Query 010832
Match_columns 499
No_of_seqs 217 out of 1895
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 15:12:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010832.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010832hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f7u_A Arginyl-tRNA synthetase 100.0 2.1E-99 7E-104 824.7 41.4 463 9-492 29-508 (607)
2 2zue_A Arginyl-tRNA synthetase 100.0 1.3E-96 5E-101 807.7 40.3 459 10-489 4-522 (629)
3 1iq0_A Arginyl-tRNA synthetase 100.0 5.6E-89 1.9E-93 744.9 43.9 444 11-490 2-489 (592)
4 3fnr_A Arginyl-tRNA synthetase 100.0 5E-76 1.7E-80 621.8 37.2 337 99-490 1-356 (464)
5 1li5_A Cysrs, cysteinyl-tRNA s 100.0 1.2E-38 4.2E-43 337.7 23.9 262 126-489 19-327 (461)
6 3tqo_A Cysteinyl-tRNA syntheta 100.0 1.1E-38 3.9E-43 335.3 18.8 251 126-466 22-315 (462)
7 3sp1_A Cysteinyl-tRNA syntheta 100.0 1.7E-36 5.9E-41 320.2 15.6 258 129-466 42-346 (501)
8 3c8z_A Cysteinyl-tRNA syntheta 100.0 1.8E-33 6.2E-38 294.8 24.5 250 127-466 37-338 (414)
9 4dlp_A Aminoacyl-tRNA syntheta 100.0 1.6E-33 5.5E-38 304.9 20.2 269 127-488 24-391 (536)
10 3kfl_A Methionyl-tRNA syntheta 100.0 5.2E-33 1.8E-37 302.2 17.8 270 125-487 23-408 (564)
11 2csx_A Methionyl-tRNA syntheta 100.0 1.9E-32 6.7E-37 293.9 16.0 269 127-488 4-365 (497)
12 2d5b_A Methionyl-tRNA syntheta 100.0 8.6E-32 2.9E-36 289.1 17.7 270 127-488 2-367 (500)
13 3h99_A Methionyl-tRNA syntheta 100.0 3.7E-30 1.3E-34 279.9 20.5 274 125-488 15-416 (560)
14 2x1l_A Methionyl-tRNA syntheta 100.0 5.1E-29 1.7E-33 269.0 23.6 271 125-488 9-380 (524)
15 2o5r_A Glutamyl-tRNA synthetas 99.9 9.9E-27 3.4E-31 246.6 18.6 149 296-468 182-334 (481)
16 1irx_A Lysyl-tRNA synthetase; 99.9 1.3E-27 4.5E-32 257.5 7.5 274 105-465 4-325 (523)
17 1rqg_A Methionyl-tRNA syntheta 99.9 1.2E-25 4.2E-30 250.2 21.1 270 128-488 2-414 (722)
18 3al0_C Glutamyl-tRNA(Gln) amid 99.9 8.8E-26 3E-30 244.2 14.7 270 102-468 104-430 (592)
19 3u1f_A Methionyl-tRNA syntheta 99.9 1.1E-23 3.9E-28 228.0 21.6 124 126-302 7-133 (542)
20 1wkb_A Leucyl-tRNA synthetase; 99.9 6.2E-22 2.1E-26 223.8 24.9 141 127-296 33-180 (810)
21 3afh_A Glutamyl-tRNA synthetas 99.9 5.9E-22 2E-26 209.9 18.4 262 129-489 25-349 (488)
22 1nzj_A Hypothetical protein YA 99.9 3.8E-22 1.3E-26 199.2 11.5 233 134-456 9-288 (298)
23 1gax_A Valrs, valyl-tRNA synth 99.9 7.8E-20 2.7E-24 206.3 26.4 134 126-296 32-170 (862)
24 1ile_A Ilers, isoleucyl-tRNA s 99.8 1.3E-20 4.3E-25 213.1 18.1 133 126-294 36-173 (821)
25 3gdz_A Arginyl-tRNA synthetase 99.8 8.9E-21 3E-25 161.7 12.1 103 7-117 3-106 (109)
26 1ffy_A Isoleucyl-tRNA syntheta 99.8 3.1E-20 1.1E-24 211.2 19.9 128 127-295 47-179 (917)
27 2v0c_A Aminoacyl-tRNA syntheta 99.8 5.2E-19 1.8E-23 200.3 23.4 116 127-295 32-152 (878)
28 4arc_A Leucine--tRNA ligase; l 99.8 5.2E-19 1.8E-23 199.3 23.0 117 126-295 51-172 (880)
29 4g6z_A Glutamate-tRNA ligase; 99.8 3E-19 1E-23 188.2 19.4 266 128-491 24-360 (490)
30 2cfo_A Glutamyl-tRNA synthetas 99.8 1.7E-19 5.8E-24 191.4 17.4 239 135-468 6-320 (492)
31 1j09_A Glutamyl-tRNA synthetas 99.8 1.6E-18 5.5E-23 182.8 19.0 158 308-490 174-340 (468)
32 2ja2_A Glutamyl-tRNA synthetas 99.8 7E-18 2.4E-22 178.8 17.5 137 308-468 183-329 (498)
33 3aii_A Glutamyl-tRNA synthetas 99.7 4.4E-18 1.5E-22 180.9 11.2 228 128-467 95-393 (553)
34 4gri_A Glutamate--tRNA ligase; 99.7 1.7E-17 5.7E-22 177.6 15.7 137 308-468 204-345 (512)
35 1wz2_A Leucyl-tRNA synthetase; 99.7 6.1E-16 2.1E-20 177.4 25.3 138 128-294 34-178 (967)
36 1qtq_A GLNRS, protein (glutami 99.6 2.3E-15 7.8E-20 160.2 17.6 212 104-409 9-300 (553)
37 2hz7_A Glutaminyl-tRNA synthet 99.6 2.8E-15 9.4E-20 166.0 16.3 241 104-463 49-367 (851)
38 2cyb_A Tyrosyl-tRNA synthetase 98.2 5.1E-06 1.8E-10 83.7 11.1 63 335-407 168-230 (323)
39 2dlc_X Tyrosyl-tRNA synthetase 98.2 3.6E-06 1.2E-10 87.0 9.5 61 335-405 180-242 (394)
40 1n3l_A Tyrosyl-tRNA synthetase 98.0 8.1E-06 2.8E-10 83.7 7.6 59 336-404 177-236 (372)
41 2cya_A Tyrosyl-tRNA synthetase 97.5 0.00014 4.6E-09 74.4 7.9 60 336-405 176-253 (364)
42 2g36_A Tryptophanyl-tRNA synth 97.5 0.00012 3.9E-09 74.2 7.1 65 335-404 151-218 (340)
43 2zp1_A Tyrosyl-tRNA synthetase 97.3 0.00061 2.1E-08 68.2 9.1 59 336-408 162-221 (314)
44 3p0j_A Tyrosyl-tRNA synthetase 97.2 0.0014 4.8E-08 72.0 11.6 60 336-404 182-244 (690)
45 3a04_A Tryptophanyl-tRNA synth 96.8 0.0029 9.9E-08 64.7 8.3 60 341-404 210-270 (372)
46 2pid_A Tyrosyl-tRNA synthetase 95.1 0.013 4.5E-07 59.4 4.1 59 336-404 209-267 (356)
47 2yxn_A Tyrosyl-tRNA synthetase 94.8 0.013 4.6E-07 58.5 3.1 58 337-404 191-248 (322)
48 2jan_A Tyrosyl-tRNA synthetase 94.5 0.028 9.4E-07 58.4 4.7 59 336-404 186-245 (432)
49 1jil_A Tyrrs, tyrosyl-tRNA syn 94.0 0.039 1.3E-06 57.2 4.5 58 337-404 186-244 (420)
50 1h3f_A Tyrosyl-tRNA synthetase 93.9 0.044 1.5E-06 56.9 4.9 59 336-404 186-245 (432)
51 2ts1_A Tyrosyl-tRNA synthetase 93.9 0.035 1.2E-06 57.4 3.9 58 337-404 185-243 (419)
52 2el7_A Tryptophanyl-tRNA synth 93.6 0.025 8.6E-07 56.9 2.2 61 336-404 140-208 (337)
53 1r6t_A Tryptophanyl-tRNA synth 93.2 0.066 2.2E-06 56.3 4.8 56 345-408 309-367 (477)
54 3tzl_A Tryptophanyl-tRNA synth 93.1 0.022 7.7E-07 56.9 0.9 66 336-404 138-205 (322)
55 2ip1_A Tryptophanyl-tRNA synth 93.1 0.048 1.6E-06 56.7 3.4 54 343-404 253-309 (432)
56 3i05_A Tryptophanyl-tRNA synth 92.6 0.038 1.3E-06 56.7 1.8 54 343-404 228-283 (395)
57 1r6u_A Tryptophanyl-tRNA synth 92.5 0.032 1.1E-06 58.0 1.1 53 345-405 262-317 (437)
58 1yi8_B Tryptophanyl-tRNA synth 92.3 0.046 1.6E-06 55.3 2.0 67 336-405 161-229 (351)
59 3hv0_A Tryptophanyl-tRNA synth 92.3 0.036 1.2E-06 56.9 1.2 57 344-408 225-284 (393)
60 3vgj_A Tyrosyl-tRNA synthetase 92.2 0.085 2.9E-06 53.7 3.8 60 336-404 199-261 (373)
61 3tze_A Tryptophanyl-tRNA synth 92.2 0.061 2.1E-06 55.3 2.7 55 342-404 246-303 (406)
62 3jxe_A Tryptophanyl-tRNA synth 91.9 0.049 1.7E-06 55.8 1.7 57 344-408 212-271 (392)
63 2j5b_A Tyrosyl-tRNA synthetase 91.3 0.088 3E-06 53.1 2.7 62 337-408 186-250 (348)
64 1y42_X Tyrosyl-tRNA synthetase 91.2 0.084 2.9E-06 54.1 2.5 65 336-404 231-306 (392)
65 3hzr_A Tryptophanyl-tRNA synth 91.2 0.14 4.9E-06 52.2 4.2 52 345-404 230-283 (386)
66 2yy5_A Tryptophanyl-tRNA synth 91.1 0.057 1.9E-06 54.5 1.1 68 335-405 145-219 (348)
67 1i6k_A TRPRS, tryptophanyl-tRN 89.9 0.15 5E-06 51.1 2.8 71 335-408 135-212 (328)
68 3foc_A Tryptophanyl-tRNA synth 89.6 0.095 3.2E-06 54.5 1.2 53 344-404 292-347 (451)
69 2cyc_A Tyrosyl-tRNA synthetase 85.2 0.33 1.1E-05 49.4 2.2 64 336-405 179-266 (375)
70 2el7_A Tryptophanyl-tRNA synth 84.7 0.28 9.6E-06 49.2 1.3 39 134-177 5-44 (337)
71 3hzr_A Tryptophanyl-tRNA synth 81.8 0.92 3.1E-05 46.2 3.8 45 127-178 80-125 (386)
72 1i6k_A TRPRS, tryptophanyl-tRN 77.6 0.74 2.5E-05 45.9 1.5 38 134-177 5-42 (328)
73 3prh_A Tryptophanyl-tRNA synth 76.8 0.54 1.9E-05 47.9 0.3 63 336-404 170-242 (388)
74 3n9i_A Tryptophanyl-tRNA synth 75.6 0.6 2.1E-05 46.9 0.2 65 336-404 151-223 (346)
75 3vgj_A Tyrosyl-tRNA synthetase 75.0 1.9 6.7E-05 43.6 3.8 39 134-177 60-98 (373)
76 3sz3_A Tryptophanyl-tRNA synth 73.9 0.51 1.8E-05 47.3 -0.8 71 336-408 142-221 (341)
77 2yxn_A Tyrosyl-tRNA synthetase 73.5 1.9 6.4E-05 42.8 3.2 38 134-177 37-75 (322)
78 2ts1_A Tyrosyl-tRNA synthetase 73.0 2.4 8.3E-05 43.6 4.0 41 130-177 31-72 (419)
79 2pid_A Tyrosyl-tRNA synthetase 72.6 2.4 8.2E-05 42.7 3.8 43 128-177 45-88 (356)
80 1h3f_A Tyrosyl-tRNA synthetase 71.3 2.9 0.0001 43.2 4.1 43 130-179 38-81 (432)
81 3tzl_A Tryptophanyl-tRNA synth 70.8 1 3.4E-05 44.8 0.5 38 134-177 7-44 (322)
82 1yi8_B Tryptophanyl-tRNA synth 70.7 1.2 4.1E-05 44.8 1.1 40 129-177 22-63 (351)
83 1jil_A Tyrrs, tyrosyl-tRNA syn 70.3 2.6 8.8E-05 43.4 3.4 41 130-177 33-74 (420)
84 1y42_X Tyrosyl-tRNA synthetase 69.9 2.4 8.1E-05 43.3 3.0 38 134-177 68-106 (392)
85 3jxe_A Tryptophanyl-tRNA synth 68.6 3.2 0.00011 42.3 3.7 43 128-177 72-115 (392)
86 2j5b_A Tyrosyl-tRNA synthetase 68.4 3.6 0.00012 41.2 4.0 42 130-177 41-82 (348)
87 2jan_A Tyrosyl-tRNA synthetase 67.3 3.9 0.00013 42.3 4.0 41 130-177 33-74 (432)
88 1r6t_A Tryptophanyl-tRNA synth 67.3 4.3 0.00015 42.5 4.4 44 127-177 153-198 (477)
89 2yy5_A Tryptophanyl-tRNA synth 65.7 1.5 5.3E-05 44.0 0.6 38 134-177 8-45 (348)
90 3i05_A Tryptophanyl-tRNA synth 64.2 4.4 0.00015 41.3 3.7 45 127-177 76-121 (395)
91 1r6u_A Tryptophanyl-tRNA synth 63.9 4.8 0.00016 41.6 3.9 44 127-177 106-151 (437)
92 2ip1_A Tryptophanyl-tRNA synth 62.9 5.1 0.00017 41.4 3.9 42 129-177 102-145 (432)
93 3hv0_A Tryptophanyl-tRNA synth 62.3 4 0.00014 41.6 3.0 45 129-179 74-119 (393)
94 3foc_A Tryptophanyl-tRNA synth 57.9 6.3 0.00022 40.8 3.6 45 127-178 89-135 (451)
95 3tze_A Tryptophanyl-tRNA synth 56.0 7.1 0.00024 39.9 3.5 44 127-177 99-144 (406)
96 3sz3_A Tryptophanyl-tRNA synth 52.5 3.7 0.00013 41.0 0.7 38 134-177 10-47 (341)
97 3prh_A Tryptophanyl-tRNA synth 49.8 4.7 0.00016 41.0 1.0 38 134-177 39-76 (388)
98 2cyc_A Tyrosyl-tRNA synthetase 44.2 13 0.00043 37.6 3.2 39 134-177 37-75 (375)
99 1iio_A Conserved hypothetical 38.9 13 0.00043 29.1 1.7 68 10-79 7-81 (84)
100 3n9i_A Tryptophanyl-tRNA synth 32.0 12 0.00042 37.3 0.8 36 134-177 19-56 (346)
101 3r6u_A Choline-binding protein 23.1 48 0.0017 31.8 3.2 39 141-179 12-54 (284)
102 3p0j_A Tyrosyl-tRNA synthetase 22.3 60 0.0021 35.4 4.0 35 139-177 390-425 (690)
103 1qm9_A Polypyrimidine tract-bi 21.6 1.1E+02 0.0038 26.5 5.2 35 140-174 120-154 (198)
104 4gi5_A Quinone reductase; prot 20.7 1.6E+02 0.0053 28.2 6.3 40 126-172 21-60 (280)
No 1
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=100.00 E-value=2.1e-99 Score=824.70 Aligned_cols=463 Identities=29% Similarity=0.459 Sum_probs=400.3
Q ss_pred HhHHHHHHHHHHHHHHhhCCCCC-CCccccccc-CCCCcccccchHHHHHHhhcCCCCCCCChHHHHHHHHHhCCCCCCe
Q 010832 9 GNVKRELEKVFDLALKATVPNET-DVRPLIAAC-TAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMI 86 (499)
Q Consensus 9 ~~~~~~~~~~l~~~l~~~~~~~~-~~~~~v~~~-~~~~gd~~~~~a~~lak~~~~~~~~~~~p~~iA~~i~~~l~~~~~~ 86 (499)
+++.+.+++.|.++|...+.... ...+.+++| ++.||||+||+|| +|.+| ++|++||++|+++|+..+.|
T Consensus 29 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~v~~~~~~~~GD~a~~~~~--~k~~~------~~P~~iA~~i~~~l~~~~~i 100 (607)
T 1f7u_A 29 VNIVDLMRNYISQELSKISGVDSSLIFPALEWTNTMERGDLLIPIPR--LRIKG------ANPKDLAVQWAEKFPCGDFL 100 (607)
T ss_dssp TCHHHHHHHHHHHHHHHHHCCCHHHHGGGCEECSSGGGCSEEEEGGG--GCCTT------CCHHHHHHHHHHTCCCTTTE
T ss_pred ccHHHHHHHHHHHHHHHHhCCCccccccceeCCCCCCCCchhhHHHH--HHhcC------CCHHHHHHHHHHhccccCce
Confidence 35666777777777766532111 122345555 7899999999776 38777 99999999999999877789
Q ss_pred eeEEEecCCeEEEEeChhHHHHHH-HHHHHcCCCCCC-CcCCCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHC
Q 010832 87 ESCSVAGPGFVNVVLSKNWMAKNI-QKMLVDGIETWA-PKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFS 164 (499)
Q Consensus 87 ~~v~vag~GfiN~~l~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~ 164 (499)
++++++|| ||||+|+++++.+.+ ..++..++.++. +.+.+++|+||||||||||||||||+|++|+||+|+|+|+++
T Consensus 101 ~~ve~ag~-fiN~~l~~~~~~~~~~~~i~~~~~~~G~~~~~~~~~V~ve~~spN~~~plHvGHlRs~iiGD~laRil~~~ 179 (607)
T 1f7u_A 101 EKVEANGP-FIQFFFNPQFLAKLVIPDILTRKEDYGSCKLVENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKL 179 (607)
T ss_dssp EEEEEETT-EEEEEECHHHHHHHHHHHHHHHGGGTTCCCCSSCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHT
T ss_pred eEEEEcCC-EEEEEECHHHHHHHHHHHHHhhhhhcCCCcccCCCeEEEEecCCCCCCCCccchHHHHHHHHHHHHHHHHc
Confidence 99999996 999999999999754 456666655443 346789999999999999999999999999999999999999
Q ss_pred CCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHHHHHHHHHhcccCCC-------hHHHHHHHHHHHHhccC
Q 010832 165 NVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSD-------PAFKERAQQAVVRLQSG 237 (499)
Q Consensus 165 G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~-------~~~~~~a~~~~~~~e~g 237 (499)
||+|+++|||||||+||++|+.+ ..++++......+++.++.++|+++++.++.+ +.+.++|++.+.+||+|
T Consensus 180 G~~V~~~~~i~D~G~Q~~~l~~~-~~~~g~~~~~~~~~i~~l~~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~g 258 (607)
T 1f7u_A 180 GWEVIRMNYLGDWGKQFGLLAVG-FERYGNEEALVKDPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDG 258 (607)
T ss_dssp TCEEEEEEEEBCCSHHHHHHHHH-HHHHCCHHHHHHCHHHHHHHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHT
T ss_pred CCCeeEEEeecCcchHHHHHHHH-HHHhCchhhccCCChHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCC
Confidence 99999999999999999999977 45566432223457888999999999988877 88999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHcCCeee-eecccccc-CcHHHHHHHHHHCCCeEeecCeEEEEec--CCCCC-eEE
Q 010832 238 EPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGESFYN-PYIPGVIDELSKQGLVEESQGARVIFIE--GVNIP-LII 312 (499)
Q Consensus 238 d~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd-~~~es~~~-~~v~~~i~~L~~~g~~y~~dGa~~~~~~--g~~~d-~vl 312 (499)
++++.++|+.+++++++.|+++|++|||+|| |.+||.|. +.+.++++.|+++|++|+++|++||+++ |++.| +|+
T Consensus 259 d~e~~~~w~~~~~~~~~~~~~~~~~L~V~fD~~~~ES~~~~~~~~~vi~~L~~kG~~ye~dGa~~~~~~~~g~~~d~~v~ 338 (607)
T 1f7u_A 259 DEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQVSKESMLKAIDLFKEKGLTHEDKGAVLIDLTKFNKKLGKAIV 338 (607)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEGGGCCHHHHHHHHHHHHHTTCEEEETTEEEEEGGGTCTTTCEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHcCCcceeecCcchhhhhHHHHHHHHHHhCCCEEEECCcEEEEecccCCCCCceeE
Confidence 9999999999999999999999999999995 67899887 7899999999999999999999999998 44544 899
Q ss_pred EcCCCcccccchhHHHHHHHHhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCcc
Q 010832 313 VKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRL 392 (499)
Q Consensus 313 ~ksDG~~~Y~t~DiA~~~~k~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KM 392 (499)
+||||+++|.|+|||||+||+..+++|++|||||++|++||+|++++++++|+ +++..|+|++||+|. ||
T Consensus 339 ~KsDG~~~Y~t~Dia~~~~k~~~~~~d~~IyV~g~~q~~~f~q~~~~~~~lG~-----~~~~~~~Hv~fg~v~-----kM 408 (607)
T 1f7u_A 339 QKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQFFEILKQMGF-----EWAKDLQHVNFGMVQ-----GM 408 (607)
T ss_dssp ECTTSCCCHHHHHHHHHHHHHHHHCCSEEEEECCGGGHHHHHHHHHHHHHTTC-----GGGGGEEEECCCCEE-----SC
T ss_pred eccCCCcCCCCCcHHHHHHHHhhcCCCcEEEEEcChHhhHHHHHHHHHHHcCC-----CcCcEEEEecccccc-----cc
Confidence 99999999999999999999977899999999999999999999999999999 456689999999997 49
Q ss_pred ccccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcccCCchh
Q 010832 393 RTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAV 472 (499)
Q Consensus 393 SkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~n~~~ 472 (499)
|||+||+|+|+||++++..+|.+.+.++ +......++..++|++||+++|||++|+.+++++++|||+++++++|||||
T Consensus 409 SkR~G~~v~L~dLlde~~~~a~~~~~~~-~~~~~~~~e~~~~a~~vgi~avry~~Ls~~~~s~~~Fd~d~~~~~~g~t~p 487 (607)
T 1f7u_A 409 STRKGTVVFLDNILEETKEKMHEVMKKN-ENKYAQIEHPEEVADLVGISAVMIQDMQGKRINNYEFKWERMLSFEGDTGP 487 (607)
T ss_dssp CGGGTCCCBHHHHHHHHHHHHHHHHHTC-HHHHTTCSCHHHHHHHHHHHHHHHHHHSSCTTCCEECCHHHHHCCSSSSHH
T ss_pred cCCCCCcccHHHHHHHHHHHHHHHHHhC-cccccchhhHHHHHHHHHHHHHHHHHhccCCCCCcccCHHHHHHHhccchH
Confidence 9999999999999999999998766522 110011367889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh-CCCh
Q 010832 473 YLLYAHARICSIIRKS-GKDI 492 (499)
Q Consensus 473 YlqYa~aR~~silrk~-~~~~ 492 (499)
|||||||||||||||+ +.+.
T Consensus 488 ylqYa~aRi~SIlrka~~~~~ 508 (607)
T 1f7u_A 488 YLQYAHSRLRSVERNASGITQ 508 (607)
T ss_dssp HHHHHHHHHHHHHHHTTTSCH
T ss_pred HHHHHHHHHHHHHHHhcCCCc
Confidence 9999999999999999 6554
No 2
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=100.00 E-value=1.3e-96 Score=807.70 Aligned_cols=459 Identities=24% Similarity=0.339 Sum_probs=401.3
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCCCccccccc-CCCCcccccchHHHHHHhhcCCCCCCCChHHHHHHHHHhCCC--CCCe
Q 010832 10 NVKRELEKVFDLALKATVPNETDVRPLIAAC-TAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPP--SEMI 86 (499)
Q Consensus 10 ~~~~~~~~~l~~~l~~~~~~~~~~~~~v~~~-~~~~gd~~~~~a~~lak~~~~~~~~~~~p~~iA~~i~~~l~~--~~~~ 86 (499)
++++.++++|.+++...... ......|++| +++|||||||+||.|||.+| ++|++||++|++.|+. ++.|
T Consensus 4 ~~~~~i~~~~~~a~~~~~~~-~~~~~~v~~~~~~~~GD~~~n~a~~lak~~~------~~P~~iA~~i~~~l~~~~~~~i 76 (629)
T 2zue_A 4 EIRESVKERIEEIIKEIAPQ-WEGEIELKETPDPKLGDFGTPIAFKLAKLLK------RPPIEIAEKIVEKLKLNLPEGI 76 (629)
T ss_dssp TTHHHHHHHHHHHHHHHCTT-CCCCCCCEECSSGGGCSEEECHHHHHHHHHT------SCHHHHHHHHHHHHTTSCCTTE
T ss_pred HHHHHHHHHHHHHHHhcCcc-ccccceeeCCCCCCCCceeHHHHHHHHHHcC------CCHHHHHHHHHHHhhhccCCCe
Confidence 46777888888888765321 1122335555 78999999999999999999 9999999999999976 6689
Q ss_pred eeEEEecCCeEEEEeChhHHHH-HHHHHHHcCCCCCC-CcCCCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHC
Q 010832 87 ESCSVAGPGFVNVVLSKNWMAK-NIQKMLVDGIETWA-PKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFS 164 (499)
Q Consensus 87 ~~v~vag~GfiN~~l~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~ 164 (499)
++|+++| |||||+|++.++.. .+..++..++.++. +.+++++|+||||||||||||||||+|++|+||+|||+|+++
T Consensus 77 ~~vevag-GfiN~~l~~~~~~~~~~~~i~~~~~~yG~~~~~~~~~V~ve~~spN~~~~~HiGH~Rs~iigD~laR~l~~~ 155 (629)
T 2zue_A 77 KDVKAVN-GYINVFIDYPHFARILINDILAKGDRFGSSEIGKGKKVIVEHTSVNPTKPLHMGHARNAILGDVMARILRFL 155 (629)
T ss_dssp EEEEEET-TEEEEEECHHHHHHHHHHHHHHHGGGTTCCCTTTTCEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEcC-CEEEEEECHHHHHHHHHHHHHhcchhcCCCccCCCCEEEEEeeCCCCCCCCccchhHHHHHHHHHHHHHHHc
Confidence 9999999 99999999995555 45566666655443 346789999999999999999999999999999999999999
Q ss_pred CCeEEEEeccCCcchHHHHHHHHHHhhCCCCCcc----------ccchH-HHHHHHHHHHhcccCCChHHHHHHHHHHHH
Q 010832 165 NVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDA----------NETAI-GELQEFYRRSKNRFDSDPAFKERAQQAVVR 233 (499)
Q Consensus 165 G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~----------~~~~i-~~l~~~y~~~~~~~~~~~~~~~~a~~~~~~ 233 (499)
||+|+++|||||||+||++++.++.. ++..... .++++ ..+.+.|+++.+.++.+|+|.+++++.+.+
T Consensus 156 G~~V~~~~~i~D~G~Q~~~l~~~~~~-~g~~~~~~~~~~~~~~~~~~~~d~~~g~~y~~~a~~~~~~~~~~~~~~~~~~~ 234 (629)
T 2zue_A 156 GYEVEVQNYIDDLGIQFAQVYWGYLR-LKEEFERIMNELRERGLKDNPIDHALGLLYVEVNRRLEDNPELENEIRDIMKK 234 (629)
T ss_dssp TCEEEEEEEECTTSHHHHHHHHHHHH-CHHHHHHHHHHHHHHTSCSCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred CCCceEEecccchhHHHHHHHHHHHH-hCCcchhhhhhhcccccccCcchhhHHHHHHHHHHHHhcCchHHHHHHHHHHh
Confidence 99999999999999999999865432 2221100 23455 446788999888888899999999999999
Q ss_pred hccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeee-eeccccc--cCcHHHHHHHHHHCCCeE-----eecCeEEEEec-
Q 010832 234 LQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGESFY--NPYIPGVIDELSKQGLVE-----ESQGARVIFIE- 304 (499)
Q Consensus 234 ~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd-~~~es~~--~~~v~~~i~~L~~~g~~y-----~~dGa~~~~~~- 304 (499)
+|+|| .+|+.+++.++..|+++|++|||+|| |.+||.| .+.+++++++|+++|++| +.+|++||+++
T Consensus 235 ~e~gd----~~~~~~~~~~~~~f~~~~~~L~I~~D~~~~es~~~~~~~v~~vi~~L~~kG~~y~~~~ge~~Ga~~v~~~~ 310 (629)
T 2zue_A 235 LESGE----LYGRKLAEEVVRAQMVTTYKLGVKYDLLVWESDIVRRKLFEIALELLSKNENFYIPSDGKYRGAFVMDLRK 310 (629)
T ss_dssp HHHSS----SCCHHHHHHHHHHHHHHHHHHTCCCSEEEEHHHHHHTTHHHHHHHHHHTSTTEECCSSSTTTTCEEEECTT
T ss_pred ccccc----HHHHHHHHHHHHHHHHHHHHcCCccccccCcCccccchhHHHHHHHHHHCCCccccccCCcCCcEEEECcc
Confidence 99998 78999999999999999999999996 6788877 889999999999999999 88999999998
Q ss_pred -CCCCC---eEEEcCCCcccccchhHHHHHHH---------Hhhc-------------------CCCeEEEEecCCcccc
Q 010832 305 -GVNIP---LIIVKSDGGFNYASTDLAALWYR---------LNEE-------------------KAEWIIYVTDVGQQLH 352 (499)
Q Consensus 305 -g~~~d---~vl~ksDG~~~Y~t~DiA~~~~k---------~~~~-------------------~~d~~i~V~g~~q~~h 352 (499)
|++++ +|++||||+++|+++|+|||+|| ...+ ++|++|||||++|+.|
T Consensus 311 ~g~~~~~~~~v~~ksdG~~~Y~~~Diay~~~K~~ll~~~fr~~~~~~~~~~~~~wG~~~Pg~~~~~d~~IyV~g~~q~~~ 390 (629)
T 2zue_A 311 LFPDMKNPILVLRRSDGTATYTGKDIAYHLWKFGKIDVDLLYKEWDSTTWTTAPDGKSMPNKFGNANIVINVIGAEQKHP 390 (629)
T ss_dssp TCSSSSCCEEEEECTTSCBCHHHHHHHHHHHHTTCSCCCCEEEECSSSCEEEEEEEEECTTSSCCCSEEEEEEEGGGHHH
T ss_pred cCCccccCceEEEecCCccccchhhHHHHHHHhhcccccccCCcccccccccCCCCCCCCCccCCCCcEEEEEeCcHhhH
Confidence 55556 89999999999999999999994 5444 8999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCC-CCcEEEEEeEEEecCCCCccccccC--CcccHHHHHHHHHHHHHHHHHHhcCCCCCCHH
Q 010832 353 FDMVFSAAKRAGWLSADDST-YPKASHVGFGLVLGEDGKRLRTRFS--EVVRLVDLLDEAKNRSKAVLIERGKDKEWTEE 429 (499)
Q Consensus 353 f~~~~~~~~~lG~~~~~~~~-~~~~~Hv~~g~V~~~~g~KMSkR~G--~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~ 429 (499)
|+|++++++++|+. + +..|.|+.||||+. +|+|||||+| |+|+++||++++.++|++.+.++++ +++++
T Consensus 391 ~~~l~~~l~~lG~~-----~~~~~~~h~~~g~V~~-~~~KMSkr~G~~n~v~l~dLl~e~~~~a~~~~~~~~~--~~~~~ 462 (629)
T 2zue_A 391 QLAIKYALQLLGFE-----DAAANLYHLAYEHVER-PEGKFSGRKGTWVGFTVDEVIQEAVKRARELIEEKNP--ALSDE 462 (629)
T ss_dssp HHHHHHHHHHTTCH-----HHHHTEEEEEECCEEB-TTBCCCTTTTTTTTCBHHHHHHHHHHHHHHHHHHHCT--TSCHH
T ss_pred HHHHHHHHHHcCCC-----CCCCeEEEEEeeeEEc-CCCcccCCCCCCCeeeHHHHHHHHHHHHHHHHHhcCc--ccchh
Confidence 99999999999993 3 45799999999996 5678999999 9999999999999999999999865 58999
Q ss_pred HHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcccCCchhHHHHHHHHHHHHHHHhC
Q 010832 430 ELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSG 489 (499)
Q Consensus 430 ~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~n~~~YlqYa~aR~~silrk~~ 489 (499)
+.+++|+++|++|+||++|+.+++++++|||+.++++++||+|||||||||+||||||++
T Consensus 463 ~~~~~a~~vg~~AvRy~~L~~~~~~~~~Fd~d~~~~~~~~t~~ylqYa~aRi~Silrka~ 522 (629)
T 2zue_A 463 EKAEVAEKVGIGAIRYNLIKYSPDKKIIFRWEDVLNFEGESAPYIQYAHARCSSILRKAE 522 (629)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCTTSCEECCHHHHSCCSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhcChhHhhHHHHhcCCCCCCeecHHHHHHHhcCchHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999974
No 3
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=100.00 E-value=5.6e-89 Score=744.87 Aligned_cols=444 Identities=26% Similarity=0.352 Sum_probs=381.0
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCccccccc-CCCCcccccchHHHHHHhhcCCCCCCCChHHHHHHHHHhCCCCCCeeeE
Q 010832 11 VKRELEKVFDLALKATVPNETDVRPLIAAC-TAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESC 89 (499)
Q Consensus 11 ~~~~~~~~l~~~l~~~~~~~~~~~~~v~~~-~~~~gd~~~~~a~~lak~~~~~~~~~~~p~~iA~~i~~~l~~~~~~~~v 89 (499)
+++.+++.|.+++..... .....+++| +++|||||||+ |.|||.+| ++|++||++|++.|+.++.|++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~gD~~~~~-~~lak~~~------~~P~~iA~~i~~~l~~~~~~~~~ 71 (592)
T 1iq0_A 2 LRRALEEAIAQALKEMGV---PVRLKVARAPKDKPGDYGVPL-FALAKELR------KPPQAIAQELKDRLPLPEFVEEA 71 (592)
T ss_dssp CHHHHHHHHHHHHHTTSC---CCCCCCEECSTTSSCSEEEEC-SHHHHHTT------SCHHHHHHHHHHTCCCCTTEEEE
T ss_pred hHHHHHHHHHHHHHhcCC---CccceeeCCCCCCCCcchhhH-HHHHHHcC------CCHHHHHHHHHHhccccCcEEEE
Confidence 566777888888876422 122335554 78999999995 99999999 99999999999999876789999
Q ss_pred EEecCCeEEEEeChhHHHHHHHH-HHHcCCCCCCCcCCCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeE
Q 010832 90 SVAGPGFVNVVLSKNWMAKNIQK-MLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEV 168 (499)
Q Consensus 90 ~vag~GfiN~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V 168 (499)
+++| |||||+|+++++...+.. ++..++.+ | +|+||||||||+|||||||+|++|+||+|+|+|+++||+|
T Consensus 72 ~~~g-gfiN~~l~~~~~~~~~~~~~~~~~~~~------g-~v~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V 143 (592)
T 1iq0_A 72 VPVG-GYLNFRLRTEALLREALRPKAPFPRRP------G-VVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREV 143 (592)
T ss_dssp EEET-TEEEEEECHHHHHHHHHSCCCCCCCEE------E-EEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEE
T ss_pred EEcC-CEEEEEECHHHHHHHHHHHHHhcCccc------C-eEEEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcCCce
Confidence 9999 999999999977666543 33333221 1 8999999999999999999999999999999999999999
Q ss_pred EEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHHHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHH
Q 010832 169 LRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQI 248 (499)
Q Consensus 169 ~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~ 248 (499)
+++|||||||+||++++.++. +++.+......+...+.++|+++.+.++.+ ++.+++++.+.++|+|+ . +.+
T Consensus 144 ~~~~~i~D~G~q~~~li~~~~-~~g~d~~~~~~~d~~~g~~y~~~~~~~~~~-~~~~~a~~~~~~~e~g~--~----~~~ 215 (592)
T 1iq0_A 144 LVLNYIDDTGRQAAETLFALR-HYGLTWDGKEKYDHFAGRAYVRLHQDPEYE-RLQPAIEEVLHALERGE--L----REE 215 (592)
T ss_dssp EEEEEECTTSHHHHHHHHHHH-HTTCCCCSSSCHHHHHHHHHHHHHHCTTTG-GGHHHHHHHHHHHHTTT--T----HHH
T ss_pred EEEeccCCcchHHHHHHHHHH-HhCCcccCCCCcchhHHHHHHHHHHHHHhh-hHHHHHHHHHHhCCchH--H----HHH
Confidence 999999999999999987654 345432111134566778999998888777 88999999999999998 1 788
Q ss_pred HHHHHHHHHHHHHHcCCeee-eeccccc--cCcHHHHHHHHHHCCCeE-----eecCeEEEEec--CCCCC---eEEEcC
Q 010832 249 CEISRKEFDKVYKRLRVDLE-EKGESFY--NPYIPGVIDELSKQGLVE-----ESQGARVIFIE--GVNIP---LIIVKS 315 (499)
Q Consensus 249 ~~~~~~~~~~~~~~LgI~fd-~~~es~~--~~~v~~~i~~L~~~g~~y-----~~dGa~~~~~~--g~~~d---~vl~ks 315 (499)
++.+++.|+++|++|||+|| |.+||.+ .+.+++++++|+++|++| +.+|++||+++ |++++ +|++||
T Consensus 216 ~~~~~~~~~~~~~~LgI~~D~~~~es~~~~~~~v~~~~~~L~~kG~~y~~~~g~~~G~~~~~~~~~g~~~~l~~~vi~ks 295 (592)
T 1iq0_A 216 VNRILLAQMATMHALNARYDLLVWESDIVRAGLLQKALALLEQSPHVFRPREGKYAGALVMDASPVIPGLEDPFFVLLRS 295 (592)
T ss_dssp HHHHHHHHHHHHHHTTCCCSEEEEHHHHHHTTHHHHHHHHHTTSTTEECCSSSTTTTCEEEECTTTSCSCSCCEEEEECT
T ss_pred HHHHHHHHHHHHHHcCCEeEEeccCCcccccchHHHHHHHHHHCCCcccCcccCcCCCEEEechhcCCCCCCCceEEEec
Confidence 99999999999999999996 6688877 889999999999999999 88999999998 55555 899999
Q ss_pred CCcccccchhHHHHHHH--------Hhhc--------------------CCCeEEEEecCCccccHHHHHHHHHHcCCCC
Q 010832 316 DGGFNYASTDLAALWYR--------LNEE--------------------KAEWIIYVTDVGQQLHFDMVFSAAKRAGWLS 367 (499)
Q Consensus 316 DG~~~Y~t~DiA~~~~k--------~~~~--------------------~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~ 367 (499)
||+++|+++|+|||+|| ...+ ++|++|||||++|..||++++.+++++|+.
T Consensus 296 dG~~~Y~~~D~a~~~~Kl~l~~~~~~~~~~~~p~~r~~w~~~g~~~~~~~~~~~iyV~g~~h~~~~~~~~~~~~alG~~- 374 (592)
T 1iq0_A 296 NGTATYYAKDIAFQFWKMGILEGLRFRPYENPYYPGLRTSAPEGEAYTPKAEETINVVDVRQSHPQALVRAALALAGYP- 374 (592)
T ss_dssp TSCBCHHHHHHHHHHHHTTSSCCCEEEECCCSSCTTCEEEEEEEEECCCCCSEEEEEEESSSCCCHHHHHHHHHHTTCH-
T ss_pred CCceEEecchHHHHHHHhhhhhhhhhhhhhcCcchhhcccccCcccCCCCCCEEEEEEeccHHHHHHHHHHHHHHcCCC-
Confidence 99999999999999994 5434 899999999999999999999999999993
Q ss_pred CCCCC-CCcEEEEEeEEEecCCCCccccccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHH
Q 010832 368 ADDST-YPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYF 446 (499)
Q Consensus 368 ~~~~~-~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~ 446 (499)
+ +..|.|++||||++ +|+|||||+||+|+++||++++.++|++.+.++++ +|+++| ++|+++|++++|||
T Consensus 375 ----~~~~~~~H~~~g~v~~-~g~KMSKr~Gn~v~l~dll~~~~~~~~~~~~~~~~--~~~~~e--~~a~~vg~~aiRyf 445 (592)
T 1iq0_A 375 ----ALAEKAHHLAYETVLL-EGRQMSGRKGLAVSVDEVLEEATRRARAIVEEKNP--DHPDKE--EAARMVALGAIRFS 445 (592)
T ss_dssp ----HHHTTEEEEEECCEEE-TTBCSCC----CCBHHHHHHHHHHHHHHHHHHHCT--TCSCHH--HHHHHHHHHHHHHH
T ss_pred ----CCCCcEEEEEeeEEEc-CCCcccCCCCCccCHHHHHHHHHHHHHHHHHhhCC--CCCcHH--HHHHhhcHHHHHHH
Confidence 4 45799999999985 68899999999999999999999999999998865 466655 99999999999999
Q ss_pred hhcCCCCCCccccHHHHhcccCCchhHHHHHHHHHHHHHHHhCC
Q 010832 447 DLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGK 490 (499)
Q Consensus 447 ~L~~~~~~~~~Fd~~~~~~~~~n~~~YlqYa~aR~~silrk~~~ 490 (499)
+|+++++++++|||++++++++||++||||||+|+|||+||++.
T Consensus 446 ~L~~~~~~~~~Fd~d~~~~~~~~~~~ylqya~aR~~sil~k~~~ 489 (592)
T 1iq0_A 446 MVKTEPKKQIDFRYQEALSFEGDTGPYVQYAHARAHSILRKAGE 489 (592)
T ss_dssp HHHSCTTSCEEECHHHHHCSSSSSHHHHHHHHHHHHHHHHHHCC
T ss_pred HHhcCCCCCCeecHHHHHHHhccchHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999863
No 4
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=100.00 E-value=5e-76 Score=621.82 Aligned_cols=337 Identities=19% Similarity=0.274 Sum_probs=287.5
Q ss_pred EEeChhHHHHHHHHHHHcCCCCCCCcCCCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcc
Q 010832 99 VVLSKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWG 178 (499)
Q Consensus 99 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G 178 (499)
|+|+++++...+.+++..++.++....++++|+||||||||||||||||+|++++||+|||+++++||+|+|+|||||||
T Consensus 1 ~~l~~~~~~~~l~~i~~~~~~yG~~~~~~~~v~vE~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G 80 (464)
T 3fnr_A 1 MSLSKTFLNELANQALTNPNDFTKGEKKQESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAG 80 (464)
T ss_dssp --CCHHHHHHHHHHHHHSGGGTTCCCCCSCEEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCH
T ss_pred CEECHHHHHHHHHHHHHhHHhcCCCCCCCCEEEEEeCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCcc
Confidence 68999999999999998776654332378999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhC-----CC-----CCccccchHHHHHH-HHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHH
Q 010832 179 TQFGMLIEYLFEKF-----PN-----SEDANETAIGELQE-FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQ 247 (499)
Q Consensus 179 ~Qi~~l~~~~~~~~-----~~-----~~~~~~~~i~~l~~-~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~ 247 (499)
+||++|+.++..+| +. ...+.++++.++++ ++.+....+. ++++...+|+.
T Consensus 81 ~Q~g~l~~~~~~~y~~~~~~~~~~~p~~~y~g~~~~~~a~~~~~~~~~~~~------------------~~~~~~~~~~~ 142 (464)
T 3fnr_A 81 NQIYLLGLSILLSVKESILHENVEYPEQYYKGEYIVDLAKEAFEKFGKEFF------------------SEENIPSLADW 142 (464)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCCCCCSSCCCSHHHHHHHHHHHHHHCGGGC------------------SGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCchhhcCccHHHHHHHHHHHhcchhhc------------------CcHHHHHHHHH
Confidence 99999987764322 11 11256677777654 3333232221 14455678999
Q ss_pred HHHHHHHHHHHHHHHcCCeee-eecc-ccccCcHHHHHHHHHHCCCeEeecCeEEEEec--CCCCCeEEEcCCCcccccc
Q 010832 248 ICEISRKEFDKVYKRLRVDLE-EKGE-SFYNPYIPGVIDELSKQGLVEESQGARVIFIE--GVNIPLIIVKSDGGFNYAS 323 (499)
Q Consensus 248 ~~~~~~~~~~~~~~~LgI~fd-~~~e-s~~~~~v~~~i~~L~~~g~~y~~dGa~~~~~~--g~~~d~vl~ksDG~~~Y~t 323 (499)
+++.+++.|+++|++|||+|| |++| |+|. .++++++.|+++|++|++|||+||+++ |+++|+||+||||++||+|
T Consensus 143 ~~~~~l~~~~~~~~~l~V~fD~~~~Ess~~~-~~~~vv~~L~~~g~~~e~dGa~~~~~~~~g~~~~~vl~ksDG~~~Y~t 221 (464)
T 3fnr_A 143 AKDKMLVLIKQNLEQAKIKIDSYVSERSYYD-ALNATLESLKEHKGIYEQEGKIWLASSQKGDEKDRVIIREDGRGTYLA 221 (464)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSCEEEGGGGST-THHHHHHHHHHTTCEEEETTEEEECGGGGTCSSCEEEECTTSCBCHHH
T ss_pred HHHHHHHHHHHHHHHhCCCceeecCHHHHHH-HHHHHHHHHHHCCCEEEeCCeEEEEecccCCCCceEEEeCCCceehhh
Confidence 999999999999999999996 7899 6777 999999999999999999999999987 6778999999999999999
Q ss_pred hhHHHHHHHHhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEE-ecCCCC--ccccccCCcc
Q 010832 324 TDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLV-LGEDGK--RLRTRFSEVV 400 (499)
Q Consensus 324 ~DiA~~~~k~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V-~~~~g~--KMSkR~G~~v 400 (499)
+|||||.+|+. .++|++|||+|++|+.||++++++++++|+.+ +.+.|+.+||| ++++|+ |||||+||+|
T Consensus 222 ~DiA~~~~r~~-~~~d~~Iyv~G~dq~~~f~~l~~~l~~lG~~~------~~~~h~~~g~V~l~~dG~~~KMSKr~Gn~v 294 (464)
T 3fnr_A 222 ADIVYHKDKMS-RGYGKCINIWGADHHGYIPRMKAAMEFLGFDS------NNLEIILAQMVSLLKDGEPYKMSKRAGNFI 294 (464)
T ss_dssp HHHHHHHHHHT-SSCSEEEEEEEGGGGGGHHHHHHHHHTTTCCG------GGEEEEEECCEEEEETTEECCC---CCSSC
T ss_pred HHHHHHHHHHH-cCCCeEEEEecCcHHHHHHHHHHHHHHcCCCc------cceEEEEeeeEEecCCCcccCCcCcCCCCC
Confidence 99999999994 68999999999999999999999999999952 37899999999 456775 9999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcccC-CchhHHHHHHH
Q 010832 401 RLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKG-NTAVYLLYAHA 479 (499)
Q Consensus 401 ~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~-n~~~YlqYa~a 479 (499)
+++|++++ +|++++||++|+.++.++++|||+.++++.+ |+++||||||+
T Consensus 295 ~l~dll~~-----------------------------~g~dalRy~~l~~~~~~d~~Fd~~~~~~~~n~npv~YlqYa~a 345 (464)
T 3fnr_A 295 LMSDVVDE-----------------------------IGSDALRYIFLSKKCDTHLEFDISDLQKEDSSNPVYYINYAHA 345 (464)
T ss_dssp BHHHHHHH-----------------------------HCHHHHHHHTTSSCTTSCEEEEGGGGGCCSTTSHHHHHHHHHH
T ss_pred CHHHHHhh-----------------------------ccHHHHHHHHHhcCCCCCCccCHHHHHHHhCCCHHHHHHHHHH
Confidence 99999998 5999999999999999999999999999854 44459999999
Q ss_pred HHHHHHHHhCC
Q 010832 480 RICSIIRKSGK 490 (499)
Q Consensus 480 R~~silrk~~~ 490 (499)
|+|||+||++.
T Consensus 346 Ri~silrk~~~ 356 (464)
T 3fnr_A 346 RIHQVFAKAGK 356 (464)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHhhc
Confidence 99999999854
No 5
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=100.00 E-value=1.2e-38 Score=337.75 Aligned_cols=262 Identities=15% Similarity=0.181 Sum_probs=208.9
Q ss_pred CCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHH
Q 010832 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (499)
Q Consensus 126 ~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~ 205 (499)
.+++|.+++|||||+|++||||+|++|+||+|+|+|++.||+|.++++++|+|..|.
T Consensus 19 ~~~~v~~yv~gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~----------------------- 75 (461)
T 1li5_A 19 HAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKII----------------------- 75 (461)
T ss_dssp STTEEEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHH-----------------------
T ss_pred CCCCeeEEEcCCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHH-----------------------
Confidence 467799999999999999999999999999999999999999999999999985332
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCee-eeec-cccccCcHHHHH
Q 010832 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKG-ESFYNPYIPGVI 283 (499)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~f-d~~~-es~~~~~v~~~i 283 (499)
.++. +.|. .|+++++.+.+.|+++|++|||.+ |+++ .|.|.+.+.+++
T Consensus 76 -----~~A~--------------------~~g~-----~~~~~~~~~~~~f~~~~~~LgI~~~d~~~r~t~~~~~~~~~i 125 (461)
T 1li5_A 76 -----KRAN--------------------ENGE-----SFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELT 125 (461)
T ss_dssp -----HHHH--------------------HTTC-----CHHHHHHHHHHHHHHHHHHTTCCCCSBCCBGGGCHHHHHHHH
T ss_pred -----HHHH--------------------HcCC-----CHHHHHHHHHHHHHHHHHHcCCCCCcccccccchHHHHHHHH
Confidence 1111 1122 267889999999999999999998 7654 577888899999
Q ss_pred HHHHHCCCeEee-cCeEEEEecC----------------------------CCCCeEEEcC--CCcccccchh----HHH
Q 010832 284 DELSKQGLVEES-QGARVIFIEG----------------------------VNIPLIIVKS--DGGFNYASTD----LAA 328 (499)
Q Consensus 284 ~~L~~~g~~y~~-dGa~~~~~~g----------------------------~~~d~vl~ks--DG~~~Y~t~D----iA~ 328 (499)
++|.++|++|+. +|++||+++. +..|+++||+ +|.++|.+++ .+|
T Consensus 126 ~~L~~~G~aY~~~~g~v~f~~~~~~~yg~lsg~~~~~l~~g~rv~~~~~k~~p~Df~lwk~~~~g~~~w~s~WG~g~PgW 205 (461)
T 1li5_A 126 EQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGW 205 (461)
T ss_dssp HHHHHTTSEEECTTSCEEECGGGCTTTTTTTTC----------------CCSTTCEEEEEECCTTSCCBCCTTCSEEECS
T ss_pred HHHHHCCCEEEecCCCEEEecccccccccccCCCHHHhhcCCcccchhcccCccceEEEccCCCCCCcccCCCCCcCCCc
Confidence 999999999999 9999997541 1148899986 7999998753 112
Q ss_pred H------HHHHhhcCCCeEEEEecCCccccHHHH-HHHH--HH-cCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCC
Q 010832 329 L------WYRLNEEKAEWIIYVTDVGQQLHFDMV-FSAA--KR-AGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSE 398 (499)
Q Consensus 329 ~------~~k~~~~~~d~~i~V~g~~q~~hf~~~-~~~~--~~-lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~ 398 (499)
| .+++ ++. .++|++.+.+..|+++ ..++ .+ +|+ +++..|.|. |+|+. +|+|||||+||
T Consensus 206 hiecsam~~~~--lg~--~~dih~gG~Dl~fpH~~~~~aq~~a~~g~-----~~~~~~~h~--g~v~~-~G~KMSKS~GN 273 (461)
T 1li5_A 206 HIECSAMNCKQ--LGN--HFDIHGGGSDLMFPHHENEIAQSTCAHDG-----QYVNYWMHS--GMVMV-DREKMSKSLGN 273 (461)
T ss_dssp SHHHHHHHHHH--HCS--SEEEEECBGGGTTTHHHHHHHHHHHHSSS-----CCEEEECCB--CCEEE-TTBCCCGGGTC
T ss_pred cchhHHHHHHH--hCC--CceEEeccCccCchHHHHHHHHHHHhcCC-----CCCcEEEEe--eEEEE-CCeEccccCCC
Confidence 2 2222 333 3566766666555543 2333 33 366 567789998 56774 79999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcccCCchhHHHHHH
Q 010832 399 VVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAH 478 (499)
Q Consensus 399 ~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~n~~~YlqYa~ 478 (499)
+|++.|++++ +|++++||++|+.+++++++|+++.+.+. ++++
T Consensus 274 ~v~~~dll~~-----------------------------~g~dalR~~ll~~~~~~~~~fs~~~l~~~--------~~~l 316 (461)
T 1li5_A 274 FFTVRDVLKY-----------------------------YDAETVRYFLMSGHYRSQLNYSEENLKQA--------RAAL 316 (461)
T ss_dssp CCBHHHHHTT-----------------------------SCHHHHHHHHHSSCTTSCEEECHHHHHHH--------HHHH
T ss_pred ccChhHHhhh-----------------------------CCHHHHHHHHHcCCcCCCCCCCHHHHHHH--------HHHH
Confidence 9999999987 69999999999999999999999998876 7889
Q ss_pred HHHHHHHHHhC
Q 010832 479 ARICSIIRKSG 489 (499)
Q Consensus 479 aR~~silrk~~ 489 (499)
.|+.+++++++
T Consensus 317 ~rl~n~~~~~~ 327 (461)
T 1li5_A 317 ERLYTALRGTD 327 (461)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHHHhh
Confidence 99999998764
No 6
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=1.1e-38 Score=335.27 Aligned_cols=251 Identities=18% Similarity=0.162 Sum_probs=206.8
Q ss_pred CCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHH
Q 010832 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (499)
Q Consensus 126 ~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~ 205 (499)
.+++|.+++|+|||++++||||+|++|++|+|+|+|++.||+|.++.+++|+|..|..-+
T Consensus 22 ~~~~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A-------------------- 81 (462)
T 3tqo_A 22 ESGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRA-------------------- 81 (462)
T ss_dssp STTEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHH--------------------
T ss_pred CCCeEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHH--------------------
Confidence 467899999999999999999999999999999999999999999999999875433111
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeee-ee-ccccccCcHHHHH
Q 010832 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EK-GESFYNPYIPGVI 283 (499)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd-~~-~es~~~~~v~~~i 283 (499)
.+ .|. .|+++++.+.+.|++++++|||.++ +. ..+.|.+.+.+++
T Consensus 82 --------~~--------------------~g~-----~~~e~a~~~~~~f~~d~~~LgI~~d~~~praTe~i~~i~~~i 128 (462)
T 3tqo_A 82 --------GE--------------------NKE-----SPAALAERFIQILHEDEKALRVLSPDQEPRATQYVPEIIKLI 128 (462)
T ss_dssp --------HH--------------------TTS-----CHHHHHHHHHHHHHHHHHHHTCCCCSBCCBGGGCHHHHHHHH
T ss_pred --------HH--------------------cCC-----CHHHHHHHHHHHHHHHHHHcCCCCCccccChhhHHHHHHHHH
Confidence 10 111 2577899999999999999999994 44 4588888999999
Q ss_pred HHHHHCCCeEee-cCeEEEEec-----C-----------------------CCCCeEEEcC--CCcccccchh----HHH
Q 010832 284 DELSKQGLVEES-QGARVIFIE-----G-----------------------VNIPLIIVKS--DGGFNYASTD----LAA 328 (499)
Q Consensus 284 ~~L~~~g~~y~~-dGa~~~~~~-----g-----------------------~~~d~vl~ks--DG~~~Y~t~D----iA~ 328 (499)
++|.++|++|+. +|.+||+++ | ++.|++|||. +|.|.|.+++ .+|
T Consensus 129 ~~L~ekG~aY~~~~g~Vyfdv~~~~~yg~Ls~~~~~~~~~g~r~~~~~~K~~p~DF~LWK~~k~~ep~W~spwG~GrPGW 208 (462)
T 3tqo_A 129 QKLLDNQYAYTGQNGDVFFDVRRFKDYGKLSHRHLDELQAGARVEVSDSKRDPLDFVLWKKAKPGEPKWDSPWGEGRPGW 208 (462)
T ss_dssp HHHHHHTSEEECTTSCEEECTTTCTTTTTTTTCSCC------------CCSSTTCEEEEEECCTTSCCBCCTTCSEEECH
T ss_pred HHHHHCCCEEEecCCcEEeccccccccccccCCChHHhhccCccccccccCCccccceeeecCCCCCcccCCCCCCCCCC
Confidence 999999999998 799999874 1 1248999984 7889999986 567
Q ss_pred HHHHHh--hcCCCeEEEEecCCccccHHHHH-HHHH--Hc-CCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccH
Q 010832 329 LWYRLN--EEKAEWIIYVTDVGQQLHFDMVF-SAAK--RA-GWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRL 402 (499)
Q Consensus 329 ~~~k~~--~~~~d~~i~V~g~~q~~hf~~~~-~~~~--~l-G~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l 402 (499)
|+.+.. ...+...|+|+|+++++.||++. .+++ ++ |. +++..|+|. |+|. .+|+|||||+||+|++
T Consensus 209 HiEcsam~~~~lG~~~dih~gG~Dl~FpHheneiaqs~a~~g~-----p~~~~w~H~--g~v~-~~G~KMSKSlGN~i~~ 280 (462)
T 3tqo_A 209 HIECSAMSSSILGQPFDIHGGGLDLKFPHHENEIAQSEAGEEK-----PFVKLWMHA--GLLE-INKEKMSKSLGNIISI 280 (462)
T ss_dssp HHHHHHHHHHHHCSSEEEEEEEGGGTTTHHHHHHHHHHHHHSS-----CCEEEEEEE--CCEE-ETTEECCTTTTCCCBH
T ss_pred ceehHHHHHHhcCCCeEEEccccccccHHHHhHHHHHHHHcCC-----CcceEEEEc--cEEe-cCCcCccccCCCcccH
Confidence 877632 11223458999999999998764 3343 32 43 688999998 6677 5899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcc
Q 010832 403 VDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLND 466 (499)
Q Consensus 403 ~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~ 466 (499)
.|++++ +|++++||++|+.+++++++|+++.+.+.
T Consensus 281 ~dll~~-----------------------------~g~dalR~~lls~~yr~~l~fs~~~l~~a 315 (462)
T 3tqo_A 281 REALKE-----------------------------SDVEVLRYFLLSGHYRNPLSYSKENLENG 315 (462)
T ss_dssp HHHHHH-----------------------------SCHHHHHHHHHHSCTTSCEEECHHHHHHH
T ss_pred HHHHhh-----------------------------cChHHhhhhhccCCCCCCcCcCHHHHHHH
Confidence 999987 69999999999999999999999998765
No 7
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=100.00 E-value=1.7e-36 Score=320.19 Aligned_cols=258 Identities=17% Similarity=0.145 Sum_probs=187.0
Q ss_pred eEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHHHH
Q 010832 129 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 208 (499)
Q Consensus 129 ~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l~~ 208 (499)
+|-++.|+|||+|++||||+|++|++|+|+|+|++.||+|.++.+|+|+|+|.+.- + .++++|.
T Consensus 42 ~v~~YvcgPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~----------D--ehddKI~---- 105 (501)
T 3sp1_A 42 NVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDL----------D--DGEDKVA---- 105 (501)
T ss_dssp CEEEEECCCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC----------------------------
T ss_pred cceEEeCCCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCC----------C--CCCcHHH----
Confidence 89999999999999999999999999999999999999999999999999987621 1 1345443
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeee-ec-cccccCcHHHHHHHH
Q 010832 209 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE-KG-ESFYNPYIPGVIDEL 286 (499)
Q Consensus 209 ~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~-~~-es~~~~~v~~~i~~L 286 (499)
+++. + .|. .|+++++.+...|++++++|||.+++ .+ .+.|.+.+.+++++|
T Consensus 106 --~~A~--------------~------~g~-----~~~e~a~~~~~~f~~d~~~Lgi~~d~~~~~~t~hi~~v~~~i~~L 158 (501)
T 3sp1_A 106 --KTAR--------------E------KGL-----TVYEISEFFTEAFFNDCRKLNIVYPDKVLVASKHIPIMIEVVKIL 158 (501)
T ss_dssp -----------------------------C-----CHHHHHHHHHHHHHHHHHHTTCCCCSEEEEGGGCHHHHHHHHHHH
T ss_pred --HHHH--------------H------cCC-----CHHHHHHHHHHHHHHHHHHcCCCCCCcccCcchHHHHHHHHHHHH
Confidence 1111 1 111 25678999999999999999999954 33 477888899999999
Q ss_pred HHCCCeEeecCeEEEEec-----C------------------------CCCCeEEEcC-----CCcccccchh----HHH
Q 010832 287 SKQGLVEESQGARVIFIE-----G------------------------VNIPLIIVKS-----DGGFNYASTD----LAA 328 (499)
Q Consensus 287 ~~~g~~y~~dGa~~~~~~-----g------------------------~~~d~vl~ks-----DG~~~Y~t~D----iA~ 328 (499)
.++|++|+.+|.+||+++ | +..|++|||. .|.+.|.+++ .+|
T Consensus 159 ~~kG~aY~~~g~Vyf~v~~f~~yG~ls~~~~~~~~~~g~r~~~~~~K~~p~Df~lWk~~p~~~~~~~~W~spwG~GrPGW 238 (501)
T 3sp1_A 159 EEKKITYFSNGNVYFDTSCFKSYGEMAGIDLIDKDMTLPRVDVDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSW 238 (501)
T ss_dssp HHTTCEEEETTEEEECGGGCTTTTTTTC-----------------CCSSTTCEEEEEECCC-----CCBCCTTCSEEECH
T ss_pred HHCCCEEEeCCcEEecCCccCCccccCCCChhhhhccCCccCcccccCCchhhHhcCCCCCCCCCCceecCCCCCCCCCc
Confidence 999999999999999764 1 1247899986 4778888875 357
Q ss_pred HHHHHh----hcCCCeEEEEecCCccccHHHHH-HHH--HHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCccc
Q 010832 329 LWYRLN----EEKAEWIIYVTDVGQQLHFDMVF-SAA--KRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVR 401 (499)
Q Consensus 329 ~~~k~~----~~~~d~~i~V~g~~q~~hf~~~~-~~~--~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~ 401 (499)
|+.+.. .++ ..++|++++.+..|+++. .++ +++.-. +++..|+|. |+|. .+|+|||||+||+|+
T Consensus 239 hiEcsam~~~~lg--~~~DIH~gG~DLifpHheneiAqs~a~~g~----~~~~~w~H~--g~v~-~~G~KMSKSlGN~it 309 (501)
T 3sp1_A 239 HLECAAMNLEYFK--DALDIHLGGVDHIGVHHINEIAIAECFLNK----KWCDVFVHG--EFLI-MDYNKMSKSRGNFIT 309 (501)
T ss_dssp HHHHHHHHHHHTT--TCCCEEEEEGGGTTTHHHHHHHHHHHHHTS----CCCSEEEEE--CCEE-CC----------CCC
T ss_pred hHHHHHHHHHHcC--CCceEEeeccccccchHHHHHHHHHHccCC----CCCeEEEEe--eeEe-eCCeEccccCCCcCC
Confidence 766521 133 336678888888777653 333 444222 689999998 6687 589999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcc
Q 010832 402 LVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLND 466 (499)
Q Consensus 402 l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~ 466 (499)
+.|++++. +|++++||++|+.+++++++|+++.+.+.
T Consensus 310 ~~dll~~g----------------------------yg~d~lR~~lls~~yr~~l~fs~~~l~~a 346 (501)
T 3sp1_A 310 VKDLEDQN----------------------------FSPLDFRYLCLTSHYRNQLKFSLDNLQAS 346 (501)
T ss_dssp HHHHHHTT----------------------------CCHHHHHHHHHTSCTTSCEECCHHHHHHH
T ss_pred HHHHHhcC----------------------------CCHHHHHHHHHhccCCCCCccCHHHHHHH
Confidence 99999873 59999999999999999999999988765
No 8
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=100.00 E-value=1.8e-33 Score=294.80 Aligned_cols=250 Identities=13% Similarity=0.069 Sum_probs=177.2
Q ss_pred CceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHH
Q 010832 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (499)
Q Consensus 127 ~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l 206 (499)
+.++.++.|+|||+|++||||+|++++||+|+|+|++.||+|.++++++|+|..+...+.
T Consensus 37 ~~~v~~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~-------------------- 96 (414)
T 3c8z_A 37 GPTATMYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAE-------------------- 96 (414)
T ss_dssp CSEEEEEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHH--------------------
T ss_pred CCCceEEeCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHH--------------------
Confidence 567999999999999999999999999999999999999999999999998864432211
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCe-eee-eccccccCcHHHHHH
Q 010832 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVD-LEE-KGESFYNPYIPGVID 284 (499)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~-fd~-~~es~~~~~v~~~i~ 284 (499)
+ .|. .|+++++.+.+.|+++|++|||. +|+ .+++.|.+.+.++++
T Consensus 97 ----------------------~------~g~-----~~~~~~~~~~~~~~~~~~~Lgi~~~d~~~r~t~~~~~~~~~~~ 143 (414)
T 3c8z_A 97 ----------------------R------DGI-----DWRTLGDRETQLFREDMAALRVLPPHDYVAATDAIAEVVEMVE 143 (414)
T ss_dssp ----------------------H------HTC-----CHHHHHHHHHHHHHHHHHHTTCCCCSEEEEGGGCHHHHHHHHH
T ss_pred ----------------------H------cCC-----CHHHHHHHHHHHHHHHHHHcCCCCCcceecccchHHHHHHHHH
Confidence 0 011 24567889999999999999999 875 446668778999999
Q ss_pred HHHHCCCeEeec----CeEEEEecC-----C---------------------------CCCeEEEc--CCCcccccchh-
Q 010832 285 ELSKQGLVEESQ----GARVIFIEG-----V---------------------------NIPLIIVK--SDGGFNYASTD- 325 (499)
Q Consensus 285 ~L~~~g~~y~~d----Ga~~~~~~g-----~---------------------------~~d~vl~k--sDG~~~Y~t~D- 325 (499)
+|.++|++|+.+ |++||+++. . ..|+++|| .+|.+.|.++.
T Consensus 144 ~L~~kG~~Y~~~~~~e~~~~f~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~k~~~~D~~lWk~~~pg~~~Wda~~g 223 (414)
T 3c8z_A 144 KLLASGAAYIVEDAEYPDVYFRADATAQFGYESGYDRDTMLTLFAERGGDPDRPGKSDQLDALLWRAERPGEPSWPSPFG 223 (414)
T ss_dssp HHHHHTSEEECSCSSCCCEEECTTSSTTTTTTTCCCHHHHHHHHHHTTCCTTCTTCSSTTCEEEEEECCTTSCCBCCTTC
T ss_pred HHHHCCCEEeccCCcCCCEEEEchhhhhhHhhcCCCHHHHHHHHhhccccccccccCCcchhhhcCCCCCCCCCCCCCCC
Confidence 999999999988 999998751 0 02456776 45767665532
Q ss_pred ---HHHHHHHH----hhcCCCeEEEEe--cCCccc-cHHHHHHHHHHc-CCCCCCCCCCCcEEEEEeEEEecCCCCcccc
Q 010832 326 ---LAALWYRL----NEEKAEWIIYVT--DVGQQL-HFDMVFSAAKRA-GWLSADDSTYPKASHVGFGLVLGEDGKRLRT 394 (499)
Q Consensus 326 ---iA~~~~k~----~~~~~d~~i~V~--g~~q~~-hf~~~~~~~~~l-G~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSk 394 (499)
.+||+.+. ..++ ..++|+ |.|+.. |+....+.+.++ |.. ++...|.|. |+|. .+|+||||
T Consensus 224 ~g~pgWhiec~a~~~~~~g--~~~di~~~G~D~~~~H~~~~~a~~~a~~g~~----~~~~~~~h~--g~v~-~~G~KMSK 294 (414)
T 3c8z_A 224 RGRPGWHVECSAIALTRIG--TGLDIQGGGSDLIFPHHEYSAAHAESVTGER----RFARHYVHT--GMIG-WDGHKMSK 294 (414)
T ss_dssp SEEECHHHHHHHHHHHHTC--SCEEEEEEEGGGTTTHHHHHHHHHHHHHCCS----CSEEEEEEE--CCBC---------
T ss_pred CCCCCccchhHHHHHHhcC--CCceEEEeccccccHHHHHHHHHHHHhcCCC----CcCeEEEEc--CEEe-cCCeEccc
Confidence 13443321 1122 345555 555432 333333445554 763 456678887 6677 47999999
Q ss_pred ccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcc
Q 010832 395 RFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLND 466 (499)
Q Consensus 395 R~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~ 466 (499)
|+||+|++.|+++++ +|++++||++|+.+++++++|+++.+.+.
T Consensus 295 S~GN~v~~~~ll~~g----------------------------~g~D~lR~~ll~~~~~~d~~fs~~~l~~~ 338 (414)
T 3c8z_A 295 SRGNLVLVSQLRAQG----------------------------VDPSAIRLGLFSGHYREDRFWSNEVLDEA 338 (414)
T ss_dssp -----CBHHHHHHTT----------------------------CCHHHHHHHHHTSCTTSCBCCCHHHHHHH
T ss_pred ccCCcCCHHHHhhcc----------------------------CCcchheeEEEecCcCCCCCcCHHHHHHH
Confidence 999999999999873 59999999999999999999999988765
No 9
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=100.00 E-value=1.6e-33 Score=304.86 Aligned_cols=269 Identities=14% Similarity=0.136 Sum_probs=192.1
Q ss_pred CceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHH
Q 010832 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (499)
Q Consensus 127 ~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l 206 (499)
++++.|....|+|||++||||+|++++||+|+|++|++||+|.++++++|+|.++...+... +
T Consensus 24 ~~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~-----------g------ 86 (536)
T 4dlp_A 24 REKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKE-----------G------ 86 (536)
T ss_dssp CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHH-----------T------
T ss_pred CCCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHc-----------C------
Confidence 45899999999999999999999999999999999999999999999999999876443210 0
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeee-ecc--ccccCcHHHHH
Q 010832 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE-KGE--SFYNPYIPGVI 283 (499)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~-~~e--s~~~~~v~~~i 283 (499)
.+ ++++++.+.+.|+++|++|||++|. ..+ ..|.+.+.+++
T Consensus 87 ------------~~------------------------~~~~~~~~~~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~ 130 (536)
T 4dlp_A 87 ------------IT------------------------PRDLADRNTSAFRRMAEVLNSSNDDYIRTSEERHYKASQAIW 130 (536)
T ss_dssp ------------SC------------------------HHHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHHH
T ss_pred ------------CC------------------------HHHHHHHHHHHHHHHHHHcCCCCCcceeCCCHHHHHHHHHHH
Confidence 11 2456788889999999999999964 333 34778899999
Q ss_pred HHHHHCCCeEeecCeEEEEec------------C----------------------------------------------
Q 010832 284 DELSKQGLVEESQGARVIFIE------------G---------------------------------------------- 305 (499)
Q Consensus 284 ~~L~~~g~~y~~dGa~~~~~~------------g---------------------------------------------- 305 (499)
++|.++|++|+.++.+|+... |
T Consensus 131 ~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~~~g~~c~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~i~P~ 210 (536)
T 4dlp_A 131 QAMVANGDIYKGGYAGWYSVRDEAYYGEEETEVRADGVRYGPQGTPVEWVEEESYFFRLSAYQDKLLDLYENNPGFIMPA 210 (536)
T ss_dssp HHHHHTTCEEEEEEEEEEETTTTEEECGGGCEECTTSCEECTTSSBCEEEEEEEEEECGGGGHHHHHHHHHHCTTSEESH
T ss_pred HHHHHCCCEEEeceeeeecCCcCcccCHHHhhcCCCCCcccCCCCcceEEeccceEEecHHHHHHHHHHHHhCCCccCcH
Confidence 999999999998887775431 0
Q ss_pred ------------CCCCeEEEcCC-------------CcccccchhHHHHH---H-----HHhh-cCCCeEEEEecCCccc
Q 010832 306 ------------VNIPLIIVKSD-------------GGFNYASTDLAALW---Y-----RLNE-EKAEWIIYVTDVGQQL 351 (499)
Q Consensus 306 ------------~~~d~vl~ksD-------------G~~~Y~t~DiA~~~---~-----k~~~-~~~d~~i~V~g~~q~~ 351 (499)
...|..|.|++ ...+|+..+++|.. | ++.. |..| ++++|.||..
T Consensus 211 ~~~~~~~~~l~~~l~D~~ISR~~~~WGipiP~~~~~v~yvWfda~~~y~s~~~~~~~~~~~~~~~p~d--v~~~G~D~~~ 288 (536)
T 4dlp_A 211 ERRNEIVSFVKSGLKDLSISRTTFDWGIPVPGDEKHVMYVWVDALTNYITALGYPDTTDERWAYWPAN--AHIIGKDISR 288 (536)
T ss_dssp HHHHHHHHHHHTCCCCEECEEC--CCSCBCTTCTTSEECHHHHHHHHHHHTTTTTCTTSGGGGGCSCS--EEEEEGGGHH
T ss_pred HHHHHHHHHHhcCCCccCCccCCCcCCeeCCCCCCCceEEeeCCcHHHHHhcCCCCCchHHHhhCCcc--eEEeechHHH
Confidence 11345555642 12344555555521 1 1211 3334 8899999865
Q ss_pred cHHHHH--HHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHH
Q 010832 352 HFDMVF--SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEE 429 (499)
Q Consensus 352 hf~~~~--~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~ 429 (499)
|..++ +.+.++|+. +....+.| |+|+. +|+|||||+||+|++.|++++
T Consensus 289 -fh~~~~~a~l~a~g~~----~~~~v~~h---g~v~~-~G~KMSKS~GNvi~p~d~i~~--------------------- 338 (536)
T 4dlp_A 289 -FHAVYWPAFLMSAQLP----LPKRVFAH---GFLFN-RGEKMSKSVGNVIDPFELVER--------------------- 338 (536)
T ss_dssp -HHHTHHHHHHHHTTCC----CCSCEEEE---CCEEC-------------CCHHHHHHH---------------------
T ss_pred -HHHHHHHHHHHHCCCC----CCcEEEee---eeEee-CCceecccCCCCCCHHHHHHH---------------------
Confidence 55544 556678884 23333333 77874 899999999999999999998
Q ss_pred HHHHHHHHhhhhHHHHHhhc-CCCCCCccccHHHHhcc-cCCchhHHHHHHHHHHHHHHHh
Q 010832 430 ELEQTAEAVGYGAAKYFDLK-NNRLTNYTFSFDQMLND-KGNTAVYLLYAHARICSIIRKS 488 (499)
Q Consensus 430 ~~~~~a~~vg~~airy~~L~-~~~~~~~~Fd~~~~~~~-~~n~~~YlqYa~aR~~silrk~ 488 (499)
+|++++||++++ ..+.++++||++.+.+. +.+...++++++.|+++++.+.
T Consensus 339 --------~GaDalR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~~ 391 (536)
T 4dlp_A 339 --------YGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNADLANDLGNLAQRSLSMIAKN 391 (536)
T ss_dssp --------HCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_pred --------cCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 699999999999 78899999999999774 3344557899999999998875
No 10
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=100.00 E-value=5.2e-33 Score=302.22 Aligned_cols=270 Identities=17% Similarity=0.136 Sum_probs=200.2
Q ss_pred CCCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHH
Q 010832 125 LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIG 204 (499)
Q Consensus 125 ~~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~ 204 (499)
.+++++.|...+|||||++||||+|++++||+|+|++|++||+|.++++++|+|.++...+.. .+
T Consensus 23 ~~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~-----------~g---- 87 (564)
T 3kfl_A 23 KKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAK-----------QG---- 87 (564)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHH-----------TT----
T ss_pred cCCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHH-----------cC----
Confidence 456889999999999999999999999999999999999999999999999999987644321 00
Q ss_pred HHHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeee-cc--ccccCcHHH
Q 010832 205 ELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK-GE--SFYNPYIPG 281 (499)
Q Consensus 205 ~l~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~-~e--s~~~~~v~~ 281 (499)
.+ ++++++.+.+.|+++|++|||+||.+ .. ..|.+.+++
T Consensus 88 --------------~~------------------------p~~~~~~~~~~~~~~~~~lgi~~D~~~~t~~~~~~~~v~~ 129 (564)
T 3kfl_A 88 --------------VS------------------------PMDFTTSVSSEFKQCFQEMNYDMNYFIRTTNPTHEKLVQD 129 (564)
T ss_dssp --------------CC------------------------HHHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHH
T ss_pred --------------CC------------------------HHHHHHHHHHHHHHHHHHcCCCCCccccCCCHHHHHHHHH
Confidence 11 13468888899999999999999743 33 357788999
Q ss_pred HHHHHHHCCCeEeecCeEEEEec------------C--------------------------------------------
Q 010832 282 VIDELSKQGLVEESQGARVIFIE------------G-------------------------------------------- 305 (499)
Q Consensus 282 ~i~~L~~~g~~y~~dGa~~~~~~------------g-------------------------------------------- 305 (499)
++++|.++|++|+.++.+|+... |
T Consensus 130 ~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~~~~~~~~~g~~c~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~ 209 (564)
T 3kfl_A 130 IWKKLAAKGDIYLGKYEGWYSVSDESFLTAQNVADGVDRDGKPCKVSLESGHVVTWVEEENYMFRLSAFRERLLKYFHDH 209 (564)
T ss_dssp HHHHHHHHTCEEEEEEEEEEETTTTEEECGGGEEEEECTTSCEEEEETTTSCBCEEEEEEEEEECGGGGHHHHHHHHHHC
T ss_pred HHHHHHHCCCEEEeeeeEEecCCcCCCCCHHHhccCcCCCCCEeccccCCCCccEEEecceeEEEHHHHHHHHHHHHHhC
Confidence 99999999999987666665321 0
Q ss_pred -------------------CCCCeEEEc---CC-----------Ccccccchh-----HHHHHH---H---------H--
Q 010832 306 -------------------VNIPLIIVK---SD-----------GGFNYASTD-----LAALWY---R---------L-- 333 (499)
Q Consensus 306 -------------------~~~d~vl~k---sD-----------G~~~Y~t~D-----iA~~~~---k---------~-- 333 (499)
...|..|.| ++ +...|.--| ++...| + +
T Consensus 210 ~~~i~P~~~~~~~~~wl~~gl~D~~ISR~~~~~~~WGipiP~~~~~v~yVWfDa~~~y~s~~~~~~~~~~~~~~~~~~~~ 289 (564)
T 3kfl_A 210 PNCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIPVPGDERHCIYVWLDALFNYYTGALTRVATDGTETLDEDHHA 289 (564)
T ss_dssp TTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTEEEEEECHHHHHHTHHHHHHHEEECTTSCEEECSSSTT
T ss_pred CCccCCHHHHHHHHHHHhCCCCCccccCcCCCCCCCCeecCCCCCCEEEEeccCcHHHHHHhCccccccccccchhcchh
Confidence 001223333 11 111121112 121111 1 1
Q ss_pred h-hcCCCeEEEEecCCccccHHHHH--HHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccHHHHHHHHH
Q 010832 334 N-EEKAEWIIYVTDVGQQLHFDMVF--SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAK 410 (499)
Q Consensus 334 ~-~~~~d~~i~V~g~~q~~hf~~~~--~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~dll~e~~ 410 (499)
. .|.. .++++|.||.. |..++ +.+.++|+. +. ..+... |+|. .+|+|||||+||+|++.|++++
T Consensus 290 ~~~wp~--dv~~~GkDii~-FH~~~wpa~L~a~g~~----~~-~~v~~h--g~v~-~~G~KMSKS~GNvV~p~d~i~~-- 356 (564)
T 3kfl_A 290 LNRWPA--DVHVVGKDILK-FHAIYWPAFLMSAELP----LP-ERLVSH--GWWT-KDHKKISKSLGNAFDPVEKAKE-- 356 (564)
T ss_dssp TTCCSC--SEEEEEGGGHH-HHHTHHHHHHHHTTCC----CC-SCEEEE--CCEE-ETTEECCTTTTCCCCHHHHHHH--
T ss_pred hhcCcc--ceEEEeecccc-hHHHHHHHHHHhCCCC----CC-cEEEEc--ccEe-eCCccccccCCCCCCHHHHHHH--
Confidence 1 1222 38899999876 55554 566788984 22 333333 7785 7899999999999999999998
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhc-CCCCCCccccHHHHhc-ccCCchhHHHHHHHHHHHHHHH
Q 010832 411 NRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLK-NNRLTNYTFSFDQMLN-DKGNTAVYLLYAHARICSIIRK 487 (499)
Q Consensus 411 ~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~-~~~~~~~~Fd~~~~~~-~~~n~~~YlqYa~aR~~silrk 487 (499)
+|++++||++++ ..+.++++||++.+.+ .+.+...+|+++++|+++++.+
T Consensus 357 ---------------------------~G~DalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~ 408 (564)
T 3kfl_A 357 ---------------------------FGIDALKYFLMRESNFQDDGDYSDKNMVARLNGELADTLGNLVSRCVAPKIN 408 (564)
T ss_dssp ---------------------------HCHHHHHHHHHHHCCSSCCEECCHHHHHHHHHHTTTTTHHHHHHHHHCTTTS
T ss_pred ---------------------------cCcHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 699999999999 7889999999999987 4667888999999999998874
No 11
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=99.98 E-value=1.9e-32 Score=293.87 Aligned_cols=269 Identities=19% Similarity=0.206 Sum_probs=193.2
Q ss_pred CceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHH
Q 010832 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (499)
Q Consensus 127 ~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l 206 (499)
++++.|...+|||||++||||+|+++++|+++|++++.||+|.++..++|+|..+..-+.
T Consensus 4 ~~~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~-------------------- 63 (497)
T 2csx_A 4 MKKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAE-------------------- 63 (497)
T ss_dssp SCEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHH--------------------
T ss_pred CCcEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHH--------------------
Confidence 468999999999999999999999999999999999999999999999998875542210
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeee---ccccccCcHHHHH
Q 010832 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK---GESFYNPYIPGVI 283 (499)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~---~es~~~~~v~~~i 283 (499)
+. .. + ++++++.+.+.|+++|++|||++|++ ++..|.+.+.+++
T Consensus 64 --------~~-g~------------------~------~~~~~~~~~~~~~~~~~~lgi~~d~~~~t~~~~~~~~~~~~~ 110 (497)
T 2csx_A 64 --------EL-GI------------------S------PKELVDRNAERFKKLWEFLKIEYTKFIRTTDPYHVKFVQKVF 110 (497)
T ss_dssp --------HS-SS------------------C------HHHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHHH
T ss_pred --------Hc-CC------------------C------HHHHHHHHHHHHHHHHHHhCCcCCCCccCCCHHHHHHHHHHH
Confidence 00 01 1 13467888999999999999999753 2334788899999
Q ss_pred HHHHHCCCeEee--cCeEEEEecC--------C-----------------------------------------------
Q 010832 284 DELSKQGLVEES--QGARVIFIEG--------V----------------------------------------------- 306 (499)
Q Consensus 284 ~~L~~~g~~y~~--dGa~~~~~~g--------~----------------------------------------------- 306 (499)
++|.++|++|+. .|.+|+.+.. +
T Consensus 111 ~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~ 190 (497)
T 2csx_A 111 EECYKRGDIYLGEYEGWYCVGCEEFKSEAELAEDHTCPIHQKKCEYIKEPSYFFRLSKYQDKLLELYEKNPEFIQPDYRR 190 (497)
T ss_dssp HHHHHTTCEEEEEC---------------------------------CCEEEEECTTSSHHHHHHHHHHCTTSBCSHHHH
T ss_pred HHHHHCCCEEecceeeccCcccCeEccHHHhccCCCCCCCCCCCeEEecCceEEEcHHHHHHHHHHHHhCCCeeCcHHHH
Confidence 999999999986 4555554310 0
Q ss_pred ----------CCCeEEEc--CC---Ccccccc--------hh-----HHHHHHH-HhhcCCCeEEEEecCCccccHHHHH
Q 010832 307 ----------NIPLIIVK--SD---GGFNYAS--------TD-----LAALWYR-LNEEKAEWIIYVTDVGQQLHFDMVF 357 (499)
Q Consensus 307 ----------~~d~vl~k--sD---G~~~Y~t--------~D-----iA~~~~k-~~~~~~d~~i~V~g~~q~~hf~~~~ 357 (499)
..|..+.| .+ |.+.... -| ++..... ...+.+| +++.|.||.. |..++
T Consensus 191 ~~~~~~l~~~~~Dw~isR~~~~~~WG~~iP~~~~~~i~vW~ds~~~~~s~~~~~~~~~~p~d--i~~~G~D~~~-~H~~~ 267 (497)
T 2csx_A 191 NEIISFVKQGLKDLSVTRPRSRVKWGIPVPFDPEHTIYVWFDALFNYISALEDKVEIYWPAD--LHLVGKDILR-FHTVY 267 (497)
T ss_dssp HHHHHHHHHCCCCEECEEETTTCCSSEEETTEEEEEECSHHHHHTHHHHTTTTTHHHHCSCS--CEEEEGGGHH-HHHTH
T ss_pred HHHHHHHhcCCccccccccCCCCCCceecCCCCCceEEEecccchhhcccCCCcchhhCCce--EEEeecchhH-hHHHH
Confidence 01333333 22 4322210 00 1100000 0124555 6788888755 33322
Q ss_pred --HHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 010832 358 --SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTA 435 (499)
Q Consensus 358 --~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a 435 (499)
+.+.++|+. +...+.|+ |+|+. +|+|||||+||+|++.|++++
T Consensus 268 ~~a~l~~~g~~-----~~~~~~~~--G~v~~-~G~KMSKS~GN~i~~~dli~~--------------------------- 312 (497)
T 2csx_A 268 WPAFLMSLGYE-----LPKKVFAH--GWWTV-EGKKMSKTLGNVVDPYEVVQE--------------------------- 312 (497)
T ss_dssp HHHHHHHHTCC-----CCSCEEEE--CCEES-SSSBCCTTTTCCCCHHHHHHH---------------------------
T ss_pred HHHHHHHcCCC-----CCcEEEEC--cEEEe-CCceeCCcCCCCCCHHHHHHH---------------------------
Confidence 556778873 35678887 77885 899999999999999999987
Q ss_pred HHhhhhHHHHHhhc-CCCCCCccccHHHHhcccC-CchhHHHHHHHHHHHHHHHh
Q 010832 436 EAVGYGAAKYFDLK-NNRLTNYTFSFDQMLNDKG-NTAVYLLYAHARICSIIRKS 488 (499)
Q Consensus 436 ~~vg~~airy~~L~-~~~~~~~~Fd~~~~~~~~~-n~~~YlqYa~aR~~silrk~ 488 (499)
+|++++||++++ .++.++++|+++.+.+..+ +-..+|+|+++|+++++++.
T Consensus 313 --~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~~~l~n~~~R~~~~~~~~ 365 (497)
T 2csx_A 313 --YGLDEVRYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLYSRVVNMAHKF 365 (497)
T ss_dssp --HCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHTCCCCCHHHHHHHHHHHHHH
T ss_pred --CCcHHHHHHHHhcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 699999999998 7899999999999988654 34568999999999999885
No 12
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=99.97 E-value=8.6e-32 Score=289.07 Aligned_cols=270 Identities=17% Similarity=0.138 Sum_probs=195.0
Q ss_pred CceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHH
Q 010832 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (499)
Q Consensus 127 ~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l 206 (499)
.+++.|...+|||||++||||+|+++++|+++|++|+.||+|.++..++|+|..+..-+.
T Consensus 2 ~~~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~-------------------- 61 (500)
T 2d5b_A 2 EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQ-------------------- 61 (500)
T ss_dssp CCEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHH--------------------
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHH--------------------
Confidence 467999999999999999999999999999999999999999999999998764432211
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeee-c--cccccCcHHHHH
Q 010832 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK-G--ESFYNPYIPGVI 283 (499)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~-~--es~~~~~v~~~i 283 (499)
+. .. + ++++++.+.+.|+++|++|||++|++ . +..|.+.+.+++
T Consensus 62 --------~~-g~------------------~------~~~~~~~~~~~~~~~~~~lgi~~d~~~~t~~~~~~~~~~~~~ 108 (500)
T 2d5b_A 62 --------AA-GE------------------D------PKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVL 108 (500)
T ss_dssp --------HH-TS------------------C------HHHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHHH
T ss_pred --------Hc-CC------------------C------HHHHHHHHHHHHHHHHHHhCCcCCCCcccCCHHHHHHHHHHH
Confidence 00 01 1 23568888999999999999999753 2 334778899999
Q ss_pred HHHHHCCCeEee--cCeEEEEec-----CC--------------------------------------------------
Q 010832 284 DELSKQGLVEES--QGARVIFIE-----GV-------------------------------------------------- 306 (499)
Q Consensus 284 ~~L~~~g~~y~~--dGa~~~~~~-----g~-------------------------------------------------- 306 (499)
++|.++|++|+. .|.+|+.+. ++
T Consensus 109 ~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l~~g~c~~~~~~v~~~~~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~~ 188 (500)
T 2d5b_A 109 KKVYEAGDIYYGEYEGLYCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRN 188 (500)
T ss_dssp HHHHHTTCEEEEEEEEEEETTTTEECCTTTSBTTBCTTTCSBCEEEEEEEEEECGGGGHHHHHHHHHTCTTSEESHHHHH
T ss_pred HHHHHCCCEEecceEEecCCCcCcccCchhccCCcCCCCCCeeeEEecCceEEEcHHHHHHHHHHHHhCCCeeCCHHHHH
Confidence 999999999986 354443221 00
Q ss_pred ---------CCCeEEEc--CC---Cccc----------ccchh------HHHHHHH-Hh-hcCCCeEEEEecCCccccHH
Q 010832 307 ---------NIPLIIVK--SD---GGFN----------YASTD------LAALWYR-LN-EEKAEWIIYVTDVGQQLHFD 354 (499)
Q Consensus 307 ---------~~d~vl~k--sD---G~~~----------Y~t~D------iA~~~~k-~~-~~~~d~~i~V~g~~q~~hf~ 354 (499)
..|..+.| ++ |.+. |+... ++|+..+ +. .++. -+++.|.||.. |.
T Consensus 189 ~~~~~l~~~l~Dw~iSRp~~~~~WG~piP~~~~~v~~vWfds~~~y~~~~g~~~~~~~~~~~p~--di~~~G~D~~~-fh 265 (500)
T 2d5b_A 189 EVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALDYPEGEAYRTFWPH--AWHLIGKDILK-PH 265 (500)
T ss_dssp HHHHHHTSCCCCEECEEETTTCCSSCEETTEEEEEECHHHHHHTHHHHTTTTTTCHHHHHHGGG--EEEEEEGGGHH-HH
T ss_pred HHHHHHhcCCCCeecccccccccCccccCCCCCCeeEEccccchhhHHHcCCCCCchHHHcCCC--eEEEEeechhh-hH
Confidence 02333433 22 4311 11111 1222111 11 1344 38899999876 55
Q ss_pred HHH--HHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHH
Q 010832 355 MVF--SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELE 432 (499)
Q Consensus 355 ~~~--~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~ 432 (499)
.++ +.+.++|+. +...+.|+ |+|+.++|+|||||+||+|++.|++++
T Consensus 266 ~~~~~a~~~~~g~~-----~~~~v~~~--G~v~~~~G~KMSKS~GN~i~p~d~i~~------------------------ 314 (500)
T 2d5b_A 266 AVFWPTMLKAAGIP-----MYRHLNVG--GFLLGPDGRKMSKTLGNVVDPFALLEK------------------------ 314 (500)
T ss_dssp HTHHHHHHHHHTCC-----CCSEEEEE--CCEECTTSSCCCTTTTCCCCHHHHHHH------------------------
T ss_pred HHHHHHHHHHcCCC-----CCcEEEEC--ceEEeCCCCcccccCCCCCCHHHHHHh------------------------
Confidence 544 556678873 35678887 779877999999999999999999997
Q ss_pred HHHHHhhhhHHHHHhhc-CCCCCCccccHHHHhcccCCc-hhHHHHHHHHHHHHHHHh
Q 010832 433 QTAEAVGYGAAKYFDLK-NNRLTNYTFSFDQMLNDKGNT-AVYLLYAHARICSIIRKS 488 (499)
Q Consensus 433 ~~a~~vg~~airy~~L~-~~~~~~~~Fd~~~~~~~~~n~-~~YlqYa~aR~~silrk~ 488 (499)
+|++++||++++ .++.++++|+++.+.+..++. ...+.+++.|+.+++++.
T Consensus 315 -----~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~ 367 (500)
T 2d5b_A 315 -----YGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQRTRAMLFRF 367 (500)
T ss_dssp -----HCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_pred -----cCcHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 699999999998 789999999999987753221 123567788998888764
No 13
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=99.97 E-value=3.7e-30 Score=279.93 Aligned_cols=274 Identities=12% Similarity=0.117 Sum_probs=196.0
Q ss_pred CCCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHH
Q 010832 125 LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIG 204 (499)
Q Consensus 125 ~~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~ 204 (499)
...+++.|.-.-|+|||++||||+|++++||+|+|++++.||+|.++.+++|+|.++...+...
T Consensus 15 ~~~~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~---------------- 78 (560)
T 3h99_A 15 QVAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL---------------- 78 (560)
T ss_dssp --CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHH----------------
T ss_pred CCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHh----------------
Confidence 3456777766677888999999999999999999999999999999999999999876443210
Q ss_pred HHHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeee-ecc--ccccCcHHH
Q 010832 205 ELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE-KGE--SFYNPYIPG 281 (499)
Q Consensus 205 ~l~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~-~~e--s~~~~~v~~ 281 (499)
..+ ++++++.+.+.|+++|++|||++|. ... ..|.+.+.+
T Consensus 79 -------------g~~------------------------~~~~~~~~~~~~~~~~~~lgi~~d~~~~t~~~~~~~~v~~ 121 (560)
T 3h99_A 79 -------------GIT------------------------PEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSEL 121 (560)
T ss_dssp -------------TSC------------------------HHHHHHHHHHHHHHHHHHTTCCCSEEEESSSHHHHHHHHH
T ss_pred -------------CCC------------------------HHHHHHHHHHHHHHHHHHcCCCCCCceeCCCHHHHHHHHH
Confidence 011 2346777888999999999999964 333 366778999
Q ss_pred HHHHHHHCCCeEeecCeEEEEec-----------------------C---------------------------------
Q 010832 282 VIDELSKQGLVEESQGARVIFIE-----------------------G--------------------------------- 305 (499)
Q Consensus 282 ~i~~L~~~g~~y~~dGa~~~~~~-----------------------g--------------------------------- 305 (499)
++++|.++|++|+.++.+|+... |
T Consensus 122 ~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~gd~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~ 201 (560)
T 3h99_A 122 IYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSPTELIEPKSVVSGATPVMRDSE 201 (560)
T ss_dssp HHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEECTTTCCSSEETTBCTTTCCBCCGGGCEEEEETTTCCCCEEEEEE
T ss_pred HHHHHHHCCCEEEeeeeEeecCccCceecchhcCCCCCCCCCcccccchhhhccccCChhhhcCCccccCCCCceEEecc
Confidence 99999999999999988887431 0
Q ss_pred ------------------------------------CCCCeEEEcCC---Ccc----------cccchhHHHH--H--HH
Q 010832 306 ------------------------------------VNIPLIIVKSD---GGF----------NYASTDLAAL--W--YR 332 (499)
Q Consensus 306 ------------------------------------~~~d~vl~ksD---G~~----------~Y~t~DiA~~--~--~k 332 (499)
...|..|.|.. |.+ +|+...++|. . |.
T Consensus 202 ~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~D~~IsR~~~~WG~~iP~~~~~viyvW~da~~~y~s~~~~~~ 281 (560)
T 3h99_A 202 HFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPNAPGKYFYVWLDAPIGLMGSFKNLC 281 (560)
T ss_dssp EEEECGGGGHHHHHHHHHTSCSCHHHHHHHHHHHHHCCCCEECEEESSCSSCBCTTCTTEEECHHHHHHHHHHHHHHHHH
T ss_pred eEEEEHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCCCCCccccCCcCCeeCCCCCCceEEeCcccchhHHHHHHHHh
Confidence 01223333333 321 2222223331 0 10
Q ss_pred --------Hh-hcCCC---eEEEEecCCccc-cHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCc
Q 010832 333 --------LN-EEKAE---WIIYVTDVGQQL-HFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEV 399 (499)
Q Consensus 333 --------~~-~~~~d---~~i~V~g~~q~~-hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~ 399 (499)
+. .|..| .+++++|.||.. |.....+++.++|+. +...+. .+|+|+. +|+|||||+||+
T Consensus 282 ~~~~~~~~~~~~wp~~~~~~~~~~~G~D~~~fh~~~~~a~l~~~g~~-----~p~~v~--~hg~v~~-~G~KMSKS~GNv 353 (560)
T 3h99_A 282 DKRGDSVSFDEYWKKDSTAELYHFIGKDIVYFLSLFWPAMLEGSNFR-----KPSNLF--VHGYVTV-NGAKMSKSRGTF 353 (560)
T ss_dssp HHHTCSSHHHHHHBTTCCSEEEEEEEGGGHHHHHTHHHHHHHHTTBC-----CCSEEE--EECCEEE-TTEECCTTTTCC
T ss_pred hccCChhhHHHhCcCCCCceeEEEeccccchhHHHHHHHHHHhCCCC-----CCcEEE--EEeEEEe-CCeeccccCCCc
Confidence 10 12233 568999999865 222333567788984 223332 3478885 899999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCC-C-CCccccHHHHhc-ccCCchhHHHH
Q 010832 400 VRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-L-TNYTFSFDQMLN-DKGNTAVYLLY 476 (499)
Q Consensus 400 v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~-~-~~~~Fd~~~~~~-~~~n~~~YlqY 476 (499)
|++.|++++ +|++++||++++..+ . .+++||++.+.+ .+.+...++.+
T Consensus 354 v~p~d~i~~-----------------------------~GaDalR~~ll~~~~~~~~d~~f~~~~~~~~~~~~l~~~l~n 404 (560)
T 3h99_A 354 IKASTWLNH-----------------------------FDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVN 404 (560)
T ss_dssp CBHHHHHHH-----------------------------SCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHHHHCCCCCTH
T ss_pred CCHHHHHHH-----------------------------cCcHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 999999998 699999999999876 4 699999999876 33344446788
Q ss_pred HHHHHHHHHHHh
Q 010832 477 AHARICSIIRKS 488 (499)
Q Consensus 477 a~aR~~silrk~ 488 (499)
+++|+++++++.
T Consensus 405 ~~~R~~~~~~~~ 416 (560)
T 3h99_A 405 LASRNAGFINKR 416 (560)
T ss_dssp HHHTTHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 889999999875
No 14
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=99.96 E-value=5.1e-29 Score=269.00 Aligned_cols=271 Identities=16% Similarity=0.148 Sum_probs=191.3
Q ss_pred CCCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHH
Q 010832 125 LRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIG 204 (499)
Q Consensus 125 ~~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~ 204 (499)
+..+++.|..+-|||||++||||+|+++++|+|+|++++.||+|.++..++++|..+..-+..
T Consensus 9 ~~~~~~~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~----------------- 71 (524)
T 2x1l_A 9 GGSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAK----------------- 71 (524)
T ss_dssp --CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHH-----------------
T ss_pred CCCCCEEEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHH-----------------
Confidence 345678999999999999999999999999999999999999999999999988755422210
Q ss_pred HHHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeee-eecccc--ccCcHHH
Q 010832 205 ELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGESF--YNPYIPG 281 (499)
Q Consensus 205 ~l~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd-~~~es~--~~~~v~~ 281 (499)
.|. .++++++.+.+.|++++++|||++| +...+. |.+.+.+
T Consensus 72 -------------------------------~g~-----~~~~~~~~~~~~~~~~~~~lgi~~d~~~~t~~~~~~~~v~~ 115 (524)
T 2x1l_A 72 -------------------------------EGI-----PAAELARRNSDVFQRLQEKLNISFDRFIRTSDADHYEASKA 115 (524)
T ss_dssp -------------------------------HTS-----CHHHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHH
T ss_pred -------------------------------cCC-----CHHHHHHHHHHHHHHHHHHcCCcCCCCeecCCHHHHHHHHH
Confidence 011 0245678888999999999999997 444444 7888999
Q ss_pred HHHHHHHCCCeEeecCeEEEEec------------C--------CCCCeEEE----------------------------
Q 010832 282 VIDELSKQGLVEESQGARVIFIE------------G--------VNIPLIIV---------------------------- 313 (499)
Q Consensus 282 ~i~~L~~~g~~y~~dGa~~~~~~------------g--------~~~d~vl~---------------------------- 313 (499)
++++|.++|++|+.++.+|+... | ..+..+..
T Consensus 116 ~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g~~G~~c~~~~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~~~i 195 (524)
T 2x1l_A 116 IWKRMADAGDIYLDAYKGWYSIRDERFFTENETTEQPDGTRIATETGAPVTWTEEQTYFFRLSAYTDRLLALYEEHPEFI 195 (524)
T ss_dssp HHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEECTTSCEEETTTCCBEEEEEEEEEEECGGGSHHHHHHHHHHCGGGE
T ss_pred HHHHHHHCCCEEeeeeeeeccCccCccccHHHhccCCCCCccccccCCcceEEecCCeEeeHHHHHHHHHHHHHhCCCee
Confidence 99999999999999999888542 0 00101110
Q ss_pred -----------------------cC---CCcc--------cc--cchhHHHHH---H------HHh-hcCCCeEEEEecC
Q 010832 314 -----------------------KS---DGGF--------NY--ASTDLAALW---Y------RLN-EEKAEWIIYVTDV 347 (499)
Q Consensus 314 -----------------------ks---DG~~--------~Y--~t~DiA~~~---~------k~~-~~~~d~~i~V~g~ 347 (499)
|. =|.+ .| +.+.++|.. | .+. .+.+| +++.|.
T Consensus 196 ~p~~~~~~~~~~~~~~l~Dw~iSRqr~~WG~~iP~~~~~~~yvWfds~~~~~~~~g~p~~~~~~~~~~~p~d--i~~~G~ 273 (524)
T 2x1l_A 196 GPDARRNEIVSFVSGGLKDLSISRTTFDWGVPVPDHPDHVMYVWVDALTNYLTGVGFPDTESESFRRYWPAD--LHMIGK 273 (524)
T ss_dssp ESHHHHHHHHHHHTTCCCCEECEESSCCSSCEETTEEEEEECHHHHHHTHHHHTTTTTCTTSHHHHHHCSCS--EEEEEG
T ss_pred CCHHHHHHHHHHHHcCCcccceECCCCCcCccCCCCCCCEEEEecCCchHHHHHcCCCCCchHHHHhhCCCe--EEEEee
Confidence 00 0110 01 111111100 0 000 12334 677888
Q ss_pred CccccHHHHH--HHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccHHHHHHHHHHHHHHHHHHhcCCCC
Q 010832 348 GQQLHFDMVF--SAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKE 425 (499)
Q Consensus 348 ~q~~hf~~~~--~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~ 425 (499)
||. .|..++ +.+.++|+. ++...+.| |+|+. +|+|||||+||+|++.|++++
T Consensus 274 D~~-~fh~~~~~a~l~~~g~~----~~~~v~~h---G~v~~-~G~KMSKS~GN~v~p~d~i~~----------------- 327 (524)
T 2x1l_A 274 DII-RFHTVYWPAFLMSAGLP----LPKRIFAH---GWLLN-RGEKMSKSIGNVVDPVNLVDT----------------- 327 (524)
T ss_dssp GGH-HHHHTHHHHHHHHHTCC----CCSCEEEE---CCEEE-CSCSEETTTEESSCHHHHHHH-----------------
T ss_pred chh-HhHHHHHHHHHHHCCCC----CCcEEEEC---cEEEe-CCcccCCcCCCCCCHHHHHHH-----------------
Confidence 876 354443 455677874 33445555 77885 799999999999999999987
Q ss_pred CCHHHHHHHHHHhhhhHHHHHhhc-CCCCCCccccHHHHhcccC-CchhHHHHHHHHHHHHHHHh
Q 010832 426 WTEEELEQTAEAVGYGAAKYFDLK-NNRLTNYTFSFDQMLNDKG-NTAVYLLYAHARICSIIRKS 488 (499)
Q Consensus 426 ~~~~~~~~~a~~vg~~airy~~L~-~~~~~~~~Fd~~~~~~~~~-n~~~YlqYa~aR~~silrk~ 488 (499)
+|++++||++|+ .++.++++||++.+.+..+ +....|.+++.|+.+++++.
T Consensus 328 ------------~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~n~l~n~~~r~~~~~~~~ 380 (524)
T 2x1l_A 328 ------------FGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLANELGNLAQRSLSMVAKN 380 (524)
T ss_dssp ------------HCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_pred ------------cChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 699999999998 8889999999999876532 23335777888998888764
No 15
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=99.94 E-value=9.9e-27 Score=246.64 Aligned_cols=149 Identities=17% Similarity=0.152 Sum_probs=108.9
Q ss_pred cCeEEEEecCCCCCeEEEcCCCccccc-chhHHHHHHHHhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCC
Q 010832 296 QGARVIFIEGVNIPLIIVKSDGGFNYA-STDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYP 374 (499)
Q Consensus 296 dGa~~~~~~g~~~d~vl~ksDG~~~Y~-t~DiA~~~~k~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~ 374 (499)
.|++|+..+ .-.|+||+|+||+|||. +.++. .. ..+.+++| +|.||..+++++..+++++|+. .+
T Consensus 182 ~G~~~~~~~-~~~D~Vl~RsDG~ptY~~a~vvD----D~-~~githvi--rG~D~~~~t~~q~~l~~aLG~~------~p 247 (481)
T 2o5r_A 182 KGEVVFKTG-AIGDFVIMRSNGLPTYNFACVVD----DM-LMEITHVI--RGDDHLSNTLRQLALYEAFEKA------PP 247 (481)
T ss_dssp TEEEEECTT-SSCBEEEECTTSCBCHHHHHHHH----HH-HTTCSEEE--EEGGGHHHHHHHHHHHHHTTCC------CC
T ss_pred cceeEeccc-cCCCeEEEccCCCcchhhHHHHH----HH-hCCCCeEE--EChhHHHhHHHHHHHHHHcCCC------CC
Confidence 466666543 23589999999999994 44444 33 35678885 9999999999999999999994 35
Q ss_pred cEEEEEeEEEecCCCCccccccCCcccHHHHHHHHH--HHHHHHHHHhcCCCCCCHHHHHHHHHHhh-hhHHHHHhhcCC
Q 010832 375 KASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAK--NRSKAVLIERGKDKEWTEEELEQTAEAVG-YGAAKYFDLKNN 451 (499)
Q Consensus 375 ~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~dll~e~~--~~a~~~~~~~~~~~~~~~~~~~~~a~~vg-~~airy~~L~~~ 451 (499)
.|.|+++ +++.+|+|||||+|++ +++++++++. +...+.+.. .+|++....++ .. .+++++|++++.
T Consensus 248 ~~~H~pl--il~~~G~KLSKR~g~~-~l~~~~~~G~~peal~~~l~~----lG~s~~~~~e~---~~~~e~i~~f~l~~~ 317 (481)
T 2o5r_A 248 VFAHVST--ILGPDGKKLSKRHGAT-SVEAFRDMGYLPEALVNYLAL----LGWSHPEGKEL---LTLEELISSFSLDRL 317 (481)
T ss_dssp EEEEECC--EECTTSSBCCGGGSCC-BHHHHHHHTCCHHHHHHHHHT----SSBCCTTCCCC---CCHHHHHHHCCGGGB
T ss_pred eEEEEee--EECCCCCcccCcCCcc-cHHHHHHCCCCHHHHHHHHHH----hCCCCCccccc---CCHHHHHHhCChhhC
Confidence 7999965 6668999999999988 9999998843 222333322 22322000000 11 368999999999
Q ss_pred CCCCccccHHHHhcccC
Q 010832 452 RLTNYTFSFDQMLNDKG 468 (499)
Q Consensus 452 ~~~~~~Fd~~~~~~~~~ 468 (499)
+.++..|||+++.++++
T Consensus 318 ~~~~~~fd~~kl~~~n~ 334 (481)
T 2o5r_A 318 SPNPAIFDPQKLKWMNG 334 (481)
T ss_dssp CSSCEECCHHHHHHHHH
T ss_pred CccCcccChHHhhhhCH
Confidence 99999999999999965
No 16
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=99.94 E-value=1.3e-27 Score=257.48 Aligned_cols=274 Identities=14% Similarity=0.072 Sum_probs=169.2
Q ss_pred HHHHHHHHHHHcCCCCCCCcCCCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcc--hHH-
Q 010832 105 WMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWG--TQF- 181 (499)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G--~Qi- 181 (499)
|....+.++++++.. ++.++. .|+|||||++||||+|+++++|+++|+|+++||+|.++++++|+| +++
T Consensus 4 W~~~~a~~~~~~~~~-------~~~yv~-~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip 75 (523)
T 1irx_A 4 WADYIADKIIRERGE-------KEKYVV-ESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVP 75 (523)
T ss_dssp HHHHHHHHHHHHSCC-------CSEEEE-EEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCC
T ss_pred hHHHHHHHHHHhcCC-------CCeEEE-CCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhh
Confidence 444455566654322 222222 337999999999999999999999999999999999999999998 433
Q ss_pred HHHHHHHHhhCCCCCccccchHHHHHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHH
Q 010832 182 GMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYK 261 (499)
Q Consensus 182 ~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~ 261 (499)
..+..+. + .+.+.++. +-.||. ..++.+++.+.+.|.++|+
T Consensus 76 ~~~~~a~-~------~~~G~~~~------------------------------~~p~p~--~~~~~~~~~~~~~~~~~l~ 116 (523)
T 1irx_A 76 RNVPQEW-K------DYLGMPIS------------------------------EVPDPW--GCHESYAEHFMRKFEEEVE 116 (523)
T ss_dssp SSSCGGG-G------GGTTSBGG------------------------------GSCCTT--SSSSSHHHHHHHHHHHHHH
T ss_pred hHHHHHH-H------HHcCCCcc------------------------------cCCcch--hhHHHHHHHHHHHHHHHHH
Confidence 0000000 0 00011100 011221 1245678899999999999
Q ss_pred HcCCeeeeecccc-ccC-cHHHHHHHHHHCC----------------CeEeecCeEEEEec--CCC-------------C
Q 010832 262 RLRVDLEEKGESF-YNP-YIPGVIDELSKQG----------------LVEESQGARVIFIE--GVN-------------I 308 (499)
Q Consensus 262 ~LgI~fd~~~es~-~~~-~v~~~i~~L~~~g----------------~~y~~dGa~~~~~~--g~~-------------~ 308 (499)
.|||.+|.+++|. |.+ .+.+++++|.++| .+|..+ |++++ +.. .
T Consensus 117 ~Lgi~~D~~~~se~~~~g~~~~~i~~L~~~G~~iy~~~~~~~g~~~~~~y~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 193 (523)
T 1irx_A 117 KLGIEVDLLYASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPEN---WWPAMVYCPEHRREAEIIEWDGGW 193 (523)
T ss_dssp TTTCCCEEEEHHHHHHTTTTHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCCTT---CCSEEEECTTTCCEECEEEECSSS
T ss_pred HcCCCceEEechhhccchHHHHHHHHHHHchHHHHHHHHhhccccccccccCC---ceeccccchhhCCcccccccCCCC
Confidence 9999997656676 766 8999999999999 666542 44321 110 0
Q ss_pred CeEEEcCCCcccccchh-----HHHHHHH-HhhcCCCeEEEEecCCccc-c--HHHHHHHH-HHcCCCCCCCCCCCcEEE
Q 010832 309 PLIIVKSDGGFNYASTD-----LAALWYR-LNEEKAEWIIYVTDVGQQL-H--FDMVFSAA-KRAGWLSADDSTYPKASH 378 (499)
Q Consensus 309 d~vl~ksDG~~~Y~t~D-----iA~~~~k-~~~~~~d~~i~V~g~~q~~-h--f~~~~~~~-~~lG~~~~~~~~~~~~~H 378 (499)
+.-..-.+|.++|.... +.|+.+. +..+.++..|++.|.||.. | .+....++ +++|+. .+.|.|
T Consensus 194 ~~~f~~~~g~~~~~d~~~G~g~~~w~~d~~~~~~~l~~~vd~~G~Dh~~~h~s~~~~~~i~~~alG~~------~p~~~h 267 (523)
T 1irx_A 194 KVKYKCPEGHEGWVDIRSGNVKLRWRVDWPMRWSHFGVDFEPAGKDHLVAGSSYDTGKEIIKEVYGKE------APLSLM 267 (523)
T ss_dssp CEEECCSSSCCCEECTTSSCEEECHHHHHHHHHHHSCCCBCCEEHHHHSTTSHHHHHHHHHHHHHCCC------CCBCCE
T ss_pred ceeeeecCCCccccCCcCCCCCCCCCcchHhhHHHcCCCCcCCCcCccCCCcchhhHHHHHHHHhCCC------CCeEEE
Confidence 11111134544443221 1122211 0011233456688999866 2 22333333 688984 237889
Q ss_pred EEeEEEecC-CCCccccccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCcc
Q 010832 379 VGFGLVLGE-DGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYT 457 (499)
Q Consensus 379 v~~g~V~~~-~g~KMSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~~ 457 (499)
+ |+|++. +|+|||||+||++++.|++++ ++++++|||+++.+++++++
T Consensus 268 ~--~~i~~~g~g~KmSKs~Gn~i~~~~~~~~-----------------------------~~pdalR~~l~~~~~~~~~~ 316 (523)
T 1irx_A 268 Y--EFVGIKGQKGKMSGSKGNVILLSDLYEV-----------------------------LEPGLVRFIYARHRPNKEIK 316 (523)
T ss_dssp E--CCEEESCC---------CCCCHHHHHTT-----------------------------SCHHHHHHHHHSSCTTSCEE
T ss_pred E--EEEEeCCCCCCCCCcCCCCCCHHHHHHH-----------------------------cCHHHHHHHHHhcCCCCCce
Confidence 8 668876 699999999999999999887 59999999999999999999
Q ss_pred ccHH-HHhc
Q 010832 458 FSFD-QMLN 465 (499)
Q Consensus 458 Fd~~-~~~~ 465 (499)
|+++ .+.+
T Consensus 317 fs~~~~l~~ 325 (523)
T 1irx_A 317 IDLGLGILN 325 (523)
T ss_dssp ECCSTTHHH
T ss_pred eCcchhHHH
Confidence 9998 4443
No 17
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=99.93 E-value=1.2e-25 Score=250.23 Aligned_cols=270 Identities=13% Similarity=0.125 Sum_probs=186.1
Q ss_pred ceEEEEecCCCCCCCCccchhhH-hHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHH
Q 010832 128 KKAVVDFSSPNIAKEMHVGHLRS-TIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (499)
Q Consensus 128 ~~v~Ve~~SpNp~~plHiGH~R~-~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l 206 (499)
++++|....|||||++||||+|+ ++++|+++|++|..||+|.++...+++|..+..-+...
T Consensus 2 ~~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~------------------ 63 (722)
T 1rqg_A 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKE------------------ 63 (722)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHH------------------
T ss_pred CCEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHc------------------
Confidence 57999999999999999999998 89999999999999999999999999998765333110
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeecc---ccccCcHHHHH
Q 010832 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE---SFYNPYIPGVI 283 (499)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~~e---s~~~~~v~~~i 283 (499)
.. + ++++++.+...|++++++|||++|++.. ..|...+++++
T Consensus 64 -----------G~------------------~------p~e~~~~~~~~~~~~~~~lgis~D~~~rT~d~~~~~~v~~~f 108 (722)
T 1rqg_A 64 -----------GR------------------S------PREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFF 108 (722)
T ss_dssp -----------TC------------------C------HHHHHHHHHHHHHHHHHHHTCCCSEEEETTSHHHHHHHHHHH
T ss_pred -----------CC------------------C------HHHHHHHHHHHHHHHHHHhCCCCCCCeeCCCHHHHHHHHHHH
Confidence 01 1 2456888999999999999999987543 34677899999
Q ss_pred HHHHHCCCeEeecCeEEEEecC-----------------------C----------------------------------
Q 010832 284 DELSKQGLVEESQGARVIFIEG-----------------------V---------------------------------- 306 (499)
Q Consensus 284 ~~L~~~g~~y~~dGa~~~~~~g-----------------------~---------------------------------- 306 (499)
.+|.++|++|+.+..+|+...- +
T Consensus 109 ~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~gtcP~c~~~~~~Gd~c~~~G~~l~~~~l~~p~~~r~g~~v~~~~~~qw 188 (722)
T 1rqg_A 109 LKAYENGHLVKKVTKQAYCEHDKMFLPDRFVIGTCPYCGAEDQKGDQCEVCGRPLTPEILINPRCAICGRPISFRDSAHY 188 (722)
T ss_dssp HHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCCSBCSSSCCSCCCTTTCSSSCCCCCTTSSBSCBCTTTCCBCEEEEEEEE
T ss_pred HHHHHCCCEEecceeeeecCCCCcCcchhhcccccCccCCccCCcchhhhcccccChhhccCCcccCCCcEeEEEEeccE
Confidence 9999999999876666654210 0
Q ss_pred -----------------------------------CCCeEEEc--------------CCCcccccchh--HHHHH----H
Q 010832 307 -----------------------------------NIPLIIVK--------------SDGGFNYASTD--LAALW----Y 331 (499)
Q Consensus 307 -----------------------------------~~d~vl~k--------------sDG~~~Y~t~D--iA~~~----~ 331 (499)
..|.-|-| .+|...|..-| ++|.. |
T Consensus 189 F~~l~~~~~~l~~~~~~~~wp~~~~~~~~~wl~~gl~dw~ISR~~~WG~piP~~~~g~~~~~iyvW~da~i~y~~~~~~~ 268 (722)
T 1rqg_A 189 YIKMQDFAERLKRWIEKQPWKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLDEEDMKGKVLYVWFEAPIGYISITIEH 268 (722)
T ss_dssp EECGGGTHHHHHHHHHSSCCCHHHHHHHHHHHTTCCCCEECEECCSSSCBCSCCCSSSTTCEECHHHHGGGHHHHHHHHH
T ss_pred EEEhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHCCCcccceeccccCccccCccccCCCCCEEEEEeccccchhhhHHHH
Confidence 01111111 11222333222 33321 1
Q ss_pred H--------Hh-hcCC-C---eEEEEecCCccccHHHHH--HHHHHcC----------CCCCCCCCCCcEEEEEeEEEec
Q 010832 332 R--------LN-EEKA-E---WIIYVTDVGQQLHFDMVF--SAAKRAG----------WLSADDSTYPKASHVGFGLVLG 386 (499)
Q Consensus 332 k--------~~-~~~~-d---~~i~V~g~~q~~hf~~~~--~~~~~lG----------~~~~~~~~~~~~~Hv~~g~V~~ 386 (499)
. +. -|.. + ..+++.|.|+.. |..++ +.+.++| + ++...+.|. |+|+.
T Consensus 269 ~~~~g~~~~~~~~w~~pd~~~~~~h~~GkDii~-fH~~~wpA~l~~~~~~l~~d~~rg~-----~~Pk~v~~h--G~v~~ 340 (722)
T 1rqg_A 269 FKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIP-FHAIFWPAFLMAYGKYKDEEVEAEW-----NLPYDIPAN--EYLTL 340 (722)
T ss_dssp HHHTTCTTTTHHHHBCSSCCEEEEEEEEGGGHH-HHHTHHHHHHHTTCCBCSSSCCBCB-----CCCSBCCEE--CCEEE
T ss_pred HhhcCCchHHHhccCCCCCCCeeEEEccccccc-cchhhhHHHHhccCCCcccccccCC-----CCCCEEEEe--eeEEe
Confidence 1 11 1321 2 447788887643 22222 3445544 3 234667776 66875
Q ss_pred CCCCccccccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcC-CCCCCccccHHHHhc
Q 010832 387 EDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKN-NRLTNYTFSFDQMLN 465 (499)
Q Consensus 387 ~~g~KMSkR~G~~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~-~~~~~~~Fd~~~~~~ 465 (499)
+|+|||||+||+|++.|++++ +|++++||++++. .+.++++|+++.+.+
T Consensus 341 -~G~KMSKS~GNvV~p~d~i~~-----------------------------ygaDalR~~ll~~~~~~~D~~fs~~~~~~ 390 (722)
T 1rqg_A 341 -EGKKFSTSRNWAIWVHEFLDV-----------------------------FPADYLRYYLTTIMPETRDSDFSFSDFKV 390 (722)
T ss_dssp -TTEECBTTTTBSCBHHHHTTT-----------------------------SCHHHHHHHHHHTCCSSSCEEECHHHHHH
T ss_pred -CCeeeeeeCCCcCCHHHHHHh-----------------------------cCchHHHHHHHhcCCCCCCCccCHHHHHH
Confidence 899999999999999999987 6999999999997 789999999998866
Q ss_pred c-cCCchhHHHHHHHHHHHHHHHh
Q 010832 466 D-KGNTAVYLLYAHARICSIIRKS 488 (499)
Q Consensus 466 ~-~~n~~~YlqYa~aR~~silrk~ 488 (499)
. +.+..--+.....|+.+++++.
T Consensus 391 ~~n~~l~~~l~N~~~R~~~~~~k~ 414 (722)
T 1rqg_A 391 RINEELVNNLGNFVHRALTFVNRY 414 (722)
T ss_dssp HHHHTTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 1111111122235888887764
No 18
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=99.93 E-value=8.8e-26 Score=244.22 Aligned_cols=270 Identities=16% Similarity=0.145 Sum_probs=183.1
Q ss_pred ChhHHHHHHHHHHHcCCCCCCCcCCCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHH
Q 010832 102 SKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQF 181 (499)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi 181 (499)
.+.++...+.++++.+..++.. ..++|++.|+ |||||+|||||+|++++++.+||- +.|- ++--|.|...
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~RFa-PsPTG~LHiG~artAl~n~l~Ar~--~~G~---~ilRieDtD~-- 173 (592)
T 3al0_C 104 GSMFITGAFFDILEVGPKKIRR--CFELVRVRFA-PSPTGHLHVGGARTALFNWMFARK--EGGK---FILRIEDTDT-- 173 (592)
T ss_dssp ----------------CCCCCC--CCCCCEEEEC-CCSSSCCBHHHHHHHHHHHHHHHH--HTCE---EEECBCCCCS--
T ss_pred ChHHHHHHHHHHHHcChhhccc--CCCeEEEEEC-CCCCCCccHHHHHHHHHHHHHHHh--cCCc---EEEEecCcCh--
Confidence 3567888888888887654432 2367999999 999999999999999999999984 2332 2222344210
Q ss_pred HHHHHHHHhhCCCCCccccchHHHHHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHH
Q 010832 182 GMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYK 261 (499)
Q Consensus 182 ~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~ 261 (499)
. +.+..+.+.+.++|+
T Consensus 174 ----------------------------------------~------------------------r~~~~~~~~I~~dL~ 189 (592)
T 3al0_C 174 ----------------------------------------E------------------------RSSREYEQQILESLR 189 (592)
T ss_dssp ----------------------------------------S------------------------SCCHHHHHHHHHHHH
T ss_pred ----------------------------------------h------------------------hccHHHHHHHHHHHH
Confidence 0 001233456788999
Q ss_pred HcCCeeeee----------ccccccCcHHHHHHHHHHCCCeEe-----------------------ecC---eEEEEec-
Q 010832 262 RLRVDLEEK----------GESFYNPYIPGVIDELSKQGLVEE-----------------------SQG---ARVIFIE- 304 (499)
Q Consensus 262 ~LgI~fd~~----------~es~~~~~v~~~i~~L~~~g~~y~-----------------------~dG---a~~~~~~- 304 (499)
.||+.+|.. ..|.+.+...+++++|.++|++|. .+| +++|+++
T Consensus 190 wlGl~~D~~~~~gG~~gp~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~el~~~~~~~Y~~~~~~~~~g~~~~iR~k~~~ 269 (592)
T 3al0_C 190 WCGLDWDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLP 269 (592)
T ss_dssp HTTCCCSBBTTTBCTTCCCBSTTCHHHHHHHHHHHHHTTTEEEEEEETTEEEEECCCCSSCCHHHHHTTCCEEEEECCCS
T ss_pred HcCCCCCCCCCcCCCCCCeeeeCCHHHHHHHHHHHHHcCCceEecCCHHHHHhhcCCCCCcHHHHhhcCCCceEEEECCC
Confidence 999998642 234444567899999999999997 346 6777664
Q ss_pred -----------------CCCCCeEEEcCCCcccccchhHHHHHHHHhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCC
Q 010832 305 -----------------GVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLS 367 (499)
Q Consensus 305 -----------------g~~~d~vl~ksDG~~~Y~t~DiA~~~~k~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~ 367 (499)
++..|+||+|+||.|||.. |..++.. ..+.+++| +|.||..+.+++..+.+++|+.
T Consensus 270 ~~~~~~D~v~G~~~~~~~~~~D~Vl~R~dg~ptY~~---a~vvDD~-~~githvi--rG~D~~~~t~~q~~l~~alg~~- 342 (592)
T 3al0_C 270 GKTSFEDLLKGYMEFDNSTLEDFIIMKSNGFPTYNF---AVVVDDH-LMRISHVF--RGEDHLSNTPKQLMIYEAFGWE- 342 (592)
T ss_dssp SCCEECCTTTCSEECCSSSSCCEEEECTTSCCCHHH---HHHHHHH-HTTCSBCC--EEGGGGGGHHHHHHHHTTTTCC-
T ss_pred CCceeeecccceeeeccccCCCeEEEcCCCCeehhh---HHHHHHH-hcCCCeEE--EchhhHhCHHHHHHHHHHhCCC-
Confidence 2346899999999999984 4445665 47899985 9999999999999999999994
Q ss_pred CCCCCCCcEEEEEeEEEecCCCCccccccCCcccHHHHHHHHH--HHHHHHHHHhcCCCCCCHHHHHHHHHHhh-hhHHH
Q 010832 368 ADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAK--NRSKAVLIERGKDKEWTEEELEQTAEAVG-YGAAK 444 (499)
Q Consensus 368 ~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~dll~e~~--~~a~~~~~~~~~~~~~~~~~~~~~a~~vg-~~air 444 (499)
.+.+.|++ +|.+.+|+|||||.|+ +++.++.+.+. +...+.+.. .+|++..- + ... .+.++
T Consensus 343 -----~P~~~hlp--li~~~~g~KLSKR~g~-~~l~~~~~~G~~peal~~~l~~----lG~s~~~~-e---~~s~~e~i~ 406 (592)
T 3al0_C 343 -----APVFMHIP--LILGSDRTPLSKRHGA-TSVEHFRREGILSRALMNYLAL----LGWRVEGD-E---IFTIEEKLQ 406 (592)
T ss_dssp -----CCBCCEEC--CCBCTTSSBCCTTTCS-SBHHHHHHTTCCHHHHHHHHTT----TTBCCCSC-S---CCCTTTTGG
T ss_pred -----CCeEEEee--eeeCCCCCcccccCCc-ccHHHHHHCCCCHHHHHHHHHH----hCCCCccc-c---cCCHHHHHh
Confidence 35889995 5888999999999998 68999988643 223443332 22321100 0 011 23588
Q ss_pred HHhhcCCCCCCccccHHHHhcccC
Q 010832 445 YFDLKNNRLTNYTFSFDQMLNDKG 468 (499)
Q Consensus 445 y~~L~~~~~~~~~Fd~~~~~~~~~ 468 (499)
.|.+.+-+.++..||++++..+|+
T Consensus 407 ~f~~~~i~~~~~~fd~~kl~~~N~ 430 (592)
T 3al0_C 407 SFDPKDISNKGVIFDYQKLEWVNG 430 (592)
T ss_dssp GCCTTSBCSSCCBCCHHHHHHHHH
T ss_pred hCChhhcCcccceeCHHHHhhhhH
Confidence 999999999999999999988864
No 19
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=99.91 E-value=1.1e-23 Score=228.05 Aligned_cols=124 Identities=15% Similarity=0.158 Sum_probs=101.4
Q ss_pred CCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHH
Q 010832 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (499)
Q Consensus 126 ~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~ 205 (499)
+.++..|...-|+|||++||||+|+.++.|+++|++|+.||+|..+..++|+|..+..-+..
T Consensus 7 ~~k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k------------------ 68 (542)
T 3u1f_A 7 VEKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQ------------------ 68 (542)
T ss_dssp CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHH------------------
T ss_pred CCCCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHH------------------
Confidence 46778999999999999999999999999999999999999999999999999866432210
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeeccc---cccCcHHHH
Q 010832 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGES---FYNPYIPGV 282 (499)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~~es---~~~~~v~~~ 282 (499)
++-+| +++++.+.+.|++++++|||++||+.++ .|...+.++
T Consensus 69 -----------------------------~g~~~------~e~~~~~~~~~~~~~~~lgi~~D~~~~T~~~~~~~~v~~~ 113 (542)
T 3u1f_A 69 -----------------------------KQVSP------YDFTTAVAGEFKKCFEQMDYSIDYFIRTTNEQHKAVVKEL 113 (542)
T ss_dssp -----------------------------TTSCH------HHHHHHHHHHHHHHHHHHTCCCSEEEETTCHHHHHHHHHH
T ss_pred -----------------------------cCCCH------HHHHHHHHHHHHHHHHHhCCccCcCccCCCHHHHHHHHHH
Confidence 00111 3567888899999999999999986543 466789999
Q ss_pred HHHHHHCCCeEeecCeEEEE
Q 010832 283 IDELSKQGLVEESQGARVIF 302 (499)
Q Consensus 283 i~~L~~~g~~y~~dGa~~~~ 302 (499)
+.+|.++|++|+....+++.
T Consensus 114 f~~L~~~G~iy~~~~~v~~~ 133 (542)
T 3u1f_A 114 WTKLEQKGDIYLGRYEGWYS 133 (542)
T ss_dssp HHHHHHTTCEEEEEEEEEEE
T ss_pred HHHHhhcCcEEecceeEEee
Confidence 99999999999977666553
No 20
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=99.89 E-value=6.2e-22 Score=223.79 Aligned_cols=141 Identities=18% Similarity=0.203 Sum_probs=104.4
Q ss_pred CceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHH
Q 010832 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (499)
Q Consensus 127 ~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l 206 (499)
.++++|++.+|||||+|||||+|++++||+++|++|++||+|.+..+.+++|+++...+..+.. .+.+..
T Consensus 33 ~~~~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D~~G~pie~~a~~~~~--------~~~~~~-- 102 (810)
T 1wkb_A 33 EKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKN--------RDPKTI-- 102 (810)
T ss_dssp GGEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBBCCBSHHHHHHHHHHT--------TCHHHH--
T ss_pred CCcEEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccCCCCChHHHHHHHhcc--------cCchHH--
Confidence 5689999999999999999999999999999999999999999999999999999877654321 111111
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeee-----cc--ccccCcH
Q 010832 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK-----GE--SFYNPYI 279 (499)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~-----~e--s~~~~~v 279 (499)
+.+.+ .+..... .+.+. ...+++++.+...++++|++|||++||. .+ ..|...+
T Consensus 103 -~~~~~---~~g~~~~-------~~~~~--------~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~d~~~~~~~~v 163 (810)
T 1wkb_A 103 -WIYRD---VYKVPEE-------ILWTF--------EDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFI 163 (810)
T ss_dssp -HHHHH---TSCCCHH-------HHHGG--------GSHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBCSTTSHHHHHHH
T ss_pred -HHHHH---HhCCCHH-------HHHHH--------HHHHHHHHHHHHHHHHHHHHhCeEEecCCceEecCCchHHHHHH
Confidence 11111 1111100 00000 1124568889999999999999999973 24 4566678
Q ss_pred HHHHHHHHHCCCeEeec
Q 010832 280 PGVIDELSKQGLVEESQ 296 (499)
Q Consensus 280 ~~~i~~L~~~g~~y~~d 296 (499)
.+++.+|.++|++|+.+
T Consensus 164 ~~~f~~L~~~Gliy~~~ 180 (810)
T 1wkb_A 164 EWQFWKLKEKGYIVKGA 180 (810)
T ss_dssp HHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHCCCEEECC
Confidence 99999999999998643
No 21
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=99.88 E-value=5.9e-22 Score=209.86 Aligned_cols=262 Identities=16% Similarity=0.141 Sum_probs=185.9
Q ss_pred eEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHHHH
Q 010832 129 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQE 208 (499)
Q Consensus 129 ~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l~~ 208 (499)
+|++=| .|.|||+|||||+|++++-...||- +...++--|.|... .
T Consensus 25 ~v~~RF-APsPtG~LHiG~~rtal~n~l~Ar~-----~~G~filRieDtD~-------------------~--------- 70 (488)
T 3afh_A 25 LVRVRF-APSPTGHLHVGGARTALFNWMFARK-----EGGKFILRIEDTDT-------------------E--------- 70 (488)
T ss_dssp CCEEEE-CCCCSSSCBHHHHHHHHHHHHHHHH-----HTCEEEECBCCCCT-------------------T---------
T ss_pred CceEEE-CCCCCCCccHHHHHHHHHHHHHHHH-----cCCEEEEEEeeCCc-------------------c---------
Confidence 466645 4999999999999999877666664 34445555566321 0
Q ss_pred HHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeee----------ccccccCc
Q 010832 209 FYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEK----------GESFYNPY 278 (499)
Q Consensus 209 ~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~----------~es~~~~~ 278 (499)
+.+..+.+.+.++|+.||+.+|.. ..|.+.+.
T Consensus 71 --------------------------------------R~~~~~~~~I~~dL~wlGl~wDe~~~~gG~~gp~~QSer~~~ 112 (488)
T 3afh_A 71 --------------------------------------RSSREYEQQILESLRWCGLDWDEGPDIGGDFGPYRQSERLEI 112 (488)
T ss_dssp --------------------------------------TCCHHHHHHHHHHHHHTTCCCSBBTTTBCTTCCCBGGGCHHH
T ss_pred --------------------------------------cccHHHHHHHHHHHHHcCCCCCcCCCCCCCCCCeeeeCCHHH
Confidence 001223456778999999998652 23555566
Q ss_pred HHHHHHHHHHCCCeEe-----------------------ecC---eEEEEec------------------CCCCCeEEEc
Q 010832 279 IPGVIDELSKQGLVEE-----------------------SQG---ARVIFIE------------------GVNIPLIIVK 314 (499)
Q Consensus 279 v~~~i~~L~~~g~~y~-----------------------~dG---a~~~~~~------------------g~~~d~vl~k 314 (499)
..+++++|.++|.+|. .+| +++|+++ ++..|+||+|
T Consensus 113 y~~~~~~L~~~G~aY~c~ct~eel~~~~~~~Y~~~~~~~~~G~~~~iR~k~~~~~~~~~D~v~G~~~~~~~~~~D~Vl~R 192 (488)
T 3afh_A 113 YREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYMEFDNSTLEDFIIMK 192 (488)
T ss_dssp HHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCCHHHHHTTCCEEEEECCCSSEEEEEETTTEEEEEEGGGSCCEEEEC
T ss_pred HHHHHHHHHHcCCeEecCCCHHHHHhhcCCCCCchhhHHhcCCCceEEEECCCCceeEEeccceeEeecCCCCCCeEEEe
Confidence 7899999999999996 235 4666653 2346899999
Q ss_pred CCCcccccchhHHHHHHHHhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCcccc
Q 010832 315 SDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRT 394 (499)
Q Consensus 315 sDG~~~Y~t~DiA~~~~k~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSk 394 (499)
+||.|||.. |..++.. ..+.+++| +|.||..+.+++..+.+++|+. .+.+.|++ +|.+.+|+||||
T Consensus 193 ~DG~PtY~l---A~vVDD~-~mgIThVi--RG~D~l~~tp~q~~l~~aLG~~------~P~f~H~p--li~~~~g~KLSK 258 (488)
T 3afh_A 193 SNGFPTYNF---AVVVDDH-LMRISHVF--RGEDHLSNTPKQLMIYEAFGWE------APVFMHIP--LILGSDRTPLSK 258 (488)
T ss_dssp TTSCBCHHH---HHHHHHH-HTTCSEEE--EEGGGGGGHHHHHHHHHHHTCC------CCEEEEEC--CEECTTSSBCCT
T ss_pred cCCCeehhh---HHHHHHH-hcCCCEEE--EchhhhhCHHHHHHHHHHcCCC------CCeEEEEe--eeeCCCCCcccC
Confidence 999999984 5556666 47899986 9999999999999999999994 36899995 588899999999
Q ss_pred ccCCcccHHHHHHHHH--HHHHHHHHHhcCCCCCCH-H-HHHHHHHHhhhhHHHHHhhcCCCCCCccccHHHHhcccCCc
Q 010832 395 RFSEVVRLVDLLDEAK--NRSKAVLIERGKDKEWTE-E-ELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNT 470 (499)
Q Consensus 395 R~G~~v~l~dll~e~~--~~a~~~~~~~~~~~~~~~-~-~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~~~~~~n~ 470 (499)
|.|+ ++++++.+.+. +...+.+..- +|++ . ++..+ .+.++.|++++-++++..||++++..+|+
T Consensus 259 R~g~-~~l~~~r~~G~~peal~n~l~~l----G~s~~~~e~~s~-----~e~i~~f~~~~i~~~~~~fd~~kl~~~N~-- 326 (488)
T 3afh_A 259 RHGA-TSVEHFRREGILSRALMNYLALL----GWRVEGDEIFTI-----EEKLQSFDPKDISNKGVIFDYQKLEWVNG-- 326 (488)
T ss_dssp TTSC-CBHHHHHHHTCCHHHHHHHHHHT----TCCCSSCSCCCH-----HHHGGGCCGGGSCSSCEECCHHHHHHHHH--
T ss_pred cCCc-ccHHHHHHCCCCHHHHHHHHHHh----CCCCcccccCCH-----HHHHhhCChhhcCccccccChHHhhhccH--
Confidence 9998 58999988653 3344444432 2321 1 11111 13588999999999999999999998864
Q ss_pred hhHHH-----HHHHHHHHHHHHhC
Q 010832 471 AVYLL-----YAHARICSIIRKSG 489 (499)
Q Consensus 471 ~~Ylq-----Ya~aR~~silrk~~ 489 (499)
-||+ .-+.++...+.+++
T Consensus 327 -~~i~~~~~~~l~~~l~~~l~~~g 349 (488)
T 3afh_A 327 -KHMRRIDLEDLKREFIEWAKYAG 349 (488)
T ss_dssp -HHHHHSCHHHHHHHHHHHHHHHT
T ss_pred -HHHhcCCHHHHHHHHHHHHHHcC
Confidence 2222 12455666666666
No 22
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=99.87 E-value=3.8e-22 Score=199.17 Aligned_cols=233 Identities=18% Similarity=0.092 Sum_probs=147.8
Q ss_pred ecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHHHHHHHHH
Q 010832 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRS 213 (499)
Q Consensus 134 ~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~ 213 (499)
=-.|+|||+|||||+|++++ |.|.+.++.+..+--|.|....
T Consensus 9 RFAPsPtG~LHiG~~rtal~-----n~l~Ar~~~g~~ilRieDtD~~--------------------------------- 50 (298)
T 1nzj_A 9 RFAPSPSGELHFGSLIAALG-----SYLQARARQGRWLVRIEDIDPP--------------------------------- 50 (298)
T ss_dssp EECCCTTSCCCHHHHHHHHH-----HHHHHHHTTCEEEEEECCSCGG---------------------------------
T ss_pred EECcCCCCCccHHHHHHHHH-----HHHHHHhcCCeEEEEEecCCch---------------------------------
Confidence 45799999999999999985 4555555667777777773210
Q ss_pred hcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeee--eccccccCcHHHHHHHHHHCCC
Q 010832 214 KNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE--KGESFYNPYIPGVIDELSKQGL 291 (499)
Q Consensus 214 ~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~--~~es~~~~~v~~~i~~L~~~g~ 291 (499)
+ . +..+.+.+.++|+.|||.+|. ...|.+.+...+++++|.++|+
T Consensus 51 --R--~-----------------------------~~~~~~~I~~dL~~LGl~~D~~~~~qSer~~~y~~~~~~L~~~G~ 97 (298)
T 1nzj_A 51 --R--E-----------------------------VPGAAETILRQLEHYGLHWDGDVLWQSQRHDAYREALAWLHEQGL 97 (298)
T ss_dssp --G--S-----------------------------CTTHHHHHHHHHHHTTCCCSSCCEEGGGCHHHHHHHHHHHHHTTC
T ss_pred --h--h-----------------------------HHHHHHHHHHHHHHcCCCCCCCCeeeeCCHHHHHHHHHHHHHcCC
Confidence 0 0 112335777899999999863 3356666778899999999999
Q ss_pred eEee--------------------------cCeEEEEec-------------------CCCCCeEEEcCCCcccccchhH
Q 010832 292 VEES--------------------------QGARVIFIE-------------------GVNIPLIIVKSDGGFNYASTDL 326 (499)
Q Consensus 292 ~y~~--------------------------dGa~~~~~~-------------------g~~~d~vl~ksDG~~~Y~t~Di 326 (499)
+|.. ..+++++++ ++..|+||+|+||.|+|. +
T Consensus 98 aY~c~ct~~~l~~~~~~Y~g~cr~~~~~g~~~~~R~r~~~~~~~f~D~~~G~~~~~~~~~~~D~VL~R~dG~PtY~---l 174 (298)
T 1nzj_A 98 SYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLAREDFIIHRRDGLFAYN---L 174 (298)
T ss_dssp EEEECCCHHHHHHTTSSCCCTTTTTCCCSTTCEEEECCSSCCCEEEETTTEEEECCHHHHHSCCEEECTTSCBCHH---H
T ss_pred cccCcCCHHHHHHcCCCCCCccccCCcCCCCCcEEEecCCcccceehhhCcccccCcccCCCCEEEECCCCCEeee---e
Confidence 9973 136666543 123689999999999995 8
Q ss_pred HHHHHHHhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccHHHHH
Q 010832 327 AALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLL 406 (499)
Q Consensus 327 A~~~~k~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~dll 406 (499)
|++.++. ..+.+++| .|.||..+-+++..+.+++|+. .+.+.|++ +|.+.+|+|||||.|++ +++++-
T Consensus 175 a~vvdD~-~~giThvI--rG~D~l~~t~~q~~l~~alG~~------~p~~~H~p--ll~~~~g~KLSKR~g~~-~v~~~~ 242 (298)
T 1nzj_A 175 AVVVDDH-FQGVTEIV--RGADLIEPTVRQISLYQLFGWK------VPDYIHLP--LALNPQGAKLSKQNHAP-ALPKGD 242 (298)
T ss_dssp HHHHHHH-HTTCCEEE--EEGGGHHHHHHHHHHHHHHTCC------CCEEEEEC--BCCC--------------CCCSSC
T ss_pred eeeeEHH-hcCCCEEE--eCccccccHHHHHHHHHHcCCC------CCeEEEee--eeECCCCCcccccCCcc-ChhcCC
Confidence 8988887 57899987 5999988888888888999984 36789995 58778999999999988 676653
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCCCCCc
Q 010832 407 DEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNY 456 (499)
Q Consensus 407 ~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~~~~~ 456 (499)
+... ..+.+...|-.+.-. .++..+.+ +=.+++..|.+++-+.+++
T Consensus 243 ~~~~--~~~~l~~lG~~~~~~-~~~~~~~~-~l~~~~~~f~~~~~~~~~~ 288 (298)
T 1nzj_A 243 PRPV--LIAALQFLGQQAEAH-WQDFSVEQ-ILQSAVKNWRLTAVPESAI 288 (298)
T ss_dssp CHHH--HHHHHHHTTCCCCSC-GGGSCHHH-HHHHHHHTCCGGGSCCCSB
T ss_pred ccHH--HHHHHHHcCCCCCcc-cccCCHHH-HHHHHHHhCCHhhCCCCCC
Confidence 3321 233333332211100 01111111 0114567778877777664
No 23
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=99.85 E-value=7.8e-20 Score=206.33 Aligned_cols=134 Identities=18% Similarity=0.170 Sum_probs=100.9
Q ss_pred CCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHH
Q 010832 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (499)
Q Consensus 126 ~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~ 205 (499)
.++++.|....|||||.|||||+++.+++|+++|+.|+.||+|.+....+.+|.++...+. +..... +...
T Consensus 32 ~~~~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~ve---k~l~~~----g~~~-- 102 (862)
T 1gax_A 32 GKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVE---RLLLKE----GKTR-- 102 (862)
T ss_dssp CSCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHH---TTTTTT----TSCC--
T ss_pred CCCcEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCcHHHHHHH---HHHHHc----CCCh--
Confidence 4568999999999999999999999999999999999999999999999999987764432 111110 0000
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeecc-----ccccCcHH
Q 010832 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIP 280 (499)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~~e-----s~~~~~v~ 280 (499)
..+. .++|. +..+++++.+...+++.+++||+++||..+ ..|...+.
T Consensus 103 ---------~~~~-~~~f~------------------~~~~~~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~ 154 (862)
T 1gax_A 103 ---------HDLG-REKFL------------------ERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVR 154 (862)
T ss_dssp ---------SCCC-TTHHH------------------HHHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHH
T ss_pred ---------HHcC-HHHHH------------------HHHHHHHHHHHHHHHHHHHHhCccccCCCCcccCCHHHHHHHH
Confidence 0010 11232 333455788899999999999999998543 34556799
Q ss_pred HHHHHHHHCCCeEeec
Q 010832 281 GVIDELSKQGLVEESQ 296 (499)
Q Consensus 281 ~~i~~L~~~g~~y~~d 296 (499)
+++.+|.++|++|+..
T Consensus 155 ~~F~~L~~kGliYrg~ 170 (862)
T 1gax_A 155 YAFSRYYHEGLAYRAP 170 (862)
T ss_dssp HHHHHHHTTSSEEEEC
T ss_pred HHHHHHHHCCCEEecc
Confidence 9999999999999743
No 24
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=99.84 E-value=1.3e-20 Score=213.13 Aligned_cols=133 Identities=18% Similarity=0.179 Sum_probs=100.9
Q ss_pred CCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHH
Q 010832 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (499)
Q Consensus 126 ~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~ 205 (499)
.+++++|....|||||+|||||+|+.+++|+++|+.|+.||+|.+..+.+++|.++...+... .+.. ....+.+
T Consensus 36 ~~~~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~Glpie~~a~k~---l~~~---~~~~~~~ 109 (821)
T 1ile_A 36 GGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKK---LGLK---SKREIEA 109 (821)
T ss_dssp TSCBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHHHHHHHHHHH---TTCC---SHHHHHH
T ss_pred CCCcEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCCchHHHHHHHH---hccc---ccchHhh
Confidence 346788889999999999999999999999999999999999999999999999998665321 1110 1111111
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeec-----cccccCcHH
Q 010832 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG-----ESFYNPYIP 280 (499)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~~-----es~~~~~v~ 280 (499)
+ |.++..+.++++++.+.+.+++.+++||+.+||.. +..|...+.
T Consensus 110 ~------------------------------g~~~f~~~~~~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~ 159 (821)
T 1ile_A 110 Y------------------------------GIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIW 159 (821)
T ss_dssp H------------------------------CHHHHHHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHH
T ss_pred c------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHhCCeEccCCCeEECCHHHHHHHH
Confidence 1 12233344556677788899999999997776632 234556789
Q ss_pred HHHHHHHHCCCeEe
Q 010832 281 GVIDELSKQGLVEE 294 (499)
Q Consensus 281 ~~i~~L~~~g~~y~ 294 (499)
+++.+|.++|++|+
T Consensus 160 ~~f~~L~~~Gliy~ 173 (821)
T 1ile_A 160 WSLKNLFDRGLLYR 173 (821)
T ss_dssp HHHHHHHHTTCEEE
T ss_pred HHHHHHHHcCCeee
Confidence 99999999999996
No 25
>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumo 78578, structural genomics, PSI-2; HET: MSE; 2.20A {Klebsiella pneumoniae subsp}
Probab=99.84 E-value=8.9e-21 Score=161.66 Aligned_cols=103 Identities=26% Similarity=0.514 Sum_probs=87.5
Q ss_pred hhHhHHHHHHHHHHHHHHhhCCCCCCCccccccc-CCCCcccccchHHHHHHhhcCCCCCCCChHHHHHHHHHhCCCCCC
Q 010832 7 NTGNVKRELEKVFDLALKATVPNETDVRPLIAAC-TAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEM 85 (499)
Q Consensus 7 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~v~~~-~~~~gd~~~~~a~~lak~~~~~~~~~~~p~~iA~~i~~~l~~~~~ 85 (499)
.| ++++.+.+.|.+++...... ....+.+++| ++.||||+||+||.|||.+| ++|++||++|++.|+..+.
T Consensus 3 ~M-~i~~~l~~~i~~al~~~~~~-~~~~~~ve~p~~~~~GD~a~n~a~~lak~~~------~~P~~iA~~i~~~l~~~~~ 74 (109)
T 3gdz_A 3 AM-NIQALLSEKVSQALIAAGAP-ADCEPQVRQSAKVQFGDYQANGVMAVAKKLG------MAPRQLAEQVLSHLDLNGI 74 (109)
T ss_dssp CC-CHHHHHHHHHHHHHHHTTCC-TTCCCCEEECSSGGGCSEEECCHHHHHHHTT------SCHHHHHHHHHHHCCCTTT
T ss_pred cc-CHHHHHHHHHHHHHHHcCCC-ccCCceeecCCCCCcceeecHHHHHHHHHhC------CCHHHHHHHHHHhcCcCCc
Confidence 35 79999999999999875211 1233455555 68999999999999999999 9999999999999987778
Q ss_pred eeeEEEecCCeEEEEeChhHHHHHHHHHHHcC
Q 010832 86 IESCSVAGPGFVNVVLSKNWMAKNIQKMLVDG 117 (499)
Q Consensus 86 ~~~v~vag~GfiN~~l~~~~~~~~~~~~~~~~ 117 (499)
|++++++|||||||+|++.+|.+.+.+++.+.
T Consensus 75 i~~vevagpGFINf~l~~~~~~~~l~~il~~~ 106 (109)
T 3gdz_A 75 ANKVEIAGPGFINIFLDPAFLADNVNRALQSE 106 (109)
T ss_dssp EEEEEEETTTEEEEEECHHHHHHHHHHHHTTC
T ss_pred EeEEEEeCCCeEEEEECHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999888654
No 26
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=99.84 E-value=3.1e-20 Score=211.22 Aligned_cols=128 Identities=15% Similarity=0.188 Sum_probs=99.8
Q ss_pred CceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHH
Q 010832 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (499)
Q Consensus 127 ~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l 206 (499)
+++++|....|||||.|||||++|.+++|+++|+.++.||+|.+....+.+|.++...+... +-. . .
T Consensus 47 ~~~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~----G~~---~-~----- 113 (917)
T 1ffy_A 47 NETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKK----GVD---R-K----- 113 (917)
T ss_dssp SCBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHH----TCC---S-T-----
T ss_pred CCceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHc----CCC---c-h-----
Confidence 45788989999999999999999999999999999999999999999999999998665331 100 0 0
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeecc-----ccccCcHHH
Q 010832 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-----SFYNPYIPG 281 (499)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~~e-----s~~~~~v~~ 281 (499)
.+ ...+|. +..++++..+.+.+++.+++||+.+||..+ ..|...+.+
T Consensus 114 ---------~~-~~~~f~------------------~~~~~~~~~~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~~~~v~~ 165 (917)
T 1ffy_A 114 ---------KM-STAEFR------------------EKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIR 165 (917)
T ss_dssp ---------TT-CHHHHH------------------HHHHHHHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHH
T ss_pred ---------hC-CHHHHH------------------HHHHHHHHHHHHHHHHHHHHhCeEEccCCCeEcCCHHHHHHHHH
Confidence 00 001222 334556778889999999999999987432 235567899
Q ss_pred HHHHHHHCCCeEee
Q 010832 282 VIDELSKQGLVEES 295 (499)
Q Consensus 282 ~i~~L~~~g~~y~~ 295 (499)
++.+|.++|++|+.
T Consensus 166 ~F~~l~~kGliYr~ 179 (917)
T 1ffy_A 166 IFGEMADKGLIYKG 179 (917)
T ss_dssp HHHHHHHTTCEEEE
T ss_pred HHHHHHHcCCeEec
Confidence 99999999999963
No 27
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=99.82 E-value=5.2e-19 Score=200.33 Aligned_cols=116 Identities=18% Similarity=0.198 Sum_probs=92.5
Q ss_pred CceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHH
Q 010832 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGEL 206 (499)
Q Consensus 127 ~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l 206 (499)
++++.|-...|||+|++||||+|+.+++|+|+|++|+.||+|.++.+.+++|.++...+.. .+
T Consensus 32 ~~k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k-----------~g------ 94 (878)
T 2v0c_A 32 RGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALK-----------FG------ 94 (878)
T ss_dssp --EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHH-----------TT------
T ss_pred CCCEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHH-----------cC------
Confidence 3456665678999999999999999999999999999999999999999999877643311 00
Q ss_pred HHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeec-----cccccCcHHH
Q 010832 207 QEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG-----ESFYNPYIPG 281 (499)
Q Consensus 207 ~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~~-----es~~~~~v~~ 281 (499)
. ++ +++++.+...|++++++||+++||.. +..|...+.+
T Consensus 95 ------------~------------------~~------~~~~~~~~~~~~~~~~~LGi~~Dw~~~~~T~d~~~~~~v~~ 138 (878)
T 2v0c_A 95 ------------V------------------HP------KDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQW 138 (878)
T ss_dssp ------------C------------------CH------HHHHHHHHHHHHHHHHHTTCCCCGGGCCBTTSHHHHHHHHH
T ss_pred ------------C------------------CH------HHHHHHHHHHHHHHHHHhCCccCcCCCeecCCHHHHHHHHH
Confidence 0 11 24577888999999999999999732 3456677899
Q ss_pred HHHHHHHCCCeEee
Q 010832 282 VIDELSKQGLVEES 295 (499)
Q Consensus 282 ~i~~L~~~g~~y~~ 295 (499)
++.+|.++|++|+.
T Consensus 139 ~f~~L~~kGliY~~ 152 (878)
T 2v0c_A 139 IFLKMWEKGLAYRA 152 (878)
T ss_dssp HHHHHHHTTCEEEE
T ss_pred HHHHHHHCCCEEEc
Confidence 99999999999973
No 28
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=99.82 E-value=5.2e-19 Score=199.28 Aligned_cols=117 Identities=22% Similarity=0.206 Sum_probs=93.8
Q ss_pred CCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHH
Q 010832 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGE 205 (499)
Q Consensus 126 ~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~ 205 (499)
.++++.|.-.-|||||+|||||+|+.+++|+|+|++|+.||+|.+..+++|+|.++...+.. .+
T Consensus 51 ~~~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~-----------~g----- 114 (880)
T 4arc_A 51 SKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVK-----------NN----- 114 (880)
T ss_dssp TSCEEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHH-----------TT-----
T ss_pred CCCCEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHH-----------cC-----
Confidence 34567776778999999999999999999999999999999999999999999988644311 00
Q ss_pred HHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeec-----cccccCcHH
Q 010832 206 LQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKG-----ESFYNPYIP 280 (499)
Q Consensus 206 l~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~~-----es~~~~~v~ 280 (499)
..| +++++.+...|++.+++||+++||.. +..|...+.
T Consensus 115 -------------~~p------------------------~~~~~~~i~~~~~~l~~LGis~Dw~~~~~T~d~~~~~~v~ 157 (880)
T 4arc_A 115 -------------TAP------------------------APWTYDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQ 157 (880)
T ss_dssp -------------SCH------------------------HHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHH
T ss_pred -------------CCH------------------------HHHHHHHHHHHHHHHHHhCCCcCCCCCEEcCCHHHHHHHH
Confidence 011 13456677889999999999998742 234566789
Q ss_pred HHHHHHHHCCCeEee
Q 010832 281 GVIDELSKQGLVEES 295 (499)
Q Consensus 281 ~~i~~L~~~g~~y~~ 295 (499)
+++.+|.++|++|+.
T Consensus 158 ~~f~~L~ekGliY~~ 172 (880)
T 4arc_A 158 KFFTELYKKGLVYKK 172 (880)
T ss_dssp HHHHHHHHTTCEEEE
T ss_pred HHHHHHHHCCCEEEe
Confidence 999999999999963
No 29
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=99.82 E-value=3e-19 Score=188.24 Aligned_cols=266 Identities=16% Similarity=0.202 Sum_probs=185.6
Q ss_pred ceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHHH
Q 010832 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (499)
Q Consensus 128 ~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (499)
.+|.+=|. |+|||+|||||+|++++....||- +....+--|.|...+
T Consensus 24 ~~v~~RFA-PSPTG~lHiG~~rtal~n~l~Ar~-----~~G~filRieDtD~~--------------------------- 70 (490)
T 4g6z_A 24 RPVRTRFA-PSPTGFIHLGNIRSALYPWAFARK-----MKGTFVLRIEDTDVE--------------------------- 70 (490)
T ss_dssp CCCEEEEC-CCCCSCCBHHHHHHHHHHHHHHHH-----TTCEEEEEECCCCGG---------------------------
T ss_pred CCceEEeC-CCCCCCccHHHHHHHHHHHHHHHh-----cCCeEEEEeCCCCcc---------------------------
Confidence 45666565 999999999999999987777763 344555555563110
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeee--eccccccCcHHHHHHH
Q 010832 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE--KGESFYNPYIPGVIDE 285 (499)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~--~~es~~~~~v~~~i~~ 285 (499)
+.+..+.+.+.++|+.||+..|. +..|.+.+...+++++
T Consensus 71 ---------------------------------------R~~~~~~~~i~~dl~wlGl~~d~~~~~qS~r~~~y~~~~~~ 111 (490)
T 4g6z_A 71 ---------------------------------------RSSQEAVDAILEGMAWLGLDYDEGPYYQMQRMDRYREVLAQ 111 (490)
T ss_dssp ---------------------------------------GCCHHHHHHHHHHHHHTTCCCSEEEEEGGGCHHHHHHHHHH
T ss_pred ---------------------------------------cccHHHHHHHHHHHHHcCCCCCCCCcccccCHHHHHHHHHH
Confidence 00123345677799999999863 3456666778899999
Q ss_pred HHHCCCeEee----------------cC-----------------------e-EEEEec--------------C------
Q 010832 286 LSKQGLVEES----------------QG-----------------------A-RVIFIE--------------G------ 305 (499)
Q Consensus 286 L~~~g~~y~~----------------dG-----------------------a-~~~~~~--------------g------ 305 (499)
|.++|++|.. .| . .++++. |
T Consensus 112 Li~~G~aY~C~ct~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~~~~g~~~~~R~k~~~~~~~~~~D~i~G~~~~~~ 191 (490)
T 4g6z_A 112 MQEKGLVYPCYMSTEELDALRERQRAAGEKPRYDGTWRPEPGKVLPEPPAGVAPVLRFRNPLTGTVAWDDAVKGRVEISN 191 (490)
T ss_dssp HHHTTSEEEECC-------------------CCCCTTCCCTTCCCCCCCTTCCCEEEECCCCSSEEEEEETTTEEEEEEG
T ss_pred HHHCCCEEeCCCCHHHHHHHHHHHHhcCCCCCCCcccccCChhhhhhhhcCCCceEEEecCCCCcEEEEEeeeeeeeecc
Confidence 9999999830 00 0 012221 1
Q ss_pred -CCCCeEEEcCCCcccccchhHHHHHHHHhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEE
Q 010832 306 -VNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLV 384 (499)
Q Consensus 306 -~~~d~vl~ksDG~~~Y~t~DiA~~~~k~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V 384 (499)
.-.|+||.|+||.|||. +|..++.. ..+.+++| .|.||....+++..+.++||+. .+.+.|++ +|
T Consensus 192 ~~~~D~Vl~R~DG~ptY~---lA~vVDD~-~mgIThVi--RG~D~l~~tprq~~l~~aLG~~------~P~f~Hlp--Li 257 (490)
T 4g6z_A 192 EELDDLVVARPDGTPMYN---FCVVVDDL-DMGITHVI--RGDDHVNNTPRQINILRALGGE------VPVYAHLP--TV 257 (490)
T ss_dssp GGCCCCEEECTTSCBCHH---HHHHHHHH-HTTCCEEE--EEGGGGGGHHHHHHHHHHTTCC------CCEEEEEC--CE
T ss_pred ccCCCeEEEeeCCCccch---hHHHHHHH-hcCCCEEE--eccccccChHHHHHHHHHcCCC------CCeEEEec--ce
Confidence 12589999999999998 57778887 57899996 8999999999998999999995 46899995 58
Q ss_pred ecCCCCccccccCCcccHHHHHHHHH--HHHHHHHHHhcCCCCCCHHHHHHHHHHhh-hhHHHHHhhcCCCCCCccccHH
Q 010832 385 LGEDGKRLRTRFSEVVRLVDLLDEAK--NRSKAVLIERGKDKEWTEEELEQTAEAVG-YGAAKYFDLKNNRLTNYTFSFD 461 (499)
Q Consensus 385 ~~~~g~KMSkR~G~~v~l~dll~e~~--~~a~~~~~~~~~~~~~~~~~~~~~a~~vg-~~airy~~L~~~~~~~~~Fd~~ 461 (499)
.+.+|+|||||.|. +++.++.+.+. +...+.+.. .+|+..+. +.+. .+.+..|++.+-..++..||++
T Consensus 258 ~~~~g~KLSKR~g~-~sl~~~r~~G~~peal~n~l~~----lG~s~~~~----e~~s~~eli~~F~~~~~~~~~~~fd~~ 328 (490)
T 4g6z_A 258 LNEQGEKMSKRHGA-MSVMGYRDAGYLPEAVLNYLAR----LGWSHGDA----EIFTREQFVEWFDLEHLGKSPAQYDHN 328 (490)
T ss_dssp ECTTSSBCCTTTTC-CBHHHHHHTTCCHHHHHHHHHT----SSBCCTTC----CCCCHHHHHHHCCGGGBCSSCEECCHH
T ss_pred eCCCCCcccCCCCC-cCHHHHHHCCCCHHHHHHHHHH----hCCCCCCc----cccCHHHHHhhCCHhhCCCCCCccCHH
Confidence 88999999999995 68999887754 334554442 23332110 0011 3567899999999999999999
Q ss_pred HHhcccCCchhHHH-----HHHHHHHHHHHHhCCC
Q 010832 462 QMLNDKGNTAVYLL-----YAHARICSIIRKSGKD 491 (499)
Q Consensus 462 ~~~~~~~n~~~Ylq-----Ya~aR~~silrk~~~~ 491 (499)
++..+|+ -||+ --..++...+++++.+
T Consensus 329 KL~~~N~---~~i~~~~~~~l~~~~~~~l~~~~~~ 360 (490)
T 4g6z_A 329 KLNWLNN---HYIKEADDARLAGLAKPFFAALGID 360 (490)
T ss_dssp HHHHHHH---HHHHHSCHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHH---HHHHhCCHHHHHHHHHHHHHHcCCC
Confidence 9999864 3433 1223455555566654
No 30
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=99.82 E-value=1.7e-19 Score=191.40 Aligned_cols=239 Identities=17% Similarity=0.113 Sum_probs=170.5
Q ss_pred cCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHHHHHHHHHh
Q 010832 135 SSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSK 214 (499)
Q Consensus 135 ~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~ 214 (499)
..|+|||+|||||+|++++ |.|.+.++.+.++--|.|... ..
T Consensus 6 FAPSPtG~lHiG~artal~-----n~l~Ar~~~G~filRieDtD~-------------------~R-------------- 47 (492)
T 2cfo_A 6 LAPSPTGNLHIGTARTAVF-----NWLYARHRGGKFILRIEDTDR-------------------ER-------------- 47 (492)
T ss_dssp ECCCTTSCCBHHHHHHHHH-----HHHHHHHTTCEEEEEECCCSS-------------------SS--------------
T ss_pred eCCCCCCCccHHHHHHHHH-----HHHHHHhcCCeEEEEEeeCCc-------------------cc--------------
Confidence 4699999999999999988 556666677888888888521 00
Q ss_pred cccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeee--eccccccCcHHHHHHHHHHCCCe
Q 010832 215 NRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE--KGESFYNPYIPGVIDELSKQGLV 292 (499)
Q Consensus 215 ~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~--~~es~~~~~v~~~i~~L~~~g~~ 292 (499)
. +..+.+.+.++|+.||+..|. +..|.+.+...+++++|.++|++
T Consensus 48 ----~-----------------------------~~~~~~~i~~dL~wLGl~wde~~~~QS~r~~~y~~~~~~Li~~G~A 94 (492)
T 2cfo_A 48 ----S-----------------------------RPEYTENILEGLQWLGLTWDEGPYFQSDRLDLYRQAIQTLLDKGLA 94 (492)
T ss_dssp ----C-----------------------------CHHHHHHHHHHHHHTTCCCSEEEEEGGGCHHHHHHHHHHHHHTTSE
T ss_pred ----c-----------------------------chHHHHHHHHHHHHcCCCCCCCCccccCCHHHHHHHHHHHHHCCCc
Confidence 0 112235667788899988753 33466666677888888888888
Q ss_pred Eee-----------------------c-----------------Ce-EEEEec---------------------CCC-CC
Q 010832 293 EES-----------------------Q-----------------GA-RVIFIE---------------------GVN-IP 309 (499)
Q Consensus 293 y~~-----------------------d-----------------Ga-~~~~~~---------------------g~~-~d 309 (499)
|.. + |. .++++. ... .|
T Consensus 95 Y~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~~~~~~~~~~~D 174 (492)
T 2cfo_A 95 YYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAAFEAAGRTPVIRFKIEDDRQIEWQDLVRGRVSWQGADLGGD 174 (492)
T ss_dssp EEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCTTCEEEEEETTTEEEEEEGGGGCSS
T ss_pred eEecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHhCCCCceEEEEcCCCCceEEEecceeeeeecccccCCC
Confidence 831 1 21 122221 122 58
Q ss_pred eEEEcCC-----CcccccchhHHHHHHHHhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEE
Q 010832 310 LIIVKSD-----GGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLV 384 (499)
Q Consensus 310 ~vl~ksD-----G~~~Y~t~DiA~~~~k~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V 384 (499)
+||+|+| |.|+|. +|..++.. ..+.+++| .|.||..+-+++..+.+++|+. .+.|.|++ +|
T Consensus 175 ~Vl~R~d~~p~~G~PtY~---la~vvDD~-~~gIthvi--RG~D~~~~t~~q~~l~~alg~~------~P~~~H~p--li 240 (492)
T 2cfo_A 175 MVIARAAPRGEIGYPLYN---LVVVVDDI-AMGITDVI--RGEDHIGNTPKQILLYEALGAT------PPNFAHTP--LI 240 (492)
T ss_dssp EEEECSCCTTSCCCBCHH---HHHHHHHH-HTTCSEEE--EEGGGTTHHHHHHHHHHHTTCC------CCEEEEEC--CE
T ss_pred eEEEEecCCCCCCceeeh---hhhhhhhh-cCCCCeEE--EchhhhhCHHHHHHHHHHcCCC------CceEEEee--eE
Confidence 9999999 999997 56667776 57899985 9999999999988889999984 36899994 58
Q ss_pred ecCCCCccccccCCcccHHHHHHHHH--HHHHHHHHHhcCCCCCCH----HHHHHHHHHhhhhHHHHHhhcCCCCCCccc
Q 010832 385 LGEDGKRLRTRFSEVVRLVDLLDEAK--NRSKAVLIERGKDKEWTE----EELEQTAEAVGYGAAKYFDLKNNRLTNYTF 458 (499)
Q Consensus 385 ~~~~g~KMSkR~G~~v~l~dll~e~~--~~a~~~~~~~~~~~~~~~----~~~~~~a~~vg~~airy~~L~~~~~~~~~F 458 (499)
++.+|+|||||.|++ ++.++.+.+. +..++.+..- +|++ .++.. -.+.++.|++.+-+.++..|
T Consensus 241 l~~~g~KLSKr~g~~-~l~~~r~~G~~peal~~~l~~l----G~s~~~~~~e~~~-----~~e~i~~f~~~~i~~~~~~~ 310 (492)
T 2cfo_A 241 LNSTGQKLSKRDGVT-SISDFRAMGYLAPALANYMTLL----GWSPPEGVGELFT-----LDLAAKHFSFERINKAGARF 310 (492)
T ss_dssp ECSSSSBCCTTSSCC-BHHHHHHTTCCHHHHHHHHHHT----TBCCCTTTCSCCC-----HHHHHHHCCSTTBCSSCEEC
T ss_pred ECCCCCEecccCCcc-cHHHHHHCCCCHHHHHHHHHHh----CCCCCCccccccC-----HHHHHhhcChhhcCcccccc
Confidence 889999999999987 8999887643 2334444432 2221 11111 11457899999999999999
Q ss_pred cHHHHhcccC
Q 010832 459 SFDQMLNDKG 468 (499)
Q Consensus 459 d~~~~~~~~~ 468 (499)
|++++..+|+
T Consensus 311 d~~kl~~~N~ 320 (492)
T 2cfo_A 311 DWDKLNWLNR 320 (492)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999988864
No 31
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=99.79 E-value=1.6e-18 Score=182.85 Aligned_cols=158 Identities=16% Similarity=0.155 Sum_probs=113.2
Q ss_pred CCeEEEcCCCcccccchhHHHHHHHHhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecC
Q 010832 308 IPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE 387 (499)
Q Consensus 308 ~d~vl~ksDG~~~Y~t~DiA~~~~k~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~ 387 (499)
.|+||+|+||.|||.. |..++.. ..+.+++ |+|.||..+.+++..+.+++|+. .+.+.|+ .++.+.
T Consensus 174 ~D~Vl~R~dg~PtY~~---a~vvDD~-~~githv--irG~D~~~~t~~q~~l~~alg~~------~p~~~h~--~li~~~ 239 (468)
T 1j09_A 174 PDVVLLKSDGYPTYHL---ANVVDDH-LMGVTDV--IRAEEWLVSTPIHVLLYRAFGWE------APRFYHM--PLLRNP 239 (468)
T ss_dssp CCCEEECTTSCBCHHH---HHHHHHH-HTTCCEE--EEEGGGGGGHHHHHHHHHHHTCC------CCEEEEE--CCCBCT
T ss_pred CCeEEEecCCCeeehh---HHHHHHH-HCCCCeE--EEChhhhhhHHHHHHHHHHcCCC------CCeEEEe--eeeeCC
Confidence 5899999999999974 5556766 4789998 59999999999999999999994 3588898 458888
Q ss_pred CCCccccccCCcccHHHHHHHHH--HHHHHHHHHhcCCCCCCHHHHHHHHHHhh-hhHHHHHhhcCCCCCCccccHHHHh
Q 010832 388 DGKRLRTRFSEVVRLVDLLDEAK--NRSKAVLIERGKDKEWTEEELEQTAEAVG-YGAAKYFDLKNNRLTNYTFSFDQML 464 (499)
Q Consensus 388 ~g~KMSkR~G~~v~l~dll~e~~--~~a~~~~~~~~~~~~~~~~~~~~~a~~vg-~~airy~~L~~~~~~~~~Fd~~~~~ 464 (499)
+|+|||||+|+. ++.++.+.+. +...+.+..- +|++.+..+ .+. .+.+..|.+.+-+.++..||++++.
T Consensus 240 ~g~klSKR~g~~-~l~~~~~~G~~peal~~~l~~l----G~~~~~~~~---~~~~~el~~~f~~~~~~~~~~~~d~~kl~ 311 (468)
T 1j09_A 240 DKTKISKRKSHT-SLDWYKAEGFLPEALRNYLCLM----GFSMPDGRE---IFTLEEFIQAFTWERVSLGGPVFDLEKLR 311 (468)
T ss_dssp TSCBCCTTTSCC-BHHHHHHTTCCHHHHHHHHHHH----SCCCTTCCS---CCCHHHHHHHCCGGGCCCSCCBCCHHHHH
T ss_pred CCCccccccchh-hHHHHHHCCCCHHHHHHHHHHh----ccCCccccc---CCCHHHHHhhCChhhcCccccccChHHhh
Confidence 999999999988 8999887643 3334444332 222110000 011 1357899999999999999999999
Q ss_pred cccCCchhHHHH------HHHHHHHHHHHhCC
Q 010832 465 NDKGNTAVYLLY------AHARICSIIRKSGK 490 (499)
Q Consensus 465 ~~~~n~~~YlqY------a~aR~~silrk~~~ 490 (499)
.+|+ -||+- -..|+...+++.+.
T Consensus 312 ~~N~---~~i~~~~~~~~l~~~~~~~~~~~~~ 340 (468)
T 1j09_A 312 WMNG---KYIREVLSLEEVAERVKPFLREAGL 340 (468)
T ss_dssp HHHH---HHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred hhcH---HHHHhcCCHHHHHHHHHHHHHHcCC
Confidence 8863 34432 12355555666654
No 32
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=99.76 E-value=7e-18 Score=178.77 Aligned_cols=137 Identities=16% Similarity=0.108 Sum_probs=106.4
Q ss_pred CCeEEEcCCCcccccchhHHHHHHHHhhcCCCeEEEEecCCccccHHHHHHHHHHc-----CCCCCCCCCCCcEEEEEeE
Q 010832 308 IPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRA-----GWLSADDSTYPKASHVGFG 382 (499)
Q Consensus 308 ~d~vl~ksDG~~~Y~t~DiA~~~~k~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~l-----G~~~~~~~~~~~~~Hv~~g 382 (499)
.|+||+|+||.|||. +|..++.. ..+++++| .|.||..+.+++..+.+++ |+. .+.+.|+++
T Consensus 183 ~D~Vi~R~Dg~ptY~---lA~vVDD~-~mgithvi--RG~D~~~~t~~q~~l~~aL~~~g~g~~------~P~~~h~pl- 249 (498)
T 2ja2_A 183 PDFALTRASGDPLYT---LVNPCDDA-LMKITHVL--RGEDLLPSTPRQLALHQALIRIGVAER------IPKFAHLPT- 249 (498)
T ss_dssp CCCBSBCTTSCBCHH---HHHHHHHH-HTTCCEEE--EEGGGGGGHHHHHHHHHHHHHTTSCCC------CCEEEEECC-
T ss_pred CcceeEccCCCcchh---hHHHHHhh-hcCCCEEE--EChhhhhccHHHHHHHHHHHhhcCCCC------CCeEEEeee-
Confidence 588999999999998 56677876 57999995 9999999999998999999 984 368999954
Q ss_pred EEecCCCCccccccCCcccHHHHHHHHH--HHHHHHHHHhcCCCCCCHH---HHHHHHHHhhhhHHHHHhhcCCCCCCcc
Q 010832 383 LVLGEDGKRLRTRFSEVVRLVDLLDEAK--NRSKAVLIERGKDKEWTEE---ELEQTAEAVGYGAAKYFDLKNNRLTNYT 457 (499)
Q Consensus 383 ~V~~~~g~KMSkR~G~~v~l~dll~e~~--~~a~~~~~~~~~~~~~~~~---~~~~~a~~vg~~airy~~L~~~~~~~~~ 457 (499)
+.+.+|+|||||+|+ ++++++.+.+. +...+.+.. .+|++. ++..+ .+.+..|++.+-+.++..
T Consensus 250 -il~~~g~KLSKR~g~-~~l~~~r~~G~~peAl~~~l~~----lG~s~~~~~e~~s~-----~eli~~f~~~~~~~~~a~ 318 (498)
T 2ja2_A 250 -VLGEGTKKLSKRDPQ-SNLFAHRDRGFIPEGLLNYLAL----LGWSIADDHDLFGL-----DEMVAAFDVADVNSSPAR 318 (498)
T ss_dssp -EECSSSSBCCTTSGG-GBHHHHHHHTCCHHHHHHHHHT----SSCCSCSSCCCCCH-----HHHHHHCCGGGCCCSCEE
T ss_pred -eECCCCCcccccCCc-ccHHHHHhCCCCHHHHHHHHHH----hCCCCCcccccCCH-----HHHHhhCChhhcCccccc
Confidence 878899999999997 58999988653 333444432 233310 11111 135889999999999999
Q ss_pred ccHHHHhcccC
Q 010832 458 FSFDQMLNDKG 468 (499)
Q Consensus 458 Fd~~~~~~~~~ 468 (499)
||++++..+|+
T Consensus 319 fd~~kL~~~N~ 329 (498)
T 2ja2_A 319 FDQKKADALNA 329 (498)
T ss_dssp CCHHHHHHHHH
T ss_pred cCHHHHHHhhH
Confidence 99999999864
No 33
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.74 E-value=4.4e-18 Score=180.91 Aligned_cols=228 Identities=13% Similarity=0.077 Sum_probs=153.8
Q ss_pred ceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHHH
Q 010832 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (499)
Q Consensus 128 ~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (499)
.+|+. =-.|+|||+|||||+|++++- .|.+.+|.+.++-.++|....
T Consensus 95 g~v~t-RFaPsPtG~LHIGhaRtal~n-----~l~Ar~~~G~~iLRieDtD~~--------------------------- 141 (553)
T 3aii_A 95 GEVVL-RFAPNPSGPLHIGHARAAILN-----HEYARKYDGRLILRIEDTDPR--------------------------- 141 (553)
T ss_dssp SCCEE-EECCCSSSSCBHHHHHHHHHH-----HHHHHHTTCEEEEEECCCCGG---------------------------
T ss_pred CceEE-EeCCCCCCCccHHHHHHHHHH-----HHHHHHcCCEEEEEECcCCcc---------------------------
Confidence 34554 567999999999999999985 444457888888888884220
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeee-eccccccCcHHHHHHHH
Q 010832 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEE-KGESFYNPYIPGVIDEL 286 (499)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~-~~es~~~~~v~~~i~~L 286 (499)
+ . ...+.+.|.++++.||+..|. ...|.|.+...+++++|
T Consensus 142 --------R--~-----------------------------~~e~~~~I~edL~wLGl~wd~~~~qSdr~~~y~~~~~~L 182 (553)
T 3aii_A 142 --------R--V-----------------------------DPEAYDMIPADLEWLGVEWDETVIQSDRMETYYEYTEKL 182 (553)
T ss_dssp --------G--C-----------------------------CTTHHHHHHHHHHHHTCCCSEEEEGGGGHHHHHHHHHHH
T ss_pred --------c--c-----------------------------cHHHHHHHHHHHHHcCCCCCCCcccccCHHHHHHHHHHH
Confidence 0 0 112235677789999998853 33577777888999999
Q ss_pred HHCCCeEeec-----------------------------------C---eEEEEecC-------CCCCeEEEcC------
Q 010832 287 SKQGLVEESQ-----------------------------------G---ARVIFIEG-------VNIPLIIVKS------ 315 (499)
Q Consensus 287 ~~~g~~y~~d-----------------------------------G---a~~~~~~g-------~~~d~vl~ks------ 315 (499)
+++|++|... | ..++++.. ...|+||+|.
T Consensus 183 i~~G~AY~c~cs~eei~~~r~~g~~~~cR~~s~ee~l~~f~~m~~G~~g~~~lR~k~d~~~~n~~~~Dfvl~R~~~~~hp 262 (553)
T 3aii_A 183 IERGGAYVCTCRPEEFRELKNRGEACHCRSLGFRENLQRWREMFEMKEGSAVVRVKTDLNHPNPAIRDWVSMRIVEAEHP 262 (553)
T ss_dssp HHTTSEEEECSCHHHHHHHHHTTCCCGGGGCCHHHHHHHHHHGGGSCTTSCEEEECCCTTCSSGGGTTCEEEEECCSCBT
T ss_pred HHcCCceeCCCCHHHHHHHhhcCCCCccccCCHHHHHHHHHHHhcCCcCceEEEEEcccccCCCCCCCcEEEEecCCCCC
Confidence 9999998410 1 13444432 1247899886
Q ss_pred ---CCcccccchhHHHHHHHHhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCcc
Q 010832 316 ---DGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRL 392 (499)
Q Consensus 316 ---DG~~~Y~t~DiA~~~~k~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KM 392 (499)
|+=-.|.+=|+|..++.. ..+.+++| .|.||..+-+++..+.+++|+. .+.+.|+ ++|+ .+|+||
T Consensus 263 ~~Gd~~~g~PtYhfa~~vDD~-~~GIThvi--RG~D~~~nt~~Q~~l~~alG~~------~P~y~H~--~~L~-~~g~KL 330 (553)
T 3aii_A 263 RTGTRYRVYPMMNFSVAVDDH-LLGVTHVL--RGKDHLANREKQEYLYRHLGWE------PPEFIHY--GRLK-MDDVAL 330 (553)
T ss_dssp TTBTSCCEEECHHHHHHHHHH-HTTCCEEE--C-----CHHHHHHHHHHHHTCC------CCEEECC--CCBC-------
T ss_pred ccCCCceeeeeeeeeeeeeec-cCCCceEe--ccHhhhhCHHHHHHHHHHcCCC------CCeEEEe--eEEe-cCCcee
Confidence 210124444577777765 57899986 8999998888887778899983 3566698 5576 589999
Q ss_pred ccccCC---------------cccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhHHHHHhhcCCC-CCCc
Q 010832 393 RTRFSE---------------VVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNR-LTNY 456 (499)
Q Consensus 393 SkR~G~---------------~v~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~airy~~L~~~~-~~~~ 456 (499)
|||+|+ +.|+.+|++.+ +.++|||.|+++..+ +++.
T Consensus 331 SKR~~~~~v~~g~v~gWdDpr~~Ti~~lr~rG----------------------------~~PeaIr~fl~~~G~s~~~~ 382 (553)
T 3aii_A 331 STSGAREGILRGEYSGWDDPRLGTLRAIARRG----------------------------IRPEAIRKLMVEIGVKIADS 382 (553)
T ss_dssp -CHHHHHHHHHSSCCSTTCTTSCBHHHHHHTT----------------------------CCHHHHHHHHHHHTTCSSCB
T ss_pred chhhhhhhccccccccccCcchHHHHHHHHcC----------------------------CCHHHHHHHHHhcCCCCccc
Confidence 999997 66788887663 578999999999988 6899
Q ss_pred cccHHHHhccc
Q 010832 457 TFSFDQMLNDK 467 (499)
Q Consensus 457 ~Fd~~~~~~~~ 467 (499)
.|+|+.+.+++
T Consensus 383 ~~s~~~L~~~~ 393 (553)
T 3aii_A 383 TMSWKKIYGLN 393 (553)
T ss_dssp CCCHHHHHHHH
T ss_pred cccHHHHHHHH
Confidence 99999987653
No 34
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=99.74 E-value=1.7e-17 Score=177.57 Aligned_cols=137 Identities=18% Similarity=0.239 Sum_probs=107.4
Q ss_pred CCeEEEcCCCcccccchhHHHHHHHHhhcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecC
Q 010832 308 IPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE 387 (499)
Q Consensus 308 ~d~vl~ksDG~~~Y~t~DiA~~~~k~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~ 387 (499)
.|+||+|+||.|||. +|..++.. ..+.+++| .|.||-...+++..+.++||+. .+.+.|++ +|.+.
T Consensus 204 ~D~vi~r~dg~PtY~---fA~vVDD~-~mgITHVi--RG~D~l~sTp~q~~l~~alg~~------~P~y~H~p--li~~~ 269 (512)
T 4gri_A 204 PDPVILKSDGLPTYH---LANVVDDY-LMKITHVL--RAQEWVSSGPLHVLLYKAFKWK------PPIYCHLP--MVMGN 269 (512)
T ss_dssp SSCEEECTTSCBCHH---HHHHHHHH-HTTCSEEE--EEGGGGGGHHHHHHHHHHHTCC------CCEEEEEC--CCBCT
T ss_pred CceEEEecCCccccc---ccceeccc-ccCCceec--cccccccccHHHHHHHHHcCCC------CCeEEecc--hhccc
Confidence 478999999999995 67778877 47899996 9999999999888889999995 47899995 58889
Q ss_pred CCCccccccCCcccHHHHHHHHH--HHHHHHHHHhcCCCCCCHH---HHHHHHHHhhhhHHHHHhhcCCCCCCccccHHH
Q 010832 388 DGKRLRTRFSEVVRLVDLLDEAK--NRSKAVLIERGKDKEWTEE---ELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQ 462 (499)
Q Consensus 388 ~g~KMSkR~G~~v~l~dll~e~~--~~a~~~~~~~~~~~~~~~~---~~~~~a~~vg~~airy~~L~~~~~~~~~Fd~~~ 462 (499)
+|+|||||.| ..+++++.+++. ++..+.+..- +|+.. |+..+ .+.+.+|++.+-..++..||+++
T Consensus 270 ~g~kLSKR~~-~~~v~~~~~~G~lPeAl~NyLalL----Gws~~~~~Eifs~-----~eli~~Fdl~~v~ks~a~fD~~K 339 (512)
T 4gri_A 270 DGQKLSKRHG-STALRQFIEDGYLPEAIINYVTLL----GWSYDDKREFFSK-----NDLEQFFSIEKINKSPAIFDYHK 339 (512)
T ss_dssp TSSBCCTTTS-CCBHHHHHHHTCCHHHHHHHHHHS----SBCSSSSCCCCCH-----HHHHHHCCGGGBCSSCCBCCHHH
T ss_pred cccccCcccc-cccHHHHHHcCCChHHHHHHHHHh----CCCCcccchhhhH-----HHHHHHHHhcCCCCCCccccHHH
Confidence 9999999999 558999888866 3345555432 23221 11111 24578999999999999999999
Q ss_pred HhcccC
Q 010832 463 MLNDKG 468 (499)
Q Consensus 463 ~~~~~~ 468 (499)
+.++|+
T Consensus 340 L~~~N~ 345 (512)
T 4gri_A 340 LDFFNS 345 (512)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999864
No 35
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=99.71 E-value=6.1e-16 Score=177.40 Aligned_cols=138 Identities=18% Similarity=0.232 Sum_probs=101.1
Q ss_pred ceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHHHHHHHHhhCCCCCccccchHHHHH
Q 010832 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQ 207 (499)
Q Consensus 128 ~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l~ 207 (499)
++++|...-|||||.|||||++|.+++|+++|+.|+.||+|.+....+.+|.++...+..+.. ++.+..
T Consensus 34 ~kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~GwD~~GlPie~~a~~~~~--------~~~~~~--- 102 (967)
T 1wz2_A 34 KKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKN--------RDPKTI--- 102 (967)
T ss_dssp GCCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCBBCCSSHHHHHHHHHHT--------TCHHHH---
T ss_pred CcEEEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCCcCCCCCcHHHHHHHHhhc--------cchhHH---
Confidence 678999999999999999999999999999999999999999999999999999876643311 111110
Q ss_pred HHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeecc-------ccccCcHH
Q 010832 208 EFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE-------SFYNPYIP 280 (499)
Q Consensus 208 ~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~LgI~fd~~~e-------s~~~~~v~ 280 (499)
+.+. ..+.... +.+.++. + .++++..+...+++.+++||+.+||..+ ..|...+.
T Consensus 103 ~~~~---~~~gi~~-------~~~~~~~--~------~~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T~d~np~y~~~v~ 164 (967)
T 1wz2_A 103 WIYR---DVYKVPE-------EILWTFE--D------PINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIE 164 (967)
T ss_dssp HHHH---TTSCCCH-------HHHHGGG--S------HHHHHHHHHHHHHHHHHTTTCCCCTTSCCBCSTTSHHHHHHHH
T ss_pred HHHH---HhcCCCH-------HHHHHHH--H------HHHHHHHHHHHHHHHHHHhCceEecCCCeEECCCChhHHHHHH
Confidence 1111 1111111 0111111 1 2456888889999999999999998543 33456789
Q ss_pred HHHHHHHHCCCeEe
Q 010832 281 GVIDELSKQGLVEE 294 (499)
Q Consensus 281 ~~i~~L~~~g~~y~ 294 (499)
+++.+|.++|++|+
T Consensus 165 ~~F~~L~~kGliyr 178 (967)
T 1wz2_A 165 WQFWKLKEKGYIVK 178 (967)
T ss_dssp HHHHHTTTTTCEEE
T ss_pred HHHHHHHHCCCEEE
Confidence 99999999999996
No 36
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=99.64 E-value=2.3e-15 Score=160.15 Aligned_cols=212 Identities=12% Similarity=0.024 Sum_probs=142.4
Q ss_pred hHHHHHHHHHHHcCCCCCCCcCCCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHH
Q 010832 104 NWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGM 183 (499)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~ 183 (499)
.|+...+.+-+..+.. ++|+. =..|+|||+|||||+|++++-..+|| +|.+.++--|+|....
T Consensus 9 ~fi~~~i~~dl~~~~~--------~~v~t-RFaPSPtG~LHIGhaRtal~n~l~Ar-----~~gG~fiLRieDTD~~--- 71 (553)
T 1qtq_A 9 NFIRQIIDEDLASGKH--------TTVHT-RFPPEPNGYLHIGHAKSICLNFGIAQ-----DYKGQCNLRFDDTNPV--- 71 (553)
T ss_dssp CHHHHHHHHHHHHTSC--------SSCEE-EECCCTTSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCGG---
T ss_pred hHHHHHHHhHhhcCCc--------CceEE-EeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECCCCch---
Confidence 4666666665554432 12443 56799999999999999998666665 5677777777784210
Q ss_pred HHHHHHhhCCCCCccccchHHHHHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHc
Q 010832 184 LIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRL 263 (499)
Q Consensus 184 l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~L 263 (499)
+ .+..+.+.|.++|+.|
T Consensus 72 --------------------------------R-------------------------------~~~e~~~~I~edL~wL 88 (553)
T 1qtq_A 72 --------------------------------K-------------------------------EDIEYVESIKNDVEWL 88 (553)
T ss_dssp --------------------------------G-------------------------------CCHHHHHHHHHHHHHT
T ss_pred --------------------------------h-------------------------------cCHHHHHHHHHHHHHc
Confidence 0 0122345667788888
Q ss_pred CCeeee--eccccccCcHHHHHHHHHHCCCeEee--------------------------------------------cC
Q 010832 264 RVDLEE--KGESFYNPYIPGVIDELSKQGLVEES--------------------------------------------QG 297 (499)
Q Consensus 264 gI~fd~--~~es~~~~~v~~~i~~L~~~g~~y~~--------------------------------------------dG 297 (499)
|+..+. ...|.|.+.+.+.+++|+++|++|.. +|
T Consensus 89 Gl~wde~~~~qSer~~~~~~~a~~Li~~G~AY~c~ct~eel~~~r~~~~~~g~~~~~R~~s~ee~~~~fe~m~~G~~~~g 168 (553)
T 1qtq_A 89 GFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEG 168 (553)
T ss_dssp TCCCSSSCEEGGGGHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHCCSSSCCCCCTTTTCCHHHHHHHHHHHHTTCSCTT
T ss_pred CCCCCCCCeehcccHHHHHHHHHHHHHCCCceecCCCHHHHHHHhcccccCCCCCccccCchhhhHhHHHHHhCCCccCC
Confidence 888742 23466666666777888888888841 01
Q ss_pred eEEEEec-------CCCCCeEEEc---------CCC---cccccchhHHHHHHHHhhcCCCeEEEEecCCccccHHHHHH
Q 010832 298 ARVIFIE-------GVNIPLIIVK---------SDG---GFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFS 358 (499)
Q Consensus 298 a~~~~~~-------g~~~d~vl~k---------sDG---~~~Y~t~DiA~~~~k~~~~~~d~~i~V~g~~q~~hf~~~~~ 358 (499)
..+++.. ....|+||+| +|+ .|+|. +|..++.. ..+.+++| .|.+|..|-+....
T Consensus 169 ~~~lR~kid~~~~~~~~~D~Vl~R~~~~~h~~~~d~w~g~PtY~---la~vvDDh-~~GITHvi--Rg~e~~~n~~~q~~ 242 (553)
T 1qtq_A 169 KACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYD---FTHCISDA-LEGITHSL--CTLEFQDNRRLYDW 242 (553)
T ss_dssp SCEEEECSCTTCSSGGGSSCEEEEECCCCBTTTBTSCSEEECHH---HHHHHHHH-HTTCSEEE--EEGGGTTTHHHHHH
T ss_pred ceEEEEecccccCCCCCCCcEEEEecCCCCCccCCCCccccccc---cccEEEec-cCCcceEe--eccchhhhHHHHHH
Confidence 1223321 0114789998 553 56665 67777766 57899986 99999999988878
Q ss_pred HHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCC---------------cccHHHHHHHH
Q 010832 359 AAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSE---------------VVRLVDLLDEA 409 (499)
Q Consensus 359 ~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~---------------~v~l~dll~e~ 409 (499)
+.+++|+. .....| |. +.+. .+|+|||||+|+ +.|+.++++.+
T Consensus 243 l~~alg~~----~~P~~~-~f--~hLn-~~g~KLSKR~~~~~v~~g~v~gWDDPr~~Ti~~lr~rG 300 (553)
T 1qtq_A 243 VLDNITIP----VHPRQY-EF--SRLN-LEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRG 300 (553)
T ss_dssp HHHTSCCS----CCCEEE-EE--CCCC-BTTSCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHHT
T ss_pred HHHHcCCC----CCCCeE-EE--Eeec-CCCccccccccccccccCcccCCCCcchhhHHHHHHCC
Confidence 88999983 122344 54 5565 689999999986 67888988874
No 37
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=99.63 E-value=2.8e-15 Score=165.96 Aligned_cols=241 Identities=14% Similarity=0.032 Sum_probs=158.9
Q ss_pred hHHHHHHHHHHHcCCCCCCCcCCCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcchHHHH
Q 010832 104 NWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGM 183 (499)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~Qi~~ 183 (499)
.|+...+..-+..+.. ++|+. =..|+|||+|||||+|++++-..+|| +|.+.++-.|+|....
T Consensus 49 ~fi~~ii~~dl~~g~~--------~~v~t-RFaPSPtG~LHIGhARtAL~n~l~Ar-----~~gG~fiLRIEDTD~~--- 111 (851)
T 2hz7_A 49 NFITEIIERDLEAGKY--------PRVVT-RFPPDPSGYAHLGHVFASLLDFNTAR-----QYGGQFNLRMDDTNPE--- 111 (851)
T ss_dssp CHHHHHHHHHHHTTSC--------SSCEE-EECCCSSSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCTT---
T ss_pred HHHHHHHHHHhhcCCc--------CceEE-EeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECcCCcc---
Confidence 4677777666654432 12433 55899999999999999998555555 6777888888884210
Q ss_pred HHHHHHhhCCCCCccccchHHHHHHHHHHHhcccCCChHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHc
Q 010832 184 LIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRL 263 (499)
Q Consensus 184 l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~a~~~~~~~e~gd~~~~~~w~~~~~~~~~~~~~~~~~L 263 (499)
+ . ...+.+.|.++|+.|
T Consensus 112 --------------------------------R--~-----------------------------~~e~~~~IledL~wL 128 (851)
T 2hz7_A 112 --------------------------------L--A-----------------------------RQEYVDSIADDLKWL 128 (851)
T ss_dssp --------------------------------T--C-----------------------------CHHHHHHHHHHHHHH
T ss_pred --------------------------------c--c-----------------------------cHHHHHHHHHHHHHc
Confidence 0 0 122345677789999
Q ss_pred CCeee--eeccccccCcHHHHHHHHHHCCCeEeec----------------C----------------------------
Q 010832 264 RVDLE--EKGESFYNPYIPGVIDELSKQGLVEESQ----------------G---------------------------- 297 (499)
Q Consensus 264 gI~fd--~~~es~~~~~v~~~i~~L~~~g~~y~~d----------------G---------------------------- 297 (499)
|+..+ ....|.|.+...+++++|+++|++|... |
T Consensus 129 Gl~wde~~~~qSer~d~y~e~a~~LI~~G~AY~c~ct~eel~~~r~~~~~~G~~s~~R~ls~ee~l~~fe~m~~G~~~~g 208 (851)
T 2hz7_A 129 GLDWGEHFYYASDYFDRYYAYAEQLIRQGDAYVESVSPEELSRLRGNATTPGTPSPYRDRSVEENLDLLRRMKAGEFADG 208 (851)
T ss_dssp TCCCTTCEEEGGGGHHHHHHHHHHHHHTTSEEEECSCHHHHHHHHCBTTBCCCCCTTTTCCHHHHHHHHHHHHTTCSCTT
T ss_pred CCCCCCCcccHhhhHHHHHHHHHHHHHCCCcEeecCCHHHHHHHhcchhccCCCcccccCCHHHHhhHHHHHhcCCcccC
Confidence 99873 2335777777888999999999998421 1
Q ss_pred eEEEEec-------CCCCCeEEEcCCC-------cc--cccchhHHHHHHHHhhcCCCeEEEEecCCccccHHHHHHHHH
Q 010832 298 ARVIFIE-------GVNIPLIIVKSDG-------GF--NYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAK 361 (499)
Q Consensus 298 a~~~~~~-------g~~~d~vl~ksDG-------~~--~Y~t~DiA~~~~k~~~~~~d~~i~V~g~~q~~hf~~~~~~~~ 361 (499)
..++++. ....|+||+|++. ++ .|-+=++|..++.. ..+.+++| .|.+|..|-+....+.+
T Consensus 209 ~~vlR~Kid~~~~~~~~~DfVl~R~~~~~h~~~gd~w~g~PtYhfA~vVDD~-~~GITHVi--RG~D~~~n~~~q~~l~~ 285 (851)
T 2hz7_A 209 EHVLRAKIDLTAPNMKLRDPVLYRIVNKPHFRTSDEWHIYPAYDFEHPLQDA-IEGVTHSM--CSLEFVDNRAIYDWLME 285 (851)
T ss_dssp SCEEEECCCTTCSSGGGSSCEEEEECCCCBTTTBTSCSEEECHHHHHHHHHH-HHTCSEEE--EEGGGTTTHHHHHHHHH
T ss_pred CeeEEEeccccccCCCCCCcEEEEecCCCCCccCCCCccccccceeeEeeec-cCCcceee--cchhhhhChHHHHHHHH
Confidence 1122321 0114789999862 11 13344567767765 46899986 99999999998888889
Q ss_pred HcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCC---------------cccHHHHHHHHHHHHHHHHHHhcCCCCC
Q 010832 362 RAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSE---------------VVRLVDLLDEAKNRSKAVLIERGKDKEW 426 (499)
Q Consensus 362 ~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~---------------~v~l~dll~e~~~~a~~~~~~~~~~~~~ 426 (499)
++|+. ..++..|. +.+. .+|.|||||+|+ +.++.+|.+.+
T Consensus 286 alG~~-----~~P~~~~f--ahLn-~~g~KLSKR~g~~~v~~g~v~gwDDPr~~TI~~lr~rG----------------- 340 (851)
T 2hz7_A 286 KLNFD-----PRPHQYEF--GRRG-LEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLG----------------- 340 (851)
T ss_dssp HTTCS-----SCCEEEEE--CCEE-ETTCCCCHHHHHHHHHTTSSSSTTCTTSSBHHHHHHHT-----------------
T ss_pred HcCCC-----CCCCceEE--EEec-CCCccccccccccccccCcccCCCCcchhHHHHHHHcC-----------------
Confidence 99983 21332243 5565 478999999986 56788887764
Q ss_pred CHHHHHHHHHHhhhhHHHHHhhcCCCCC-CccccHHHH
Q 010832 427 TEEELEQTAEAVGYGAAKYFDLKNNRLT-NYTFSFDQM 463 (499)
Q Consensus 427 ~~~~~~~~a~~vg~~airy~~L~~~~~~-~~~Fd~~~~ 463 (499)
+.+++||.|+++..+.+ +..++|..+
T Consensus 341 -----------y~PeAIr~fl~~lG~s~~~~~~e~~~l 367 (851)
T 2hz7_A 341 -----------VTPEAVRAFAAQIGVSRTNRTVDIAVY 367 (851)
T ss_dssp -----------CCHHHHHHHHHHSCCCSSCEEECHHHH
T ss_pred -----------CCHHHHHHHHHhcCCCCCcccccHHHH
Confidence 46777777777776653 333555543
No 38
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=98.22 E-value=5.1e-06 Score=83.66 Aligned_cols=63 Identities=16% Similarity=0.260 Sum_probs=50.0
Q ss_pred hcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccHHHHHH
Q 010832 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLD 407 (499)
Q Consensus 335 ~~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~dll~ 407 (499)
.++++.+ ++|.||..|+..-..+++.+|+. .+...|. .+|.+.+|+|||||.||+|.|.|--+
T Consensus 168 ~~~~~~v--~~G~DQ~~~~~l~rdla~~~~~~------~p~~l~~--pll~~l~G~KMSKS~~n~I~l~d~p~ 230 (323)
T 2cyb_A 168 HLGVDLA--VGGIDQRKIHMLARENLPRLGYS------SPVCLHT--PILVGLDGQKMSSSKGNYISVRDPPE 230 (323)
T ss_dssp HTTCSEE--EEEGGGHHHHHHHHHHGGGGTCC------CCEEEEE--CCCBCTTSSBCCTTTTCSCBTTCCHH
T ss_pred hcCCCEE--EechhhHHHHHHHHHHHHhcCCC------CceEEec--CcccCCCCCcccCCcCceeCCCCCHH
Confidence 3577766 59999999999888888888874 3456676 45877899999999999999987433
No 39
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=98.19 E-value=3.6e-06 Score=86.98 Aligned_cols=61 Identities=13% Similarity=0.095 Sum_probs=40.1
Q ss_pred hcCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCC-CCccccccCCc-ccHHHH
Q 010832 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGED-GKRLRTRFSEV-VRLVDL 405 (499)
Q Consensus 335 ~~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~-g~KMSkR~G~~-v~l~dl 405 (499)
.++++.++ +|.||..|+.....+++.+|+. .+...|.+ +|.+.+ |+|||||.||. |.|.|=
T Consensus 180 ~~~~~~v~--~G~DQ~~~~~l~rdl~~r~~~~------~p~~l~~p--ll~gl~~G~KMSKS~~ns~I~L~D~ 242 (394)
T 2dlc_X 180 FLDVDCQF--GGVDQRKIFVLAEENLPSLGYK------KRAHLMNP--MVPGLAQGGKMSASDPNSKIDLLEE 242 (394)
T ss_dssp HTTCSEEE--EEGGGHHHHHHHHHHGGGGTCC------CCEEEEEC--CCCCCC----------CCSCBTTCC
T ss_pred hhCCCEEe--cCccHHHHHHHHHHHHHHcCCC------CCEEEecc--cccCCCCCCcCCCCCCCCEEeccCC
Confidence 36777664 8999999999888889999984 35667764 577778 99999999996 888753
No 40
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=98.00 E-value=8.1e-06 Score=83.70 Aligned_cols=59 Identities=17% Similarity=0.162 Sum_probs=40.7
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCC-cccHHH
Q 010832 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSE-VVRLVD 404 (499)
Q Consensus 336 ~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~-~v~l~d 404 (499)
++++.++ +|.||..|+.....+++.+|+. .+...|.+ +|.+.+|+|||||.|| .|.|.|
T Consensus 177 ~~a~~v~--~G~DQ~~~~~l~rdl~~r~~~~------~p~~l~~p--ll~gldG~KMSKS~~ns~I~L~d 236 (372)
T 1n3l_A 177 LKVDAQF--GGIDQRKIFTFAEKYLPALGYS------KRVHLMNP--MVPGLTGSKMSSSEEESKIDLLD 236 (372)
T ss_dssp TTCSEEE--EEGGGHHHHHHHHHHGGGGTCC------CCEEEEEC--CCCCSSCC-------CCSCBTTC
T ss_pred hcCCEEE--cChhHHHHHHHHHHHHHHcCCC------CCEEEecC--ccCCCCcccccCCCCCCeEeccC
Confidence 5677665 9999999999888888889874 34566764 5878899999999999 688865
No 41
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=97.54 E-value=0.00014 Score=74.36 Aligned_cols=60 Identities=15% Similarity=0.144 Sum_probs=45.3
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCC-----------------CCccccc-cC
Q 010832 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGED-----------------GKRLRTR-FS 397 (499)
Q Consensus 336 ~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~-----------------g~KMSkR-~G 397 (499)
++++.++ +|.||..|+.--..+++.+|+. .+...|.+ +|.+.+ |+||||| .|
T Consensus 176 ~~~~~v~--~G~DQ~~~~~l~rdla~r~~~~------~p~~l~~~--ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~~ 245 (364)
T 2cya_A 176 MDLDIAL--GGMDQRKAHMLARDVAEKLGRK------KPVAIHTP--IISSLQGPGRMEASQGEIDDVLAEVKMSKSKPE 245 (364)
T ss_dssp TTCSEEE--EEGGGHHHHHHHHHHHTTTTCC------CCEEEEEC--CCBCSSCC----------------CBCCSSSGG
T ss_pred cCCCEEe--ccchHHHHHHHHHHHHHHcCCC------Cceeeccc--eeeCCCcccccccccccccccccccccCCCCCC
Confidence 5777664 9999999999888888888873 24456664 476666 7899999 68
Q ss_pred CcccHHHH
Q 010832 398 EVVRLVDL 405 (499)
Q Consensus 398 ~~v~l~dl 405 (499)
+.|.|.|=
T Consensus 246 ~~I~L~d~ 253 (364)
T 2cya_A 246 TAVFVVDS 253 (364)
T ss_dssp GSCBTTCC
T ss_pred CEeeccCC
Confidence 88988753
No 42
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=97.53 E-value=0.00012 Score=74.18 Aligned_cols=65 Identities=23% Similarity=0.322 Sum_probs=44.5
Q ss_pred hcCCCeEEEEecCCccccHHHHHHHHHHcCCC-CCCCCCCCc--EEEEEeEEEecCCCCccccccCCcccHHH
Q 010832 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWL-SADDSTYPK--ASHVGFGLVLGEDGKRLRTRFSEVVRLVD 404 (499)
Q Consensus 335 ~~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~-~~~~~~~~~--~~Hv~~g~V~~~~g~KMSkR~G~~v~l~d 404 (499)
.++++.+ .+|.||..|+.--..+++.+++. ++..+ .+. +.|. -+|.+.+|.|||||.||.|.|.|
T Consensus 151 ~~~~~~v--pvG~DQ~~hi~l~rdia~r~n~~yg~~f~-~P~~~~~~~--~~l~gldG~KMSKS~~n~I~L~d 218 (340)
T 2g36_A 151 IYKAEGV--PVGEDQVYHIELTREIARRFNYLYDEVFP-EPEAILSRV--PKLPGTDGRKMSKSYGNIINLEI 218 (340)
T ss_dssp TTTCSEE--EECGGGHHHHHHHHHHHHHHHHHSCCCCC-CCEEEECCS--CCCCCTTSSCCCGGGTCCCBTTC
T ss_pred HhCCCEE--EcccchHHHHHHHHHHHHHhhhhcccccC-Cchhhhccc--cccCCCCccccCCCCCCeEeeeC
Confidence 3677766 49999999999877888776421 00000 122 2233 35777789999999999999877
No 43
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=97.30 E-value=0.00061 Score=68.15 Aligned_cols=59 Identities=12% Similarity=0.040 Sum_probs=40.5
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCC-CccccccCCcccHHHHHHH
Q 010832 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG-KRLRTRFSEVVRLVDLLDE 408 (499)
Q Consensus 336 ~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g-~KMSkR~G~~v~l~dll~e 408 (499)
++++.++ +|.||..|+.-...+ .-. .+...|.+ +|.+.+| +|||||.||.|.|.|=-++
T Consensus 162 ~~~~~v~--~G~DQ~~~~~l~R~i----~~~------~~~~~~~~--~l~~l~G~~KMSKS~~~~I~L~d~~~~ 221 (314)
T 2zp1_A 162 LGVDVAV--GGMEQRKIHMLAREL----LPK------KVVCIHNP--VLTGLDGEGKMSSSKGNFIAVDDSPEE 221 (314)
T ss_dssp HTCSEEE--EEGGGHHHHHHHHHH----SSS------CCEEEEEC--CCBCTTSSSBCCTTTTCSCBTTCCHHH
T ss_pred hCCCEEE--cChhHHHHHHHHHHh----cCC------CcEEeecc--ccccCCcccccCCCCcceecCCCCHHH
Confidence 4677665 899999888543333 211 24556664 5777789 7999999999998764444
No 44
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=97.22 E-value=0.0014 Score=72.05 Aligned_cols=60 Identities=13% Similarity=0.067 Sum_probs=44.4
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecC-CC-CccccccC-CcccHHH
Q 010832 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE-DG-KRLRTRFS-EVVRLVD 404 (499)
Q Consensus 336 ~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~-~g-~KMSkR~G-~~v~l~d 404 (499)
+++|.+ .+|.||..|+.--..++..+|+. ..+...|. .+|.+. +| +|||||.| +.|.|.|
T Consensus 182 ~~ad~v--pvG~DQ~~~l~l~Rdla~r~n~~-----~~p~~l~~--~~l~gL~dG~~KMSKS~~~~~I~L~D 244 (690)
T 3p0j_A 182 LKADIC--QLGLDQRKVNMLAREYCDLIGRK-----LKPVILSH--HMLAGLKQGQAKMSKSDPDSAIFMED 244 (690)
T ss_dssp TTCSEE--CCBGGGHHHHHHHHHHHHHTTCC-----CCCEEEEB--CCCCCSSTTCSSCBTTBGGGSCBTTC
T ss_pred hCCCEE--eccccHHHHHHHHHHHHHHhCCC-----CCceEeec--CeeecCCCCCcCCCCCCCCCeeeccC
Confidence 467754 48999999999888889999873 12344554 457666 78 49999998 6888764
No 45
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=96.76 E-value=0.0029 Score=64.65 Aligned_cols=60 Identities=18% Similarity=0.262 Sum_probs=42.0
Q ss_pred EEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCcccccc-CCcccHHH
Q 010832 341 IIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRF-SEVVRLVD 404 (499)
Q Consensus 341 ~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~-G~~v~l~d 404 (499)
.+--+|.||..|+.--..++..+|.... -..+...|.. ++.+.+|.|||||. ++.|.|.|
T Consensus 210 ~~VPVG~DQ~~hleltRdiA~rfn~~~~--~~~P~~~~~~--~~pgldG~KmS~S~~ns~I~l~D 270 (372)
T 3a04_A 210 VVVPVGADQDPHLRLTRDLADRMAGVVE--LERPASTYHK--LQPGLDGRKMSSSRPDSTIFLTD 270 (372)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHHTTTTSC--CCCCEEEEEC--CCBCTTSSBCCTTSGGGSCBTTC
T ss_pred eecccchhhHHHHHHHHHHHHHhcCccc--ccChhhhhhc--ccCCCCCCccCCCCCCcccccCC
Confidence 3446899999999988889988873210 1134455553 46778899999987 55677754
No 46
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=95.10 E-value=0.013 Score=59.41 Aligned_cols=59 Identities=12% Similarity=-0.037 Sum_probs=33.9
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccHHH
Q 010832 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 404 (499)
Q Consensus 336 ~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~d 404 (499)
++++.+ ++|.||..|+..-..+++.++.. .+...+. -++.+.+|+|||||.||.|.|.|
T Consensus 209 ~~~~i~--p~G~DQ~~~i~l~rdla~r~n~~------~~~~l~~--pll~~ldG~KMSKS~~naI~L~d 267 (356)
T 2pid_A 209 YGCRVQ--LGGSDQLGNIMSGYEFINKLTGE------DVFGITV--PLITSTTGAKLGKSAGNAVWLNR 267 (356)
T ss_dssp HCCCEE--EEEGGGHHHHHHHHHHHHHHSSC------CCEEEEE--CCCC-------------CCBSST
T ss_pred CCCcEE--eccHHHHHHHHHHHHHHHHhCCC------Ccccccc--ccccCCCcccccCCCCCeeeccC
Confidence 467655 49999999999888899998863 1233444 45777789999999999999876
No 47
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=94.79 E-value=0.013 Score=58.52 Aligned_cols=58 Identities=12% Similarity=0.016 Sum_probs=44.3
Q ss_pred CCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccHHH
Q 010832 337 KAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 404 (499)
Q Consensus 337 ~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~d 404 (499)
+++ +=++|.||..|+.--..+++.++.. + .... ..-++.+.+|+|||||.||.|.|.|
T Consensus 191 ~~~--v~~gG~DQ~~~i~l~rdla~r~n~~----~--~~~l--~~pll~gldG~KMSKS~~n~I~L~d 248 (322)
T 2yxn_A 191 GVV--LCIGGSDQWGNITSGIDLTRRLHQN----Q--VFGL--TVPLITKADGTKFGKTEGGAVWLDP 248 (322)
T ss_dssp CEE--EEEECTTCHHHHHHHHHHHHHHHCC----C--CEEE--ECCCCBCTTSCBTTEETTEECBSST
T ss_pred Cce--EEecCchhHHHHHHHHHHHHHhCCC----C--ceee--ccCccCCCCcccccCCCCCeeeccC
Confidence 444 5578999999999888888888763 1 2222 3345777789999999999999877
No 48
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=94.50 E-value=0.028 Score=58.39 Aligned_cols=59 Identities=14% Similarity=0.001 Sum_probs=45.7
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCCccccccCC-cccHHH
Q 010832 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSE-VVRLVD 404 (499)
Q Consensus 336 ~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~-~v~l~d 404 (499)
++++.. ++|.||..|+..-..+++.++.. .+...+. -++.+.+|+|||||.|| .|.|+|
T Consensus 186 ~~~~i~--~gG~DQ~~ni~lgrdlarr~~~~------~~~~l~~--plL~~ldG~KMSKS~~nsaI~L~d 245 (432)
T 2jan_A 186 HGCTLQ--IGGADQWGNIIAGVRLVRQKLGA------TVHALTV--PLVTAADGTKFGKSTGGGSLWLDP 245 (432)
T ss_dssp HCCCEE--EECSTTHHHHHHHHHHHHHHHCC------CCEEEEC--CCCBCTTSCBTTBCSSSCBCBSST
T ss_pred CCCcEE--eccHHHHHHHHHHHHHHHHhCCC------Ccccccc--ccccCCCcCcCCCCCCCCeEEccC
Confidence 477755 49999999999888888888763 1233343 45777899999999999 898876
No 49
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=93.97 E-value=0.039 Score=57.19 Aligned_cols=58 Identities=22% Similarity=0.154 Sum_probs=45.0
Q ss_pred CCCeEEEEecCCccccHHHHHHHHHHc-CCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccHHH
Q 010832 337 KAEWIIYVTDVGQQLHFDMVFSAAKRA-GWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 404 (499)
Q Consensus 337 ~~d~~i~V~g~~q~~hf~~~~~~~~~l-G~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~d 404 (499)
+++ +-++|.||..|+..-..+++.+ +.. .+...+. -++.+.+|+|||||.||.|.|+|
T Consensus 186 ~~~--i~~gG~DQ~~ni~~grdla~r~~~~~------~~~~l~~--pll~~ldG~KMSKS~~naI~L~d 244 (420)
T 1jil_A 186 NCK--IQVGGSDQWGNITSGIELMRRMYGQT------DAYGLTI--PLVTKSDGKKFGKSESGAVWLDA 244 (420)
T ss_dssp CEE--EEEEEGGGHHHHHHHHHHHHHHHCCC------CCEEEEE--CCCBCTTSCBTTBCSSSBCBSST
T ss_pred CCc--EEeccHHHHHHHHHHHHHHHHhcCCC------CeeEeec--ccccCCccccccCCCCCeEecCC
Confidence 544 4458999999999888888888 763 2334444 45777899999999999999887
No 50
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=93.95 E-value=0.044 Score=56.91 Aligned_cols=59 Identities=14% Similarity=0.221 Sum_probs=45.5
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCC-ccccccCCcccHHH
Q 010832 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK-RLRTRFSEVVRLVD 404 (499)
Q Consensus 336 ~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~-KMSkR~G~~v~l~d 404 (499)
++++.+ .+|.||..|+..-..+++.+|..+ +...|. -++.+.+|. |||||.||.|.|+|
T Consensus 186 l~~~l~--~gG~DQ~~ni~l~rdlarr~~~~~------~~~lt~--pll~gldG~~KMSKS~~n~I~L~d 245 (432)
T 1h3f_A 186 IRADVE--MGGTDQRFNLLVGREVQRAYGQSP------QVCFLM--PLLVGLDGREKMSKSLDNYIGLTE 245 (432)
T ss_dssp HTCSEE--EEEGGGHHHHHHHHHHHHHTTCCC------CEEEEE--CCCBCTTSSSBCCGGGTCCCBTTS
T ss_pred cCccEE--EechHHHHHHHHHHHHHHHhCCCC------ceEeec--ccccCCCCccccCcCCCCeeCCCC
Confidence 356655 499999999998888888988641 234444 457778896 99999999999886
No 51
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=93.86 E-value=0.035 Score=57.39 Aligned_cols=58 Identities=14% Similarity=0.109 Sum_probs=44.0
Q ss_pred CCCeEEEEecCCccccHHHHHHHHHHc-CCCCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccHHH
Q 010832 337 KAEWIIYVTDVGQQLHFDMVFSAAKRA-GWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 404 (499)
Q Consensus 337 ~~d~~i~V~g~~q~~hf~~~~~~~~~l-G~~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~d 404 (499)
+++ +-++|.||..|+..-..+++.+ +.. .+...+. -++.+.+|+|||||.||.|.|+|
T Consensus 185 ~~~--i~~gG~DQ~~ni~lgrdlarr~~~~~------~~~~lt~--pll~~ldG~KMSKS~~naI~L~d 243 (419)
T 2ts1_A 185 GCR--LQIGGSDQWGNITAGLELIRKTKGEA------RAFGLTI--PLVTKADGTKFGKTESGTIWLDK 243 (419)
T ss_dssp CEE--EEEEEGGGHHHHHHHHHHHHHHHC--------CCEEEEE--CCCCCTTSCCTTCCSSCCCBSST
T ss_pred CCc--EEeccHHHHHHHHHHHHHHHHhcCCC------Ceeeccc--ccccCCCcccccCCCCCeEecCC
Confidence 544 4458999999999888888888 752 1334444 45777899999999999999887
No 52
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=93.59 E-value=0.025 Score=56.91 Aligned_cols=61 Identities=23% Similarity=0.295 Sum_probs=43.9
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHc----C--CCCCCCCCCCcEEEEEe-EEEecCCC-CccccccCCcccHHH
Q 010832 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRA----G--WLSADDSTYPKASHVGF-GLVLGEDG-KRLRTRFSEVVRLVD 404 (499)
Q Consensus 336 ~~~d~~i~V~g~~q~~hf~~~~~~~~~l----G--~~~~~~~~~~~~~Hv~~-g~V~~~~g-~KMSkR~G~~v~l~d 404 (499)
++++.+ .+|.||..|+..-..+++.+ | +. .+...|... -+|.+.+| +|||||.||.|.|.|
T Consensus 140 ~~~~lv--p~G~DQ~~~i~l~rdla~r~n~~~g~~f~------~P~~~~~~~~p~l~gldG~~KMSKS~~n~I~L~d 208 (337)
T 2el7_A 140 YKADTV--PVGEDQVQHIELTREIARRFNHLFGETFP------EPQALLNPEAPRVPGIDGKAKMSKSLGNTIGLLE 208 (337)
T ss_dssp TTCCEE--ECCGGGCHHHHHHHHHHHHHHHHHSSCCC------CCEEECCTTSCCCBCTTSSSBCCTTTTCCCBSSS
T ss_pred hCCcEE--EcccchHHHHHHHHHHHHHHHhhcCcccC------CCeeecccccccccCCCCccccCCCCCCeeeCcC
Confidence 577766 49999999999777777655 4 21 234444311 25777789 899999999998875
No 53
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=93.23 E-value=0.066 Score=56.33 Aligned_cols=56 Identities=20% Similarity=0.267 Sum_probs=43.1
Q ss_pred ecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCC--CccccccCC-cccHHHHHHH
Q 010832 345 TDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRFSE-VVRLVDLLDE 408 (499)
Q Consensus 345 ~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g--~KMSkR~G~-~v~l~dll~e 408 (499)
+|.||..|+.--..+++.+|+. .+...|.+ +|.+.+| .|||||.|| .|.|.|=-++
T Consensus 309 vG~DQ~~~i~l~Rdla~r~~~~------~p~~l~~p--ll~gLdG~~~KMSKS~~nsaI~L~d~p~~ 367 (477)
T 1r6t_A 309 CAIDQDPYFRMTRDVAPRIGYP------KPALLHST--FFPALQGAQTKMSASDPNSSIFLTDTAKQ 367 (477)
T ss_dssp EEGGGHHHHHHHHHHGGGGTCC------CCEEEEEC--CCEETTEEEEECCTTSTTCCCBTTCCHHH
T ss_pred ccccHHHHHHHHHHHHHHhCCC------Cceeeecc--cccCCCCCccccCCCCCCCceeecCCHHH
Confidence 7999999998888888899873 23445654 5777888 799999999 8988753333
No 54
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=93.10 E-value=0.022 Score=56.89 Aligned_cols=66 Identities=14% Similarity=0.210 Sum_probs=44.2
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcCCC-CCCCCCCCcEEEE-EeEEEecCCCCccccccCCcccHHH
Q 010832 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWL-SADDSTYPKASHV-GFGLVLGEDGKRLRTRFSEVVRLVD 404 (499)
Q Consensus 336 ~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~-~~~~~~~~~~~Hv-~~g~V~~~~g~KMSkR~G~~v~l~d 404 (499)
++++.+. +|.||..|+.--..+++.++.. ++..+ .+.-.|. ..-+|.+.+|+|||||.||.|.|.|
T Consensus 138 ~~~~~vp--vG~DQ~~hi~l~Rdia~r~n~~~g~~f~-~P~~~~~~~~~~l~~l~G~KMSKS~~n~I~L~d 205 (322)
T 3tzl_A 138 FDTRIVP--VGKDQIQHVEIARDIALKVNNEWGEIFT-LPEARVNEEVAVVVGTDGAKMSKSYQNTIDIFS 205 (322)
T ss_dssp TTCSEEE--CCGGGHHHHHHHHHHHHHHHHHHCSCSC-CCEEECCCSSCCCBCTTSSBCCGGGTCCCBSSC
T ss_pred hCCcEEE--eccchHHHHHHHHHHHHHhcccccCCCC-CchhhhccccccccCCCCCcCCCCCCCceecCC
Confidence 5777664 9999999999777778776530 00000 1233331 1235777789999999999998875
No 55
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=93.08 E-value=0.048 Score=56.65 Aligned_cols=54 Identities=13% Similarity=0.187 Sum_probs=37.3
Q ss_pred EEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCC--CccccccCC-cccHHH
Q 010832 343 YVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRFSE-VVRLVD 404 (499)
Q Consensus 343 ~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g--~KMSkR~G~-~v~l~d 404 (499)
-.+|.||..|+.--..+++.+|+. .+...|. -+|.+.+| +|||||.|| .|.|.|
T Consensus 253 vp~G~DQ~~~i~l~Rdla~r~~~~------~p~~l~~--~ll~gLdG~~~KMSKS~~nsaI~L~d 309 (432)
T 2ip1_A 253 IPCAIDQDPYFRVCRDVADKLKYS------KPALLHS--RFFPALQGSTTKMSASDDTTAIFMTD 309 (432)
T ss_dssp EEEEGGGHHHHHHHHHHHHHHTSC------CCEEEEE--CCCCCTTC--------CGGGCCBTTC
T ss_pred EEeccCcHHHHHHHHHHHHHhCCC------Cceeecc--ccccCCCCCccccCCCCCCCeEeccC
Confidence 359999999999888889999974 2344555 45777888 899999999 898876
No 56
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=92.57 E-value=0.038 Score=56.69 Aligned_cols=54 Identities=24% Similarity=0.350 Sum_probs=32.8
Q ss_pred EEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCC--CccccccCCcccHHH
Q 010832 343 YVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRFSEVVRLVD 404 (499)
Q Consensus 343 ~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g--~KMSkR~G~~v~l~d 404 (499)
-.+|.||..|+.--..++..+|+. .+...|.+ +|.+-+| .|||||.|+.|.|.|
T Consensus 228 vp~G~DQ~~~i~l~Rdla~r~~~~------~p~~l~~~--~l~gLdG~~~KMSKS~~~~I~L~D 283 (395)
T 3i05_A 228 IPQAIDQDPYFRLTRDIAPRLGYL------KPAVIHSK--FFPGLSGPKGKMSSSSGTAVLLTD 283 (395)
T ss_dssp EEEEGGGHHHHHHHHHTHHHHTCC------CCEEEEEC--CCCCC-------------CCBTTC
T ss_pred EEeccchHHHHHHHHHHHHHcCCC------Cceeeccc--cccCCCCCcccCCCCCCCcccCCC
Confidence 468999999999888889999984 23455654 4777788 699999999998875
No 57
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=92.49 E-value=0.032 Score=58.03 Aligned_cols=53 Identities=21% Similarity=0.276 Sum_probs=41.7
Q ss_pred ecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCC--CccccccCC-cccHHHH
Q 010832 345 TDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRFSE-VVRLVDL 405 (499)
Q Consensus 345 ~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g--~KMSkR~G~-~v~l~dl 405 (499)
+|.||..|+.--..+++.+|+. .+...|.+ +|.+.+| +|||||.|| .|.|.|=
T Consensus 262 vG~DQ~~~i~l~Rdla~r~~~~------~P~~l~~p--ll~gLdG~~~KMSKS~~nsaI~L~D~ 317 (437)
T 1r6u_A 262 CAIDQDPYFRMTRDVAPRIGYP------KPALLHST--FFPALQGAQTKMSASDPNSSIFLTDT 317 (437)
T ss_dssp EEGGGHHHHHHHHHHGGGGTCC------CCEEEEEC--CCEETTEEEEECCTTSSSSCCBTTCC
T ss_pred eehhhHHHHHHHHHHHHHhCCC------CceEeecc--cccCCCCCccccCCCCCCCeeeccCC
Confidence 7999999998888888889873 23445554 5777788 799999999 7988753
No 58
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=92.32 E-value=0.046 Score=55.28 Aligned_cols=67 Identities=16% Similarity=0.128 Sum_probs=42.7
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcCCC-CCCCCCCCcEEEEEeEEEecCCCC-ccccccCCcccHHHH
Q 010832 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWL-SADDSTYPKASHVGFGLVLGEDGK-RLRTRFSEVVRLVDL 405 (499)
Q Consensus 336 ~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~-~~~~~~~~~~~Hv~~g~V~~~~g~-KMSkR~G~~v~l~dl 405 (499)
++++.++ +|.||..|+.--..+++.++.. ++..+ .+...+...-+|.+.+|. |||||.||.|.|.|=
T Consensus 161 ~~~~~vp--vG~DQ~~hi~l~rdia~r~n~~yg~~f~-~P~~~~~~~~~l~~ldG~~KMSKS~~n~I~L~d~ 229 (351)
T 1yi8_B 161 FGATLVP--VGDDQLPMLEQTREIVRRFNALYAPVLA-EPQAQLSRVPRLPGLDGQAKMSKSLGNAIALGDS 229 (351)
T ss_dssp HTCSEEE--ECGGGHHHHHHHHHHHHHHHHHTCSCSC-CCEEEECSSCSCCCTTSSSCCCTTTTCCCBTTCC
T ss_pred cCCCEEE--ecCCcHHHHHHHHHHHHHHHhhcccccC-CCeeeeecCccccCCCCccccCCCCCCeecCCCC
Confidence 5677664 9999999999777777665310 00001 122222112356667886 999999999988753
No 59
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=92.30 E-value=0.036 Score=56.87 Aligned_cols=57 Identities=21% Similarity=0.300 Sum_probs=33.3
Q ss_pred EecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCC--CccccccCC-cccHHHHHHH
Q 010832 344 VTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRFSE-VVRLVDLLDE 408 (499)
Q Consensus 344 V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g--~KMSkR~G~-~v~l~dll~e 408 (499)
.+|.||..|+..-..+++.+|+. .+...|.+ +|.+.+| .|||||.|| .|.|.|=-++
T Consensus 225 p~G~DQ~~~i~l~Rdla~r~~~~------~p~~l~~~--~l~gLdG~~~KMSKS~~nsaI~L~D~p~~ 284 (393)
T 3hv0_A 225 PHAIDQDPYFRMVRDVAPRLGYL------KPSSIHSI--FLPSLQGSQTKMSASVQNSSIFVNDNEES 284 (393)
T ss_dssp EEEGGGHHHHHHHHHHTGGGTCC------CCEEEEEC--CCCC-------------CCCCBTTCCHHH
T ss_pred ccccchHHHHHHHHHHHHHcCCC------CceeeccC--cccCCCCCCcCCCCCCCCCeEeccCCHHH
Confidence 68999999999888888889874 23455654 4777788 799999987 8888653333
No 60
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=92.22 E-value=0.085 Score=53.74 Aligned_cols=60 Identities=10% Similarity=0.069 Sum_probs=44.5
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecC-CCC-cccccc-CCcccHHH
Q 010832 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE-DGK-RLRTRF-SEVVRLVD 404 (499)
Q Consensus 336 ~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~-~g~-KMSkR~-G~~v~l~d 404 (499)
+++|.+ .+|.||..|+.--..++..+|+. ..+.+.|.+ +|.+- +|. |||||. |+.|.|.|
T Consensus 199 l~ad~v--pgG~DQ~~~l~l~Rdla~r~~~~-----~~~~~l~~p--~l~gL~dG~~KMSKS~~~~~I~L~D 261 (373)
T 3vgj_A 199 LNVDIC--QLGIDQRKVNMLAREYCDIKKIK-----KKPVILSHG--MLPGLLEGQEKMSKSDENSAIFMDD 261 (373)
T ss_dssp TTCSEE--CCBGGGHHHHHHHHHHHHHHTCS-----CCCEEEEBC--CCCCSSTTCCSCCSSSTTCCCBTTC
T ss_pred cCCcEE--EcchhhHHHHHHHHHHHHHhCCC-----CCceEEeCC--eeecCCCCCCCCcCCCCCCeeecCC
Confidence 567755 58999999999888889999873 123445554 57664 784 999999 57888865
No 61
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=92.18 E-value=0.061 Score=55.33 Aligned_cols=55 Identities=22% Similarity=0.250 Sum_probs=42.5
Q ss_pred EEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCC--Ccccccc-CCcccHHH
Q 010832 342 IYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRF-SEVVRLVD 404 (499)
Q Consensus 342 i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g--~KMSkR~-G~~v~l~d 404 (499)
+-.+|.||..|+.--..++..+|+. .+...|.+ +|.+.+| +|||||. |+.|.|.|
T Consensus 246 lvpvG~DQ~~~i~l~Rdla~r~~~~------~p~~l~~~--~l~gLdG~~~KMSKS~~~~~I~L~D 303 (406)
T 3tze_A 246 LVPAAVDQDPFFRLARDKAKALGEK------KPSSIYVS--LLPDLKGVNRKMSASDPNSSIYLDD 303 (406)
T ss_dssp EEEEEGGGHHHHHHHHHHHHHHTCC------CCEEEEEC--CCCCTTSCCCCSSCSCGGGSCBTTC
T ss_pred EEeeccchHHHHHHHHHHHHHcCCC------CceeeccC--cccCCCCCCcCCCCCCCCCcccCCC
Confidence 3358999999999888889999974 23445654 4777788 6999998 68898865
No 62
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=91.94 E-value=0.049 Score=55.83 Aligned_cols=57 Identities=16% Similarity=0.193 Sum_probs=43.0
Q ss_pred EecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCC--CccccccCC-cccHHHHHHH
Q 010832 344 VTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDG--KRLRTRFSE-VVRLVDLLDE 408 (499)
Q Consensus 344 V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g--~KMSkR~G~-~v~l~dll~e 408 (499)
.+|.||..|+.--..++..+|+. .+...|. .+|.+-+| +|||||.+| .|.|.|=-++
T Consensus 212 pvG~DQ~~hl~l~Rdla~r~n~~------~p~~l~~--~~l~gLdG~~~KMSKS~~ns~I~L~D~p~~ 271 (392)
T 3jxe_A 212 PAAIDQDPYWRLQRDFAESLGYY------KTAALHS--KFVPSLTSLSGKMSASKPETAIYLTDSPED 271 (392)
T ss_dssp EEEGGGHHHHHHHHHHTGGGTSC------CCEEEEE--CCCCCSSCSSSCCCTTSGGGCCBTTCCHHH
T ss_pred ecccchHHHHHHHHHHHHHcCCC------CCeeeec--ccccCCCCCccccccCCCCCeeeCCCCHHH
Confidence 79999999999888888899873 2445555 35776777 599999998 8887653333
No 63
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=91.25 E-value=0.088 Score=53.11 Aligned_cols=62 Identities=11% Similarity=0.069 Sum_probs=44.8
Q ss_pred CCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecC-CC-Ccccccc-CCcccHHHHHHH
Q 010832 337 KAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGE-DG-KRLRTRF-SEVVRLVDLLDE 408 (499)
Q Consensus 337 ~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~-~g-~KMSkR~-G~~v~l~dll~e 408 (499)
+++.+ .+|.||..|+.--..+++.+|+. .+...|. .+|.+- +| +|||||. |+.|.|.|=-++
T Consensus 186 ~~~~~--~~G~DQ~~~i~l~Rdia~r~~~~------~p~~~~~--~~l~gL~dg~~KMSKS~~~~~I~L~d~p~~ 250 (348)
T 2j5b_A 186 GIDIC--QLGIDQRKVNMLAIEYANDRGLK------IPISLSH--HMLMSLSGPKKKMSKSDPQGAIFMDDTEQE 250 (348)
T ss_dssp CCSEE--CCBGGGHHHHHHHHHHHHHTTCC------CCEEEEB--CCCCCTTCSSCCCSTTCGGGSCBTTCCHHH
T ss_pred CCcEE--EeccChHHHHHHHHHHHHHhCCC------CceeecC--ccccCCCCcccccccCCCCCeEeecCCHHH
Confidence 66654 48999999998888889999874 1344554 456655 56 6999998 588988754333
No 64
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=91.22 E-value=0.084 Score=54.11 Aligned_cols=65 Identities=11% Similarity=-0.011 Sum_probs=42.2
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcCC-----------CCCCCCCCCcEEEEEeEEEecCCCCccccccCCcccHHH
Q 010832 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGW-----------LSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVD 404 (499)
Q Consensus 336 ~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~-----------~~~~~~~~~~~~Hv~~g~V~~~~g~KMSkR~G~~v~l~d 404 (499)
++++. =++|.||..|...-..+++.++. .|...-..+...+. -+|.+.+|+|||||.||.|.|+|
T Consensus 231 ~~~~i--~~gG~DQ~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~~~~~~~l~~--pll~~ldG~KMSKS~~naI~L~d 306 (392)
T 1y42_X 231 QGVQM--QIGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKTALDECVGFTV--PLLTDSSGAKFGKSAGNAIWLDP 306 (392)
T ss_dssp HCEEE--EEECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSGGGSCEEEEC--CCCBCTTCCBTTBCSSSBCBSST
T ss_pred CCccE--EecCcchHhHHHHHHHHHHHHhhhccccccccccccccccCCcccccc--ccCcCCchhhccCCCCCeeeccC
Confidence 35543 35899999999977777655421 11000012233344 45778899999999999999876
No 65
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=91.18 E-value=0.14 Score=52.25 Aligned_cols=52 Identities=12% Similarity=0.120 Sum_probs=41.0
Q ss_pred ecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCC-ccccc-cCCcccHHH
Q 010832 345 TDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK-RLRTR-FSEVVRLVD 404 (499)
Q Consensus 345 ~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~-KMSkR-~G~~v~l~d 404 (499)
+|.||..|+.--..+++.+|+. .+...|. -+|.+-+|. ||||| .|+.|.|.|
T Consensus 230 vG~DQ~~hl~l~Rdla~r~n~~------~p~~l~~--~~l~gLdG~~KMSKSd~~~~I~L~D 283 (386)
T 3hzr_A 230 DSIKNVQFHSIIDQIATTLNFI------QPTVLFH--KMVPLLSGVTKFDIPSDHNSILLSD 283 (386)
T ss_dssp EEGGGHHHHHHHHHHHHHHTCC------CCEEEEE--CCCCCTTCTTCCCCCCTTTSCBTTC
T ss_pred cccchHHHHHHHHHHHHHcCCC------CceEeec--CeeeCCCCCCccCcCCCCCeeecCC
Confidence 5999999999888899999984 2344455 347777885 99999 799998865
No 66
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=91.06 E-value=0.057 Score=54.52 Aligned_cols=68 Identities=13% Similarity=0.098 Sum_probs=43.5
Q ss_pred hcCCCeEEEEecCCccccHHHHHHHHHHcCCC-CCCCCCCCcEEEEE-eEEEecCCC--CccccccCC---cccHHHH
Q 010832 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWL-SADDSTYPKASHVG-FGLVLGEDG--KRLRTRFSE---VVRLVDL 405 (499)
Q Consensus 335 ~~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~-~~~~~~~~~~~Hv~-~g~V~~~~g--~KMSkR~G~---~v~l~dl 405 (499)
.+++|.++ +|.||..|+.--..+++.++.. ++. -..+...|.. ..+|.+.+| +|||||.|| .|.|.|=
T Consensus 145 ~~~a~~vp--vG~DQ~~~lel~Rdia~r~n~~yg~~-f~~P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D~ 219 (348)
T 2yy5_A 145 LYQPDIVP--VGNDQKQHLELTRDLAQRIQKKFKLK-LRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDP 219 (348)
T ss_dssp TTCCSEEE--CCGGGHHHHHHHHHHHHHHHHHHCCC-CCCCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTCC
T ss_pred HhCccEEE--ecccHHHHHHHHHHHHHHhhhhcccc-cCCCeeecccccccccCCCCcchhcCCCCCCCCceEeecCC
Confidence 46777665 9999999999887888777410 000 0023333321 124555567 899999999 7888763
No 67
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=89.86 E-value=0.15 Score=51.08 Aligned_cols=71 Identities=13% Similarity=0.048 Sum_probs=44.0
Q ss_pred hcCCCeEEEEecCCccccHHHHHHHHHHcCCC-CCCCCCCCcEEEE-EeEEEecCCC--CccccccCC-c--ccHHHHHH
Q 010832 335 EEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWL-SADDSTYPKASHV-GFGLVLGEDG--KRLRTRFSE-V--VRLVDLLD 407 (499)
Q Consensus 335 ~~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~-~~~~~~~~~~~Hv-~~g~V~~~~g--~KMSkR~G~-~--v~l~dll~ 407 (499)
.++++.++ +|.||..|+.--..+++.+|.. ++..+ .+...+. ..-+|.+.+| +|||||.|| . |.|.|=-+
T Consensus 135 ~~~~~~vp--vG~DQ~~~iel~Rdia~r~n~~yg~~f~-~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d~~~ 211 (328)
T 1i6k_A 135 LYNTDIVP--VGEDQKQHIELTRDLAERFNKRYGELFT-IPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAK 211 (328)
T ss_dssp TTTCSEEE--CCGGGHHHHHHHHHHHHHHHHHHCSCCC-CCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTCCHH
T ss_pred HhCCCEEe--cccchHHHHHHHHHHHHHhCcccccccC-CCeeeeccccccccCCCCCccCCCCCCCCcCceeeecCCHH
Confidence 36777664 9999999999887888777620 00000 1222221 0124556677 899999999 6 88765433
Q ss_pred H
Q 010832 408 E 408 (499)
Q Consensus 408 e 408 (499)
+
T Consensus 212 ~ 212 (328)
T 1i6k_A 212 T 212 (328)
T ss_dssp H
T ss_pred H
Confidence 3
No 68
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=89.59 E-value=0.095 Score=54.54 Aligned_cols=53 Identities=17% Similarity=0.188 Sum_probs=40.1
Q ss_pred EecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEecCCCC--ccccccCC-cccHHH
Q 010832 344 VTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGK--RLRTRFSE-VVRLVD 404 (499)
Q Consensus 344 V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~~g~--KMSkR~G~-~v~l~d 404 (499)
-+|.||..|+..-..++..+|+. .+.+.|.+ +|.+-+|. |||||.+| .|.|.|
T Consensus 292 PvG~DQ~~hlel~Rdia~rfn~~------~p~~~~~~--~l~gLdG~~~KMSKS~~ns~I~l~D 347 (451)
T 3foc_A 292 ASGIEQDPYFRLARDLAPRMGHP------KNAYLLGK--FLPGLQGSGTKMSASDPNSAIYLTD 347 (451)
T ss_dssp EECTTTHHHHHHHHHHTTTTTSC------CCEEEEEC--CCCBTTBTTCCCCTTCGGGSCBTTC
T ss_pred eeecchHHHHHHHHHHHHHhCCC------CCeeecCC--cccCCCCCCCccCCCCCCCeeeecC
Confidence 57999999998888888888873 23455654 46666774 99999997 687754
No 69
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=85.24 E-value=0.33 Score=49.44 Aligned_cols=64 Identities=16% Similarity=0.159 Sum_probs=44.7
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcCCC-----CCCCCCCCcEEEEEeEEEecCCC------------------Ccc
Q 010832 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWL-----SADDSTYPKASHVGFGLVLGEDG------------------KRL 392 (499)
Q Consensus 336 ~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~-----~~~~~~~~~~~Hv~~g~V~~~~g------------------~KM 392 (499)
+++|.+. +|.||..|+.--..+++.+|+. ++ .+.+...|. .+|.+.+| +||
T Consensus 179 ~~~~~vp--~G~DQ~~~i~l~rdla~r~n~~~~~~~g~--~~~~~~~~~--~~l~gL~g~~~~~~~~~~~~~~~~~~~KM 252 (375)
T 2cyc_A 179 QGVTIAH--AGMDQRKAHVIAIEVAQKLRYHPIVHEGE--KLKPVAVHH--HLLLGLQEPPKWPIESEEEFKEIKAQMKM 252 (375)
T ss_dssp TTCSEEE--EEGGGHHHHHHHHHHGGGCSSSCEEETTE--EECCEEEEE--CCCBCSSCCSSSSCCSHHHHHHHHHHHBG
T ss_pred hCCCeec--ccchHHHHHHHHHHHHHHhCCcccccccc--cCccEEecc--ccccCCCCcccccccchhhhhhhhhhhcc
Confidence 5677664 9999999999888888888761 00 002334454 45777777 799
Q ss_pred cccc-CCcccHHHH
Q 010832 393 RTRF-SEVVRLVDL 405 (499)
Q Consensus 393 SkR~-G~~v~l~dl 405 (499)
|||. |+.|.|.|=
T Consensus 253 SKS~~~~~I~L~d~ 266 (375)
T 2cyc_A 253 SKSKPYSAVFIHDS 266 (375)
T ss_dssp GGSCGGGSCBTTCC
T ss_pred cCCCCCCeeccCCC
Confidence 9998 788888653
No 70
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=84.69 E-value=0.28 Score=49.20 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=28.0
Q ss_pred ecCCCCCCCCccchhhHhHHHHHHHHHHHHCC-CeEEEEeccCCc
Q 010832 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSN-VEVLRRNHVGDW 177 (499)
Q Consensus 134 ~~SpNp~~plHiGH~R~~iiGD~larll~~~G-~~V~~~~yi~D~ 177 (499)
||+--|||+|||||...++ --+.+ |...| |+| ...|+||
T Consensus 5 y~G~~PTg~lHlGh~~g~l--~~~~~-lQ~~G~~~~--~~~IaD~ 44 (337)
T 2el7_A 5 LSGIQPSGEIHIGNYLGAI--KQWVA-IGEKLGRDA--FFCIVDY 44 (337)
T ss_dssp EEEECSCSCCBHHHHHTHH--HHHHH-HHHHHGGGE--EEEECGG
T ss_pred EEeeCCCCcccHHHHHHHH--HHHHH-HHhcCCCCE--EEEEeCc
Confidence 7888999999999998764 12222 35568 887 5567775
No 71
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=81.79 E-value=0.92 Score=46.25 Aligned_cols=45 Identities=22% Similarity=0.182 Sum_probs=31.5
Q ss_pred CceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHH-CCCeEEEEeccCCcc
Q 010832 127 VKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEF-SNVEVLRRNHVGDWG 178 (499)
Q Consensus 127 ~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~-~G~~V~~~~yi~D~G 178 (499)
++++.| |++--|||+|||||.-.+. +.|.|.. .|..|... |+|+.
T Consensus 80 ~~~~~v-ysG~~PTG~lHLGh~v~~~----~~~~lQ~~~g~~v~i~--I~D~~ 125 (386)
T 3hzr_A 80 KKPTFI-FIQKYPQKEVALEEYITLE----FARYLQDAFNIQVIIQ--ILDDI 125 (386)
T ss_dssp TCCEEE-EEEECCCSSCBGGGHHHHH----HHHHHHHHHCCEEEEE--ECHHH
T ss_pred CCCeEE-EeccCCCCCccHHHHHHHH----HHHHHHHhcCCeEEEE--eCchH
Confidence 344556 8999999999999975442 2344554 58887776 88864
No 72
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=77.63 E-value=0.74 Score=45.89 Aligned_cols=38 Identities=13% Similarity=0.176 Sum_probs=27.5
Q ss_pred ecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCc
Q 010832 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (499)
Q Consensus 134 ~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~ 177 (499)
||+--|||.|||||...++. -+.+ |.. ||++ ...|+||
T Consensus 5 ysG~~PTG~lHlGn~vg~l~--~~~~-lQ~-g~~~--~~~IaD~ 42 (328)
T 1i6k_A 5 FSGIQPSGVITIGNYIGALR--QFVE-LQH-EYNC--YFCIVDQ 42 (328)
T ss_dssp EEEECCCSCCBHHHHHHTHH--HHHH-HTT-TSEE--EEEECHH
T ss_pred EEeeCCCCcccHHHHHHHHH--HHHH-HHc-CCcE--EEEEeCc
Confidence 78889999999999987762 2222 343 9986 5667774
No 73
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=76.83 E-value=0.54 Score=47.94 Aligned_cols=63 Identities=14% Similarity=0.099 Sum_probs=39.5
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEe-----EEEecC-CC-Ccccccc---CCcccHHH
Q 010832 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGF-----GLVLGE-DG-KRLRTRF---SEVVRLVD 404 (499)
Q Consensus 336 ~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~~~~~~~~~~~~Hv~~-----g~V~~~-~g-~KMSkR~---G~~v~l~d 404 (499)
+++|.+ .+|.||..|+..-..++..+|.... ..+. .+-++ .+|.+- +| +|||||. ||.|.|.|
T Consensus 170 ~~ad~v--PvG~DQ~~hleltRdia~rfn~~y~-~~f~---~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~D 242 (388)
T 3prh_A 170 YGTDLV--PPGEDQKQHLELTRNLAERFNKKYN-DIFT---IPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLD 242 (388)
T ss_dssp TTCCEE--CCCSSCHHHHHHHHHHHHHHHHHTC-SCCC---CCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTTC
T ss_pred hCCCEE--EechhHHHHHHHHHHHHHHhCcccC-CCcc---cchhhhcccccccccCCCCCCccCCCCCCCCCeeecCC
Confidence 567765 4999999999988888887774200 0111 11100 122222 44 6999999 89998865
No 74
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=75.55 E-value=0.6 Score=46.90 Aligned_cols=65 Identities=17% Similarity=0.164 Sum_probs=38.9
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcCCC-CCCCCCC-Cc-EEEEEeEEEecC-CC-CccccccC---CcccHHH
Q 010832 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWL-SADDSTY-PK-ASHVGFGLVLGE-DG-KRLRTRFS---EVVRLVD 404 (499)
Q Consensus 336 ~~~d~~i~V~g~~q~~hf~~~~~~~~~lG~~-~~~~~~~-~~-~~Hv~~g~V~~~-~g-~KMSkR~G---~~v~l~d 404 (499)
+++|.+ .+|.||..|+.--..++..+|.. ++ .+. +. +.+-...+|.+- +| +|||||.+ +.|.|.|
T Consensus 151 ~~ad~v--pvG~DQ~~hleltRdia~rfn~~yg~--~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D 223 (346)
T 3n9i_A 151 YQTNQV--PVGEDQKQHLELSRDIASRFNNLYGD--IFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLE 223 (346)
T ss_dssp TTCSEE--CCCGGGHHHHHHHHHHHHHHHHHHSS--CSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTS
T ss_pred hCceEE--EeccchHHHHHHHHHHHHHhccccCC--cccccchhccCCcccCccCCCCccccCCCCCCCCceecCCC
Confidence 567765 49999999999888888877621 00 110 11 111000123333 66 59999997 6888765
No 75
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=75.04 E-value=1.9 Score=43.63 Aligned_cols=39 Identities=13% Similarity=0.374 Sum_probs=26.2
Q ss_pred ecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCc
Q 010832 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (499)
Q Consensus 134 ~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~ 177 (499)
|++--|||.||+|| .++--...+-|...|++|+. .|.||
T Consensus 60 y~G~~PTg~lHlG~---gvl~~~~~~~lQ~~G~~~~~--lIaD~ 98 (373)
T 3vgj_A 60 YDGFEPSGRMHIAQ---GLLKSIIVNKLTSNGCTFIF--WIADW 98 (373)
T ss_dssp EEEECCCSSCBHHH---HHHHHHHHHHHHTTTCEEEE--EECHH
T ss_pred EeCCCCCCCceehh---hHHHHHHHHHHHHCCCcEEE--EEecc
Confidence 89999999999999 23332223344567987654 55665
No 76
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=73.91 E-value=0.51 Score=47.33 Aligned_cols=71 Identities=15% Similarity=0.135 Sum_probs=40.6
Q ss_pred cCCCeEEEEecCCccccHHHHHHHHHHcC--CCCCCCCCC-C-cEEEEEeEEEecC-CC-Ccccccc---CCcccHHHHH
Q 010832 336 EKAEWIIYVTDVGQQLHFDMVFSAAKRAG--WLSADDSTY-P-KASHVGFGLVLGE-DG-KRLRTRF---SEVVRLVDLL 406 (499)
Q Consensus 336 ~~~d~~i~V~g~~q~~hf~~~~~~~~~lG--~~~~~~~~~-~-~~~Hv~~g~V~~~-~g-~KMSkR~---G~~v~l~dll 406 (499)
+++|.+ .+|.||..|+.--..++..+| |..+...+. + .+.+-...+|.+- +| +|||||. ||.|.|.|=-
T Consensus 142 ~~ad~v--pvG~DQ~~hlel~Rdia~rfn~~yg~~~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p 219 (341)
T 3sz3_A 142 YGAHQV--PVGSDQKQHLELARDIATRFNNIYSPEQPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLEDP 219 (341)
T ss_dssp TTCSEE--CCCGGGHHHHHHHHHHHHHHHHHHCSSSCSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTTCCH
T ss_pred cCCCEE--EeccchHHHHHHHHHHHHHhchhccCCCcccccChhhhccCcccccCCCCCCCccCCCCCCCCCeeecCCCH
Confidence 567755 499999999988778887776 210000110 1 1111001223333 56 6999999 7899886533
Q ss_pred HH
Q 010832 407 DE 408 (499)
Q Consensus 407 ~e 408 (499)
++
T Consensus 220 ~~ 221 (341)
T 3sz3_A 220 KS 221 (341)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 77
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=73.55 E-value=1.9 Score=42.81 Aligned_cols=38 Identities=16% Similarity=0.319 Sum_probs=26.9
Q ss_pred ecCCCCCCC-CccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCc
Q 010832 134 FSSPNIAKE-MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (499)
Q Consensus 134 ~~SpNp~~p-lHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~ 177 (499)
||+--|||+ |||||.- ++. . .+-|...||+++ ..|+||
T Consensus 37 y~G~~PTg~slHlGh~l-~l~--~-~~~lQ~~g~~~~--~~i~D~ 75 (322)
T 2yxn_A 37 VCGFDPTADSLHLGHLV-PLL--C-LKRFQQAGHKPV--ALVGGA 75 (322)
T ss_dssp EEEECCSSSSCBHHHHH-HHH--H-HHHHHHTTCEEE--EEECTT
T ss_pred EEeecCCCCcccHHHHH-HHH--H-HHHHHHcCCcEE--EEEccc
Confidence 899999999 9999965 222 2 334556799864 456665
No 78
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=72.99 E-value=2.4 Score=43.62 Aligned_cols=41 Identities=22% Similarity=0.462 Sum_probs=27.9
Q ss_pred EEEEecCCCCCCC-CccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCc
Q 010832 130 AVVDFSSPNIAKE-MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (499)
Q Consensus 130 v~Ve~~SpNp~~p-lHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~ 177 (499)
+.| ||+--|||+ |||||+- .+. .+ +-|...||+++. .|+|+
T Consensus 31 ~~i-y~G~dPTg~sLHlGh~v-~l~--~l-~~lQ~~G~~~i~--lIgd~ 72 (419)
T 2ts1_A 31 VTL-YCGFDPTADSLHIGHLA-TIL--TM-RRFQQAGHRPIA--LVGGA 72 (419)
T ss_dssp CEE-EEEECCSSSSCBGGGHH-HHH--HH-HHHHHTTCEEEE--EECTT
T ss_pred CEE-EEeeCCCCCCccHHHHH-HHH--HH-HHHHHCCCcEEE--EEcCc
Confidence 344 899999999 9999965 222 23 445567998755 44554
No 79
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=72.62 E-value=2.4 Score=42.66 Aligned_cols=43 Identities=23% Similarity=0.382 Sum_probs=28.2
Q ss_pred ceEEEEecCCCCCCC-CccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCc
Q 010832 128 KKAVVDFSSPNIAKE-MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (499)
Q Consensus 128 ~~v~Ve~~SpNp~~p-lHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~ 177 (499)
++..| ||+--|||+ |||||+- ++. .+ +-|...||+|+. .|+|+
T Consensus 45 ~~~~v-y~G~~PTg~sLHLGhl~-~l~--~~-~~lQ~~G~~~~~--lIaD~ 88 (356)
T 2pid_A 45 FPQTI-YCGFDPTADSLHVGHLL-ALL--GL-FHLQRAGHNVIA--LVGGA 88 (356)
T ss_dssp -CCEE-EEEECCSSSSCBHHHHH-HHH--HH-HHHHHTTCEEEE--EECTT
T ss_pred CCCEE-EEeecCCCCcccHHHHH-HHH--HH-HHHHHCCCcEEE--EEccc
Confidence 33555 999999998 9999954 333 23 344457988654 45664
No 80
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=71.31 E-value=2.9 Score=43.19 Aligned_cols=43 Identities=16% Similarity=0.257 Sum_probs=28.4
Q ss_pred EEEEecCCCCCCC-CccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcch
Q 010832 130 AVVDFSSPNIAKE-MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGT 179 (499)
Q Consensus 130 v~Ve~~SpNp~~p-lHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~ 179 (499)
+.| ||+--|||+ |||||.- .+ -.+. -|...||+| ...|+||=.
T Consensus 38 ~~v-y~G~dPTg~sLHlGh~v-~l--~~l~-~lQ~~G~~~--i~lIgD~ta 81 (432)
T 1h3f_A 38 LTV-KLGADPTRPDLHLGHAV-VL--RKMR-QFQELGHKV--VLIIGDFTG 81 (432)
T ss_dssp CEE-EEEECTTCCSCBHHHHH-HH--HHHH-HHHHTTCEE--EEEECCCC-
T ss_pred cEE-EEcccCCCCCCchhhHH-HH--HHHH-HHHHCCCCE--EEEEccceE
Confidence 444 899999997 9999975 22 2233 344579985 456778633
No 81
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=70.83 E-value=1 Score=44.84 Aligned_cols=38 Identities=11% Similarity=0.329 Sum_probs=27.1
Q ss_pred ecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCc
Q 010832 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (499)
Q Consensus 134 ~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~ 177 (499)
||+--|||.|||||.-+++.- +.++-+ ||+++ ..|.||
T Consensus 7 ysG~~PTg~lHlG~~lg~l~~--~~~lQ~--g~~~~--~~iaD~ 44 (322)
T 3tzl_A 7 LTGLQPSGDLHIGNYFGAIKQ--MVDAQE--KSQMF--MFIANY 44 (322)
T ss_dssp EEEECCSSCCBHHHHHHTHHH--HHHTTT--TSCCE--EEECHH
T ss_pred EEccCCCccccHHHHHHHHHH--HHHHhc--CCCEE--EEEecC
Confidence 788899999999998766542 444433 88874 456665
No 82
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=70.67 E-value=1.2 Score=44.78 Aligned_cols=40 Identities=20% Similarity=0.322 Sum_probs=28.3
Q ss_pred eEEEEecCCCCCCCCccchhhHhHHHHHHHHH--HHHCCCeEEEEeccCCc
Q 010832 129 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARM--LEFSNVEVLRRNHVGDW 177 (499)
Q Consensus 129 ~v~Ve~~SpNp~~plHiGH~R~~iiGD~larl--l~~~G~~V~~~~yi~D~ 177 (499)
+..| ||+--|||+|||||...++ .++ |... |+| ...|+||
T Consensus 22 ~~~v-ysG~~PTG~lHLGn~~g~l-----~~~~~lQ~~-~~~--~~~IaD~ 63 (351)
T 1yi8_B 22 RPRV-LTGDRPTGALHLGHLAGSL-----QNRVRLQDE-AEL--FVLLADV 63 (351)
T ss_dssp CSEE-EEEECCSSCCBHHHHHHTH-----HHHHHHTSS-SEE--EEEECHH
T ss_pred CcEE-EEeeCCCCCccHHHHHHHH-----HHHHHHHHh-CCe--EEEEecc
Confidence 3444 8999999999999997764 233 4434 776 5677886
No 83
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=70.31 E-value=2.6 Score=43.44 Aligned_cols=41 Identities=17% Similarity=0.410 Sum_probs=27.9
Q ss_pred EEEEecCCCCCCC-CccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCc
Q 010832 130 AVVDFSSPNIAKE-MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (499)
Q Consensus 130 v~Ve~~SpNp~~p-lHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~ 177 (499)
+.| ||+--|||+ |||||+- .+. .+ +-|...||+|+. .|+|+
T Consensus 33 ~~i-y~G~dPTg~sLHlGh~v-~l~--~~-~~lQ~~G~~~~~--lIgd~ 74 (420)
T 1jil_A 33 VTL-YCGADPTADSLHIGHLL-PFL--TL-RRFQEHGHRPIV--LIGGG 74 (420)
T ss_dssp CEE-EEEECCSSSSCBHHHHH-HHH--HH-HHHHHTTCEEEE--EECTT
T ss_pred CEE-EEeeCCCCCCccHHHHH-HHH--HH-HHHHHCCCcEEE--EEcCc
Confidence 444 999999999 9999965 222 23 445557998755 44554
No 84
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=69.85 E-value=2.4 Score=43.31 Aligned_cols=38 Identities=21% Similarity=0.392 Sum_probs=26.4
Q ss_pred ecCCCCCCC-CccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCc
Q 010832 134 FSSPNIAKE-MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (499)
Q Consensus 134 ~~SpNp~~p-lHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~ 177 (499)
||+--|||+ |||||+- .+. .+.++ ...||+|+. .|+|+
T Consensus 68 y~G~dPTg~sLHlGhlv-~l~--~l~~l-Q~~G~~~~~--lIgD~ 106 (392)
T 1y42_X 68 YVGIDPTAPSLHVGHLL-PLM--PLFWM-YLEGYKAFT--LIGGS 106 (392)
T ss_dssp EEEECCCSSSCBGGGHH-HHH--HHHHH-HHHTCEEEE--EECTT
T ss_pred EEeecCCCCCccHHHHH-HHH--HHHHH-HHcCCcEEE--EEcCc
Confidence 899999999 9999976 332 24444 446998755 44554
No 85
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=68.61 E-value=3.2 Score=42.29 Aligned_cols=43 Identities=16% Similarity=0.289 Sum_probs=29.8
Q ss_pred ceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHH-CCCeEEEEeccCCc
Q 010832 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEF-SNVEVLRRNHVGDW 177 (499)
Q Consensus 128 ~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~-~G~~V~~~~yi~D~ 177 (499)
+++.| |++--|||.||+||.-.++ +.|.|.. .|++|+. .|.|+
T Consensus 72 ~p~~i-~sG~~PTG~lHLGh~v~~~----~~~~lQ~~~g~~~~i--~IaD~ 115 (392)
T 3jxe_A 72 RGFFL-YTGRGPSGPMHIGHIIPFF----ATKWLQEKFGVNLYI--QITDD 115 (392)
T ss_dssp CCCEE-EEEECCSSCCBHHHHHHHH----HHHHHHHHHCCEEEE--EECHH
T ss_pred CCeEE-EeccCCCCchhHHHHHHHH----HHHHHHHhcCCceEE--Eecch
Confidence 33445 8888999999999986553 3344554 7987765 46675
No 86
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=68.37 E-value=3.6 Score=41.19 Aligned_cols=42 Identities=12% Similarity=0.182 Sum_probs=27.1
Q ss_pred EEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCc
Q 010832 130 AVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (499)
Q Consensus 130 v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~ 177 (499)
..| ||+--|||.|||||.-.++ -.+.++ ...||+| ...|+||
T Consensus 41 ~~v-y~G~~PTg~lHlGhyl~~l--~~~~~l-Q~~G~~~--~~~i~D~ 82 (348)
T 2j5b_A 41 FTA-YNGFEPSGRIHIAQALITV--MNTNNM-IECGGQM--IIYIADW 82 (348)
T ss_dssp EEE-EEEECCCSSCBHHHHHHHH--HHHHHH-HHTTEEE--EEEECHH
T ss_pred CEE-EeccCCCCCCchhHHHHHH--HHHHHH-HHcCCcE--EEEeccc
Confidence 344 9999999999999932221 233344 4568875 4567775
No 87
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=67.32 E-value=3.9 Score=42.25 Aligned_cols=41 Identities=20% Similarity=0.353 Sum_probs=27.6
Q ss_pred EEEEecCCCCCCC-CccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCc
Q 010832 130 AVVDFSSPNIAKE-MHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (499)
Q Consensus 130 v~Ve~~SpNp~~p-lHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~ 177 (499)
+.| ||+--|||+ |||||+- ++. .+ +-|...||+++. .|+|+
T Consensus 33 ~~i-y~G~dPTg~sLHLGhlv-~l~--~l-~~lQ~~G~~~i~--lIgD~ 74 (432)
T 2jan_A 33 MTV-YAGFDPTAPSLHAGHLV-PLL--TL-RRFQRAGHRPIV--LAGGA 74 (432)
T ss_dssp CEE-EEEECCSSSSCBGGGHH-HHH--HH-HHHHHTTCEEEE--EECHH
T ss_pred CEE-EEeeCCCCCCcCHHHHH-HHH--HH-HHHHHCCCcEEE--EEcCc
Confidence 344 899999997 9999954 332 23 444557998654 45664
No 88
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=67.29 E-value=4.3 Score=42.48 Aligned_cols=44 Identities=27% Similarity=0.360 Sum_probs=30.6
Q ss_pred CceEEEEecCCCCC-CCCccchhhHhHHHHHHHHHHHH-CCCeEEEEeccCCc
Q 010832 127 VKKAVVDFSSPNIA-KEMHVGHLRSTIIGDSLARMLEF-SNVEVLRRNHVGDW 177 (499)
Q Consensus 127 ~~~v~Ve~~SpNp~-~plHiGH~R~~iiGD~larll~~-~G~~V~~~~yi~D~ 177 (499)
++++.| ||+--|| |.|||||+-.++ +.|.|.. .|+.|+. .|+|+
T Consensus 153 ~~~~~v-y~G~dPTag~LHLGh~v~~~----~~~~lQ~~~g~~~ii--lI~D~ 198 (477)
T 1r6t_A 153 KKPFYL-YTGRGPSSEAMHVGHLIPFI----FTKWLQDVFNVPLVI--QMTDD 198 (477)
T ss_dssp TCCEEE-EEEECCCTTCCBGGGHHHHH----HHHHHHHHHTCCEEE--EECHH
T ss_pred CCCcEE-EEcccCCCCCccHHHHHHHH----HHHHHHHHhCCcEEE--EEecc
Confidence 445666 8999999 899999986544 2344555 8988655 34553
No 89
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=65.68 E-value=1.5 Score=43.96 Aligned_cols=38 Identities=18% Similarity=0.244 Sum_probs=27.0
Q ss_pred ecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCc
Q 010832 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (499)
Q Consensus 134 ~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~ 177 (499)
||+--|||.|||||...++. -.. -|.. ||++ ...|.||
T Consensus 8 ~sG~~PTG~lHLGn~vg~l~--~~~-~lQ~-~~~~--~~~IaD~ 45 (348)
T 2yy5_A 8 LTGIQASGKQHLGNYLGVMQ--SLI-ELQE-QCQL--FVFVADL 45 (348)
T ss_dssp EEEECCCTTCBHHHHHHTGG--GHH-HHHH-HSEE--EEEECHH
T ss_pred EEeeCCCCcccHHHHHHHHH--HHH-HHHh-CCcE--EEEEcCh
Confidence 88999999999999987762 111 2444 7875 5667774
No 90
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=64.21 E-value=4.4 Score=41.31 Aligned_cols=45 Identities=16% Similarity=0.155 Sum_probs=29.6
Q ss_pred CceEEEEecCCCCCC-CCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCc
Q 010832 127 VKKAVVDFSSPNIAK-EMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (499)
Q Consensus 127 ~~~v~Ve~~SpNp~~-plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~ 177 (499)
++++.| |++--||| .|||||+-.+ ..+.++-+..|..|... |+|+
T Consensus 76 ~~~~~v-y~G~~PTg~~lHLGh~v~~---~~~~~lQ~~~~~~v~i~--I~D~ 121 (395)
T 3i05_A 76 GQPFYL-YTGRGPSSESMHMGHLIPF---MFTKWLQDSFRVPLVIQ--MTDD 121 (395)
T ss_dssp TCCEEE-EEEECCCSSCCBGGGSHHH---HHHHHHHHHHTCCEEEE--ECHH
T ss_pred CCCeEE-EEeecCCCccchHHHHHHH---HHHHHHHHhcCCcEEEE--Ecch
Confidence 344556 89999999 6999997433 23444333347776665 7775
No 91
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=63.87 E-value=4.8 Score=41.59 Aligned_cols=44 Identities=27% Similarity=0.360 Sum_probs=30.3
Q ss_pred CceEEEEecCCCCC-CCCccchhhHhHHHHHHHHHHHH-CCCeEEEEeccCCc
Q 010832 127 VKKAVVDFSSPNIA-KEMHVGHLRSTIIGDSLARMLEF-SNVEVLRRNHVGDW 177 (499)
Q Consensus 127 ~~~v~Ve~~SpNp~-~plHiGH~R~~iiGD~larll~~-~G~~V~~~~yi~D~ 177 (499)
++++.| ||+--|| |.|||||+-..+ ..|.|.. .|+.|+. .|+|+
T Consensus 106 ~~~~~v-y~G~dPTag~LHLGh~v~~~----~~~~lQ~~~G~~~ii--lIgD~ 151 (437)
T 1r6u_A 106 KKPFYL-YTGRGPSSEAMHVGHLIPFI----FTKWLQDVFNVPLVI--QMTDD 151 (437)
T ss_dssp TCCEEE-EEEECCCSSCCBHHHHHHHH----HHHHHHHHHTCCEEE--EECHH
T ss_pred CCCcEE-EEcccCCCCCccHHHHHHHH----HHHHHHHHhCCcEEE--EEecc
Confidence 344566 8999999 899999986443 2344554 8988654 45564
No 92
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=62.87 E-value=5.1 Score=41.37 Aligned_cols=42 Identities=17% Similarity=0.306 Sum_probs=28.5
Q ss_pred eEEEEecCCCCC-CCCccchhhHhHHHHHHHHHHHH-CCCeEEEEeccCCc
Q 010832 129 KAVVDFSSPNIA-KEMHVGHLRSTIIGDSLARMLEF-SNVEVLRRNHVGDW 177 (499)
Q Consensus 129 ~v~Ve~~SpNp~-~plHiGH~R~~iiGD~larll~~-~G~~V~~~~yi~D~ 177 (499)
++.| ||+--|| |.|||||+-.++. + |.|.. .|+.|+. .|+||
T Consensus 102 ~~~v-y~G~dPTag~LHLGh~v~~~~---l-~~lQ~~~g~~~i~--lI~D~ 145 (432)
T 2ip1_A 102 PFFL-YTGRGPSSDSMHLGHMIPFVF---T-KWLQEVFDVPLVI--ELTDD 145 (432)
T ss_dssp CCEE-EEEECCCSSCCBGGGHHHHHH---H-HHHHHHHTCCEEE--EECHH
T ss_pred CeEE-EEeecCCCCCccHHHHHHHHH---H-HHHHHHcCCeEEE--EEecc
Confidence 3445 8999999 8999999864432 3 34554 8987544 45664
No 93
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=62.27 E-value=4 Score=41.57 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=29.5
Q ss_pred eEEEEecCCCCC-CCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCcch
Q 010832 129 KAVVDFSSPNIA-KEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGT 179 (499)
Q Consensus 129 ~v~Ve~~SpNp~-~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~G~ 179 (499)
++.| |++--|| |.|||||+-.++ .+.++.+..|..|.. -|+|++.
T Consensus 74 ~~~v-y~G~~PTa~~lHlGh~v~~~---~~~~lQ~~~~~~v~i--~I~D~~~ 119 (393)
T 3hv0_A 74 LFYL-YTGRGPSSESLHVGHLVPFL---FTKYLQDTFKVPLVI--QLTDDEK 119 (393)
T ss_dssp CCEE-EEEECCSSSSCBSTTHHHHH---HHHHHHHHHCCCEEE--EECHHHH
T ss_pred CeEE-EeCCCCCCCCccHHHHHHHH---HHHHHHHhcCCCeEe--eccChHH
Confidence 3455 8999999 689999964443 244444443666554 6888753
No 94
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=57.92 E-value=6.3 Score=40.82 Aligned_cols=45 Identities=18% Similarity=0.208 Sum_probs=30.0
Q ss_pred CceEEEEecCCCCC-CCCccchhhHhHHHHHHHHHHHHC-CCeEEEEeccCCcc
Q 010832 127 VKKAVVDFSSPNIA-KEMHVGHLRSTIIGDSLARMLEFS-NVEVLRRNHVGDWG 178 (499)
Q Consensus 127 ~~~v~Ve~~SpNp~-~plHiGH~R~~iiGD~larll~~~-G~~V~~~~yi~D~G 178 (499)
++++.| |++--|| |.|||||+-.++ .+.+ |... |..|.. -|+|+.
T Consensus 89 g~p~~v-ytG~dPTagsLHLGH~v~~~---~l~~-lQ~~~g~~v~I--~IgD~~ 135 (451)
T 3foc_A 89 GHPIYI-YTGRGPSSGALHLGHLLPFI---FTKY-LQDAFKCYVVI--QITDDE 135 (451)
T ss_dssp TCCEEE-EEEECCCSSCCBHHHHHHHH---HHHH-HHHHHTCEEEE--EECHHH
T ss_pred CCCeEE-EecCCCCCCCccHHHHHHHH---HHHH-HHHccCceEEE--EeeCcH
Confidence 344566 8999999 889999964332 2333 5555 666655 488874
No 95
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=56.03 E-value=7.1 Score=39.93 Aligned_cols=44 Identities=14% Similarity=0.289 Sum_probs=29.5
Q ss_pred CceEEEEecCCCCCC-CCccchhhHhHHHHHHHHHHHHC-CCeEEEEeccCCc
Q 010832 127 VKKAVVDFSSPNIAK-EMHVGHLRSTIIGDSLARMLEFS-NVEVLRRNHVGDW 177 (499)
Q Consensus 127 ~~~v~Ve~~SpNp~~-plHiGH~R~~iiGD~larll~~~-G~~V~~~~yi~D~ 177 (499)
++++.| |++--||| .|||||.-.+ .+.|.|... |..|.. -|+|+
T Consensus 99 ~~p~~v-y~G~~PTg~~lHLGh~v~~----~~~~~lQ~~~g~~~~i--~IaD~ 144 (406)
T 3tze_A 99 NRPFYL-YTGRGPSSKTMHIGHTIPF----LLCKYMQDAFKIRLVI--QITDD 144 (406)
T ss_dssp TCCEEE-EEEECCCSSCCBGGGHHHH----HHHHHHHHHHTCCEEE--EECHH
T ss_pred CCCeEE-EEeeCCCCCcccHHHHHHH----HHHHHHHHhcCCcEEE--EeeCh
Confidence 344566 89999998 7999996433 233445555 877665 46775
No 96
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=52.49 E-value=3.7 Score=41.02 Aligned_cols=38 Identities=16% Similarity=0.284 Sum_probs=26.1
Q ss_pred ecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCc
Q 010832 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (499)
Q Consensus 134 ~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~ 177 (499)
|++--|||+||+||.-+++ --+.++-+ ||+| .+.|.||
T Consensus 10 ~sG~~PTG~lHLGhy~g~l--~~~~~lQ~--~~~~--~~~iaD~ 47 (341)
T 3sz3_A 10 LSGVQPSGELSIGNYLGAL--RQWQQMQD--DYDC--QYCVVDL 47 (341)
T ss_dssp EEEECSSSCCBHHHHHHTG--GGHHHHHH--HSEE--EEEECHH
T ss_pred EeCcCCCCcccHHHHHHHH--HHHHHHHh--cCeE--EEEEecc
Confidence 7889999999999987665 22233333 5765 4567776
No 97
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=49.83 E-value=4.7 Score=40.98 Aligned_cols=38 Identities=13% Similarity=0.116 Sum_probs=26.1
Q ss_pred ecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCc
Q 010832 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (499)
Q Consensus 134 ~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~ 177 (499)
|++--|||+||+||.-+++- - .+-|. .||+|+ +.|.||
T Consensus 39 ~sG~~PTG~lHLGhyvGal~--~-~~~LQ-~~~~~~--~~IaD~ 76 (388)
T 3prh_A 39 FSGIQPSGSVTLGNYIGAMK--Q-FVELQ-HDYNSY--FCIVDQ 76 (388)
T ss_dssp EEEECCCSCCBHHHHHHTHH--H-HHHTT-TTSEEE--EEECHH
T ss_pred EEeeCCCCcchHHHHHHHHH--H-HHHHH-ccCcEE--EEEecc
Confidence 88999999999999865542 1 12233 388864 567775
No 98
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=44.15 E-value=13 Score=37.61 Aligned_cols=39 Identities=15% Similarity=0.268 Sum_probs=25.3
Q ss_pred ecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEeccCCc
Q 010832 134 FSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDW 177 (499)
Q Consensus 134 ~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi~D~ 177 (499)
|++--|||.|||||--.++. .+. -|...||+|+ ..|.||
T Consensus 37 y~G~~PTg~lHlG~yl~~l~--~~~-~lQ~~G~~~~--~~iaD~ 75 (375)
T 2cyc_A 37 YIGFEISGYIHLGTGLMAGA--KIA-DFQKAGIKTR--VFLADW 75 (375)
T ss_dssp EEEECCCSCCBHHHHHHHHH--HHH-HHHHTTCBCE--EEECHH
T ss_pred EeCCCCCCCcCchHHHHHHH--HHH-HHHHCCCcEE--EEecCc
Confidence 88899999999999322222 233 3445798864 456664
No 99
>1iio_A Conserved hypothetical protein MTH865; 4-helical bundle, monomer, structural genomics, unknown function; NMR {Methanothermobacterthermautotrophicus str} SCOP: a.39.4.1
Probab=38.91 E-value=13 Score=29.13 Aligned_cols=68 Identities=24% Similarity=0.267 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHHHhh-CCCCCCCccccc-cc-----CCCCcccccchHHHHHHhhcCCCCCCCChHHHHHHHHHh
Q 010832 10 NVKRELEKVFDLALKAT-VPNETDVRPLIA-AC-----TAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKN 79 (499)
Q Consensus 10 ~~~~~~~~~l~~~l~~~-~~~~~~~~~~v~-~~-----~~~~gd~~~~~a~~lak~~~~~~~~~~~p~~iA~~i~~~ 79 (499)
.++++|.+.|..+++.. +|- .+...++. -| +-+.||.+.. |+.+.|.++...--.+++.++|..|+++
T Consensus 7 ~~~~ei~~qi~~a~~~a~FPI-~s~~EL~~AlP~G~~t~c~~Gd~~~t-a~El~kll~~~DFP~ksA~~lAd~iv~r 81 (84)
T 1iio_A 7 GVKEDIRGQIIGALAGADFPI-NSPEELMAALPNGPDTTCKSGDVELK-ASDAGQVLTADDFPFKSAEEVADTIVNK 81 (84)
T ss_dssp SHHHHHHHHHHHHHTTSSSTT-BHHHHHHHHCTTSSCCCCCBTTBCCC-TTTTGGGSCGGGSBCSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCC-CCHHHHHHhCCCCCCCceeeCCEeee-HHHHHhhCCcccCCCCCHHHHHHHHHHH
Confidence 68888888888888764 441 11111221 12 2356999887 8999988764333357899999888764
No 100
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=32.01 E-value=12 Score=37.26 Aligned_cols=36 Identities=14% Similarity=0.321 Sum_probs=25.1
Q ss_pred ecCCCCCCCCccchhhHhHHHHHHHHH--HHHCCCeEEEEeccCCc
Q 010832 134 FSSPNIAKEMHVGHLRSTIIGDSLARM--LEFSNVEVLRRNHVGDW 177 (499)
Q Consensus 134 ~~SpNp~~plHiGH~R~~iiGD~larl--l~~~G~~V~~~~yi~D~ 177 (499)
|++--|||+||+||.-+++ .++ |. .+|+| .+.|.||
T Consensus 19 ~sG~~PTG~lHLGh~vg~l-----~~~~~lQ-~~~~~--~~~iaD~ 56 (346)
T 3n9i_A 19 FSGAQPSGELTIGNYMGAL-----RQWVQMQ-DDYDC--IYCIVDL 56 (346)
T ss_dssp EEEECSCSCCBHHHHHHTH-----HHHHTTT-TTSEE--EEEECHH
T ss_pred EECcCCCCcccHHHHHHHH-----HHHHHHH-hhCcE--EEEEecc
Confidence 7899999999999975553 333 33 26765 4567775
No 101
>3r6u_A Choline-binding protein; substrate binding protein, ABC-transporter, extracellular, transport protein; 1.61A {Bacillus subtilis} SCOP: c.94.1.0 PDB: 3ppq_A 3ppo_A* 3ppp_A 3ppn_A 3ppr_A*
Probab=23.08 E-value=48 Score=31.79 Aligned_cols=39 Identities=18% Similarity=0.394 Sum_probs=31.4
Q ss_pred CCCccchh---hHhHHHHHHHHHHHHC-CCeEEEEeccCCcch
Q 010832 141 KEMHVGHL---RSTIIGDSLARMLEFS-NVEVLRRNHVGDWGT 179 (499)
Q Consensus 141 ~plHiGH~---R~~iiGD~larll~~~-G~~V~~~~yi~D~G~ 179 (499)
+++.||.. =+.+++..++-+|+.. ||+|.....+++...
T Consensus 12 ~~I~ig~~~~te~~il~~i~~~~Le~~~G~~V~~~~~lg~~~~ 54 (284)
T 3r6u_A 12 QTIKIGAQSMSESEIIASMLGQLIEHHTDLKTTTIKNLGSNAV 54 (284)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHHHHSSCCEEEEEEECSHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHHHhcCCCCeEEEecCCchHH
Confidence 55666664 4679999999999998 999999998877443
No 102
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=22.26 E-value=60 Score=35.41 Aligned_cols=35 Identities=6% Similarity=0.010 Sum_probs=23.7
Q ss_pred CCCCCccchhhHhHHHHHHHHHHHHC-CCeEEEEeccCCc
Q 010832 139 IAKEMHVGHLRSTIIGDSLARMLEFS-NVEVLRRNHVGDW 177 (499)
Q Consensus 139 p~~plHiGH~R~~iiGD~larll~~~-G~~V~~~~yi~D~ 177 (499)
++|.||+||+-.. =-+|..+++.. |++ .+..|+||
T Consensus 390 s~g~lHLGh~v~~--~k~l~~~~~~~~g~~--v~ilIaD~ 425 (690)
T 3p0j_A 390 ALLKVPLDVAEGM--IKVTKDFIAAHPEGT--VTLVLPDW 425 (690)
T ss_dssp CCSSCBHHHHHHH--HHHHHHHHHHCSSCE--EEEEECTT
T ss_pred CCCCcccchHHHH--HHHHHHHHHHcCCCe--EEEEEecc
Confidence 7999999998432 23466666653 565 55578887
No 103
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=21.55 E-value=1.1e+02 Score=26.54 Aligned_cols=35 Identities=9% Similarity=0.174 Sum_probs=26.7
Q ss_pred CCCCccchhhHhHHHHHHHHHHHHCCCeEEEEecc
Q 010832 140 AKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHV 174 (499)
Q Consensus 140 ~~plHiGH~R~~iiGD~larll~~~G~~V~~~~yi 174 (499)
+..++||++-..+--+-|..++...|..|..+..+
T Consensus 120 ~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~ 154 (198)
T 1qm9_A 120 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFF 154 (198)
T ss_dssp CCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEES
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEE
Confidence 45578999887777888999999999766665543
No 104
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=20.73 E-value=1.6e+02 Score=28.18 Aligned_cols=40 Identities=15% Similarity=0.176 Sum_probs=32.7
Q ss_pred CCceEEEEecCCCCCCCCccchhhHhHHHHHHHHHHHHCCCeEEEEe
Q 010832 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRN 172 (499)
Q Consensus 126 ~~~~v~Ve~~SpNp~~plHiGH~R~~iiGD~larll~~~G~~V~~~~ 172 (499)
...||+|=+++|+|.+ -|..+.+....-|+..|++|+...
T Consensus 21 ~~MKiLII~aHP~~~S-------~n~aL~~~~~~~l~~~G~eV~v~D 60 (280)
T 4gi5_A 21 QSMKVLLIYAHPEPRS-------LNGALKNFAIRHLQQAGHEVQVSD 60 (280)
T ss_dssp -CCEEEEEECCSCTTS-------HHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred hCCeEEEEEeCCCCcc-------HHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4678999899998653 466788999999999999999876
Done!