BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010833
(499 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CYG|A Chain A, Crystal Structure At 1.45- Resolution Of The Major
Allergen Endo-Beta-1,3-Glucanase Of Banana As A
Molecular Basis For The Latex-Fruit Syndrome
Length = 312
Score = 220 bits (561), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 127/322 (39%), Positives = 196/322 (60%), Gaps = 10/322 (3%)
Query: 24 IGVNIGTDLSDMPSPTQVVALLKAQNIRHIRLYDADRAMLLALANTGIQVTISVPNDQLL 83
IGV G +++P P++VV+L K+ NI +RLYD ++A L AL N+ IQV + VP +
Sbjct: 1 IGVCYGMLGNNLPPPSEVVSLYKSNNIARMRLYDPNQAALQALRNSNIQVLLDVPRSDVQ 60
Query: 84 GIGQSNATAANWVARHVAAHVPTTNITAIAVGSEVLTVLPNAGPVLVSALKFIHSALVAA 143
+ + + A +W+ R+V A+ P+ + IAVG+E++ + ++ A++ I++AL +A
Sbjct: 61 SLASNPSAAGDWIRRNVVAYWPSVSFRYIAVGNELIPG-SDLAQYILPAMRNIYNALSSA 119
Query: 144 NLDDQIKVSTPHSSSIILDSFPPSQAFFNRSWDPVMVPLLKFLQSTGSYLMLNVYPYYDY 203
L +QIKVST + ++ S+PPS F+ + + P+++FL S G+ L++NVYPY+ Y
Sbjct: 120 GLQNQIKVSTAVDTGVLGTSYPPSAGAFSSAAQAYLSPIVQFLASNGAPLLVNVYPYFSY 179
Query: 204 MQSNGVIPLDYALFRPLPPNKEAVDANTLLHYTNVFDAIVDAAYFAMSDLNFTNIPLVVL 263
+ G I L YALF V + Y N+FDAIVDA + A+ + N+ +VV
Sbjct: 180 TGNPGQISLPYALFTA----SGVVVQDGRFSYQNLFDAIVDAVFAALERVGGANVAVVVS 235
Query: 264 ESGWPSKGDSSESDATIDNANTYNSNLIRHVLNNTGTPKHPGIAVSTYIYELYNEDLRPG 323
ESGWPS G +E A+ NA TYN NLIRHV GTP+ PG + YI+E++NE+ + G
Sbjct: 236 ESGWPSAGGGAE--ASTSNAQTYNQNLIRHV--GGGTPRRPGKEIEAYIFEMFNENQKAG 291
Query: 324 SVSEKNWGLFNANGVPVYTLHL 345
+ E+N+GLF N PVY +
Sbjct: 292 GI-EQNFGLFYPNKQPVYQISF 312
>pdb|3UR7|A Chain A, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR7|B Chain B, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|A Chain A, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|B Chain B, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
Length = 323
Score = 204 bits (520), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 116/326 (35%), Positives = 180/326 (55%), Gaps = 16/326 (4%)
Query: 24 IGVNIGTDLSDMPSPTQVVALLKAQNIRHIRLYDADRAMLLALANTGIQVTISVPNDQLL 83
IGV G +++PS V+ L A NI+ +R+Y + AL + I++ + VPN L
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLE 62
Query: 84 GIGQSNATAAN-WVARHVAAHVPTTNITAIAVGSEVLTVLPNA--GPVLVSALKFIHSAL 140
+ +N + AN WV ++ H P IAVG+EV + + A++ I++AL
Sbjct: 63 AL--ANPSNANGWVQDNIRNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNAL 120
Query: 141 VAANLDDQIKVSTPHSSSIILDSFPPSQAFFNRSWDPVMVPLLKFLQSTGSYLMLNVYPY 200
+A L +QIKVST S ++ +++PP + F + + P++ FL L+ N+YPY
Sbjct: 121 SSAGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANIYPY 180
Query: 201 YDYMQSNGVIPLDYALFRPLPPNKEAVDANTLLHYTNVFDAIVDAAYFAMSDLNFTNIPL 260
+ ++ + +PL YALF N Y N+FDA+VD+ YFA L NI +
Sbjct: 181 FGHIDNTNAVPLSYALFNQQRRNDTG--------YQNLFDALVDSMYFATEKLGGQNIEI 232
Query: 261 VVLESGWPSKGDSSESDATIDNANTYNSNLIRHVLNNTGTPKHPGIAVSTYIYELYNEDL 320
+V ESGWPS+G + AT+ NA TY +NLI HV GTPK PG + TY++ +++E+
Sbjct: 233 IVSESGWPSEGHPA---ATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENE 289
Query: 321 RPGSVSEKNWGLFNANGVPVYTLHLT 346
+ G SEK++GLFN + P Y L+
Sbjct: 290 KKGEASEKHFGLFNPDQRPKYQLNFN 315
>pdb|4GZI|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose
pdb|4GZJ|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose And Laminaratetrose
Length = 323
Score = 201 bits (512), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 115/326 (35%), Positives = 179/326 (54%), Gaps = 16/326 (4%)
Query: 24 IGVNIGTDLSDMPSPTQVVALLKAQNIRHIRLYDADRAMLLALANTGIQVTISVPNDQLL 83
IGV G +++PS V+ L A NI+ +R+Y + AL + I++ + VPN L
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLE 62
Query: 84 GIGQSNATAAN-WVARHVAAHVPTTNITAIAVGSEVLTVLPNA--GPVLVSALKFIHSAL 140
+ +N + AN WV ++ H P IAVG+EV + + A++ I++AL
Sbjct: 63 AL--ANPSNANGWVQDNIRNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNAL 120
Query: 141 VAANLDDQIKVSTPHSSSIILDSFPPSQAFFNRSWDPVMVPLLKFLQSTGSYLMLNVYPY 200
+A L +QIKVST S ++ +++PP + F + + P++ FL L+ N+YPY
Sbjct: 121 SSAGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANIYPY 180
Query: 201 YDYMQSNGVIPLDYALFRPLPPNKEAVDANTLLHYTNVFDAIVDAAYFAMSDLNFTNIPL 260
+ ++ + +PL YALF N Y N+FDA+VD+ YFA L NI +
Sbjct: 181 FGHIDNTNAVPLSYALFNQQRRNDTG--------YQNLFDALVDSMYFATEKLGGQNIEI 232
Query: 261 VVLESGWPSKGDSSESDATIDNANTYNSNLIRHVLNNTGTPKHPGIAVSTYIYELYNEDL 320
+V SGWPS+G + AT+ NA TY +NLI HV GTPK PG + TY++ +++E+
Sbjct: 233 IVSASGWPSEGHPA---ATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENE 289
Query: 321 RPGSVSEKNWGLFNANGVPVYTLHLT 346
+ G SEK++GLFN + P Y L+
Sbjct: 290 KKGEASEKHFGLFNPDQRPKYQLNFN 315
>pdb|1GHS|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
pdb|1GHS|B Chain B, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 191 bits (486), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 125/322 (38%), Positives = 182/322 (56%), Gaps = 16/322 (4%)
Query: 24 IGVNIGTDLSDMPSPTQVVALLKAQNIRHIRLYDADRAMLLALANTGIQVTISVPNDQLL 83
IGV G +++PS + VV L +++ I +R+Y AD L AL N+GI + + + NDQL
Sbjct: 1 IGVCYGVIGNNLPSRSDVVQLYRSKGINGMRIYFADGQALSALRNSGIGLILDIGNDQLA 60
Query: 84 GIGQSNATAANWVARHVAAHVPTTNITAIAVGSEVLTVLPNAGPVLVSALKFIHSALVAA 143
I S + AA+WV +V + P NI IA G+EV A ++ A++ +++AL AA
Sbjct: 61 NIAASTSNAASWVQNNVRPYYPAVNIKYIAAGNEVQG---GATQSILPAMRNLNAALSAA 117
Query: 144 NLDDQIKVSTPHSSSIILDSFPPSQAFFNRSWDPVMVPLLKFLQSTGSYLMLNVYPYYDY 203
IKVST + +SFPPS F ++ M + + L STG+ L+ NVYPY+ Y
Sbjct: 118 -GLGAIKVSTSIRFDEVANSFPPSAGVFKNAY---MTDVARLLASTGAPLLANVYPYFAY 173
Query: 204 MQSNGVIPLDYALFRPLPPNKEAVDANTLLHYTNVFDAIVDAAYFAMSDLNFTNIPLVVL 263
+ G I L+YA F+ P D N L YT++FDA+VDA Y A+ + +VV
Sbjct: 174 RDNPGSISLNYATFQ---PGTTVRDQNNGLTYTSLFDAMVDAVYAALEKAGAPAVKVVVS 230
Query: 264 ESGWPSKGDSSESDATIDNANTYNSNLIRHVLNNTGTPKHPGIAVSTYIYELYNEDLRPG 323
ESGWPS G + A+ NA TYN LI HV GTPK A+ TYI+ ++NE+ + G
Sbjct: 231 ESGWPSAGGFA---ASAGNARTYNQGLINHV--GGGTPKKRE-ALETYIFAMFNENQKTG 284
Query: 324 SVSEKNWGLFNANGVPVYTLHL 345
+E+++GLFN + P Y +
Sbjct: 285 DATERSFGLFNPDKSPAYNIQF 306
>pdb|1AQ0|A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1AQ0|B Chain B, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1GHR|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 185 bits (470), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 125/322 (38%), Positives = 179/322 (55%), Gaps = 16/322 (4%)
Query: 24 IGVNIGTDLSDMPSPTQVVALLKAQNIRHIRLYDADRAMLLALANTGIQVTISVPNDQLL 83
IGV G +++P+ + VV++ K+ I+ +RLY ++A L A+ TGI V + PND L
Sbjct: 1 IGVCYGMSANNLPAASTVVSMFKSNGIKSMRLYAPNQAALQAVGGTGINVVVGAPNDVLS 60
Query: 84 GIGQSNATAANWVARHVAAHVPTTNITAIAVGSEVLTVLPNAGPVLVSALKFIHSALVAA 143
+ S A AA+WV ++ A+ P + + VG+EV A LV A+K +H ALVAA
Sbjct: 61 NLAASPAAAASWVKSNIQAY-PKVSFRYVCVGNEVAG---GATRNLVPAMKNVHGALVAA 116
Query: 144 NLDDQIKVSTPHSSSIILDSFPPSQAFFNRSWDPVMVPLLKFLQSTGSYLMLNVYPYYDY 203
L IKV+T S +I+ PPS F M P+++FL T + LM N+YPY +
Sbjct: 117 GL-GHIKVTTSVSQAILGVFSPPSAGSFTGEAAAFMGPVVQFLARTNAPLMANIYPYLAW 175
Query: 204 MQSNGVIPLDYALFRPLPPNKEAVDANTLLHYTNVFDAIVDAAYFAMSDLNFTNIPLVVL 263
+ + + YALF V + Y N+FD VDA Y AM +++ LVV
Sbjct: 176 AYNPSAMDMGYALFNA----SGTVVRDGAYGYQNLFDTTVDAFYTAMGKHGGSSVKLVVS 231
Query: 264 ESGWPSKGDSSESDATIDNANTYNSNLIRHVLNNTGTPKHPGIAVSTYIYELYNEDLRPG 323
ESGWPS G ++ AT NA YN +LI HV GTP+HPG A+ TYI+ ++NE+ +
Sbjct: 232 ESGWPSGGGTA---ATPANARFYNQHLINHV--GRGTPRHPG-AIETYIFAMFNENQKDS 285
Query: 324 SVSEKNWGLFNANGVPVYTLHL 345
V E+NWGLF N VY ++
Sbjct: 286 GV-EQNWGLFYPNMQHVYPINF 306
>pdb|3EM5|A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|B Chain B, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|C Chain C, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|D Chain D, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3F55|A Chain A, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|B Chain B, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|C Chain C, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|D Chain D, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
Length = 316
Score = 184 bits (468), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 119/328 (36%), Positives = 184/328 (56%), Gaps = 18/328 (5%)
Query: 24 IGVNIGTDLSDMPSPTQVVALLKAQNIRHIRLYDADRAMLLALANTGIQVTISVPNDQLL 83
+GV G +++P ++V+AL K NI +R+YD ++A+L AL + I++ + VPN L
Sbjct: 2 VGVCYGMQGNNLPPVSEVIALYKKSNITRMRIYDPNQAVLEALRGSNIELILGVPNSDLQ 61
Query: 84 GIGQSNATAANWVARHVAAHVPTTNITAIAVGSEVLTVLPNAGPVLVS-----ALKFIHS 138
+ + A +WV ++V + IAVG+E+ V N G ++ A++ IH
Sbjct: 62 SLTNP-SNAKSWVQKNVRGFWSSVRFRYIAVGNEISPV--NRGTAWLAQFVLPAMRNIHD 118
Query: 139 ALVAANLDDQIKVSTPHSSSIILDSFPPSQAFFNRSWDPVMVPLLKFLQSTGSYLMLNVY 198
A+ +A L DQIKVST +++ +S+PPS F + P+++FL S S L+ N+Y
Sbjct: 119 AIRSAGLQDQIKVSTAIDLTLVGNSYPPSAGAFRDDVRSYLNPIIRFLSSIRSPLLANIY 178
Query: 199 PYYDYMQSNGVIPLDYALFRPLPPNKEAVDANTLLHYTNVFDAIVDAAYFAMSDLNFTNI 258
PY+ Y + I L YALF P+ D Y N+FDA +DA Y A+ + ++
Sbjct: 179 PYFTYAGNPRDISLPYALF--TSPSVVVWDGQR--GYKNLFDATLDALYSALERASGGSL 234
Query: 259 PLVVLESGWPSKGDSSESDATIDNANTYNSNLIRHVLNNTGTPKHPGIAVSTYIYELYNE 318
+VV ESGWPS G + AT DN TY SNLI+HV GTPK P A+ TY++ +++E
Sbjct: 235 EVVVSESGWPSAGAFA---ATFDNGRTYLSNLIQHV--KRGTPKRPKRAIETYLFAMFDE 289
Query: 319 DLRPGSVSEKNWGLFNANGVPVYTLHLT 346
+ + V EK++GLF N Y L+ +
Sbjct: 290 NKKQPEV-EKHFGLFFPNKWQKYNLNFS 316
>pdb|2JON|A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9
Length = 101
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 360 TFCVAKDGADKKMLQAALDWACGPGKVDCSALLQGQPCYEPDNVISHSMYAFNAYYQQMA 419
++CV K G L +++AC G +DC + G C+EP+ V +H+ Y N YYQ
Sbjct: 12 SWCVPKPGVSDDQLTGNINYACSQG-IDCGPIQPGGACFEPNTVKAHAAYVMNLYYQHAG 70
Query: 420 KAPGTCDFKGVATITTTDPSHGSCIFP 446
+ CDF AT+T T+PS+G+C FP
Sbjct: 71 RNSWNCDFSQTATLTNTNPSYGACNFP 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,794,328
Number of Sequences: 62578
Number of extensions: 639527
Number of successful extensions: 1454
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1410
Number of HSP's gapped (non-prelim): 18
length of query: 499
length of database: 14,973,337
effective HSP length: 103
effective length of query: 396
effective length of database: 8,527,803
effective search space: 3377009988
effective search space used: 3377009988
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)