARLNIHFDSFVWEGESVKNGMVPKVLEDLKEKGLVVED-GALWLDLTLFGDKDKDRVLQKSDGTYLYL 312 (566)
T ss_pred HHHHHHHHHHHHHHcCCceeeeeccccccccccHHHHHHHHHHCCCEEEc-CCEEEEcccccCCCCCeEEEECCCCceec
Confidence 99999999999999999997 55 5678888999999999999999977 99999987 455 689999999999999
Q ss_pred chhHHHHHHHHhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccH
Q 010832 323 STDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRL 402 (499)
Q Consensus 323 t~DiA~~~~k~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l 402 (499)
|+|||||.+|+.. ++|++|||||++|+.||+|++++++++|+. ...++.|++||+|.+ .|||||+||+|++
T Consensus 313 t~DiA~~~~k~~~-~~d~iI~V~g~~q~~h~~~v~~~l~~lG~~-----~~~~l~h~~~~~V~~---~kmSkr~Gn~V~~ 383 (566)
T TIGR00456 313 TRDIAYHLDKLER-GFDKMIYVWGSDHHLHIAQFFAILEKLGFY-----KKKELIHLNFGMVPL---GSMKTRRGNVISL 383 (566)
T ss_pred hhhHHHHHHHHhc-CCCEEEEEecCcHHHHHHHHHHHHHHcCCC-----CCCceEEEEEEEEEC---CCCCccCCceeeH
Confidence 9999999999964 999999999999999999999999999983 356899999999985 4799999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcccCCchhHHHHHHHHHH
Q 010832 403 VDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARIC 482 (499)
Q Consensus 403 ~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~n~~~YlqYa~aR~~ 482 (499)
+|+++++..+|.+.+.++++. +.+++++.+|++|+||++|++.+.++++|||+.++++++|++|||||+|||+|
T Consensus 384 ~dll~~~~~ra~~~i~~~~~~------~~~~~~~~vg~dAvRy~~L~~~~~~d~~Fd~d~~~~~~~n~~~yiqYa~aR~~ 457 (566)
T TIGR00456 384 DNLLDEASKRAGNVITIKNDL------EEEDVADAVGIGAVRYFDLSQNRETHYVFDWDAMLSFEGNTAPYIQYAHARIC 457 (566)
T ss_pred HHHHHHHHHHHHHHHHhcCCc------cHHHHHHHhcccceeeHHhhcCCCCCceecHHHHhccCCCCchhHHHHHHHHH
Confidence 999999999999999887543 66789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCC
Q 010832 483 SIIRKSGK 490 (499)
Q Consensus 483 silrk~~~ 490 (499)
||+||++.
T Consensus 458 SIlrK~~~ 465 (566)
T TIGR00456 458 SILRKADI 465 (566)
T ss_pred HHHHhccc
Confidence 99999964
No 6
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.1e-87 Score=723.53 Aligned_cols=399 Identities=37% Similarity=0.556 Sum_probs=353.0
Q ss_pred hHhHHHHHHHHHHHHHHhhCCCCCCCcccccc-cCCCCcccccchHHHHHHhhcCCCCCCCChHHHHHHHHHhCCCCCCe
Q 010832 8 TGNVKRELEKVFDLALKATVPNETDVRPLIAA-CTAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMI 86 (499)
Q Consensus 8 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~v~~-~~~~~gd~~~~~a~~lak~~~~~~~~~~~p~~iA~~i~~~l~~~~~~ 86 (499)
|+++++.++++|.+++...... ......+++ |++++|||+||+||.+||.++ ++|++||++|++. |
T Consensus 2 ~~~~~~~i~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~gd~~~~~a~~lak~~~------~~p~~ia~~i~~~------i 68 (507)
T PRK01611 2 MMDIKELLAEALAAALEAGGLP-ELPAVLIERPKDPEHGDYATNVAMQLAKKLK------KNPREIAEEIVEA------I 68 (507)
T ss_pred hHHHHHHHHHHHHHHHHhcccc-ccccceeecCCCCCccCeecHHHHHHHHHcC------CCHHHHHHHHHhh------e
Confidence 5578888888888888654221 100123554 478999999999999999999 9999999999975 7
Q ss_pred eeEEEecCCeEEEEeChhHHHHHHHHHHHcCCCCCC-CcCCCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCC
Q 010832 87 ESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWA-PKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSN 165 (499)
Q Consensus 87 ~~v~vag~GfiN~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G 165 (499)
++|+++|||||||+|++.++.+.+.+++..+..++. +.+++++|+||||||||+||+||||+|++++||+|+|+|+++|
T Consensus 69 ~~v~~~~~gfiN~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G 148 (507)
T PRK01611 69 EKVEIAGPGFINFFLDPAALAELVLAILEAGERYGRSDIGKGKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAG 148 (507)
T ss_pred eEEEEeCCCEEEEEECHHHHHHHHHHHHhchhhcCCCcCCCCCEEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcC
Confidence 899999999999999999999999888766554332 3357889999999999999999999999999999999999999
Q ss_pred CeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHHHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHH
Q 010832 166 VEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAW 245 (499)
Q Consensus 166 ~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w 245 (499)
|+|++++|+||||+|+++++.+.. ..|
T Consensus 149 ~~V~~~~~i~D~G~qi~~~a~~~~-----------------------------------------------------~~~ 175 (507)
T PRK01611 149 YDVTREYYVNDAGTQIGMLIASLE-----------------------------------------------------LLW 175 (507)
T ss_pred CcEEEEeeeCCccHHHHHHHHHHH-----------------------------------------------------HHH
Confidence 999999999999999998764310 257
Q ss_pred HHHHHHHHHHHHHHHHHcCCeee-eecc--ccccCcHHHHHHHHHHCCCeE-eecCeEEEEec--CCCCCeEEEcCCCcc
Q 010832 246 AQICEISRKEFDKVYKRLRVDLE-EKGE--SFYNPYIPGVIDELSKQGLVE-ESQGARVIFIE--GVNIPLIIVKSDGGF 319 (499)
Q Consensus 246 ~~~~~~~~~~~~~~~~~LgI~fd-~~~e--s~~~~~v~~~i~~L~~~g~~y-~~dGa~~~~~~--g~~~d~vl~ksDG~~ 319 (499)
+++++.+++.|+++|++|||+|| |.++ +.+.+.+.++++.|+++|++| +++|++||+++ |+++|+||+||||++
T Consensus 176 ~~~~~~~~~~~~~~l~~LgI~~D~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~~Ga~~~~~~~~~~~~~~vl~ksdG~~ 255 (507)
T PRK01611 176 RKAVDISLDEIKEDLDRLGVHFDVWFSESELYYNGKVDEVVEDLKEKGLLYVESDGALWVRLTEFGDDKDRVLIKSDGTY 255 (507)
T ss_pred HHHHHHHHHHHHHHHHHcCCeeeEEeecCcchhcchHHHHHHHHHHCCCEEEeeCCcEEEEchhhCCCCCeEEEECCCCc
Confidence 88999999999999999999996 5444 456788999999999999999 99999999987 556789999999999
Q ss_pred cccchhHHHHHHHHhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCc
Q 010832 320 NYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEV 399 (499)
Q Consensus 320 ~Y~t~DiA~~~~k~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~ 399 (499)
||+|+|||||.||+.. +|++|||||++|+.||+|++++++++|+.+ +....+.|+.||+|++++|+|||||+||+
T Consensus 256 ~Y~t~Dia~~~~k~~~--~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~---~~~~~~~h~~~glv~~~~g~KMSkR~Gn~ 330 (507)
T PRK01611 256 TYFTRDIAYHLYKFER--FDRVIYVVGADHHGHFKRLKAALKALGYDP---DALEVLLHQMVGLVRGGEGVKMSTRAGNV 330 (507)
T ss_pred cchHHHHHHHHHHHhh--cCEEEEEECCChHHHHHHHHHHHHHcCCCc---ccceEEEEEEEEeeECCCCCcccCCCCce
Confidence 9999999999999964 899999999999999999999999999852 22355999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcccCCchhHHHHHHH
Q 010832 400 VRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHA 479 (499)
Q Consensus 400 v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~n~~~YlqYa~a 479 (499)
|+++||++++..+|.+.+.++ ++|++||++|+||++|++++.++++|||+++++++++|+||+|||||
T Consensus 331 i~l~dll~~a~g~~~~~~~~~------------~~a~~vgidAiR~~~L~~~~~~~~~Fd~~~~~~~~~~~~~yvqYa~a 398 (507)
T PRK01611 331 VTLDDLLDEAVGRARELIEEK------------EIAEAVGIDAVRYFDLSRSRDKDLDFDLDLALSFEGNNPPYVQYAHA 398 (507)
T ss_pred eEHHHHHHHHHHHHHHHHHhh------------hhhhhhccceeEehhhhcCCCCCCccCHHHHHhhcCCCcHHHHHHHH
Confidence 999999999999999988764 79999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 010832 480 RICSIIRKSG 489 (499)
Q Consensus 480 R~~silrk~~ 489 (499)
|+|||+||++
T Consensus 399 R~~sil~k~~ 408 (507)
T PRK01611 399 RICSILRKAA 408 (507)
T ss_pred HHHHHHHhhh
Confidence 9999999975
No 7
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.7e-79 Score=618.15 Aligned_cols=431 Identities=32% Similarity=0.487 Sum_probs=383.9
Q ss_pred CCCCcccccchHHHHHHhhcCCCCCCCChHHHHHHHHHhCCCCCCeeeEEEecCCeEEEEeChhHHHHHHHHHHHc-CCC
Q 010832 41 TAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVD-GIE 119 (499)
Q Consensus 41 ~~~~gd~~~~~a~~lak~~~~~~~~~~~p~~iA~~i~~~l~~~~~~~~v~vag~GfiN~~l~~~~~~~~~~~~~~~-~~~ 119 (499)
+++-||.-.++. .++ ..+.+.|.+.+++++....++++...|| |++|+|++..+.+.+...+.. .+.
T Consensus 33 ~~~r~~~~~~lp-----~i~------~~~~~~a~~~~e~~~~~~~v~~~~~~~~-~~~f~ln~~~~~k~~l~~i~~~~~~ 100 (567)
T KOG1195|consen 33 SMDRPDLLLPLP-----RIR------VQGKEDALRWAEALPCNRIVEEVGASGP-FVQFFLNRRRLIKSVLPIIEEQREK 100 (567)
T ss_pred cCCCCCccccCc-----ccc------cCCHHHHHHHHHhcccccchHHHhcCCC-eEEEEecHHHHHHHHHHHHHHHhcc
Confidence 456788766544 233 4455999999999998788999999987 999999999999988765554 444
Q ss_pred CC-CCcCCCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCcc
Q 010832 120 TW-APKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDA 198 (499)
Q Consensus 120 ~~-~~~~~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~ 198 (499)
++ ...+++++|+|||+|||++||+|+||+|+++||..++|+.+.+||+|+++||++|||+||++++..+ .++++++..
T Consensus 101 ~g~~~~~~~k~iVVefSSPNIAK~FHvGhLRsTiiG~flanl~e~~G~~Vtr~NYLGDWGkQFgll~~g~-~~~g~e~~L 179 (567)
T KOG1195|consen 101 YGKNELGSGKKIVVEFSSPNIAKPFHVGHLRSTIIGNFLANLHEALGWEVTRVNYLGDWGKQFGLLALGF-QLYGDEEEL 179 (567)
T ss_pred cCccccccCceEEEEecCCCcccccccchhhhhhhhhHhhhhHHhhCCceeehhhhhHHHHHhhHHhccH-HhhCchhhh
Confidence 33 3346799999999999999999999999999999999999999999999999999999999998654 456664445
Q ss_pred ccchHHHHHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeee-eeccc-ccc
Q 010832 199 NETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGES-FYN 276 (499)
Q Consensus 199 ~~~~i~~l~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd-~~~es-~~~ 276 (499)
.-+||.+|.+.|.+++...+.+++..+.|++.+.+||.||.++.++|+++++.+++.+.++|+||||+|| |.+|| .++
T Consensus 180 ~~~pI~hL~dvYVk~nk~~~~~~~~~~~are~f~rlE~~d~e~~k~Wqrfr~lsIe~l~~~Y~Rl~v~FD~y~gESqv~~ 259 (567)
T KOG1195|consen 180 QLNPIKHLFDVYVKINKDAEKDPDTAEEAREFFKRLEDGDEEHLKLWQRFRDLSIEKLIKTYNRLNVKFDEYSGESQVSN 259 (567)
T ss_pred ccchHHHHHHHHHHhhhhhhhCcchHHHHHHHHHHHhcccHHHHHHHHHhhhhhHHHHHHHHHHhceeeeeccchHHHHH
Confidence 5689999999999999988888999999999999999999999999999999999999999999999996 77898 557
Q ss_pred CcHHHHHHHHHHCCCeEeecCeEEEEecCCCC---CeEEEcCCCcccccchhHHHHHHHHhhcCCCeEEEEecCCccccH
Q 010832 277 PYIPGVIDELSKQGLVEESQGARVIFIEGVNI---PLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHF 353 (499)
Q Consensus 277 ~~v~~~i~~L~~~g~~y~~dGa~~~~~~g~~~---d~vl~ksDG~~~Y~t~DiA~~~~k~~~~~~d~~i~V~g~~q~~hf 353 (499)
+.+.++++.++..|++.+.+|+.||++++.++ ..++.||||+++|.|||||++++|+..+.||++|||++.+|+.||
T Consensus 260 e~~~~~~d~~rs~~l~~e~dG~~vidL~~~~~~~~~~~V~ksdgttLYltRdiaaal~Rl~~y~fdr~iYVvd~~Q~~hf 339 (567)
T KOG1195|consen 260 EKMQEALDLLRSANLTEEIDGTIVIDLSKIDKKAGKAVVQKSDGTTLYLTRDIAAALDRLEKYSFDRLIYVVDSQQKDHF 339 (567)
T ss_pred HHHHHHHHHHHhcCCcccCCCcEEEEecccCcccceEEEEcCCCceehHHHHHHHHHHHHHhcCcceEEEEechHHHHHH
Confidence 88999999999999888999999999985443 356889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHH
Q 010832 354 DMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQ 433 (499)
Q Consensus 354 ~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~ 433 (499)
.++|.+++++|+ +|+..++||.||+|.+ ||+|+|+++.++|+++++.+.|++.|.... +.+...++.++
T Consensus 340 ~~lf~ilk~mg~-----~~a~~~qHV~~G~v~G-----msTRkG~~~fl~dil~e~re~m~e~M~s~~-t~~~~~~~~~~ 408 (567)
T KOG1195|consen 340 CQLFEILKKMGF-----DWAKKLQHVNFGRVQG-----MSTRKGKVVFLDDILEEAREQMLEVMASNK-TKPVQMANPDE 408 (567)
T ss_pred HHHHHHHHHhCc-----hhhhhcceeccccccc-----ccccCCceeeHHHHHHHHHHHHHHHHHhcc-CCCCCCCCHHH
Confidence 999999999999 6899999999999986 999999999999999999999999998762 22566788899
Q ss_pred HHHHhhhhHHHHHhhcCCCCCCccccHHHHhcccCCchhHHHHHHHHHHHHHHHhC-CChhhh
Q 010832 434 TAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSG-KDIEEL 495 (499)
Q Consensus 434 ~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~n~~~YlqYa~aR~~silrk~~-~~~~~~ 495 (499)
+|+.+|++||.+.++...+.+.+.|+|+.+.+++|+|||||||+|+|+.||+||.+ .+++.+
T Consensus 409 vad~lg~sAviv~d~k~rr~s~yeF~w~~~~~~~gdtg~yLQY~HsRL~Slerk~~~~~~~~l 471 (567)
T KOG1195|consen 409 VADRLGLSAVIVQDFKGRRISNYEFSWNRVLSFEGDTGPYLQYTHSRLRSLERKFSDVTLDDL 471 (567)
T ss_pred HHHHHhhHHHHHHHHHHHhcccceEEhhhhheecCCchHHHHHHHHHHHHHHHhccccCchhh
Confidence 99999999999999999999999999999999999999999999999999999986 444443
No 8
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=100.00 E-value=4.9e-76 Score=605.78 Aligned_cols=340 Identities=38% Similarity=0.586 Sum_probs=283.3
Q ss_pred HHHHHHcCCCCCCCcCCCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHH
Q 010832 110 IQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLF 189 (499)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~ 189 (499)
|.+++.+++.+....+++++|+||||||||||||||||+||++|||+|||+|+++||+|+++|||||||+||++++.++.
T Consensus 2 i~~il~~~~~y~~~~~~~~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~ 81 (354)
T PF00750_consen 2 INEILEKGEEYGSEKGKGKKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQIGLLAASYK 81 (354)
T ss_dssp HHHHHHHGGGTT--TTTSEEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHHHH
T ss_pred HHHHHhcchhcccccCCCCEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHHHH
Confidence 45677777766334578999999999999999999999999999999999999999999999999999999999997765
Q ss_pred hhCCCCCccccchHHHHHHHHHHHhcccCC-------ChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHH
Q 010832 190 EKFPNSEDANETAIGELQEFYRRSKNRFDS-------DPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKR 262 (499)
Q Consensus 190 ~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~-------~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~ 262 (499)
....+.. ...+++.++.+.|......... .+.+.+++++.+.++|+|+++..+.|+. .+++..+++|++
T Consensus 82 ~~~~~~~-~~~~~~~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~---~~~~~~k~~l~~ 157 (354)
T PF00750_consen 82 KFGDEEL-LEEDPIKHLEDLYVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQK---YILEWSKETLQR 157 (354)
T ss_dssp HHHHHHT-SHSSCHHHHHHHHHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHH---HHHHHHHHHHHH
T ss_pred hhhhhhh-cccccccchhhhhhhhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHH---HHHHHHHHHHHH
Confidence 4322111 1346788888888876543222 2348889999999999999998888866 245667778999
Q ss_pred cCCeee-ee--ccccccCcHHHHHHHHHHCCCeEeecCeEEEEec--CCCCCeEEEcCCCcccccchhHHHHHHHHhhcC
Q 010832 263 LRVDLE-EK--GESFYNPYIPGVIDELSKQGLVEESQGARVIFIE--GVNIPLIIVKSDGGFNYASTDLAALWYRLNEEK 337 (499)
Q Consensus 263 LgI~fd-~~--~es~~~~~v~~~i~~L~~~g~~y~~dGa~~~~~~--g~~~d~vl~ksDG~~~Y~t~DiA~~~~k~~~~~ 337 (499)
|++.|| |+ +|+++.+.+.+++++|+++|+++++||++|++++ |+++|+||+||||++||+|||||||++|++.++
T Consensus 158 l~i~fDv~~~E~Es~~~~~v~~vl~~L~e~g~~~~~dGa~~i~~~~~g~~k~~Vl~ksDGt~~Y~trDiA~~~~r~~~~~ 237 (354)
T PF00750_consen 158 LYIRFDVWFDESESFYSGKVDEVLERLKEKGLLYESDGALWIDLTKFGDDKDRVLRKSDGTSTYLTRDIAYHLYRFEEYG 237 (354)
T ss_dssp TT---SEEEEHCHHHHTTHHHHHHHHHHCTTTEEEETTEEEEEGCCTSTSS-EEEEETTSEB-HHHHHHHHHHHHHCCSS
T ss_pred HHHHhCcCcccchhhhhhHHHHHHHHHHhCCcEEecCCcEEEechhcCCCCcceEEcCCCceEEEcchHHHHHHHHhhhc
Confidence 999995 54 6788899999999999999999999999999998 788899999999999999999999999998899
Q ss_pred CCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCC-ccccccCCcccHHHHHHHHHHHHHHH
Q 010832 338 AEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK-RLRTRFSEVVRLVDLLDEAKNRSKAV 416 (499)
Q Consensus 338 ~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~-KMSkR~G~~v~l~dll~e~~~~a~~~ 416 (499)
+|++|||+|++|+.||+|+++++++||+. +.+..+.|++||+|++++|+ |||||+|++|+|+|||+++.++|.+
T Consensus 238 ~d~~iyV~~~~q~~hf~~l~~~l~~lg~~----~~~~~~~H~~~g~vl~~~gk~~mstR~G~~i~l~dllde~~~~a~~- 312 (354)
T PF00750_consen 238 FDKIIYVVGADQKGHFKQLFAILEALGYD----PEAVKLQHVSFGVVLLKDGKVKMSTRKGNVITLDDLLDEAVERALE- 312 (354)
T ss_dssp -SEEEEEEEGGGHHHHHHHHHHHHHTT-H----HHHCTEEEEEE-EEEETTBEESS-TTTTSSTBHHHHHHHHHHHHHH-
T ss_pred cccEEEEecCchhhHHHHHHHHHHHhCCC----CCCCEEEEEEEEEEEcCCCCccccCCCCCceEHHHHHHHHHHHHHH-
Confidence 99999999999999999999999999984 34678999999999999998 9999999999999999999999999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccH
Q 010832 417 LIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSF 460 (499)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~ 460 (499)
+.++.+. +++++.+++|+++|++||||++|++++.++++|||
T Consensus 313 ~~~~~~~--~~~~~~~~~a~~vg~~Ai~y~~l~~~~~~~~~Fdw 354 (354)
T PF00750_consen 313 IMEKNPD--LSEEEREEIAEQVGVGAIRYFDLSQKRNKDYVFDW 354 (354)
T ss_dssp HHHHHTT--CTHCHHHHHHHHHHHHHHHHHHHSS-TTS-EEEEC
T ss_pred HHhcccC--CChhhHHHHHHHhhhhHHHHHHHhccCCCCceecC
Confidence 6666444 89999999999999999999999999999999998
No 9
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=100.00 E-value=7.9e-54 Score=411.61 Aligned_cols=209 Identities=36% Similarity=0.551 Sum_probs=193.1
Q ss_pred eEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHHHH
Q 010832 129 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 208 (499)
Q Consensus 129 ~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l~~ 208 (499)
+|+||||||||+||+||||+|++++||+|+|+|+++||+|+++||+||||.||++++...
T Consensus 1 ~v~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~-------------------- 60 (212)
T cd00671 1 KILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSL-------------------- 60 (212)
T ss_pred CeEEEecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHH--------------------
Confidence 589999999999999999999999999999999999999999999999999999775321
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeee-eeccccccCcHHHHHHHHH
Q 010832 209 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGESFYNPYIPGVIDELS 287 (499)
Q Consensus 209 ~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd-~~~es~~~~~v~~~i~~L~ 287 (499)
..|+++++.+.+.|.++|++|||+|| |.+||.+.+.+.++++.|+
T Consensus 61 ----------------------------------~~~~~~~~~~~~~~~~~~~~L~i~~d~~~~es~~~~~~~~~i~~L~ 106 (212)
T cd00671 61 ----------------------------------EKWRKLVEESIKADLETYGRLDVRFDVWFGESSYLGLMGKVVELLE 106 (212)
T ss_pred ----------------------------------HHHHHHHHHHHHHHHHHHHHhCCcCceecchhhhhhHHHHHHHHHH
Confidence 12788999999999999999999996 6778888888999999999
Q ss_pred HCCCeEeecCeEEEEec--CCCCCeEEEcCCCcccccchhHHHHHHHHhhcCCCeEEEEecCCccccHHHHHHHHHHcCC
Q 010832 288 KQGLVEESQGARVIFIE--GVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGW 365 (499)
Q Consensus 288 ~~g~~y~~dGa~~~~~~--g~~~d~vl~ksDG~~~Y~t~DiA~~~~k~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~ 365 (499)
++|++|+.+|++||+++ ++.+|+||+||||+++|.|+||||+++|+. +++|++|||+|++|..||++++++++++|+
T Consensus 107 ~~g~~~~~~g~~~~~~~~~~~~~d~vl~rsdG~~~Y~~~DlA~~~~~~~-~~~~~~i~v~g~~~~~~~~~~~~~~~~lg~ 185 (212)
T cd00671 107 ELGLLYEEDGALWLDLTEFGDDKDRVLVRSDGTYTYFTRDIAYHLDKFE-RGADKIIYVVGADHHGHFKRLFAALELLGY 185 (212)
T ss_pred HCCCEEEeCCcEEEechhhCCCCCeEEEECCCCccchHHHHHHHHHHHh-cCCCEEEEEECCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999987 345789999999999999999999999995 899999999999999999999999999998
Q ss_pred CCCCCCCCCcEEEEEeEEEecCCCCccccccC
Q 010832 366 LSADDSTYPKASHVGFGLVLGEDGKRLRTRFS 397 (499)
Q Consensus 366 ~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G 397 (499)
. .++++.|++||+|.+++|+|||||+|
T Consensus 186 ~-----~~~~~~h~~~~~v~~~~~~kmS~R~G 212 (212)
T cd00671 186 D-----EAKKLEHLLYGMVNLPKEGKMSTRAG 212 (212)
T ss_pred C-----CCCCeEEEEEEeEEcCCCCCCCCCCC
Confidence 4 35789999999999888999999998
No 10
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.7e-40 Score=337.09 Aligned_cols=260 Identities=17% Similarity=0.182 Sum_probs=214.3
Q ss_pred CCCcCCCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCcccc
Q 010832 121 WAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANE 200 (499)
Q Consensus 121 ~~~~~~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~ 200 (499)
+.|. .+.+|.++.|+|+|+...||||+|+.|..|+|.|+|+++||.|..+.+|+|. +
T Consensus 15 F~P~-~~~~V~mYvCGpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDI----------------------D 71 (464)
T COG0215 15 FVPI-DPGKVKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDI----------------------D 71 (464)
T ss_pred ccCC-CCCeEEEEecCCccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccc----------------------c
Confidence 4444 3455999999999999999999999999999999999999999999999993 3
Q ss_pred chHHHHHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCee-eeecc-ccccCc
Q 010832 201 TAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKGE-SFYNPY 278 (499)
Q Consensus 201 ~~i~~l~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~f-d~~~e-s~~~~~ 278 (499)
|+| .+++.+ +| ..|+++++.+...|.++++.|||.. +.++. +.|.+.
T Consensus 72 DKI------i~rA~~--------------------~g-----~~~~ev~~~~i~~f~~D~~aL~v~~p~~~PraTe~I~~ 120 (464)
T COG0215 72 DKI------INRARE--------------------EG-----LSIREVAERYIAAFFEDMDALNVLPPDIEPRATEHIDE 120 (464)
T ss_pred HHH------HHHHHH--------------------hC-----CCHHHHHHHHHHHHHHHHHHhCCCCCcccCcHhhCHHH
Confidence 433 333332 12 1367889999999999999999975 77776 888999
Q ss_pred HHHHHHHHHHCCCeEee-cCeEEEEec---------C--------------------CCCCeEEEcC--CCcccccchh-
Q 010832 279 IPGVIDELSKQGLVEES-QGARVIFIE---------G--------------------VNIPLIIVKS--DGGFNYASTD- 325 (499)
Q Consensus 279 v~~~i~~L~~~g~~y~~-dGa~~~~~~---------g--------------------~~~d~vl~ks--DG~~~Y~t~D- 325 (499)
|.++|++|+++|++|+. +|.|||++. + ++.||||||+ .|.|.|.+|+
T Consensus 121 iI~~I~~LiekG~AY~~~~G~VYFdv~~f~~YG~LS~~~~le~l~~gar~~~~~~Krnp~DFvLWK~sk~gEp~W~SPWG 200 (464)
T COG0215 121 IIEFIEKLIEKGYAYVADDGDVYFDVSKFKDYGKLSGRDSLEELQAGARVEVDEEKRNPLDFVLWKAAKPGEPSWDSPWG 200 (464)
T ss_pred HHHHHHHHHHCCceEEecCCcEEEecccchhhHhhcCCCChhHHhhccccccccccCCchhheeeccCCCCCCCCCCCCC
Confidence 99999999999999998 789999885 1 1248999995 7889999987
Q ss_pred ---HHHHHHHH--hhcCCCeEEEEecCCccccHHHHH-HHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCc
Q 010832 326 ---LAALWYRL--NEEKAEWIIYVTDVGQQLHFDMVF-SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEV 399 (499)
Q Consensus 326 ---iA~~~~k~--~~~~~d~~i~V~g~~q~~hf~~~~-~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~ 399 (499)
.+||+.+. ....+...|+|||++.++.||++. +++++-...+ ..+++..|+|. |||. .+|+|||||+||+
T Consensus 201 ~GRPGWHIECSaM~~~~LG~~~DIHgGG~DLiFPHHENEiAQsea~~g-~~~~a~yWmH~--G~l~-i~geKMSKSLGNf 276 (464)
T COG0215 201 KGRPGWHIECSAMSTKYLGETFDIHGGGSDLIFPHHENEIAQSEAATG-VKPFAKYWMHN--GFLN-IDGEKMSKSLGNF 276 (464)
T ss_pred CCCCchhHHHHHHHHHHhCCCcceecCcccccCCCcccHHHHHHhhhC-CCcceeEeEEc--ceee-ecCcCcccccCCe
Confidence 68999873 233456778999999999999764 5554332221 02789999999 6687 6799999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhccc
Q 010832 400 VRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDK 467 (499)
Q Consensus 400 v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~ 467 (499)
+|+.|+|++ ++++++||++|+.|+++|++|+.+.+.+.+
T Consensus 277 iti~d~l~~-----------------------------~~p~~lR~~lls~HYR~pl~fsee~L~~A~ 315 (464)
T COG0215 277 ITVRDLLKK-----------------------------YDPEVLRLFLLSSHYRSPLDFSEELLEEAK 315 (464)
T ss_pred eEHHHHHhh-----------------------------cCHHHHHHHHHHHHhCCccccCHHHHHHHH
Confidence 999999998 589999999999999999999999887763
No 11
>PLN02946 cysteine-tRNA ligase
Probab=100.00 E-value=1.9e-39 Score=345.78 Aligned_cols=272 Identities=16% Similarity=0.084 Sum_probs=223.7
Q ss_pred CCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHH
Q 010832 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (499)
Q Consensus 126 ~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~ 205 (499)
.+.+|.++.|+|+|++++||||+|++|..|+|+|+|++.||+|..+.+++|+|..|-
T Consensus 77 ~~~~v~~Y~CGpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi----------------------- 133 (557)
T PLN02946 77 VEGKVGMYVCGVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKII----------------------- 133 (557)
T ss_pred CCCceeEEEeCCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHH-----------------------
Confidence 467899999999999999999999999999999999999999999999999754332
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCee-eeec-cccccCcHHHHH
Q 010832 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKG-ESFYNPYIPGVI 283 (499)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~f-d~~~-es~~~~~v~~~i 283 (499)
.++.+ .| ..|+++++.+.+.|.+++++|||.. +..+ .+.|.+.+.+++
T Consensus 134 -----~~A~~--------------------~g-----~~~~ela~~y~~~f~~d~~~LnI~~p~~~pratehi~~ii~~i 183 (557)
T PLN02946 134 -----ARANE--------------------LG-----EDPISLSRRYCEEFLSDMAYLHCLPPSVEPRVSDHIPQIIDMI 183 (557)
T ss_pred -----HHHHH--------------------cC-----CCHHHHHHHHHHHHHHHHHHCCCCCCCeecCcchhHHHHHHHH
Confidence 22211 11 1245788999999999999999986 4444 478888999999
Q ss_pred HHHHHCCCeEeecCeEEEEec------------------C----------CCCCeEEEcC--CCcccccchh----HHHH
Q 010832 284 DELSKQGLVEESQGARVIFIE------------------G----------VNIPLIIVKS--DGGFNYASTD----LAAL 329 (499)
Q Consensus 284 ~~L~~~g~~y~~dGa~~~~~~------------------g----------~~~d~vl~ks--DG~~~Y~t~D----iA~~ 329 (499)
++|+++|++|+.+|.+||+++ | +..||+|||+ .|.+.|.+++ .+||
T Consensus 184 ~~Li~kG~aY~~~g~VYFdv~~f~~YG~Ls~~~l~~l~~g~rv~~~~~K~np~DFaLWK~~k~ge~~W~SPWG~GRPGWH 263 (557)
T PLN02946 184 KQILDNGCAYRVDGDVYFSVDKFPEYGKLSGRKLEDNRAGERVAVDSRKKNPADFALWKAAKEGEPFWDSPWGPGRPGWH 263 (557)
T ss_pred HHHHHCCCEEEECCeEEEecCcchhhhhcCCCChhHhhcCCCCCcccccCCccccceeccCCCCCCCccCCCCCCCCcHH
Confidence 999999999999999999885 1 1247999984 6788999987 7889
Q ss_pred HHHH--hhcCCCeEEEEecCCccccHHHHH-HHH--HH-cCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccHH
Q 010832 330 WYRL--NEEKAEWIIYVTDVGQQLHFDMVF-SAA--KR-AGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLV 403 (499)
Q Consensus 330 ~~k~--~~~~~d~~i~V~g~~q~~hf~~~~-~~~--~~-lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~ 403 (499)
+.+. ....+...|+|||++.++.||++. +++ ++ .|. +++..|+|. |+|+ .+|+|||||+||+++++
T Consensus 264 IECSaMs~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~-----~~a~yW~H~--G~v~-~~G~KMSKSlGN~itl~ 335 (557)
T PLN02946 264 IECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACCD-----SNISYWIHN--GFVT-VDSEKMSKSLGNFFTIR 335 (557)
T ss_pred HHHHHHHHHHcCCCeeEeccccccCCCcccchHHHHHHHhCC-----CCCceeeEe--eEEE-eCCCCcCCcCCCcCCHH
Confidence 8873 223345678999999999999754 344 33 343 678899997 7788 68999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcccCCchhHHHHHHHHHHH
Q 010832 404 DLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICS 483 (499)
Q Consensus 404 dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~n~~~YlqYa~aR~~s 483 (499)
|++++ ++++++||++|+.+++++++|+++.+.+. .++--|+||+++|+++
T Consensus 336 dll~~-----------------------------y~~dalR~~lLs~hyr~~l~fs~e~L~~a-~~~l~~l~~~~~~~~~ 385 (557)
T PLN02946 336 QVIDL-----------------------------YHPLALRLFLLGTHYRSPINYSDVQLESA-SERIFYIYQTLHDCEE 385 (557)
T ss_pred HHHHh-----------------------------cCccceeeeeeccCCCCCcEecHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 99987 58999999999999999999999986655 3444599999999999
Q ss_pred HHHHh
Q 010832 484 IIRKS 488 (499)
Q Consensus 484 ilrk~ 488 (499)
+++++
T Consensus 386 ~l~~~ 390 (557)
T PLN02946 386 SLQQH 390 (557)
T ss_pred Hhhhh
Confidence 98864
No 12
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=100.00 E-value=1.3e-37 Score=306.54 Aligned_cols=252 Identities=20% Similarity=0.202 Sum_probs=183.9
Q ss_pred CCCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHH
Q 010832 125 LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIG 204 (499)
Q Consensus 125 ~~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~ 204 (499)
..+++|.++.|+|+|+..+||||+|+.|..|+|.|+|++.||+|..+.+|+|. +|+
T Consensus 4 ~~~~~v~~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDi----------------------DDK-- 59 (300)
T PF01406_consen 4 LNPGKVRMYVCGPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDI----------------------DDK-- 59 (300)
T ss_dssp SCTTEEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-S----------------------SHH--
T ss_pred CCCCeEEEEcCCCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEecccc----------------------chH--
Confidence 36788999999999999999999999999999999999999999999999994 343
Q ss_pred HHHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCee-eeecc-ccccCcHHHH
Q 010832 205 ELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKGE-SFYNPYIPGV 282 (499)
Q Consensus 205 ~l~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~f-d~~~e-s~~~~~v~~~ 282 (499)
+++++.+ .| ..|+++++.+.+.|.+++++|||.. +.++. |.+.+.+.++
T Consensus 60 ----ii~~A~~--------------------~g-----~~~~ela~~y~~~f~~dm~~Lnv~~p~~~prate~i~~ii~~ 110 (300)
T PF01406_consen 60 ----IIKRARE--------------------EG-----VSPQELARRYEEEFFEDMKALNVLPPDHYPRATEHIPEIIEL 110 (300)
T ss_dssp ----HHHHHHH--------------------TT-----S-HHHHHHHHHHHHHHHHHHTT----SEEEEGGGGHHHHHHH
T ss_pred ----HHHHHHh--------------------cc-----CCHHHHHHHHHHHHHHHHHHcCCCCCccccchhccHHHHHHH
Confidence 3333332 11 2367889999999999999999997 66554 7888899999
Q ss_pred HHHHHHCCCeEeec-CeEEEEec-----C-----------------------CCCCeEEEcC--CCcccccchh----HH
Q 010832 283 IDELSKQGLVEESQ-GARVIFIE-----G-----------------------VNIPLIIVKS--DGGFNYASTD----LA 327 (499)
Q Consensus 283 i~~L~~~g~~y~~d-Ga~~~~~~-----g-----------------------~~~d~vl~ks--DG~~~Y~t~D----iA 327 (499)
++.|.++|++|+.+ |.|||+++ | +..||+|||. .|.+.|.|++ .+
T Consensus 111 i~~Li~~G~AY~~~~g~VYFdv~~~~~YG~Ls~~~~~~l~~~~~~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPG 190 (300)
T PF01406_consen 111 IEKLIDKGHAYESEDGSVYFDVSKFPDYGKLSNQDLEDLEAGARVEVDYEKRNPRDFALWKAAKPGEPSWDSPWGKGRPG 190 (300)
T ss_dssp HHHHHHTTSEEEETTSEEEE-CCGSTTTTTTTT-SHHHHHHCHHHTT-TTSSSTT-EEEEEE--TTS--B--TTSSEEE-
T ss_pred HHHHHHCCCeEEcCCCcEEEeeccccccccccccchhhHHhhhhcccccccCCCcceeeeecccccCCcccCCCccCcCc
Confidence 99999999999998 99999985 1 1358999985 5678888876 57
Q ss_pred HHHHHHh--hcCCCeEEEEecCCccccHHHHH-HHH--HHc-CCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCccc
Q 010832 328 ALWYRLN--EEKAEWIIYVTDVGQQLHFDMVF-SAA--KRA-GWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVR 401 (499)
Q Consensus 328 ~~~~k~~--~~~~d~~i~V~g~~q~~hf~~~~-~~~--~~l-G~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~ 401 (499)
||+.+.. ...+...|+|+|++.++.||++. +++ +++ |. +++..|+|. |+|. .+|+|||||.||+++
T Consensus 191 WHiECsam~~~~lG~~~DIH~GG~DL~FPHHENEiAqs~a~~g~-----~~a~~W~H~--g~l~-~~g~KMSKSlgN~~~ 262 (300)
T PF01406_consen 191 WHIECSAMSMKYLGDTFDIHGGGIDLIFPHHENEIAQSEAATGK-----PFANYWMHN--GHLN-VDGEKMSKSLGNFIT 262 (300)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEEGGGTTTHHHHHHHHHHHHHSS------SEEEEEEE----EE-ETTCE--TTTT---B
T ss_pred eeeehHHHHHHHcCCCceEEccccccCCCCccchHHHHHHhhCc-----hHHHHHHHH--HHHh-hcCccccccCCCEEE
Confidence 7777631 11223459999999999999764 444 444 42 799999999 6787 579999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcc
Q 010832 402 LVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLND 466 (499)
Q Consensus 402 l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~ 466 (499)
++|+++. ++++++||++|+.+++++++|+++.+.+.
T Consensus 263 i~dll~~-----------------------------~~~~~lR~~~l~~hYr~~l~~s~~~l~~A 298 (300)
T PF01406_consen 263 IRDLLKK-----------------------------YSPDALRLFLLSTHYRKPLNFSEENLEEA 298 (300)
T ss_dssp HHHHHTT-----------------------------S-HHHHHHHHHTS-TTS-EEE-HHHHHHH
T ss_pred HHHHhhc-----------------------------CCHHHHHHHHhcCCCCCccccCHHHHHHh
Confidence 9999876 58999999999999999999999988764
No 13
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=8.9e-37 Score=322.28 Aligned_cols=281 Identities=14% Similarity=0.110 Sum_probs=218.1
Q ss_pred CCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHH
Q 010832 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (499)
Q Consensus 126 ~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~ 205 (499)
.+.+|.++.|+|+|++++||||+|++|..|+|+|+|++.||+|..+.+|+|.|+..+ +.+ .++++|.
T Consensus 20 ~~~~v~mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~----------~~D--e~ddKii- 86 (490)
T PRK14536 20 EHGHVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTD----------DAD--SGEDKMV- 86 (490)
T ss_pred CCCceEEEeeCCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeecccccccc----------CCc--CCChHHH-
Confidence 456899999999999999999999999999999999999999999999999986332 111 1344332
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCee-eeecc-ccccCcHHHHH
Q 010832 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKGE-SFYNPYIPGVI 283 (499)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~f-d~~~e-s~~~~~v~~~i 283 (499)
+++. + .| ..++++++.+.+.|.+++++|||.+ ++++. +.|.+.+.+++
T Consensus 87 -----~~A~--------------~------~g-----~~~~e~a~~~~~~f~~d~~~Lni~~~~~~~rat~hi~~ii~~i 136 (490)
T PRK14536 87 -----KSAQ--------------E------HG-----KSVLEIAAHYTAAFFRDTARLNIERPSIVCNATEHIQDMIALI 136 (490)
T ss_pred -----HHHH--------------H------cC-----CCHHHHHHHHHHHHHHHHHHcCCCCCceecCcccHHHHHHHHH
Confidence 2221 1 12 1246789999999999999999998 56554 77888999999
Q ss_pred HHHHHCCCeEeecCeEEEEec------------------C----------CCCCeEEEcC----CC-cccccchh----H
Q 010832 284 DELSKQGLVEESQGARVIFIE------------------G----------VNIPLIIVKS----DG-GFNYASTD----L 326 (499)
Q Consensus 284 ~~L~~~g~~y~~dGa~~~~~~------------------g----------~~~d~vl~ks----DG-~~~Y~t~D----i 326 (499)
++|.++|++|+.+|.+||++. | +..||+|||. .| .+.|.+++ .
T Consensus 137 ~~L~~kG~aY~~~~~vyFdv~~~~~YG~Ls~~~~~~l~~g~~v~~~~~K~np~DFaLWK~~~~~~~~~~~W~SpWG~GRP 216 (490)
T PRK14536 137 KRLEARGHTYCAGGNVYFDIRTFPSYGSLASAAVEDLQAGARIEHDTNKRNPHDFVLWFTRSKFENHALTWDSPWGRGYP 216 (490)
T ss_pred HHHHHCCCEEEECCeEEEeCCcccchhhhcCCCHHHhhcCCcCCCCCCCCCchhchhcccccCCCCCCCcccCCCCCCCC
Confidence 999999999999999999874 1 1248999974 23 47888876 5
Q ss_pred HHHHHHHh--hcCCCeEEEEecCCccccHHHHH-HHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccHH
Q 010832 327 AALWYRLN--EEKAEWIIYVTDVGQQLHFDMVF-SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLV 403 (499)
Q Consensus 327 A~~~~k~~--~~~~d~~i~V~g~~q~~hf~~~~-~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~ 403 (499)
+||+.+.. ...+...++|++++.++.||++. .+++..++.+ .+++..|+|. |++. .+|+|||||+||+++++
T Consensus 217 GWHIECsaMs~~~lg~~~DIH~GG~DliFPHHeneiAqs~a~~g--~~~~~~w~h~--g~l~-~~g~KMSKSlGN~itl~ 291 (490)
T PRK14536 217 GWHIECSAMSMKYLGEQCDIHIGGVDHIRVHHTNEIAQCEAATG--KPWVRYWLHH--EFLL-MNKGKMSKSAGQFLTLS 291 (490)
T ss_pred ChHHHHHHHHHHHcCCceeEEeccccCCCcchhhHHHHHHHhcC--CCcceEEEEc--CEEe-ecCccccccCCCcccHH
Confidence 78887732 12233457999999999999764 5555443322 2789999998 5676 57899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcccCCchhHHHHHHHHHHH
Q 010832 404 DLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICS 483 (499)
Q Consensus 404 dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~n~~~YlqYa~aR~~s 483 (499)
||++++ ++++++||++|+.+++++++|+++.+.+... +--.++.++.++..
T Consensus 292 dll~~g----------------------------~~~~alR~~lls~~yr~~l~Fs~e~l~~a~~-~~~rl~~~~~~~~~ 342 (490)
T PRK14536 292 SLQEKG----------------------------FQPLDYRFFLLGGHYRSQLAFSWEALKTAKA-ARRSLVRRVARVVD 342 (490)
T ss_pred HHHhcC----------------------------CCHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 999974 5789999999999999999999999887633 23356666666643
No 14
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.1e-36 Score=319.95 Aligned_cols=264 Identities=17% Similarity=0.166 Sum_probs=210.5
Q ss_pred ceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHHH
Q 010832 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (499)
Q Consensus 128 ~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (499)
.+|.|+.|+|+|+.++||||+|+.|..|+|+|+|+.+||+|..+.+|+|.|+..+ .+. -++++|.
T Consensus 20 ~~v~mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg-----------~~D-~gddKIi--- 84 (481)
T PRK14534 20 SDVKVYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTG-----------DFD-DGEDKVV--- 84 (481)
T ss_pred CceEEEeCCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccC-----------Ccc-CCCcHHH---
Confidence 5899999999999999999999999999999999999999999999999987332 111 1344333
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCee-eeecc-ccccCcHHHHHHH
Q 010832 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKGE-SFYNPYIPGVIDE 285 (499)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~f-d~~~e-s~~~~~v~~~i~~ 285 (499)
+++. + .| ..|+++++.+...|.+++++|||.+ ++.+. +.|.+.+.+++++
T Consensus 85 ---~~A~--------------~------~g-----~~~~e~a~~~~~~f~~d~~~Lni~~~~~~p~atehi~~~i~~i~~ 136 (481)
T PRK14534 85 ---KAAR--------------E------RG-----LTVYEISRFFTEAFFDDCKKLNIVYPDKVLVASEYIPIMIEVVKV 136 (481)
T ss_pred ---HHHH--------------H------cC-----CCHHHHHHHHHHHHHHHHHHcCCCCCceecCccchHHHHHHHHHH
Confidence 2221 1 12 1246789999999999999999998 45443 6778889999999
Q ss_pred HHHCCCeEeecCeEEEEec-----C-------------------------CCCCeEEEc-----CCCcccccchh----H
Q 010832 286 LSKQGLVEESQGARVIFIE-----G-------------------------VNIPLIIVK-----SDGGFNYASTD----L 326 (499)
Q Consensus 286 L~~~g~~y~~dGa~~~~~~-----g-------------------------~~~d~vl~k-----sDG~~~Y~t~D----i 326 (499)
|.++|++|+.+|.+||+++ | +..|++||| ++|.++|.+++ +
T Consensus 137 L~~kG~aY~~~~~vyFdv~~~~~YG~ls~~~l~~l~~~~~~~v~~~~~K~np~DFaLWK~~~~~~~~~~~w~spWG~GrP 216 (481)
T PRK14534 137 LEENGFTYFVNGNVYFDTSCFKSYGQMAGINLNDFKDMSVSRVEIDKSKRNKSDFVLWFTNSKFKDQEMKWDSPWGFGYP 216 (481)
T ss_pred HHHCCCEEEECCeEEEecccccchhhhcCCCHHHHhhhccCcCCcccCCCCcccchhcCcCCcCCCCCCeecCCCCCcCC
Confidence 9999999999999999874 0 124799997 47888999887 6
Q ss_pred HHHHHHHh--hcCCCeEEEEecCCccccHHHHH-HHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccHH
Q 010832 327 AALWYRLN--EEKAEWIIYVTDVGQQLHFDMVF-SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLV 403 (499)
Q Consensus 327 A~~~~k~~--~~~~d~~i~V~g~~q~~hf~~~~-~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~ 403 (499)
+||+.+.. ...+...++|++++.++.||++. .+++..+..+ .+++..|+|. |+|+ .+|+|||||.||+++++
T Consensus 217 gWHiECsam~~~~lg~~~DIH~GG~DliFPHHene~Aqs~a~~g--~~~~~~W~H~--g~l~-~~g~KMSKSlGN~i~l~ 291 (481)
T PRK14534 217 SWHLECAAMNLEYFKSTLDIHLGGVDHIGVHHINEIAIAECYLN--KKWCDMFVHG--EFLI-MEYEKMSKSNNNFITIK 291 (481)
T ss_pred cHHHHHHHHHHHHcCCcceEEecccccCCCcchhHHHHHhhhcC--CCcceEEEEe--cEEE-ecCceecccCCCcccHH
Confidence 78877631 22334568999999999999754 4554443322 2789999999 6677 46889999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhccc
Q 010832 404 DLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDK 467 (499)
Q Consensus 404 dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~ 467 (499)
||++++ ++++++||++|+.++++|++|+++.+.+..
T Consensus 292 dll~~~----------------------------~~~~alR~~lls~~yr~~l~Fs~e~l~~a~ 327 (481)
T PRK14534 292 DLEDQG----------------------------FSPLDFRYFCLTAHYRTQLKFTFNNLKACK 327 (481)
T ss_pred HHHhcC----------------------------CChhHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 999874 478899999999999999999999998773
No 15
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=100.00 E-value=4.2e-36 Score=328.77 Aligned_cols=282 Identities=17% Similarity=0.188 Sum_probs=222.5
Q ss_pred CCCcCCCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHH-HCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccc
Q 010832 121 WAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLE-FSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDAN 199 (499)
Q Consensus 121 ~~~~~~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~-~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~ 199 (499)
+.| ..+.+|.++.|+|+|++++||||+|++|..|+|+|+|+ +.||+|..+.+++|.|
T Consensus 53 f~p-~~~~~v~~Y~CGPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDid--------------------- 110 (651)
T PTZ00399 53 FVP-QNGRQVRWYTCGPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDID--------------------- 110 (651)
T ss_pred ccc-CCCCeeEEEEeCCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcc---------------------
Confidence 444 34678999999999999999999999999999999999 9999999999999964
Q ss_pred cchHHHHHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCee-eeecc-ccccC
Q 010832 200 ETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKGE-SFYNP 277 (499)
Q Consensus 200 ~~~i~~l~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~f-d~~~e-s~~~~ 277 (499)
++| ..++.+. |- ..|+++++.+...|.+++++|||.. ++.+. +.|.+
T Consensus 111 -DKI------i~~A~~~--------------------g~----~~~~el~~~~~~~f~~d~~~Lni~~p~~~~r~tehi~ 159 (651)
T PTZ00399 111 -DKI------IKRAREE--------------------KL----SIFLELARKWEKEFFEDMKALNVRPPDVITRVSEYVP 159 (651)
T ss_pred -hHH------HHHHHHh--------------------CC----CcHHHHHHHHHHHHHHHHHHcCCCCCccccCcCccHH
Confidence 322 2222211 10 1246788889999999999999998 65544 78888
Q ss_pred cHHHHHHHHHHCCCeEeecCeEEEEecC-------------------------C------------CCCeEEEcC--CCc
Q 010832 278 YIPGVIDELSKQGLVEESQGARVIFIEG-------------------------V------------NIPLIIVKS--DGG 318 (499)
Q Consensus 278 ~v~~~i~~L~~~g~~y~~dGa~~~~~~g-------------------------~------------~~d~vl~ks--DG~ 318 (499)
.|.++++.|.++|++|+.+|.|||+++. . ..||+|||. .|.
T Consensus 160 ~ii~~i~~Li~~G~aY~~~gsvyFd~~~f~~~~~~Yg~L~p~~~~~~~~~~~g~~~l~~~~~~Kr~~~DFaLWk~~kpge 239 (651)
T PTZ00399 160 EIVDFIQKIIDNGFAYESNGSVYFDVEAFRKAGHVYPKLEPESVADEDRIAEGEGALGKVSGEKRSPNDFALWKASKPGE 239 (651)
T ss_pred HHHHHHHHHHHCCCEEEECCeEEEEchhcccchhhHHhhChhhcCCHHHHhcccCCccccCcCCCCCccHHhhCCCCCCC
Confidence 9999999999999999999999998741 0 135677774 577
Q ss_pred ccccchh----HHHHHHHHh--hcCCCeEEEEecCCccccHHHHH-HHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCc
Q 010832 319 FNYASTD----LAALWYRLN--EEKAEWIIYVTDVGQQLHFDMVF-SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKR 391 (499)
Q Consensus 319 ~~Y~t~D----iA~~~~k~~--~~~~d~~i~V~g~~q~~hf~~~~-~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~K 391 (499)
|.|.|++ .+||+.+.. ..-+...++|++++.++.||++. ++++.-.+.+. ++|+..|+|++ +|. .+|+|
T Consensus 240 p~W~SpwG~GrPGWHiECsam~~~~lg~~~DIh~gG~DL~FPHHeNEiAQseA~~~~-~~~v~y~~H~G--~L~-i~G~K 315 (651)
T PTZ00399 240 PSWDSPWGKGRPGWHIECSAMASNILGDPIDIHSGGIDLKFPHHDNELAQSEAYFDK-HQWVNYFLHSG--HLH-IKGLK 315 (651)
T ss_pred CCCCCCCCCCCCCchHHHHHHHHHHcCCcceeeccCCCCCCCcchhHHHHHHHhhCC-CCCCcEEEEEE--EEE-eccch
Confidence 8888875 566766521 11122368999999999999753 45543333221 37899999994 576 57899
Q ss_pred cccccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcccCCch
Q 010832 392 LRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTA 471 (499)
Q Consensus 392 MSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~n~~ 471 (499)
||||+||+|+++|+|++ +|++++||++|+.+++++++|+++.+.+..+...
T Consensus 316 MSKSLGNfItp~dlLek-----------------------------ygaDaLR~~lLs~~~~~dldFS~e~l~~a~~~~~ 366 (651)
T PTZ00399 316 MSKSLKNFITIRQALSK-----------------------------YTARQIRLLFLLHKWDKPMNYSDESMDEAIEKDK 366 (651)
T ss_pred hhhcCCCcccHHHHHHH-----------------------------cChHHHHHHHHhcCCCCCCccCHHHHHHHHHHHH
Confidence 99999999999999998 5999999999999999999999999988766666
Q ss_pred hHHHHHHHHHHHHHHHhC
Q 010832 472 VYLLYAHARICSIIRKSG 489 (499)
Q Consensus 472 ~YlqYa~aR~~silrk~~ 489 (499)
+|.+| ++|+++++++..
T Consensus 367 ~l~n~-~~rl~s~l~~~~ 383 (651)
T PTZ00399 367 VFFNF-FANVKIKLRESE 383 (651)
T ss_pred HHHHH-HHHHHHHHhhcc
Confidence 78888 999999988643
No 16
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=100.00 E-value=1.5e-35 Score=315.41 Aligned_cols=251 Identities=18% Similarity=0.192 Sum_probs=204.6
Q ss_pred CCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHH
Q 010832 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (499)
Q Consensus 126 ~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~ 205 (499)
.+++|.++.|+|+|+|++||||+|++++.|+|+|+||+.||+|..+.+++|.|..+..-+
T Consensus 20 ~~~~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A-------------------- 79 (463)
T PRK00260 20 EPGKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRA-------------------- 79 (463)
T ss_pred CCCcceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHH--------------------
Confidence 456799999999999999999999999999999999999999999999999765432111
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCee-eeecc-ccccCcHHHHH
Q 010832 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKGE-SFYNPYIPGVI 283 (499)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~f-d~~~e-s~~~~~v~~~i 283 (499)
.+ .| ..|+++++.+.+.|.++|++|||.+ ++++. +.|.+.+.+++
T Consensus 80 --------~~--------------------~g-----~~~~e~~~~~~~~f~~~~~~Lgi~~~d~~~r~t~~~~~~~~~i 126 (463)
T PRK00260 80 --------NE--------------------EG-----ESIKELTERYIAAFHEDMDALNVLPPDIEPRATEHIPEIIELI 126 (463)
T ss_pred --------HH--------------------cC-----CCHHHHHHHHHHHHHHHHHHcCCCCCCccccccccHHHHHHHH
Confidence 10 11 1356789999999999999999965 77654 67888899999
Q ss_pred HHHHHCCCeEeecCeEEEEec-----C-----------------------CCCCeEEEcC--CCcccccchh----HHHH
Q 010832 284 DELSKQGLVEESQGARVIFIE-----G-----------------------VNIPLIIVKS--DGGFNYASTD----LAAL 329 (499)
Q Consensus 284 ~~L~~~g~~y~~dGa~~~~~~-----g-----------------------~~~d~vl~ks--DG~~~Y~t~D----iA~~ 329 (499)
++|.++|++|+.+|.+||+++ | +..||+|||. .|.+.|.+++ ++||
T Consensus 127 ~~L~~kG~aY~~~~~Vyfdv~~~~~yg~ls~~~~~~~~~~~~~~~~~~K~~~~DF~Lwk~~~~~~~~w~s~~g~grpgWh 206 (463)
T PRK00260 127 ERLIDKGHAYEADGDVYFDVRKFPDYGKLSGRNLDELQAGARVEVAEEKRDPLDFALWKAAKPGEPSWESPWGKGRPGWH 206 (463)
T ss_pred HHHHHCCCEEEecCeEEEecccccccccCCCCCHHHHhccCcCCcccCCCCccccceecCCCCCCCCCCCCCCCCCCChh
Confidence 999999999999999999875 1 1248999986 6778888775 5677
Q ss_pred HHHH--hhcCCCeEEEEecCCccccHHHHH-HHHH--H-cCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccHH
Q 010832 330 WYRL--NEEKAEWIIYVTDVGQQLHFDMVF-SAAK--R-AGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLV 403 (499)
Q Consensus 330 ~~k~--~~~~~d~~i~V~g~~q~~hf~~~~-~~~~--~-lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~ 403 (499)
+.+. ....+...++|++++.++.||++. .+++ + .| . +++..|+|. |+|. .+|+|||||+||+|++.
T Consensus 207 iecsam~~~~lg~~~Dih~gG~DlifpHh~neiaqs~a~~g-~----p~~~~w~H~--g~v~-~~G~KMSKS~GN~i~~~ 278 (463)
T PRK00260 207 IECSAMSTKYLGETFDIHGGGADLIFPHHENEIAQSEAATG-K----PFANYWMHN--GFVT-VNGEKMSKSLGNFFTIR 278 (463)
T ss_pred HHHHHHHHHhcCCCcceecCccccCCCchHhHHHHHHHhcC-C----CcceEEEEc--cEEc-cCCCcccCcCCCCCCHH
Confidence 7662 122344568899999999888764 4444 3 34 2 788999998 6787 68999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcc
Q 010832 404 DLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLND 466 (499)
Q Consensus 404 dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~ 466 (499)
|++++ +|++++||++|+.+++++++|+++.+.+.
T Consensus 279 dll~~-----------------------------~~~d~lR~~ll~~~~~~~~~fs~~~l~~a 312 (463)
T PRK00260 279 DLLKK-----------------------------YDPEVLRFFLLSAHYRSPLNFSEEALEQA 312 (463)
T ss_pred HHHHH-----------------------------cCchHhHHHHHhCCCCCCCccCHHHHHHH
Confidence 99987 59999999999999999999999987655
No 17
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.3e-35 Score=316.13 Aligned_cols=256 Identities=15% Similarity=0.165 Sum_probs=206.4
Q ss_pred CCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHH
Q 010832 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (499)
Q Consensus 126 ~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~ 205 (499)
.+++|.++.|+|+|++++||||+|++|..|+|+|+|+..||+|..+.+++|.|..|-
T Consensus 245 ~~~~V~mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII----------------------- 301 (699)
T PRK14535 245 DPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKII----------------------- 301 (699)
T ss_pred CCCceEEEecCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHH-----------------------
Confidence 467899999999999999999999999999999999999999999999999654332
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCee-eeec-cccccCcHHHHH
Q 010832 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKG-ESFYNPYIPGVI 283 (499)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~f-d~~~-es~~~~~v~~~i 283 (499)
.++.+ .| ..|+++++.+.+.|.+++++|||.. ++.+ .+.|.+.+.+++
T Consensus 302 -----~~A~e--------------------~G-----~sp~ela~~y~~~F~~d~~~LnI~~p~~~praTeHI~~ii~lI 351 (699)
T PRK14535 302 -----ARAAE--------------------NG-----ETIGELTARFIQAMHEDADALGVLRPDIEPKATENIPQMIAMI 351 (699)
T ss_pred -----HHHHH--------------------cC-----CCHHHHHHHHHHHHHHHHHHcCCCCCcEeeCccchHHHHHHHH
Confidence 22111 01 1245788899999999999999998 4444 477888999999
Q ss_pred HHHHHCCCeEee-cCeEEEEec-----C-----------------------CCCCeEEEcC--CCcccccchh----HHH
Q 010832 284 DELSKQGLVEES-QGARVIFIE-----G-----------------------VNIPLIIVKS--DGGFNYASTD----LAA 328 (499)
Q Consensus 284 ~~L~~~g~~y~~-dGa~~~~~~-----g-----------------------~~~d~vl~ks--DG~~~Y~t~D----iA~ 328 (499)
++|.++|++|+. +|.|||+++ | +..||+|||+ .|.|.|.+++ .+|
T Consensus 352 ~~LidkG~AYe~~~gsVYFdV~~f~~YG~LS~~~~~~l~~g~rve~d~~Krnp~DFaLWK~sk~Gep~W~SPWG~GRPGW 431 (699)
T PRK14535 352 ETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVDGFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGW 431 (699)
T ss_pred HHHHHCCCEEEeCCCCEEEecccccccccccCCChHHhcCCCccccccccCCccccceeccCCCCCCCccCCCCCCCCch
Confidence 999999999986 689999885 1 1258999984 6788899987 678
Q ss_pred HHHHH--hhcCCCeEEEEecCCccccHHHHH-HHHH--H-cCCCCCC-----------CCCCCcEEEEEeEEEecCCCCc
Q 010832 329 LWYRL--NEEKAEWIIYVTDVGQQLHFDMVF-SAAK--R-AGWLSAD-----------DSTYPKASHVGFGLVLGEDGKR 391 (499)
Q Consensus 329 ~~~k~--~~~~~d~~i~V~g~~q~~hf~~~~-~~~~--~-lG~~~~~-----------~~~~~~~~Hv~~g~V~~~~g~K 391 (499)
|+.+. ....+...|+|||++.++.||++. ++++ + .|....| ++++..|+|. |+|+ .+|+|
T Consensus 432 HIECSAMs~~~LG~~~DIHgGG~DLiFPHHENEiAQseA~~g~~~~~~~~~~~~~~~~~~~aryWmHn--G~V~-vdGeK 508 (699)
T PRK14535 432 HIECSAMSENLFGDTFDIHGGGADLQFPHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHN--GFIR-VDGEK 508 (699)
T ss_pred HHHHHHHHHHHcCCcceeECCccccCCCCCccHHHHHHHhhCCCcccccccccccccccccccEEEEC--CeEe-eCCCc
Confidence 88873 223445678999999999999754 4443 3 2321000 1488999999 6687 68999
Q ss_pred cccccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcc
Q 010832 392 LRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLND 466 (499)
Q Consensus 392 MSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~ 466 (499)
||||+||++++.|++++ +|++++||++|+.+++++++|+++.+.+.
T Consensus 509 MSKSLGN~it~~dlLe~-----------------------------ygpdalRl~lLsshYRspL~fS~e~Le~A 554 (699)
T PRK14535 509 MSKSLGNFFTIREVLKQ-----------------------------YDPEVVRFFILRAHYRSPLNYSDAHLDDA 554 (699)
T ss_pred cCCCCCCcCCHHHHHHh-----------------------------CCHHHHHHHHHcCCCCCCCCcCHHHHHHH
Confidence 99999999999999987 59999999999999999999999988765
No 18
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=100.00 E-value=5.3e-35 Score=310.62 Aligned_cols=270 Identities=19% Similarity=0.174 Sum_probs=210.3
Q ss_pred CCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHH
Q 010832 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (499)
Q Consensus 126 ~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~ 205 (499)
.+.+|.++.|+|+|++++||||+|+++.+|+++|+||..||+|..+.+++|.|..+..-+
T Consensus 18 ~~~~v~~yvcgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A-------------------- 77 (465)
T TIGR00435 18 VQGKVKMYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRA-------------------- 77 (465)
T ss_pred CCCcceEEEecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHH--------------------
Confidence 456899999999999999999999999999999999999999999999999766432111
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeee-ec-cccccCcHHHHH
Q 010832 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE-KG-ESFYNPYIPGVI 283 (499)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~-~~-es~~~~~v~~~i 283 (499)
.+ .| ..++++++.+.+.|.++|++|||+++. .+ .+.|.+.+.+++
T Consensus 78 --------~~--------------------~g-----~~~~e~a~~~~~~f~~dl~~LgI~~d~~~~raT~hi~~i~~~i 124 (465)
T TIGR00435 78 --------RE--------------------NG-----ESVYEVSERFIEAYFEDMKALNVLPPDLEPRATEHIDEIIEFI 124 (465)
T ss_pred --------HH--------------------cC-----CCHHHHHHHHHHHHHHHHHHhCCCCCcCCccccccHHHHHHHH
Confidence 10 01 113567899999999999999999954 43 478888999999
Q ss_pred HHHHHCCCeEeec-CeEEEEec------------------C----------CCCCeEEEcC--CCcccccchh----HHH
Q 010832 284 DELSKQGLVEESQ-GARVIFIE------------------G----------VNIPLIIVKS--DGGFNYASTD----LAA 328 (499)
Q Consensus 284 ~~L~~~g~~y~~d-Ga~~~~~~------------------g----------~~~d~vl~ks--DG~~~Y~t~D----iA~ 328 (499)
++|+++|++|+.+ |++||++. | +..|++|||+ .|.+.|.+++ .+|
T Consensus 125 ~~L~ekG~aY~~~~g~vyfdv~~~~~yG~ls~~~~~~~~~~~~~~~~~~K~~p~DF~Lwk~~~~~~~~w~spwG~grpgW 204 (465)
T TIGR00435 125 EQLIEKGYAYVSDNGDVYFDVSKFKDYGKLSKQDLDQLEAGARVDVDEAKRNKLDFVLWKSSKEGEPKWDSPWGKGRPGW 204 (465)
T ss_pred HHHHHCCCEEEecCCcEEEeccccchhccCCCCCHHHHhcccccCcccccCCCCCceeeCCCCCCCCCCcCCCCCCCCCc
Confidence 9999999999998 99999874 1 1258999985 5778888865 556
Q ss_pred HHHHH--hhcCCCeEEEEecCCccccHHHHH-HHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccHHHH
Q 010832 329 LWYRL--NEEKAEWIIYVTDVGQQLHFDMVF-SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDL 405 (499)
Q Consensus 329 ~~~k~--~~~~~d~~i~V~g~~q~~hf~~~~-~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~dl 405 (499)
|+.+. ....++..++|++++.+..||++. .+++...+.+ .+++..|+|. |+|. .+|+|||||+||+++++|+
T Consensus 205 hiecsam~~~~lg~~~Dih~gG~Dl~fpHhene~aqs~a~~g--~~~~~~~~h~--g~v~-~~g~KMSKS~GN~i~~~dl 279 (465)
T TIGR00435 205 HIECSAMNDKYLGDQIDIHGGGVDLIFPHHENEIAQSEAAFG--KQLAKYWMHN--GFLM-IDNEKMSKSLGNFFTVRDV 279 (465)
T ss_pred HhHHHHHHHHhcCCCceeeccccccccchHHHHHHHHHHhcC--CCCCcEEEEe--eEEE-ecCccccccCCCcCCHHHH
Confidence 66652 112234557899999999888764 3443222222 1678899996 7787 6899999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcccCCchhHHHHHHHHHHH
Q 010832 406 LDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICS 483 (499)
Q Consensus 406 l~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~n~~~YlqYa~aR~~s 483 (499)
+++ +|++++||++|+.+++++++|+++.+.+.. +.--.|.-++.++..
T Consensus 280 l~~-----------------------------~~~dalR~~ll~~~~~~~l~fs~~~l~~a~-~~~~rl~~~~~~~~~ 327 (465)
T TIGR00435 280 LKN-----------------------------YDPEILRYFLLSVHYRSPLDFSEELLEAAK-NALERLYKALRVLDT 327 (465)
T ss_pred HHH-----------------------------CCHHHHHHHHHhCCCCCCCccCHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 997 599999999999999999999999887764 223355555555543
No 19
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=8.1e-35 Score=299.29 Aligned_cols=257 Identities=14% Similarity=0.089 Sum_probs=203.0
Q ss_pred CCCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHH
Q 010832 125 LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIG 204 (499)
Q Consensus 125 ~~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~ 204 (499)
..|.+|.++.|+|+|++++||||+|++|..|+|+|+||.+||+|..+.+++|.|..|..-+
T Consensus 5 ~~~~~v~~YvCGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A------------------- 65 (384)
T PRK12418 5 APGGTATMYVCGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERA------------------- 65 (384)
T ss_pred CCCCeeEEEecCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHH-------------------
Confidence 3455899999999999999999999999999999999999999999999999765443221
Q ss_pred HHHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCe-eeeecc-ccccCcHHHH
Q 010832 205 ELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVD-LEEKGE-SFYNPYIPGV 282 (499)
Q Consensus 205 ~l~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~-fd~~~e-s~~~~~v~~~ 282 (499)
.+ .| ..++++++.+.+.|.+++++|||. ++.++. +.+.+.+.++
T Consensus 66 ---------~~--------------------~G-----~~~~e~a~~~~~~f~~d~~~Lni~~~~~~~raTe~i~~~~~~ 111 (384)
T PRK12418 66 ---------AR--------------------DG-----VDWRDLAEREIALFREDMEALRVLPPRDYVGAVESIPEVVEL 111 (384)
T ss_pred ---------HH--------------------cC-----CCHHHHHHHHHHHHHHHHHHhCCCCCCccccCCCCHHHHHHH
Confidence 11 01 113567888999999999999984 554443 6677889999
Q ss_pred HHHHHHCCCeEeecC----eEEEEec-----C-------------------C--------CCCeEEEcC--CCcccccch
Q 010832 283 IDELSKQGLVEESQG----ARVIFIE-----G-------------------V--------NIPLIIVKS--DGGFNYAST 324 (499)
Q Consensus 283 i~~L~~~g~~y~~dG----a~~~~~~-----g-------------------~--------~~d~vl~ks--DG~~~Y~t~ 324 (499)
+++|.++|++|+.+| .|||+++ | + +.||+|||+ .|.+.|.|+
T Consensus 112 i~~L~~kG~aY~~~~~~~~~VYFdv~~~~~YG~ls~~~~~~~~~~~~~~~~~~~~~~K~~p~DFaLWK~~~~~~~~w~sp 191 (384)
T PRK12418 112 VEKLLASGAAYVVDDEEYPDVYFSVDATPQFGYESGYDRATMLELFAERGGDPDRPGKRDPLDALLWRAARPGEPSWPSP 191 (384)
T ss_pred HHHHHHCCCEEEeCCCCCccEEEecCchhhcccccCCCHHHHHhhhcccccCcccccCCCcccceeeccCCCCCCcccCC
Confidence 999999999999988 8999874 1 0 137899985 577889988
Q ss_pred h----HHHHHHHH--hhcCCCeEEEEecCCccccHHHHH-HHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccC
Q 010832 325 D----LAALWYRL--NEEKAEWIIYVTDVGQQLHFDMVF-SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFS 397 (499)
Q Consensus 325 D----iA~~~~k~--~~~~~d~~i~V~g~~q~~hf~~~~-~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G 397 (499)
+ .+||+.+. ...-+...++|++++.++.||++. .+++...+.+. .+++..|+|. |+|. .+|+|||||+|
T Consensus 192 wG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHeneiaq~~a~~g~-~~~~~~w~H~--g~l~-~~G~KMSKSlG 267 (384)
T PRK12418 192 FGPGRPGWHIECSAIALNRLGSGFDIQGGGSDLIFPHHEFSAAHAEAATGE-RRFARHYVHA--GMIG-LDGEKMSKSRG 267 (384)
T ss_pred CCCCCChhHHHHHHHHHHHcCCCcccccCccccccchhHhHHHHHHHhcCC-CCcceEEEEC--CEEC-CCCCcccCcCC
Confidence 7 67888872 222344668999999999999764 44442222210 2789999998 5576 68999999999
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcc
Q 010832 398 EVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLND 466 (499)
Q Consensus 398 ~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~ 466 (499)
|++++.|+++.. ..+.++||++|+.+++++++|+++.+.+.
T Consensus 268 N~i~~~ell~~G----------------------------~d~~~lR~~lls~~yr~~l~fs~e~l~~a 308 (384)
T PRK12418 268 NLVFVSRLRAAG----------------------------VDPAAIRLALLAGHYRADREWTDAVLAEA 308 (384)
T ss_pred CcCCHHHHHhcc----------------------------CChhheeEEEeccCCCCCcccCHHHHHHH
Confidence 999999987642 35669999999999999999999998765
No 20
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=100.00 E-value=1.4e-34 Score=298.81 Aligned_cols=255 Identities=15% Similarity=0.102 Sum_probs=203.5
Q ss_pred CceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHH
Q 010832 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (499)
Q Consensus 127 ~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l 206 (499)
+++|.|+.|+|+|++++||||+|++|..|+|+|+||..||+|..+.+++|.|..|..-+
T Consensus 34 ~~~v~~YvCGpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A--------------------- 92 (411)
T TIGR03447 34 GPEAGMYVCGITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERA--------------------- 92 (411)
T ss_pred CCcceEEEeCCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHH---------------------
Confidence 56899999999999999999999999999999999999999999999999765443221
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCe-eeeec-cccccCcHHHHHH
Q 010832 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVD-LEEKG-ESFYNPYIPGVID 284 (499)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~-fd~~~-es~~~~~v~~~i~ 284 (499)
.+ +| ..++++++.+...|.+++++|||. ++.++ -+.+.+.+.++++
T Consensus 93 -------~~--------------------~g-----~t~~ela~~y~~~f~~d~~~Lni~~~d~~~RaTe~i~~ii~~i~ 140 (411)
T TIGR03447 93 -------ER--------------------DG-----VDWRELGTSQIDLFREDMEALRVLPPRDYIGAVESIDEVIEMVE 140 (411)
T ss_pred -------HH--------------------cC-----CCHHHHHHHHHHHHHHHHHHcCCCCCCcccCCCCCHHHHHHHHH
Confidence 11 01 113567888999999999999987 45433 3666788999999
Q ss_pred HHHHCCCeEeecC----eEEEEec-----C----------------------C-----CCCeEEEcC--CCcccccchh-
Q 010832 285 ELSKQGLVEESQG----ARVIFIE-----G----------------------V-----NIPLIIVKS--DGGFNYASTD- 325 (499)
Q Consensus 285 ~L~~~g~~y~~dG----a~~~~~~-----g----------------------~-----~~d~vl~ks--DG~~~Y~t~D- 325 (499)
+|.++|++|+.+| .|||+++ | + ..||+|||+ .|.+.|.|++
T Consensus 141 ~L~~kG~aY~~~~~~~~~VYFdv~~~~~YG~Ls~~~~~~~~~~~~~~~~~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG 220 (411)
T TIGR03447 141 KLLAAGAAYEVEGPEYPDVYFSIEATEQFGYESGYDRATMLELFAERGGDPDRPGKRDPLDALLWRAAREGEPSWDSPFG 220 (411)
T ss_pred HHHHCCCEEecCCCCcCcEEEeccchhccccccCCCHHHHHhhhcccccCcccccCCCCcccceeCCCCCCCCCccCCCC
Confidence 9999999999887 7999874 1 0 137899984 6778898886
Q ss_pred ---HHHHHHHH--hhcCCCeEEEEecCCccccHHHHH-HHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCc
Q 010832 326 ---LAALWYRL--NEEKAEWIIYVTDVGQQLHFDMVF-SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEV 399 (499)
Q Consensus 326 ---iA~~~~k~--~~~~~d~~i~V~g~~q~~hf~~~~-~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~ 399 (499)
.+||+.+. ....+...|+|++++.++.||++. .+++.....+. .+++..|+|. |+|. .+|+|||||+||+
T Consensus 221 ~GRPGWHiECsam~~~~lg~~~Dih~GG~DLifpHheneiaq~~A~~g~-~~~~~~w~H~--g~l~-~~G~KMSKSlGN~ 296 (411)
T TIGR03447 221 PGRPGWHIECSAIATNRLGAGFDIQGGGSDLIFPHHEFSAAHAEAATGV-RRMARHYVHA--GMIG-LDGEKMSKSLGNL 296 (411)
T ss_pred CCCChhHHHHHHHHHHHcCCceecccCcccccccchHhHHHHHHHhcCC-CCcceEEEEC--CEEC-cCCCCccCcCCCC
Confidence 67888872 222345678999999999999764 45543332221 2789999998 6676 6899999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcc
Q 010832 400 VRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLND 466 (499)
Q Consensus 400 v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~ 466 (499)
++++|+++.. .+++++||++|+.+++++++|+++.+.+.
T Consensus 297 i~~~dl~~~g----------------------------~dp~~lRl~lls~~Yr~pl~fs~e~l~~a 335 (411)
T TIGR03447 297 VFVSKLRAAG----------------------------VDPAAIRLGLLAGHYRQDRDWTDAVLAEA 335 (411)
T ss_pred CCHHHHHhcC----------------------------CCcccEEEEEecCCCCCCCccCHHHHHHH
Confidence 9999987652 47789999999999999999999988775
No 21
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=6.9e-31 Score=267.31 Aligned_cols=258 Identities=16% Similarity=0.157 Sum_probs=203.0
Q ss_pred CCCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHH-HCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchH
Q 010832 125 LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLE-FSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAI 203 (499)
Q Consensus 125 ~~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~-~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i 203 (499)
..+++|-.+.|+|+++..-||||+|++|-.|+|.|+|+ +.||+|+.+++|+|. +|.|
T Consensus 51 ~~~~~v~wY~CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDV----------------------DDKI 108 (586)
T KOG2007|consen 51 NNGNKVTWYICGPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDV----------------------DDKI 108 (586)
T ss_pred CCCCeEEEEEecCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccch----------------------hHHH
Confidence 35778999999999999999999999999999999999 999999999999993 3432
Q ss_pred HHHHHHHHHHh-cccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCee-eeecc-ccccCcHH
Q 010832 204 GELQEFYRRSK-NRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKGE-SFYNPYIP 280 (499)
Q Consensus 204 ~~l~~~y~~~~-~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~f-d~~~e-s~~~~~v~ 280 (499)
++++. +.+...| ..|.+.-..+.+.|.+++.+|+|-. +..+. |.|.+.|.
T Consensus 109 ------I~RAr~~~m~e~~---------------------~~l~~~F~~~e~eF~~DM~~LnvLpPtv~tRVSeyvp~II 161 (586)
T KOG2007|consen 109 ------IKRARKEEMGEKP---------------------LSLSERFCYYEEEFLQDMAALNVLPPTVQTRVSEYVPQII 161 (586)
T ss_pred ------HHHhhhhhhccch---------------------hhHHHHHHHHHHHHHHHHHHhCCCCCcccchhhhchHHHH
Confidence 33332 1111111 2343332367789999999999987 65555 88889999
Q ss_pred HHHHHHHHCCCeEeecCeEEEEec----------CC------------------CCCeEEEcC--CCcccccchh----H
Q 010832 281 GVIDELSKQGLVEESQGARVIFIE----------GV------------------NIPLIIVKS--DGGFNYASTD----L 326 (499)
Q Consensus 281 ~~i~~L~~~g~~y~~dGa~~~~~~----------g~------------------~~d~vl~ks--DG~~~Y~t~D----i 326 (499)
.+|++++++|++|..+|.|||++. |+ ..||.|||+ .|.|.|-+++ .
T Consensus 162 ~fIqkIIdnG~aY~~dGsVYFdv~kf~~~YgKL~G~~~~~~~gEg~l~ds~KR~p~DFALWKAsK~gEP~WeSPWG~GRP 241 (586)
T KOG2007|consen 162 KFIQKIIDNGYAYAVDGSVYFDVDKFPHSYGKLVGQRKNLQEGEGVLSDSRKRSPADFALWKASKPGEPSWESPWGKGRP 241 (586)
T ss_pred HHHHHHHhCCceeeeCCcEEEecccccchhhhhcCchhhcccCcCccccccCCChhhhhhhhhcCCCCCCCCCCCCCCCC
Confidence 999999999999999999999985 10 237889974 7899999987 6
Q ss_pred HHHHHHHh--hcCCCeEEEEecCCccccHHHHH-HHHHHcC-CCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccH
Q 010832 327 AALWYRLN--EEKAEWIIYVTDVGQQLHFDMVF-SAAKRAG-WLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRL 402 (499)
Q Consensus 327 A~~~~k~~--~~~~d~~i~V~g~~q~~hf~~~~-~~~~~lG-~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l 402 (499)
+||+.+.. .--+...++||+++-++-||++. ++++.-. +.. ..|+.+|.|. |.+. .+|+|||||.+|++|+
T Consensus 242 GWHIECSaMas~~lG~~lDIH~GG~DL~FPHHeNEiAQ~eA~~~~--~~wVnYflHt--GhL~-i~g~KMSKSLkNFiTI 316 (586)
T KOG2007|consen 242 GWHIECSAMASAILGSQLDIHGGGIDLAFPHHENEIAQSEAAFDD--SQWVNYFLHT--GHLT-INGEKMSKSLKNFITI 316 (586)
T ss_pred CceeeeHHHHHHhhccccceecCcccccCCCcccHHHHHHHHhcC--CccceeEEEc--Ceee-eccchhhhhhccceeH
Confidence 78877632 22334568899999999999763 4554222 221 2589999999 6677 5689999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhc
Q 010832 403 VDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLN 465 (499)
Q Consensus 403 ~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~ 465 (499)
+|+|+. +.|.++|+++|..+++++++|+-..|..
T Consensus 317 ke~Lk~-----------------------------~sp~qLRl~fl~~~wr~~ldYs~s~m~~ 350 (586)
T KOG2007|consen 317 KEALKK-----------------------------YSPRQLRLAFLLHQWRSPLDYSDSTMEQ 350 (586)
T ss_pred HHHHHh-----------------------------cCHHHHHHHHHHHHhcCcCCchHHHHHH
Confidence 999987 5899999999999999999999885543
No 22
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=99.95 E-value=1.2e-26 Score=251.17 Aligned_cols=269 Identities=17% Similarity=0.161 Sum_probs=191.7
Q ss_pred ceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHHH
Q 010832 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (499)
Q Consensus 128 ~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (499)
++++|..+-|+|+|++||||+|+.++.|+++|+++..|++|..+.+++|+|.++..-+.. .+
T Consensus 1 ~~~~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~-----------~g------- 62 (511)
T PRK11893 1 KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEE-----------AG------- 62 (511)
T ss_pred CCEEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHH-----------cC-------
Confidence 468899999999999999999999999999999999999999999999998865422211 00
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeee-cc--ccccCcHHHHHH
Q 010832 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK-GE--SFYNPYIPGVID 284 (499)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~-~e--s~~~~~v~~~i~ 284 (499)
. + .+++++.+...|++++++|||.+|.+ .. ..|.+.+.++++
T Consensus 63 -----------~------------------~------~~~~~~~~~~~~~~~l~~l~I~~D~~~~t~~~~~~~~v~~~~~ 107 (511)
T PRK11893 63 -----------I------------------S------PQELADRNSAAFKRLWEALNISYDDFIRTTDPRHKEAVQEIFQ 107 (511)
T ss_pred -----------C------------------C------HHHHHHHHHHHHHHHHHHhCCCcCCceeCCCHHHHHHHHHHHH
Confidence 1 1 13567888899999999999999743 33 346788999999
Q ss_pred HHHHCCCeEeecCeEEEEec------------------------------------------------C-----------
Q 010832 285 ELSKQGLVEESQGARVIFIE------------------------------------------------G----------- 305 (499)
Q Consensus 285 ~L~~~g~~y~~dGa~~~~~~------------------------------------------------g----------- 305 (499)
+|.++|++|+.++.+|+... +
T Consensus 108 ~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~~~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~ 187 (511)
T PRK11893 108 RLLANGDIYLGKYEGWYCVRCEEFYTESELIEDGYRCPPTGAPVEWVEEESYFFRLSKYQDKLLELYEANPDFIQPASRR 187 (511)
T ss_pred HHHHCCCEEEeeeeeeccccccccCCHHHhcCCCCCCCCCCCcceEEecCeEEEEcHHHHHHHHHHHHhCCCccCCHHHH
Confidence 99999999987665444321 0
Q ss_pred ---------CCCCeEEEcCCCc--------c-----cccchhHHHHHH------------HHhh-cCCCeEEEEecCCcc
Q 010832 306 ---------VNIPLIIVKSDGG--------F-----NYASTDLAALWY------------RLNE-EKAEWIIYVTDVGQQ 350 (499)
Q Consensus 306 ---------~~~d~vl~ksDG~--------~-----~Y~t~DiA~~~~------------k~~~-~~~d~~i~V~g~~q~ 350 (499)
...|+.|.|++.. . +|+..=++|..- .+.. +..| +++.|.|+.
T Consensus 188 ~~~~~~l~~~~~D~~isR~~~~WGipiP~~~~~~~~vWfda~~~y~s~~~~p~~~~~~~~~~~~~~~~D--~~~~G~D~~ 265 (511)
T PRK11893 188 NEVISFVKSGLKDLSISRTNFDWGIPVPGDPKHVIYVWFDALTNYLTALGYPDDEELLAELFNKYWPAD--VHLIGKDIL 265 (511)
T ss_pred HHHHHHHHCCCCCcccCCCCCCCCccCCCCCCceEEEEecCcHHHHhHhccccccccchhHHHhcCCCc--ceEeccccc
Confidence 0124445552211 1 232211222100 0111 2223 355666653
Q ss_pred c-cHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHH
Q 010832 351 L-HFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEE 429 (499)
Q Consensus 351 ~-hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~ 429 (499)
. |.-...+++.++|+ ++...+.|. |+|+. +|+|||||+||+|++.|++++
T Consensus 266 ~~h~~~~~a~~~a~~~-----~~p~~~~~~--g~v~~-~G~KMSKS~GN~i~~~dll~~--------------------- 316 (511)
T PRK11893 266 RFHAVYWPAFLMAAGL-----PLPKRVFAH--GFLTL-DGEKMSKSLGNVIDPFDLVDE--------------------- 316 (511)
T ss_pred ccchhHHHHHHHhCCC-----CCCCEEEee--ccEEE-CCeeecccCCcEEcHHHHHHH---------------------
Confidence 3 22223344555565 344666665 77884 799999999999999999998
Q ss_pred HHHHHHHHhhhhHHHHHhhcCC-CCCCccccHHHHhc-ccCCchhHHHHHHHHHHHHHHHh
Q 010832 430 ELEQTAEAVGYGAAKYFDLKNN-RLTNYTFSFDQMLN-DKGNTAVYLLYAHARICSIIRKS 488 (499)
Q Consensus 430 ~~~~~a~~vg~~airy~~L~~~-~~~~~~Fd~~~~~~-~~~n~~~YlqYa~aR~~silrk~ 488 (499)
+|++++||++++.. ..++++|+++.+.. .+++...++++.+.|+.+++++.
T Consensus 317 --------~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~ 369 (511)
T PRK11893 317 --------YGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGNLAQRTLSMIAKN 369 (511)
T ss_pred --------cCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 59999999999984 58999999999865 45667789999999999999875
No 23
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.95 E-value=8.4e-27 Score=223.40 Aligned_cols=195 Identities=17% Similarity=0.174 Sum_probs=150.7
Q ss_pred CCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHH
Q 010832 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (499)
Q Consensus 126 ~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~ 205 (499)
.++++.++.|+|+|++++||||+|+.++.|+++|++|..|++|....+++|.|.++..-++.
T Consensus 17 ~~~~~~~y~~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~------------------ 78 (213)
T cd00672 17 NPGLVTMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRARE------------------ 78 (213)
T ss_pred CCCCceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHH------------------
Confidence 45778999999999999999999999999999999999999999999999988765433211
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCee-eeeccccccCcHHHHHH
Q 010832 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKGESFYNPYIPGVID 284 (499)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~f-d~~~es~~~~~v~~~i~ 284 (499)
.| ..++++++.+.+.|++++++|||++ |.++..
T Consensus 79 ------------------------------~g-----~~p~e~~~~~~~~f~~~~~~l~i~~~d~~~rt----------- 112 (213)
T cd00672 79 ------------------------------EG-----LSWKEVADYYTKEFFEDMKALNVLPPDVVPRV----------- 112 (213)
T ss_pred ------------------------------cC-----CCHHHHHHHHHHHHHHHHHHcCCCCCCcceee-----------
Confidence 00 1135678888899999999999998 654333
Q ss_pred HHHHCCCeEeecCeEEEEecCCCCCeEEEcCCCcccccchhHHHHHHHHhhcCCCeEEEEecCCccccHHHHH-HHHHHc
Q 010832 285 ELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVF-SAAKRA 363 (499)
Q Consensus 285 ~L~~~g~~y~~dGa~~~~~~g~~~d~vl~ksDG~~~Y~t~DiA~~~~k~~~~~~d~~i~V~g~~q~~hf~~~~-~~~~~l 363 (499)
|... |++...++ +...++|++++.+..|+++. .+++..
T Consensus 113 ------------------------------------Wh~e-c~am~~~~----lg~~~dih~~G~Dl~fpH~~~~~a~~~ 151 (213)
T cd00672 113 ------------------------------------WHIE-CSAMAMKY----LGETFDIHGGGVDLIFPHHENEIAQSE 151 (213)
T ss_pred ------------------------------------hhHH-HHHHHHHH----cCCCccEEeecCCCCcChHHHHHHHHH
Confidence 4333 33333333 23456788898888888654 333322
Q ss_pred CCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHH
Q 010832 364 GWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAA 443 (499)
Q Consensus 364 G~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~ai 443 (499)
...+. +++..|.|. |+|. .+|+|||||+||+++++|++++ +|++++
T Consensus 152 a~~g~--~~~~~~~h~--~~v~-~~g~KMSKs~Gn~v~~~dll~~-----------------------------~~~da~ 197 (213)
T cd00672 152 AATGK--PFARYWLHT--GHLT-IDGEKMSKSLGNFITVRDALKK-----------------------------YDPEVL 197 (213)
T ss_pred HHhCC--CCCcEEEEE--EEEe-ccCcchhhcCCCccCHHHHHHH-----------------------------cCHHHH
Confidence 21111 578899998 7787 6788999999999999999987 599999
Q ss_pred HHHhhcCCCCCCcccc
Q 010832 444 KYFDLKNNRLTNYTFS 459 (499)
Q Consensus 444 ry~~L~~~~~~~~~Fd 459 (499)
||++|+.+++++++||
T Consensus 198 R~~~l~~~~~~~l~f~ 213 (213)
T cd00672 198 RLALLSSHYRSPLDFS 213 (213)
T ss_pred HHHHHhCCcCCCCCCC
Confidence 9999999999999997
No 24
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=99.94 E-value=9.2e-26 Score=229.46 Aligned_cols=255 Identities=16% Similarity=0.124 Sum_probs=177.8
Q ss_pred eEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHHHH
Q 010832 129 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 208 (499)
Q Consensus 129 ~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l~~ 208 (499)
+++|....|||+|++||||+|+.++.|+++|+++..|++|..+..++|+|..+...++.. ....
T Consensus 1 ~~~i~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~----~~~~------------ 64 (312)
T cd00668 1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERK----GGRK------------ 64 (312)
T ss_pred CEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHh----cCcc------------
Confidence 367889999999999999999999999999999999999999999999998877554321 0000
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeee---c--cccccCcHHHHH
Q 010832 209 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK---G--ESFYNPYIPGVI 283 (499)
Q Consensus 209 ~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~---~--es~~~~~v~~~i 283 (499)
....+ . .+..+.++++++.+.+.|++++++|||.+||. . +..|.+.+.+++
T Consensus 65 --------~~~~~------~----------~~~~~~~~~~~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f 120 (312)
T cd00668 65 --------KKTIW------I----------EEFREDPKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIF 120 (312)
T ss_pred --------ccccc------H----------HHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHH
Confidence 00011 0 01123456789999999999999999999842 1 234667899999
Q ss_pred HHHHHCCCeEe------ecCeEEEEec------------C----------------CCCCeEEEcC--CCc--c---ccc
Q 010832 284 DELSKQGLVEE------SQGARVIFIE------------G----------------VNIPLIIVKS--DGG--F---NYA 322 (499)
Q Consensus 284 ~~L~~~g~~y~------~dGa~~~~~~------------g----------------~~~d~vl~ks--DG~--~---~Y~ 322 (499)
++|.++|++|+ .+..+|++++ + ...|+.|.|. =|. | .|.
T Consensus 121 ~~L~~~G~iY~~~~~v~~~~~~f~~~~~l~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~d~~isR~~~WG~~~P~~~i~~ 200 (312)
T cd00668 121 SRLYEKGLIYRGTHPVRITEQWFFDMPKFKEKLLKALRRGKIVPEHVKNRMEAWLESLLDWAISRQRYWGTPLPEDVFDV 200 (312)
T ss_pred HHHHHCCCEEeecceeEeeeeEEEEcHHHHHHHHHHHhcCCcCChHHHHHHHHHHhCCCCeEEeccCCCCCcCCcccccc
Confidence 99999999999 4455566653 1 1125556553 122 1 222
Q ss_pred --chhHHHHHH-HH--h----hcCCCeEEEEecCCcc-ccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCcc
Q 010832 323 --STDLAALWY-RL--N----EEKAEWIIYVTDVGQQ-LHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRL 392 (499)
Q Consensus 323 --t~DiA~~~~-k~--~----~~~~d~~i~V~g~~q~-~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KM 392 (499)
..=++|... .. . .......|++.|.||. .|+..+.+++.+++... ++...+.| |+|+..+|+||
T Consensus 201 Wfds~~~~~~~~~~~~~~~~~~~~~~~di~~~G~D~~~~h~~~~~~~~~~~~~~~---~~~~~~~~---g~~~~~~g~Km 274 (312)
T cd00668 201 WFDSGIGPLGSLGYPEEKEWFKDSYPADWHLIGKDILRGWANFWITMLVALFGEI---PPKNLLVH---GFVLDEGGQKM 274 (312)
T ss_pred hhhccHHHHHHcCCCccchhhhhcCCceEEEEecchhhhHHHHHHHHHHHhcCCC---CcceeEEC---cEEEcCCCccc
Confidence 111222111 00 0 0001235889999997 78888888888777531 34444444 78987777999
Q ss_pred ccccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCC-CCCCccc
Q 010832 393 RTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNN-RLTNYTF 458 (499)
Q Consensus 393 SkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~-~~~~~~F 458 (499)
|||+||+|+++|++++ +|++++||++++.+ +.++.+|
T Consensus 275 SKS~gn~v~~~d~~~~-----------------------------~~~da~R~~l~~~~~~~~d~~~ 312 (312)
T cd00668 275 SKSKGNVIDPSDVVEK-----------------------------YGADALRYYLTSLAPYGDDIRL 312 (312)
T ss_pred cccCCCcCCHHHHHHH-----------------------------cCcHHHHHHHHhcCCccCCCCC
Confidence 9999999999999988 59999999999887 4566554
No 25
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.93 E-value=2.2e-25 Score=226.68 Aligned_cols=242 Identities=18% Similarity=0.160 Sum_probs=170.3
Q ss_pred eEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHHHH
Q 010832 129 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 208 (499)
Q Consensus 129 ~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l~~ 208 (499)
|++|...-|+|+|++||||+|+.+++|+++|++|..|++|..+.+++|+|.++...+... +
T Consensus 1 k~~it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~-----------g-------- 61 (314)
T cd00812 1 KFYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKI-----------G-------- 61 (314)
T ss_pred CeEEecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHc-----------C--------
Confidence 478889999999999999999999999999999999999999999999988665332110 0
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeecc-----ccccCcHHHHH
Q 010832 209 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPGVI 283 (499)
Q Consensus 209 ~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~~e-----s~~~~~v~~~i 283 (499)
. + .+++++.+.+.|++++++|||++||... ..|...+.+++
T Consensus 62 ----------~------------------~------~~e~~~~~~~~~~~~~~~lgi~~d~~~~~~t~~~~~~~~v~~~f 107 (314)
T cd00812 62 ----------R------------------D------PEDWTEYNIKKMKEQLKRMGFSYDWRREFTTCDPEYYKFTQWLF 107 (314)
T ss_pred ----------C------------------C------HHHHHHHHHHHHHHHHHHhccceecccccccCCHHHHHHHHHHH
Confidence 0 1 2456888899999999999999986321 23455678888
Q ss_pred HHHHHCCCeEeecCeEEEE---------e--c------------CCC-C--------Ce-EEEc--CCCccc------cc
Q 010832 284 DELSKQGLVEESQGARVIF---------I--E------------GVN-I--------PL-IIVK--SDGGFN------YA 322 (499)
Q Consensus 284 ~~L~~~g~~y~~dGa~~~~---------~--~------------g~~-~--------d~-vl~k--sDG~~~------Y~ 322 (499)
.+|.++|++|+.++.+++. + + ... + .. -+.| .=|.+. |.
T Consensus 108 ~~L~~~G~iy~~~~~v~~~~~~~~~f~~l~~~~~~~~l~~~l~~~~~~p~~~~~~~~~~l~isR~~~wGipvP~~~~i~~ 187 (314)
T cd00812 108 LKLYEKGLAYKKEAPVNWCKLLDQWFLKYSETEWKEKLLKDLEKLDGWPEEVRAMQENWIGCSRQRYWGTPIPWTDTMES 187 (314)
T ss_pred HHHHHCCCEEecCceeeeeCccceEEEEcCcHHHHHHHHHHHHhcCcCCHHHHHHHHHHheeeeecCCcCCcCccccccc
Confidence 9999999999988777664 2 1 000 0 00 0111 113221 22
Q ss_pred chhH-----HHH----------------HHHHhhc-CCCeEEEEecCCc---c-ccHHHHHHHHHHcCCCCCCCCCCCcE
Q 010832 323 STDL-----AAL----------------WYRLNEE-KAEWIIYVTDVGQ---Q-LHFDMVFSAAKRAGWLSADDSTYPKA 376 (499)
Q Consensus 323 t~Di-----A~~----------------~~k~~~~-~~d~~i~V~g~~q---~-~hf~~~~~~~~~lG~~~~~~~~~~~~ 376 (499)
..|- .|. ...+..+ ..| ++|+|.|| + .|+..+.+++..+|+.. .++...+
T Consensus 188 w~ds~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~w~p~d--i~v~G~D~i~~h~~~~~~~~~~l~~~g~~~--~~~~~~~ 263 (314)
T cd00812 188 LSDSTWYYARYTDAHNLEQPYEGDLEFDREEFEYWYPVD--IYIGGKEHAPNHLLYSRFNHKALFDEGLVT--DEPPKGL 263 (314)
T ss_pred ccccHHHHHHHHhcccccCcchhhhhhhHHHHHHhCCCe--eeecchhHHHHHHHHHHHHHHHHcCccccc--ccCcHHh
Confidence 2221 111 0111122 233 89999998 4 44456667777777510 0123344
Q ss_pred EEEEeEEEecCCCCccccccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCc
Q 010832 377 SHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNY 456 (499)
Q Consensus 377 ~Hv~~g~V~~~~g~KMSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~ 456 (499)
.+ +|+|+. +|+|||||+||+|+++|++++ +|++++||++++..+ +++
T Consensus 264 ~~--~g~v~~-~g~KmSkS~Gn~v~~~dll~~-----------------------------~~~Da~R~~ll~~~~-~~~ 310 (314)
T cd00812 264 IV--QGMVLL-EGEKMSKSKGNVVTPDEAIKK-----------------------------YGADAARLYILFAAP-PDA 310 (314)
T ss_pred ee--cceEec-CccccCCcCCCCCCHHHHHHH-----------------------------hCcHHHHHHHHhcCC-cCC
Confidence 43 488984 799999999999999999998 489999999999988 999
Q ss_pred cccH
Q 010832 457 TFSF 460 (499)
Q Consensus 457 ~Fd~ 460 (499)
+|||
T Consensus 311 ~f~~ 314 (314)
T cd00812 311 DFDW 314 (314)
T ss_pred CCCC
Confidence 9987
No 26
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.93 E-value=2.2e-24 Score=220.18 Aligned_cols=258 Identities=17% Similarity=0.207 Sum_probs=174.8
Q ss_pred ceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCC-CccccchHHHH
Q 010832 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNS-EDANETAIGEL 206 (499)
Q Consensus 128 ~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~-~~~~~~~i~~l 206 (499)
.+++| -|+..|+|++||||+|..+.+|+++|.||.+|++|..++..+|+|. +.++-..+ ++. ..+.+.++..+
T Consensus 19 ~~~~v-~tgi~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~-lrKvp~~l----~~~~~~~~G~pi~~i 92 (353)
T cd00674 19 EKYVV-ASGISPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDR-LRKVPPNV----PESYEQYIGMPLSSV 92 (353)
T ss_pred CeEEE-ecCCCCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCc-ccccccch----hhHHHHhcCccchhc
Confidence 45777 5566799999999999999999999999999999999999999975 22210000 000 00112222211
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeecc-ccc-cCc-HHHHH
Q 010832 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-SFY-NPY-IPGVI 283 (499)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~~e-s~~-~~~-v~~~i 283 (499)
++| .|- . ..+++.+...|++.+++|||++++.+. ..| ++. .+.+.
T Consensus 93 ------------p~p--------------~g~---~---~~~~d~~~~~f~~~l~~lgi~~d~~~~T~~y~~g~~~~~i~ 140 (353)
T cd00674 93 ------------PDP--------------FGC---C---ESYAEHFERPFEESLEKLGIEVEFISQSQMYKSGLYDENIL 140 (353)
T ss_pred ------------hhh--------------cCC---C---HHHHHHHHHHHHHHHHHcCCeeeeeecCCchhhchHHHHHH
Confidence 111 011 1 246888999999999999999986543 344 433 56677
Q ss_pred HHHHHCCCeEe--------ecCeEEEEec------CCCCCeEE-EcC-CCcccccchhHHH------------HHHHHhh
Q 010832 284 DELSKQGLVEE--------SQGARVIFIE------GVNIPLII-VKS-DGGFNYASTDLAA------------LWYRLNE 335 (499)
Q Consensus 284 ~~L~~~g~~y~--------~dGa~~~~~~------g~~~d~vl-~ks-DG~~~Y~t~DiA~------------~~~k~~~ 335 (499)
..|.+++.+.+ +-..-|+... |.....|+ +.. .|+.+|.+. +++ ..||. .
T Consensus 141 ~~L~~~~~I~~i~~~~~~~~~~~~~~P~~p~c~~cg~~~~~v~~~d~~~~~v~y~c~-cG~~g~~~~~~g~~KL~Wr~-d 218 (353)
T cd00674 141 IALEKRDEIMAILNEYRGRELQETWYPFMPYCEKCGKDTTTVEAYDAKAGTVTYKCE-CGHEETVDIRTGRGKLTWRV-D 218 (353)
T ss_pred HHHHHCChHHHHHHHhcCCccCCCceeeeeecCCcCcceeEEEEEeCCCCeEEEEcC-CCCEEEEeecCCCcccCCCC-C
Confidence 77887776552 1112244332 42222222 222 345677653 221 12332 1
Q ss_pred cCC-----CeEEEEecCCcccc---HHHHHHHHH-HcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccHHHHH
Q 010832 336 EKA-----EWIIYVTDVGQQLH---FDMVFSAAK-RAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLL 406 (499)
Q Consensus 336 ~~~-----d~~i~V~g~~q~~h---f~~~~~~~~-~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~dll 406 (499)
|.. +--+-++|.||..+ |.++.++++ .+|+.+ + .|+.||+|+..+|+|||||+||+|+++|+|
T Consensus 219 W~~rW~~l~Vd~E~~GkDh~~~ggs~~~~~~i~~~ilg~~~------P--~~~~ye~V~l~gg~KMSKSkGnvI~~~dll 290 (353)
T cd00674 219 WPMRWAILGVDFEPFGKDHASAGGSYDTGKEIAREIFGGEP------P--VPVMYEFIGLKGGGKMSSSKGNVITPSDWL 290 (353)
T ss_pred chhhhhhcCCCEEeeCccccccccHHHHHHHHHHHHhCCCC------C--eEEEeeeEEeCCCCccCCCCCCcCCHHHHH
Confidence 211 22366899999999 999999998 999852 2 567889999776779999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCC-CCCCccccHHH
Q 010832 407 DEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNN-RLTNYTFSFDQ 462 (499)
Q Consensus 407 ~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~-~~~~~~Fd~~~ 462 (499)
++ ++++++||++++.. +.++++||++.
T Consensus 291 ~~-----------------------------~~~dalR~~~l~~~~~~~~i~Fd~~~ 318 (353)
T cd00674 291 EV-----------------------------APPEVLRYLYARRKNPEKHIGFDLDI 318 (353)
T ss_pred HH-----------------------------hChHHHHHHHHhCCCCCCCCCcChhH
Confidence 98 48999999999988 88999999964
No 27
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=99.92 E-value=5.8e-24 Score=231.18 Aligned_cols=267 Identities=19% Similarity=0.234 Sum_probs=182.8
Q ss_pred EEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHHHHHH
Q 010832 131 VVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFY 210 (499)
Q Consensus 131 ~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l~~~y 210 (499)
+|.-+-|||+|++||||+|+.++.|+|+|++|..|++|..+..++|+|..+...+..
T Consensus 2 ~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~----------------------- 58 (530)
T TIGR00398 2 LITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQ----------------------- 58 (530)
T ss_pred EEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHH-----------------------
Confidence 577889999999999999999999999999999999999999999988755422210
Q ss_pred HHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeec---cccccCcHHHHHHHHH
Q 010832 211 RRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG---ESFYNPYIPGVIDELS 287 (499)
Q Consensus 211 ~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~~---es~~~~~v~~~i~~L~ 287 (499)
... + ++++++.+.+.|+++|++|||++|++. ++.|.+.+.+++++|.
T Consensus 59 ------~g~------------------~------~~e~~~~~~~~~~~~l~~LgI~~D~~~~t~~~~~~~~v~~~~~~L~ 108 (530)
T TIGR00398 59 ------EGL------------------T------PKELVDKYHEEFKDDWKWLNISFDRFIRTTDEEHKEIVQKIFQKLK 108 (530)
T ss_pred ------cCC------------------C------HHHHHHHHHHHHHHHHHHhCCCCCCCccCCCHHHHHHHHHHHHHHH
Confidence 001 1 245788899999999999999997543 4557788999999999
Q ss_pred HCCCeEeecCeEEEEec-----------CC----------------------------------C---------------
Q 010832 288 KQGLVEESQGARVIFIE-----------GV----------------------------------N--------------- 307 (499)
Q Consensus 288 ~~g~~y~~dGa~~~~~~-----------g~----------------------------------~--------------- 307 (499)
++|++|+.++.+++... |. +
T Consensus 109 ~kG~iY~~~~~v~~~~~~~~~l~~~~v~g~cp~c~~~~~~g~~ce~cg~~~~~~~l~~p~~~~~~~~~e~~~~~~~f~~l 188 (530)
T TIGR00398 109 ENGYIYEKEIKQLYCPECEMFLPDRYVEGTCPKCGSEDARGDHCEVCGRHLEPTELINPRCKICGAKPELRDSEHYFFRL 188 (530)
T ss_pred HCCCEEEeeeEEEecCCCCcCCchhhhcCCCCCCCCcccccchhhhccccCCHHHhcCCccccCCCcceEEecceEEEEh
Confidence 99999988766666432 00 0
Q ss_pred ------------------------------------CCeEEEc-CC--C--------cccccchh--HHHHH---H----
Q 010832 308 ------------------------------------IPLIIVK-SD--G--------GFNYASTD--LAALW---Y---- 331 (499)
Q Consensus 308 ------------------------------------~d~vl~k-sD--G--------~~~Y~t~D--iA~~~---~---- 331 (499)
.|.-|-| .+ | ...|.--| ++|.. +
T Consensus 189 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~iSR~~~~WGipvP~~~~~~~yvW~da~~~y~~~~~~~~~~ 268 (530)
T TIGR00398 189 SAFEKELEEWIRKNPESGSPASNVKNKAQNWLKGGLKDLAITRDLVYWGIPVPNDPNKVVYVWFDALIGYISSLGILSGD 268 (530)
T ss_pred HHHHHHHHHHHHhCCccCCCcHHHHHHHHHHHhCCCCCccccCcCCCCCeeCCCCCCcEEEEeecchHHhHhhhccccCC
Confidence 0000000 00 0 01111111 11110 0
Q ss_pred --HHh-hcCC---CeEEEEecCCccccHHHHH--HHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccHH
Q 010832 332 --RLN-EEKA---EWIIYVTDVGQQLHFDMVF--SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLV 403 (499)
Q Consensus 332 --k~~-~~~~---d~~i~V~g~~q~~hf~~~~--~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~ 403 (499)
.+. .|.. ..++.+.|.|.. .|..++ +++.++|+. +.. .|+.+|+|+.+ |+|||||+||+|+++
T Consensus 269 ~~~~~~~w~~~~~~~~v~~~G~Di~-~~h~~~~~a~l~~~~~~-----~~~--~~~~~g~v~~~-g~KmSKS~Gn~i~~~ 339 (530)
T TIGR00398 269 TEDWKKWWNNDEDAELIHFIGKDIV-RFHTIYWPAMLMGLGLP-----LPT--QVFSHGYLTVE-GGKMSKSLGNVVDPS 339 (530)
T ss_pred hhhHHHhCCCCCCceEEEEEecccc-hhHHHHHHHHHHhCCCC-----CCC--EEEeeccEEEC-CceecccCCceecHH
Confidence 000 0111 123555555542 222222 455667763 222 34456889865 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCC-CCCCccccHHHHhccc-CCchhHHHHHHHHH
Q 010832 404 DLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNN-RLTNYTFSFDQMLNDK-GNTAVYLLYAHARI 481 (499)
Q Consensus 404 dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~-~~~~~~Fd~~~~~~~~-~n~~~YlqYa~aR~ 481 (499)
|++++ +|++++||++++.. ..++++|+++.+.... .+..-++++++.|+
T Consensus 340 d~i~~-----------------------------~g~D~lR~~l~~~~~~~~d~~f~~~~l~~~~n~~l~~~l~n~~~r~ 390 (530)
T TIGR00398 340 DLLAR-----------------------------FGADILRYYLLKERPLGKDGDFSWEDFVERVNADLANKLGNLLNRT 390 (530)
T ss_pred HHHHH-----------------------------cCchHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988 59999999999876 6899999999865542 33344899999999
Q ss_pred HHHHHHh
Q 010832 482 CSIIRKS 488 (499)
Q Consensus 482 ~silrk~ 488 (499)
.+++.+.
T Consensus 391 ~~~~~~~ 397 (530)
T TIGR00398 391 LGFIKKY 397 (530)
T ss_pred HHHHHHh
Confidence 9998874
No 28
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=99.92 E-value=8.4e-24 Score=215.62 Aligned_cols=240 Identities=18% Similarity=0.233 Sum_probs=164.9
Q ss_pred eEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHHHH
Q 010832 129 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 208 (499)
Q Consensus 129 ~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l~~ 208 (499)
+++|..+-|+|+|++||||+|+.++.|+++|++|..|++|..+..++|+|..+..-+..
T Consensus 1 ~~~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~--------------------- 59 (319)
T cd00814 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEE--------------------- 59 (319)
T ss_pred CEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHH---------------------
Confidence 46788899999999999999999999999999999999999999999988766533210
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeee---ccccccCcHHHHHHH
Q 010832 209 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK---GESFYNPYIPGVIDE 285 (499)
Q Consensus 209 ~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~---~es~~~~~v~~~i~~ 285 (499)
... + ++++++.+.+.|+++|++|||+||.+ +++.|.+.+.+++++
T Consensus 60 --------~g~------------------~------~~e~~~~~~~~~~~~l~~LgI~~D~~~~tt~~~~~~~v~~i~~~ 107 (319)
T cd00814 60 --------EGV------------------T------PQELCDKYHEIFKDLFKWLNISFDYFIRTTSPRHKEIVQEFFKK 107 (319)
T ss_pred --------cCC------------------C------HHHHHHHHHHHHHHHHHHcCCcCCCCeeCCCHHHHHHHHHHHHH
Confidence 001 1 24678899999999999999999743 234577889999999
Q ss_pred HHHCCCeEeec-------------------CeEEEEec------------CC-------------------CCCeEEEcC
Q 010832 286 LSKQGLVEESQ-------------------GARVIFIE------------GV-------------------NIPLIIVKS 315 (499)
Q Consensus 286 L~~~g~~y~~d-------------------Ga~~~~~~------------g~-------------------~~d~vl~ks 315 (499)
|.++|++|+.+ ..++|+++ +. -.|.-+.|.
T Consensus 108 L~ekG~iY~~~~~~~yc~~~~~~l~e~~~~~~~ff~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~d~~isR~ 187 (319)
T cd00814 108 LYENGYIYEGEYEGLYCVSCERFLPEWREEEHYFFRLSKFQDRLLEWLEKNPDFIWPENARNEVLSWLKEGLKDLSITRD 187 (319)
T ss_pred HHHCCCEEeeeeeeeECCCCCcEeeEEEeeeeEEEEhHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHhCCCcccCCCcc
Confidence 99999999754 34445543 00 012212221
Q ss_pred -----------CCcccccchh--HHHH------HHHH-----hhcCCCeEEEEecCCccccHHHHH-HHHHHcCCCCCCC
Q 010832 316 -----------DGGFNYASTD--LAAL------WYRL-----NEEKAEWIIYVTDVGQQLHFDMVF-SAAKRAGWLSADD 370 (499)
Q Consensus 316 -----------DG~~~Y~t~D--iA~~------~~k~-----~~~~~d~~i~V~g~~q~~hf~~~~-~~~~~lG~~~~~~ 370 (499)
.|...|.--| ++|. .++. -.......+++.|.|+..+..... +++.++|+.
T Consensus 188 ~~~WGipvp~~~~~~~yvWfda~~~y~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~D~~~fh~~~~pa~l~~~~~~---- 263 (319)
T cd00814 188 LFDWGIPVPLDPGKVIYVWFDALIGYISATGYYNEEWGNSWWWKDGWPELVHFIGKDIIRFHAIYWPAMLLGAGLP---- 263 (319)
T ss_pred CcccCeeCCCCCCcEEEEehhhHHHHHHHcccccccccchhhhhcCCCceEEEEeechhhhhHHHHHHHHHhCCCC----
Confidence 1222333222 2221 0000 011223578889998754332222 445667763
Q ss_pred CCCCcEEEEEeEEEecCCCCccccccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcC
Q 010832 371 STYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKN 450 (499)
Q Consensus 371 ~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~ 450 (499)
+...+.+. |+++. +|+|||||+||+|++.|+++. +|++++||++++.
T Consensus 264 -~~~~~~~~--~~~~~-~g~kmSkS~gn~i~~~~~l~~-----------------------------~~~d~~R~~l~~~ 310 (319)
T cd00814 264 -LPTRIVAH--GYLTV-EGKKMSKSRGNVVDPDDLLER-----------------------------YGADALRYYLLRE 310 (319)
T ss_pred -CCcEeeee--eeEEE-CCeeecccCCcccCHHHHHHH-----------------------------cCchHHHHHHHhc
Confidence 34555544 77884 589999999999999999998 5999999999987
Q ss_pred CCC-CCccc
Q 010832 451 NRL-TNYTF 458 (499)
Q Consensus 451 ~~~-~~~~F 458 (499)
.+. ++.+|
T Consensus 311 ~~~~~d~~f 319 (319)
T cd00814 311 RPEGKDSDF 319 (319)
T ss_pred CCCCCCCCC
Confidence 763 44443
No 29
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=99.91 E-value=6.1e-23 Score=228.33 Aligned_cols=269 Identities=16% Similarity=0.186 Sum_probs=181.8
Q ss_pred ceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHHH
Q 010832 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (499)
Q Consensus 128 ~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (499)
++++|...-|+|+|++||||+|+.+++|+++|++|..|++|..+.+.+|+|..+...++.
T Consensus 2 ~~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~-------------------- 61 (673)
T PRK00133 2 RKILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEK-------------------- 61 (673)
T ss_pred CCEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHH--------------------
Confidence 568898888999999999999999999999999999999999999999988866543311
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeecc---ccccCcHHHHHH
Q 010832 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE---SFYNPYIPGVID 284 (499)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~~e---s~~~~~v~~~i~ 284 (499)
... + .+++++.+.+.|++++++|||++|++.. ..|...+.++++
T Consensus 62 ---------~g~------------------~------p~e~~~~~~~~~~~~~~~l~i~~d~f~rtt~~~h~~~v~~~~~ 108 (673)
T PRK00133 62 ---------EGI------------------T------PEELIARYHAEHKRDFAGFGISFDNYGSTHSEENRELAQEIYL 108 (673)
T ss_pred ---------cCC------------------C------HHHHHHHHHHHHHHHHHHhCCCCCCCccCCcHHHHHHHHHHHH
Confidence 001 1 1356888899999999999999976543 357788999999
Q ss_pred HHHHCCCeEeecCeEEEEec-----------------------CC-----------------------------------
Q 010832 285 ELSKQGLVEESQGARVIFIE-----------------------GV----------------------------------- 306 (499)
Q Consensus 285 ~L~~~g~~y~~dGa~~~~~~-----------------------g~----------------------------------- 306 (499)
+|.++|++|+.++.+|+... |+
T Consensus 109 ~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~C~~~d~~g~~ce~cg~~~~~~~l~~~~~~~~g~~~e~~~~~~~f 188 (673)
T PRK00133 109 KLKENGYIYEKTIEQLYDPEKGMFLPDRFVKGTCPKCGAEDQYGDNCEVCGATYSPTELINPKSAISGATPVLKESEHFF 188 (673)
T ss_pred HHHHCCCEEEeeeEEEEeCCCCCCccchheecccCCCCCcccCCchhhhccccCChHhhcCCccccCCCcceEEecceEE
Confidence 99999999998777766432 00
Q ss_pred -----------------------------------CCCeEEEcC-----------CCcccccchh--HHHHH----H---
Q 010832 307 -----------------------------------NIPLIIVKS-----------DGGFNYASTD--LAALW----Y--- 331 (499)
Q Consensus 307 -----------------------------------~~d~vl~ks-----------DG~~~Y~t~D--iA~~~----~--- 331 (499)
..|.-|-|. +|.+.|.--| ++|.. |
T Consensus 189 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~ISR~~~W~GipvP~~~~~~iyVW~dal~~Yl~~~~~~~~~ 268 (673)
T PRK00133 189 FKLPRFEEFLKEWITRSGELQPNVANKMKEWLEEGLQDWDISRDAPYFGFEIPGAPGKVFYVWLDAPIGYISSTKNLCDK 268 (673)
T ss_pred EEHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCCCcccceeeeCCccceECCCCCCeEEEEcccchhhhhHHHhhhccc
Confidence 001101000 0111122111 11100 0
Q ss_pred ----HHhh-cCC---CeEEEEecCCccccHHHHH--HHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCccc
Q 010832 332 ----RLNE-EKA---EWIIYVTDVGQQLHFDMVF--SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVR 401 (499)
Q Consensus 332 ----k~~~-~~~---d~~i~V~g~~q~~hf~~~~--~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~ 401 (499)
.+.. |.. ..+++++|.|-.. |..++ +++.++|+. +... .+.+|+|+. +|+|||||+||+|+
T Consensus 269 ~~~~~~~~~w~~~~~~~~v~~iGkDi~~-fH~i~wpa~l~a~g~~-----lP~~--v~~hg~v~~-~G~KMSKS~GNvV~ 339 (673)
T PRK00133 269 RGGLDWDEYWKKDSDTELYHFIGKDIIY-FHTLFWPAMLEGAGYR-----LPTN--VFAHGFLTV-EGAKMSKSRGTFIW 339 (673)
T ss_pred ccchhHHHhcCCCCCceEEEEEeecchh-HHHHHHHHHHHhCCCC-----CCCE--EeeeccEEe-cCCcccccCCcccC
Confidence 0000 101 1234555554321 22221 445567774 2222 234588986 89999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCC--CCccccHHHHhcc-cCCch-hHHHHH
Q 010832 402 LVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRL--TNYTFSFDQMLND-KGNTA-VYLLYA 477 (499)
Q Consensus 402 l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~--~~~~Fd~~~~~~~-~~n~~-~YlqYa 477 (499)
+.|++++ +|++++||++++..+. .+.+|||+.+... +.+.. .+-+++
T Consensus 340 p~dlie~-----------------------------ygaDalR~~ll~~~~~~~~D~~Fs~~~~~~~~n~~l~~~l~Nl~ 390 (673)
T PRK00133 340 ARTYLDH-----------------------------LDPDYLRYYLAAKLPETIDDLDFNWEDFQQRVNSELVGKVVNFA 390 (673)
T ss_pred HHHHHHH-----------------------------cCchHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999998 5999999999988875 5999999986542 22222 277877
Q ss_pred HHHHHHHHHHh
Q 010832 478 HARICSIIRKS 488 (499)
Q Consensus 478 ~aR~~silrk~ 488 (499)
+ |+++++++.
T Consensus 391 ~-R~~~~~~k~ 400 (673)
T PRK00133 391 S-RTAGFINKR 400 (673)
T ss_pred H-HHHHHHHHh
Confidence 7 999998764
No 30
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.91 E-value=4.2e-23 Score=211.91 Aligned_cols=256 Identities=17% Similarity=0.180 Sum_probs=169.1
Q ss_pred eEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHHHH
Q 010832 129 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 208 (499)
Q Consensus 129 ~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l~~ 208 (499)
+..|--.-|||+|++||||+|+.++.|+++|+++..||+|..+..++|+|.++..-+... .+-.. ...+.+
T Consensus 2 ~f~i~~~pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~---lg~~~---~~~~~~--- 72 (338)
T cd00818 2 EFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKE---LGISG---KKDIEK--- 72 (338)
T ss_pred CeEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHH---hCCCC---Ccchhh---
Confidence 466778889999999999999999999999999999999999999999999887554321 11000 000000
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeee-----ccccccCcHHHHH
Q 010832 209 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK-----GESFYNPYIPGVI 283 (499)
Q Consensus 209 ~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~-----~es~~~~~v~~~i 283 (499)
+ .+ .+..+.++++++.+.+.|.+.+++|||.++|. .+..|.+.+.+++
T Consensus 73 --------~--~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f 125 (338)
T cd00818 73 --------M--GI-----------------AEFNAKCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVF 125 (338)
T ss_pred --------c--CH-----------------HHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHH
Confidence 0 00 01223456789999999999999999977542 2346777899999
Q ss_pred HHHHHCCCeEeecCeEEEEec-----------------------C-C----------------CCCeE------------
Q 010832 284 DELSKQGLVEESQGARVIFIE-----------------------G-V----------------NIPLI------------ 311 (499)
Q Consensus 284 ~~L~~~g~~y~~dGa~~~~~~-----------------------g-~----------------~~d~v------------ 311 (499)
++|.++|++|+.++.+++.+. . + -.|..
T Consensus 126 ~~L~~~G~iY~~~~~v~~~v~~~~~~qwf~~l~~~~~~l~~~~~~~~~~P~~~~~~~~~~l~~l~dw~iSR~~~WGip~P 205 (338)
T cd00818 126 KQLHEKGLLYRGYKVVPWPLIYRATPQWFIRVTKIKDRLLEANDKVNWIPEWVKNRFGNWLENRRDWCISRQRYWGTPIP 205 (338)
T ss_pred HHHHHCCCEeccCCeeeeEEEEEecCeEEEEcHHHHHHHHHHHhcCcEECHHHHHHHHHHHhcchhcceeeecccCceee
Confidence 999999999998776655431 0 0 01111
Q ss_pred EE--cCCC--------ccc--ccchhHHHHH---H-----HHhh-cCCCeEEEEecCCccc-cHHHHHHHHH-HcCCCCC
Q 010832 312 IV--KSDG--------GFN--YASTDLAALW---Y-----RLNE-EKAEWIIYVTDVGQQL-HFDMVFSAAK-RAGWLSA 368 (499)
Q Consensus 312 l~--ksDG--------~~~--Y~t~DiA~~~---~-----k~~~-~~~d~~i~V~g~~q~~-hf~~~~~~~~-~lG~~~~ 368 (499)
++ .++| ... |+..-+.+.. + .++. +..| +.+.|.|+-. +|..+.-.+. ..|..
T Consensus 206 ~~~~~~~~~~~~~~~~~v~~vWfda~~~~~~~~~~~~~~~~~~~~~p~d--~~~~GkDii~~wf~~~~~~~~~~~~~~-- 281 (338)
T cd00818 206 VWYCEDCGEVLVRRVPDVLDVWFDSGSMPYAQLHYPFENEDFEELFPAD--FILEGSDQTRGWFYSLLLLSTALFGKA-- 281 (338)
T ss_pred EEEecCCCeEEEecCCceEEEEEeCCCCHHHHcCCCCcchhhhccCCCe--EEeecchHHhHHHHHHHHHHHHhcCCC--
Confidence 11 1121 111 2221111111 1 1111 2222 5577888853 6665543332 33442
Q ss_pred CCCCCCcEEEEEeEEEecCCCCccccccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhh
Q 010832 369 DDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDL 448 (499)
Q Consensus 369 ~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L 448 (499)
++...+.| |+++..+|+|||||+||+|+++|++++ +|++++||+++
T Consensus 282 --p~~~~~~h---g~~~~~~g~KmSKS~gn~i~~~~~~~~-----------------------------~~~D~~R~~l~ 327 (338)
T cd00818 282 --PYKNVIVH---GFVLDEDGRKMSKSLGNYVDPQEVVDK-----------------------------YGADALRLWVA 327 (338)
T ss_pred --ccceEEEE---eeEECCCCCCCCCCCCCcCCHHHHHHH-----------------------------cCcHHHHHHHH
Confidence 44556666 667767899999999999999999987 59999999999
Q ss_pred cCC-CCCCccc
Q 010832 449 KNN-RLTNYTF 458 (499)
Q Consensus 449 ~~~-~~~~~~F 458 (499)
+.+ ..+++.|
T Consensus 328 ~~~~~~~d~~~ 338 (338)
T cd00818 328 SSDVYAEDLRF 338 (338)
T ss_pred hCCCccCCCCC
Confidence 887 4555544
No 31
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.91 E-value=5.3e-23 Score=214.50 Aligned_cols=136 Identities=18% Similarity=0.195 Sum_probs=102.2
Q ss_pred eEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHHHH
Q 010832 129 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 208 (499)
Q Consensus 129 ~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l~~ 208 (499)
+++|...-|||+|++||||+|+.+++|+++|++|..|++|.+....+|.|.++...++..... .+..+.
T Consensus 2 ~f~i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~-------~~~~~~---- 70 (382)
T cd00817 2 VFVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGI-------EGKTRH---- 70 (382)
T ss_pred cEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcc-------cccchh----
Confidence 578889999999999999999999999999999999999999999999999887665321100 000000
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeee-----ccccccCcHHHHH
Q 010832 209 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK-----GESFYNPYIPGVI 283 (499)
Q Consensus 209 ~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~-----~es~~~~~v~~~i 283 (499)
+.+++ +.++..+++++.+.+.+++++++|||++||. .+..|...+.+++
T Consensus 71 ---------~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f 124 (382)
T cd00817 71 ---------DLGRE-----------------EFLEKCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAF 124 (382)
T ss_pred ---------cCCHH-----------------HHHHHHHHHHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHH
Confidence 00110 1123456778999999999999999999852 1234567899999
Q ss_pred HHHHHCCCeEeecCeEEE
Q 010832 284 DELSKQGLVEESQGARVI 301 (499)
Q Consensus 284 ~~L~~~g~~y~~dGa~~~ 301 (499)
.+|.++|++|+.+..+++
T Consensus 125 ~~L~~~G~iy~~~~~~~y 142 (382)
T cd00817 125 VRLYEKGLIYRDNRLVNW 142 (382)
T ss_pred HHHHHCCCEEeeeeEEee
Confidence 999999999985544433
No 32
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=2.1e-22 Score=215.39 Aligned_cols=117 Identities=21% Similarity=0.301 Sum_probs=99.0
Q ss_pred CceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHH
Q 010832 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (499)
Q Consensus 127 ~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l 206 (499)
.++++|...=|+|+|++||||+++++.+|++||++|..|++|..+...+++|+.|..-|...
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~------------------ 65 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKE------------------ 65 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHc------------------
Confidence 57899999999999999999999999999999999999999999999999999776443210
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeec---cccccCcHHHHH
Q 010832 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG---ESFYNPYIPGVI 283 (499)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~~---es~~~~~v~~~i 283 (499)
.. +| +++++.+.+.|+++++.|||+||.+. +..|.+.+++++
T Consensus 66 -----------g~------------------tP------~el~d~~~~~~~~~~~~l~IsfD~F~rTt~~~h~~~vq~~f 110 (558)
T COG0143 66 -----------GI------------------TP------QELVDKNHEEFKELFKALNISFDNFIRTTSPEHKELVQEFF 110 (558)
T ss_pred -----------CC------------------CH------HHHHHHHHHHHHHHHHHhCCcccccccCCCHHHHHHHHHHH
Confidence 11 12 46788889999999999999998653 345678899999
Q ss_pred HHHHHCCCeEeec
Q 010832 284 DELSKQGLVEESQ 296 (499)
Q Consensus 284 ~~L~~~g~~y~~d 296 (499)
++|.++|++|..+
T Consensus 111 ~~L~~~G~I~~~~ 123 (558)
T COG0143 111 LKLYENGDIYLRE 123 (558)
T ss_pred HHHHHCCCEeccc
Confidence 9999999999743
No 33
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=99.90 E-value=3.3e-22 Score=218.71 Aligned_cols=122 Identities=15% Similarity=0.205 Sum_probs=99.4
Q ss_pred ceEEEEecCCCCCCCCccchhhHh-HHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHH
Q 010832 128 KKAVVDFSSPNIAKEMHVGHLRST-IIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (499)
Q Consensus 128 ~~v~Ve~~SpNp~~plHiGH~R~~-iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l 206 (499)
++++|.-.-|||||.+||||+|+. ++.|+++|++|..|++|..+.+++|.|..+..-+..
T Consensus 3 ~~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~------------------- 63 (556)
T PRK12268 3 MRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKK------------------- 63 (556)
T ss_pred CcEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHH-------------------
Confidence 568999999999999999999999 999999999999999999999999988765533210
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeecc---ccccCcHHHHH
Q 010832 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE---SFYNPYIPGVI 283 (499)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~~e---s~~~~~v~~~i 283 (499)
... + .+++++.+.+.|++++++|||.+|++.. ..|.+.+.+++
T Consensus 64 ----------~g~------------------~------~~~~~~~~~~~~~~~~~~l~i~~d~~~~t~~~~~~~~~~~~~ 109 (556)
T PRK12268 64 ----------EGV------------------T------PQELADKYHEEHKEDFKKLGISYDLFTRTTSPNHHEVVQEFF 109 (556)
T ss_pred ----------cCC------------------C------HHHHHHHHHHHHHHHHHHcCCcCCCCcCCCCHHHHHHHHHHH
Confidence 001 1 1356788889999999999999876433 25678899999
Q ss_pred HHHHHCCCeEeecCeEEEE
Q 010832 284 DELSKQGLVEESQGARVIF 302 (499)
Q Consensus 284 ~~L~~~g~~y~~dGa~~~~ 302 (499)
++|.++|++|+.++.+++.
T Consensus 110 ~~L~~~G~~y~~~~~~~~~ 128 (556)
T PRK12268 110 LKLYENGYIYKKTIEQAYC 128 (556)
T ss_pred HHHHHCCCeEEeeeEEEec
Confidence 9999999999877666653
No 34
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=99.89 E-value=2.1e-22 Score=214.06 Aligned_cols=141 Identities=16% Similarity=0.219 Sum_probs=110.8
Q ss_pred CCeEEEcCCCcccccchhHHHHHHHHhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecC
Q 010832 308 IPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE 387 (499)
Q Consensus 308 ~d~vl~ksDG~~~Y~t~DiA~~~~k~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~ 387 (499)
.|+||+|+||+|||. +|++++++ ..+++++| +|.||..+++++..++++||+. .+.+.|+++ ++. .
T Consensus 172 ~D~Vl~RsdG~ptY~---~A~~vdD~-~~~ithvI--rG~d~~~~t~~~~~l~~aLg~~------~p~~~H~p~-l~~-~ 237 (470)
T TIGR00464 172 DDFVILRSDGSPTYN---FAVVVDDY-LMKITHVI--RGEDHISNTPKQILIYQALGWK------IPVFAHLPM-ILD-E 237 (470)
T ss_pred CCeEEEecCCCcccc---cHHHHHHH-hCCCCEEE--ECchhhcCHHHHHHHHHHcCCC------CCeEEEEee-eec-C
Confidence 589999999999999 89999998 57999998 9999999999999999999983 578999988 555 7
Q ss_pred CCCccccccCCcccHHHHHHHH-HHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcc
Q 010832 388 DGKRLRTRFSEVVRLVDLLDEA-KNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLND 466 (499)
Q Consensus 388 ~g~KMSkR~G~~v~l~dll~e~-~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~ 466 (499)
+|.|||||+| .+++++|++++ ...|......+ .+|++....++. -..++++||+|++.+.+++.|||+++..+
T Consensus 238 ~g~kLSKR~g-~~~l~~l~~~g~~p~a~~~~~~~---lG~~~~~~~e~~--~~~~~i~~f~l~~~~~~~~~fd~~kL~~~ 311 (470)
T TIGR00464 238 DGKKLSKRDG-ATSIMQFKEQGYLPEALINYLAL---LGWSPPDDQEFF--SLEELIEIFSLNRVSKSPAKFDWKKLQWL 311 (470)
T ss_pred CCccccccCC-CccHHHHHHCCCCHHHHHHHHHH---cCCCCCCccccC--CHHHHHHhcCcccCCCCCCeecHHHHHHH
Confidence 8999999999 88999999997 33343333333 222211000000 02378999999999999999999998777
Q ss_pred cC
Q 010832 467 KG 468 (499)
Q Consensus 467 ~~ 468 (499)
|+
T Consensus 312 N~ 313 (470)
T TIGR00464 312 NA 313 (470)
T ss_pred HH
Confidence 54
No 35
>PLN02224 methionine-tRNA ligase
Probab=99.89 E-value=8.8e-22 Score=214.76 Aligned_cols=119 Identities=15% Similarity=0.234 Sum_probs=97.7
Q ss_pred CCCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHH
Q 010832 125 LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIG 204 (499)
Q Consensus 125 ~~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~ 204 (499)
+.+++++|.-.-|+|+|++||||+|+++++|+++|++|..|++|.++.+++|+|.+|..-+.. .+
T Consensus 66 ~~~~~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~-----------~g---- 130 (616)
T PLN02224 66 DEADTFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAA-----------NG---- 130 (616)
T ss_pred CCCCeEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHH-----------cC----
Confidence 467889999999999999999999999999999999999999999999999999887644311 00
Q ss_pred HHHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeec---cccccCcHHH
Q 010832 205 ELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG---ESFYNPYIPG 281 (499)
Q Consensus 205 ~l~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~~---es~~~~~v~~ 281 (499)
.+| +++++.+...|++.+++|||++|.+. +..|...+++
T Consensus 131 --------------~~p------------------------~e~~~~~~~~~~~~~~~l~I~~D~f~rTt~~~h~~~vq~ 172 (616)
T PLN02224 131 --------------RNP------------------------PEHCDIISQSYRTLWKDLDIAYDKFIRTTDPKHEAIVKE 172 (616)
T ss_pred --------------CCh------------------------HHHHHHHHHHHHHHHHHcCCCCCcCeeCCCHHHHHHHHH
Confidence 011 24566677888999999999997543 3456778999
Q ss_pred HHHHHHHCCCeEeec
Q 010832 282 VIDELSKQGLVEESQ 296 (499)
Q Consensus 282 ~i~~L~~~g~~y~~d 296 (499)
++.+|.++|++|+.+
T Consensus 173 ~f~~L~~~G~Iy~~~ 187 (616)
T PLN02224 173 FYARVFANGDIYRAD 187 (616)
T ss_pred HHHHHHHCCCEEEee
Confidence 999999999999854
No 36
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=99.88 E-value=9.9e-22 Score=218.17 Aligned_cols=268 Identities=18% Similarity=0.204 Sum_probs=172.7
Q ss_pred CceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHH
Q 010832 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (499)
Q Consensus 127 ~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l 206 (499)
.++++|...-|+|+|++||||+|+++++|+++|++|.+|++|..+...+|+|..+..-+.. .+
T Consensus 3 ~~~~~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~-----------~g------ 65 (648)
T PRK12267 3 KKTFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEK-----------AG------ 65 (648)
T ss_pred CCCEEEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHH-----------cC------
Confidence 3578999999999999999999999999999999999999999999999998866432211 00
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeee-cc--ccccCcHHHHH
Q 010832 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK-GE--SFYNPYIPGVI 283 (499)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~-~e--s~~~~~v~~~i 283 (499)
. + .+++++.+.+.|+++|++|||+||++ ++ ..|.+.+++++
T Consensus 66 ------------~------------------~------~~e~~d~~~~~fk~~l~~lgI~~D~f~rTt~~~h~~~v~~~~ 109 (648)
T PRK12267 66 ------------K------------------T------PQEYVDEISAGFKELWKKLDISYDKFIRTTDERHKKVVQKIF 109 (648)
T ss_pred ------------C------------------C------HHHHHHHHHHHHHHHHHHcCCCCCCCeeCCCHHHHHHHHHHH
Confidence 1 1 13568889999999999999999753 33 23567899999
Q ss_pred HHHHHCCCeEeec--CeEEEEec-----------------CC---------------------------C----------
Q 010832 284 DELSKQGLVEESQ--GARVIFIE-----------------GV---------------------------N---------- 307 (499)
Q Consensus 284 ~~L~~~g~~y~~d--Ga~~~~~~-----------------g~---------------------------~---------- 307 (499)
++|.++|++|..+ |.+|..++ |. .
T Consensus 110 ~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l~~~~~c~~cg~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~ 189 (648)
T PRK12267 110 EKLYEQGDIYKGEYEGWYCVSCETFFTESQLVDGGKCPDCGREVELVKEESYFFRMSKYQDRLLEYYEENPDFIQPESRK 189 (648)
T ss_pred HHHHHCCCEEEeeEEEeecCCCCccCChHHhccCCcCCCCCCcCeEEecceEEEEcHHHHHHHHHHHhhCCcccCCHHHH
Confidence 9999999999753 33332211 00 0
Q ss_pred ------------CCeEEEcCC---C--------cccc--cchhHHHHH---H------HHh-hcCCCeEEEEecCCcccc
Q 010832 308 ------------IPLIIVKSD---G--------GFNY--ASTDLAALW---Y------RLN-EEKAEWIIYVTDVGQQLH 352 (499)
Q Consensus 308 ------------~d~vl~ksD---G--------~~~Y--~t~DiA~~~---~------k~~-~~~~d~~i~V~g~~q~~h 352 (499)
.|.-|-|.. | ...| +-.=++|.. | .++ .|. ..+++.|.|+..
T Consensus 190 ~~~~~~~l~~~l~D~~ISR~~~~WGipvP~~~~~v~yVWfDA~~~y~s~~~~~~~~~~~~~~~wp--~~~~~~GkDii~- 266 (648)
T PRK12267 190 NEMINNFIKPGLEDLSISRTSFDWGIPVPFDPKHVVYVWIDALLNYITALGYGSDDDELFKKFWP--ADVHLVGKDILR- 266 (648)
T ss_pred HHHHHHHhhCCCCCcccCCCCCCcceECCCCCCCEEEEcccchHHHHHHcCCCCCCchHHHhhcc--cceEEEeeeecc-
Confidence 011111100 0 0011 000011100 0 000 011 124455665533
Q ss_pred HHHHH--HHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHH
Q 010832 353 FDMVF--SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEE 430 (499)
Q Consensus 353 f~~~~--~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~ 430 (499)
|..++ +++.++|+. +...-+.| |+++. +|+|||||+||+|++.|+++.
T Consensus 267 fH~i~wpa~l~~~~~~----~p~~v~~h---g~l~~-eg~KMSKS~GN~i~p~d~l~~---------------------- 316 (648)
T PRK12267 267 FHAIYWPIMLMALGLP----LPKKVFAH---GWWLM-KDGKMSKSKGNVVDPEELVDR---------------------- 316 (648)
T ss_pred hhHHHHHHHHHhCCCC----CCcEEEec---ceEEE-CCceecccCCcccCHHHHHHH----------------------
Confidence 33333 445567774 22223333 77884 689999999999999999887
Q ss_pred HHHHHHHhhhhHHHHHhhcC-CCCCCccccHHHHhcc-cCCchhHHHHHHHHHHHHHHH
Q 010832 431 LEQTAEAVGYGAAKYFDLKN-NRLTNYTFSFDQMLND-KGNTAVYLLYAHARICSIIRK 487 (499)
Q Consensus 431 ~~~~a~~vg~~airy~~L~~-~~~~~~~Fd~~~~~~~-~~n~~~YlqYa~aR~~silrk 487 (499)
+|++++||++++. ....+.+|+++.+.+. +.+-.--+--...|+.+.+.+
T Consensus 317 -------ygaD~lR~~L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgNl~~R~~~~~~~ 368 (648)
T PRK12267 317 -------YGLDALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGNLLNRTVAMINK 368 (648)
T ss_pred -------cCCcHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 6999999999965 5689999999997653 211111233344566666554
No 37
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.88 E-value=3.4e-22 Score=180.35 Aligned_cols=143 Identities=22% Similarity=0.226 Sum_probs=117.7
Q ss_pred EEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHHHHHHH
Q 010832 132 VDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYR 211 (499)
Q Consensus 132 Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~ 211 (499)
|++|+|||+|++||||+|+++++|+++|+||..|++|..+++++|+|.|++..+...
T Consensus 1 ~~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~~----------------------- 57 (143)
T cd00802 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKK----------------------- 57 (143)
T ss_pred CEecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHhc-----------------------
Confidence 579999999999999999999999999999999999999999999999987554210
Q ss_pred HHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeeccccccCcHHHHHHHHHHCCC
Q 010832 212 RSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGL 291 (499)
Q Consensus 212 ~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~~es~~~~~v~~~i~~L~~~g~ 291 (499)
. ..|+++++.+.+.|++.|+
T Consensus 58 ------~------------------------~~~~~~~~~~~~~~~~~~~------------------------------ 77 (143)
T cd00802 58 ------G------------------------ENAKAFVERWIERIKEDVE------------------------------ 77 (143)
T ss_pred ------C------------------------CCHHHHHHHHHHHHHHHHH------------------------------
Confidence 0 1255677778888888777
Q ss_pred eEeecCeEEEEecCCCCCeEEEcCCCcccccchhHHHHHHHHhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCC
Q 010832 292 VEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDS 371 (499)
Q Consensus 292 ~y~~dGa~~~~~~g~~~d~vl~ksDG~~~Y~t~DiA~~~~k~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~ 371 (499)
|.+.++|...++...+ ..+++.|.||..|+++.+.+++++|..
T Consensus 78 -----------------------------y~~~~~a~~~~~~~~~---~~i~~~G~Dq~~h~~~~~~i~~~~~~~----- 120 (143)
T cd00802 78 -----------------------------YMFLQAADFLLLYETE---CDIHLGGSDQLGHIELGLELLKKAGGP----- 120 (143)
T ss_pred -----------------------------HHHHHHHHHHHHhhCC---cEEEEechhHHHHHHHHHHHHHHhCCC-----
Confidence 9999988776665322 688999999999999999999999862
Q ss_pred CCCcEEEEEeEEEecCCCCcccccc
Q 010832 372 TYPKASHVGFGLVLGEDGKRLRTRF 396 (499)
Q Consensus 372 ~~~~~~Hv~~g~V~~~~g~KMSkR~ 396 (499)
..+.+ +.||+|.+.+|+|||||+
T Consensus 121 ~~p~~--~~~~~l~~~~g~KmSks~ 143 (143)
T cd00802 121 ARPFG--LTFGRVMGADGTKMSKSK 143 (143)
T ss_pred CCceE--EEeCCeECCCCCcCCCCC
Confidence 23444 456889988889999995
No 38
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=99.87 E-value=1.2e-21 Score=208.34 Aligned_cols=136 Identities=19% Similarity=0.259 Sum_probs=107.6
Q ss_pred CCeEEEcCCCcccccchhH-HHHHHHHhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEec
Q 010832 308 IPLIIVKSDGGFNYASTDL-AALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLG 386 (499)
Q Consensus 308 ~d~vl~ksDG~~~Y~t~Di-A~~~~k~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~ 386 (499)
.|+||+||||+|||.++|+ +.|.++ .+++| +|.||..+++++..+++++|+. .+.+.|+++ +.+
T Consensus 182 ~D~Vl~RsDG~ptY~~a~vVdD~~~~-----ithvI--rG~d~~~~t~~q~~l~~alG~~------~p~~~H~pl--i~~ 246 (476)
T PRK01406 182 DDFVILRSDGTPTYNFAVVVDDHLMG-----ITHVI--RGEDHLSNTPKQILLYEALGWE------VPVFAHLPL--ILG 246 (476)
T ss_pred CCcEEEecCCCccccchHHHHHHHcC-----CCEEE--ECchhhcCHHHHHHHHHHhCCC------CCeEEEeee--eeC
Confidence 5899999999999999998 666654 47887 9999999999999999999984 478999987 444
Q ss_pred CCCCccccccCCcccHHHHHHHHH-HHH-HHHHHHhcCCCCCCH--HHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHH
Q 010832 387 EDGKRLRTRFSEVVRLVDLLDEAK-NRS-KAVLIERGKDKEWTE--EELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQ 462 (499)
Q Consensus 387 ~~g~KMSkR~G~~v~l~dll~e~~-~~a-~~~~~~~~~~~~~~~--~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~ 462 (499)
.+|.|||||+| .++++++++++. ..| .+.+. + .+|+. ++... -.+++++|+|++.+.+++.||+++
T Consensus 247 ~~g~klSKR~g-~~~l~~l~~~G~~p~Ai~n~l~-~---lG~s~~~~e~~~-----~~~~i~~f~l~~~~~s~~~fd~~k 316 (476)
T PRK01406 247 PDGKKLSKRHG-ATSVEQYRDMGYLPEALLNYLA-L---LGWSHGDQEIFS-----LEELIELFDLERVSKSPARFDIKK 316 (476)
T ss_pred CCCCcccCcCC-ccCHHHHHHCCCCHHHHHHHHH-H---hCCCCCccccCC-----HHHHHHhcChhhCCCCCccccHHH
Confidence 78999999999 789999999873 333 34433 2 22331 11111 137899999999999999999999
Q ss_pred HhcccC
Q 010832 463 MLNDKG 468 (499)
Q Consensus 463 ~~~~~~ 468 (499)
+..+|+
T Consensus 317 L~~~N~ 322 (476)
T PRK01406 317 LDWLNG 322 (476)
T ss_pred HHHHHH
Confidence 999864
No 39
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.87 E-value=8.6e-21 Score=203.85 Aligned_cols=253 Identities=15% Similarity=0.193 Sum_probs=165.7
Q ss_pred EEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCC---CccccchHHHH
Q 010832 130 AVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNS---EDANETAIGEL 206 (499)
Q Consensus 130 v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~---~~~~~~~i~~l 206 (499)
++| -|+..|+|++||||+|..+.+|+++|.||..|++|..++..+|+|. +..+ ....|+. ..+.|.++..+
T Consensus 25 ~~~-~~g~~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~-lRkv----p~~~p~~~~~~~~~G~pl~~~ 98 (510)
T PRK00750 25 VVV-ETGIGPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDG-LRKV----PDNVPNQEMLEEYLGKPLTEI 98 (510)
T ss_pred EEE-EeCCCCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCc-cccc----CCCCCchHHHHHhcCcccccC
Confidence 666 5666799999999999999999999999999999999999999985 1111 0000100 00111221110
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeecc-ccc-cCc-HHHHH
Q 010832 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-SFY-NPY-IPGVI 283 (499)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~~e-s~~-~~~-v~~~i 283 (499)
++| .|. .+.+++.+...|.+.+++|||++++.+. ..| ++. .+.+.
T Consensus 99 ------------p~p--------------~G~------~~~~~~~~~~~~~~~~~~~gi~~d~~~~t~~y~~g~~~~~i~ 146 (510)
T PRK00750 99 ------------PDP--------------FGC------HESYAEHFNAPLREFLDRFGIEYEFISATECYKSGRYDEAIL 146 (510)
T ss_pred ------------CCC--------------CCC------chHHHHHHHHHHHHHHHHcCCceEEEehhhhhccCchHHHHH
Confidence 121 111 2456888999999999999999986543 344 433 34445
Q ss_pred HHHHHCCCeEe--------ecCeEEEEec------CCCCCeEEEcC---CCcccccchhHHH------------HHHHH-
Q 010832 284 DELSKQGLVEE--------SQGARVIFIE------GVNIPLIIVKS---DGGFNYASTDLAA------------LWYRL- 333 (499)
Q Consensus 284 ~~L~~~g~~y~--------~dGa~~~~~~------g~~~d~vl~ks---DG~~~Y~t~DiA~------------~~~k~- 333 (499)
..|.+++.+.+ .-..-|+... |.....++..- .|+.+|.+. +++ ..||.
T Consensus 147 ~~l~~~~~i~~il~~~~~~~~~~~~~P~~pic~~cg~~~~~~~~~~d~~~~~v~y~~~-cG~~~~~~~~~g~~KL~Wr~d 225 (510)
T PRK00750 147 TALENRDEIMEILLPYLGEERQATYSPFLPICPKCGKVLTTPVISYDAEAGTVTYDCE-CGHEGEVPVTGGHGKLQWKVD 225 (510)
T ss_pred HHHHhHHHHHHHHHHhcCCccCCCeeeeeeeCCCCCccceEEEEEEeCCCCEEEEEcC-CCCEEEEecCCCCcccCCCCC
Confidence 55555554432 1122344332 43322233222 344566543 121 11221
Q ss_pred -----hhcCCCeEEEEecCCccc-cHHHHHHHHH-HcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccHHHHH
Q 010832 334 -----NEEKAEWIIYVTDVGQQL-HFDMVFSAAK-RAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLL 406 (499)
Q Consensus 334 -----~~~~~d~~i~V~g~~q~~-hf~~~~~~~~-~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~dll 406 (499)
...+. -+-+.|.||.. ++.....+++ .+|+.+ + .|+.||+|+..+|+|||||+||+|+++|++
T Consensus 226 W~~rW~~l~V--d~e~~GkDh~~~s~~~~~~i~~~ilg~~~------P--~~~~y~~v~~~~G~KMSKSkGN~i~~~d~l 295 (510)
T PRK00750 226 WPMRWAALGV--DFEPFGKDHASASYDTSKKIAREILGGEP------P--EPFVYELFLDKKGEKISKSKGNVITIEDWL 295 (510)
T ss_pred cHHHHHHcCC--CEEeeCcccCcchHHHHHHHHHHHcCCCC------C--eeeeeeeEEeCCCCcccccCCCccCHHHHH
Confidence 11233 36789999999 9999999998 999852 2 335568999777999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhh-cCCCCCCccccH
Q 010832 407 DEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDL-KNNRLTNYTFSF 460 (499)
Q Consensus 407 ~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L-~~~~~~~~~Fd~ 460 (499)
+. ++++++|||++ +.++.++++|++
T Consensus 296 ~~-----------------------------~~pd~lR~~l~~~~~~~~~~~f~~ 321 (510)
T PRK00750 296 EY-----------------------------APPESLRLFMFARPKPAKRLDFDV 321 (510)
T ss_pred HH-----------------------------CCHHHHHHHHHhCCCCCCCCcccH
Confidence 87 48999996665 778899999998
No 40
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.84 E-value=2e-19 Score=192.22 Aligned_cols=273 Identities=15% Similarity=0.145 Sum_probs=160.5
Q ss_pred ceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCC-CccccchHHHH
Q 010832 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNS-EDANETAIGEL 206 (499)
Q Consensus 128 ~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~-~~~~~~~i~~l 206 (499)
++++|+ |+-.|+|++||||+|..+.+|+++|.||.+|++|..++..+|+.. +..+- ...|+. ..+-|.||..
T Consensus 18 ~~~~~~-tg~~psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~-lRKvp----~~~p~~~~~ylG~Pl~~- 90 (515)
T TIGR00467 18 NLYTVA-SGITPSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDP-LRKVY----PFLPEELETYLGMPLTR- 90 (515)
T ss_pred CeEEEe-cCCCCCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcc-ccccc----ccccHHHHHhCCCccee-
Confidence 368875 445599999999999999999999999999999999999999854 11110 000100 0011222211
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeecc-ccc-cCcHHHHHH
Q 010832 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-SFY-NPYIPGVID 284 (499)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~~e-s~~-~~~v~~~i~ 284 (499)
-+||. .|. ..+++.+...|.+.++.|||++++.+. ..| ++...+.+.
T Consensus 91 -----------vpdp~-----------------g~~---~s~~~h~~~~~~~~l~~~gi~~e~~s~te~Y~sG~~~~~i~ 139 (515)
T TIGR00467 91 -----------IPDPE-----------------GCK---TSYAEHFLIPFLESLPVLGINPEFIRASKQYTSGLYASQIK 139 (515)
T ss_pred -----------cCCCC-----------------CCc---HHHHHHHHHHHHHHHHHcCCeEEEEEHHHhhhcCChHHHHH
Confidence 12221 112 346888999999999999999865433 345 333333222
Q ss_pred H-HHHCCCeE--------eecCeEEEEec------CCCCCeEE-EcCCCcccccchhHHH------------HHHHH---
Q 010832 285 E-LSKQGLVE--------ESQGARVIFIE------GVNIPLII-VKSDGGFNYASTDLAA------------LWYRL--- 333 (499)
Q Consensus 285 ~-L~~~g~~y--------~~dGa~~~~~~------g~~~d~vl-~ksDG~~~Y~t~DiA~------------~~~k~--- 333 (499)
. |....-+. ++--.-|+... |.....++ +..+.+.+|.|. +++ ..||.
T Consensus 140 ~~L~~~~~I~~il~~~~~~~~~~~~~P~~pic~~cGrv~~~~~~~~~~~~v~Y~c~-cG~~g~~~~~~g~~KL~WkvdW~ 218 (515)
T TIGR00467 140 IALDHRKEISEILNEYRTSKLEENWYPISVFCENCGRDTTTVNNYDNEYSIEYSCE-CGNQESVDIYTGAIKLPWRVDWP 218 (515)
T ss_pred HHHHhHHHHHHHHHHhcCCccCCCceeeeeecCCcCccCceEEEecCCceEEEEcC-CCCEEEEeecCCCcccCCCCCcH
Confidence 2 22211111 11112233322 33222222 112234555442 221 11221
Q ss_pred ---hhcCCCeEEEEecCCccc----cHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEE-ecCCCCccccccCCcccHHHH
Q 010832 334 ---NEEKAEWIIYVTDVGQQL----HFDMVFSAAKRAGWLSADDSTYPKASHVGFGLV-LGEDGKRLRTRFSEVVRLVDL 405 (499)
Q Consensus 334 ---~~~~~d~~i~V~g~~q~~----hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V-~~~~g~KMSkR~G~~v~l~dl 405 (499)
...+.| +=-+|.||+. +-.+...+.+++|..+ | .++.|++| +..+|+|||||+||+++++|+
T Consensus 219 ~RW~~lgV~--~Ep~GkDH~~~ggsy~~~~~ia~~~l~~~~---P-----~~~~ye~v~L~~~g~KMSKS~Gn~itl~dl 288 (515)
T TIGR00467 219 ARWKIEKVT--FEPAGKDHAAAGGSYDTGVNIAKEIFQYSP---P-----VTVQYEWISLKGKGGKMSSSKGDVISVKDV 288 (515)
T ss_pred hhHhhhCcc--cccCCCCccCccCCchhHHHHHHHHhCCCC---C-----cCcEEEEEEEcCCCccccCCCCCCccHHHH
Confidence 111222 3346777765 4455544446887642 2 12345665 334578999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcccCCchhHHHHHHHHHHHHH
Q 010832 406 LDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSII 485 (499)
Q Consensus 406 l~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~n~~~YlqYa~aR~~sil 485 (499)
++. ++++++||++++.+++++++||++.+ +. .=.|-|+...+
T Consensus 289 l~~-----------------------------~~pdalR~~~l~~~~~~~ldFd~~~l-~~--------~dey~r~~~~~ 330 (515)
T TIGR00467 289 LEV-----------------------------YTPEITRFLFARTKPEFHISFDLDVI-KL--------YEDYDKFERFY 330 (515)
T ss_pred HHH-----------------------------cCHHHHHHHHhccCCCCCCcCCHHHH-HH--------HHHHHHHHHHH
Confidence 998 48999999999999999999999965 43 22455666655
Q ss_pred HH
Q 010832 486 RK 487 (499)
Q Consensus 486 rk 487 (499)
.+
T Consensus 331 ~~ 332 (515)
T TIGR00467 331 YG 332 (515)
T ss_pred Hh
Confidence 44
No 41
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=99.84 E-value=4.7e-19 Score=201.03 Aligned_cols=129 Identities=19% Similarity=0.275 Sum_probs=99.8
Q ss_pred CceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHH
Q 010832 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (499)
Q Consensus 127 ~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l 206 (499)
+++++|...-|||||+|||||+++.+++|+++|++|+.||+|......+.+|.++...+... .+- ....
T Consensus 37 ~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~---~g~----~~~~---- 105 (800)
T PRK13208 37 KPVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKY---YGI----RKDD---- 105 (800)
T ss_pred CCcEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHH---hCC----Cccc----
Confidence 56799999999999999999999999999999999999999999999999999987654321 010 0000
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeecc-----ccccCcHHH
Q 010832 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPG 281 (499)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~~e-----s~~~~~v~~ 281 (499)
+. ..+| ++..+++++.+.+.+++.+++||+.+||..+ ..|...+.+
T Consensus 106 ----------~~-~~~f------------------~~~~~~~~~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~ 156 (800)
T PRK13208 106 ----------IS-REEF------------------IELCRELTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQK 156 (800)
T ss_pred ----------CC-HHHH------------------HHHHHHHHHHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHH
Confidence 00 0011 1233456888899999999999999997432 345567899
Q ss_pred HHHHHHHCCCeEee
Q 010832 282 VIDELSKQGLVEES 295 (499)
Q Consensus 282 ~i~~L~~~g~~y~~ 295 (499)
++.+|.++|++|+.
T Consensus 157 ~f~~L~~~Gliy~~ 170 (800)
T PRK13208 157 SFLDLYKKGLIYRA 170 (800)
T ss_pred HHHHHHHCCCeeec
Confidence 99999999999963
No 42
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=99.84 E-value=8.3e-20 Score=190.57 Aligned_cols=114 Identities=18% Similarity=0.353 Sum_probs=88.1
Q ss_pred EEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHHHHH
Q 010832 130 AVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEF 209 (499)
Q Consensus 130 v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l~~~ 209 (499)
++|...-|+|+|+|||||+.+++.+|+++|.+|..|++|......+++|+.+..-|..
T Consensus 1 ~~ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~---------------------- 58 (391)
T PF09334_consen 1 FYITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEK---------------------- 58 (391)
T ss_dssp EEEEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHH----------------------
T ss_pred CEEecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHH----------------------
Confidence 4677778999999999999999999999999999999999999999999877644321
Q ss_pred HHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeec---cccccCcHHHHHHHH
Q 010832 210 YRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG---ESFYNPYIPGVIDEL 286 (499)
Q Consensus 210 y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~~---es~~~~~v~~~i~~L 286 (499)
...+| +++++.+...|++.+++|||++|.+. +..|...+++++++|
T Consensus 59 -------~g~~p------------------------~~~~~~~~~~~~~~~~~~~I~~D~F~rTt~~~h~~~v~~i~~~L 107 (391)
T PF09334_consen 59 -------QGIDP------------------------EEFCDKYSAKFKELLEALNISYDRFIRTTDDRHKEFVQEIFKRL 107 (391)
T ss_dssp -------TTS-H------------------------HHHHHHHHHHHHHHHHHTT---SEEEETTSHHHHHHHHHHHHHH
T ss_pred -------cCCCH------------------------HHHHHHHHHHHHHHHHHcCCCCcceeCCCCHHHHHHHHHHHHHH
Confidence 01111 35688888999999999999997543 345677899999999
Q ss_pred HHCCCeEeec
Q 010832 287 SKQGLVEESQ 296 (499)
Q Consensus 287 ~~~g~~y~~d 296 (499)
.++|++|+.+
T Consensus 108 ~~~G~I~~~~ 117 (391)
T PF09334_consen 108 YDNGYIYKRE 117 (391)
T ss_dssp HHTTSEEEEE
T ss_pred HhcCceeecc
Confidence 9999999754
No 43
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.83 E-value=2.1e-19 Score=190.24 Aligned_cols=244 Identities=16% Similarity=0.184 Sum_probs=167.9
Q ss_pred eEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHHHH
Q 010832 129 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 208 (499)
Q Consensus 129 ~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l~~ 208 (499)
+|.+ =..|.|||+|||||+|++++-..+|| +.-|-=+.| |.|...
T Consensus 4 ~vrt-RFAPSPTG~lHiG~artAL~n~l~Ar--~~gG~fiLR---IEDTD~----------------------------- 48 (513)
T PRK14895 4 NVIT-RFAPSPTGFLHIGSARTALFNYLFAR--HHNGKFLLR---IEDTDK----------------------------- 48 (513)
T ss_pred CeeE-eeCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEE---ECCCCc-----------------------------
Confidence 3444 34699999999999999999888888 334444444 233210
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeee--eccccccCcHHHHHHHH
Q 010832 209 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE--KGESFYNPYIPGVIDEL 286 (499)
Q Consensus 209 ~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~--~~es~~~~~v~~~i~~L 286 (499)
.+....+.+.+.++|+.||+..|. +..|.+.+.-.+.+++|
T Consensus 49 -------------------------------------~R~~~~~~~~i~~~L~WLGl~wDe~py~QSeR~~~Y~~~a~~L 91 (513)
T PRK14895 49 -------------------------------------ERSTKEAVEAIFSGLKWLGLDWNGEVIFQSKRNNLYKEAALKL 91 (513)
T ss_pred -------------------------------------cccChHHHHHHHHHHHHcCCCCCCCceeEeCcHHHHHHHHHHH
Confidence 011223345666678888887652 22344444556777888
Q ss_pred HHCCCeEee-------------------------------------cC--eEEEEec------------C-------CCC
Q 010832 287 SKQGLVEES-------------------------------------QG--ARVIFIE------------G-------VNI 308 (499)
Q Consensus 287 ~~~g~~y~~-------------------------------------dG--a~~~~~~------------g-------~~~ 308 (499)
.++|.+|.. .+ .+-|++. | .-.
T Consensus 92 i~~G~AY~CfCt~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~~~~~~iR~k~p~~~~~~~~D~v~G~~~~~~~~~~ 171 (513)
T PRK14895 92 LQNGKAYYCFTRQEEIERQRQQALENKQHFIFNSEWRDKDPSIYPTDIKPVIRLKTPREGSITIHDTLQGEVVIENSHID 171 (513)
T ss_pred HHcCCeEEecCcHHHHHHHHHhhhccCCCCCCChhhcccChhhhhcCCCeeEEEEcCCCCceEEEeecccceecccccCC
Confidence 888877730 01 1112221 1 124
Q ss_pred CeEEEcCCCcccccchhHHHHHHHHhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCC
Q 010832 309 PLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGED 388 (499)
Q Consensus 309 d~vl~ksDG~~~Y~t~DiA~~~~k~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~ 388 (499)
|+||+|+||+|||..+ ++++++ ..+++++| +|.||..+++++..+++++|+. .+.+.|+++ |.+.+
T Consensus 172 D~Vi~RsDG~ptY~~a---~vVDD~-~m~ithVI--RG~d~~~~t~~q~~l~~aLG~~------~p~~~H~pl--v~~~~ 237 (513)
T PRK14895 172 DMVLLRADGTATYMLA---VVVDDH-DMGITHII--RGDDHLTNAARQLAIYQAFGYA------VPSMTHIPL--IHGAD 237 (513)
T ss_pred CcEEEEeCCCcchhhH---HHHHHH-hcCCCEEE--ECchHhhhHHHHHHHHHHcCCC------CCeEEEEEe--EEcCC
Confidence 8999999999999975 778887 47999998 9999999999999999999984 578999976 88789
Q ss_pred CCccccccCCcccHHHHHHHHHHH--HHHHHHHhcCCCCCCHH--HHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHh
Q 010832 389 GKRLRTRFSEVVRLVDLLDEAKNR--SKAVLIERGKDKEWTEE--ELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQML 464 (499)
Q Consensus 389 g~KMSkR~G~~v~l~dll~e~~~~--a~~~~~~~~~~~~~~~~--~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~ 464 (499)
|+|||||.|. .++.++.+.+... ..+.+.. .+|+.. |+... .+.+..|.+.+-..++..||++++.
T Consensus 238 g~KLSKR~g~-~~i~~~r~~G~~Peai~n~la~----LG~s~~~~e~~~~-----~el~~~F~~~~v~~s~~~FD~~KL~ 307 (513)
T PRK14895 238 GAKLSKRHGA-LGIEAYKDMGYLPESLCNYLLR----LGWSHGDDEIISM-----TQAIDWFNLDSLGKSPSKLDFAKMN 307 (513)
T ss_pred CCccccccCc-hhHHHHHHCCCCHHHHHHHHHH----hCCCCCCcCCCCH-----HHHHhhCCHHhCcCCcCcCCHHHHH
Confidence 9999999995 4788887776532 3444442 123221 11111 2347788999999999999999999
Q ss_pred cccC
Q 010832 465 NDKG 468 (499)
Q Consensus 465 ~~~~ 468 (499)
++|+
T Consensus 308 wlN~ 311 (513)
T PRK14895 308 SLNA 311 (513)
T ss_pred HHHH
Confidence 9864
No 44
>PLN02610 probable methionyl-tRNA synthetase
Probab=99.81 E-value=1.4e-18 Score=195.01 Aligned_cols=116 Identities=14% Similarity=0.285 Sum_probs=95.2
Q ss_pred CceEEEEecCCCCCCCCccchhhHh-HHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHH
Q 010832 127 VKKAVVDFSSPNIAKEMHVGHLRST-IIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (499)
Q Consensus 127 ~~~v~Ve~~SpNp~~plHiGH~R~~-iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~ 205 (499)
.++++|...-|+|||++||||++++ +..|+++|++|..|++|......+++|+.+..-+.. .
T Consensus 16 ~~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~-----------~------ 78 (801)
T PLN02610 16 KRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALE-----------E------ 78 (801)
T ss_pred CCCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHH-----------c------
Confidence 4579999999999999999999975 668999999999999999999999999977643311 0
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeec---cccccCcHHHH
Q 010832 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG---ESFYNPYIPGV 282 (499)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~~---es~~~~~v~~~ 282 (499)
.. .| +++++.+.+.|++.+++|||+||.+. +..|...++++
T Consensus 79 ------------g~------------------~p------~e~~d~~~~~~~~~~~~l~i~~D~f~rT~~~~h~~~vq~~ 122 (801)
T PLN02610 79 ------------NC------------------TP------KEICDKYHAIHKEVYDWFDISFDKFGRTSTPQQTEICQAI 122 (801)
T ss_pred ------------CC------------------CH------HHHHHHHHHHHHHHHHHcCCccccCccCCCHHHHHHHHHH
Confidence 01 11 45688888899999999999997543 23567789999
Q ss_pred HHHHHHCCCeEee
Q 010832 283 IDELSKQGLVEES 295 (499)
Q Consensus 283 i~~L~~~g~~y~~ 295 (499)
+.+|.++|++|+.
T Consensus 123 f~~L~~~G~Iy~~ 135 (801)
T PLN02610 123 FKKLMENNWLSEN 135 (801)
T ss_pred HHHHHHCCCEEEe
Confidence 9999999999974
No 45
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=99.81 E-value=2.9e-18 Score=196.07 Aligned_cols=132 Identities=20% Similarity=0.232 Sum_probs=100.5
Q ss_pred CCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHH
Q 010832 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (499)
Q Consensus 126 ~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~ 205 (499)
.++++.|...-||+||+|||||+++.++.|+++|+.|+.|++|.+....+.+|.++...++... ... +....+
T Consensus 31 ~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~~---~~~----g~~~~~ 103 (861)
T TIGR00422 31 NKPPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGIATQVKVEKKL---GAE----GKTKHD 103 (861)
T ss_pred CCCeEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcCCCcHHHHHHHHh---ccc----CCchhh
Confidence 3567999999999999999999999999999999999999999999999999998876653221 100 000000
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeecc-----ccccCcHH
Q 010832 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIP 280 (499)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~~e-----s~~~~~v~ 280 (499)
+ |.++.++..+++++.+...+++.+++||+++||..+ ..|...+.
T Consensus 104 -----------~-------------------~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~ 153 (861)
T TIGR00422 104 -----------L-------------------GREEFREKIWEWKEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVK 153 (861)
T ss_pred -----------C-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHH
Confidence 0 011112233456888889999999999999998543 23556799
Q ss_pred HHHHHHHHCCCeEe
Q 010832 281 GVIDELSKQGLVEE 294 (499)
Q Consensus 281 ~~i~~L~~~g~~y~ 294 (499)
+++.+|.++|++|+
T Consensus 154 ~~F~~L~~~GlIy~ 167 (861)
T TIGR00422 154 EAFVRLYEKGLIYR 167 (861)
T ss_pred HHHHHHHHCCCeee
Confidence 99999999999996
No 46
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=99.81 E-value=2.2e-19 Score=187.99 Aligned_cols=197 Identities=15% Similarity=0.155 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHHHHcCCeee-eeccccccCcHHHHHHHHHHCCCeEe-----------------------ecC-------
Q 010832 249 CEISRKEFDKVYKRLRVDLE-EKGESFYNPYIPGVIDELSKQGLVEE-----------------------SQG------- 297 (499)
Q Consensus 249 ~~~~~~~~~~~~~~LgI~fd-~~~es~~~~~v~~~i~~L~~~g~~y~-----------------------~dG------- 297 (499)
++.+.+.+.++|+.|||.+| ++.+|...+...+++++|.++|++|. .+|
T Consensus 50 ~~~~~~~I~e~L~wLGI~~De~y~QSer~~~y~~~~e~L~e~G~AY~C~Ct~eel~~~r~~~~~~~~~~~y~~~cr~l~~ 129 (445)
T PRK12558 50 KQEYADAIAEDLKWLGINWDRTFRQSDRFDRYDEAAEKLKAAGRLYPCYETPEELELKRKIQLSRGLPPIYDRAALKLTE 129 (445)
T ss_pred hHHHHHHHHHHHHHcCCCCCccccHHHHHHHHHHHHHHHHHCCCEEEecCchHHHHHHHHHHHhCCCCCCCCcccccCCH
Confidence 34556788889999999996 56666544577899999999999884 011
Q ss_pred -------------eEEEEec-----------C-------CCCCeEEEcCCCcccccchhHHHHHHHHhhcCCCeEEEEec
Q 010832 298 -------------ARVIFIE-----------G-------VNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTD 346 (499)
Q Consensus 298 -------------a~~~~~~-----------g-------~~~d~vl~ksDG~~~Y~t~DiA~~~~k~~~~~~d~~i~V~g 346 (499)
++-|++. | .-.|+||.|+||.|||.- |..++.. ..+.+++| .|
T Consensus 130 ~~~~~~~~~g~~~~iR~k~~~~~~~~~D~i~G~~~~~~~~~~D~Vi~R~dg~PtY~f---A~vVDD~-~m~ITHVi--RG 203 (445)
T PRK12558 130 EEKAALEAEGRKPHWRFKLDDEPISWDDLIRGEQSIDAASLSDPVLIRADGSYLYTL---PSVVDDI-DMGITHII--RG 203 (445)
T ss_pred HHHHhHHhcCCCceEEEecCCCceEEEEEeeeEeecccccCCCeEEEecCCCccccc---cceeccc-cCCCCEEE--ec
Confidence 1112221 1 125889999999999974 4556665 46888886 99
Q ss_pred CCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccHHHHHHHHH--HHHHHHHHHhcCCC
Q 010832 347 VGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAK--NRSKAVLIERGKDK 424 (499)
Q Consensus 347 ~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~dll~e~~--~~a~~~~~~~~~~~ 424 (499)
.||-...+++..+.+++|+. .+.+.|++ ++++++|+|||||.|. +++.++.+.+. +...+.+..-
T Consensus 204 ~d~l~~t~~q~~l~~alg~~------~P~f~H~p--li~~~~g~KLSKR~g~-~sv~~~r~~G~~Peai~n~la~l---- 270 (445)
T PRK12558 204 EDHVTNTAVQIQIFEALGAK------PPVFAHLS--LLTGADGKGLSKRLGG-LSIRSLREDGIEPMAIASLLARL---- 270 (445)
T ss_pred hhhhhCCHHHHHHHHHhCCC------CCeEEEcc--cccCCCcccccccCCC-cCHHHHHHCCCCHHHHHHHHHHH----
Confidence 99988888888899999984 47899995 5888999999999995 68998887765 3345554432
Q ss_pred CCCHHHHHHHHHHhh-hhHHHHHhhcCCCCCCccccHHHHhcccC
Q 010832 425 EWTEEELEQTAEAVG-YGAAKYFDLKNNRLTNYTFSFDQMLNDKG 468 (499)
Q Consensus 425 ~~~~~~~~~~a~~vg-~~airy~~L~~~~~~~~~Fd~~~~~~~~~ 468 (499)
+|+..+ +++ +. .+.+..|.+.+-..++..||.+++..+|+
T Consensus 271 G~s~~~-~e~---~~~~eli~~F~l~~~~~~~~~fd~~KL~w~N~ 311 (445)
T PRK12558 271 GTSDPV-EPY---TSMEELAESFDLSSFSRAPAKFDPEDLERLNA 311 (445)
T ss_pred cCCCCC-ccc---CCHHHHHHhCCHhhCCCccccCCHHHHHHHHH
Confidence 232211 010 11 23478899999999999999999999864
No 47
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=99.80 E-value=9.7e-18 Score=191.79 Aligned_cols=131 Identities=20% Similarity=0.221 Sum_probs=97.8
Q ss_pred CceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHH
Q 010832 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (499)
Q Consensus 127 ~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l 206 (499)
+++++|...-||+||.|||||+++.++.|+++|+.|..||+|.+....+.+|..+...++...... +....++
T Consensus 35 ~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gi~~e~~ve~~l~~~-------g~~~~~~ 107 (874)
T PRK05729 35 KKPFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHAGIATQMVVERQLAAE-------GKSRHDL 107 (874)
T ss_pred CCCEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCccchhhHHHHHHHHHhc-------CCChHHC
Confidence 456999999999999999999999999999999999999999999999999986654332110000 0000000
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeecc-----ccccCcHHH
Q 010832 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPG 281 (499)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~~e-----s~~~~~v~~ 281 (499)
|-++.++..+++++.+...+++.+++||+++||..+ ..|...+.+
T Consensus 108 ------------------------------~re~f~~~~~~w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~ 157 (874)
T PRK05729 108 ------------------------------GREKFLEKVWEWKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKAVRE 157 (874)
T ss_pred ------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHH
Confidence 001122333456888889999999999999998543 234567999
Q ss_pred HHHHHHHCCCeEe
Q 010832 282 VIDELSKQGLVEE 294 (499)
Q Consensus 282 ~i~~L~~~g~~y~ 294 (499)
++.+|.++|++|+
T Consensus 158 ~F~~L~~~GlIyr 170 (874)
T PRK05729 158 VFVRLYEKGLIYR 170 (874)
T ss_pred HHHHHHHCCCEee
Confidence 9999999999996
No 48
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=3.3e-17 Score=180.77 Aligned_cols=130 Identities=20% Similarity=0.261 Sum_probs=99.7
Q ss_pred ceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHHH
Q 010832 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (499)
Q Consensus 128 ~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (499)
+++.|.-.-|||||.|||||+-+..+-|+|+|+.|++||+|...-+.+.+|.......+.....-+
T Consensus 33 ~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk~l~~~g-------------- 98 (877)
T COG0525 33 PPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAAEG-------------- 98 (877)
T ss_pred CCcEEeCCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCCCchHHHHHHHHHHHcC--------------
Confidence 559999999999999999999999999999999999999999999999999876655432110000
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeecccc-----ccCcHHHH
Q 010832 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESF-----YNPYIPGV 282 (499)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~~es~-----~~~~v~~~ 282 (499)
..+.+- .|+ +-++..+++.+.+...+.+.+++||+++||..|-+ ++..++++
T Consensus 99 ------~~r~d~-------gRe----------~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~ 155 (877)
T COG0525 99 ------ITRHDL-------GRE----------EFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEA 155 (877)
T ss_pred ------CCcccc-------CHH----------HHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHH
Confidence 000000 011 22233345678899999999999999999977633 34578999
Q ss_pred HHHHHHCCCeEe
Q 010832 283 IDELSKQGLVEE 294 (499)
Q Consensus 283 i~~L~~~g~~y~ 294 (499)
+-+|.++|++|+
T Consensus 156 Fv~Ly~~GlIYr 167 (877)
T COG0525 156 FVRLYEKGLIYR 167 (877)
T ss_pred HHHHHHCCceee
Confidence 999999999995
No 49
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=99.73 E-value=4.5e-18 Score=172.20 Aligned_cols=262 Identities=15% Similarity=0.180 Sum_probs=129.9
Q ss_pred CceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCC--CccccchHH
Q 010832 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNS--EDANETAIG 204 (499)
Q Consensus 127 ~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~--~~~~~~~i~ 204 (499)
+..+++ -++-.|.|..||||+|..+.+|+++|.|+.+|++|..++..+|... +..+ ....|+. ..+-+.|+.
T Consensus 22 ~~~~v~-~sG~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~-lRKv----P~~~p~~~~~~ylg~Plt 95 (360)
T PF01921_consen 22 KEPYVF-ASGISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDP-LRKV----PPNVPNPELEKYLGKPLT 95 (360)
T ss_dssp -SEEEE-EEEE--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB----------TTS-CC-CCCCTTSBTT
T ss_pred CccEEE-ecCCCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCc-ccCC----CCCCChHHHHHhcCCccc
Confidence 455666 7899999999999999999999999999999999999999999866 2222 1223332 123333333
Q ss_pred HHHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeec-ccccc-CcHHHH
Q 010832 205 ELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG-ESFYN-PYIPGV 282 (499)
Q Consensus 205 ~l~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~~-es~~~-~~v~~~ 282 (499)
.+ +||. .+.+ .+++.+...|.+.|+.|||++++.+ ...|. +...+.
T Consensus 96 ~V------------PdP~-----------------G~~~---SyaeH~~~~~~~~L~~~gie~e~~s~te~Y~sG~y~~~ 143 (360)
T PF01921_consen 96 RV------------PDPF-----------------GCHE---SYAEHFNAPFEEFLDEFGIEYEFISQTEMYRSGRYDEQ 143 (360)
T ss_dssp TS------------B-TT-----------------SSSS---CHHHHHHHHHHHHHHTTT---EEEECCCCCCTTTTHHH
T ss_pred cC------------CCCC-----------------CCCc---cHHHHHHHHHHHHHHHcCCceEEEeHHHhhhCCchHHH
Confidence 21 3331 1122 2478888999999999999986433 24553 322222
Q ss_pred HHH-HHHCCCeE--------eecCeEEEEec------CC-CCCeEEEcC--CCcccccchhHHHH------------HHH
Q 010832 283 IDE-LSKQGLVE--------ESQGARVIFIE------GV-NIPLIIVKS--DGGFNYASTDLAAL------------WYR 332 (499)
Q Consensus 283 i~~-L~~~g~~y--------~~dGa~~~~~~------g~-~~d~vl~ks--DG~~~Y~t~DiA~~------------~~k 332 (499)
+.. |.+..-+. +.-..-|+... |. +...|+--. .++.+|.|+.+++. .||
T Consensus 144 i~~aL~~~~~I~~Il~~~~~~~~~~~y~Pf~piC~~cGri~tt~v~~~d~~~~~v~Y~c~~cG~~g~~~i~~g~gKL~Wk 223 (360)
T PF01921_consen 144 IRTALENRDEIREILNEYRGRERPETYSPFLPICEKCGRIDTTEVTEYDPEGGTVTYRCEECGHEGEVDITGGNGKLQWK 223 (360)
T ss_dssp HCHHHHTHHHHHHHHHHHHHHT--TT--SEEEEETTTEE--EEEEEEE--SSSEEEEE--TTS---EEETTTT-EEE-HH
T ss_pred HHHHHHhHHHHHHHHHHhcCcCCCCCeeeeeeeccccCCcccceeeEeecCCCEEEEEecCCCCEEEEecCCCcccccCC
Confidence 221 11111111 01111122211 22 111222222 35566766433321 222
Q ss_pred ------HhhcCCCeEEEEecCCccc---cHHHHHHHH-HHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccH
Q 010832 333 ------LNEEKAEWIIYVTDVGQQL---HFDMVFSAA-KRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRL 402 (499)
Q Consensus 333 ------~~~~~~d~~i~V~g~~q~~---hf~~~~~~~-~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l 402 (499)
+...+.| +--.|.||.. -+..-..|+ +.+|+.| | .|+.|++++..+|.|||||+||++++
T Consensus 224 vDW~mRW~~lgVd--fEp~GKDH~~~GGS~d~~~~I~~~i~g~~p---P-----~~~~YE~~~~~g~~kmSsSkG~~~t~ 293 (360)
T PF01921_consen 224 VDWPMRWAALGVD--FEPFGKDHASPGGSYDTSKRIAREILGYEP---P-----VPFPYEFFLDKGGGKMSSSKGNGITP 293 (360)
T ss_dssp HHHHHHHHHTT-S--EEEEEHHHHCTTSHHHHHHHHHHHCC-------------EEEEE--EEES--------------H
T ss_pred CcChhhhhhcCce--eccCCCccCCCCCChhhHHHHHHHHhCCCC---C-----CCCCeeEEEeCCCcccccCCCCccCH
Confidence 2223444 3346777766 677777888 7889853 2 67899999977777999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHH-HHhc
Q 010832 403 VDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFD-QMLN 465 (499)
Q Consensus 403 ~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~-~~~~ 465 (499)
+|+|+-+ .++.+||++++++|++..+|+++ .+.+
T Consensus 294 ~e~L~~~-----------------------------~PE~lr~l~~~~~P~~~~~~~~~~~i~~ 328 (360)
T PF01921_consen 294 EEWLEYA-----------------------------PPESLRYLMARTKPNKAKDFSFDLVIPR 328 (360)
T ss_dssp HHHHTTS------------------------------HHHHHHHHHCS-TTS-EEE--STTHHH
T ss_pred HHHHHhc-----------------------------CHHHHHHHHcccCCCcceEeccCcchHH
Confidence 9999874 79999999999999999999998 5544
No 50
>PLN02943 aminoacyl-tRNA ligase
Probab=99.72 E-value=1.8e-16 Score=182.04 Aligned_cols=132 Identities=15% Similarity=0.176 Sum_probs=99.2
Q ss_pred CCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHH
Q 010832 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (499)
Q Consensus 126 ~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~ 205 (499)
.+++.+|...-|||||+|||||+++.++.|+++|+.|..||+|.+....+.+|..+...++......+- .. .+
T Consensus 86 ~~~~f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek~l~~~~~----~~---~~ 158 (958)
T PLN02943 86 GGDPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLASEGI----KR---TD 158 (958)
T ss_pred CCCCEEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccchhHHHHHHHHHHcCC----Ch---hh
Confidence 356699988899999999999999999999999999999999999999999998777554321100000 00 00
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeecc-----ccccCcHH
Q 010832 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIP 280 (499)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~~e-----s~~~~~v~ 280 (499)
+ ...+| ++..+++++.+...+++.+++||+++||..+ ..|...+.
T Consensus 159 -----------~-~re~f------------------~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~ 208 (958)
T PLN02943 159 -----------L-GRDEF------------------TKRVWEWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVV 208 (958)
T ss_pred -----------C-CHHHH------------------HHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHH
Confidence 0 00112 2333456888889999999999999998544 23456789
Q ss_pred HHHHHHHHCCCeEe
Q 010832 281 GVIDELSKQGLVEE 294 (499)
Q Consensus 281 ~~i~~L~~~g~~y~ 294 (499)
+++.+|.++|++|+
T Consensus 209 ~~F~~l~~~Gliyr 222 (958)
T PLN02943 209 EAFVRLHEKGLIYQ 222 (958)
T ss_pred HHHHHHHHCCCEEe
Confidence 99999999999985
No 51
>PF03485 Arg_tRNA_synt_N: Arginyl tRNA synthetase N terminal domain; InterPro: IPR005148 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found at the N terminus of Arginyl tRNA synthetase, also called additional domain 1 (Add-1). It is about 140 residues long and it has been suggested that this domain will be involved in tRNA recognition [].; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1F7V_A 1F7U_A 1BS2_A 2ZUE_A 2ZUF_A 1IQ0_A 3GDZ_B.
Probab=99.72 E-value=1.3e-17 Score=136.94 Aligned_cols=82 Identities=39% Similarity=0.596 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHhhC-CCCCCCcccccc-cCCCCcccccchHHHHHHhhcCCCCCCCChHHHHHHHHHhCCCCCCeeeEEE
Q 010832 14 ELEKVFDLALKATV-PNETDVRPLIAA-CTAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSV 91 (499)
Q Consensus 14 ~~~~~l~~~l~~~~-~~~~~~~~~v~~-~~~~~gd~~~~~a~~lak~~~~~~~~~~~p~~iA~~i~~~l~~~~~~~~v~v 91 (499)
++++.|.++|.... .......+.|+. |++++||||||+||.+||.+| ++|++||++|++.|...+.|++|++
T Consensus 2 ~l~~~i~~~l~~~~~~~~~~~~~~i~~~~~~~~GD~~~n~a~~lak~~k------~~P~~iA~~i~~~l~~~~~i~~vev 75 (85)
T PF03485_consen 2 QLKKAISEALKKAFGIDLEEIEIQIEKPPNPKFGDYQTNIAFRLAKKLK------KNPREIAEEIAEKLEKSPIIEKVEV 75 (85)
T ss_dssp HHHHHHHHHHHHCHSTTCCCHGGGEEE-SSGGG-SEEEEHHHHHHHHTT------S-HHHHHHHHHHCHCTTTTEEEEEE
T ss_pred hHHHHHHHHHHHHhcccccccceEEEcCCCCCceeeeccchHHHHHHcC------CCHHHHHHHHHHhcCCCCCEEEEEE
Confidence 45566666666542 111223445664 578999999999999999999 9999999999999988878999999
Q ss_pred ecCCeEEEEe
Q 010832 92 AGPGFVNVVL 101 (499)
Q Consensus 92 ag~GfiN~~l 101 (499)
+|||||||+|
T Consensus 76 ~gpGFiN~~L 85 (85)
T PF03485_consen 76 AGPGFINFFL 85 (85)
T ss_dssp ETTTEEEEEE
T ss_pred cCCcEEEEeC
Confidence 9999999996
No 52
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=99.72 E-value=1.1e-16 Score=167.00 Aligned_cols=138 Identities=17% Similarity=0.164 Sum_probs=103.2
Q ss_pred CCeEEEcCCCcccccchhHHHHHHHHhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecC
Q 010832 308 IPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE 387 (499)
Q Consensus 308 ~d~vl~ksDG~~~Y~t~DiA~~~~k~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~ 387 (499)
.|+||.|+||.|||.- |..++.. ..+.+++| .|.||-...+.+..+.+++|+.+ .+.|.|++ ++.+.
T Consensus 165 ~D~Vi~R~Dg~PtY~f---A~vVDD~-~mgIThVi--RG~d~l~~tp~Qi~Ly~aLg~~~-----pp~f~Hlp--li~~~ 231 (433)
T PRK12410 165 DSFVILRADKTPTYNF---ACAVDDM-LYDISLII--RGEDHVSNTPKQILIREALGYNK-----EITYAHLP--IILNE 231 (433)
T ss_pred CCeEEEcCCCCccccc---cchhchh-hcCCCEEE--echhhhhCcHHHHHHHHHcCCCC-----CCeEEEee--eeeCC
Confidence 4799999999999974 5556766 46888886 99999888888878999999941 24899995 58889
Q ss_pred CCCccccccCCcccHHHHHHHHHH--HHHHHHHHhcCCCCCCH-HHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHh
Q 010832 388 DGKRLRTRFSEVVRLVDLLDEAKN--RSKAVLIERGKDKEWTE-EELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQML 464 (499)
Q Consensus 388 ~g~KMSkR~G~~v~l~dll~e~~~--~a~~~~~~~~~~~~~~~-~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~ 464 (499)
+|+|||||.| ..++.++.+.+.. ...+.+..-| |+. +|+... .+.+..|.+.+-..++..||++++.
T Consensus 232 ~g~KLSKR~~-~~~v~~~r~~G~~PeAi~n~l~~lG----~~~~~e~~~~-----~eli~~F~~~~i~~~~~~~d~~kL~ 301 (433)
T PRK12410 232 EGKKMSKRDN-ASSVKWLLEQGFLPSAIANYLILLG----NKTPKEIFTL-----EEAIEWFDIEKISKSPAKFDLKKLR 301 (433)
T ss_pred CCCeeecccC-hhhHHHHHHCCCCHHHHHHHHHHhC----CCCcccccCH-----HHHHHhCCHhhCCCccccCCHHHHH
Confidence 9999999999 5588888877652 2344444322 211 122111 2457788999989999999999999
Q ss_pred cccC
Q 010832 465 NDKG 468 (499)
Q Consensus 465 ~~~~ 468 (499)
.+|+
T Consensus 302 ~~N~ 305 (433)
T PRK12410 302 FINR 305 (433)
T ss_pred HHHH
Confidence 8864
No 53
>PLN02627 glutamyl-tRNA synthetase
Probab=99.72 E-value=1.4e-16 Score=169.16 Aligned_cols=137 Identities=15% Similarity=0.146 Sum_probs=103.2
Q ss_pred CCeEEEcCCCcccccchhHHHHHHHHhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecC
Q 010832 308 IPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE 387 (499)
Q Consensus 308 ~d~vl~ksDG~~~Y~t~DiA~~~~k~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~ 387 (499)
.|+||.|+||.|||.- |..++.. ..+.+++| .|.||-..-+++..+.+++||. .+.+.|++ +|+++
T Consensus 224 ~D~Vi~R~DG~PtY~f---A~vVDD~-~mgITHVi--RG~D~l~nTpkQi~ly~aLg~~------~P~f~Hlp--li~~~ 289 (535)
T PLN02627 224 GDFVLLRSNGQPVYNF---CVAVDDA-TMGITHVI--RAEEHLPNTLRQALIYKALGFP------MPRFAHVS--LILAP 289 (535)
T ss_pred CCeEEEecCCCccccc---cceeccc-ccCCcEEE--echhhhcChHHHHHHHHHcCCC------CCeEEEcc--ceeCC
Confidence 5899999999999974 5556665 46888886 9999988888888899999995 46899995 58889
Q ss_pred CCCccccccCCcccHHHHHHHHHH--HHHHHHHHhcCCCCCCH---HHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHH
Q 010832 388 DGKRLRTRFSEVVRLVDLLDEAKN--RSKAVLIERGKDKEWTE---EELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQ 462 (499)
Q Consensus 388 ~g~KMSkR~G~~v~l~dll~e~~~--~a~~~~~~~~~~~~~~~---~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~ 462 (499)
+|+|||||.| .+++.++.+.+.. ...+.+.. .+|+. +|+-.. .+.+..|.+.+-..++..||.++
T Consensus 290 ~g~KLSKR~~-~~~v~~~r~~G~~PeAi~nyla~----LGws~~~~~e~~~~-----~eli~~F~l~~v~~s~~~fD~~K 359 (535)
T PLN02627 290 DRSKLSKRHG-ATSVGQFREMGYLPDAMVNYLAL----LGWNDGTENEIFTL-----EELVEKFSIDRINKSGAVFDSTK 359 (535)
T ss_pred CCCccccccC-CccHHHHHHCCCCHHHHHHHHHH----hCCCCCCCCCcCCH-----HHHHHhCCHhhCCCcccccCHHH
Confidence 9999999998 4588888776552 23444432 23331 122111 23477899999999999999999
Q ss_pred HhcccC
Q 010832 463 MLNDKG 468 (499)
Q Consensus 463 ~~~~~~ 468 (499)
+.++|+
T Consensus 360 L~wlN~ 365 (535)
T PLN02627 360 LKWMNG 365 (535)
T ss_pred HHHHHH
Confidence 999864
No 54
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.71 E-value=7.5e-17 Score=172.99 Aligned_cols=231 Identities=16% Similarity=0.084 Sum_probs=160.0
Q ss_pred CceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHH
Q 010832 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (499)
Q Consensus 127 ~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l 206 (499)
+.+|+. .+.|+|||+|||||+|++++-+.+|| +|...+.--++|....+ .
T Consensus 99 ~g~V~t-RFaPsPtG~LHIGharaalln~~~Ar-----~~~G~~iLRidDTDpk~----------------------~-- 148 (567)
T PRK04156 99 KGKVVM-RFAPNPSGPLHLGHARAAILNDEYAK-----MYGGKFILRFEDTDPRT----------------------K-- 148 (567)
T ss_pred CCeEEE-EeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeEccCCCCc----------------------c--
Confidence 455666 58999999999999999999999999 45666666666632100 0
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeee-eccccccCcHHHHHHH
Q 010832 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE-KGESFYNPYIPGVIDE 285 (499)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~-~~es~~~~~v~~~i~~ 285 (499)
+....+.+.+.++++.||+..|. ...|.|.+...+.+++
T Consensus 149 ----------------------------------------R~~~e~~~~I~edL~wLGl~wD~~~~qSdr~~~y~~~a~~ 188 (567)
T PRK04156 149 ----------------------------------------RPDPEAYDMILEDLKWLGVKWDEVVIQSDRLEIYYEYARK 188 (567)
T ss_pred ----------------------------------------cchHHHHHHHHHHHHHcCCCCCCccCcccCHHHHHHHHHH
Confidence 00111225667788888887652 3346666667788888
Q ss_pred HHHCCCeEee----------------------------------------cCeEEEEecCC-----C--CCeEEEcCCCc
Q 010832 286 LSKQGLVEES----------------------------------------QGARVIFIEGV-----N--IPLIIVKSDGG 318 (499)
Q Consensus 286 L~~~g~~y~~----------------------------------------dGa~~~~~~g~-----~--~d~vl~ksDG~ 318 (499)
|+++|.+|.. +|..++++..+ . .|+|++|.+.+
T Consensus 189 Li~~G~AY~C~cs~ee~~~~r~~g~~~~~R~~~~ee~l~~~e~m~~G~~~~g~~vlR~k~d~~~~n~~~rD~v~~R~~~~ 268 (567)
T PRK04156 189 LIEMGGAYVCTCDPEEFKELRDAGKPCPHRDKSPEENLELWEKMLDGEYKEGEAVVRVKTDLEHPNPSVRDWVAFRIVKT 268 (567)
T ss_pred HHHcCCCccCCCCHHHHHHHHhcCCCCCCcCCCHHHHHHHHHHhhcCccccCCeEEEEECcccCCCCCccccEEEEEcCC
Confidence 8888888841 11233344321 1 46788876432
Q ss_pred ---------ccccchhHHHHHHHHhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCC
Q 010832 319 ---------FNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG 389 (499)
Q Consensus 319 ---------~~Y~t~DiA~~~~k~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g 389 (499)
..|.|=|+|..++.. ..+.+++| .|.+|..+-+++..+.++||+. .+.|.|+ ++++ .+|
T Consensus 269 ~h~~~Gd~~~i~PtY~fA~~VDD~-l~GITHVi--Rg~d~~~~t~~Q~~l~~~Lg~~------~P~~~H~--~~L~-~~g 336 (567)
T PRK04156 269 PHPRVGDKYRVWPTYNFAVAVDDH-LLGVTHVL--RGKDHIDNTEKQRYIYDYFGWE------YPETIHY--GRLK-IEG 336 (567)
T ss_pred CccccCCCeEEEEEeccCceeeec-CCCCCeEE--cccccccChHHHHHHHHHcCCC------CceEEEc--ceec-CCC
Confidence 224444667666665 46888886 9999999888888899999984 3789998 5576 578
Q ss_pred Ccccccc-------C--------CcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCC-
Q 010832 390 KRLRTRF-------S--------EVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRL- 453 (499)
Q Consensus 390 ~KMSkR~-------G--------~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~- 453 (499)
.|||||+ | +..|+..|...+ +.++|||.|++....+
T Consensus 337 ~kLSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrrG----------------------------~~PeAi~~fl~~lG~s~ 388 (567)
T PRK04156 337 FVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRG----------------------------ILPEAIRELIIEVGVKE 388 (567)
T ss_pred ceeecccchhccccCccccccCCchHHHHHHHHcC----------------------------CCHHHHHHHHHHhCCCC
Confidence 8999998 4 234555555443 5789999999988765
Q ss_pred CCccccHHHHhccc
Q 010832 454 TNYTFSFDQMLNDK 467 (499)
Q Consensus 454 ~~~~Fd~~~~~~~~ 467 (499)
++.+|+|+.+.+.+
T Consensus 389 ~~~~~~~~~L~~~n 402 (567)
T PRK04156 389 TDATISWENLYAIN 402 (567)
T ss_pred CCcccCHHHHHHHH
Confidence 99999999887654
No 55
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.71 E-value=1.7e-16 Score=153.97 Aligned_cols=216 Identities=19% Similarity=0.186 Sum_probs=146.7
Q ss_pred cCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHHHHHHHHHh
Q 010832 135 SSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSK 214 (499)
Q Consensus 135 ~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~ 214 (499)
-.|+|||+||+||+|++++....||- ..| ...--|.|... .
T Consensus 6 fAPsPtG~LHlG~~~~al~n~l~ar~--~~G---~~ilRieDtd~--------------------~-------------- 46 (239)
T cd00808 6 FAPSPTGFLHIGGARTALFNYLFARK--HGG---KFILRIEDTDQ--------------------E-------------- 46 (239)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHHH--cCC---eEEEEECcCCC--------------------C--------------
Confidence 46999999999999999999888885 334 23333444211 0
Q ss_pred cccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeee----------eccccccCcHHHHHH
Q 010832 215 NRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE----------KGESFYNPYIPGVID 284 (499)
Q Consensus 215 ~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~----------~~es~~~~~v~~~i~ 284 (499)
+....+.+.+.++++.||+..|. +..|.+.+...++++
T Consensus 47 --------------------------------r~~~~~~~~i~~dL~wlGl~~d~~~~~~g~~~~~~QS~r~~~y~~~~~ 94 (239)
T cd00808 47 --------------------------------RSVPEAEEAILEALKWLGLDWDEGPDVGGPYGPYRQSERLEIYRKYAE 94 (239)
T ss_pred --------------------------------CCchHHHHHHHHHHHHcCCCCCcCCccCCCCCCEeeeCCHHHHHHHHH
Confidence 00112234666789999998864 223444455678888
Q ss_pred HHHHCCCeEeecCeEEEEecCCCCCeEEEcCCCcccccchhHHHHHHHHhhcCCCeEEEEecCCccccHHHHHHHHHHcC
Q 010832 285 ELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAG 364 (499)
Q Consensus 285 ~L~~~g~~y~~dGa~~~~~~g~~~d~vl~ksDG~~~Y~t~DiA~~~~k~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lG 364 (499)
+|.++| ||.|+|... ...+.. ..+.+++ |+|.||..+.+++..+++++|
T Consensus 95 ~L~~~g-------------------------dg~ptY~~a---~~vDD~-~~~ithV--iRG~D~~~~t~~q~~l~~aLg 143 (239)
T cd00808 95 KLLEKG-------------------------DGFPTYHLA---NVVDDH-LMGITHV--IRGEEHLSSTPKQILLYEALG 143 (239)
T ss_pred HHHHcC-------------------------CCCcccccH---HHHhHH-hcCCCEE--EEChhhhhChHHHHHHHHHcC
Confidence 998877 799999854 445665 4788888 599999999999999999999
Q ss_pred CCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccHHHHHHHHHHH--HHHHHHHhcCCCCCCHHHHHHHHHHhh-hh
Q 010832 365 WLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNR--SKAVLIERGKDKEWTEEELEQTAEAVG-YG 441 (499)
Q Consensus 365 ~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~dll~e~~~~--a~~~~~~~~~~~~~~~~~~~~~a~~vg-~~ 441 (499)
+. .+.+.|++ ++.+.+|.|||||.|+ .+++.+.+.+... ..+.+..- ++++.+..+ ... .+
T Consensus 144 ~~------~p~~~h~p--ll~~~~g~KLSKR~~~-~~l~~lr~~G~~p~ai~~~l~~l----G~~~~~~~~---~~~~~~ 207 (239)
T cd00808 144 WE------PPKFAHLP--LILNPDGKKLSKRKGD-TSISDYREEGYLPEALLNYLALL----GWSPPDGEE---FFTLEE 207 (239)
T ss_pred CC------CCceEeec--cccCCCCCcccCCCCC-ccHHHHHHCCCCHHHHHHHHHHc----CCCCCCCCC---cCCHHH
Confidence 94 36788984 5767889999999998 6888887655432 23333221 111110000 011 12
Q ss_pred HHHHHhhcCCCCCCccccHHHHhcccC
Q 010832 442 AAKYFDLKNNRLTNYTFSFDQMLNDKG 468 (499)
Q Consensus 442 airy~~L~~~~~~~~~Fd~~~~~~~~~ 468 (499)
.++.|.+..-.+++..||++++..++.
T Consensus 208 l~~~f~~~~~~~~~~~~d~~kL~~~n~ 234 (239)
T cd00808 208 LIELFDLERVSKSPAIFDPEKLDWLNG 234 (239)
T ss_pred HHhcCCHhhCCcCcCcCCHHHHHHHHH
Confidence 466788888888999999999987743
No 56
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=99.69 E-value=1.7e-15 Score=175.34 Aligned_cols=132 Identities=19% Similarity=0.218 Sum_probs=98.8
Q ss_pred CceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHH
Q 010832 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (499)
Q Consensus 127 ~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l 206 (499)
+.+..|.-.-|||||.|||||+++.++.|+++|+.|+.||+|.+....+++|.++...++.- .... .+....+
T Consensus 47 ~~~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~Glp~e~~ve~~---l~~~---~~~~~~~- 119 (1052)
T PRK14900 47 RPPFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGIATQMIVEKE---LKKT---EKKSRHD- 119 (1052)
T ss_pred CCCEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCccchHHHHHHHHH---hhhc---cCCChhh-
Confidence 45688889999999999999999999999999999999999999999999999887544221 0000 0000000
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeeccc-----cccCcHHH
Q 010832 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGES-----FYNPYIPG 281 (499)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~~es-----~~~~~v~~ 281 (499)
+ ...+| ++..+++++.+...+.+.+++||+++||..+. .|...+.+
T Consensus 120 ----------~-~~e~f------------------~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~ 170 (1052)
T PRK14900 120 ----------L-GREAF------------------LERVWAWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVRE 170 (1052)
T ss_pred ----------C-CHHHH------------------HHHHHHHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHH
Confidence 0 00112 22334567888899999999999999986542 34567899
Q ss_pred HHHHHHHCCCeEe
Q 010832 282 VIDELSKQGLVEE 294 (499)
Q Consensus 282 ~i~~L~~~g~~y~ 294 (499)
++.+|.++|++|+
T Consensus 171 ~F~~L~~~Gliyr 183 (1052)
T PRK14900 171 VFVRLHEEGLIYR 183 (1052)
T ss_pred HHHHHHHCCCEEe
Confidence 9999999999995
No 57
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=8.1e-16 Score=159.85 Aligned_cols=258 Identities=17% Similarity=0.205 Sum_probs=163.6
Q ss_pred ceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCC------ccccc
Q 010832 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSE------DANET 201 (499)
Q Consensus 128 ~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~------~~~~~ 201 (499)
..++| -++..|.|..|||++|-.+.||+++|.|+.+|++|..++..+|+.. +.+-.++.. .|-+.
T Consensus 19 ~~~~v-~tGisPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~--------lRkvp~~lp~~~~~e~Ylg~ 89 (521)
T COG1384 19 DEYVV-ATGISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDP--------LRKVPRNLPDPEELEQYLGM 89 (521)
T ss_pred CcEEE-ecCcCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcc--------cccCCCCCCChHHHHHHcCC
Confidence 55776 6899999999999999999999999999999999999999999865 222122211 01112
Q ss_pred hHHHHHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeecc-cccc-CcH
Q 010832 202 AIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-SFYN-PYI 279 (499)
Q Consensus 202 ~i~~l~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~~e-s~~~-~~v 279 (499)
|+..+ +||. .|++. +++.+...|.+.+++|||..++.+. ..|. +.-
T Consensus 90 Plt~I------------PdP~-----------------G~~~S---ya~hf~~~f~~~l~~~Gi~~E~~s~se~Yk~G~~ 137 (521)
T COG1384 90 PLTEI------------PDPF-----------------GCCDS---YAEHFLRPFEEFLDEFGIEVEFVSATELYKSGLY 137 (521)
T ss_pred ccccC------------CCCc-----------------cccch---HHHHHHHHHHHHHHhcCCceEEEEhHHhhhcccH
Confidence 22111 2331 12333 4788899999999999999865333 3453 322
Q ss_pred HHHHHHHHHC-C--------CeE-eecCeEEEEec------CC-CCCeEE-EcCCCcccccchhHHH------------H
Q 010832 280 PGVIDELSKQ-G--------LVE-ESQGARVIFIE------GV-NIPLII-VKSDGGFNYASTDLAA------------L 329 (499)
Q Consensus 280 ~~~i~~L~~~-g--------~~y-~~dGa~~~~~~------g~-~~d~vl-~ksDG~~~Y~t~DiA~------------~ 329 (499)
.+.+....++ . +.- +-++. |.... |. ....|+ +..+|+.+|.|.+ ++ .
T Consensus 138 ~~~i~~ale~rdeI~~il~~~~~~~~~e~-~~P~~piC~kcGri~~t~v~~~d~~~~v~Y~Ce~-Gh~g~v~ir~g~~KL 215 (521)
T COG1384 138 DEAIRIALERRDEIMEILNEYRGRELEED-WSPFMPICEKCGRILTTPVIEWDGEGTVEYRCEC-GHEGEVDIRGGEGKL 215 (521)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcCCcccCC-ceeccccccccCCcceeEEEEecCCceEEEEecC-CccceeeccccCccc
Confidence 2222222221 1 110 11222 22221 43 222222 3345677777753 21 1
Q ss_pred HHHHhhcCCCeEE-----EEecCCcc---ccHHHHHHHHH-HcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcc
Q 010832 330 WYRLNEEKAEWII-----YVTDVGQQ---LHFDMVFSAAK-RAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVV 400 (499)
Q Consensus 330 ~~k~~~~~~d~~i-----~V~g~~q~---~hf~~~~~~~~-~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v 400 (499)
-||. .|..-|.+ ---|.||. .-+..-..|++ .+|+.| | .++.|+++.+.+|.|||||+||+|
T Consensus 216 ~WRv-dWp~RW~~lgVd~EPfGKDH~a~ggSydtg~~I~~ei~g~~p---P-----~~~~YE~i~lkg~~~mSsSkG~~i 286 (521)
T COG1384 216 PWRV-DWPMRWAALGVDFEPFGKDHAAAGGSYDTGKRIAREIFGYEP---P-----VPFVYEWILLKGGGKMSSSKGNVI 286 (521)
T ss_pred ccCc-CccchhhccCcccccCCcccccccCchHHHHHHHHHhcCCCC---C-----CCCceEEEEecCCcccccCCCcEE
Confidence 2333 23333322 12344443 34556667775 778853 2 456789998777789999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHH-Hhcc
Q 010832 401 RLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQ-MLND 466 (499)
Q Consensus 401 ~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~-~~~~ 466 (499)
+++|+|+-+ .++.+||++++.+|+++++||++. +++.
T Consensus 287 ~~~dwlev~-----------------------------~pE~lry~~~r~kP~r~~~~d~~~~il~l 324 (521)
T COG1384 287 SLSDWLEVA-----------------------------PPEVLRYLIARTKPNRHIDFDFDLGILKL 324 (521)
T ss_pred cHHHHHHhc-----------------------------CHhHeeeeeeecCCCcceecCCCCChhHH
Confidence 999999985 889999999999999999999987 6554
No 58
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=99.68 E-value=7.7e-15 Score=168.20 Aligned_cols=128 Identities=15% Similarity=0.168 Sum_probs=99.0
Q ss_pred CCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHH
Q 010832 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (499)
Q Consensus 126 ~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~ 205 (499)
.+++++|...-||+||++||||++|.++.|+++|+.+..|++|......+-+|.++...+... .+. .
T Consensus 47 ~~~~f~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~---l~~----~------ 113 (912)
T PRK05743 47 GKPKFILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKK---LGK----K------ 113 (912)
T ss_pred CCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHH---cCC----c------
Confidence 356699999999999999999999999999999999999999999999999999988665321 110 0
Q ss_pred HHHHHHHHhcccCCC-hHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeecc-----ccccCcH
Q 010832 206 LQEFYRRSKNRFDSD-PAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYI 279 (499)
Q Consensus 206 l~~~y~~~~~~~~~~-~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~~e-----s~~~~~v 279 (499)
..+.+ .+|. +..+++++.+.+.+++.+++||+.+||..+ ..|...+
T Consensus 114 ----------~~~~~~~~f~------------------~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v 165 (912)
T PRK05743 114 ----------GKKLSAAEFR------------------KKCREYALEQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANI 165 (912)
T ss_pred ----------cccCCHHHHH------------------HHHHHHHHHHHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHH
Confidence 00011 1222 233456788888999999999999887432 2355678
Q ss_pred HHHHHHHHHCCCeEe
Q 010832 280 PGVIDELSKQGLVEE 294 (499)
Q Consensus 280 ~~~i~~L~~~g~~y~ 294 (499)
.+++.+|.++|++|+
T Consensus 166 ~~~f~~l~~~Gliy~ 180 (912)
T PRK05743 166 IRALGKMAKKGYLYK 180 (912)
T ss_pred HHHHHHHHHCCCEEe
Confidence 999999999999884
No 59
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=99.68 E-value=3.5e-16 Score=151.34 Aligned_cols=209 Identities=15% Similarity=0.066 Sum_probs=144.9
Q ss_pred ecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHHHHHHHHH
Q 010832 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRS 213 (499)
Q Consensus 134 ~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~ 213 (499)
=|.|+|||+|||||+|++++.+.+|| ++++...-.|+|... ...
T Consensus 5 RfaPsPtG~lHiG~~rtal~~~l~Ar-----~~~G~~ilRieDtD~----------------------~r~--------- 48 (240)
T cd09287 5 RFAPNPNGPLHLGHARAAILNGEYAK-----MYGGKFILRFDDTDP----------------------RTK--------- 48 (240)
T ss_pred eCCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeeCcCCC----------------------Ccc---------
Confidence 58899999999999999999999999 677788877888421 000
Q ss_pred hcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeee-eccccccCcHHHHHHHHHHCCCe
Q 010832 214 KNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE-KGESFYNPYIPGVIDELSKQGLV 292 (499)
Q Consensus 214 ~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~-~~es~~~~~v~~~i~~L~~~g~~ 292 (499)
. ....+.+.+.++++.||+..|. ...|.+.+...+++++|.++|.+
T Consensus 49 ----~-----------------------------~~~~~~~~i~~dL~wLGl~~d~~~~qS~r~~~y~~~~~~Li~~G~a 95 (240)
T cd09287 49 ----R-----------------------------PDPEAYDMIPEDLEWLGVKWDEVVIASDRIELYYEYARKLIEMGGA 95 (240)
T ss_pred ----c-----------------------------chHHHHHHHHHHHHHcCCCCCCccchhccHHHHHHHHHHHHHcCCc
Confidence 0 0112224477899999997763 23466666788999999999999
Q ss_pred EeecCeEEEEecCCCCCeEEEcCCCcccccchhHHHHHHHHhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCC
Q 010832 293 EESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDST 372 (499)
Q Consensus 293 y~~dGa~~~~~~g~~~d~vl~ksDG~~~Y~t~DiA~~~~k~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~ 372 (499)
|... -. ..+++++ |+|. +|..++.. ..+.+++| .|.|+....+++..+.+++|+.
T Consensus 96 Y~~~------~~--~~~~~i~-----ptY~---la~vVDD~-~~gIThVi--Rg~d~~~~t~~q~~l~~~Lg~~------ 150 (240)
T cd09287 96 YVHP------RT--GSKYRVW-----PTLN---FAVAVDDH-LLGVTHVL--RGKDHIDNTEKQRYIYEYFGWE------ 150 (240)
T ss_pred ccCc------cc--CCcEEEE-----Eccc---cceeeecc-ccCCCeEE--echhhhhCCHHHHHHHHHcCCC------
Confidence 9610 01 1244542 6665 45556665 46888885 9999988888888889999984
Q ss_pred CCcEEEEEeEEEecCCCCccccccCCc---------------ccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 010832 373 YPKASHVGFGLVLGEDGKRLRTRFSEV---------------VRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEA 437 (499)
Q Consensus 373 ~~~~~Hv~~g~V~~~~g~KMSkR~G~~---------------v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~ 437 (499)
.+.+.|++ +++. +|.|||||++.. .++..+.+.+
T Consensus 151 ~P~~~H~p--ll~~-~~~kLSKR~~~~~i~~~~~~~w~dp~~~~~~~lr~~G---------------------------- 199 (240)
T cd09287 151 YPETIHWG--RLKI-EGGKLSTSKIRKGIESGEYEGWDDPRLPTLRALRRRG---------------------------- 199 (240)
T ss_pred CCcEEeee--eecC-CCCeeccccccccccccccccccCcchHHHHHHHHCC----------------------------
Confidence 46888995 4764 579999999531 2344443332
Q ss_pred hhhhHHHHHhhcCC-CCCCccccHHHHhccc
Q 010832 438 VGYGAAKYFDLKNN-RLTNYTFSFDQMLNDK 467 (499)
Q Consensus 438 vg~~airy~~L~~~-~~~~~~Fd~~~~~~~~ 467 (499)
+.++||+-|+..-- ..++..|+|+.+..++
T Consensus 200 ~~p~ai~~~~~~lG~s~~~~~~~~~~l~~~~ 230 (240)
T cd09287 200 IRPEAIRDFIIEVGVKQTDATISWENLYAIN 230 (240)
T ss_pred CCHHHHHHHHHHhCCCCCCCccCHHHHHHHH
Confidence 34666665554433 4577889999877653
No 60
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=99.66 E-value=2.6e-15 Score=152.36 Aligned_cols=239 Identities=20% Similarity=0.202 Sum_probs=154.5
Q ss_pred cCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHHHHHHHHHh
Q 010832 135 SSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSK 214 (499)
Q Consensus 135 ~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~ 214 (499)
-.|+|||+|||||+|++++-..+|| +..|-=+.|.- |...
T Consensus 6 FAPsPtG~lHiG~~r~al~n~~~Ar--~~~G~~iLRie---DtD~----------------------------------- 45 (314)
T PF00749_consen 6 FAPSPTGYLHIGHARTALLNYLFAR--KYGGKFILRIE---DTDP----------------------------------- 45 (314)
T ss_dssp E---SSSS-BHHHHHHHHHHHHHHH--HTTSEEEEEEE---TSST-----------------------------------
T ss_pred eCCCCCCCcccchhHHHHHHHHHHh--ccCceEEEecc---cccc-----------------------------------
Confidence 4699999999999999999988888 45555555532 3110
Q ss_pred cccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeee--eccccccCcHHHHHHHHHHCCCe
Q 010832 215 NRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE--KGESFYNPYIPGVIDELSKQGLV 292 (499)
Q Consensus 215 ~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~--~~es~~~~~v~~~i~~L~~~g~~ 292 (499)
. +....+.+.+.++|+.||+..|. +..|.+.+.-.+.+++|+++|.+
T Consensus 46 -------~------------------------R~~~~~~~~i~~~L~wlGl~~D~~~~~QS~r~~~Y~~~~~~L~~~g~a 94 (314)
T PF00749_consen 46 -------E------------------------RCRPEFYDAILEDLRWLGLEWDYGPYYQSDRLEIYQEAAEKLIDKGKA 94 (314)
T ss_dssp -------T------------------------TCHHHHHHHHHHHHHHHT---STCEEEGGGGHHHHHHHHHHHHHTTSE
T ss_pred -------c------------------------cchhhHHHHHHhheeEEEEecCCeEEeHHHHHHHHHHHHHHHhhcCCC
Confidence 0 00122335566678888887752 22355545566777888888877
Q ss_pred Ee----------------e---------------------------cCeEEEEec--------------C-------CCC
Q 010832 293 EE----------------S---------------------------QGARVIFIE--------------G-------VNI 308 (499)
Q Consensus 293 y~----------------~---------------------------dGa~~~~~~--------------g-------~~~ 308 (499)
|. . .+..++++. | ...
T Consensus 95 Y~C~Csr~~l~~~r~~~~~~~~~~~~~y~~~c~~~~~~~~~~~~~~~~~~~iRlk~~~~~~~~~~D~v~g~i~~~~~~~~ 174 (314)
T PF00749_consen 95 YPCFCSREELKAAREAQEGAGCPHRPRYPGTCRELTEEEMRAGLAKGGPAVIRLKVPMESPIAFRDLVRGRIIFDPSDLG 174 (314)
T ss_dssp EEEESEHHHHHHHHHHHHHTTSTTTTSBHHHHHCHHHHHHHHHHHTTTSEEEEE-SSSTCCEEEEETTTEEEEEEGGGSB
T ss_pred ccccCCHHHHHHHHHHhhccCCCccccchhhhhhhhHHHHHhhhccCCceeeeeecccccccccccCcceeeeeccccCC
Confidence 74 0 112233322 0 125
Q ss_pred CeEEEcCCCcccccchhHHHHHHHHhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCC
Q 010832 309 PLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGED 388 (499)
Q Consensus 309 d~vl~ksDG~~~Y~t~DiA~~~~k~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~ 388 (499)
|+|+.|+||.|||. +|..++.. ..+.+++| .|.|+-..-+++..+.++||+. .+.+.|++ ++.+.+
T Consensus 175 D~vi~r~dg~ptY~---fA~vVDD~-~~gITHVi--RG~D~l~~t~~Q~~L~~~Lg~~------~P~~~H~p--l~l~~~ 240 (314)
T PF00749_consen 175 DFVIRRSDGYPTYH---FAVVVDDH-LMGITHVI--RGEDLLSSTPRQILLYEALGWP------PPPYAHLP--LILNED 240 (314)
T ss_dssp TEEEESTTSEB-HH---HHHHHHHH-HTT-SEEE--EEGGGTTCHHHHHHHHHHCTSS------S-EEEEEE--EEEETT
T ss_pred chhccccccCcccc---cceeeccc-ccccCeEE--EccccccccHHHHHHHHHhCCC------CcceEeee--eeecCC
Confidence 89999999999997 57778877 46889986 9999988888887889999995 37899995 466689
Q ss_pred CCccccccCCcc-cHHHHHHHHHHH--HHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHh
Q 010832 389 GKRLRTRFSEVV-RLVDLLDEAKNR--SKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQML 464 (499)
Q Consensus 389 g~KMSkR~G~~v-~l~dll~e~~~~--a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~ 464 (499)
|+|||||.|... .+.++.+....+ ..+.+..+ +|+++...++.. -.+.++.|+++....++..||.+++.
T Consensus 241 g~kLSKR~~~~~i~~~~~r~~g~~~~~~l~~L~~l----G~~~~~~~e~~~--~~~~~~~f~~~~~~~~~~~fd~~kL~ 313 (314)
T PF00749_consen 241 GKKLSKRKGAKSIELGDYREWGDPPEATLNYLARL----GWSPEAIREFFS--LDELIKQFDLSKISKSPAVFDRKKLD 313 (314)
T ss_dssp SSBSSTTCSHHBHHHHHHHHTT-THHHHHHHHHHT----TB-HCTHHCHHH--HHHHHHHC-GGGBHSSHEEHHHHHHH
T ss_pred CcEechhhccccccccccccCCCCHHHHHHHHHHh----cCCcchhhhhcC--HHHHHHHhhHhhccCchHHhCHHHhC
Confidence 999999999664 266776665533 45555544 455444444332 24567888899999999999998874
No 61
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=99.66 E-value=1.2e-15 Score=168.12 Aligned_cols=133 Identities=21% Similarity=0.275 Sum_probs=93.3
Q ss_pred CCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHH
Q 010832 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (499)
Q Consensus 126 ~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~ 205 (499)
++++..|...-||+||+|||||++|.++.|+++|+.+..||+|.+....+-+|.++...++. .++... ..
T Consensus 21 ~~~~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~vek---~l~~~~---~~---- 90 (601)
T PF00133_consen 21 NKPKFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKVEK---KLGIKE---KK---- 90 (601)
T ss_dssp TSGEEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHHHH---HTTTTS---HH----
T ss_pred CCCcEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhHHH---hhcccc---cc----
Confidence 46789999999999999999999999999999999999999999999999999999866532 111100 00
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeecc-----ccccCcHH
Q 010832 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIP 280 (499)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~~e-----s~~~~~v~ 280 (499)
....+ ..++| ++..+++++.+.+.+++.+++||+.+||..+ ..|...+.
T Consensus 91 -------~~~~~-~~~~~------------------~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~ 144 (601)
T PF00133_consen 91 -------DRKDL-GREEF------------------REECREWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVW 144 (601)
T ss_dssp -------HCSCS-THHHH------------------HHHHHHHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHH
T ss_pred -------ccccc-ccccc------------------hhhhcchhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHH
Confidence 00001 01122 2333456888889999999999999988533 23456789
Q ss_pred HHHHHHHHCCCeEe
Q 010832 281 GVIDELSKQGLVEE 294 (499)
Q Consensus 281 ~~i~~L~~~g~~y~ 294 (499)
+++.+|.++|++|+
T Consensus 145 ~~F~~l~~kglIyr 158 (601)
T PF00133_consen 145 WQFKKLYEKGLIYR 158 (601)
T ss_dssp HHHHHHHHTTSEEE
T ss_pred HHHHHHHhcCcEEe
Confidence 99999999999985
No 62
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=99.65 E-value=1.1e-15 Score=147.32 Aligned_cols=167 Identities=18% Similarity=0.126 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHcCCeeee--eccccccCcHHHHHHHHHHCCCeEeecCeEEEEecCCCCCeEEEcCCCcccccchhHHHH
Q 010832 252 SRKEFDKVYKRLRVDLEE--KGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAAL 329 (499)
Q Consensus 252 ~~~~~~~~~~~LgI~fd~--~~es~~~~~v~~~i~~L~~~g~~y~~dGa~~~~~~g~~~d~vl~ksDG~~~Y~t~DiA~~ 329 (499)
+.+.+.++++.||+..|. +..|.+.+.-.+.+++|.++| |.|+|. +|..
T Consensus 52 ~~~~I~~dL~wlGl~wd~~~~~QS~r~~~y~~~~~~L~~~g--------------------------g~p~Y~---la~v 102 (230)
T cd00418 52 YVESILEDLKWLGLDWDEGPYRQSDRFDLYRAYAEELIKKG--------------------------GYPLYN---FVHP 102 (230)
T ss_pred HHHHHHHHHHHcCCCCCCCeeehhcCHHHHHHHHHHHHHcC--------------------------CCcccc---cccc
Confidence 345777899999999863 334555566778899999988 778886 4556
Q ss_pred HHHHhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccHHHHHHHH
Q 010832 330 WYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEA 409 (499)
Q Consensus 330 ~~k~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~dll~e~ 409 (499)
++.. ..+.+++| .|.||-..-+++..+++++|+. .+.+.|+ .++.+.+|+|||||.|+ .+++++.+++
T Consensus 103 vDD~-~~gIThVi--RG~D~l~st~~q~~l~~~Lg~~------~P~~~H~--pll~~~~g~KLSKr~~~-~~i~~~r~~G 170 (230)
T cd00418 103 VDDA-LMGITHVL--RGEDHLDNTPIQDWLYEALGWE------PPRFYHF--PRLLLEDGTKLSKRKLN-TTLRALRRRG 170 (230)
T ss_pred cccc-ccCCCEEE--ECHhhhhchHHHHHHHHHcCCC------CCeEEEe--eeeeCCCCCCccCcCCC-cCHHHHHHCC
Confidence 6766 46888886 9999988888888899999994 4688998 46888889999999996 6898877654
Q ss_pred HHH--HHHHHHHhcCCCCCCH---HHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcccC
Q 010832 410 KNR--SKAVLIERGKDKEWTE---EELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKG 468 (499)
Q Consensus 410 ~~~--a~~~~~~~~~~~~~~~---~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~ 468 (499)
... ..+.+.. .++++ .++..+. +++..|.+..-..++..||++++..++.
T Consensus 171 ~~p~ai~~~l~~----lG~~~~~~~~~~~~~-----~li~~f~~~~~~~~~~~~d~~kL~~~N~ 225 (230)
T cd00418 171 YLPEALRNYLAL----IGWSKPDGHELFTLE-----EMIAAFSVERVNSADATFDWAKLEWLNR 225 (230)
T ss_pred CcHHHHHHHHHH----cCCCCCCCccccCHH-----HHHHhcCHhhCCCCCcccCHHHHHHHHH
Confidence 322 2333321 12221 1222222 2577788888888999999999988753
No 63
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=1.8e-15 Score=152.06 Aligned_cols=267 Identities=17% Similarity=0.214 Sum_probs=167.7
Q ss_pred CCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHH
Q 010832 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (499)
Q Consensus 126 ~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~ 205 (499)
.+++..+.-.==.|+.++|+||+.++++.|+|||.-+..|-.|++....+.+|..|...++. +|
T Consensus 37 ~~~~~~lTTPifYvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaat-----------nG----- 100 (578)
T KOG0436|consen 37 EGETFVLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAAT-----------NG----- 100 (578)
T ss_pred CCceeEEecceeecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhh-----------cC-----
Confidence 34555544433478889999999999999999999999999999999888888766544322 01
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeee-e--eccccccCcHHHH
Q 010832 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-E--KGESFYNPYIPGV 282 (499)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd-~--~~es~~~~~v~~~ 282 (499)
-+| .++|++.-+.|.+.+..+||.++ + ..+..|...++++
T Consensus 101 -------------~~P------------------------~e~cDr~s~~f~qL~k~~gi~yt~FIRTTdpkH~a~Vqef 143 (578)
T KOG0436|consen 101 -------------RNP------------------------PELCDRISQSFRQLWKDAGIAYTKFIRTTDPKHEAIVQEF 143 (578)
T ss_pred -------------CCh------------------------HHHHhhhhHHHHHHHHHhCcchhheeecCCchHHHHHHHH
Confidence 111 23566667788888899999984 2 3456677789999
Q ss_pred HHHHHHCCCeEee--cCeEEEEec---------------C-----CCCCeEEEcCCCcc-------------------cc
Q 010832 283 IDELSKQGLVEES--QGARVIFIE---------------G-----VNIPLIIVKSDGGF-------------------NY 321 (499)
Q Consensus 283 i~~L~~~g~~y~~--dGa~~~~~~---------------g-----~~~d~vl~ksDG~~-------------------~Y 321 (499)
.+.+..+|++|.. +|..|+..+ | ..+.-|++++.-.+ -+
T Consensus 144 w~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~p~~~gk~vsmEsg~~vv~~kE~NY~FrLSkfqk~l~d~lrkNP~f 223 (578)
T KOG0436|consen 144 WARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKNPCPPGKVVSMESGNPVVWRKEDNYFFRLSKFQKPLEDHLRKNPRF 223 (578)
T ss_pred HHHHHhCCceeeecccceEeccccccCCHHHHhcCCCCCCceeeeccCCceeEecccceeeeHHhhhhHHHHHHhcCCCc
Confidence 9999999999975 576666432 1 00112334332111 11
Q ss_pred cch----------------hHH-------------------------------H------HHHHHh-----hcCCCeEEE
Q 010832 322 AST----------------DLA-------------------------------A------LWYRLN-----EEKAEWIIY 343 (499)
Q Consensus 322 ~t~----------------DiA-------------------------------~------~~~k~~-----~~~~d~~i~ 343 (499)
+.+ |+. | -..+.+ ..+--..+.
T Consensus 224 vqPs~~~~qVl~~lktglpDlSISRpsarl~WGIPvP~ddsQtIYVWfDAL~nYiSvig~~~~~~N~k~~ls~~wPat~H 303 (578)
T KOG0436|consen 224 VQPSYFHNQVLSWLKTGLPDLSISRPSARLDWGIPVPGDDSQTIYVWFDALLNYISVIGYPNKQQNLKTALSFGWPATLH 303 (578)
T ss_pred cCchHHHHHHHHHHHcCCCcccccChhhhcccCCCCCCCCcceEEEeHHHHhhHHHhhcCCchhccccceeecCCCceee
Confidence 110 000 0 000000 000112345
Q ss_pred EecCCccccHHH--HHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccHHHHHHHHHHHHHHHHHHhc
Q 010832 344 VTDVGQQLHFDM--VFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERG 421 (499)
Q Consensus 344 V~g~~q~~hf~~--~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~dll~e~~~~a~~~~~~~~ 421 (499)
|+|.|- .-|.. +-+.+.++|... ...-+.| |.-+ .+|.|||||.||+|..-++++.
T Consensus 304 vIGKDI-lrFHavYWPafLmaAGlpl----P~~I~vH---ghwt-~ngmKMsKSLGNvvdP~~l~~k------------- 361 (578)
T KOG0436|consen 304 VIGKDI-LRFHAVYWPAFLMAAGLPL----PKMIFVH---GHWT-KNGMKMSKSLGNVVDPFELVQK------------- 361 (578)
T ss_pred ehhhhh-hhhhhhhhHHHHHhcCCCC----ccEEEEe---eeee-ecceecchhhccccCHHHHHHH-------------
Confidence 566552 12222 224456778742 1234444 4455 6799999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHhhhhHHHHHhhcCCC-CCCccccHHHHhcccC-CchhHHHHHHHHHHH
Q 010832 422 KDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-LTNYTFSFDQMLNDKG-NTAVYLLYAHARICS 483 (499)
Q Consensus 422 ~~~~~~~~~~~~~a~~vg~~airy~~L~~~~-~~~~~Fd~~~~~~~~~-n~~~YlqYa~aR~~s 483 (499)
+|++++|||+|++.. ..+-+|+.+++....+ .-.--+---..|+++
T Consensus 362 ----------------ygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~~lG~LlnRc~g 409 (578)
T KOG0436|consen 362 ----------------YGVDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLANTLGNLLNRCLG 409 (578)
T ss_pred ----------------hCccceeeEeeeccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 699999999999874 7899999999876532 111122233457776
No 64
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=99.65 E-value=9e-15 Score=167.58 Aligned_cols=133 Identities=18% Similarity=0.198 Sum_probs=99.4
Q ss_pred CCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHH
Q 010832 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (499)
Q Consensus 126 ~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~ 205 (499)
.+++..|...-|||+|+|||||++|.++.|+++|+.|+.||+|.+....+.+|.++...+... ++-. +...+..
T Consensus 34 ~~~~f~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~---l~~~---~~~~~~~ 107 (861)
T TIGR00392 34 GKPEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTHGLPIEHKVEKK---LGIS---GKKEISS 107 (861)
T ss_pred CCCCeEEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCCcCCCccHHHHHHHHH---hCcc---cccccch
Confidence 345688889999999999999999999999999999999999999999999999998665321 1100 0000000
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeecc-----ccccCcHH
Q 010832 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIP 280 (499)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~~e-----s~~~~~v~ 280 (499)
+ ...+|. +..++++..+.+.+++.+++||+.+||..+ ..|...+.
T Consensus 108 ~------------~~~~f~------------------~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~~~ 157 (861)
T TIGR00392 108 L------------EIEEFR------------------EKCREFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQW 157 (861)
T ss_pred h------------hHHHHH------------------HHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHH
Confidence 0 001122 333456777888999999999999988533 24556789
Q ss_pred HHHHHHHHCCCeEe
Q 010832 281 GVIDELSKQGLVEE 294 (499)
Q Consensus 281 ~~i~~L~~~g~~y~ 294 (499)
.++.+|.++|++|+
T Consensus 158 ~~f~~l~~~gliyr 171 (861)
T TIGR00392 158 WLFKEAHEKGLLYR 171 (861)
T ss_pred HHHHHHHHCCCEee
Confidence 99999999999984
No 65
>PLN02843 isoleucyl-tRNA synthetase
Probab=99.61 E-value=9.3e-14 Score=159.91 Aligned_cols=130 Identities=12% Similarity=0.141 Sum_probs=97.7
Q ss_pred CCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHH
Q 010832 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (499)
Q Consensus 126 ~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~ 205 (499)
.+++.+|...-||+||.|||||++|.++.|+++|+.+..||+|.+....+.+|.++..-+.. +.+.
T Consensus 30 ~~~~f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGlpie~~vek---~l~~----------- 95 (974)
T PLN02843 30 NGESFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVLQ---SLDQ----------- 95 (974)
T ss_pred CCCCEEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCcHHHHHHHH---Hhch-----------
Confidence 35679999999999999999999999999999999999999999999999999998754311 1110
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeecc-----ccccCcHH
Q 010832 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIP 280 (499)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~~e-----s~~~~~v~ 280 (499)
+....+ ...+|. +..+++++.+...+++.+++||+..||..+ ..|...+.
T Consensus 96 ------~~~~~~-~~~~f~------------------~~c~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~ 150 (974)
T PLN02843 96 ------EARKEL-TPIKLR------------------AKAAKFAKKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQI 150 (974)
T ss_pred ------hhhccC-CHHHHH------------------HHHHHHHHHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHH
Confidence 000001 011222 333456777778889999999998887432 23456789
Q ss_pred HHHHHHHHCCCeEe
Q 010832 281 GVIDELSKQGLVEE 294 (499)
Q Consensus 281 ~~i~~L~~~g~~y~ 294 (499)
+++.+|.++|++|+
T Consensus 151 ~~f~~l~~~GlIyr 164 (974)
T PLN02843 151 EVFGQMFLNGYIYR 164 (974)
T ss_pred HHHHHHHHCCCEEe
Confidence 99999999999884
No 66
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=1.8e-14 Score=152.10 Aligned_cols=138 Identities=20% Similarity=0.201 Sum_probs=103.2
Q ss_pred EEEcCCCcccccchhHHHHHHHHhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCC
Q 010832 311 IIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK 390 (499)
Q Consensus 311 vl~ksDG~~~Y~t~DiA~~~~k~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~ 390 (499)
|+.|+||.|||.- |..++.. ..+.+++| .|.||-..-+++..+.+++|+. .+.+.|+ ++|++.+|+
T Consensus 184 v~~r~dg~ptY~f---avvvDD~-~mgITHvi--RG~d~~~nt~~q~~l~~~lg~~------~P~~~H~--~li~~~~g~ 249 (472)
T COG0008 184 VILRYDGYPTYNF---AVVVDDH-LMGITHVL--RGEDHLDNTPRQIWLYEALGWP------PPVYAHL--PLLLNEDGK 249 (472)
T ss_pred eeecCCCCcccce---eeeechh-hcCCceEE--echhhccCCHHHHHHHHHcCCC------CCcEEEe--eeeecCCCC
Confidence 9999999999973 4555655 46888986 9999999999998999999995 4789998 678888899
Q ss_pred ccccccCCcccHHHHHHHHH--HHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcccC
Q 010832 391 RLRTRFSEVVRLVDLLDEAK--NRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKG 468 (499)
Q Consensus 391 KMSkR~G~~v~l~dll~e~~--~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~ 468 (499)
|||||+| .+.+.++...+. .++.+.+.-++. .+.++..+..... ..+.+|+++....++..||.+++...++
T Consensus 250 kLSKr~~-~~~~~~~~~~G~~~~al~~~~allg~--~~~~~~~e~f~~~---~~~~~fd~~~~~~~~~~fd~~kL~~~n~ 323 (472)
T COG0008 250 KLSKRKG-AVSIGEYRVEGWLPPALPNLLALLGR--GYPPEAIEIFSLE---EGIKWFDLTIVSKSPAAFDRKKLDWLNP 323 (472)
T ss_pred eecCccC-ccccchhhhcCCCcHHHHHHHHHhcC--CCChhhHHHHHHH---HHHhhhhhhhhhcccccccHHHhHhhhH
Confidence 9999999 778886665544 223343333321 2233444444333 4578999999999999999999988754
No 67
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=99.56 E-value=2.5e-14 Score=141.47 Aligned_cols=184 Identities=17% Similarity=0.192 Sum_probs=129.7
Q ss_pred CCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHHHHHHHHHhc
Q 010832 136 SPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKN 215 (499)
Q Consensus 136 SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~ 215 (499)
.|+|||+|||||+|++++-..+|| +.-|-=+.| |.|...
T Consensus 6 APSPtG~lHiG~~rtAL~n~l~Ar--~~gG~~iLR---iEDtD~------------------------------------ 44 (272)
T TIGR03838 6 APSPSGPLHFGSLVAALGSYLDAR--AHGGRWLVR---IEDLDP------------------------------------ 44 (272)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEE---eCcCCC------------------------------------
Confidence 599999999999999999988888 344544444 233110
Q ss_pred ccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeee--eccccccCcHHHHHHHHHHCCCeE
Q 010832 216 RFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE--KGESFYNPYIPGVIDELSKQGLVE 293 (499)
Q Consensus 216 ~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~--~~es~~~~~v~~~i~~L~~~g~~y 293 (499)
+ +....+.+.+.++|+.||+..|. ...|.+.+.-.+++++|.++|.+|
T Consensus 45 ------~------------------------R~~~~~~~~I~~dL~wLGl~wDe~~~~QS~r~~~Y~~~~~~L~~~G~aY 94 (272)
T TIGR03838 45 ------P------------------------REVPGAADDILRTLEAYGLHWDGEVVYQSQRHALYQAALDRLLAAGLAY 94 (272)
T ss_pred ------C------------------------CCChHHHHHHHHHHHHcCCCCCCCeeeeeCCHHHHHHHHHHHHHcCCEE
Confidence 0 00122335677788999998863 234555566678889999999888
Q ss_pred e-------------e-----cC--------------eEEEEec-----------C--------CCCCeEEEcCCCccccc
Q 010832 294 E-------------S-----QG--------------ARVIFIE-----------G--------VNIPLIIVKSDGGFNYA 322 (499)
Q Consensus 294 ~-------------~-----dG--------------a~~~~~~-----------g--------~~~d~vl~ksDG~~~Y~ 322 (499)
. . +| ++-|++. | ...|+||.|+||.|||.
T Consensus 95 ~C~Ct~eel~~~~~~~~~~y~~~cr~~~~~~~~~~~~~Rlk~~~~~~~~~D~~~g~~~~~~~~~~~D~vi~R~Dg~ptY~ 174 (272)
T TIGR03838 95 PCQCTRKEIAAAAGDGGGIYPGTCRNGLLGRPARPAAWRLRVPDGVIAFDDRLQGPQQQDLAAAVGDFVLRRADGLFAYQ 174 (272)
T ss_pred ecCCCHHHHHHHhcCCCCCCCchhhcccccccCCCceEEEecCCCCceEEEeeeeEEEecCcccCCCEEEEecCCCcccc
Confidence 2 0 11 1112221 1 12578999999999997
Q ss_pred chhHHHHHHHHhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccH
Q 010832 323 STDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRL 402 (499)
Q Consensus 323 t~DiA~~~~k~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l 402 (499)
+|..++.. ..+.+++| .|.||....+++..+.++||+. .+.+.|+ .+|.+.+|+|||||+|.. ++
T Consensus 175 ---fA~vVDD~-~~gIThVi--RG~D~l~~t~~q~~l~~aLg~~------~P~y~H~--pll~~~~g~kLSKR~~~~-~i 239 (272)
T TIGR03838 175 ---LAVVVDDA-AQGITHVV--RGADLLDSTPRQIYLQRLLGLP------PPRYLHL--PLVVNADGEKLSKQNGAP-AL 239 (272)
T ss_pred ---Chhhhhcc-cCCCCEEE--eCHhhhhccHHHHHHHHHhCCC------CCeEEec--hhhhCCCCCeeeccCCcc-ch
Confidence 46667776 46888886 9999988888888899999995 3689998 458779999999999954 55
Q ss_pred HHH
Q 010832 403 VDL 405 (499)
Q Consensus 403 ~dl 405 (499)
+++
T Consensus 240 ~~~ 242 (272)
T TIGR03838 240 DLS 242 (272)
T ss_pred hcC
Confidence 543
No 68
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=99.52 E-value=1.4e-13 Score=137.68 Aligned_cols=137 Identities=20% Similarity=0.204 Sum_probs=98.4
Q ss_pred HHHHHHHHHHcCCeeee--eccccccCcHHHHHHHHHHCCCeEe-----------e----------cC------------
Q 010832 253 RKEFDKVYKRLRVDLEE--KGESFYNPYIPGVIDELSKQGLVEE-----------S----------QG------------ 297 (499)
Q Consensus 253 ~~~~~~~~~~LgI~fd~--~~es~~~~~v~~~i~~L~~~g~~y~-----------~----------dG------------ 297 (499)
.+.+.++|+.||+..|. +..|.+.+.-.+++++|.++|.+|. . +|
T Consensus 57 ~~~I~~dL~wlGl~wDe~~~~QS~r~~~Y~~~~~~L~~~G~aY~C~Ctr~el~~~~~~~~~~~~~y~g~cr~~~~~~~~~ 136 (299)
T PRK05710 57 ADAILADLEWLGLHWDGPVLYQSQRHDAYRAALDRLRAQGLVYPCFCSRKEIAAAAPAPPDGGGIYPGTCRDLLHGPRNP 136 (299)
T ss_pred HHHHHHHHHHCCCCCCCCceEeeccHHHHHHHHHHHHHCCCceecCCCHHHHHHHhhhccCCCCcCCCccccCCccccCC
Confidence 35667788899988762 2245455566788888888888883 0 11
Q ss_pred -eEEEEec-----------C--------CCCCeEEEcCCCcccccchhHHHHHHHHhhcCCCeEEEEecCCccccHHHHH
Q 010832 298 -ARVIFIE-----------G--------VNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVF 357 (499)
Q Consensus 298 -a~~~~~~-----------g--------~~~d~vl~ksDG~~~Y~t~DiA~~~~k~~~~~~d~~i~V~g~~q~~hf~~~~ 357 (499)
++-|+++ | .-.|+||+|+||.|+|. +|..++.. ..+.+++| .|.|+-..-+++.
T Consensus 137 ~~iRlk~~~~~~~~~D~~~G~~~~~~~~~~~D~Vi~R~dg~ptY~---lA~vVDD~-~~gIThVv--RG~D~l~~t~~Q~ 210 (299)
T PRK05710 137 PAWRLRVPDAVIAFDDRLQGRQHQDLALAVGDFVLRRADGLFAYQ---LAVVVDDA-LQGVTHVV--RGADLLDSTPRQI 210 (299)
T ss_pred ceEEEEcCCCceEEEEecceeEeeCCCCCCCCEEEEecCCCcccc---chhHHhcc-cCCCCEEE--eChhhhhcCHHHH
Confidence 1112221 1 12589999999999998 46667776 46888885 9999987777777
Q ss_pred HHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccHHH
Q 010832 358 SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 404 (499)
Q Consensus 358 ~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~d 404 (499)
.+.++||+. .+.+.|++ +|.+.+|+|||||.|.. ++++
T Consensus 211 ~l~~aLg~~------~P~y~H~p--ll~~~~g~kLSKr~~~~-~i~~ 248 (299)
T PRK05710 211 YLQQLLGLP------TPRYLHLP--LVLNADGQKLSKQNGAP-ALDA 248 (299)
T ss_pred HHHHHcCCC------CCeEEEee--cccCCCCCcccccCCcc-chhh
Confidence 889999995 47899994 58778999999999954 5554
No 69
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=99.48 E-value=4.2e-13 Score=142.67 Aligned_cols=228 Identities=16% Similarity=0.140 Sum_probs=143.3
Q ss_pred ceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHHH
Q 010832 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (499)
Q Consensus 128 ~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (499)
.+|+. =-.|+|||+|||||+|++++-..+||- +.|-=+.| +.|... +
T Consensus 10 g~v~t-RFAPsPtG~LHiGharaAlln~l~Ar~--~gG~~iLR---iEDTDp--------------~------------- 56 (523)
T PLN03233 10 GQIVT-RFPPEPSGYLHIGHAKAALLNDYYARR--YKGRLILR---FDDTNP--------------S------------- 56 (523)
T ss_pred CeEEE-eeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEE---ECCCCC--------------C-------------
Confidence 34554 556999999999999999999999984 34544444 333211 0
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeee-eccccccCcHHHHHHHH
Q 010832 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE-KGESFYNPYIPGVIDEL 286 (499)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~-~~es~~~~~v~~~i~~L 286 (499)
+....+.+.+.++++.||+..|. ...|.|.+...+..++|
T Consensus 57 ---------------------------------------R~~~e~~~~I~~dL~WLGl~wD~~~~qSdr~~~y~~~a~~L 97 (523)
T PLN03233 57 ---------------------------------------KEKAEFEESIIEDLGKIEIKPDSVSFTSDYFEPIRCYAIIL 97 (523)
T ss_pred ---------------------------------------ccchHHHHHHHHHHHHhCCCCCCCccccccHHHHHHHHHHH
Confidence 00112234455566666666542 22344444455666666
Q ss_pred HHCCCeEe----------------------------------------ecCeEEEEecCC-------CCCeEEEcCCCcc
Q 010832 287 SKQGLVEE----------------------------------------SQGARVIFIEGV-------NIPLIIVKSDGGF 319 (499)
Q Consensus 287 ~~~g~~y~----------------------------------------~dGa~~~~~~g~-------~~d~vl~ksDG~~ 319 (499)
+++|.+|. .+|..++++..+ -.|.|+.|+||++
T Consensus 98 i~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~~~~m~~G~~~~~~~~lR~K~d~~~~n~~~~D~Vi~R~d~~~ 177 (523)
T PLN03233 98 IEEGLAYMDDTPQEEMKKERADRAESKHRNQSPEEALEMFKEMCSGKEEGGAWCLRAKIDMQSDNGTLRDPVLFRQNTTP 177 (523)
T ss_pred HHcCCeEecCCCHHHHHHHHhhhccCccccCCHHHHHHHHHHHhcccccCCCeEEEEeCcccCCCCCCcCCEEEEEcCCc
Confidence 66666652 124455555421 1478999999863
Q ss_pred ---------cccchhHHHHHHHHhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCC
Q 010832 320 ---------NYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK 390 (499)
Q Consensus 320 ---------~Y~t~DiA~~~~k~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~ 390 (499)
.|.|=|+|..++.. ..+.+++| .|.||..+-++...+.++||+. .+.+ |. |+.+. ..|.
T Consensus 178 h~~~Gd~~~~~PtY~fA~~VDD~-l~gITHvi--Rg~E~~~~t~~q~~l~~aLg~~------~P~~-~~-f~rln-~~~~ 245 (523)
T PLN03233 178 HHRSGTAYKAYPTYDLACPIVDS-IEGVTHAL--RTTEYDDRDAQFFWIQKALGLR------RPRI-HA-FARMN-FMNT 245 (523)
T ss_pred ccccCCcccceeccCCceeeecc-ccCCCeEE--echhhhcCCHHHHHHHHHhCCC------CCee-ee-eEEEC-CCCC
Confidence 23333456656665 46888886 9999999888888899999984 3555 44 67665 6788
Q ss_pred cccccc-------CCcc--------cHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCC-CCC
Q 010832 391 RLRTRF-------SEVV--------RLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNN-RLT 454 (499)
Q Consensus 391 KMSkR~-------G~~v--------~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~-~~~ 454 (499)
|||||+ |.+- |+..|.+.+ +-++|||=|++..- ..+
T Consensus 246 kLSKR~l~~lV~~g~v~GWDDPRlpTi~~lrrrG----------------------------~~peAi~~f~~~~G~s~~ 297 (523)
T PLN03233 246 VLSKRKLTWFVDNGHVTGWDDARFPTIRGISRRG----------------------------IDIDALKMFMCSQGASRR 297 (523)
T ss_pred cccccCchhhhccCcccCccCCchHhHHHHHHCC----------------------------CCHHHHHHHHHHhCCCCC
Confidence 999997 3221 344444432 56788888777654 356
Q ss_pred CccccHHHHhccc
Q 010832 455 NYTFSFDQMLNDK 467 (499)
Q Consensus 455 ~~~Fd~~~~~~~~ 467 (499)
+..++|+.+.+++
T Consensus 298 ~~~i~~~~l~~~n 310 (523)
T PLN03233 298 VVNLDWAKFWAEN 310 (523)
T ss_pred CceecHHHHHHHH
Confidence 7788888876653
No 70
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=99.43 E-value=1.1e-12 Score=141.07 Aligned_cols=241 Identities=15% Similarity=0.069 Sum_probs=149.9
Q ss_pred ceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHHH
Q 010832 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (499)
Q Consensus 128 ~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (499)
.+|+. =..|+|||+|||||+|++++-+.+|| .|+....--++|... . .
T Consensus 92 ~~vvt-RFaPsPtG~LHiGharaalln~~~Ar-----~~~G~~iLRidDTDp--------------~---------R--- 139 (560)
T TIGR00463 92 GEVVM-RFAPNPSGPLHIGHARAAILNQYFAK-----KYKGKLIIRFDDTDP--------------R---------R--- 139 (560)
T ss_pred CeeEE-EeCCCCCCCccHHHHHHHHHHHHHHH-----hcCCEEEEEeCcCCc--------------c---------c---
Confidence 34555 55699999999999999999999996 234444444555311 0 0
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeee-eccccccCcHHHHHHHH
Q 010832 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE-KGESFYNPYIPGVIDEL 286 (499)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~-~~es~~~~~v~~~i~~L 286 (499)
. ...+.+.+.++++.||+..|. ...|.|.+...+++++|
T Consensus 140 -----------~-----------------------------~~e~~~~I~edL~wLGi~~d~~~~qSd~~~~y~~~a~~L 179 (560)
T TIGR00463 140 -----------V-----------------------------KPEAYDMILEDLDWLGVKGDEVVYQSDRIEEYYDYCRKL 179 (560)
T ss_pred -----------c-----------------------------cHHHHHHHHHHHHHcCCCCCccccccccHHHHHHHHHHH
Confidence 0 112335667788888888752 33466667778888888
Q ss_pred HHCCCeEee----------------------------------------cCeEEEEecCC-------CCCeEEEcCCCcc
Q 010832 287 SKQGLVEES----------------------------------------QGARVIFIEGV-------NIPLIIVKSDGGF 319 (499)
Q Consensus 287 ~~~g~~y~~----------------------------------------dGa~~~~~~g~-------~~d~vl~ksDG~~ 319 (499)
+++|.+|.. +|..++++..+ -.|.|+.|.++++
T Consensus 180 i~~G~AY~C~cs~eei~~~r~~g~~~~cR~~s~eenl~~fe~m~~g~~~~~~~~lR~K~d~~~~n~~~rD~V~~R~~~~~ 259 (560)
T TIGR00463 180 IEMGKAYVCDCPPEEFRELRNDGVACACRDRSVEENLEIWEEMLNGTEEGGKVVVRAKTDYKHKNPAIRDWVIFRINKTP 259 (560)
T ss_pred HHcCCceeecCCHHHHHHHHhCCCCCCccCCCHHHHHHHHHHHhcccccCCCeEEEEECCCcCCCccccCcEEEEecCCC
Confidence 888888841 12234444311 1367888887653
Q ss_pred c---------ccchhHHHHHHHHhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCC
Q 010832 320 N---------YASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK 390 (499)
Q Consensus 320 ~---------Y~t~DiA~~~~k~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~ 390 (499)
- |.|=|+|..++.. ..+.+++| .|.|+...-+++..+..++|+. .+.+.|.+ ++.+.+|.
T Consensus 260 h~~~Gd~~~~~PtYdfA~~VDD~-l~gITHvi--Rg~E~~~nT~rq~yl~~~lg~~------~P~~~h~~--~l~~~~~~ 328 (560)
T TIGR00463 260 HPRTGDKYKVYPTMDFSVPIDDH-LLGVTHVL--RGKDHIDNERKQQYIYMYFGWE------LPEFIHWG--RLKINDVR 328 (560)
T ss_pred ccccCCEEEEEeccccceEeecc-cCCCCeEE--echhhhcCCHHHHHHHHHcCCC------CCeEEEEc--ceecCCCc
Confidence 2 4455566666665 46888886 8998877666666777889984 46889985 57777788
Q ss_pred ccccccCCcccHHHHH---HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCC-CCCCccccHHHHhcc
Q 010832 391 RLRTRFSEVVRLVDLL---DEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNN-RLTNYTFSFDQMLND 466 (499)
Q Consensus 391 KMSkR~G~~v~l~dll---~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~-~~~~~~Fd~~~~~~~ 466 (499)
|+|||..--...+-.+ +.-......-+..+ .+.++|||-|++..- ..++..++|+.+.++
T Consensus 329 kLskk~k~~~l~~g~~~gWdDPr~~ti~~lrrr----------------G~~peAi~~f~~~~G~s~~~~~i~~~~l~~~ 392 (560)
T TIGR00463 329 TLSTSSKLKGIVRGDYSGWDDPRLPTLRAVRRR----------------GITPEAIRNFMLSIGVKRNDVNLSWKNIYAF 392 (560)
T ss_pred EecchhhhhhhhccCccCcCCccHHHHHHHHHC----------------CCCHHHHHHHHHHhCCCCCCceeeHHHHHHH
Confidence 9998764210000000 00000011111222 246888888888766 467888999987665
Q ss_pred c
Q 010832 467 K 467 (499)
Q Consensus 467 ~ 467 (499)
+
T Consensus 393 n 393 (560)
T TIGR00463 393 N 393 (560)
T ss_pred H
Confidence 3
No 71
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=99.42 E-value=2.3e-12 Score=138.48 Aligned_cols=129 Identities=10% Similarity=0.063 Sum_probs=88.0
Q ss_pred CCeEEEcCC------------CcccccchhHHHHHHHHhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCc
Q 010832 308 IPLIIVKSD------------GGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPK 375 (499)
Q Consensus 308 ~d~vl~ksD------------G~~~Y~t~DiA~~~~k~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~ 375 (499)
.|.|+.|.+ |.|+|. +|..++.. ..+.+++| .|.|+..+-++...+.++||+. .+.
T Consensus 208 rD~Vl~R~~~~~h~rtGdk~dgyPtYd---fA~vVDD~-l~gITHvl--Rg~E~l~~tp~q~~L~~aLg~~------~P~ 275 (601)
T PTZ00402 208 RDPVIYRVNLTPHARQGTKYKAYPTYD---FCCPIIDS-VEGVTHAL--RTNEYHDRNDQYYWFCDALGIR------KPI 275 (601)
T ss_pred cCCEEEEEcCCcccccCCCCceeeccC---cceeeEcc-ccCCceEe--echhhhhCcHHHHHHHHHhCCC------Cce
Confidence 477887754 555554 55556655 46888886 9999999998888899999984 468
Q ss_pred EEEEEeEEEecCCCCccccccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH----HHhhhhHHHHHhhc-C
Q 010832 376 ASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTA----EAVGYGAAKYFDLK-N 450 (499)
Q Consensus 376 ~~Hv~~g~V~~~~g~KMSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a----~~vg~~airy~~L~-~ 450 (499)
+.|.+ ++ +.+|.|||||++ ..++++.. -.+|++..+-++. +.+.+++||=|+.. .
T Consensus 276 ~~h~~--rL-n~~g~kLSKRkl-----~~lv~~g~------------v~GWdDprlpTi~glrRrG~~peai~~f~~~~G 335 (601)
T PTZ00402 276 VEDFS--RL-NMEYSVMSKRKL-----TQLVDTHV------------VDGWDDPRFPTVRALVRRGLKMEALRQFVQEQG 335 (601)
T ss_pred EEEEe--eE-cCCCCcccccCC-----hhhhhcCc------------ccccCCCccHhHHHHHHcCCCHHHHHHHHHHhC
Confidence 89985 44 578999999998 44444421 1234433332333 34556666655554 4
Q ss_pred CCCCCccccHHHHhcccC
Q 010832 451 NRLTNYTFSFDQMLNDKG 468 (499)
Q Consensus 451 ~~~~~~~Fd~~~~~~~~~ 468 (499)
-..++..|||+++.+++.
T Consensus 336 vsk~~~~~d~~~L~~~nr 353 (601)
T PTZ00402 336 MSKTVNFMEWSKLWYFNT 353 (601)
T ss_pred CCCCCcccCHHHHHHHHH
Confidence 567899999999887743
No 72
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=99.39 E-value=2.3e-12 Score=124.47 Aligned_cols=218 Identities=15% Similarity=0.065 Sum_probs=135.8
Q ss_pred ecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHHHHHHHHH
Q 010832 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRS 213 (499)
Q Consensus 134 ~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~ 213 (499)
=..|+|||+||+||+|++++....||-. .|-=+.| |.|..
T Consensus 5 RFAPsPtG~lHlG~~~~al~~~l~Ar~~--~G~~iLR---ieDtD----------------------------------- 44 (238)
T cd00807 5 RFPPEPNGYLHIGHAKAILLNFGYAKKY--GGRCNLR---FDDTN----------------------------------- 44 (238)
T ss_pred ecCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEE---ecCCC-----------------------------------
Confidence 3469999999999999999988888752 3433333 22311
Q ss_pred hcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeee-eccccccCcHHHHHHHHHHCCCe
Q 010832 214 KNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE-KGESFYNPYIPGVIDELSKQGLV 292 (499)
Q Consensus 214 ~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~-~~es~~~~~v~~~i~~L~~~g~~ 292 (499)
+. +....+.+.+.++++.||+..|. ...|.+.+.-.+++++|.++|.+
T Consensus 45 -------~~------------------------R~~~~~~~~I~~dL~wlGl~wD~~~~QS~r~~~Y~~~~~~L~~~g~a 93 (238)
T cd00807 45 -------PE------------------------KEEEEYVDSIKEDVKWLGIKPYKVTYASDYFDQLYEYAEQLIKKGKA 93 (238)
T ss_pred -------Cc------------------------ccchHHHHHHHHHHHHcCCCCCCceecccCHHHHHHHHHHHHHcCCe
Confidence 00 01223345777899999999862 23455556678999999999999
Q ss_pred EeecCeEEEEecCCCCCeEEEcCCCcccccchhHHHHHHHHhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCC
Q 010832 293 EESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDST 372 (499)
Q Consensus 293 y~~dGa~~~~~~g~~~d~vl~ksDG~~~Y~t~DiA~~~~k~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~ 372 (499)
|..- .+| .+.++ .|+|. +|..++.. ..+.+++| .|.|+-..-+++..+.+++|+.
T Consensus 94 Y~~~------~~~--~~~~i-----~ptY~---lA~vVDD~-~~gIThVv--RG~D~l~~t~~Q~~l~~aLg~~------ 148 (238)
T cd00807 94 YVHH------RTG--DKWCI-----YPTYD---FAHPIVDS-IEGITHSL--CTLEFEDRRPSYYWLCDALRLY------ 148 (238)
T ss_pred ecCC------CCC--CCEEE-----Eeccc---cceEeecc-ccCCCeEE--echhhhcCCHHHHHHHHHcCCC------
Confidence 9821 011 12333 36664 55666665 46888885 9999988888887889999995
Q ss_pred CCcEEEEEeEEEecCCCCccccccCCcccHHHH-H---HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhh
Q 010832 373 YPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDL-L---DEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDL 448 (499)
Q Consensus 373 ~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~dl-l---~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L 448 (499)
.+.+.|. +.+ +.+|.|||||.|.. .+++. + +.........+..+ + +-++|++-|+.
T Consensus 149 ~P~~~~~--~hl-n~~g~kLSKR~~~~-~i~~g~~~~wddpr~~~~~~l~~~----G------------~~peal~~~l~ 208 (238)
T cd00807 149 RPHQWEF--SRL-NLTYTVMSKRKLLQ-LVDEGYVDGWDDPRLPTLRGLRRR----G------------VTPEAIRQFIL 208 (238)
T ss_pred CCceeEE--EEE-CCCCCCccCcCchh-ccccCCcccccCcchHHHHHHHHc----C------------CCHHHHHHHHH
Confidence 2443332 344 47899999999732 11110 0 00000000111111 1 34666666555
Q ss_pred cC-CCCCCccccHHHHhccc
Q 010832 449 KN-NRLTNYTFSFDQMLNDK 467 (499)
Q Consensus 449 ~~-~~~~~~~Fd~~~~~~~~ 467 (499)
.- -..++..|||+++.+++
T Consensus 209 ~lG~s~~~~~~~~~~l~~~n 228 (238)
T cd00807 209 RQGVSKADSTIDWDKLEACV 228 (238)
T ss_pred HhCCCCCCcccCHHHHHHHH
Confidence 43 45799999999988775
No 73
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=99.39 E-value=6.8e-12 Score=133.98 Aligned_cols=118 Identities=10% Similarity=-0.022 Sum_probs=81.8
Q ss_pred CCeEEEcC-------CC-----cccccchhHHHHHHHHhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCc
Q 010832 308 IPLIIVKS-------DG-----GFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPK 375 (499)
Q Consensus 308 ~d~vl~ks-------DG-----~~~Y~t~DiA~~~~k~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~ 375 (499)
.|.|+.|+ +| .||| |+|..+... ..+.+|+| .|.+|..+-++...+.+++|+. ..+.
T Consensus 189 rD~Vi~R~~~~~H~r~G~k~~iyPtY---dfA~~vdD~-l~gITHvl--Rg~E~~~~t~~~~~i~~alg~~-----~~P~ 257 (554)
T PRK05347 189 RDPVLYRIRHAHHHRTGDKWCIYPMY---DFAHCISDA-IEGITHSL--CTLEFEDHRPLYDWVLDNLPIP-----PHPR 257 (554)
T ss_pred CCCEEEEecCCCCCccCCceeeecCc---Cccceeecc-ccCCceEE--eccccccChHHHHHHHHHcCCC-----CCCc
Confidence 37788887 46 4555 466666665 46888986 9999999999988999999852 1232
Q ss_pred EEEEEeEEEecCCCCccccccCCc------c---------cHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhh
Q 010832 376 ASHVGFGLVLGEDGKRLRTRFSEV------V---------RLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGY 440 (499)
Q Consensus 376 ~~Hv~~g~V~~~~g~KMSkR~G~~------v---------~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~ 440 (499)
.. .|+.+. .+|.|||||++.. + |+..|.+.+ +-+
T Consensus 258 ~~--~F~rln-~~~~~LSKRkl~~lV~~g~v~GWDDPRl~Ti~~lrrrG----------------------------~~P 306 (554)
T PRK05347 258 QY--EFSRLN-LTYTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRG----------------------------YTP 306 (554)
T ss_pred eE--EEEEEC-CCCCccccccchhccccCcccCccCCcchhHHHHHHCC----------------------------CCH
Confidence 22 235554 5788999999652 1 566665553 567
Q ss_pred hHHHHHhhcCC-CCCCccccHHHHhccc
Q 010832 441 GAAKYFDLKNN-RLTNYTFSFDQMLNDK 467 (499)
Q Consensus 441 ~airy~~L~~~-~~~~~~Fd~~~~~~~~ 467 (499)
+|||=|++..- ..++..++|+.+.+++
T Consensus 307 eAi~nf~~~lG~s~~~~~i~~~~L~~~n 334 (554)
T PRK05347 307 ESIREFCERIGVTKQDSVIDMSMLESCI 334 (554)
T ss_pred HHHHHHHHHhCCCCCCCeecHHHHHHHH
Confidence 88887777654 3567789998876653
No 74
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=5.2e-11 Score=129.62 Aligned_cols=134 Identities=20% Similarity=0.305 Sum_probs=95.0
Q ss_pred CCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHH
Q 010832 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (499)
Q Consensus 126 ~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~ 205 (499)
.+...+|--.-||+||.|||||+-+..+-|+|+|+-|+.||+|..+=..+-+|--...+.+....+-+. ...+
T Consensus 73 ~~~~f~i~~PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~DHAGIATQ~VVEK~l~~~~~---~~Rh---- 145 (995)
T KOG0432|consen 73 PGGVFVIPLPPPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLAREGG---KTRH---- 145 (995)
T ss_pred CCCcceeecCCCCcccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCccccchhHHHHHHHHHHHhcC---cchh----
Confidence 466788889999999999999999999999999999999999999999998886444333221111000 0000
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeeccccc-----cCcHH
Q 010832 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFY-----NPYIP 280 (499)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~~es~~-----~~~v~ 280 (499)
+..++.|.+ +.| ++.+.+-..+.+.+++||.++||..|-+- ...+.
T Consensus 146 -------------------~lgRe~F~~---------~vw-~Wk~e~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~AV~ 196 (995)
T KOG0432|consen 146 -------------------DLGREEFLK---------EVW-EWKEEYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVT 196 (995)
T ss_pred -------------------hcCHHHHHH---------HHH-HHHHHhCccHHHHHHHhcCcccccHhhcccCHHHHHHHH
Confidence 001111111 223 34566777888899999999999766433 24688
Q ss_pred HHHHHHHHCCCeEee
Q 010832 281 GVIDELSKQGLVEES 295 (499)
Q Consensus 281 ~~i~~L~~~g~~y~~ 295 (499)
+.+-+|.+.|++|..
T Consensus 197 eAFvrL~eeglIyR~ 211 (995)
T KOG0432|consen 197 EAFVRLHEEGLIYRA 211 (995)
T ss_pred HHHHHHHhcCceEec
Confidence 999999999999963
No 75
>PLN02907 glutamate-tRNA ligase
Probab=99.38 E-value=4.3e-12 Score=141.04 Aligned_cols=239 Identities=14% Similarity=0.130 Sum_probs=149.7
Q ss_pred ceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHHH
Q 010832 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (499)
Q Consensus 128 ~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (499)
.+|+. =-.|+|||+|||||+|++++-..+|| ++-|-=+.| ++|...
T Consensus 212 ~~v~t-RFaPsPtG~LHiG~ar~al~n~~~Ar--~~~G~~iLR---~eDTdp---------------------------- 257 (722)
T PLN02907 212 GKVCT-RFPPEPSGYLHIGHAKAALLNQYFAR--RYKGKLIVR---FDDTNP---------------------------- 257 (722)
T ss_pred CceEE-eeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEE---ecCCCC----------------------------
Confidence 34554 55699999999999999999999998 344544444 233211
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeee-eccccccCcHHHHHHHH
Q 010832 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE-KGESFYNPYIPGVIDEL 286 (499)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~-~~es~~~~~v~~~i~~L 286 (499)
. +....+.+.+.++++.||+..|. ...|.|.+...+..++|
T Consensus 258 --------------~------------------------r~~~e~~~~I~~dl~wLG~~~d~~~~qS~r~~~y~~~a~~L 299 (722)
T PLN02907 258 --------------S------------------------KESDEFVENILKDIETLGIKYDAVTYTSDYFPQLMEMAEKL 299 (722)
T ss_pred --------------C------------------------cCChHHHHHHHHHHHHcCCCCCCcccccccHHHHHHHHHHH
Confidence 0 00122334566677777777652 22355555666777777
Q ss_pred HHCCCeEee----------------------------------------cCeEEEEecC-------CCCCeEEEcCCCcc
Q 010832 287 SKQGLVEES----------------------------------------QGARVIFIEG-------VNIPLIIVKSDGGF 319 (499)
Q Consensus 287 ~~~g~~y~~----------------------------------------dGa~~~~~~g-------~~~d~vl~ksDG~~ 319 (499)
+++|.+|.. +|..++++.- .-.|.|+.|.+|++
T Consensus 300 i~~G~aY~~~~~~~~~~~~~~~~~~~~~R~~~~ee~~~~~~~m~~g~~~~~~~~lR~k~d~~~~n~~~~D~v~~R~~~~~ 379 (722)
T PLN02907 300 IKEGKAYVDDTPREQMRKERMDGIESKCRNNSVEENLRLWKEMIAGSERGLQCCVRGKLDMQDPNKSLRDPVYYRCNPTP 379 (722)
T ss_pred HHcCCeeecCCCHHHHHHHHhcCCCCCccCCCHHHHHHHHHHHhcccccCCCeEEEEEcccCCCCCCcccCEEEEecCCc
Confidence 777777731 1223333321 11378899998743
Q ss_pred c---------ccchhHHHHHHHHhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCC
Q 010832 320 N---------YASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK 390 (499)
Q Consensus 320 ~---------Y~t~DiA~~~~k~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~ 390 (499)
- |.|=|+|..++.. ..+.+++| .|.||..+-++...+.++||+. .+...| |+.++ .+|.
T Consensus 380 h~~~gd~~~~~PtY~fa~~vdD~-~~gIThvl--Rg~e~~~~t~~q~~l~~~lg~~------~p~~~~--f~~l~-~~~~ 447 (722)
T PLN02907 380 HHRIGSKYKVYPTYDFACPFVDA-LEGVTHAL--RSSEYHDRNAQYYRILEDMGLR------KVHIWE--FSRLN-FVYT 447 (722)
T ss_pred ccccCCccceeeccCCceEEEcc-cCCCceEe--ecHhhhhChHHHHHHHHHcCCC------CCeeEE--EEEEc-CCCc
Confidence 2 3333455555554 46788886 9999999888888899999984 222222 45555 6788
Q ss_pred ccccccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH----hhhhHHHHHhhcCC-CCCCccccHHHHhc
Q 010832 391 RLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEA----VGYGAAKYFDLKNN-RLTNYTFSFDQMLN 465 (499)
Q Consensus 391 KMSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~----vg~~airy~~L~~~-~~~~~~Fd~~~~~~ 465 (499)
|||||+ |..++++. --.+|++..+-.+... +.+++++=|++... ..++..|||+++.+
T Consensus 448 ~lSKR~-----l~~~v~~g------------~v~Gwddpr~pt~~~~rrrG~~~eai~~f~~~~g~s~~~~~~~~~~l~~ 510 (722)
T PLN02907 448 LLSKRK-----LQWFVDNG------------KVEGWDDPRFPTVQGIVRRGLKIEALKQFILSQGASKNLNLMEWDKLWT 510 (722)
T ss_pred cccccc-----hHhHhhcC------------cccCCCCCCcccHHHHHHcCCCHHHHHHHHHHhCCCcCCccccHHHHHH
Confidence 999998 55555553 1234554332222222 56788877766654 57889999999887
Q ss_pred cc
Q 010832 466 DK 467 (499)
Q Consensus 466 ~~ 467 (499)
++
T Consensus 511 ~n 512 (722)
T PLN02907 511 IN 512 (722)
T ss_pred HH
Confidence 64
No 76
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=2e-11 Score=123.89 Aligned_cols=136 Identities=16% Similarity=0.146 Sum_probs=98.7
Q ss_pred CCCeEEEcCCCcccccchhHHHHHHHHhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEec
Q 010832 307 NIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLG 386 (499)
Q Consensus 307 ~~d~vl~ksDG~~~Y~t~DiA~~~~k~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~ 386 (499)
..|+||.||||-|||.- |...+.. ..+..++| .|.+|---...+..+.+|+||. .+++.|++. +.+
T Consensus 211 ~gD~VvmKSDgfPTYHf---AnVVDDh-~M~IsHVi--RGeEWlpST~KH~lLYkAfgW~------pPkFaHlpL--l~n 276 (524)
T KOG1149|consen 211 EGDPVVMKSDGFPTYHF---ANVVDDH-LMGISHVI--RGEEWLPSTLKHILLYKAFGWQ------PPKFAHLPL--LLN 276 (524)
T ss_pred CCCcEEEecCCCcceee---eeeecch-hcchhhee--ecchhccccHHHHHHHHHhCCC------CCceeeeee--eec
Confidence 56899999999999974 4444544 35677876 8999876666776788999996 378999974 777
Q ss_pred CCCCccccccCCcccHHHHHHHHH--HHHHHHHHHhc-----CCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCcccc
Q 010832 387 EDGKRLRTRFSEVVRLVDLLDEAK--NRSKAVLIERG-----KDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFS 459 (499)
Q Consensus 387 ~~g~KMSkR~G~~v~l~dll~e~~--~~a~~~~~~~~-----~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd 459 (499)
++|.|+|||.|.+ +++++.+++. +...+.+..-| .+..++-+ +-+--|.+.+-..++..+|
T Consensus 277 ~d~sKLSKRqgD~-~vs~~~e~G~LPeallN~ial~Gwg~~~~~~f~sl~-----------eLieqF~i~~ltk~~a~ld 344 (524)
T KOG1149|consen 277 PDGSKLSKRQGDA-SVSHYREQGYLPEALLNYIALLGWGFRTENEFFSLE-----------ELIEQFSIERLTKSNAILD 344 (524)
T ss_pred CCcchhhhhcCcc-hHHHHHHcCCChHHHHHHHHHcCCCcccccccccHH-----------HHHHHhchhhhcccccccC
Confidence 9999999999955 7888877765 44566665432 11222222 2344577777788888999
Q ss_pred HHHHhcccC
Q 010832 460 FDQMLNDKG 468 (499)
Q Consensus 460 ~~~~~~~~~ 468 (499)
.+++..+|+
T Consensus 345 ~ekL~~~Nr 353 (524)
T KOG1149|consen 345 SEKLRFLNR 353 (524)
T ss_pred HHHHHHHHH
Confidence 999887754
No 77
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=99.30 E-value=1.5e-12 Score=119.26 Aligned_cols=54 Identities=56% Similarity=1.016 Sum_probs=51.6
Q ss_pred HhhhhHHHHHhhcCCCCCCccccHHHHhcccCCchhHHHHHHHHHHHHHHHhCC
Q 010832 437 AVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGK 490 (499)
Q Consensus 437 ~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~n~~~YlqYa~aR~~silrk~~~ 490 (499)
.+|++|+||++|++++.++++|||+++++++|||+|||||||+|+++|++|++.
T Consensus 2 ~i~~~a~~~~~l~~~~~~~~~fd~~~~~~~~~~~~~yi~ya~aRi~nIl~k~~~ 55 (156)
T cd07956 2 EVGVGAVKYQDLSNKRIKDYTFDWERMLSFEGDTGPYLQYAHARLCSILRKAGE 55 (156)
T ss_pred ccchhHHHHHHHhcCCCCCceecHHHHHhhcCCCchhHHHHHHHHHHHHHhCCC
Confidence 378999999999999999999999999999999999999999999999999873
No 78
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=99.24 E-value=7.3e-11 Score=134.05 Aligned_cols=120 Identities=21% Similarity=0.201 Sum_probs=93.2
Q ss_pred eEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHHHH
Q 010832 129 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 208 (499)
Q Consensus 129 ~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l~~ 208 (499)
+..|--.-|+|+|+|||||+++.++.|+++|++|+.|++|.+....+++|.++...+.. .+
T Consensus 33 ~~~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~-----------~g-------- 93 (805)
T PRK00390 33 KYYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIK-----------TG-------- 93 (805)
T ss_pred CEEEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHH-----------cC--------
Confidence 44443445999999999999999999999999999999999999999999877633210 00
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeecc-----ccccCcHHHHH
Q 010832 209 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPGVI 283 (499)
Q Consensus 209 ~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~~e-----s~~~~~v~~~i 283 (499)
..| +++++.+.+.+++.+++||+.+||..+ ..|...+.+++
T Consensus 94 ----------~~~------------------------~~~~~~~~~~~~~~~~~lGi~~Dw~~~~~T~~~~~~~~v~~~f 139 (805)
T PRK00390 94 ----------THP------------------------AEWTYENIANMKKQLKSLGFSYDWSREIATCDPEYYKWTQWIF 139 (805)
T ss_pred ----------CCH------------------------HHHHHHHHHHHHHHHHHhCCcccCCCCeecCCHHHHHHHHHHH
Confidence 111 235777788999999999999987432 34567799999
Q ss_pred HHHHHCCCeEeecCeEEE
Q 010832 284 DELSKQGLVEESQGARVI 301 (499)
Q Consensus 284 ~~L~~~g~~y~~dGa~~~ 301 (499)
.+|.++|++|+.+.-+++
T Consensus 140 ~~L~~~Gliy~~~~~v~w 157 (805)
T PRK00390 140 LKLYEKGLAYRKESPVNW 157 (805)
T ss_pred HHHHHCCCEEEecCEEEe
Confidence 999999999986554444
No 79
>PLN02859 glutamine-tRNA ligase
Probab=99.24 E-value=8.3e-11 Score=129.61 Aligned_cols=107 Identities=13% Similarity=0.046 Sum_probs=76.4
Q ss_pred ccchhHHHHHHHHhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCc-
Q 010832 321 YASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEV- 399 (499)
Q Consensus 321 Y~t~DiA~~~~k~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~- 399 (499)
|-|=|+|..+... ..+.+|+| .|.+|..+-++...+++++|+. .+.+.|. +.+ +.+|.+||||++..
T Consensus 441 yPtYdFA~~vdD~-legITHvL--Rg~E~~~~~~~y~wl~~aLg~~------~P~~~~f--~rL-n~~~t~LSKRkl~~l 508 (788)
T PLN02859 441 YPSYDYAHCIVDS-LENITHSL--CTLEFETRRASYYWLLDSLGLY------QPYVWEY--SRL-NVTNTVMSKRKLNRL 508 (788)
T ss_pred Eeccccccccccc-ccCCceEe--echhhhcCCHHHHHHHHHcCCC------CCcEEee--eeE-CCCCCcccCcCchhc
Confidence 5555667666665 46888886 9999998888888899999984 4677787 544 57899999999864
Q ss_pred --------------ccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCC-CCc-cccHHHH
Q 010832 400 --------------VRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRL-TNY-TFSFDQM 463 (499)
Q Consensus 400 --------------v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~-~~~-~Fd~~~~ 463 (499)
.|+..|.+.+ +-++|||=|+...-.. ++- .|+|+.+
T Consensus 509 V~~g~V~GWDDPRl~Tl~glRrrG----------------------------~~PeAi~nFi~~lG~s~~~~e~i~~~~L 560 (788)
T PLN02859 509 VTEKYVDGWDDPRLLTLAGLRRRG----------------------------VTPTAINAFCRGIGITRSDNSLIRMDRL 560 (788)
T ss_pred cccCcccCCCCCcchhHHHHHHCC----------------------------CCHHHHHHHHHHhCCCCCCCceecHHHH
Confidence 2455554443 5678888887766544 333 5899888
Q ss_pred hccc
Q 010832 464 LNDK 467 (499)
Q Consensus 464 ~~~~ 467 (499)
.+++
T Consensus 561 e~~~ 564 (788)
T PLN02859 561 EHHI 564 (788)
T ss_pred HhhC
Confidence 5553
No 80
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=99.24 E-value=8.8e-11 Score=133.78 Aligned_cols=119 Identities=19% Similarity=0.178 Sum_probs=92.9
Q ss_pred ceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHHH
Q 010832 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (499)
Q Consensus 128 ~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (499)
+++.|--.-|+|+|.|||||+|+.+++|+++|++|+.||+|.+....+++|.++...+.. .+
T Consensus 29 ~k~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~-----------~g------- 90 (842)
T TIGR00396 29 PKYYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIK-----------RG------- 90 (842)
T ss_pred CCEEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHH-----------cC-------
Confidence 444444469999999999999999999999999999999999999999999877643310 00
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeecc-----ccccCcHHHH
Q 010832 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPGV 282 (499)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~~e-----s~~~~~v~~~ 282 (499)
..| +++++.+.+.+++.+++||+.+||..+ ..|...++++
T Consensus 91 -----------~~p------------------------~~~~~~~~~~~~~~~~~lG~~~Dw~~~~~T~d~~y~~~~~~~ 135 (842)
T TIGR00396 91 -----------IHP------------------------AKWTYENIANMKKQLQALGFSYDWDREIATCDPEYYKWTQWI 135 (842)
T ss_pred -----------CCH------------------------HHHHHHHHHHHHHHHHHhCCcccCCCCcccCCHHHHHHHHHH
Confidence 111 134677778899999999999988432 3455678999
Q ss_pred HHHHHHCCCeEeecCeE
Q 010832 283 IDELSKQGLVEESQGAR 299 (499)
Q Consensus 283 i~~L~~~g~~y~~dGa~ 299 (499)
+.+|.++|++|+.+.-+
T Consensus 136 F~~L~~kGliy~~~~~v 152 (842)
T TIGR00396 136 FLELFEKGLAYVKEADV 152 (842)
T ss_pred HHHHHHCCCeEeeccce
Confidence 99999999999754433
No 81
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=99.23 E-value=2.9e-10 Score=126.53 Aligned_cols=120 Identities=13% Similarity=0.006 Sum_probs=76.8
Q ss_pred CeEEEcCCCcc---------cccchhHHHHHHHHhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEE
Q 010832 309 PLIIVKSDGGF---------NYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHV 379 (499)
Q Consensus 309 d~vl~ksDG~~---------~Y~t~DiA~~~~k~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv 379 (499)
|.|+.|.++++ .|-|=|+|..+... ..+.+|+| .|.+|..+-+....++++||..+ ..+...
T Consensus 192 D~v~~R~~~~~H~~~Gd~~~i~PtYdfa~~vdD~-l~gITHvl--Rg~E~~~~~~~~~~l~~~l~~~~----~~P~~~-- 262 (771)
T PRK14703 192 DPLLYRIRHAHHYRTGDEWCIYPMYDFAHPLEDA-IEGVTHSI--CTLEFENNRAIYDWVLDHLGPWP----PRPRQY-- 262 (771)
T ss_pred CCEEEEEcCCCCCCcCCCCCcCCCccccceeecc-ccCCcEEE--ecHhhhhccHHHHHHHHHhCCCC----CCccee--
Confidence 78888875322 24444566555555 46888886 99999888888888899996421 112222
Q ss_pred EeEEEecCCCCcccccc-------CCcc--------cHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHH
Q 010832 380 GFGLVLGEDGKRLRTRF-------SEVV--------RLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAK 444 (499)
Q Consensus 380 ~~g~V~~~~g~KMSkR~-------G~~v--------~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~air 444 (499)
.|+.+.. .|.+||||+ |-+- |+..+.+.+ +-++|||
T Consensus 263 ~f~rl~l-~~~~lSKRkl~~lV~~g~v~GWDDPRlpti~~lrrrG----------------------------~~peAi~ 313 (771)
T PRK14703 263 EFARLAL-GYTVMSKRKLRELVEEGYVSGWDDPRMPTIAGQRRRG----------------------------VTPEAIR 313 (771)
T ss_pred EEEEecc-CCCcccccCchhccccCcccCCCCCchhhHHHHHHCC----------------------------CCHHHHH
Confidence 2455553 577999998 4321 344443332 5688888
Q ss_pred HHhhcCC-CCCCccccHHHHhcc
Q 010832 445 YFDLKNN-RLTNYTFSFDQMLND 466 (499)
Q Consensus 445 y~~L~~~-~~~~~~Fd~~~~~~~ 466 (499)
-|++..- ..++..++|+.+.+.
T Consensus 314 ~f~~~lG~s~~~~~i~~~~L~~~ 336 (771)
T PRK14703 314 DFADQIGVAKTNSTVDIGVLEFA 336 (771)
T ss_pred HHHHHhCCCccCceecHHHHHHH
Confidence 8777654 457778999887654
No 82
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=9.9e-11 Score=130.23 Aligned_cols=114 Identities=25% Similarity=0.278 Sum_probs=95.7
Q ss_pred ceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHHH
Q 010832 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (499)
Q Consensus 128 ~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (499)
+|..|-..=|.|+|.|||||.|+..+||++||+.|+.||+|..-+..+=+|.++...|...
T Consensus 34 ~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwdafGlPae~~A~~~------------------- 94 (814)
T COG0495 34 EKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKI------------------- 94 (814)
T ss_pred CceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCcccccCchHHHHHHHh-------------------
Confidence 5788889999999999999999999999999999999999999999999888776444211
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeecc-----ccccCcHHHH
Q 010832 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPGV 282 (499)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~~e-----s~~~~~v~~~ 282 (499)
..+| ..++......+++.+++||.++||..| ..|...++.+
T Consensus 95 ----------~~~P------------------------~~wt~~ni~~~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~ 140 (814)
T COG0495 95 ----------GTDP------------------------AKWTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQ 140 (814)
T ss_pred ----------CCCh------------------------HHHHHHHHHHHHHHHHHhCCccccccceecCCccHHHHHHHH
Confidence 1122 234777889999999999999999655 2466779999
Q ss_pred HHHHHHCCCeEe
Q 010832 283 IDELSKQGLVEE 294 (499)
Q Consensus 283 i~~L~~~g~~y~ 294 (499)
+.+|.++|++|.
T Consensus 141 F~kL~ekGL~y~ 152 (814)
T COG0495 141 FLKLYEKGLAYR 152 (814)
T ss_pred HHHHHHCCCEEe
Confidence 999999999996
No 83
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=99.22 E-value=2e-10 Score=122.49 Aligned_cols=126 Identities=10% Similarity=-0.046 Sum_probs=81.0
Q ss_pred cchhHHHHHHHHhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCc--
Q 010832 322 ASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEV-- 399 (499)
Q Consensus 322 ~t~DiA~~~~k~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~-- 399 (499)
-|=|+|..+... ..+.+|+| .|.+|..+-+....+...+++.. .+.. ..|+.++ .+|.|||||++..
T Consensus 183 PtYdfa~~vdD~-l~gITHvi--Rg~E~~~nt~~Y~~~~~~l~~~~-----~P~~--~~F~rln-~~~~kLSKRk~~~~V 251 (522)
T TIGR00440 183 PMYDFTHCISDA-MENITHSL--CTLEFQDNRRLYDWVLDNIHIFP-----RPAQ--YEFSRLN-LEGTVLSKRKLAQLV 251 (522)
T ss_pred eCcCCceeehhc-cCCCceEe--ecHhhhhcHHHHHHHHHhcCccC-----CCce--EEEEEEC-CCCCCcccccchhcc
Confidence 333456666665 46888886 99999888777667777777631 1222 2356555 6789999999875
Q ss_pred -------------ccHHHHHHHHH--HHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHH
Q 010832 400 -------------VRLVDLLDEAK--NRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQM 463 (499)
Q Consensus 400 -------------v~l~dll~e~~--~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~ 463 (499)
.|+..+.+.+. +..++.+..-|-...-+..++..+ -+.+|.|++.+.++.+..||..++
T Consensus 252 ~~g~v~GWdDPRl~Ti~~lrrrG~~PeAi~nfl~~lG~s~~~~~~e~~~l-----~~~~r~f~~~~~~r~~av~d~~kl 325 (522)
T TIGR00440 252 DDKFVRGWDDPRMPTISGLRRRGYTPASIREFCNRIGVTKQDNNIEVVRL-----ESCIREDLNENAPRAMAVIDPVEV 325 (522)
T ss_pred ccCcccCCCCCccccHHHHHHCCCCHHHHHHHHHHhCCCCCCCceehhhH-----HHHHHHhhhhcCcccccccccceE
Confidence 37888877765 334555554322111011122222 245789999999999999999987
No 84
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=99.18 E-value=2.8e-10 Score=132.32 Aligned_cols=133 Identities=20% Similarity=0.246 Sum_probs=99.5
Q ss_pred CCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHH-hhCCCCCccccchHH
Q 010832 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLF-EKFPNSEDANETAIG 204 (499)
Q Consensus 126 ~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~-~~~~~~~~~~~~~i~ 204 (499)
.+++++|...-|||||.|||||+++.++.|+++|+.|+.|++|.+....+.+|..+...++.-. .. .+....
T Consensus 58 ~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl~~~~~vE~~l~~~-------~~~~~~ 130 (995)
T PTZ00419 58 SGKKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGIATQVVVEKKLMKE-------ENKTRH 130 (995)
T ss_pred CCCeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCchhhHHHHHHHHHHh-------cCCChH
Confidence 3567999999999999999999999999999999999999999999999999987654432210 00 001011
Q ss_pred HHHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeecc-----ccccCcH
Q 010832 205 ELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYI 279 (499)
Q Consensus 205 ~l~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~~e-----s~~~~~v 279 (499)
++ |.++.++..+++++.+...+++.+++||+.+||..+ ..|...+
T Consensus 131 ~~------------------------------~~e~f~~~~~~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v 180 (995)
T PTZ00419 131 DL------------------------------GREEFLKKVWEWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAV 180 (995)
T ss_pred Hc------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHH
Confidence 00 111222333456788889999999999999998543 2344578
Q ss_pred HHHHHHHHHCCCeEee
Q 010832 280 PGVIDELSKQGLVEES 295 (499)
Q Consensus 280 ~~~i~~L~~~g~~y~~ 295 (499)
.+++.+|.++|++|+.
T Consensus 181 ~~~F~~l~~~Gliyr~ 196 (995)
T PTZ00419 181 KEAFVRLYEDGLIYRD 196 (995)
T ss_pred HHHHHHHHHCCCEEec
Confidence 9999999999999963
No 85
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=8e-10 Score=124.22 Aligned_cols=131 Identities=21% Similarity=0.233 Sum_probs=94.6
Q ss_pred CceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHH
Q 010832 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (499)
Q Consensus 127 ~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l 206 (499)
+++.++.=.-|.-||.+||||+-|-++=|++.|...+.||+|.++...+=+|.+|..-++. +++- .+..+.+
T Consensus 48 ~~~FvfhDGPPyANG~iHiGHalnKilKDiI~Ry~~m~G~~v~~~pGWDcHGLPIE~~vek---~lg~----~k~~i~~- 119 (933)
T COG0060 48 KPKFVLHDGPPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVPGWDCHGLPIELKVEK---KLGI----GKKDIES- 119 (933)
T ss_pred CCcEEEeCCCCCCCCCcchhhhHHHhhhhhhhhhhcccCCcCCCCCCCcCCCchHHHHHHH---HhCC----Ccchhhh-
Confidence 4456665677899999999999999999999999999999999999999999998854421 1221 0011110
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeecc--c---cccCcHHH
Q 010832 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE--S---FYNPYIPG 281 (499)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~~e--s---~~~~~v~~ 281 (499)
+ .-.+|. +.+++++..+.+..++.+.||||-.||..- + .|...+-.
T Consensus 120 ----------~-~~~efr------------------~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~ 170 (933)
T COG0060 120 ----------F-GVEEFR------------------EKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWW 170 (933)
T ss_pred ----------c-CHHHHH------------------HHHHHHHHHHHHHHHHHHHhheEeeccCCCeecCCHHHHHHHHH
Confidence 0 001333 334556777888899999999999887421 2 23455678
Q ss_pred HHHHHHHCCCeEe
Q 010832 282 VIDELSKQGLVEE 294 (499)
Q Consensus 282 ~i~~L~~~g~~y~ 294 (499)
++.+|.++|++|+
T Consensus 171 ~f~~~~~kGllyr 183 (933)
T COG0060 171 AFKELYEKGLLYR 183 (933)
T ss_pred HHHHHHHCCCeec
Confidence 8999999999884
No 86
>PLN02381 valyl-tRNA synthetase
Probab=99.17 E-value=2.4e-10 Score=132.74 Aligned_cols=133 Identities=17% Similarity=0.215 Sum_probs=99.6
Q ss_pred CCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHH
Q 010832 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (499)
Q Consensus 126 ~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~ 205 (499)
.+++++|....||+||+|||||+++.++.|+++|+.|+.||+|.+....+.+|..+...++.- .... .+....+
T Consensus 126 ~~~~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~---l~~~---~~~~~~~ 199 (1066)
T PLN02381 126 SKPPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEKK---LMRE---RHLTRHD 199 (1066)
T ss_pred CCCcEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCcChHHHHHHHH---hHhh---cCCChhh
Confidence 356699999999999999999999999999999999999999999999999999886554210 0000 0000000
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeecc-----ccccCcHH
Q 010832 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIP 280 (499)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~~e-----s~~~~~v~ 280 (499)
+ |..+.++..+++++.+...+++.+++||+++||..+ ..|...+.
T Consensus 200 -----------~-------------------~re~f~~~~~~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~ 249 (1066)
T PLN02381 200 -----------I-------------------GREEFVSEVWKWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVT 249 (1066)
T ss_pred -----------C-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHH
Confidence 0 001122333456888889999999999999998544 23456789
Q ss_pred HHHHHHHHCCCeEe
Q 010832 281 GVIDELSKQGLVEE 294 (499)
Q Consensus 281 ~~i~~L~~~g~~y~ 294 (499)
+++.+|.++|++|+
T Consensus 250 ~~F~~L~~~GlIyr 263 (1066)
T PLN02381 250 EAFVRLYKEGLIYR 263 (1066)
T ss_pred HHHHHHHHCCCEEe
Confidence 99999999999996
No 87
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=99.16 E-value=2.2e-10 Score=132.12 Aligned_cols=139 Identities=19% Similarity=0.252 Sum_probs=101.2
Q ss_pred CceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHH
Q 010832 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (499)
Q Consensus 127 ~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l 206 (499)
.++++|...-|||||+|||||+|+.++.|+++|+.|++|++|.+....+..|+++...+..+....+. ..
T Consensus 24 ~~kf~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi~~~aek~~~~~~~----~~------ 93 (938)
T TIGR00395 24 REKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPILGLAELIKRRDEL----TI------ 93 (938)
T ss_pred CCceEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCCchHHHHHHhhhhhhh----cc------
Confidence 56799999999999999999999999999999999999999999999999999998776543211000 00
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeecc-----ccccCcHHH
Q 010832 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPG 281 (499)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~~e-----s~~~~~v~~ 281 (499)
+.|.... .. ...+|.+. .+| +.+++.+...+++.+++||+++||..+ ..|...+..
T Consensus 94 -~~~~~~~-~i-~~~~i~~~----------~~~------~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v~~ 154 (938)
T TIGR00395 94 -KNYTEVH-AI-PREELLKF----------TDP------EYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEW 154 (938)
T ss_pred -ccchhhc-cC-CHHHHHhh----------cCH------HHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHHHH
Confidence 0010000 00 01111111 111 356788889999999999999998544 234567899
Q ss_pred HHHHHHHCCCeEe
Q 010832 282 VIDELSKQGLVEE 294 (499)
Q Consensus 282 ~i~~L~~~g~~y~ 294 (499)
++.+|.++|++|.
T Consensus 155 ~f~~L~e~G~iy~ 167 (938)
T TIGR00395 155 QMNKLKELGLIVK 167 (938)
T ss_pred HHHHHHHCCCEec
Confidence 9999999999995
No 88
>PLN02563 aminoacyl-tRNA ligase
Probab=99.16 E-value=3.6e-10 Score=129.49 Aligned_cols=117 Identities=21% Similarity=0.166 Sum_probs=90.6
Q ss_pred ceEEEEecCCCCCCC-CccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHH
Q 010832 128 KKAVVDFSSPNIAKE-MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (499)
Q Consensus 128 ~~v~Ve~~SpNp~~p-lHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l 206 (499)
+++.|--.-|+|+|. |||||+|+.+++|+++|+.|+.||+|.+....+.+|.++...+.. .+
T Consensus 110 ~k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~-----------~g------ 172 (963)
T PLN02563 110 PKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIE-----------TG------ 172 (963)
T ss_pred CCEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHH-----------cC------
Confidence 444544455999996 999999999999999999999999999999999999987643210 00
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeecc-----ccccCcHHH
Q 010832 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPG 281 (499)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~~e-----s~~~~~v~~ 281 (499)
..| +..+......+++.+++||+++||..+ ..|...++.
T Consensus 173 ------------~~p------------------------~~~~~~~i~~~~~q~~~lG~s~DW~r~~~T~dp~y~~~~q~ 216 (963)
T PLN02563 173 ------------THP------------------------KITTLKNIARFRSQLKSLGFSYDWDREISTTEPEYYKWTQW 216 (963)
T ss_pred ------------CCh------------------------HHhHHHHHHHHHHHHHHhCcEeeCCCCeecCCHHHHHHHHH
Confidence 011 112456668889999999999998533 345567899
Q ss_pred HHHHHHHCCCeEeecC
Q 010832 282 VIDELSKQGLVEESQG 297 (499)
Q Consensus 282 ~i~~L~~~g~~y~~dG 297 (499)
++.+|.++|++|+.+.
T Consensus 217 ~F~~L~~~GliY~~~~ 232 (963)
T PLN02563 217 IFLQLLKRGLAYQAEV 232 (963)
T ss_pred HHHHHHHCCCEEeeee
Confidence 9999999999998543
No 89
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=99.08 E-value=1.2e-09 Score=126.61 Aligned_cols=133 Identities=20% Similarity=0.184 Sum_probs=100.8
Q ss_pred CCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHH
Q 010832 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (499)
Q Consensus 126 ~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~ 205 (499)
.+++..+...-|||||.|||||+++.++.|+++|+.++.||+|.+....+-+|.++...++.. .+-. ....+.+
T Consensus 39 ~~~~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD~~GlPie~~vek~---l~~~---~~~~i~~ 112 (975)
T PRK06039 39 GGPEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKE---LGIS---GKKDIEE 112 (975)
T ss_pred CCCCEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcCCCccHHHHHHHHH---hCcc---cccchhh
Confidence 356789999999999999999999999999999999999999999999999999998665321 1100 0111111
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeecc-----ccccCcHH
Q 010832 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIP 280 (499)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~~e-----s~~~~~v~ 280 (499)
+ ..++|. +..++++..+.+.+++.+++||+.+||..+ ..|...+.
T Consensus 113 -----------~-g~~~f~------------------~~c~~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~ 162 (975)
T PRK06039 113 -----------Y-GIEKFN------------------EKCRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVW 162 (975)
T ss_pred -----------c-CHHHHH------------------HHHHHHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHH
Confidence 1 012232 333456778888999999999999998543 23456788
Q ss_pred HHHHHHHHCCCeEe
Q 010832 281 GVIDELSKQGLVEE 294 (499)
Q Consensus 281 ~~i~~L~~~g~~y~ 294 (499)
.++.+|.++|++|+
T Consensus 163 ~~F~~l~~kGliyr 176 (975)
T PRK06039 163 WALKQLYDKGLLYK 176 (975)
T ss_pred HHHHHHHHCCCEEe
Confidence 99999999999995
No 90
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=99.04 E-value=2.6e-09 Score=114.31 Aligned_cols=106 Identities=14% Similarity=0.103 Sum_probs=63.2
Q ss_pred ccchhHHHHHHHHhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCc-
Q 010832 321 YASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEV- 399 (499)
Q Consensus 321 Y~t~DiA~~~~k~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~- 399 (499)
|-|=|+|..+... ..+.+|+| .+-++..+-+...-+++.+|+. .+... .|+.++ .+|.+||||++..
T Consensus 228 yPtYdFa~~vdD~-l~gITHvl--ct~Ef~~r~~~y~wl~~~l~l~------~p~~~--ef~rln-~~~~~LSKRkl~~l 295 (574)
T PTZ00437 228 YPSYDFTHCLIDS-LEDIDYSL--CTLEFETRRESYFWLLEELNLW------RPHVW--EFSRLN-VTGSLLSKRKINVL 295 (574)
T ss_pred EccCcccceeech-hcCCCEEe--eechhhcccHHHHHHHHHhCCc------ccceE--eeeeec-CCCceeeccchHHh
Confidence 3334556555554 35777775 4455544444433456778763 12222 346665 6788999999853
Q ss_pred --------------ccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCC-CCCCccccHHHHh
Q 010832 400 --------------VRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNN-RLTNYTFSFDQML 464 (499)
Q Consensus 400 --------------v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~-~~~~~~Fd~~~~~ 464 (499)
.|+..|...+ +-++||+=|++..- .+++..++|+.+.
T Consensus 296 V~~g~V~GWDDPRl~Ti~glrrrG----------------------------~~peAi~~f~~~~G~sk~~~~i~~~~Le 347 (574)
T PTZ00437 296 VRKGIVRGFDDPRLLTLAGMRRRG----------------------------YTPAAINRFCELVGITRSMNVIQISMLE 347 (574)
T ss_pred cccCccCCCCCCcchhHHHHHHCC----------------------------CCHHHHHHHHHHhCCCccceEeeHHHHH
Confidence 2344443332 56788887777654 3567788888876
Q ss_pred cc
Q 010832 465 ND 466 (499)
Q Consensus 465 ~~ 466 (499)
+.
T Consensus 348 ~~ 349 (574)
T PTZ00437 348 NT 349 (574)
T ss_pred HH
Confidence 54
No 91
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=99.03 E-value=2.6e-09 Score=124.83 Aligned_cols=132 Identities=20% Similarity=0.150 Sum_probs=99.4
Q ss_pred CceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHH
Q 010832 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (499)
Q Consensus 127 ~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l 206 (499)
+++.++.-.-||+||.+||||+++.++.|+++|+.++.||+|.+....+.+|.++...++. ..+-. ....+.++
T Consensus 101 ~~~Fv~~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vEk---~lg~~---~k~~i~~~ 174 (1205)
T PTZ00427 101 KKAYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGLPIEYEIEK---ENNIN---KKEDILKM 174 (1205)
T ss_pred CCcEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCccCCCCcHHHHHHHH---HhCCC---cccchhhc
Confidence 4568889999999999999999999999999999999999999999999999999866532 11100 00111110
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeecc-----ccccCcHHH
Q 010832 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPG 281 (499)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~~e-----s~~~~~v~~ 281 (499)
. -.+|. +..++++..+...+++.+++||+..||..+ ..|...+..
T Consensus 175 -----------g-~~~f~------------------e~c~~~~~~~~~~~~~~~~rlG~~iDw~~~y~T~d~~~~~~v~~ 224 (1205)
T PTZ00427 175 -----------G-IDVYN------------------EKCRGIVLKYSNEWVKTVERIGRWIDFKNDYKTMDKTFMESVWW 224 (1205)
T ss_pred -----------C-HHHHH------------------HHHHHHHHHHHHHHHHHHHHhCcEEecCCCcCcCCHHHHHHHHH
Confidence 0 01222 334556788888999999999988877432 345567899
Q ss_pred HHHHHHHCCCeEe
Q 010832 282 VIDELSKQGLVEE 294 (499)
Q Consensus 282 ~i~~L~~~g~~y~ 294 (499)
++.+|.++|++|+
T Consensus 225 ~f~~L~ekGlIYr 237 (1205)
T PTZ00427 225 VFSELYKNNYVYK 237 (1205)
T ss_pred HHHHHHHCCCEEe
Confidence 9999999999995
No 92
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=99.01 E-value=1.7e-09 Score=124.89 Aligned_cols=131 Identities=15% Similarity=0.128 Sum_probs=98.1
Q ss_pred CceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHH
Q 010832 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (499)
Q Consensus 127 ~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l 206 (499)
+++.++.-.-||+||.|||||++|.++.|+++|+.++.||+|.+....+-+|.++..-+... ... .+....+
T Consensus 53 ~~~f~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pGwD~hGlPiE~~vek~---~~~----~~~~~~~- 124 (961)
T PRK13804 53 RPKFVLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGLPIEWKIEEK---YRA----KGKNKDE- 124 (961)
T ss_pred CCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCCCcCCCCcHHHHHHHHh---hhh----cCCChHh-
Confidence 45688889999999999999999999999999999999999999999999999988544211 100 0000000
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeecc-----ccccCcHHH
Q 010832 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPG 281 (499)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~~e-----s~~~~~v~~ 281 (499)
+ ...+|. +..++++..+.+.+++.+++||+..||..+ ..|...+..
T Consensus 125 ----------~-~~~~f~------------------~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~~~~ 175 (961)
T PRK13804 125 ----------V-PVAEFR------------------KECREYALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEARIAR 175 (961)
T ss_pred ----------C-CHHHHH------------------HHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHH
Confidence 0 001222 223456777888999999999999998543 245567899
Q ss_pred HHHHHHHCCCeEe
Q 010832 282 VIDELSKQGLVEE 294 (499)
Q Consensus 282 ~i~~L~~~g~~y~ 294 (499)
++.+|.++|++|+
T Consensus 176 ~F~~l~~kGliyr 188 (961)
T PRK13804 176 EFGKFAAKGQLYR 188 (961)
T ss_pred HHHHHHHCCCEEe
Confidence 9999999999995
No 93
>PLN02882 aminoacyl-tRNA ligase
Probab=99.00 E-value=4.4e-09 Score=123.15 Aligned_cols=132 Identities=17% Similarity=0.154 Sum_probs=99.9
Q ss_pred CceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHH
Q 010832 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (499)
Q Consensus 127 ~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l 206 (499)
+++.++.-.-||+||++||||+++.++.|+++|+.++.||+|.+....+.+|.++...++.. .+- ...+.+.++
T Consensus 37 ~~~f~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vek~---lgi---~~~~~i~~~ 110 (1159)
T PLN02882 37 LPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGLPVEYEIDKK---LGI---KRRDDVLKM 110 (1159)
T ss_pred CCCEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccCCCCcHHHHHHHHH---cCC---CCccchhhc
Confidence 45699999999999999999999999999999999999999999999999999988665321 110 001111110
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeecc-----ccccCcHHH
Q 010832 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPG 281 (499)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~~e-----s~~~~~v~~ 281 (499)
- -.+|. +..++++..+...+++.+++||+..||..+ ..|...+..
T Consensus 111 ---g---------~~~f~------------------~~c~~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~ 160 (1159)
T PLN02882 111 ---G---------IDKYN------------------EECRSIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWW 160 (1159)
T ss_pred ---C---------HHHHH------------------HHHHHHHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHH
Confidence 0 01122 334567888889999999999998877432 345567899
Q ss_pred HHHHHHHCCCeEe
Q 010832 282 VIDELSKQGLVEE 294 (499)
Q Consensus 282 ~i~~L~~~g~~y~ 294 (499)
++.+|.++|++|+
T Consensus 161 ~f~~l~~kGliyr 173 (1159)
T PLN02882 161 VFKQLFEKGLVYK 173 (1159)
T ss_pred HHHHHHHCCCEEe
Confidence 9999999999996
No 94
>PLN02959 aminoacyl-tRNA ligase
Probab=98.91 E-value=8.9e-09 Score=120.16 Aligned_cols=168 Identities=15% Similarity=0.136 Sum_probs=104.6
Q ss_pred CceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHH---hhCCCCCccc-cch
Q 010832 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLF---EKFPNSEDAN-ETA 202 (499)
Q Consensus 127 ~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~---~~~~~~~~~~-~~~ 202 (499)
..+.+|.+.-|++||+|||||++|.++.|+++|+.|+.|++|.+....+-.|.+|...++.+. +.++.....+ .+.
T Consensus 44 ~~kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vlfp~G~d~tGlPIe~~aek~~~ei~~~g~~~~~~~~~~ 123 (1084)
T PLN02959 44 GEKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLRGANVLLPFAFHCTGMPIKASADKLAREIQQYGNPPVFPEEDE 123 (1084)
T ss_pred CCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCccCCCCCcCCCCccHHHHHHHHHHHHHHcCCCcccccccc
Confidence 366899999999999999999999999999999999999999999999999999998876542 2233110000 000
Q ss_pred HHHHHHHHHHH--hcccCCChHHHHHHHHHHHHhcc-----------CCh-HHHHHH---HHHHHHHHHHHHHHHHHcCC
Q 010832 203 IGELQEFYRRS--KNRFDSDPAFKERAQQAVVRLQS-----------GEP-KYHEAW---AQICEISRKEFDKVYKRLRV 265 (499)
Q Consensus 203 i~~l~~~y~~~--~~~~~~~~~~~~~a~~~~~~~e~-----------gd~-~~~~~w---~~~~~~~~~~~~~~~~~LgI 265 (499)
-.+-...-... ...-....+|.+.+++...+... |-| +.+..+ ..+++.+-..+++++++||+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~k~~~k~~~~~~~~~~~~~~~~~~~~i~~f~dp~~~~~yF~~~~~~~~k~lG~ 203 (1084)
T PLN02959 124 DEAAAVAAAKAEAEAAAAPPDKFKGKKSKAVAKSGTQKYQWEIMRSFGLPDSEIAKFQDPYHWLSYFPPLAKEDLKAFGL 203 (1084)
T ss_pred cccccccccccccccccccHHHHHHHHHHHHHHhCCchHHHHHHhhcCCchhhhhhccCHHHHHHhccHHHHHHHHHhCc
Confidence 00000000000 00000112344444443322110 101 111111 12345555778999999999
Q ss_pred eeeeecc-------ccccCcHHHHHHHHHHCCCeEe
Q 010832 266 DLEEKGE-------SFYNPYIPGVIDELSKQGLVEE 294 (499)
Q Consensus 266 ~fd~~~e-------s~~~~~v~~~i~~L~~~g~~y~ 294 (499)
..||..+ ..|...+...+.+|.++|++|.
T Consensus 204 ~iDW~r~f~T~d~np~y~~~v~wqf~~L~ekG~I~~ 239 (1084)
T PLN02959 204 GCDWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIVK 239 (1084)
T ss_pred eEeCCCCcCCCCCChhHHHHHHHHHHHHHHCCCEEe
Confidence 9998543 1245568999999999999995
No 95
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=2.8e-09 Score=113.34 Aligned_cols=115 Identities=22% Similarity=0.315 Sum_probs=88.2
Q ss_pred CCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHH
Q 010832 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (499)
Q Consensus 126 ~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~ 205 (499)
.++++++ .--|.|.|.|||||.|-+.|.|+|||+.|.+||+|+.-+..+-+|.+...-|.
T Consensus 56 sk~KYiL-sMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPAENAAi------------------- 115 (876)
T KOG0435|consen 56 SKKKYIL-SMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPAENAAI------------------- 115 (876)
T ss_pred CCCceEE-EecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCchhhHHH-------------------
Confidence 3445665 55699999999999999999999999999999999999998888875432210
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeecc-cc----ccCcHH
Q 010832 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-SF----YNPYIP 280 (499)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~~e-s~----~~~~v~ 280 (499)
++ .. +| +.| ....++.+++.+.+||+.|||..| |- |-.-.+
T Consensus 116 ---------er-gv------------------~P---~sW---T~~NI~~Mk~Ql~~lg~~FDWdrEiSTC~PdYYKWTQ 161 (876)
T KOG0435|consen 116 ---------ER-GV------------------HP---ASW---TINNIAKMKQQLKSLGISFDWDREISTCEPDYYKWTQ 161 (876)
T ss_pred ---------hc-CC------------------Cc---hhh---hHHHHHHHHHHHHHcCcccccccccccCCcchhHHHH
Confidence 00 01 11 234 345567889999999999999766 43 334578
Q ss_pred HHHHHHHHCCCeEe
Q 010832 281 GVIDELSKQGLVEE 294 (499)
Q Consensus 281 ~~i~~L~~~g~~y~ 294 (499)
.++-+|.++|++|.
T Consensus 162 wiFlkLfe~GLAYq 175 (876)
T KOG0435|consen 162 WIFLKLFEKGLAYQ 175 (876)
T ss_pred HHHHHHHHhhhhhc
Confidence 89999999999996
No 96
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=98.61 E-value=1.2e-07 Score=109.65 Aligned_cols=92 Identities=14% Similarity=0.242 Sum_probs=71.1
Q ss_pred cCCCeEEEEecCCccc-cHHHHHHHHH-HcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccHHHHHHHHHHHH
Q 010832 336 EKAEWIIYVTDVGQQL-HFDMVFSAAK-RAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRS 413 (499)
Q Consensus 336 ~~~d~~i~V~g~~q~~-hf~~~~~~~~-~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~dll~e~~~~a 413 (499)
+.+| +++.|.||.. -|......+. ..|.. |+..-+.| |+|+..+|+|||||+||+|.+.+++++
T Consensus 582 ~PaD--~~~eG~Di~rgWF~s~ll~s~~~~~~~----P~k~V~~H---G~vld~~G~KMSKSlGNvIdP~~ii~~----- 647 (961)
T PRK13804 582 WPAD--LYLEGSDQHRGWFNSSLLESCGTRGRA----PYKAVLTH---GFTLDEKGEKMSKSLGNTVSPQDVIKQ----- 647 (961)
T ss_pred CCce--EEEEEcccccHHHHHHHHHHHHhcCCC----ChhhEEEe---ccEECCCCCCccCCCCCcCCHHHHHHh-----
Confidence 4454 6789999864 4555433222 22432 45566777 789878999999999999999999887
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhc
Q 010832 414 KAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLN 465 (499)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~ 465 (499)
+|++++||++++..+.++++|+++.+.+
T Consensus 648 ------------------------yGaD~lRl~lls~~~~~D~~fs~~~l~~ 675 (961)
T PRK13804 648 ------------------------SGADILRLWVASVDYSDDQRIGKEILKQ 675 (961)
T ss_pred ------------------------cCHHHHHHHHHhCCCCCCcccCHHHHHH
Confidence 6999999999999999999999987644
No 97
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=98.59 E-value=1.8e-07 Score=107.87 Aligned_cols=123 Identities=24% Similarity=0.341 Sum_probs=87.6
Q ss_pred CccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHHHHHHHHHhcccCCChH
Q 010832 143 MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPA 222 (499)
Q Consensus 143 lHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~ 222 (499)
|||||+|+.++.|+++|+.|+.||+|.+....+-.|.++...+..+.. .+.+.. +.++.. +.-.+
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~--------~~~~~~---~~~~~~---~gi~~- 65 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIAR--------GDPETI---ELYKSL---YGIPE- 65 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhc--------cchhHH---HHHHHH---cCCCH-
Confidence 799999999999999999999999999999999999999876643311 111111 111110 01110
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeecc-----ccccCcHHHHHHHHHHCCCeEe
Q 010832 223 FKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPGVIDELSKQGLVEE 294 (499)
Q Consensus 223 ~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~~e-----s~~~~~v~~~i~~L~~~g~~y~ 294 (499)
+.+.++ +++ +++++.+...+++++++||+.+||..+ ..|...+..++.+|.++|++|.
T Consensus 66 ------~~i~~f--~~~------~~~~~~~~~~~~~~~~~lG~~~DW~r~y~T~dp~y~~~v~w~F~~L~ekGliyr 128 (897)
T PRK12300 66 ------EELEKF--KDP------EYIVEYFSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVK 128 (897)
T ss_pred ------HHHHHh--cCH------HHHHHHhHHHHHHHHHHhCcEEeCCCCeECCChhHHHHHHHHHHHHHHCCCEec
Confidence 111111 122 356888999999999999999998544 2455678999999999999984
No 98
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=98.53 E-value=1.8e-07 Score=108.82 Aligned_cols=88 Identities=20% Similarity=0.310 Sum_probs=65.9
Q ss_pred EEEecCCccc-cHHHHHHHH-HHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccHHHHHHHHHHHHHHHHHH
Q 010832 342 IYVTDVGQQL-HFDMVFSAA-KRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIE 419 (499)
Q Consensus 342 i~V~g~~q~~-hf~~~~~~~-~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~dll~e~~~~a~~~~~~ 419 (499)
+++.|.||.. .|..+..+. ...|.. |+...+.| |+|+..+|+|||||+||+|++.|++++
T Consensus 548 ~~~~G~Di~r~Wf~~l~~~~~~~~~~~----pfk~v~~h---G~Vld~~G~KMSKSlGNvIdP~dli~~----------- 609 (975)
T PRK06039 548 FIVEGIDQTRGWFYTLLALSTALFDRP----PYKNVLVH---GHVLDEDGQKMSKSLGNYVDPFEVFDK----------- 609 (975)
T ss_pred EEEechhhHhhHHHHHHHHHHHhcCCC----cccEEEEe---eeEECCCCCCcCCCCCCcCCHHHHHHH-----------
Confidence 5678998854 233332221 223432 45445544 889988999999999999999999988
Q ss_pred hcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCC-CCCccccHHHHhc
Q 010832 420 RGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-LTNYTFSFDQMLN 465 (499)
Q Consensus 420 ~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~-~~~~~Fd~~~~~~ 465 (499)
+|++++||++++..+ .++++|+++.+..
T Consensus 610 ------------------yGaDalR~~lls~~~~~~D~~fs~~~~~~ 638 (975)
T PRK06039 610 ------------------YGADALRWYLLSSSAPWEDLRFSEDGVRE 638 (975)
T ss_pred ------------------hChHHHHHHHHhCCCCCCCceechhHHHH
Confidence 599999999999885 9999999999433
No 99
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=98.48 E-value=5.7e-07 Score=104.13 Aligned_cols=89 Identities=12% Similarity=0.134 Sum_probs=65.4
Q ss_pred EEEecCCccc-cHHHHHHHH-HHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccHHHHHHHHHHHHHHHHHH
Q 010832 342 IYVTDVGQQL-HFDMVFSAA-KRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIE 419 (499)
Q Consensus 342 i~V~g~~q~~-hf~~~~~~~-~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~dll~e~~~~a~~~~~~ 419 (499)
+++.|.|+-. |. .+.++ ..+.+.. .++...+.|. |+|+. +|+|||||+||+|++.|++++
T Consensus 576 ~~~~GkDii~~H~--~~~i~~~~a~~~~--~~~Pk~i~~~--G~vl~-~G~KMSKSlGNvI~p~d~i~~----------- 637 (938)
T TIGR00395 576 WRISGKDLIPNHL--TFYIFHHVAIFPE--KFWPRGIVVN--GYVML-EGKKMSKSKGNVLTLEQAVEK----------- 637 (938)
T ss_pred EEEEeeccccchH--HHHHHHHHHcCCc--cccCcEEEEe--ceEEe-CCccccCcCCCCCCHHHHHHH-----------
Confidence 6678888742 22 11222 2222221 1355678877 67884 799999999999999999988
Q ss_pred hcCCCCCCHHHHHHHHHHhhhhHHHHHhhcC-CCCCCccccHHHHhcc
Q 010832 420 RGKDKEWTEEELEQTAEAVGYGAAKYFDLKN-NRLTNYTFSFDQMLND 466 (499)
Q Consensus 420 ~~~~~~~~~~~~~~~a~~vg~~airy~~L~~-~~~~~~~Fd~~~~~~~ 466 (499)
+|++++||++++. ++.++++|+++.+.+.
T Consensus 638 ------------------yGaDalRl~Ll~~~~~~~D~~fs~~~~~~~ 667 (938)
T TIGR00395 638 ------------------FGADVARLYIADAAETVQDADWKESEVEGT 667 (938)
T ss_pred ------------------cChHHHHHHHHhcCCCCCCCCcCHHHHHHH
Confidence 6999999999987 7899999999987654
No 100
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=98.39 E-value=1.2e-06 Score=100.94 Aligned_cols=88 Identities=14% Similarity=0.073 Sum_probs=63.4
Q ss_pred EEEecCCccc-c--HHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccHHHHHHHHHHHHHHHHH
Q 010832 342 IYVTDVGQQL-H--FDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLI 418 (499)
Q Consensus 342 i~V~g~~q~~-h--f~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~dll~e~~~~a~~~~~ 418 (499)
+++.|.||-. | |-.+.. ....+-. ++...+.+. |+|+. +|+|||||+||+|++.|++++
T Consensus 533 ~~~~GkDii~~Hl~~~~~~~-~a~~~~~----~~Pk~v~~h--G~vl~-~G~KMSKS~GNvVdp~eii~~---------- 594 (897)
T PRK12300 533 WRHSGKDLIPNHLTFFIFNH-VAIFPEE----KWPRGIVVN--GFVLL-EGKKMSKSKGNVIPLRKAIEE---------- 594 (897)
T ss_pred EEEeeeccCccHHHHHHHHH-HHhcCCC----ccCcEEEEc--ceEEE-CCccccCcCCCCCCHHHHHHH----------
Confidence 6688998832 2 221111 1112221 344466655 77886 799999999999999999987
Q ss_pred HhcCCCCCCHHHHHHHHHHhhhhHHHHHhhc-CCCCCCccccHHHHhcc
Q 010832 419 ERGKDKEWTEEELEQTAEAVGYGAAKYFDLK-NNRLTNYTFSFDQMLND 466 (499)
Q Consensus 419 ~~~~~~~~~~~~~~~~a~~vg~~airy~~L~-~~~~~~~~Fd~~~~~~~ 466 (499)
+|++++||++++ ..+..+.+|+++.+...
T Consensus 595 -------------------yGaDalRl~L~~~~~~~~D~~fs~~~v~~~ 624 (897)
T PRK12300 595 -------------------YGADVVRLYLTSSAELLQDADWREKEVESV 624 (897)
T ss_pred -------------------cChHHHHHHHHhCCCCCCCCccCHHHHHHH
Confidence 699999999998 47889999999987543
No 101
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=98.33 E-value=9.7e-07 Score=101.04 Aligned_cols=92 Identities=14% Similarity=0.293 Sum_probs=68.9
Q ss_pred EEEecCCcc-cc--H-HHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEec----CCCC-----------------------
Q 010832 342 IYVTDVGQQ-LH--F-DMVFSAAKRAGWLSADDSTYPKASHVGFGLVLG----EDGK----------------------- 390 (499)
Q Consensus 342 i~V~g~~q~-~h--f-~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~----~~g~----------------------- 390 (499)
+|+-|.||. .| + .-...++..+|+.+...|+..-+.| |||++ ++|+
T Consensus 523 ~yi~G~dhailHLlyaRf~~~~l~~~~~~~~~~Pfk~l~~~---G~Vl~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 599 (842)
T TIGR00396 523 LYIGGAEHAILHLLYARFWHKFLYDIGYVSTKEPFKKLINQ---GMVLGFYYPPNGKSPPDELTERDEKAKDKSGGELVV 599 (842)
T ss_pred EeeccHHHHHHHHHHHHHHHHHHHhccccCCCccHHHHhcc---ceEEeeeecCCCCccChhhhccccccccccCCcccc
Confidence 678999983 33 2 2233455555654322355555555 88998 7888
Q ss_pred ----ccccccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhc-CCCCCCccccHHHHhc
Q 010832 391 ----RLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLK-NNRLTNYTFSFDQMLN 465 (499)
Q Consensus 391 ----KMSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~-~~~~~~~~Fd~~~~~~ 465 (499)
|||||+||+|++.|++++ +|++++||++++ .+++.+++|+.+.+..
T Consensus 600 ~~~~KMSKS~GN~v~p~~ii~~-----------------------------ygaDalRl~~l~~~~~~~d~~~~~~~l~~ 650 (842)
T TIGR00396 600 VGYEKMSKSKGNGIDPQEIVKK-----------------------------HGADALRLYIMFMGPIAASLEWNDSGLEG 650 (842)
T ss_pred cchhhhhhcCCCcCCHHHHHHH-----------------------------cCchHHHHHHHhcCCcCCCCccCHHHHHH
Confidence 999999999999999998 599999999995 5789999999988743
No 102
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=98.31 E-value=1.2e-06 Score=102.80 Aligned_cols=87 Identities=17% Similarity=0.209 Sum_probs=68.1
Q ss_pred EEEecCCcc-ccHHHHHHHH-HHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccHHHHHHHHHHHHHHHHHH
Q 010832 342 IYVTDVGQQ-LHFDMVFSAA-KRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIE 419 (499)
Q Consensus 342 i~V~g~~q~-~hf~~~~~~~-~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~dll~e~~~~a~~~~~~ 419 (499)
+++.|.||. .+|..+.... ...|-. |+..-+.| |+|+.++|+|||||+||+|...+++++
T Consensus 676 ~i~eG~Dq~rgWf~s~l~~s~~l~~~~----PfK~VlvH---G~Vld~dG~KMSKSlGNvIDP~evI~k----------- 737 (1205)
T PTZ00427 676 FIAEGLDQTRGWFYTLLVISTLLFDKA----PFKNLICN---GLVLASDGKKMSKRLKNYPDPLYILDK----------- 737 (1205)
T ss_pred EEEEecchhccHHHHHHHHHHHhcCCC----CcceeEEc---cEEEcCCCCCcccCCCCCCCHHHHHHh-----------
Confidence 557888885 4777664433 344543 66666666 889988999999999999999999887
Q ss_pred hcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCC--CCCccccHHHHh
Q 010832 420 RGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR--LTNYTFSFDQML 464 (499)
Q Consensus 420 ~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~--~~~~~Fd~~~~~ 464 (499)
+|+||+||++++... ..++.|+++.+.
T Consensus 738 ------------------YGADaLR~~Lls~~~~~~~Dl~Fse~~v~ 766 (1205)
T PTZ00427 738 ------------------YGADSLRLYLINSVAVRAENLKFQEKGVN 766 (1205)
T ss_pred ------------------cCCcHHHHHHHhcCCCCCcccccCHHHHH
Confidence 699999999998643 588999988764
No 103
>PLN02882 aminoacyl-tRNA ligase
Probab=98.29 E-value=1.6e-06 Score=101.95 Aligned_cols=88 Identities=16% Similarity=0.209 Sum_probs=64.4
Q ss_pred EEEecCCccc-cHHHHHHHH-HHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccHHHHHHHHHHHHHHHHHH
Q 010832 342 IYVTDVGQQL-HFDMVFSAA-KRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIE 419 (499)
Q Consensus 342 i~V~g~~q~~-hf~~~~~~~-~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~dll~e~~~~a~~~~~~ 419 (499)
+++.|.||.. .|..+..+. ...|.. |+. .+.++ |+|+.++|+|||||+||+|.+.+++++
T Consensus 570 ~i~eG~Dq~RgWf~~ll~~s~~l~~~~----pfk-~Vivh--G~vlde~G~KMSKSlGNvIdP~evi~~----------- 631 (1159)
T PLN02882 570 FVAEGLDQTRGWFYTLMVLSTALFDKP----AFK-NLICN--GLVLAEDGKKMSKSLKNYPDPNEVIDK----------- 631 (1159)
T ss_pred EEEEecchhhhHHHHHHHHHHHhcCCC----Ccc-eeEEc--cEEECCCCCCcccCCCCCCCHHHHHHH-----------
Confidence 5568888754 444333222 233553 443 44433 789988999999999999999999987
Q ss_pred hcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCC--CCCccccHHHHhc
Q 010832 420 RGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR--LTNYTFSFDQMLN 465 (499)
Q Consensus 420 ~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~--~~~~~Fd~~~~~~ 465 (499)
+|++++||++++..+ ..++.|+++.+.+
T Consensus 632 ------------------YGADaLR~~Ll~s~~~~~~d~~fs~~~v~~ 661 (1159)
T PLN02882 632 ------------------YGADALRLYLINSPVVRAEPLRFKEEGVFG 661 (1159)
T ss_pred ------------------hCcHHHHHHHHhCCcccCcCcccCHHHHHH
Confidence 699999999997754 5778999888664
No 104
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=6.7e-06 Score=83.77 Aligned_cols=117 Identities=17% Similarity=0.314 Sum_probs=91.9
Q ss_pred CCCceEEEEecCCCCCCCCccchhhHhH-HHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchH
Q 010832 125 LRVKKAVVDFSSPNIAKEMHVGHLRSTI-IGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAI 203 (499)
Q Consensus 125 ~~~~~v~Ve~~SpNp~~plHiGH~R~~i-iGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i 203 (499)
.+..+++|..+-|.++...|+|+.=..+ .+|+.||+.+..|++..+....+.+|+....-+
T Consensus 11 ~n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetka------------------ 72 (567)
T KOG1247|consen 11 PNERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKA------------------ 72 (567)
T ss_pred CCccceeeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHHH------------------
Confidence 4567899999999999999999986554 489999999999999999999888887443211
Q ss_pred HHHHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeeccc---cccCcHH
Q 010832 204 GELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGES---FYNPYIP 280 (499)
Q Consensus 204 ~~l~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~~es---~~~~~v~ 280 (499)
+|+|- .-+++++.+...++..|+-++|.||+++.. ...+..+
T Consensus 73 ------------------------------leeg~-----tP~elcdKyh~ihk~vy~Wf~IdfD~fgrtTT~~qT~i~Q 117 (567)
T KOG1247|consen 73 ------------------------------LEEGL-----TPQELCDKYHGIHKVVYDWFKIDFDEFGRTTTKTQTEICQ 117 (567)
T ss_pred ------------------------------HHccC-----CHHHHHHhcchhHHHHHHhhcccccccCcccCcchhHHHH
Confidence 11110 014678888888999999999999988752 2346788
Q ss_pred HHHHHHHHCCCeEe
Q 010832 281 GVIDELSKQGLVEE 294 (499)
Q Consensus 281 ~~i~~L~~~g~~y~ 294 (499)
.++.+|.++|++-+
T Consensus 118 ~iF~kl~~ng~~se 131 (567)
T KOG1247|consen 118 DIFSKLYDNGYLSE 131 (567)
T ss_pred HHhhchhhcCCccc
Confidence 99999999998765
No 105
>PLN02381 valyl-tRNA synthetase
Probab=98.12 E-value=4.3e-06 Score=97.72 Aligned_cols=112 Identities=10% Similarity=0.137 Sum_probs=69.7
Q ss_pred EEEecCCcc-ccHHHHHHHHH-HcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccHHHHHHHHH-HHHHHHHH
Q 010832 342 IYVTDVGQQ-LHFDMVFSAAK-RAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAK-NRSKAVLI 418 (499)
Q Consensus 342 i~V~g~~q~-~hf~~~~~~~~-~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~dll~e~~-~~a~~~~~ 418 (499)
+++.|.||. .-|.++....- ..|-. |+..-+.| |||++.+|+|||||+||+|.+.|+++... +.....+.
T Consensus 611 ~~~~G~Dii~~W~~rmi~~~~~~~~~~----PFk~v~~h---G~V~D~~G~KMSKS~GNvIdP~~vi~~~~~~~l~~~~~ 683 (1066)
T PLN02381 611 VLETGHDILFFWVARMVMMGMQLGGDV----PFRKVYLH---PMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLE 683 (1066)
T ss_pred eeeecchhhhhHHHHHHHHHHHhCCCC----chHHheec---ceEECCCCCCCCCCCCCCCCHHHHHhhcchhhHHHhhh
Confidence 457887764 34444433222 23332 67667777 89999999999999999999999998531 11111111
Q ss_pred HhcCCCCCCHHHHHHH-----------HHHhhhhHHHHHhhcCC-CCCCccccHHHHh
Q 010832 419 ERGKDKEWTEEELEQT-----------AEAVGYGAAKYFDLKNN-RLTNYTFSFDQML 464 (499)
Q Consensus 419 ~~~~~~~~~~~~~~~~-----------a~~vg~~airy~~L~~~-~~~~~~Fd~~~~~ 464 (499)
. ..+.+.|+..+ ..++|.||+||++++.. ...++.||++.+.
T Consensus 684 ~----~~~~~~e~~~~~~~~~~~~p~gi~~yGADalR~~l~~~~~~~~di~~~~~~v~ 737 (1066)
T PLN02381 684 E----GNLDPKELVVAKEGQKKDFPNGIAECGTDALRFALVSYTAQSDKINLDILRVV 737 (1066)
T ss_pred c----cccchhhhhhHhhhccccCCCCccccChHHHHHHHHcCCccccccCccHHHHH
Confidence 0 11122222111 12479999999999766 4578899988654
No 106
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.06 E-value=3.7e-06 Score=94.30 Aligned_cols=90 Identities=18% Similarity=0.315 Sum_probs=65.0
Q ss_pred EEEecCCc---cccHHH-HHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccHHHHHHHHHHHHHHHH
Q 010832 342 IYVTDVGQ---QLHFDM-VFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVL 417 (499)
Q Consensus 342 i~V~g~~q---~~hf~~-~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~dll~e~~~~a~~~~ 417 (499)
+||-|.+| |+-|-+ ...++.-.|+-|...|+ .++.. .|||++.+|+|||||+||+|++++++++
T Consensus 529 ~yigG~ehavlHLly~rF~Hkal~d~g~~p~~epf-~~L~~--qGmVl~~~g~KMSKSKgN~v~p~~~i~~--------- 596 (814)
T COG0495 529 LYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPF-KKLIT--QGMVLGEEGEKMSKSKGNVVDPEEAVEK--------- 596 (814)
T ss_pred eeecchhHHHHHHHHHHHHHHHhcccCcCCCccch-hhhhc--cceEEecCCCccccccCCCCCHHHHHHH---------
Confidence 67889987 333433 33566666765432233 23433 3899976899999999999999999998
Q ss_pred HHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCC-CCCccccHHHH
Q 010832 418 IERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-LTNYTFSFDQM 463 (499)
Q Consensus 418 ~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~-~~~~~Fd~~~~ 463 (499)
+|++++|.|.+...+ .++++|+.+.+
T Consensus 597 --------------------yGADt~Rl~~m~~ap~~~d~~W~e~gv 623 (814)
T COG0495 597 --------------------YGADTVRLYIMFAAPPEQDLEWSESGV 623 (814)
T ss_pred --------------------hCchHHHHHHHhhCChhhCCCCChhhh
Confidence 699999999988776 67777766654
No 107
>PLN02959 aminoacyl-tRNA ligase
Probab=98.04 E-value=9.3e-06 Score=95.22 Aligned_cols=86 Identities=9% Similarity=0.117 Sum_probs=60.4
Q ss_pred EEEecCCcc-ccHHHHHHHHH-HcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccHHHHHHHHHHHHHHHHHH
Q 010832 342 IYVTDVGQQ-LHFDMVFSAAK-RAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIE 419 (499)
Q Consensus 342 i~V~g~~q~-~hf~~~~~~~~-~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~dll~e~~~~a~~~~~~ 419 (499)
+++.|.||. .||........ ..|- .|+...+... |+|+ .+|+|||||+||+|++.|++++
T Consensus 674 l~~sG~Dii~~wl~~~l~~~~al~~~----~P~p~~v~v~--G~V~-~~G~KMSKSkGNvI~p~diI~k----------- 735 (1084)
T PLN02959 674 LRVSGKDLIQNHLTFAIYNHTAIWAE----EHWPRGFRCN--GHLM-LNSEKMSKSTGNFLTLRQAIEE----------- 735 (1084)
T ss_pred EEEecccHHHHHHHHHHHHHHHhcCC----CCCCceEEEc--cEEe-cCCcCccccCCCcCCHHHHHHH-----------
Confidence 567788763 34432211111 2232 2554445544 7788 7899999999999999999987
Q ss_pred hcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCC-CCCCccccHHHH
Q 010832 420 RGKDKEWTEEELEQTAEAVGYGAAKYFDLKNN-RLTNYTFSFDQM 463 (499)
Q Consensus 420 ~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~-~~~~~~Fd~~~~ 463 (499)
+|++++||++++.. ...+.+|+++.+
T Consensus 736 ------------------yGADalRl~la~~~~~~~D~nF~~k~~ 762 (1084)
T PLN02959 736 ------------------FSADATRFALADAGDGVDDANFVFETA 762 (1084)
T ss_pred ------------------hCchHHHHHHhhcCCccCCCCccHHHH
Confidence 69999999999874 567899998744
No 108
>PLN02563 aminoacyl-tRNA ligase
Probab=98.03 E-value=4.8e-06 Score=96.03 Aligned_cols=90 Identities=20% Similarity=0.329 Sum_probs=64.9
Q ss_pred EEEecCCcc-cc---HHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEec---------CCCC------------------
Q 010832 342 IYVTDVGQQ-LH---FDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLG---------EDGK------------------ 390 (499)
Q Consensus 342 i~V~g~~q~-~h---f~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~---------~~g~------------------ 390 (499)
+||-|.||. +| ..-++..+..+|+.....|+..-+.| |||++ ++|+
T Consensus 619 ~yigG~dhailHLlY~Rfw~~~l~~~g~~~~~ePfk~ll~q---GmVl~~~~~~~~~d~~G~~~~~~~~~~~~~~~~~~~ 695 (963)
T PLN02563 619 LYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFQCLVNQ---GMILGEVEYTAFKDSDGEYVSADTADRLGELQQEKI 695 (963)
T ss_pred EeeccHHHHhhHhHHHHHHHHHHHHhhccCCcccHHHHhcc---ceeecCccccceecCCCcCccccccccccccccccc
Confidence 678999984 33 34455666666754222255545544 88986 5666
Q ss_pred ---------------------------ccccccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHH
Q 010832 391 ---------------------------RLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAA 443 (499)
Q Consensus 391 ---------------------------KMSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~ai 443 (499)
|||||+||+|.+.+++++ +|+|++
T Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~eKMSKSKGNvVdP~eiI~k-----------------------------YGADaL 746 (963)
T PLN02563 696 PEEKVIKSGDSFVLKDDPSIRLIARAHKMSKSRGNVVNPDDVVSE-----------------------------YGADSL 746 (963)
T ss_pred ccccccccccccccccCCcccccccccccccccCCcCCHHHHHHH-----------------------------cCcHHH
Confidence 999999999999999998 699999
Q ss_pred HHHhhcCCC-CCCccccHHHH
Q 010832 444 KYFDLKNNR-LTNYTFSFDQM 463 (499)
Q Consensus 444 ry~~L~~~~-~~~~~Fd~~~~ 463 (499)
||++++..+ ..+..|+.+.+
T Consensus 747 Rl~ll~~ap~~dd~~w~~~~V 767 (963)
T PLN02563 747 RLYEMFMGPLRDSKTWSTSGV 767 (963)
T ss_pred HHHHHhCCCcccccccCHHHH
Confidence 999997665 55667876654
No 109
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=97.98 E-value=7.4e-06 Score=95.75 Aligned_cols=113 Identities=11% Similarity=0.151 Sum_probs=65.8
Q ss_pred EEEecCCccc-cHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccHHHHHHHHH-HHHHHHHHH
Q 010832 342 IYVTDVGQQL-HFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAK-NRSKAVLIE 419 (499)
Q Consensus 342 i~V~g~~q~~-hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~dll~e~~-~~a~~~~~~ 419 (499)
+++.|.|+.. -|.++.. ..+++.+ ..|+..-+.| |+|.+.+|+|||||+||+|.+.++++... +.+...+.
T Consensus 541 ~~~~G~Dii~~W~arm~~--~~~~~~~-~~Pfk~v~~H---G~v~d~~G~KMSKSlGNvIdP~~ii~~~~~~~l~~~~~- 613 (995)
T PTZ00419 541 LLETGSDILFFWVARMVM--MSLHLTD-KLPFKTVFLH---AMVRDSQGEKMSKSKGNVIDPLEVIEGISLQDLNQKLY- 613 (995)
T ss_pred EEEechhHHhHHHHHHHH--HHHHhcC-CCChHHHhcc---ceEECCCCCCcccCCCCcCChHHHhcccchhhHHHhhh-
Confidence 6678877632 2223322 2222221 0144455666 78998899999999999999999988321 00000000
Q ss_pred hcCCCCCCHHHHHHH-----------HHHhhhhHHHHHhhcCC-CCCCccccHHHHh
Q 010832 420 RGKDKEWTEEELEQT-----------AEAVGYGAAKYFDLKNN-RLTNYTFSFDQML 464 (499)
Q Consensus 420 ~~~~~~~~~~~~~~~-----------a~~vg~~airy~~L~~~-~~~~~~Fd~~~~~ 464 (499)
...+++.|+... ..++|.||+||++++.. ...++.||.+.+.
T Consensus 614 ---~~~~~~~e~~~~~~~~~~~f~~gi~~yGaDalR~~l~~~~~~~~Di~~~~~~v~ 667 (995)
T PTZ00419 614 ---EGNLPEKEIKRAIELQKKEFPNGIPECGTDALRFGLLAYTQQGRNINLDINRVV 667 (995)
T ss_pred ---ccccchhhhhhHhhhhhccCCCCCcccCcHHHHHHHHhcCCCCCCccccHHHHH
Confidence 011111111111 12489999999999755 4677999987764
No 110
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=97.93 E-value=1.8e-05 Score=90.41 Aligned_cols=87 Identities=18% Similarity=0.312 Sum_probs=62.5
Q ss_pred EEEecCCcc-ccH--HHH-HHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccHHHHHHHHHHHHHHHH
Q 010832 342 IYVTDVGQQ-LHF--DMV-FSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVL 417 (499)
Q Consensus 342 i~V~g~~q~-~hf--~~~-~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~dll~e~~~~a~~~~ 417 (499)
+|+-|.||. .|+ .+. ..++..+|+.+...|+ ..+.|. ||| |||||+||+|++.|++++
T Consensus 526 ly~~G~D~~i~hL~y~Rf~~~~l~~~~~~~~~~Pf-k~v~~~--G~v------KMSKS~GN~i~p~~~i~~--------- 587 (805)
T PRK00390 526 QYIGGIEHAVLHLLYARFFTKVLRDLGLVSSDEPF-KKLLTQ--GMV------KMSKSKGNVVDPDDIIEK--------- 587 (805)
T ss_pred EEeccHHHHHHHHHHHHHHHHHHHHhhcccCCcch-hhheec--CcE------EeCCCCCCCCCHHHHHHH---------
Confidence 678898884 332 232 2444555543211244 356666 667 899999999999999987
Q ss_pred HHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhc-CCCCCCccccHHHHhcc
Q 010832 418 IERGKDKEWTEEELEQTAEAVGYGAAKYFDLK-NNRLTNYTFSFDQMLND 466 (499)
Q Consensus 418 ~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~-~~~~~~~~Fd~~~~~~~ 466 (499)
+|++++||++++ .+++++++|+.+.+...
T Consensus 588 --------------------ygaD~lRl~l~~~~~~~~d~~~s~~~l~~~ 617 (805)
T PRK00390 588 --------------------YGADTARLFEMFAGPPEKDLEWSDSGVEGA 617 (805)
T ss_pred --------------------cChHHHHHHHHhcCCccCCcccCHHHHHHH
Confidence 699999999987 58999999999876543
No 111
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.47 E-value=0.00082 Score=70.92 Aligned_cols=31 Identities=16% Similarity=0.134 Sum_probs=25.7
Q ss_pred hhhhHHHHHhhcCCC-CCCccccHHHHhcccC
Q 010832 438 VGYGAAKYFDLKNNR-LTNYTFSFDQMLNDKG 468 (499)
Q Consensus 438 vg~~airy~~L~~~~-~~~~~Fd~~~~~~~~~ 468 (499)
..++++|=|.+++-+ ++-+..+|+++.+++.
T Consensus 469 mtvEgLkqfIl~QG~Sk~v~~meWdkiWAfNK 500 (712)
T KOG1147|consen 469 MTVEGLKQFILAQGPSKNVVTMEWDKIWAFNK 500 (712)
T ss_pred ccHHHHHHHHHHhCCccceeeeehHhhhhhcc
Confidence 568999999999876 5667789999999874
No 112
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=97.46 E-value=0.0021 Score=64.61 Aligned_cols=67 Identities=21% Similarity=0.209 Sum_probs=42.9
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCC--CccccccC-CcccHHH
Q 010832 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRFS-EVVRLVD 404 (499)
Q Consensus 336 ~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g--~KMSkR~G-~~v~l~d 404 (499)
++++.+ .+|.||..|+.--..+++.++..-+..-..+...|....+|.+.+| +|||||.| +.|.|.|
T Consensus 136 ~~~~~v--pvG~DQ~~h~~l~Rdia~r~n~~~~~~~~~P~~l~~~~~~i~~l~g~~~KMSKS~~~~~I~L~d 205 (280)
T cd00806 136 YKACLV--PVGIDQDPHLELTRDIARRFNKLYGEIFPKPAALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTD 205 (280)
T ss_pred ccCCEE--eeccccHHHHHHHHHHHHHhccccccccCCCeeeccCCCccccCCCCCCcccCCCCCCeEEeeC
Confidence 355544 4699999999998899998882100000124444442234544444 59999999 9998876
No 113
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=97.44 E-value=0.00057 Score=72.17 Aligned_cols=59 Identities=17% Similarity=0.095 Sum_probs=43.6
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccHHH
Q 010832 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 404 (499)
Q Consensus 336 ~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~d 404 (499)
++++ +=++|.||..|+..-..+++.+|.. + ....+. -++.+.+|+|||||.||.|.|+|
T Consensus 187 ~~~~--i~~gG~DQ~~ni~~grdla~r~~~~----~--~~~l~~--plL~~~~G~KMsKS~~naI~L~d 245 (408)
T PRK05912 187 YGCD--LQLGGSDQWGNILSGRDLQRRYGGK----P--QFGLTM--PLLTGLDGKKMGKSEGNAVWLDE 245 (408)
T ss_pred CCCC--EEeccHHHHHHHHHHHHHHHHhCCC----C--eEEEec--CCcCCCCCCcccCCCCCceeCCC
Confidence 4555 4458999999999888888888753 1 122233 34677889999999999999987
No 114
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=97.40 E-value=0.0013 Score=67.49 Aligned_cols=67 Identities=18% Similarity=0.231 Sum_probs=42.8
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEe-EEEecCCCCccccccCC-cccHHH
Q 010832 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGF-GLVLGEDGKRLRTRFSE-VVRLVD 404 (499)
Q Consensus 336 ~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~-g~V~~~~g~KMSkR~G~-~v~l~d 404 (499)
+++|.+ .+|.||..|+.--..++..+|..=...-..+...|..+ -.|.+.+|+|||||.++ .|.|.|
T Consensus 138 ~~~d~v--pvG~DQ~~h~elaRdia~r~n~~~~~~f~~P~~l~~~~~~~l~gl~~~KMSKS~~~s~I~L~D 206 (328)
T TIGR00233 138 YQADLV--PVGIDQDQHLELTRDLAERFNKKFKNFFPKPESLISKFFPRLMGLSGKKMSKSDPNSAIFLTD 206 (328)
T ss_pred cCCCee--ecccccHHHHHHHHHHHHHhhhhcCcccCCChhhhccccCCCCCCCCCcCCCCCCCCeEeecC
Confidence 466754 59999999999888899888820000000233344322 12445567899999997 888765
No 115
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.39 E-value=0.0025 Score=63.79 Aligned_cols=64 Identities=16% Similarity=0.026 Sum_probs=45.5
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccHHHHHHH
Q 010832 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDE 408 (499)
Q Consensus 336 ~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~dll~e 408 (499)
.+.+.+ .+|.||..|+.--..+++.++.. + .+.-.+.+ ++.+.+|.|||||.||.+.+..+.+.
T Consensus 152 ~~~~~v--p~G~DQ~~~i~l~rdla~r~n~~----~-~p~~l~~p--~l~~l~G~KMSKS~~~~i~l~~~~ds 215 (273)
T cd00395 152 EGCDIQ--PGGSDQWGNITLGRELARRFNGF----T-IAEGLTIP--LVTKLDGPKFGKSESGPKWLDTEKTS 215 (273)
T ss_pred cCCcEE--EecHHHHHHHHHHHHHHHHhCCC----C-CCeEEeec--cccCCCCCcCCCCCCCCccccccCCC
Confidence 444544 59999999999888888888521 1 23334444 57778899999999999877555443
No 116
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=97.36 E-value=0.00085 Score=70.86 Aligned_cols=59 Identities=14% Similarity=0.082 Sum_probs=44.3
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccHHH
Q 010832 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 404 (499)
Q Consensus 336 ~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~d 404 (499)
++++ +=+.|.||..|+..-..+++.+|.. .+...+. -++.+.+|.|||||.||.|.|+|
T Consensus 185 ~~~~--iq~gG~DQ~~ni~~grdl~~r~~~~------~~~~lt~--PlL~g~dG~KMsKS~~naI~L~d 243 (410)
T PRK13354 185 EDVD--LQIGGTDQWGNILMGRDLQRKLEGE------EQFGLTM--PLLEGADGTKMGKSAGGAIWLDP 243 (410)
T ss_pred CCCC--EEEecHHHHHHHHHHHHHHHHhCCC------CceEecc--CCccCCCCCccCCCCCCceeccC
Confidence 3555 4469999999999888888888863 1222333 34677889999999999998876
No 117
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=97.34 E-value=0.0023 Score=66.57 Aligned_cols=59 Identities=17% Similarity=0.308 Sum_probs=43.5
Q ss_pred EEEecCCccccHHHHHHHHHHc----CCCCCCCCCCCcEEEEEeEEEecCCCCcccccc-CCcccHHHHHHH
Q 010832 342 IYVTDVGQQLHFDMVFSAAKRA----GWLSADDSTYPKASHVGFGLVLGEDGKRLRTRF-SEVVRLVDLLDE 408 (499)
Q Consensus 342 i~V~g~~q~~hf~~~~~~~~~l----G~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~-G~~v~l~dll~e 408 (499)
+-.+|.||..||.--..++..+ |+. .+...|.. ++.+-+|.|||||. ++.|.|.|=-++
T Consensus 206 lvPvG~DQ~~h~~ltRdiA~r~n~~~gf~------~P~~l~~~--~lpgL~G~KMSkS~~~s~I~L~D~p~~ 269 (368)
T PRK12285 206 LVPVGIDQDPHIRLTRDIAERLHGGYGFI------KPSSTYHK--FMPGLTGGKMSSSKPESAIYLTDDPET 269 (368)
T ss_pred EEEeccchHHHHHHHHHHHHHHhhhcCCC------CchhHhhh--cccCCCCCcCCCCCCCCeeeccCCHHH
Confidence 4469999999999888889888 874 23334443 46667789999998 678988763333
No 118
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=97.32 E-value=0.0013 Score=68.64 Aligned_cols=60 Identities=12% Similarity=0.073 Sum_probs=42.4
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecC-CC-CccccccCC-cccHHH
Q 010832 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE-DG-KRLRTRFSE-VVRLVD 404 (499)
Q Consensus 336 ~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~-~g-~KMSkR~G~-~v~l~d 404 (499)
+++|.+ .+|.||..|+.-...++..+|+.+ .+...|. .+|.+- +| +|||||.+| .|.|.|
T Consensus 209 l~adiv--pvG~DQ~~~~~LaRdia~~~~~~~-----~~~~~~~--~~lpgL~dg~~KMSKS~~ns~I~L~D 271 (383)
T PTZ00126 209 LKADIC--QLGMDQRKVNMLAREYCDKKKIKK-----KPIILSH--HMLPGLLEGQEKMSKSDPNSAIFMED 271 (383)
T ss_pred cCCCEE--EeCccHHHHHHHHHHHHHHhCCCC-----Cceeecc--cccccCCCCCCCCCcCCCCCeecCCC
Confidence 467755 489999999987778889998631 2334454 346555 45 699999987 588765
No 119
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=97.24 E-value=0.0013 Score=67.69 Aligned_cols=64 Identities=17% Similarity=0.213 Sum_probs=46.2
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCC--cccccc-CCcccHHHHHHHH
Q 010832 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK--RLRTRF-SEVVRLVDLLDEA 409 (499)
Q Consensus 336 ~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~--KMSkR~-G~~v~l~dll~e~ 409 (499)
+++|.+ .+|.||..|+.--..+++.+++. .+...|. -+|.+-+|. |||||. |+.|.|.|=-++.
T Consensus 167 ~~ad~v--pvG~DQ~~h~~l~Rdia~~~n~~------~p~~l~~--~~l~~L~g~~~KMSKS~p~~~I~L~D~~~~I 233 (329)
T PRK08560 167 LDVDIA--VGGMDQRKIHMLAREVLPKLGYK------KPVCIHT--PLLTGLDGGGIKMSKSKPGSAIFVHDSPEEI 233 (329)
T ss_pred hCCCEE--EechhHHHHHHHHHHhhHhcCCC------CceEEEc--CccCCCCCCCCCCcCCCCCCeecccCCHHHH
Confidence 467755 49999999998888888888873 2333443 356666675 999999 9999987643443
No 120
>PLN02486 aminoacyl-tRNA ligase
Probab=97.18 E-value=0.0022 Score=66.94 Aligned_cols=53 Identities=19% Similarity=0.278 Sum_probs=38.9
Q ss_pred EecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCC--CccccccCC-cccHHH
Q 010832 344 VTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRFSE-VVRLVD 404 (499)
Q Consensus 344 V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g--~KMSkR~G~-~v~l~d 404 (499)
=+|.||+.||.-...++..+|+. .+...|..+ +-+-+| .|||||.+| .|.|.|
T Consensus 224 PvG~DQd~~~~ltRdia~r~~~~------kp~~~~~~~--lp~L~g~~~KMSkS~~nsaI~L~D 279 (383)
T PLN02486 224 PCAIDQDPYFRMTRDVAPRLGYY------KPALIESRF--FPALQGESGKMSASDPNSAIYVTD 279 (383)
T ss_pred ecccchHHHHHHHHHHHHHhCCC------Ccceecccc--ccCCCCCCCcCcCcCCCCeeeccC
Confidence 46999999999888999999873 234455433 433344 599999988 698876
No 121
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.11 E-value=0.0034 Score=68.67 Aligned_cols=116 Identities=18% Similarity=0.221 Sum_probs=80.5
Q ss_pred CCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHH--HHHHHHhhCCCCCccccchHHHHHHHHHHHhcc
Q 010832 139 IAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGM--LIEYLFEKFPNSEDANETAIGELQEFYRRSKNR 216 (499)
Q Consensus 139 p~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~--l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~ 216 (499)
-+|.||+||+++-|+-|++-|++-+.|.+|..+-..+=.|.++.- +..++... . +.
T Consensus 66 anG~lhlghalnkILkdIinr~~laqg~~alyvpGwDchGLPiEs~kalssl~~~-------~---------------~~ 123 (937)
T KOG0433|consen 66 ANGNLHLGHALNKILKDIINRILLAQGKSALYVPGWDCHGLPIESTKALSSLTES-------E---------------GS 123 (937)
T ss_pred cCCCccchHHHHHHHHHHHHHHHHhcCceeccCCCCCcCCCchHHHHHhhhhhhc-------c---------------cc
Confidence 679999999999999999999999999999999988888877662 11111000 0 00
Q ss_pred cCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeecc-----ccccCcHHHHHHHHHHCCC
Q 010832 217 FDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPGVIDELSKQGL 291 (499)
Q Consensus 217 ~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~~e-----s~~~~~v~~~i~~L~~~g~ 291 (499)
. ..-+++..| +.+++..++...+.+.++||--||..- ..|.-.-.+++..|.++|+
T Consensus 124 ~-s~leiR~~A------------------r~fA~~AIk~Q~e~F~r~gv~aDW~n~Y~T~~~~ye~aQL~iF~~lyekgL 184 (937)
T KOG0433|consen 124 R-TPLEIRAKA------------------RIFADEAIKKQMEAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKLYEKGL 184 (937)
T ss_pred C-CcHHHHHHH------------------HHHHHHHHHHHHHHHHHheeeccCCCceeecChHHHHHHHHHHHHHHhccc
Confidence 0 111223222 345667778888899999999898421 1122234578999999999
Q ss_pred eEee
Q 010832 292 VEES 295 (499)
Q Consensus 292 ~y~~ 295 (499)
+|++
T Consensus 185 vyR~ 188 (937)
T KOG0433|consen 185 VYRS 188 (937)
T ss_pred eecc
Confidence 9964
No 122
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.01 E-value=0.0024 Score=69.29 Aligned_cols=131 Identities=21% Similarity=0.261 Sum_probs=87.4
Q ss_pred ceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHHH
Q 010832 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (499)
Q Consensus 128 ~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (499)
.+...+=..|=.||-+|-||+-+..|-|++.|+.-..||.|.|.+..+-+|.++.--+. ++.+- .+.+
T Consensus 38 p~ftFyDGPPFATGlPHyGHiLa~TIKDiVtRya~~~G~hVeRRFGWD~HGlPVE~eID---KkLgI---~g~~------ 105 (1070)
T KOG0434|consen 38 PKFTFYDGPPFATGLPHYGHILASTIKDIVTRYATQTGHHVERRFGWDTHGLPVEYEID---KKLGI---TGRD------ 105 (1070)
T ss_pred CceeeccCCccccCCCccchhhhhhHHHHHHHHhhccccceeeecccccCCCccceeec---hhcCC---CCHH------
Confidence 34566566678899999999999999999999999999999999999999987752210 00000 0111
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCC--eeeeeccccccC---cHHHH
Q 010832 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRV--DLEEKGESFYNP---YIPGV 282 (499)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI--~fd~~~es~~~~---~v~~~ 282 (499)
++.+-...+| +.+ ++.++-.+..+.+++..|||= .|+.-..++|-. .+=.+
T Consensus 106 dV~kmGI~kY--------------------N~E----CR~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FMESvWwv 161 (1070)
T KOG0434|consen 106 DVMKMGIDKY--------------------NNE----CRKIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWWV 161 (1070)
T ss_pred HHHHHhHHhH--------------------hHH----HHHHHHHHHHHHHHHHHhhccceeccCCcceecHHHHHHHHHH
Confidence 1111111111 122 355667777788889999984 453222456544 34568
Q ss_pred HHHHHHCCCeEe
Q 010832 283 IDELSKQGLVEE 294 (499)
Q Consensus 283 i~~L~~~g~~y~ 294 (499)
+++|.++|++|+
T Consensus 162 FkeL~~kglVYR 173 (1070)
T KOG0434|consen 162 FKELHEKGLVYR 173 (1070)
T ss_pred HHHHHhcCceec
Confidence 999999999995
No 123
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.78 E-value=0.003 Score=66.07 Aligned_cols=51 Identities=18% Similarity=0.077 Sum_probs=37.1
Q ss_pred EEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcc
Q 010832 342 IYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVV 400 (499)
Q Consensus 342 i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v 400 (499)
+=+-|.||-..+-.-....+.+|+. .....|+| ++.+.+|.|||||.|+.+
T Consensus 183 lq~GG~DQ~~ni~~grdl~rr~g~~------~~~~lt~P--LL~~ldG~KmgKs~~~a~ 233 (401)
T COG0162 183 LQLGGSDQWGNILAGRDLIRRLGQK------KVVGLTTP--LLTGLDGKKMGKSEGGAV 233 (401)
T ss_pred hhcCChHHHHHHHHHHHHHHHhCCC------CeEEEEec--cccCCCCCcccccCCCce
Confidence 4567888866555555667788884 34667775 477789999999999944
No 124
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=96.62 E-value=0.028 Score=58.91 Aligned_cols=58 Identities=12% Similarity=0.001 Sum_probs=40.6
Q ss_pred CCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccHHH
Q 010832 337 KAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 404 (499)
Q Consensus 337 ~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~d 404 (499)
+.| +-+.|.||..|+..-..+++..+.. . ..-. +.-++.+.+|.|||||.||.+++++
T Consensus 177 ~~d--i~~gG~DQ~~ni~~g~dLar~~~~~----~--~~~~--t~pLl~~~dg~KmgKS~~~~i~l~~ 234 (377)
T TIGR00234 177 NVD--LQIGGSDQWGNIRKGRDLIRRNLPS----L--GFGL--TVPLLTPADGEKMGKSGGGAVSLDE 234 (377)
T ss_pred cCC--eeEecchhHHHHHHHHHHHHHhcCC----C--ceee--ceeeecCCCCCCccCCCCCcccCCc
Confidence 445 5579999999999888878776532 1 1112 2234666789999999998888764
No 125
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.49 E-value=0.0036 Score=68.48 Aligned_cols=92 Identities=15% Similarity=0.216 Sum_probs=60.5
Q ss_pred EEEecCCccc-cHHHHHHHHHHc-CCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccHHHHHHHHHHHHHHHHHH
Q 010832 342 IYVTDVGQQL-HFDMVFSAAKRA-GWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIE 419 (499)
Q Consensus 342 i~V~g~~q~~-hf~~~~~~~~~l-G~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~dll~e~~~~a~~~~~~ 419 (499)
+|.=|.||+. -|+..-...-|. +.. |...-+.| |++.+++|.|||||.||+|..+.+++..
T Consensus 569 v~LEG~DQ~rGWFQSsLLTsvA~q~kA----PYk~vivH---GFtlDE~G~KMSKSlGNVidP~~v~~G~---------- 631 (937)
T KOG0433|consen 569 VYLEGVDQFRGWFQSSLLTSVAVQNKA----PYKKVIVH---GFTLDENGNKMSKSLGNVVDPTMVTDGS---------- 631 (937)
T ss_pred eEEecchhcchHHHHHHHHHHHHhccC----Cchheeee---eeEecCCccchhhcccCcCCHHHHhCCc----------
Confidence 4667888753 565432211111 222 55566777 7899999999999999999999988761
Q ss_pred hcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHH
Q 010832 420 RGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQM 463 (499)
Q Consensus 420 ~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~ 463 (499)
++.+. +|++++||...+.....++...+.-+
T Consensus 632 -~k~pa------------yGaD~LR~WVA~~~~t~d~~iGp~il 662 (937)
T KOG0433|consen 632 -LKQPA------------YGADGLRFWVAGSENTGESKIGPKIL 662 (937)
T ss_pred -ccCCC------------ccccceeeeeecccccCceecCHHHH
Confidence 22221 57778888777666666666655543
No 126
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.41 E-value=0.017 Score=63.41 Aligned_cols=63 Identities=19% Similarity=0.124 Sum_probs=57.3
Q ss_pred CCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHH
Q 010832 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYL 188 (499)
Q Consensus 126 ~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~ 188 (499)
.+.+.++.|.-|..+|.||+||+-+..=-|+-+-+-|..|++|..-+...=.|.+|.-.+..+
T Consensus 42 ~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPfgFHCTGMPI~A~AdKL 104 (1080)
T KOG0437|consen 42 SKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPFGFHCTGMPIKASADKL 104 (1080)
T ss_pred ccCceeEeccccccCceeeccceeehhhhHHHHHHHHhcCceEEeecccccCCCccHHhHHHH
Confidence 467899999999999999999999999999999999999999999999999999997666544
No 127
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=95.68 E-value=0.05 Score=60.83 Aligned_cols=60 Identities=13% Similarity=0.061 Sum_probs=41.1
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCC-C-Ccccccc-CCcccHHH
Q 010832 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGED-G-KRLRTRF-SEVVRLVD 404 (499)
Q Consensus 336 ~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~-g-~KMSkR~-G~~v~l~d 404 (499)
+++|.+ .+|.||..|+.-...++..+|..+ .+...|.+ ++-+-+ | .|||||. +|.|.|.|
T Consensus 174 l~adiv--pvG~DQ~qh~eLaRdia~~~g~~~-----kpvil~~~--~LpGL~gg~~KMSKS~p~naI~L~D 236 (682)
T PTZ00348 174 LKADIC--QLGLDQRKVNMLAREYCDLIGRKL-----KPVILSHH--MLAGLKQGQAKMSKSDPDSAIFMED 236 (682)
T ss_pred cCCCEE--EeCccHHHHHHHHHHHHHHhCCCC-----Cceecccc--cCcCCCCCCCcCCCCCCCCeecccC
Confidence 456654 489999999987777888888531 22334443 354443 3 5999999 68998876
No 128
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=94.00 E-value=0.043 Score=54.79 Aligned_cols=52 Identities=12% Similarity=0.157 Sum_probs=40.8
Q ss_pred EEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCccc
Q 010832 342 IYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVR 401 (499)
Q Consensus 342 i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~ 401 (499)
+-++|.||..|+..-..+++.+++. .+...|. -++.+.+|+|||||.||.+.
T Consensus 154 l~~~G~DQ~~~i~~~rd~a~r~~~~------~~~~l~~--~ll~~l~G~KMSKS~~~~~~ 205 (269)
T cd00805 154 LQLGGSDQRGNITLGRDLIRKLGYK------KVVGLTT--PLLTGLDGGKMSKSEGNAIW 205 (269)
T ss_pred eeEecHHHHHHHHHHHHHHHHhCCC------CcEEEee--ccccCCCCCcccCCCCCccc
Confidence 3469999999999888999999874 1223333 55777899999999999984
No 129
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=93.92 E-value=0.047 Score=56.19 Aligned_cols=64 Identities=16% Similarity=0.236 Sum_probs=42.4
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcCCC-CCCCCCCCcEE---EEEeEEEecCCCCccccccCCcccHHH
Q 010832 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWL-SADDSTYPKAS---HVGFGLVLGEDGKRLRTRFSEVVRLVD 404 (499)
Q Consensus 336 ~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~-~~~~~~~~~~~---Hv~~g~V~~~~g~KMSkR~G~~v~l~d 404 (499)
+++|.+ .+|.||..|+.--..+++.++.. ++..+ .+... |. -++-+-+|+|||||.+|.|.|.|
T Consensus 148 ~~~d~V--pvG~DQ~qhleLtRdiA~rfn~~yg~~f~-~P~~~~~~~~--~~l~gLdg~KMSKS~~n~I~L~D 215 (332)
T PRK12556 148 FQATHV--PVGKDQIQHIEIARDIATYFNHTFGDTFT-LPEYVIQEEG--AILPGLDGRKMSKSYGNVIPLFA 215 (332)
T ss_pred ccCCEE--EeccccHHHHHHHHHHHHHHHHhccccCC-Cceecccccc--ccccCCCCCCCCCCCCCcccccC
Confidence 456655 49999999999888888887621 00001 12211 33 24656778999999999987764
No 130
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.41 E-value=0.085 Score=53.50 Aligned_cols=66 Identities=20% Similarity=0.233 Sum_probs=41.8
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcCCC-CCCCCCCCcEEEEEeEEEecCCC-CccccccCC-cccHHH
Q 010832 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWL-SADDSTYPKASHVGFGLVLGEDG-KRLRTRFSE-VVRLVD 404 (499)
Q Consensus 336 ~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~-~~~~~~~~~~~Hv~~g~V~~~~g-~KMSkR~G~-~v~l~d 404 (499)
++.+.+ =||.||+.|+.--..+++.++.. ++..+ .+...+..-.+|.+-+| +|||||.+| +|.|.|
T Consensus 144 ~~a~~V--PVG~DQ~qHleLtRDiA~rfn~~y~~~f~-~P~~~~~~~~~i~gL~g~~KMSkS~~ns~I~L~D 212 (314)
T COG0180 144 YQATLV--PVGEDQDQHLELTRDIARRFNHLYGEVFP-LPEALISKVARLPGLDGPGKMSKSDPNSAIFLLD 212 (314)
T ss_pred ccCCee--ccCCCchHHHHHHHHHHHHHHhhcCCccC-CccccccCCCcccCCCCCCcccccCCCCeeeccC
Confidence 444444 49999999999988999888721 00001 11222221135655666 799999999 888765
No 131
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=92.48 E-value=0.052 Score=59.33 Aligned_cols=28 Identities=32% Similarity=0.548 Sum_probs=25.3
Q ss_pred EEEecCCCCccccccCCcccHHHHHHHH
Q 010832 382 GLVLGEDGKRLRTRFSEVVRLVDLLDEA 409 (499)
Q Consensus 382 g~V~~~~g~KMSkR~G~~v~l~dll~e~ 409 (499)
|+|+-.||+|||||+-|+-....++++.
T Consensus 592 GlVLAeDG~KMSKrlkNYPdP~~iinkY 619 (1070)
T KOG0434|consen 592 GLVLAEDGKKMSKRLKNYPDPSLIINKY 619 (1070)
T ss_pred eeEEecccHHHhhhhhcCCCHHHHHHhh
Confidence 8999999999999999998888888874
No 132
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=92.45 E-value=0.15 Score=53.85 Aligned_cols=65 Identities=18% Similarity=0.198 Sum_probs=43.2
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcCCC--CCC--CCCCCcEEEEEeEEEecCCCCccccccCCcccHHH
Q 010832 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWL--SAD--DSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 404 (499)
Q Consensus 336 ~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~--~~~--~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~d 404 (499)
+++|.+- +|.||..|..--..+++.++.. .+. .|.+..-.|+ -+|.+-+|+|||||.||.|.|.|
T Consensus 147 y~ad~VP--VG~DQ~qHlELaRdIA~rFN~~yg~~~F~~Pe~~i~~~~--~~I~gLdg~KMSKS~~n~I~L~D 215 (431)
T PRK12284 147 FNAHKVP--VGRDQIQHIEMARDIAQRFNHLYGGEFFVLPEAVIEESV--ATLPGLDGRKMSKSYDNTIPLFA 215 (431)
T ss_pred cCCCEEE--EcchhHHHHHHHHHHHHHHhhhcCCcccCCCcccccccc--ccccCCCCccccCCCCCEeeecC
Confidence 4666664 9999999999888888887631 000 0111111222 34666678999999999998765
No 133
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=92.21 E-value=0.13 Score=51.90 Aligned_cols=68 Identities=19% Similarity=0.248 Sum_probs=47.1
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCC-ccccccCC-cccHHHHHHHH
Q 010832 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK-RLRTRFSE-VVRLVDLLDEA 409 (499)
Q Consensus 336 ~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~-KMSkR~G~-~v~l~dll~e~ 409 (499)
.+++ +=++|.||..|+.--..++..+|+... -..+...|.+ ++.+.+|. |||||.+| .|.|.|=-+..
T Consensus 148 l~~~--~~~~G~DQ~~~~~l~rd~a~k~~~~~~--~~~p~~l~~~--~l~~l~G~~KMSKS~~ns~I~L~d~~~~i 217 (292)
T PF00579_consen 148 LKAD--LVPGGIDQRGHIELARDLARKFNYKEI--FPKPAGLTSP--LLPGLDGQKKMSKSDPNSAIFLDDSPEEI 217 (292)
T ss_dssp TTHS--EEEEEGGGHHHHHHHHHHHHHHTHHST--SSS-EEEEET--CBBSTTSSSBTTTTTTGGS-BTTTTHHHH
T ss_pred eccc--cccccchHHHHHHHHHHHHhhhccccc--ccCchheeec--cccccCCccccCccCCccEEEEeccchhH
Confidence 3455 446999999999988888988887300 0123445554 57778888 99999999 88887654443
No 134
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=89.95 E-value=0.2 Score=51.61 Aligned_cols=64 Identities=19% Similarity=0.241 Sum_probs=41.5
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCC--Cc--EEEEEeEEEecCCC-CccccccCCcccHHH
Q 010832 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTY--PK--ASHVGFGLVLGEDG-KRLRTRFSEVVRLVD 404 (499)
Q Consensus 336 ~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~--~~--~~Hv~~g~V~~~~g-~KMSkR~G~~v~l~d 404 (499)
++.|.+ .+|.||..|+.-...++..++..-+ .+.. +. ..|. -+|.+-+| .|||||.++.|.|.|
T Consensus 141 ~~~d~v--pvG~DQ~~h~~laRdiA~~~n~~~~-~~~~~~p~~~~~~~--~~i~~L~g~~KMSKS~~~~I~L~D 209 (333)
T PRK12282 141 FKATLV--PVGDDQLPMIEQTREIVRRFNSLYG-TDVLVEPEALLPEA--GRLPGLDGKAKMSKSLGNAIYLSD 209 (333)
T ss_pred hCCCEE--EeccccHHHHHHHHHHHHHHhhhcC-CccccCchhcccCC--CcccCCCCCCcCCCCCCCeeeeeC
Confidence 456655 5999999999988889988883100 0110 11 1122 23544455 799999999998876
No 135
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=89.67 E-value=0.34 Score=49.97 Aligned_cols=67 Identities=21% Similarity=0.285 Sum_probs=43.4
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEe-EEEecCCCC--ccccccC---CcccHHH
Q 010832 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGF-GLVLGEDGK--RLRTRFS---EVVRLVD 404 (499)
Q Consensus 336 ~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~-g~V~~~~g~--KMSkR~G---~~v~l~d 404 (499)
+++|.+ .+|.||..|+.--..++..++..-...=..+...|..+ .+|.+-+|. |||||.+ +.|.|.|
T Consensus 137 ~~~div--pvG~DQ~~h~elaRdia~~~n~~~~~~f~~P~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D 209 (333)
T PRK00927 137 YKADLV--PVGEDQKQHLELTRDIARRFNNLYGEVFPVPEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLD 209 (333)
T ss_pred cCCCEE--eeccchHHHHHHHHHHHHHhhhhccccCCCChhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeC
Confidence 466655 49999999999888888888741000000223333322 345555665 9999999 8998876
No 136
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=89.19 E-value=0.22 Score=54.59 Aligned_cols=43 Identities=12% Similarity=0.126 Sum_probs=35.7
Q ss_pred CccccccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCC-CCCCccccHH
Q 010832 390 KRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNN-RLTNYTFSFD 461 (499)
Q Consensus 390 ~KMSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~-~~~~~~Fd~~ 461 (499)
+|||||++|.|.+.|++++ +|++++|.+.|-.. ++.++++|..
T Consensus 616 eKMSKSK~NGVdP~~~v~~-----------------------------yG~D~tRl~ilf~ap~~~~~nW~es 659 (876)
T KOG0435|consen 616 EKMSKSKHNGVDPADVVLE-----------------------------YGVDTTRLYILFAAPPRDPINWNES 659 (876)
T ss_pred HHhhhcccCCCCHHHHHHH-----------------------------hCchHHHHHHHhhCCcccccccccc
Confidence 3899999999999999888 59999999888765 4778777643
No 137
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=87.32 E-value=0.75 Score=49.82 Aligned_cols=61 Identities=21% Similarity=0.205 Sum_probs=49.2
Q ss_pred CceEEEEecCCCCCCCCccchhhHhH----------------------------HHHHHHHHHHHCCCeEEEEeccCCcc
Q 010832 127 VKKAVVDFSSPNIAKEMHVGHLRSTI----------------------------IGDSLARMLEFSNVEVLRRNHVGDWG 178 (499)
Q Consensus 127 ~~~v~Ve~~SpNp~~plHiGH~R~~i----------------------------iGD~larll~~~G~~V~~~~yi~D~G 178 (499)
|.+|+- --.|-|+|.|||||+...- ..++|.++.+++||+-.++.|.-|.-
T Consensus 246 GGkV~T-RFPPEPNG~LHIGHaKAInvNFgyAk~~~G~cyLRfDDTNPEkEee~yf~sI~e~V~WLG~~P~kvTysSDyF 324 (764)
T KOG1148|consen 246 GGKVVT-RFPPEPNGILHIGHAKAINVNFGYAKAHGGVCYLRFDDTNPEKEEEEYFESIKEMVAWLGFEPYKVTYSSDYF 324 (764)
T ss_pred CCeeEE-eCCCCCCceeeecchhheeechhhhhhhCCeEEEecCCCCcchhhHHHHHHHHHHHHHhCCCceeeecchhHH
Confidence 555554 5569999999999996432 46789999999999999999999998
Q ss_pred hHHHHHHHHH
Q 010832 179 TQFGMLIEYL 188 (499)
Q Consensus 179 ~Qi~~l~~~~ 188 (499)
-|+-.++.-+
T Consensus 325 dqLy~~av~L 334 (764)
T KOG1148|consen 325 DQLYELAVEL 334 (764)
T ss_pred HHHHHHHHHH
Confidence 8877776544
No 138
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=86.68 E-value=0.25 Score=54.65 Aligned_cols=26 Identities=8% Similarity=0.317 Sum_probs=20.9
Q ss_pred EEEecCCCCccccccCCcccHHHHHHH
Q 010832 382 GLVLGEDGKRLRTRFSEVVRLVDLLDE 408 (499)
Q Consensus 382 g~V~~~~g~KMSkR~G~~v~l~dll~e 408 (499)
|.+. .+++|||||.||+.||++-+++
T Consensus 702 GHLm-LNsEKMSKSTGNfmTL~qaieK 727 (1080)
T KOG0437|consen 702 GHLM-LNSEKMSKSTGNFMTLEQAIEK 727 (1080)
T ss_pred ceEE-ecchhhccccCCeeeHHHHHHH
Confidence 4344 3578999999999999988777
No 139
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=83.88 E-value=0.97 Score=47.46 Aligned_cols=37 Identities=24% Similarity=0.424 Sum_probs=25.1
Q ss_pred ecCCCCCCCCccchhhHhHHHHHHHHHHH-HCCCeEEEEeccCCc
Q 010832 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLE-FSNVEVLRRNHVGDW 177 (499)
Q Consensus 134 ~~SpNp~~plHiGH~R~~iiGD~larll~-~~G~~V~~~~yi~D~ 177 (499)
+++--|+|.+|+||.-++ +.+..+ ..|+++ .+.|-||
T Consensus 6 ~sGiqPSG~~HLGnylG~-----ik~wv~lq~~~~~--~~~IADl 43 (398)
T PRK12283 6 LSGMRPTGRLHLGHYHGV-----LKNWVKLQHEYEC--FFFVADW 43 (398)
T ss_pred EEEeCCCCcchHHHHHHH-----HHHHHHHhcCCcE--EEEeecH
Confidence 688899999999997553 345444 246665 3556665
No 140
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=75.01 E-value=2.8 Score=41.83 Aligned_cols=38 Identities=24% Similarity=0.371 Sum_probs=28.1
Q ss_pred ecCCCCCC-CCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCc
Q 010832 134 FSSPNIAK-EMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (499)
Q Consensus 134 ~~SpNp~~-plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~ 177 (499)
|++--||| .+|+||.-.+ ..+.++.+ .|++|+ ..|+|+
T Consensus 4 y~G~~PTg~~lHLG~~~~~---~~~~~lq~-~g~~~~--ilI~D~ 42 (269)
T cd00805 4 YIGFDPTAPSLHLGHLVPL---MKLRDFQQ-AGHEVI--VLIGDA 42 (269)
T ss_pred EEeeCCCCCcccHHHHHHH---HHHHHHHH-CCCeEE--EEECCC
Confidence 78889999 8999998743 25666666 598864 456775
No 141
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=73.58 E-value=3.1 Score=41.92 Aligned_cols=44 Identities=20% Similarity=0.375 Sum_probs=29.1
Q ss_pred CceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCc
Q 010832 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (499)
Q Consensus 127 ~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~ 177 (499)
+++..| |++--|||+||+||+-... .+.++.+ .|++|+.. |+|+
T Consensus 3 ~~~~~~-y~G~~PTg~lHlG~l~~~~---~~~~lq~-~g~~~~i~--iaD~ 46 (292)
T PF00579_consen 3 NKPFRV-YTGIDPTGDLHLGHLVPIM---KLIWLQK-AGFKVIIL--IADL 46 (292)
T ss_dssp HSSEEE-EEEEESSSS-BHHHHHHHH---HHHHHHH-TTSEEEEE--EEHH
T ss_pred CCCcEE-EEeECCCCcccchHHHHHH---HHHHHHh-cCCccceE--ecch
Confidence 344555 8999999999999886543 3444444 89987764 4453
No 142
>PLN02886 aminoacyl-tRNA ligase
Probab=67.47 E-value=6.9 Score=41.16 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=22.3
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcCC
Q 010832 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGW 365 (499)
Q Consensus 336 ~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~ 365 (499)
+++|.+ -+|.||..|+.--..+++.++.
T Consensus 183 ~~a~~V--PVG~DQ~qH~eLtRdiA~rfN~ 210 (389)
T PLN02886 183 YQADLV--PVGEDQKQHLELTRDIAERVNN 210 (389)
T ss_pred cCCCeE--EEccchHHHHHHHHHHHHHHhh
Confidence 466655 4999999999988888887763
No 143
>COG4746 Uncharacterized protein conserved in archaea [Function unknown]
Probab=52.60 E-value=42 Score=26.66 Aligned_cols=71 Identities=21% Similarity=0.259 Sum_probs=47.1
Q ss_pred hHhHHHHHHHHHHHHHHhh-CCCCCCCccccc--c--c--CCCCcccccchHHHHHHhhcCCCCCCCChHHHHHHHHHhC
Q 010832 8 TGNVKRELEKVFDLALKAT-VPNETDVRPLIA--A--C--TAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNL 80 (499)
Q Consensus 8 ~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~v~--~--~--~~~~gd~~~~~a~~lak~~~~~~~~~~~p~~iA~~i~~~l 80 (499)
|+.+++.++..|-.++... +|-. +...++. | | ..+-|+.+.. |+.++|.+-...--.|++.++|..|+++.
T Consensus 1 ~m~v~~e~~~qiv~~~k~a~fPIn-n~~eL~~ALP~G~dttc~~G~~e~t-A~E~~kLlT~~DFPfk~a~~vad~iv~~~ 78 (80)
T COG4746 1 MMTVREEIREQIVEALKGADFPIN-NPEELVAALPSGPDTTCESGGVEVT-AAEAGKLLTDADFPFKSAEQVADTIVNKA 78 (80)
T ss_pred CccHHHHHHHHHHHHHccCCCCCC-CHHHHHHhccCCCCCCccCCCeeee-HHHHHhhccccCCCCCCHHHHHHHHHHhc
Confidence 4567788888887777753 4421 1112222 1 2 2367888877 78899887655555699999999999875
No 144
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=50.31 E-value=15 Score=37.89 Aligned_cols=38 Identities=13% Similarity=0.160 Sum_probs=25.9
Q ss_pred ecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCc
Q 010832 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (499)
Q Consensus 134 ~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~ 177 (499)
|++--|||++|+||.-.++. -.+-|...|. | ...|.||
T Consensus 6 ~sG~~PTG~~HLGn~l~~~~---~~~~lQ~~~~-~--~i~IaD~ 43 (333)
T PRK12282 6 LTGDRPTGKLHLGHYVGSLK---NRVALQNEHE-Q--FVLIADQ 43 (333)
T ss_pred EEeeCCCCcchHHHHHHHHH---HHHHHHhCCC-E--EEEEccc
Confidence 78899999999999754332 2224565664 4 4567776
No 145
>PLN02886 aminoacyl-tRNA ligase
Probab=49.35 E-value=12 Score=39.49 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=26.7
Q ss_pred ecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCc
Q 010832 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (499)
Q Consensus 134 ~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~ 177 (499)
|++--|+|.+|+||.-.++ .-...+.+ |+++. +.|-||
T Consensus 50 ~sGiqPSG~lHLGnylGai--~~~v~lQ~--~~~~~--~~IADl 87 (389)
T PLN02886 50 VSGVQPTGSIHLGNYLGAI--KNWVALQE--TYDTF--FCVVDL 87 (389)
T ss_pred EEEECCCCccHHHHHHHHH--HHHHHHhc--cCCEE--EEEecH
Confidence 8999999999999976554 23333333 77763 567775
No 146
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=48.43 E-value=20 Score=36.58 Aligned_cols=38 Identities=16% Similarity=0.168 Sum_probs=27.0
Q ss_pred ecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCC
Q 010832 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGD 176 (499)
Q Consensus 134 ~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D 176 (499)
+++--|+|.||+||- +|-.-.++.-..++ +..-+.|-|
T Consensus 9 lSG~~PSG~lHLGny----~ga~~~~v~~q~~~-~~~f~~IaD 46 (314)
T COG0180 9 LSGIQPSGKLHLGNY----LGAIRNWVLLQEEY-YECFFFIAD 46 (314)
T ss_pred EecCCCCCCcchhHh----HHHHHHHHHHhccc-CceEEEEec
Confidence 799999999999998 55455566666665 334445555
No 147
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=44.31 E-value=21 Score=38.02 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=26.3
Q ss_pred ecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCc
Q 010832 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (499)
Q Consensus 134 ~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~ 177 (499)
|++--|||.+|+||.-+++- . ..++....||++. +.|-||
T Consensus 6 lSGiqPTG~lHLGNylGaik-~-~v~lq~q~~~~~~--~~IADl 45 (431)
T PRK12284 6 LTGITTTGTPHLGNYAGAIR-P-AIAASRQPGVESF--YFLADY 45 (431)
T ss_pred EEEecCCCcchHHHHHHHHH-H-HHHHHHhCCCcEE--EEeech
Confidence 89999999999999544432 1 2334445688753 455664
No 148
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=43.40 E-value=15 Score=37.82 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=25.8
Q ss_pred ecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcc
Q 010832 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWG 178 (499)
Q Consensus 134 ~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G 178 (499)
|++--|||++|+||.-+++ --+.++-+ +++| ...|.||=
T Consensus 5 ~~G~~PTG~lHLG~~~g~~--~~~~~lQ~--~~~~--~~~IaD~h 43 (333)
T PRK00927 5 LSGIQPTGKLHLGNYLGAI--KNWVELQD--EYEC--FFCIADLH 43 (333)
T ss_pred EEeeCCCccchHHhHHHHH--HHHHHHHh--cCCe--EEEEecHH
Confidence 7888999999999986553 22333433 2554 45677763
No 149
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=40.00 E-value=25 Score=33.22 Aligned_cols=32 Identities=28% Similarity=0.226 Sum_probs=27.9
Q ss_pred cchhhHhHHHHHHHHHHHHCCCeEEEEeccCC
Q 010832 145 VGHLRSTIIGDSLARMLEFSNVEVLRRNHVGD 176 (499)
Q Consensus 145 iGH~R~~iiGD~larll~~~G~~V~~~~yi~D 176 (499)
+||.-+.++.=-+||.|+..|++|.++.-++=
T Consensus 71 ~G~S~Gg~lA~E~A~~Le~~G~~v~~l~liD~ 102 (229)
T PF00975_consen 71 AGWSFGGILAFEMARQLEEAGEEVSRLILIDS 102 (229)
T ss_dssp EEETHHHHHHHHHHHHHHHTT-SESEEEEESC
T ss_pred hccCccHHHHHHHHHHHHHhhhccCceEEecC
Confidence 49999999999999999999999998887663
No 150
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=39.12 E-value=22 Score=36.73 Aligned_cols=40 Identities=13% Similarity=0.116 Sum_probs=24.8
Q ss_pred ecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCc
Q 010832 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (499)
Q Consensus 134 ~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~ 177 (499)
|++--|||.+|+||.-+++-- ..++....|++ ..+.|-||
T Consensus 7 ~sGiqPTG~~HLGnylga~k~--~~~lq~~~~~~--~~~~IADl 46 (332)
T PRK12556 7 LTGIKPTGYPHLGNYIGAIKP--ALQMAKNYEGK--ALYFIADY 46 (332)
T ss_pred EEEECCCCcchHHHHHHHHHH--HHHHHHhcCCe--EEEEEech
Confidence 899999999999996444321 12344445544 34456664
No 151
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=38.96 E-value=4.8e+02 Score=27.34 Aligned_cols=129 Identities=15% Similarity=0.100 Sum_probs=69.6
Q ss_pred HHHHHHHHHhCCCCCCeeeEEEecCCeEEEEeChhHHHHHHHHHHHcCCCCCCCcCCCceEEEEecCCCCCCCCccchhh
Q 010832 70 QPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLR 149 (499)
Q Consensus 70 ~~iA~~i~~~l~~~~~~~~v~vag~GfiN~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ve~~SpNp~~plHiGH~R 149 (499)
-.|+++|+..-.. + + +.+++-| -......+++.++-+............++|+|-.+|-.| -.-+.+
T Consensus 171 T~L~~~Iak~~~~-d-v--vVyv~iG-----ERg~Ev~e~l~ef~~l~~~~~~~~~m~rtvlV~nts~~p----~~~R~~ 237 (369)
T cd01134 171 TVIQQSLSKYSNS-D-I--VIYVGCG-----ERGNEMTEVLEEFPELTDPVTGEPLMKRTVLIANTSNMP----VAAREA 237 (369)
T ss_pred HHHHHHHHhCCCC-C-E--EEEEEeC-----CChHHHHHHHHHHHhhccccccCCccceEEEEEECCCCC----HHHHHH
Confidence 4666777765322 1 2 2233333 334455555554432221111111245788886666543 445778
Q ss_pred HhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHh---hCCCCCccccchHHHHHHHHHHHh
Q 010832 150 STIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFE---KFPNSEDANETAIGELQEFYRRSK 214 (499)
Q Consensus 150 ~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~---~~~~~~~~~~~~i~~l~~~y~~~~ 214 (499)
+...|=++|.++|..|++|.... +|.=+ .+.-.+-+.. +.|....|+..-..+|.++|.++.
T Consensus 238 s~yta~tiAEYfrd~G~dVll~~--Ds~tR-~A~A~REIs~~l~E~P~~~GYP~yl~s~La~~yERAG 302 (369)
T cd01134 238 SIYTGITIAEYFRDMGYNVALMA--DSTSR-WAEALREISGRLEEMPGEEGYPAYLGARLASFYERAG 302 (369)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEE--cChhH-HHHHHHHHHHhcCCCCCccCcCccHHHHHHHHHHhcc
Confidence 88899999999999999999984 55322 2222111111 223333455544456667777655
No 152
>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes. It is particularly abundant in apicomplexans and might mediate a range of cellular functions through its potential interactions with RNA []. The RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Two predicted loop regions that are dominated by glycine and tryptophan residues are found before and after the central beta sheet []. Some proteins known to contain a RAP domain are listed below: Human hypothetical protein MGC5297, Mammalian FAST kinase domain-containing proteins (FASTKDs), Chlamydomonas reinhardtii chloroplastic trans-splicing factor Raa3.
Probab=37.79 E-value=25 Score=25.88 Aligned_cols=18 Identities=17% Similarity=0.024 Sum_probs=15.4
Q ss_pred HHHHHHHCCCeEEEEecc
Q 010832 157 LARMLEFSNVEVLRRNHV 174 (499)
Q Consensus 157 larll~~~G~~V~~~~yi 174 (499)
=.|+|+.+||+|+.+.|.
T Consensus 23 k~r~L~~~G~~Vi~Ip~~ 40 (58)
T PF08373_consen 23 KHRHLKALGYKVISIPYY 40 (58)
T ss_pred HHHHHHHCCCEEEEecHH
Confidence 457899999999999873
No 153
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=36.75 E-value=24 Score=37.26 Aligned_cols=23 Identities=17% Similarity=0.473 Sum_probs=18.6
Q ss_pred EEEecCCCCccccccCCcccHHH
Q 010832 382 GLVLGEDGKRLRTRFSEVVRLVD 404 (499)
Q Consensus 382 g~V~~~~g~KMSkR~G~~v~l~d 404 (499)
.+|.+-+|+|||||.||.|.|.|
T Consensus 255 ~~I~gLdg~KMSKS~~n~I~L~D 277 (398)
T PRK12283 255 SKMPGLDGQKMSKSYGNTIGLRE 277 (398)
T ss_pred CcccCCCCCcCCCCCCCeeeCcC
Confidence 34666678999999999998866
No 154
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=35.16 E-value=28 Score=32.02 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=17.9
Q ss_pred HHHHHHHHCCCeEEEEeccCC
Q 010832 156 SLARMLEFSNVEVLRRNHVGD 176 (499)
Q Consensus 156 ~larll~~~G~~V~~~~yi~D 176 (499)
-|||.||.+||++...+...|
T Consensus 17 ~LARwLRllGydt~~~~~~~d 37 (165)
T COG1656 17 KLARWLRLLGYDTVYSSNESD 37 (165)
T ss_pred HHHHHHHHcCCceeeeccCCc
Confidence 589999999999999875555
No 155
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=32.95 E-value=34 Score=30.74 Aligned_cols=21 Identities=29% Similarity=0.426 Sum_probs=17.6
Q ss_pred HHHHHHHHCCCeEEEEeccCC
Q 010832 156 SLARMLEFSNVEVLRRNHVGD 176 (499)
Q Consensus 156 ~larll~~~G~~V~~~~yi~D 176 (499)
-|||.||.+||+|.....+.|
T Consensus 11 ~Lar~LR~lG~Dt~~~~~~~D 31 (147)
T PF01927_consen 11 RLARWLRLLGYDTLYSRDIDD 31 (147)
T ss_pred HHHHHHHHCCCcEEEeCCCCh
Confidence 489999999999997775555
No 156
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=31.99 E-value=65 Score=28.80 Aligned_cols=37 Identities=19% Similarity=0.097 Sum_probs=31.6
Q ss_pred CCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEec
Q 010832 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNH 173 (499)
Q Consensus 126 ~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~y 173 (499)
+.++|-|==.|+||.+|-|. ++++|...||+|+-+|=
T Consensus 15 ~~K~IAvVG~S~~P~r~sy~-----------V~kyL~~~GY~ViPVNP 51 (140)
T COG1832 15 SAKTIAVVGASDKPDRPSYR-----------VAKYLQQKGYRVIPVNP 51 (140)
T ss_pred hCceEEEEecCCCCCccHHH-----------HHHHHHHCCCEEEeeCc
Confidence 35778888999999999774 78999999999999983
No 157
>cd04765 HTH_MlrA-like_sg2 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 2), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=31.98 E-value=1.3e+02 Score=24.98 Aligned_cols=47 Identities=13% Similarity=0.097 Sum_probs=26.3
Q ss_pred hhhHHHHHhhc-C------CCCCCccccHHHHhcccCCchhHHHHHHHHHHHHHHHhCCChhhhhc
Q 010832 439 GYGAAKYFDLK-N------NRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKK 497 (499)
Q Consensus 439 g~~airy~~L~-~------~~~~~~~Fd~~~~~~~~~n~~~YlqYa~aR~~silrk~~~~~~~~~~ 497 (499)
.+.++||+.-. . .....-.|+.+.+.. ...++++++..|+++++++.
T Consensus 13 s~~tLR~ye~~~gli~p~r~~~g~R~Yt~~di~~------------l~~I~~llr~~G~~l~~i~~ 66 (99)
T cd04765 13 PPHVLRYWETEFPQLKPVKRAGGRRYYRPKDVEL------------LLLIKHLLYEKGYTIEGAKQ 66 (99)
T ss_pred CHHHHHHHHHHcCCCCCcCCCCCCeeeCHHHHHH------------HHHHHHHHHHCCCCHHHHHH
Confidence 47889988533 1 112223355544432 23555667788888877653
No 158
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=31.60 E-value=23 Score=29.54 Aligned_cols=15 Identities=20% Similarity=0.322 Sum_probs=11.6
Q ss_pred cCCCCCCCCccchhhH
Q 010832 135 SSPNIAKEMHVGHLRS 150 (499)
Q Consensus 135 ~SpNp~~plHiGH~R~ 150 (499)
++.++ +|+|.||..-
T Consensus 4 ~~G~F-dp~H~GH~~l 18 (105)
T cd02156 4 FPGEP-GYLHIGHAKL 18 (105)
T ss_pred eCCCC-CCCCHHHHHH
Confidence 35566 8999999963
No 159
>PRK05320 rhodanese superfamily protein; Provisional
Probab=26.70 E-value=1.7e+02 Score=28.98 Aligned_cols=79 Identities=13% Similarity=0.126 Sum_probs=53.5
Q ss_pred CChHHHHHHHHHhCCCCCCeeeEEEecCCeEEEEeC-hhHHHHHHHHHHHcCCCCCCCcCCCceEEEEecCCCCCCCCcc
Q 010832 67 KGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLS-KNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHV 145 (499)
Q Consensus 67 ~~p~~iA~~i~~~l~~~~~~~~v~vag~GfiN~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ve~~SpNp~~plHi 145 (499)
.+|.++.+.+.+.....++-..|-++.-| ||-+++ +..-.+.+...+..+.. ...-.+-++.+.+.|.+.|+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~G~i~ia~eG-iN~t~~g~~~~id~~~~~l~~~~~-----~~dl~~k~~~~~~~pF~~l~v 88 (257)
T PRK05320 15 DDPETLRPLVLARCEALGLKGTILLAPEG-INLFLAGTREAIDAFYAWLRADAR-----FADLQVKESLSDSQPFRRMLV 88 (257)
T ss_pred CCHHHHHHHHHHHHHHCCCeEEEEEcCCC-ceEEEEeeHHHHHHHHHHHhhCCC-----ccCceeecccccCCCchhccc
Confidence 58899988888776555667889999988 899998 44444555555544321 123334467888888888888
Q ss_pred chhhHh
Q 010832 146 GHLRST 151 (499)
Q Consensus 146 GH~R~~ 151 (499)
-.-...
T Consensus 89 k~k~ei 94 (257)
T PRK05320 89 KLKREI 94 (257)
T ss_pred hhhhHH
Confidence 554443
No 160
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=26.54 E-value=6.1e+02 Score=28.34 Aligned_cols=82 Identities=15% Similarity=0.155 Sum_probs=50.7
Q ss_pred CCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHh---hCCCCCccccch
Q 010832 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFE---KFPNSEDANETA 202 (499)
Q Consensus 126 ~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~---~~~~~~~~~~~~ 202 (499)
..++|+|--+|- ..-.-..++...|=++|.++|.+||+|.-.. ++. +.++.-.+-+.. +.|....|+..-
T Consensus 283 m~RTvlVanTSn----~p~~aR~~s~ytg~TiAEYfRD~G~~Vllm~--DS~-sR~AeAlREIs~~lgE~P~~eGYP~yl 355 (578)
T TIGR01043 283 MERTVLIANTSN----MPVAAREASIYTGITIAEYFRDMGYDVALMA--DST-SRWAEAMREISGRLEEMPGEEGYPAYL 355 (578)
T ss_pred ccceEEEEECCC----CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEe--cCh-hHHHHHHHHHHHhcCCCCCCCCcCccH
Confidence 357888854444 5556678899999999999999999999765 332 222222221212 223333455544
Q ss_pred HHHHHHHHHHHh
Q 010832 203 IGELQEFYRRSK 214 (499)
Q Consensus 203 i~~l~~~y~~~~ 214 (499)
-..|.++|.+++
T Consensus 356 ~SrLa~~yERAG 367 (578)
T TIGR01043 356 ASRLAEFYERAG 367 (578)
T ss_pred HHHHHHHHHhhc
Confidence 455677777665
No 161
>PF09456 RcsC: RcsC Alpha-Beta-Loop (ABL); InterPro: IPR019017 This domain is found in the C terminus of the signal transduction response regulator (phospho-relay) kinase RcsC, between the ATP-binding region (IPR003594 from INTERPRO) and the receiver region (IPR001789 from INTERPRO). This domain forms a discrete alpha/beta/loop structure []. The Rcs signalling pathway controls a variety of physiological functions like capsule synthesis, cell division or motility in prokaryotes. The Rcs regulation cascade, involving a multi-step phosphorelay between the two membrane-bound hybrid sensor kinases RcsC and RcsD and the global regulator RcsB, is, up to now, one of the most complicated regulatory systems in bacteria []. ; GO: 0004673 protein histidine kinase activity, 0004871 signal transducer activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent, 0018106 peptidyl-histidine phosphorylation, 0005886 plasma membrane, 0016021 integral to membrane; PDB: 2AYY_A 2AYX_A.
Probab=26.05 E-value=52 Score=27.34 Aligned_cols=25 Identities=24% Similarity=0.495 Sum_probs=19.8
Q ss_pred hhHhHHHHHHHHHHHHCCCeEEEEe
Q 010832 148 LRSTIIGDSLARMLEFSNVEVLRRN 172 (499)
Q Consensus 148 ~R~~iiGD~larll~~~G~~V~~~~ 172 (499)
.||+.+...|-|+|+..|.+|.+-.
T Consensus 6 irNa~Le~yL~~lL~~~G~~v~~y~ 30 (92)
T PF09456_consen 6 IRNAYLESYLQRLLSYHGFQVQRYE 30 (92)
T ss_dssp ---HHHHHHHHHHHCTTTEEEEE-S
T ss_pred ehhHHHHHHHHHHHHHCCcEEEEec
Confidence 6999999999999999999998855
No 162
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=25.23 E-value=1e+02 Score=25.53 Aligned_cols=48 Identities=17% Similarity=0.213 Sum_probs=29.1
Q ss_pred CcHHHHHHHHHHCCCeEeecCeEEEEecCCCCCeEEEcCCCcccccch
Q 010832 277 PYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYAST 324 (499)
Q Consensus 277 ~~v~~~i~~L~~~g~~y~~dGa~~~~~~g~~~d~vl~ksDG~~~Y~t~ 324 (499)
+.+.+++++|++.|++.+.+|.+.=...-.-+..--++.++++--+|+
T Consensus 36 ~~v~~~l~~Le~~GLler~~g~~iK~~~~k~K~~~e~~~hHtYY~LTr 83 (92)
T PF10007_consen 36 EEVREALEKLEEMGLLERVEGKTIKRSEAKFKPKKEVHKHHTYYRLTR 83 (92)
T ss_pred HHHHHHHHHHHHCCCeEEecCcccchhhhhcccchhhhcCCceeeecH
Confidence 457889999999999999888754322211122223444555443454
No 163
>cd01104 HTH_MlrA-CarA Helix-Turn-Helix DNA binding domain of the transcription regulators MlrA and CarA. Helix-turn-helix (HTH) transcription regulator MlrA (merR-like regulator A), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. Its close homolog, CarA from Myxococcus xanthus, is involved in activation of the carotenoid biosynthesis genes by light. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules. Many MlrA- and CarA-like proteins in this group appear to lack the long dimerization helix seen i
Probab=24.67 E-value=2.5e+02 Score=20.91 Aligned_cols=16 Identities=13% Similarity=0.163 Sum_probs=11.8
Q ss_pred HHHHHHhCCChhhhhc
Q 010832 482 CSIIRKSGKDIEELKK 497 (499)
Q Consensus 482 ~silrk~~~~~~~~~~ 497 (499)
..-|++.|++++++++
T Consensus 50 i~~l~~~g~~l~~i~~ 65 (68)
T cd01104 50 IRRLTSEGVRISQAAA 65 (68)
T ss_pred HHHHHHCCCCHHHHHH
Confidence 3346778999988875
No 164
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=24.39 E-value=1.9e+02 Score=23.95 Aligned_cols=14 Identities=21% Similarity=0.577 Sum_probs=10.2
Q ss_pred HHHHhCCChhhhhc
Q 010832 484 IIRKSGKDIEELKK 497 (499)
Q Consensus 484 ilrk~~~~~~~~~~ 497 (499)
.||..|++++++..
T Consensus 52 ~lr~~g~~l~~i~~ 65 (103)
T cd01106 52 FLKELGFSLKEIKE 65 (103)
T ss_pred HHHHcCCCHHHHHH
Confidence 46778888877754
No 165
>cd04763 HTH_MlrA-like Helix-Turn-Helix DNA binding domain of MlrA-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MlrA (merR-like regulator A) and related proteins, N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. Its close homolog, CarA from Myxococcus xanthus, is involved in activation of the carotenoid biosynthesis genes by light. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules. Many MlrA-like proteins in this group appear to lack the long dimerization helix seen
Probab=24.36 E-value=2.5e+02 Score=21.13 Aligned_cols=13 Identities=23% Similarity=0.404 Sum_probs=10.1
Q ss_pred HHHhCCChhhhhc
Q 010832 485 IRKSGKDIEELKK 497 (499)
Q Consensus 485 lrk~~~~~~~~~~ 497 (499)
|++.|.+++++++
T Consensus 53 l~~~g~~l~~i~~ 65 (68)
T cd04763 53 WIDNGVQVSKVKK 65 (68)
T ss_pred HHHcCCCHHHHHH
Confidence 5668999988864
No 166
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=24.10 E-value=27 Score=34.99 Aligned_cols=56 Identities=11% Similarity=0.030 Sum_probs=0.0
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEec---------CCCCccccccCC
Q 010832 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLG---------EDGKRLRTRFSE 398 (499)
Q Consensus 336 ~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~---------~~g~KMSkR~G~ 398 (499)
|+.+++- ||.||..|..-...++++++. -....+.-++-.++.. ...+|||||.+|
T Consensus 154 YksThVP--VGeDQsQHleL~r~lA~~fN~-----~Y~~~~fpvP~~il~~~~~rV~SL~dpekKMSKSd~n 218 (347)
T KOG2713|consen 154 YKSTHVP--VGEDQSQHLELARHLAQAFNK-----TYGTEIFPVPEQILRQSHARVMSLRDPEKKMSKSDPN 218 (347)
T ss_pred hcccccc--CCccHHHHHHHHHHHHHHHhh-----hccCeeecCcHHHHhhhhhhhhhccChhhhcccCCCC
No 167
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=23.67 E-value=73 Score=25.25 Aligned_cols=20 Identities=30% Similarity=0.415 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHCCCeEEEEe
Q 010832 153 IGDSLARMLEFSNVEVLRRN 172 (499)
Q Consensus 153 iGD~larll~~~G~~V~~~~ 172 (499)
=|+.++++++..|++++|-.
T Consensus 21 DGe~ia~~~~~~G~~~iRGS 40 (74)
T PF04028_consen 21 DGELIARVLERFGFRTIRGS 40 (74)
T ss_pred CHHHHHHHHHHcCCCeEEeC
Confidence 48999999999999999977
No 168
>cd04764 HTH_MlrA-like_sg1 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 1). The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules. Many MlrA-like proteins in this group appear to lack the long dimerization helix seen in the N-terminal domains of typical MerR-like proteins.
Probab=23.66 E-value=2.4e+02 Score=21.14 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=13.0
Q ss_pred HHHHHHH--HHHhCCChhhhhc
Q 010832 478 HARICSI--IRKSGKDIEELKK 497 (499)
Q Consensus 478 ~aR~~si--lrk~~~~~~~~~~ 497 (499)
..|+..| +++.|.++++++.
T Consensus 43 l~~l~~i~~l~~~g~~l~~i~~ 64 (67)
T cd04764 43 IELLKKIKTLLEKGLSIKEIKE 64 (67)
T ss_pred HHHHHHHHHHHHCCCCHHHHHH
Confidence 3344443 5668999988864
No 169
>cd04788 HTH_NolA-AlbR Helix-Turn-Helix DNA binding domain of the transcription regulators NolA and AlbR. Helix-turn-helix (HTH) transcription regulators NolA and AlbR, N-terminal domain. In Bradyrhizobium (Arachis) sp. NC92, NolA is required for efficient nodulation of host plants. In Xanthomonas albilineans, AlbR regulates the expression of the pathotoxin, albicidin. These proteins are putatively comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=23.15 E-value=2.3e+02 Score=23.28 Aligned_cols=13 Identities=23% Similarity=0.593 Sum_probs=9.9
Q ss_pred HHHhCCChhhhhc
Q 010832 485 IRKSGKDIEELKK 497 (499)
Q Consensus 485 lrk~~~~~~~~~~ 497 (499)
+++.|+++++++.
T Consensus 53 lr~~G~~l~eI~~ 65 (96)
T cd04788 53 LRRLGFSLREIGR 65 (96)
T ss_pred HHHcCCCHHHHHH
Confidence 6788888887754
No 170
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=22.48 E-value=7.1e+02 Score=27.87 Aligned_cols=82 Identities=16% Similarity=0.169 Sum_probs=51.3
Q ss_pred CCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHh---hCCCCCccccch
Q 010832 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFE---KFPNSEDANETA 202 (499)
Q Consensus 126 ~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~---~~~~~~~~~~~~ 202 (499)
..++|+|--+|-- +-.-..++...|=++|.++|.+||+|.... ++. +.++.-.+-+.. +.|....|+..-
T Consensus 288 m~RTvlVanTSn~----Pv~aR~~s~ytgiTiAEYfRd~G~~Vllm~--DSt-SR~AeAlREIS~~l~E~P~~eGYP~yL 360 (586)
T PRK04192 288 MERTVLIANTSNM----PVAAREASIYTGITIAEYYRDMGYDVLLMA--DST-SRWAEALREISGRLEEMPGEEGYPAYL 360 (586)
T ss_pred ceeEEEEEECCCC----CHHHHHHHHHHHHHHHHHHHHCCCCEEEEe--cCh-HHHHHHHHHHHHhcCCCCccCCcCccH
Confidence 3578888655553 445567788889999999999999999854 332 223322222222 233334456555
Q ss_pred HHHHHHHHHHHh
Q 010832 203 IGELQEFYRRSK 214 (499)
Q Consensus 203 i~~l~~~y~~~~ 214 (499)
-..|+++|.+++
T Consensus 361 ~S~La~~yERAG 372 (586)
T PRK04192 361 ASRLAEFYERAG 372 (586)
T ss_pred HHHHHHHHHhhc
Confidence 566777787765
No 171
>cd04777 HTH_MerR-like_sg1 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 1), N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=21.53 E-value=2.5e+02 Score=23.43 Aligned_cols=50 Identities=12% Similarity=0.154 Sum_probs=27.7
Q ss_pred hhhhHHHHHhhcCCCCCCccccHHHHhcccCCchhHHHHHHHHHHHH--HHHhCCChhhhhc
Q 010832 438 VGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSI--IRKSGKDIEELKK 497 (499)
Q Consensus 438 vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~n~~~YlqYa~aR~~si--lrk~~~~~~~~~~ 497 (499)
+.+.+|||+.=..--. | .. .++--.|=.+...|+.-| ++++|+++++++.
T Consensus 12 vs~~tlRyYe~~GLl~-p-----~~----~~g~r~Y~~~~~~~l~~I~~lr~~G~sL~eI~~ 63 (107)
T cd04777 12 ITIDTVRHYIDLGLLI-P-----EK----KGGQYFFDEKCQDDLEFILELKGLGFSLIEIQK 63 (107)
T ss_pred cCHHHHHHHHHCCCcC-C-----cc----CCCccccCHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 3488999987433211 1 00 111112444455566665 6788999888764
No 172
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=21.06 E-value=64 Score=35.35 Aligned_cols=73 Identities=16% Similarity=0.076 Sum_probs=48.3
Q ss_pred ChhHHHHHHHHHHHcCCCCCCCcCCCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHH
Q 010832 102 SKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQF 181 (499)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi 181 (499)
+-..+...+..++..+.+ ..+..+++.+.++|-..|--.+-.||+||-|-.|.---.|| ..-.|.||||-.+.
T Consensus 102 ~~~~~~~~l~~~~~~c~k--d~is~~k~w~f~~~~s~~~~e~~~~~l~n~~~~~~~~~~lr-----lh~~ylind~~~hc 174 (757)
T KOG4368|consen 102 DMNEFDNLLQPIIDTCTK--DAISAGKNWMFSNAKSPPHCELMAGHLRNRITADGAHFELR-----LHLIYLINDVLHHC 174 (757)
T ss_pred CHHHHHHHHHHHHHHHhH--HHHHHhhhhhhhcCCCchHHHHHHHHHHhhhcccccchhhh-----hhhHHHHHHHHHHH
Confidence 334555555555543322 12356889999999887777777899999888776444444 23578899997653
No 173
>PF03464 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination ; PDB: 3AGK_A 2VGN_A 2VGM_A 3J16_A 3IZQ 3IR9_A 3OBW_A 3MCA_B 2QI2_A 3E1Y_D ....
Probab=20.03 E-value=3.2e+02 Score=23.80 Aligned_cols=28 Identities=25% Similarity=0.460 Sum_probs=20.2
Q ss_pred hHHHHHHHHHhCC-CCCCeeeEEEecCCe
Q 010832 69 PQPVGQAIMKNLP-PSEMIESCSVAGPGF 96 (499)
Q Consensus 69 p~~iA~~i~~~l~-~~~~~~~v~vag~Gf 96 (499)
-.+|++.|.+.|- ....+..|-++||||
T Consensus 56 ~~~i~~~l~~~f~~~~~~~~~iIiaGPGf 84 (133)
T PF03464_consen 56 FKEIAEALKKYFLVNFDDVKCIIIAGPGF 84 (133)
T ss_dssp HHHHHHHHHHHCCCHTTTCSEEEEEESTT
T ss_pred HHHHHHHHHHHhhhccccccEEEEECCHH
Confidence 4788888888732 223478899999994
Done!