Query 010833
Match_columns 499
No_of_seqs 253 out of 1623
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 05:05:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010833.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010833hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 4.7E-86 1E-90 673.6 20.5 310 24-345 1-310 (310)
2 COG5309 Exo-beta-1,3-glucanase 100.0 7.5E-40 1.6E-44 318.9 23.3 252 20-337 42-305 (305)
3 smart00768 X8 Possibly involve 100.0 4.1E-29 8.9E-34 209.3 8.3 85 360-445 1-85 (85)
4 PF07983 X8: X8 domain; Inter 99.9 2E-22 4.2E-27 166.2 6.1 69 360-432 1-78 (78)
5 PF03198 Glyco_hydro_72: Gluca 99.8 1.7E-18 3.8E-23 174.8 9.0 237 24-340 30-296 (314)
6 PF07745 Glyco_hydro_53: Glyco 99.0 7.2E-08 1.6E-12 99.9 21.9 242 38-342 26-328 (332)
7 COG3867 Arabinogalactan endo-1 98.5 2E-06 4.3E-11 86.6 13.8 252 38-344 65-389 (403)
8 PRK10150 beta-D-glucuronidase; 98.2 0.00041 8.9E-09 77.6 24.2 242 39-343 316-585 (604)
9 PF00150 Cellulase: Cellulase 98.0 0.00036 7.7E-09 69.1 18.1 128 23-152 10-171 (281)
10 smart00633 Glyco_10 Glycosyl h 97.2 0.03 6.4E-07 56.0 18.5 79 246-342 171-250 (254)
11 TIGR03356 BGL beta-galactosida 96.3 0.36 7.7E-06 52.2 19.7 80 38-119 56-163 (427)
12 PF11790 Glyco_hydro_cc: Glyco 96.1 0.49 1.1E-05 47.1 17.9 190 71-339 39-232 (239)
13 PF02836 Glyco_hydro_2_C: Glyc 95.4 0.27 5.9E-06 50.0 13.2 121 23-154 17-157 (298)
14 PF00232 Glyco_hydro_1: Glycos 94.8 0.2 4.2E-06 54.5 10.7 117 38-158 60-224 (455)
15 PRK10340 ebgA cryptic beta-D-g 93.7 1.8 3.9E-05 51.9 16.6 97 24-120 337-452 (1021)
16 PLN02998 beta-glucosidase 93.4 3.5 7.5E-05 45.6 17.1 47 38-84 84-149 (497)
17 PLN02814 beta-glucosidase 92.4 11 0.00024 41.7 19.2 47 38-84 79-144 (504)
18 PLN02849 beta-glucosidase 90.3 31 0.00067 38.3 20.0 47 38-84 81-146 (503)
19 PF02449 Glyco_hydro_42: Beta- 88.9 1.4 2.9E-05 46.6 7.9 83 38-120 12-140 (374)
20 cd02875 GH18_chitobiase Chitob 82.7 32 0.0007 36.3 14.4 133 49-201 55-190 (358)
21 PRK09936 hypothetical protein; 78.5 44 0.00095 34.6 13.0 129 24-154 22-181 (296)
22 PRK09593 arb 6-phospho-beta-gl 78.2 1.1E+02 0.0025 33.6 21.7 47 38-84 75-141 (478)
23 PF01229 Glyco_hydro_39: Glyco 72.8 1.1E+02 0.0023 33.7 15.3 248 44-340 48-350 (486)
24 PRK09525 lacZ beta-D-galactosi 72.5 24 0.00051 42.6 10.8 96 24-119 353-464 (1027)
25 COG3934 Endo-beta-mannanase [C 68.3 21 0.00045 39.3 8.1 91 93-203 123-213 (587)
26 PF00925 GTP_cyclohydro2: GTP 62.1 10 0.00023 35.7 4.1 37 42-78 132-168 (169)
27 smart00481 POLIIIAc DNA polyme 61.6 28 0.00061 27.0 5.9 44 35-78 14-62 (67)
28 PRK00393 ribA GTP cyclohydrola 55.5 19 0.00041 34.9 4.8 36 42-77 134-169 (197)
29 TIGR00505 ribA GTP cyclohydrol 55.4 19 0.00042 34.6 4.8 34 42-75 131-164 (191)
30 PLN03059 beta-galactosidase; P 55.2 1.8E+02 0.004 34.4 13.3 117 38-156 61-223 (840)
31 COG4782 Uncharacterized protei 54.7 42 0.00091 35.8 7.4 60 235-297 125-187 (377)
32 PF03662 Glyco_hydro_79n: Glyc 53.8 40 0.00087 35.3 7.1 82 61-142 113-202 (319)
33 PF14488 DUF4434: Domain of un 53.3 1.9E+02 0.0042 27.1 11.1 101 38-143 22-151 (166)
34 PF02055 Glyco_hydro_30: O-Gly 52.7 2.1E+02 0.0046 31.8 12.9 91 62-152 159-277 (496)
35 COG2730 BglC Endoglucanase [Ca 48.7 1.3E+02 0.0029 32.2 10.4 106 39-144 76-219 (407)
36 TIGR01579 MiaB-like-C MiaB-lik 47.9 1.5E+02 0.0034 31.6 10.7 63 123-204 269-331 (414)
37 PRK12485 bifunctional 3,4-dihy 46.5 24 0.00051 37.7 4.1 34 41-75 330-363 (369)
38 cd00641 GTP_cyclohydro2 GTP cy 45.7 33 0.00072 33.0 4.7 37 42-78 133-169 (193)
39 cd00598 GH18_chitinase-like Th 44.3 1.2E+02 0.0025 28.6 8.2 84 61-145 53-142 (210)
40 PF13721 SecD-TM1: SecD export 44.2 1.4E+02 0.003 25.9 7.9 37 19-55 29-65 (101)
41 cd02874 GH18_CFLE_spore_hydrol 42.6 1.1E+02 0.0025 31.1 8.4 83 60-145 48-138 (313)
42 PF13377 Peripla_BP_3: Peripla 42.1 59 0.0013 28.8 5.6 121 42-185 1-133 (160)
43 PF05990 DUF900: Alpha/beta hy 42.1 67 0.0015 31.7 6.4 44 250-296 42-88 (233)
44 PRK14019 bifunctional 3,4-dihy 42.0 31 0.00068 36.8 4.2 36 42-78 328-363 (367)
45 PRK13210 putative L-xylulose 5 41.3 3.6E+02 0.0078 26.6 17.2 47 29-75 6-70 (284)
46 COG1433 Uncharacterized conser 39.2 66 0.0014 29.0 5.2 40 39-78 55-94 (121)
47 cd01543 PBP1_XylR Ligand-bindi 38.9 3.1E+02 0.0067 26.4 10.5 129 38-186 97-238 (265)
48 PRK13511 6-phospho-beta-galact 37.7 73 0.0016 35.0 6.4 77 38-119 56-162 (469)
49 PRK09314 bifunctional 3,4-dihy 37.2 44 0.00096 35.3 4.4 34 41-74 300-334 (339)
50 PRK09318 bifunctional 3,4-dihy 36.7 50 0.0011 35.5 4.7 38 42-79 320-357 (387)
51 PRK08815 GTP cyclohydrolase; P 36.2 51 0.0011 35.3 4.7 38 42-79 305-342 (375)
52 PLN02831 Bifunctional GTP cycl 35.7 50 0.0011 36.2 4.7 37 42-78 373-409 (450)
53 PF14587 Glyco_hydr_30_2: O-Gl 34.8 5.8E+02 0.012 27.6 12.2 99 61-160 108-233 (384)
54 PRK09311 bifunctional 3,4-dihy 34.6 55 0.0012 35.4 4.7 38 41-78 338-375 (402)
55 PRK09989 hypothetical protein; 34.5 4.5E+02 0.0099 25.7 11.1 51 24-75 4-58 (258)
56 PRK14334 (dimethylallyl)adenos 34.4 3.7E+02 0.008 29.1 11.1 60 123-201 268-327 (440)
57 smart00636 Glyco_18 Glycosyl h 34.2 1.6E+02 0.0034 30.2 7.9 80 63-143 57-142 (334)
58 PLN00196 alpha-amylase; Provis 34.1 1.7E+02 0.0036 31.9 8.4 55 24-78 29-113 (428)
59 PRK09319 bifunctional 3,4-dihy 33.2 60 0.0013 36.5 4.8 39 41-79 342-380 (555)
60 COG3250 LacZ Beta-galactosidas 32.7 1.9E+02 0.0042 34.2 9.0 97 24-120 303-409 (808)
61 cd04743 NPD_PKS 2-Nitropropane 32.4 2.8E+02 0.0061 29.1 9.3 95 22-134 56-151 (320)
62 cd06545 GH18_3CO4_chitinase Th 32.0 1.3E+02 0.0027 29.9 6.6 81 61-145 50-133 (253)
63 KOG0093 GTPase Rab3, small G p 30.3 92 0.002 29.4 4.7 59 52-118 71-136 (193)
64 TIGR03632 bact_S11 30S ribosom 29.3 1.1E+02 0.0025 26.7 5.0 38 38-75 49-91 (108)
65 PF14465 NFRKB_winged: NFRKB W 28.1 46 0.001 29.0 2.3 35 171-205 41-75 (100)
66 cd02872 GH18_chitolectin_chito 27.4 1.8E+02 0.0038 30.3 7.0 75 69-144 69-151 (362)
67 PF14871 GHL6: Hypothetical gl 27.4 1.4E+02 0.0031 27.0 5.5 43 38-80 2-67 (132)
68 PRK14328 (dimethylallyl)adenos 26.6 4.8E+02 0.01 28.2 10.4 62 123-203 278-339 (439)
69 PRK07198 hypothetical protein; 26.4 60 0.0013 35.0 3.2 38 42-79 338-376 (418)
70 COG4213 XylF ABC-type xylose t 25.9 1.9E+02 0.0041 30.5 6.6 77 60-155 175-251 (341)
71 TIGR00640 acid_CoA_mut_C methy 25.9 2.8E+02 0.006 25.0 7.1 45 36-80 40-96 (132)
72 PF00331 Glyco_hydro_10: Glyco 25.9 97 0.0021 32.1 4.7 219 61-341 63-311 (320)
73 PRK13347 coproporphyrinogen II 25.0 88 0.0019 34.0 4.3 22 126-147 262-283 (453)
74 PF02579 Nitro_FeMo-Co: Dinitr 25.0 2.5E+02 0.0054 22.7 6.2 39 38-76 42-80 (94)
75 COG5016 Pyruvate/oxaloacetate 24.2 1.8E+02 0.0039 31.7 6.2 92 38-136 96-197 (472)
76 PF13547 GTA_TIM: GTA TIM-barr 23.9 1.2E+02 0.0025 31.5 4.6 80 106-199 17-108 (299)
77 PRK09004 FMN-binding protein M 23.3 5.6E+02 0.012 23.2 10.9 113 23-147 3-116 (146)
78 PF00411 Ribosomal_S11: Riboso 22.7 1.3E+02 0.0029 26.3 4.3 37 39-75 50-91 (110)
79 TIGR03628 arch_S11P archaeal r 22.6 1.7E+02 0.0036 26.2 4.8 38 38-75 52-102 (114)
80 COG3534 AbfA Alpha-L-arabinofu 22.4 1.1E+03 0.024 26.2 11.8 154 23-198 33-244 (501)
81 TIGR01125 MiaB-like tRNA modif 22.2 5.9E+02 0.013 27.4 10.0 63 123-204 266-328 (430)
82 PRK06552 keto-hydroxyglutarate 22.2 7.5E+02 0.016 24.2 10.0 87 37-141 118-210 (213)
83 KOG0078 GTP-binding protein SE 22.1 1.9E+02 0.0042 28.5 5.6 80 20-118 41-127 (207)
84 COG0807 RibA GTP cyclohydrolas 21.7 1.7E+02 0.0037 28.6 5.1 40 42-81 133-172 (193)
85 PRK14042 pyruvate carboxylase 21.4 3.4E+02 0.0074 31.0 8.1 43 38-80 94-146 (596)
86 COG0621 MiaB 2-methylthioadeni 21.0 3.1E+02 0.0067 30.1 7.4 131 22-203 194-337 (437)
87 PRK09607 rps11p 30S ribosomal 20.7 2.2E+02 0.0049 26.0 5.4 38 38-75 59-109 (132)
88 PF03102 NeuB: NeuB family; I 20.6 2.1E+02 0.0046 28.7 5.7 55 39-97 79-136 (241)
89 PF00834 Ribul_P_3_epim: Ribul 20.2 5.8E+02 0.012 24.7 8.5 96 38-149 69-169 (201)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=4.7e-86 Score=673.65 Aligned_cols=310 Identities=51% Similarity=0.870 Sum_probs=257.0
Q ss_pred eeEEecCCCCCCCCHHHHHHHHHhCCCCEEEEccCCHHHHHHHHhcCCEEEEecCCCccccccccHHHHHHHHHHHhccc
Q 010833 24 IGVNIGTDLSDMPSPTQVVALLKAQNIRHIRLYDADRAMLLALANTGIQVTISVPNDQLLGIGQSNATAANWVARHVAAH 103 (499)
Q Consensus 24 iGvnYg~~~~n~p~~~~vv~llk~~~i~~VRlYdad~~vL~Ala~tgi~V~vgV~n~~~~~ia~~~~~A~~Wv~~~v~~y 103 (499)
||||||+.++|+|+|.+++++||+++|++|||||+|+++|+||++|||+|++||+|++++++++++..|..||++||.+|
T Consensus 1 iGvnyG~~~~nlp~p~~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv~~~ 80 (310)
T PF00332_consen 1 IGVNYGRVGNNLPSPCKVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNVLPY 80 (310)
T ss_dssp EEEEE---SSS---HHHHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHTCTC
T ss_pred CeEeccCccCCCCCHHHHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEeccccccCCCCChHHHHHHHHHHHHHHHhCCCCCceEEecccccccccccCCCCcccccCCcchhhhhHH
Q 010833 104 VPTTNITAIAVGSEVLTVLPNAGPVLVSALKFIHSALVAANLDDQIKVSTPHSSSIILDSFPPSQAFFNRSWDPVMVPLL 183 (499)
Q Consensus 104 ~p~~~I~~I~VGNEvl~~~~~~~~~Ll~am~nv~~aL~~~gl~~~IkVsT~~s~~vl~~s~pPS~~~F~~~~~~~l~~ll 183 (499)
+|.++|++|+||||++...... .|+|||+++|++|++.||+++|||+|+++++++.++||||+|.|++++.++|++++
T Consensus 81 ~~~~~i~~i~VGnEv~~~~~~~--~lvpAm~ni~~aL~~~~L~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~~~~~~~l 158 (310)
T PF00332_consen 81 LPAVNIRYIAVGNEVLTGTDNA--YLVPAMQNIHNALTAAGLSDQIKVSTPHSMDVLSNSFPPSAGVFRSDIASVMDPLL 158 (310)
T ss_dssp TTTSEEEEEEEEES-TCCSGGG--GHHHHHHHHHHHHHHTT-TTTSEEEEEEEGGGEEE-SSGGG-EESHHHHHHHHHHH
T ss_pred CcccceeeeecccccccCccce--eeccHHHHHHHHHHhcCcCCcceeccccccccccccCCCccCcccccchhhhhHHH
Confidence 9999999999999999864433 99999999999999999998999999999999999999999999999999999999
Q ss_pred HHHHhcCCccccccccccccccCCCCcCcccccccCCCCCCceecCCCccccccHHHHHHHHHHHHHHhcCCCCccEEEE
Q 010833 184 KFLQSTGSYLMLNVYPYYDYMQSNGVIPLDYALFRPLPPNKEAVDANTLLHYTNVFDAIVDAAYFAMSDLNFTNIPLVVL 263 (499)
Q Consensus 184 ~fL~~t~s~~~vN~YPyf~~~~~~~~i~ld~AlF~~~~~~~~~~d~~~~~~Y~n~fDa~~Dav~~am~~~g~~~v~vvVt 263 (499)
+||.+++||||+|+||||+|..++..++||||+|+ ++.+++|. +++|+||||+|+|++++||+++|+++++|+|+
T Consensus 159 ~fL~~t~spf~vN~yPyfa~~~~~~~~~l~yAlf~---~~~~~~D~--~~~y~nlfDa~~da~~~a~~~~g~~~~~vvv~ 233 (310)
T PF00332_consen 159 KFLDGTNSPFMVNVYPYFAYQNNPQNISLDYALFQ---PNSGVVDG--GLAYTNLFDAMVDAVYAAMEKLGFPNVPVVVG 233 (310)
T ss_dssp HHHHHHT--EEEE--HHHHHHHSTTTS-HHHHTT----SSS-SEET--TEEESSHHHHHHHHHHHHHHTTT-TT--EEEE
T ss_pred HHhhccCCCceeccchhhhccCCcccCCccccccc---cccccccc--chhhhHHHHHHHHHHHHHHHHhCCCCceeEEe
Confidence 99999999999999999999999999999999999 56666766 78999999999999999999999999999999
Q ss_pred eeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHccCCCCCCCCCceeEEEEEeecCCCCCCCCCCcccccccCCCCceeee
Q 010833 264 ESGWPSKGDSSESDATIDNANTYNSNLIRHVLNNTGTPKHPGIAVSTYIYELYNEDLRPGSVSEKNWGLFNANGVPVYTL 343 (499)
Q Consensus 264 ETGWPS~G~~~~~~As~~na~~y~~~li~~~~s~~GTP~rp~~~~~~yiFelFdE~~K~g~~~E~~wGlf~~dgtpky~l 343 (499)
||||||+|+ .+|+++||+.|++++++|+. .|||+||+..+++||||||||+||+|+++|||||||++||+|||++
T Consensus 234 ETGWPs~G~---~~a~~~nA~~~~~nl~~~~~--~gt~~~~~~~~~~y~F~~FdE~~K~~~~~E~~wGlf~~d~~~ky~~ 308 (310)
T PF00332_consen 234 ETGWPSAGD---PGATPENAQAYNQNLIKHVL--KGTPLRPGNGIDVYIFEAFDENWKPGPEVERHWGLFYPDGTPKYDL 308 (310)
T ss_dssp EE---SSSS---TTCSHHHHHHHHHHHHHHCC--GBBSSSBSS---EEES-SB--TTSSSSGGGGG--SB-TTSSBSS--
T ss_pred ccccccCCC---CCCCcchhHHHHHHHHHHHh--CCCcccCCCCCeEEEEEEecCcCCCCCcccceeeeECCCCCeecCC
Confidence 999999999 68999999999999999997 7999999999999999999999999988999999999999999998
Q ss_pred ee
Q 010833 344 HL 345 (499)
Q Consensus 344 ~~ 345 (499)
+|
T Consensus 309 ~f 310 (310)
T PF00332_consen 309 DF 310 (310)
T ss_dssp --
T ss_pred CC
Confidence 75
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.5e-40 Score=318.91 Aligned_cols=252 Identities=20% Similarity=0.329 Sum_probs=203.3
Q ss_pred cCCceeEEecCCCCCCCC--HHHH---HHHHHhCCCCEEEEccCC----HHHHHHHHhcCCEEEEecCCCccccccccHH
Q 010833 20 KDAFIGVNIGTDLSDMPS--PTQV---VALLKAQNIRHIRLYDAD----RAMLLALANTGIQVTISVPNDQLLGIGQSNA 90 (499)
Q Consensus 20 ~~~~iGvnYg~~~~n~p~--~~~v---v~llk~~~i~~VRlYdad----~~vL~Ala~tgi~V~vgV~n~~~~~ia~~~~ 90 (499)
..++.+|+||++.++..| .+++ +++|++.+ ..||+|.+| ..|++|+...|++|.||||..+..+-+
T Consensus 42 a~g~~~f~l~~~n~dGtCKSa~~~~sDLe~l~~~t-~~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~tdd~~~~---- 116 (305)
T COG5309 42 ASGFLAFTLGPYNDDGTCKSADQVASDLELLASYT-HSIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTDDIHDA---- 116 (305)
T ss_pred cccccceeccccCCCCCCcCHHHHHhHHHHhccCC-ceEEEeeccchhhhhhHHHHHhcCceEEEEEeeccchhhh----
Confidence 446789999999998776 4555 45666654 399999877 579999999999999999987643322
Q ss_pred HHHHHHHHHhcccCCCCcEEEEEeccccccCCCCChHHHHHHHHHHHHHHHhCCCCCceEEecccccccccccCCCCccc
Q 010833 91 TAANWVARHVAAHVPTTNITAIAVGSEVLTVLPNAGPVLVSALKFIHSALVAANLDDQIKVSTPHSSSIILDSFPPSQAF 170 (499)
Q Consensus 91 ~A~~Wv~~~v~~y~p~~~I~~I~VGNEvl~~~~~~~~~Ll~am~nv~~aL~~~gl~~~IkVsT~~s~~vl~~s~pPS~~~ 170 (499)
.+.-+...+.+++.++.|++|.||||+|+++..++.+|+.+|.++|.+|+++|++ .||+|+++|.++.+.
T Consensus 117 -~~~til~ay~~~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~--gpV~T~dsw~~~~~n------- 186 (305)
T COG5309 117 -VEKTILSAYLPYNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYD--GPVTTVDSWNVVINN------- 186 (305)
T ss_pred -HHHHHHHHHhccCCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCC--CceeecccceeeeCC-------
Confidence 2224556788888899999999999999999999999999999999999999997 589999999988762
Q ss_pred ccCCcchhhhhHHHHHHhcCCccccccccccccccCCCCcCcccccccCCCCCCceecCCCccccccHHHHHHHHHHHHH
Q 010833 171 FNRSWDPVMVPLLKFLQSTGSYLMLNVYPYYDYMQSNGVIPLDYALFRPLPPNKEAVDANTLLHYTNVFDAIVDAAYFAM 250 (499)
Q Consensus 171 F~~~~~~~l~~ll~fL~~t~s~~~vN~YPyf~~~~~~~~i~ld~AlF~~~~~~~~~~d~~~~~~Y~n~fDa~~Dav~~am 250 (499)
+. |.+..|++|+|.||||+..... .+. + .++-.|+..++.+.
T Consensus 187 ------p~-------l~~~SDfia~N~~aYwd~~~~a-------------------~~~-----~-~f~~~q~e~vqsa~ 228 (305)
T COG5309 187 ------PE-------LCQASDFIAANAHAYWDGQTVA-------------------NAA-----G-TFLLEQLERVQSAC 228 (305)
T ss_pred ------hH-------Hhhhhhhhhcccchhccccchh-------------------hhh-----h-HHHHHHHHHHHHhc
Confidence 22 4567899999999999986422 011 1 13445577776653
Q ss_pred HhcCCCCccEEEEeeccCCCCCC-CCCCCCHHHHHHHHHHHHHHHHccCCCCCCCCCceeEEEEEeecCCCCCC-C-CCC
Q 010833 251 SDLNFTNIPLVVLESGWPSKGDS-SESDATIDNANTYNSNLIRHVLNNTGTPKHPGIAVSTYIYELYNEDLRPG-S-VSE 327 (499)
Q Consensus 251 ~~~g~~~v~vvVtETGWPS~G~~-~~~~As~~na~~y~~~li~~~~s~~GTP~rp~~~~~~yiFelFdE~~K~g-~-~~E 327 (499)
| .+++++|+||||||+|.. +++.|+++||+.|.+++++.+++ .++++|+||+|||+||.. . .+|
T Consensus 229 ---g-~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~---------~G~d~fvfeAFdd~WK~~~~y~VE 295 (305)
T COG5309 229 ---G-TKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRS---------CGYDVFVFEAFDDDWKADGSYGVE 295 (305)
T ss_pred ---C-CCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhc---------cCccEEEeeeccccccCccccchh
Confidence 2 349999999999999999 46789999999999999998874 369999999999999964 3 689
Q ss_pred cccccccCCC
Q 010833 328 KNWGLFNANG 337 (499)
Q Consensus 328 ~~wGlf~~dg 337 (499)
+|||+++.++
T Consensus 296 kywGv~~s~~ 305 (305)
T COG5309 296 KYWGVLSSDR 305 (305)
T ss_pred hceeeeccCC
Confidence 9999998764
No 3
>smart00768 X8 Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges.
Probab=99.96 E-value=4.1e-29 Score=209.30 Aligned_cols=85 Identities=59% Similarity=1.104 Sum_probs=82.9
Q ss_pred eeEEEcCCCCHHHHHHHhhcccCCCCCCCcccCCCCccCCCCchhhhHhHHHHHHHHHhcCCCCCCCCCCceEEEecCCC
Q 010833 360 TFCVAKDGADKKMLQAALDWACGPGKVDCSALLQGQPCYEPDNVISHSMYAFNAYYQQMAKAPGTCDFKGVATITTTDPS 439 (499)
Q Consensus 360 ~~Cvak~~~~~~~l~~~ld~aCg~~~~dC~~I~~g~~C~~p~t~~~~aSyafN~Yyq~~~~~~~~CdF~G~a~i~~~dps 439 (499)
+|||+|+++++++||++||||||++ +||++|++||.||.|+++++|||||||+|||++++.+++|||+|.|+++++|||
T Consensus 1 ~wCv~~~~~~~~~l~~~~~yaCg~~-~dC~~I~~~g~c~~~~~~~~~aS~a~N~YYq~~~~~~~aC~F~G~a~~~~~~ps 79 (85)
T smart00768 1 LWCVAKPDADEAALQAALDYACGQG-ADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGQSSGACDFGGTATITTTDPS 79 (85)
T ss_pred CccccCCCCCHHHHHHHHHHHhcCC-CCccccCCCCcccCCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCceEEEecCCC
Confidence 5999999999999999999999987 999999999999999999999999999999999999999999999999999999
Q ss_pred CCceee
Q 010833 440 HGSCIF 445 (499)
Q Consensus 440 ~~~C~~ 445 (499)
+++|+|
T Consensus 80 ~~~C~~ 85 (85)
T smart00768 80 TGSCKF 85 (85)
T ss_pred CCccCC
Confidence 999986
No 4
>PF07983 X8: X8 domain; InterPro: IPR012946 The X8 domain [] contains 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen [] as well as at the C terminus of family 17 glycosyl hydrolases []. This domain may be involved in carbohydrate binding.; PDB: 2JON_A 2W61_A 2W62_A 2W63_A.
Probab=99.86 E-value=2e-22 Score=166.18 Aligned_cols=69 Identities=49% Similarity=0.879 Sum_probs=59.6
Q ss_pred eeEEEcCCCCHHHHHHHhhcccCCCCCCCcccCCCCc---------cCCCCchhhhHhHHHHHHHHHhcCCCCCCCCCCc
Q 010833 360 TFCVAKDGADKKMLQAALDWACGPGKVDCSALLQGQP---------CYEPDNVISHSMYAFNAYYQQMAKAPGTCDFKGV 430 (499)
Q Consensus 360 ~~Cvak~~~~~~~l~~~ld~aCg~~~~dC~~I~~g~~---------C~~p~t~~~~aSyafN~Yyq~~~~~~~~CdF~G~ 430 (499)
+|||+|+++++++||++|||||+++++||++|++++. |+ .++|+|||||+|||++++.+.+|||+|+
T Consensus 1 l~Cv~~~~~~~~~l~~~l~~aC~~~~~dC~~I~~~g~~G~YG~~S~C~----~~~~lSya~N~YY~~~~~~~~~C~F~G~ 76 (78)
T PF07983_consen 1 LWCVAKPDADDKELQDLLDYACGQGGVDCSPIQPNGTTGVYGAYSMCS----PRQHLSYAFNQYYQKQGRNSSACDFSGN 76 (78)
T ss_dssp -EEEE-TTS-HHHHHHHHHHHTTT-SSSCCCC-EETTTTEE-TTTTS-----CCHHHHHHHHHHHHHHTSSCCG-SS-ST
T ss_pred CcceeCCCCCHHHHHHHHHHHHcCCCCChhhhCCCCcccccccccCCC----HHHHHHHHHHHHHHHcCCCCCcCCCCCC
Confidence 6999999999999999999999998899999999998 99 7999999999999999999999999999
Q ss_pred eE
Q 010833 431 AT 432 (499)
Q Consensus 431 a~ 432 (499)
||
T Consensus 77 at 78 (78)
T PF07983_consen 77 AT 78 (78)
T ss_dssp EE
T ss_pred CC
Confidence 96
No 5
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=99.75 E-value=1.7e-18 Score=174.78 Aligned_cols=237 Identities=22% Similarity=0.341 Sum_probs=128.0
Q ss_pred eeEEecCCCCC-------CC-C---HHHHHHHHHhCCCCEEEEccCCH-----HHHHHHHhcCCEEEEecCCCccccccc
Q 010833 24 IGVNIGTDLSD-------MP-S---PTQVVALLKAQNIRHIRLYDADR-----AMLLALANTGIQVTISVPNDQLLGIGQ 87 (499)
Q Consensus 24 iGvnYg~~~~n-------~p-~---~~~vv~llk~~~i~~VRlYdad~-----~vL~Ala~tgi~V~vgV~n~~~~~ia~ 87 (499)
.||.|-+.++. .. . -++++.+||++|++.||+|..|| ++|++|++.||.|+++|..+ -.+|.+
T Consensus 30 kGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p-~~sI~r 108 (314)
T PF03198_consen 30 KGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPSKNHDECMSAFADAGIYVILDLNTP-NGSINR 108 (314)
T ss_dssp EEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BT-TBS--T
T ss_pred eeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCC-CccccC
Confidence 69999987762 11 1 25678899999999999999884 79999999999999999877 345544
Q ss_pred cHHHHHHHHHHH-------hcccCCCCcEEEEEeccccccCC--CCChHHHHHHHHHHHHHHHhCCCCCceEEecccccc
Q 010833 88 SNATAANWVARH-------VAAHVPTTNITAIAVGSEVLTVL--PNAGPVLVSALKFIHSALVAANLDDQIKVSTPHSSS 158 (499)
Q Consensus 88 ~~~~A~~Wv~~~-------v~~y~p~~~I~~I~VGNEvl~~~--~~~~~~Ll~am~nv~~aL~~~gl~~~IkVsT~~s~~ 158 (499)
.. -+..|-... |..+-..+|+.++.+||||+... ...++.+..++|++|+.+++.+++. |+|+.+-+.
T Consensus 109 ~~-P~~sw~~~l~~~~~~vid~fa~Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R~-IPVGYsaaD- 185 (314)
T PF03198_consen 109 SD-PAPSWNTDLLDRYFAVIDAFAKYDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYRS-IPVGYSAAD- 185 (314)
T ss_dssp TS-------HHHHHHHHHHHHHHTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EEEEE---
T ss_pred CC-CcCCCCHHHHHHHHHHHHHhccCCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCCC-CceeEEccC-
Confidence 32 234563322 34444568999999999999763 4467899999999999999999975 999987542
Q ss_pred cccccCCCCcccccCCcchhhhhHHHHHHh-----cCCccccccccccccccCCCCcCcccccccCCCCCCceecCCCcc
Q 010833 159 IILDSFPPSQAFFNRSWDPVMVPLLKFLQS-----TGSYLMLNVYPYYDYMQSNGVIPLDYALFRPLPPNKEAVDANTLL 233 (499)
Q Consensus 159 vl~~s~pPS~~~F~~~~~~~l~~ll~fL~~-----t~s~~~vN~YPyf~~~~~~~~i~ld~AlF~~~~~~~~~~d~~~~~ 233 (499)
..+...++.+||.| ..|++++|.| +|+.+. .|+ .+|
T Consensus 186 ----------------~~~~r~~~a~Yl~Cg~~~~~iDf~g~N~Y---~WCg~S--------tf~----~SG-------- 226 (314)
T PF03198_consen 186 ----------------DAEIRQDLANYLNCGDDDERIDFFGLNSY---EWCGDS--------TFE----TSG-------- 226 (314)
T ss_dssp -----------------TTTHHHHHHHTTBTT-----S-EEEEE-------SS----------HH----HHS--------
T ss_pred ----------------ChhHHHHHHHHhcCCCcccccceeeeccc---eecCCC--------ccc----ccc--------
Confidence 22344567889886 4589999999 566533 343 222
Q ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEEeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHccCCCCCCCCCceeEEEE
Q 010833 234 HYTNVFDAIVDAAYFAMSDLNFTNIPLVVLESGWPSKGDSSESDATIDNANTYNSNLIRHVLNNTGTPKHPGIAVSTYIY 313 (499)
Q Consensus 234 ~Y~n~fDa~~Dav~~am~~~g~~~v~vvVtETGWPS~G~~~~~~As~~na~~y~~~li~~~~s~~GTP~rp~~~~~~yiF 313 (499)
|..+. ...+ + ..|||+++|.|+-+.. .|+|.+ +..+.+..+|....| ..+|
T Consensus 227 -y~~l~--------~~f~--~-y~vPvffSEyGCn~~~-----------pR~f~e--v~aly~~~Mt~v~SG----GivY 277 (314)
T PF03198_consen 227 -YDRLT--------KEFS--N-YSVPVFFSEYGCNTVT-----------PRTFTE--VPALYSPEMTDVWSG----GIVY 277 (314)
T ss_dssp -HHHHH--------HHHT--T--SS-EEEEEE---SSS-----------S---TH--HHHHTSHHHHTTEEE----EEES
T ss_pred -HHHHH--------HHhh--C-CCCCeEEcccCCCCCC-----------CccchH--hHHhhCccchhheec----eEEE
Confidence 33222 1222 3 3799999999998544 244433 444433333333223 5689
Q ss_pred EeecCCCCCCCCCCcccccccCCCCce
Q 010833 314 ELYNEDLRPGSVSEKNWGLFNANGVPV 340 (499)
Q Consensus 314 elFdE~~K~g~~~E~~wGlf~~dgtpk 340 (499)
|.|.| +.+|||...++...
T Consensus 278 Ey~~e--------~n~yGlV~~~~~~~ 296 (314)
T PF03198_consen 278 EYFQE--------ANNYGLVEISGDGS 296 (314)
T ss_dssp -SB----------SSS--SEEE-TTS-
T ss_pred EEecc--------CCceEEEEEcCCCC
Confidence 99887 46899998766543
No 6
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=98.98 E-value=7.2e-08 Score=99.90 Aligned_cols=242 Identities=19% Similarity=0.241 Sum_probs=125.4
Q ss_pred HHHHHHHHHhCCCCEEEE--cc-------CC-H---HHHHHHHhcCCEEEEecCCCc---------c-ccccc-cHH---
Q 010833 38 PTQVVALLKAQNIRHIRL--YD-------AD-R---AMLLALANTGIQVTISVPNDQ---------L-LGIGQ-SNA--- 90 (499)
Q Consensus 38 ~~~vv~llk~~~i~~VRl--Yd-------ad-~---~vL~Ala~tgi~V~vgV~n~~---------~-~~ia~-~~~--- 90 (499)
.++++++||..|++.||| |. .| . .+.+.+++.|++|+|..--+| + .+... +.+
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~ 105 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLA 105 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHH
T ss_pred CCCHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHH
Confidence 477899999999986655 42 11 1 345566789999999987653 1 11111 222
Q ss_pred -HHHHHHHHHhcccC-CCCcEEEEEeccccccC------CCCChHHHHHHHHHHHHHHHhCCCCCceEEecccccccccc
Q 010833 91 -TAANWVARHVAAHV-PTTNITAIAVGSEVLTV------LPNAGPVLVSALKFIHSALVAANLDDQIKVSTPHSSSIILD 162 (499)
Q Consensus 91 -~A~~Wv~~~v~~y~-p~~~I~~I~VGNEvl~~------~~~~~~~Ll~am~nv~~aL~~~gl~~~IkVsT~~s~~vl~~ 162 (499)
+...+.++-+...- -.+.+..|-||||+-.. .....+.+...++.-.+++++..- ++||-.-.. +
T Consensus 106 ~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p--~~kV~lH~~-----~ 178 (332)
T PF07745_consen 106 KAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDP--NIKVMLHLA-----N 178 (332)
T ss_dssp HHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSS--TSEEEEEES------
T ss_pred HHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEC-----C
Confidence 22233332222221 25778899999998653 234466777777778888877443 355543221 1
Q ss_pred cCCCCcccccCCcchhhhhHHHHHHhc---CCccccccccccccccCCCCcCcccccccCCCCCCceecCCCccccccHH
Q 010833 163 SFPPSQAFFNRSWDPVMVPLLKFLQST---GSYLMLNVYPYYDYMQSNGVIPLDYALFRPLPPNKEAVDANTLLHYTNVF 239 (499)
Q Consensus 163 s~pPS~~~F~~~~~~~l~~ll~fL~~t---~s~~~vN~YPyf~~~~~~~~i~ld~AlF~~~~~~~~~~d~~~~~~Y~n~f 239 (499)
| +-...++-..+.|... =|.++++.||||...- + -+
T Consensus 179 --~--------~~~~~~~~~f~~l~~~g~d~DviGlSyYP~w~~~l-------~------------------------~l 217 (332)
T PF07745_consen 179 --G--------GDNDLYRWFFDNLKAAGVDFDVIGLSYYPFWHGTL-------E------------------------DL 217 (332)
T ss_dssp --T--------TSHHHHHHHHHHHHHTTGG-SEEEEEE-STTST-H-------H------------------------HH
T ss_pred --C--------CchHHHHHHHHHHHhcCCCcceEEEecCCCCcchH-------H------------------------HH
Confidence 0 0012233344444443 3889999999998611 0 11
Q ss_pred HHHHHHHHHHHHhcCCCCccEEEEeeccCCCCCC-----C---------CCCCCHHHHHHHHHHHHHHHHccCCCCCCCC
Q 010833 240 DAIVDAAYFAMSDLNFTNIPLVVLESGWPSKGDS-----S---------ESDATIDNANTYNSNLIRHVLNNTGTPKHPG 305 (499)
Q Consensus 240 Da~~Dav~~am~~~g~~~v~vvVtETGWPS~G~~-----~---------~~~As~~na~~y~~~li~~~~s~~GTP~rp~ 305 (499)
...++.+ .++. +++|+|.|||||..-+. + +..+|++.|+.|++.+++.+.+-.+ +
T Consensus 218 ~~~l~~l---~~ry---~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~p~-----~ 286 (332)
T PF07745_consen 218 KNNLNDL---ASRY---GKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNVPN-----G 286 (332)
T ss_dssp HHHHHHH---HHHH---T-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS-------T
T ss_pred HHHHHHH---HHHh---CCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHhcc-----C
Confidence 2222222 2232 68999999999997211 1 1236999999999999999875211 2
Q ss_pred CceeEEEEEeecCCCC---------CCCCCCcccccccCCCCceee
Q 010833 306 IAVSTYIYELYNEDLR---------PGSVSEKNWGLFNANGVPVYT 342 (499)
Q Consensus 306 ~~~~~yiFelFdE~~K---------~g~~~E~~wGlf~~dgtpky~ 342 (499)
.++-+|+-|- .|- .|...|.. +||+.+|++--.
T Consensus 287 ~g~GvfYWeP---~w~~~~~~~~~~~g~~w~n~-~lFD~~g~~l~s 328 (332)
T PF07745_consen 287 GGLGVFYWEP---AWIPVENGWDWGGGSSWDNQ-ALFDFNGNALPS 328 (332)
T ss_dssp TEEEEEEE-T---T-GGGTTHHHHTTTSSSSBG-SSB-TTSBB-GG
T ss_pred CeEEEEeecc---ccccCCcccccCCCCCcccc-ccCCCCCCCchH
Confidence 3566666552 233 23233433 899988876433
No 7
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.49 E-value=2e-06 Score=86.65 Aligned_cols=252 Identities=19% Similarity=0.254 Sum_probs=138.2
Q ss_pred HHHHHHHHHhCCCCEEEE--c----cCC--------H------HHHHHHHhcCCEEEEecCCCccccccccHHHHHHHHH
Q 010833 38 PTQVVALLKAQNIRHIRL--Y----DAD--------R------AMLLALANTGIQVTISVPNDQLLGIGQSNATAANWVA 97 (499)
Q Consensus 38 ~~~vv~llk~~~i~~VRl--Y----dad--------~------~vL~Ala~tgi~V~vgV~n~~~~~ia~~~~~A~~Wv~ 97 (499)
.++.++.||..||+.||| | |.| . ++-+-+++.|+||++..--+|-=+--.-+..-..|..
T Consensus 65 ~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~kPkaW~~ 144 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQKKPKAWEN 144 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhccChhhcCCcHHhhh
Confidence 567889999999986655 4 444 1 3444456899999999876541100000111123422
Q ss_pred -------HHhccc--------C-CCCcEEEEEeccccccC-----C-CCChHHHHHHHHHHHHHHHhCCCCCceEEeccc
Q 010833 98 -------RHVAAH--------V-PTTNITAIAVGSEVLTV-----L-PNAGPVLVSALKFIHSALVAANLDDQIKVSTPH 155 (499)
Q Consensus 98 -------~~v~~y--------~-p~~~I~~I~VGNEvl~~-----~-~~~~~~Ll~am~nv~~aL~~~gl~~~IkVsT~~ 155 (499)
+.|-.| . -...+..+-||||.-.. . ......+...++.-..+++.. +..|||---.
T Consensus 145 l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev--~p~ikv~lHl 222 (403)
T COG3867 145 LNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREV--SPTIKVALHL 222 (403)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhc--CCCceEEEEe
Confidence 222122 1 14677889999998653 1 224556666666666666653 3357765432
Q ss_pred ccccccccCCCCcccccCCcchhhhhHHHHHHhcC---CccccccccccccccCCCCcCcccccccCCCCCCceecCCCc
Q 010833 156 SSSIILDSFPPSQAFFNRSWDPVMVPLLKFLQSTG---SYLMLNVYPYYDYMQSNGVIPLDYALFRPLPPNKEAVDANTL 232 (499)
Q Consensus 156 s~~vl~~s~pPS~~~F~~~~~~~l~~ll~fL~~t~---s~~~vN~YPyf~~~~~~~~i~ld~AlF~~~~~~~~~~d~~~~ 232 (499)
+ +.-. .+.|| -+.+-|.+.+ |.|.+--||||...-+.
T Consensus 223 a-----~g~~--n~~y~--------~~fd~ltk~nvdfDVig~SyYpyWhgtl~n------------------------- 262 (403)
T COG3867 223 A-----EGEN--NSLYR--------WIFDELTKRNVDFDVIGSSYYPYWHGTLNN------------------------- 262 (403)
T ss_pred c-----CCCC--Cchhh--------HHHHHHHHcCCCceEEeeeccccccCcHHH-------------------------
Confidence 2 2111 12222 2333444433 77899999999984321
Q ss_pred cccccHHHHHHHHHHHHHHhcCCCCccEEEEeecc--------------CCCCCCCCCCCCHHHHHHHHHHHHHHHHccC
Q 010833 233 LHYTNVFDAIVDAAYFAMSDLNFTNIPLVVLESGW--------------PSKGDSSESDATIDNANTYNSNLIRHVLNNT 298 (499)
Q Consensus 233 ~~Y~n~fDa~~Dav~~am~~~g~~~v~vvVtETGW--------------PS~G~~~~~~As~~na~~y~~~li~~~~s~~ 298 (499)
-++.++.+-+ -.++.|+|.||+. |+.+...+...+++.+++|.+++|+.+.+--
T Consensus 263 --L~~nl~dia~----------rY~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~nvp 330 (403)
T COG3867 263 --LTTNLNDIAS----------RYHKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKNVP 330 (403)
T ss_pred --HHhHHHHHHH----------HhcCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHhCC
Confidence 1112232222 1478999999987 5544333345788999999999999886421
Q ss_pred -------------CCCCCCCCceeE-EEEEeecCCCCCCCCCCcccccccCCCCceeeee
Q 010833 299 -------------GTPKHPGIAVST-YIYELYNEDLRPGSVSEKNWGLFNANGVPVYTLH 344 (499)
Q Consensus 299 -------------GTP~rp~~~~~~-yiFelFdE~~K~g~~~E~~wGlf~~dgtpky~l~ 344 (499)
..|.++|.+..+ |--+.-+|+|+.|...+. --||+.+|.|--.|+
T Consensus 331 ~~~GlGvFYWEp~wipv~~g~gwat~~~~~y~~e~w~~gsavdN-qaLfdf~G~~LPSl~ 389 (403)
T COG3867 331 KSNGLGVFYWEPAWIPVVLGSGWATSYAAKYDPENWGEGSAVDN-QALFDFNGHPLPSLN 389 (403)
T ss_pred CCCceEEEEecccceeccCCCccccchhhccCcccccCCCccch-hhhhhccCCcCcchh
Confidence 113333333222 112233455665543332 357777777655543
No 8
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.17 E-value=0.00041 Score=77.64 Aligned_cols=242 Identities=13% Similarity=0.102 Sum_probs=137.9
Q ss_pred HHHHHHHHhCCCCEEEEcc--CCHHHHHHHHhcCCEEEEecCCCc---------------ccccc------ccHHHHHHH
Q 010833 39 TQVVALLKAQNIRHIRLYD--ADRAMLLALANTGIQVTISVPNDQ---------------LLGIG------QSNATAANW 95 (499)
Q Consensus 39 ~~vv~llk~~~i~~VRlYd--ad~~vL~Ala~tgi~V~vgV~n~~---------------~~~ia------~~~~~A~~W 95 (499)
.+++++||+.|++.||+-. .++..+.++-..||-|+.=+|... .+... .......+-
T Consensus 316 ~~d~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (604)
T PRK10150 316 VHDHNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQA 395 (604)
T ss_pred HHHHHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEecccccccccccccccccccccccccccccchhHHHHHHHH
Confidence 4567889999999999943 357899999999999997664311 00111 011222333
Q ss_pred HHHHhcccCCCCcEEEEEeccccccCCCCChHHHHHHHHHHHHHHHhCCCCCceEEecccccccccccCCCCcccccCCc
Q 010833 96 VARHVAAHVPTTNITAIAVGSEVLTVLPNAGPVLVSALKFIHSALVAANLDDQIKVSTPHSSSIILDSFPPSQAFFNRSW 175 (499)
Q Consensus 96 v~~~v~~y~p~~~I~~I~VGNEvl~~~~~~~~~Ll~am~nv~~aL~~~gl~~~IkVsT~~s~~vl~~s~pPS~~~F~~~~ 175 (499)
+++.|.++.....|..-.+|||.-.. .+.....++.+.+.+++..-++ +|+.+..+. . +|.. +
T Consensus 396 ~~~mv~r~~NHPSIi~Ws~gNE~~~~----~~~~~~~~~~l~~~~k~~DptR--~vt~~~~~~---~--~~~~-----~- 458 (604)
T PRK10150 396 IRELIARDKNHPSVVMWSIANEPASR----EQGAREYFAPLAELTRKLDPTR--PVTCVNVMF---A--TPDT-----D- 458 (604)
T ss_pred HHHHHHhccCCceEEEEeeccCCCcc----chhHHHHHHHHHHHHHhhCCCC--ceEEEeccc---C--Cccc-----c-
Confidence 66677777777789999999997432 1233345566666666644333 456553211 0 1100 0
Q ss_pred chhhhhHHHHHHhcCCccccccccccccccCCCCcCcccccccCCCCCCceecCCCccccccHHHHHHHHHHHHHHhcCC
Q 010833 176 DPVMVPLLKFLQSTGSYLMLNVYPYYDYMQSNGVIPLDYALFRPLPPNKEAVDANTLLHYTNVFDAIVDAAYFAMSDLNF 255 (499)
Q Consensus 176 ~~~l~~ll~fL~~t~s~~~vN~YPyf~~~~~~~~i~ld~AlF~~~~~~~~~~d~~~~~~Y~n~fDa~~Dav~~am~~~g~ 255 (499)
-+....|++..|.|+=|-. +.+ +.+. ....++..++.. .++ +
T Consensus 459 ---------~~~~~~Dv~~~N~Y~~wy~--~~~----~~~~------------------~~~~~~~~~~~~---~~~--~ 500 (604)
T PRK10150 459 ---------TVSDLVDVLCLNRYYGWYV--DSG----DLET------------------AEKVLEKELLAW---QEK--L 500 (604)
T ss_pred ---------cccCcccEEEEcccceecC--CCC----CHHH------------------HHHHHHHHHHHH---HHh--c
Confidence 0122457889998752211 110 0000 111223233221 111 2
Q ss_pred CCccEEEEeeccCCCCC---CCCCCCCHHHHHHHHHHHHHHHHccCCCCCCCCCceeEEEEEeecCCCCCCC--CCCccc
Q 010833 256 TNIPLVVLESGWPSKGD---SSESDATIDNANTYNSNLIRHVLNNTGTPKHPGIAVSTYIYELYNEDLRPGS--VSEKNW 330 (499)
Q Consensus 256 ~~v~vvVtETGWPS~G~---~~~~~As~~na~~y~~~li~~~~s~~GTP~rp~~~~~~yiFelFdE~~K~g~--~~E~~w 330 (499)
++|++++|.|+.+.-+ .....-+.+.+..|++...+.+.. +|. -+-.||..+||-....|. ....+.
T Consensus 501 -~kP~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~~------~p~-~~G~~iW~~~D~~~~~g~~~~~g~~~ 572 (604)
T PRK10150 501 -HKPIIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFDR------VPA-VVGEQVWNFADFATSQGILRVGGNKK 572 (604)
T ss_pred -CCCEEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHHHhc------CCc-eEEEEEEeeeccCCCCCCcccCCCcc
Confidence 8999999999755211 111124678888888876665543 343 456789999995544331 123477
Q ss_pred ccccCCCCceeee
Q 010833 331 GLFNANGVPVYTL 343 (499)
Q Consensus 331 Glf~~dgtpky~l 343 (499)
||++.||+||-..
T Consensus 573 Gl~~~dr~~k~~~ 585 (604)
T PRK10150 573 GIFTRDRQPKSAA 585 (604)
T ss_pred eeEcCCCCChHHH
Confidence 9999999998543
No 9
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.02 E-value=0.00036 Score=69.07 Aligned_cols=128 Identities=18% Similarity=0.086 Sum_probs=84.6
Q ss_pred ceeEEecCCCCCCCCHHHHHHHHHhCCCCEEEEccC-------------C-------HHHHHHHHhcCCEEEEecCCC-c
Q 010833 23 FIGVNIGTDLSDMPSPTQVVALLKAQNIRHIRLYDA-------------D-------RAMLLALANTGIQVTISVPND-Q 81 (499)
Q Consensus 23 ~iGvnYg~~~~n~p~~~~vv~llk~~~i~~VRlYda-------------d-------~~vL~Ala~tgi~V~vgV~n~-~ 81 (499)
..|+|-. ..+.. ..+++++.+++.|++.|||.-. + ..+|+++++.||+|+|.+... .
T Consensus 10 ~~G~n~~-w~~~~-~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~~ 87 (281)
T PF00150_consen 10 WRGFNTH-WYNPS-ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAPG 87 (281)
T ss_dssp EEEEEET-TSGGG-SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEESTT
T ss_pred eeeeecc-cCCCC-CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence 3566665 22222 7789999999999999999721 1 257888999999999998874 0
Q ss_pred ---cccccccHHHHHHHHHH---HhcccC-CCCcEEEEEeccccccCCCC-C-----hHHHHHHHHHHHHHHHhCCCCCc
Q 010833 82 ---LLGIGQSNATAANWVAR---HVAAHV-PTTNITAIAVGSEVLTVLPN-A-----GPVLVSALKFIHSALVAANLDDQ 148 (499)
Q Consensus 82 ---~~~ia~~~~~A~~Wv~~---~v~~y~-p~~~I~~I~VGNEvl~~~~~-~-----~~~Ll~am~nv~~aL~~~gl~~~ 148 (499)
.............|+++ .|...| ....|.++=+.||+...... . ...+.+.++.+.+++++.+-+..
T Consensus 88 w~~~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~ 167 (281)
T PF00150_consen 88 WANGGDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNHL 167 (281)
T ss_dssp CSSSTSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSSE
T ss_pred ccccccccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcce
Confidence 11111222334444333 344444 44568899999999875332 2 26788999999999999987654
Q ss_pred eEEe
Q 010833 149 IKVS 152 (499)
Q Consensus 149 IkVs 152 (499)
|-|+
T Consensus 168 i~~~ 171 (281)
T PF00150_consen 168 IIVG 171 (281)
T ss_dssp EEEE
T ss_pred eecC
Confidence 4333
No 10
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.21 E-value=0.03 Score=55.99 Aligned_cols=79 Identities=13% Similarity=0.138 Sum_probs=52.6
Q ss_pred HHHHHHhcCCCCccEEEEeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHccCCCCCCCCCceeEEEEEeecC-CCCCCC
Q 010833 246 AYFAMSDLNFTNIPLVVLESGWPSKGDSSESDATIDNANTYNSNLIRHVLNNTGTPKHPGIAVSTYIYELYNE-DLRPGS 324 (499)
Q Consensus 246 v~~am~~~g~~~v~vvVtETGWPS~G~~~~~~As~~na~~y~~~li~~~~s~~GTP~rp~~~~~~yiFelFdE-~~K~g~ 324 (499)
+...|++++-.++||.|||.+-|..+ +.+.++.|++.+++.+.+. |. ...+++..+.|. .|.++
T Consensus 171 ~~~~l~~~~~~g~pi~iTE~dv~~~~-------~~~~qA~~~~~~l~~~~~~------p~-v~gi~~Wg~~d~~~W~~~- 235 (254)
T smart00633 171 IRAALDRFASLGLEIQITELDISGYP-------NPQAQAADYEEVFKACLAH------PA-VTGVTVWGVTDKYSWLDG- 235 (254)
T ss_pred HHHHHHHHHHcCCceEEEEeecCCCC-------cHHHHHHHHHHHHHHHHcC------CC-eeEEEEeCCccCCcccCC-
Confidence 33444444445889999999988643 3378888999999988763 22 233445555553 35543
Q ss_pred CCCcccccccCCCCceee
Q 010833 325 VSEKNWGLFNANGVPVYT 342 (499)
Q Consensus 325 ~~E~~wGlf~~dgtpky~ 342 (499)
.+-|||+.|++||-.
T Consensus 236 ---~~~~L~d~~~~~kpa 250 (254)
T smart00633 236 ---GAPLLFDANYQPKPA 250 (254)
T ss_pred ---CCceeECCCCCCChh
Confidence 467999999988743
No 11
>TIGR03356 BGL beta-galactosidase.
Probab=96.34 E-value=0.36 Score=52.19 Aligned_cols=80 Identities=20% Similarity=0.222 Sum_probs=50.3
Q ss_pred HHHHHHHHHhCCCCEEEEc--------c----CC-------HHHHHHHHhcCCEEEEecCCCcccc-cc-----ccHHHH
Q 010833 38 PTQVVALLKAQNIRHIRLY--------D----AD-------RAMLLALANTGIQVTISVPNDQLLG-IG-----QSNATA 92 (499)
Q Consensus 38 ~~~vv~llk~~~i~~VRlY--------d----ad-------~~vL~Ala~tgi~V~vgV~n~~~~~-ia-----~~~~~A 92 (499)
-++++++|+++|++++|+= + .| .+++..+.+.||+++|.+.--+++. +. .++...
T Consensus 56 y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~gGw~~~~~~ 135 (427)
T TIGR03356 56 YEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDRGGWLNRDTA 135 (427)
T ss_pred HHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhcCCCCChHHH
Confidence 5789999999999999973 1 12 2689999999999999995443332 11 112211
Q ss_pred ---HHHHHHHhcccCCCCcEEEEEeccccc
Q 010833 93 ---ANWVARHVAAHVPTTNITAIAVGSEVL 119 (499)
Q Consensus 93 ---~~Wv~~~v~~y~p~~~I~~I~VGNEvl 119 (499)
.+..+ .+...+.+ .|+..+.=||+.
T Consensus 136 ~~f~~ya~-~~~~~~~d-~v~~w~t~NEp~ 163 (427)
T TIGR03356 136 EWFAEYAA-VVAERLGD-RVKHWITLNEPW 163 (427)
T ss_pred HHHHHHHH-HHHHHhCC-cCCEEEEecCcc
Confidence 12222 23333443 677777778875
No 12
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=96.11 E-value=0.49 Score=47.05 Aligned_cols=190 Identities=13% Similarity=0.073 Sum_probs=103.0
Q ss_pred CEEEEecCCCccccccccHHHHHHHHHHHhcccCCCCcEEEEEeccccccCC--CCChHHHHHHHHHHHHHHHhCCCCCc
Q 010833 71 IQVTISVPNDQLLGIGQSNATAANWVARHVAAHVPTTNITAIAVGSEVLTVL--PNAGPVLVSALKFIHSALVAANLDDQ 148 (499)
Q Consensus 71 i~V~vgV~n~~~~~ia~~~~~A~~Wv~~~v~~y~p~~~I~~I~VGNEvl~~~--~~~~~~Ll~am~nv~~aL~~~gl~~~ 148 (499)
++-+-.+|...... ..|++ +|... ...++.|..=||+=... ..++++.+...+.+.+.|+. ..
T Consensus 39 ~efvPmlwg~~~~~--------~~~~~-~v~~~--~~~~~~ll~fNEPD~~~qsn~~p~~aa~~w~~~~~~~~~----~~ 103 (239)
T PF11790_consen 39 LEFVPMLWGPGSDD--------DDWLA-NVQNA--HPGSKHLLGFNEPDLPGQSNMSPEEAAALWKQYMNPLRS----PG 103 (239)
T ss_pred eeEeecccCCCCCc--------hHHHH-HHHhh--ccCccceeeecCCCCCCCCCCCHHHHHHHHHHHHhHhhc----CC
Confidence 77777778664322 12333 23322 35788999999986543 33455667777776666663 34
Q ss_pred eEEecccccccccccCCCCcccccCCcchhhhhHHHHHH--hcCCccccccccccccccCCCCcCcccccccCCCCCCce
Q 010833 149 IKVSTPHSSSIILDSFPPSQAFFNRSWDPVMVPLLKFLQ--STGSYLMLNVYPYYDYMQSNGVIPLDYALFRPLPPNKEA 226 (499)
Q Consensus 149 IkVsT~~s~~vl~~s~pPS~~~F~~~~~~~l~~ll~fL~--~t~s~~~vN~YPyf~~~~~~~~i~ld~AlF~~~~~~~~~ 226 (499)
+|+..|.-...-.. +| +-.+-|...++-.. +..|++.||.| ..
T Consensus 104 ~~l~sPa~~~~~~~--~~-------~g~~Wl~~F~~~~~~~~~~D~iavH~Y-----~~--------------------- 148 (239)
T PF11790_consen 104 VKLGSPAVAFTNGG--TP-------GGLDWLSQFLSACARGCRVDFIAVHWY-----GG--------------------- 148 (239)
T ss_pred cEEECCeecccCCC--CC-------CccHHHHHHHHhcccCCCccEEEEecC-----Cc---------------------
Confidence 78887644111000 01 11122332222221 24466666665 10
Q ss_pred ecCCCccccccHHHHHHHHHHHHHHhcCCCCccEEEEeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHccCCCCCCCCC
Q 010833 227 VDANTLLHYTNVFDAIVDAAYFAMSDLNFTNIPLVVLESGWPSKGDSSESDATIDNANTYNSNLIRHVLNNTGTPKHPGI 306 (499)
Q Consensus 227 ~d~~~~~~Y~n~fDa~~Dav~~am~~~g~~~v~vvVtETGWPS~G~~~~~~As~~na~~y~~~li~~~~s~~GTP~rp~~ 306 (499)
+ ++...+.+....++.| +||+|||.|+...+ ...+.+.++.|.+..+..+.+. |.
T Consensus 149 ----------~-~~~~~~~i~~~~~~~~---kPIWITEf~~~~~~----~~~~~~~~~~fl~~~~~~ld~~------~~- 203 (239)
T PF11790_consen 149 ----------D-ADDFKDYIDDLHNRYG---KPIWITEFGCWNGG----SQGSDEQQASFLRQALPWLDSQ------PY- 203 (239)
T ss_pred ----------C-HHHHHHHHHHHHHHhC---CCEEEEeecccCCC----CCCCHHHHHHHHHHHHHHHhcC------CC-
Confidence 0 1122222223333433 89999999987622 3578899999999999988642 22
Q ss_pred ceeEEEEEeecCCCCCCCCCCcccccccCCCCc
Q 010833 307 AVSTYIYELYNEDLRPGSVSEKNWGLFNANGVP 339 (499)
Q Consensus 307 ~~~~yiFelFdE~~K~g~~~E~~wGlf~~dgtp 339 (499)
--.+++|. |..+.. ....+-.|++.+|++
T Consensus 204 VeryawF~-~~~~~~---~~~~~~~L~~~~G~l 232 (239)
T PF11790_consen 204 VERYAWFG-FMNDGS---GVNPNSALLDADGSL 232 (239)
T ss_pred eeEEEecc-cccccC---CCccccccccCCCCc
Confidence 23445677 322222 345566777777754
No 13
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=95.39 E-value=0.27 Score=50.03 Aligned_cols=121 Identities=17% Similarity=0.134 Sum_probs=71.3
Q ss_pred ceeEEecCCCCC---CCCH---HHHHHHHHhCCCCEEEEcc--CCHHHHHHHHhcCCEEEEecCCCcc---ccc------
Q 010833 23 FIGVNIGTDLSD---MPSP---TQVVALLKAQNIRHIRLYD--ADRAMLLALANTGIQVTISVPNDQL---LGI------ 85 (499)
Q Consensus 23 ~iGvnYg~~~~n---~p~~---~~vv~llk~~~i~~VRlYd--ad~~vL~Ala~tgi~V~vgV~n~~~---~~i------ 85 (499)
.-|||+...... ..+. .++++++|+.|++.||+.. .++..+.++-..||-|+..++.... ...
T Consensus 17 l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~ 96 (298)
T PF02836_consen 17 LRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNYD 96 (298)
T ss_dssp EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSCT
T ss_pred EEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccccccCccccCCccccC
Confidence 359998875432 1233 4457789999999999964 3479999999999999988876211 111
Q ss_pred ccc---HHHHHHHHHHHhcccCCCCcEEEEEeccccccCCCCChHHHHHHHHHHHHHHHhCCCCCceEEecc
Q 010833 86 GQS---NATAANWVARHVAAHVPTTNITAIAVGSEVLTVLPNAGPVLVSALKFIHSALVAANLDDQIKVSTP 154 (499)
Q Consensus 86 a~~---~~~A~~Wv~~~v~~y~p~~~I~~I~VGNEvl~~~~~~~~~Ll~am~nv~~aL~~~gl~~~IkVsT~ 154 (499)
..+ .+.+.+.+++.|.+++....|..=.+|||. .....++.+.+.+++.-=++ +|+..
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~---------~~~~~~~~l~~~~k~~DptR--pv~~~ 157 (298)
T PF02836_consen 97 ADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES---------DYREFLKELYDLVKKLDPTR--PVTYA 157 (298)
T ss_dssp TTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS---------HHHHHHHHHHHHHHHH-TTS--EEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC---------ccccchhHHHHHHHhcCCCC--ceeec
Confidence 111 233445667778777767789999999999 23333455555555433333 45544
No 14
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=94.80 E-value=0.2 Score=54.51 Aligned_cols=117 Identities=19% Similarity=0.165 Sum_probs=67.3
Q ss_pred HHHHHHHHHhCCCCEEEEc--------c-----CC-------HHHHHHHHhcCCEEEEecCCCccccccc------cHHH
Q 010833 38 PTQVVALLKAQNIRHIRLY--------D-----AD-------RAMLLALANTGIQVTISVPNDQLLGIGQ------SNAT 91 (499)
Q Consensus 38 ~~~vv~llk~~~i~~VRlY--------d-----ad-------~~vL~Ala~tgi~V~vgV~n~~~~~ia~------~~~~ 91 (499)
.++++++||++|++..|+- + .| .+++..|...||+.+|.+.--+++..-. +...
T Consensus 60 y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~~ggw~~~~~ 139 (455)
T PF00232_consen 60 YKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLEDYGGWLNRET 139 (455)
T ss_dssp HHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHHHTGGGSTHH
T ss_pred hhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceeecccccCHHH
Confidence 5899999999999999975 1 12 2689999999999999997655543211 1111
Q ss_pred HHHHHHHH---hcccCCCCcEEEEEeccccccC-------C---CC--C-------hHHHHHHHHHHHHHHHhCCCCCce
Q 010833 92 AANWVARH---VAAHVPTTNITAIAVGSEVLTV-------L---PN--A-------GPVLVSALKFIHSALVAANLDDQI 149 (499)
Q Consensus 92 A~~Wv~~~---v~~y~p~~~I~~I~VGNEvl~~-------~---~~--~-------~~~Ll~am~nv~~aL~~~gl~~~I 149 (499)
..|..+- +...+ ...|+.-+.=||+..- . +. . ...++-|-....+++++.+- +.
T Consensus 140 -~~~F~~Ya~~~~~~~-gd~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~~~--~~ 215 (455)
T PF00232_consen 140 -VDWFARYAEFVFERF-GDRVKYWITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEKYP--DG 215 (455)
T ss_dssp -HHHHHHHHHHHHHHH-TTTBSEEEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTC--TS
T ss_pred -HHHHHHHHHHHHHHh-CCCcceEEeccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhhccc--ce
Confidence 2222221 22222 3578888888998741 0 11 1 11344455555566666553 35
Q ss_pred EEecccccc
Q 010833 150 KVSTPHSSS 158 (499)
Q Consensus 150 kVsT~~s~~ 158 (499)
||+..++..
T Consensus 216 ~IGi~~~~~ 224 (455)
T PF00232_consen 216 KIGIALNFS 224 (455)
T ss_dssp EEEEEEEEE
T ss_pred EEecccccc
Confidence 677766654
No 15
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=93.72 E-value=1.8 Score=51.86 Aligned_cols=97 Identities=19% Similarity=0.193 Sum_probs=62.9
Q ss_pred eeEEecCCCCC---CCCH---HHHHHHHHhCCCCEEEEcc--CCHHHHHHHHhcCCEEEEecCCCc--------cccccc
Q 010833 24 IGVNIGTDLSD---MPSP---TQVVALLKAQNIRHIRLYD--ADRAMLLALANTGIQVTISVPNDQ--------LLGIGQ 87 (499)
Q Consensus 24 iGvnYg~~~~n---~p~~---~~vv~llk~~~i~~VRlYd--ad~~vL~Ala~tgi~V~vgV~n~~--------~~~ia~ 87 (499)
-|+|+-..... ..++ .++++++|+.|++.||+.. .++..+.++-..||-|+--++.+. ...+..
T Consensus 337 rGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~~ 416 (1021)
T PRK10340 337 HGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRITD 416 (1021)
T ss_pred EEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECCcccccCcccccccccccC
Confidence 48886543221 1233 4567789999999999863 336889999999999998653221 011222
Q ss_pred cH---HHHHHHHHHHhcccCCCCcEEEEEecccccc
Q 010833 88 SN---ATAANWVARHVAAHVPTTNITAIAVGSEVLT 120 (499)
Q Consensus 88 ~~---~~A~~Wv~~~v~~y~p~~~I~~I~VGNEvl~ 120 (499)
++ .+..+-+++.|.++.....|..-.+|||.-.
T Consensus 417 ~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~~ 452 (1021)
T PRK10340 417 DPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESGY 452 (1021)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccc
Confidence 22 2223446667777766778888999999743
No 16
>PLN02998 beta-glucosidase
Probab=93.45 E-value=3.5 Score=45.62 Aligned_cols=47 Identities=17% Similarity=0.232 Sum_probs=37.3
Q ss_pred HHHHHHHHHhCCCCEEEEc--------c----CC-------HHHHHHHHhcCCEEEEecCCCcccc
Q 010833 38 PTQVVALLKAQNIRHIRLY--------D----AD-------RAMLLALANTGIQVTISVPNDQLLG 84 (499)
Q Consensus 38 ~~~vv~llk~~~i~~VRlY--------d----ad-------~~vL~Ala~tgi~V~vgV~n~~~~~ 84 (499)
-+++++++|++|++.-|+= + .| .+++.+|.+.||+-+|.+.--+++.
T Consensus 84 y~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~ 149 (497)
T PLN02998 84 YKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQ 149 (497)
T ss_pred hHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCH
Confidence 4789999999999888763 1 23 3689999999999999998665543
No 17
>PLN02814 beta-glucosidase
Probab=92.43 E-value=11 Score=41.75 Aligned_cols=47 Identities=15% Similarity=0.288 Sum_probs=37.3
Q ss_pred HHHHHHHHHhCCCCEEEEc--------c----CC-------HHHHHHHHhcCCEEEEecCCCcccc
Q 010833 38 PTQVVALLKAQNIRHIRLY--------D----AD-------RAMLLALANTGIQVTISVPNDQLLG 84 (499)
Q Consensus 38 ~~~vv~llk~~~i~~VRlY--------d----ad-------~~vL~Ala~tgi~V~vgV~n~~~~~ 84 (499)
-++++++||++|++.-|+= + .| .+++.++.+.||+-+|.+.--+++.
T Consensus 79 y~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~ 144 (504)
T PLN02814 79 YKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQ 144 (504)
T ss_pred hHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCH
Confidence 5889999999999887753 1 23 3689999999999999998666554
No 18
>PLN02849 beta-glucosidase
Probab=90.35 E-value=31 Score=38.32 Aligned_cols=47 Identities=13% Similarity=0.215 Sum_probs=37.0
Q ss_pred HHHHHHHHHhCCCCEEEEc-------c-----CC-------HHHHHHHHhcCCEEEEecCCCcccc
Q 010833 38 PTQVVALLKAQNIRHIRLY-------D-----AD-------RAMLLALANTGIQVTISVPNDQLLG 84 (499)
Q Consensus 38 ~~~vv~llk~~~i~~VRlY-------d-----ad-------~~vL~Ala~tgi~V~vgV~n~~~~~ 84 (499)
-+++++|||++|++.-|+= - .| .+++.++.+.||+-+|.+.--+++-
T Consensus 81 Y~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~ 146 (503)
T PLN02849 81 YKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQ 146 (503)
T ss_pred HHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcH
Confidence 4789999999999888753 1 23 3689999999999999998655544
No 19
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=88.95 E-value=1.4 Score=46.56 Aligned_cols=83 Identities=16% Similarity=0.167 Sum_probs=56.4
Q ss_pred HHHHHHHHHhCCCCEEEEccCC----------------HHHHHHHHhcCCEEEEecCCCccccc----------------
Q 010833 38 PTQVVALLKAQNIRHIRLYDAD----------------RAMLLALANTGIQVTISVPNDQLLGI---------------- 85 (499)
Q Consensus 38 ~~~vv~llk~~~i~~VRlYdad----------------~~vL~Ala~tgi~V~vgV~n~~~~~i---------------- 85 (499)
.+++++++|..|++.|||.... -.+|..+++.||+|+|+++....+..
T Consensus 12 ~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~~~g~ 91 (374)
T PF02449_consen 12 WEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPVDADGR 91 (374)
T ss_dssp HHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B-TTTS
T ss_pred HHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccccCCCCC
Confidence 5788999999999999984321 25889999999999999975321110
Q ss_pred ----cc-------c---HHHHHHHHHHHhcccCCCCcEEEEEecccccc
Q 010833 86 ----GQ-------S---NATAANWVARHVAAHVPTTNITAIAVGSEVLT 120 (499)
Q Consensus 86 ----a~-------~---~~~A~~Wv~~~v~~y~p~~~I~~I~VGNEvl~ 120 (499)
+. + ...+.+.++..+..|-....|.++-|.||.-.
T Consensus 92 ~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 92 RRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGY 140 (374)
T ss_dssp BEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTC
T ss_pred cCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCc
Confidence 00 0 23455666655566655678999999999865
No 20
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=82.70 E-value=32 Score=36.26 Aligned_cols=133 Identities=16% Similarity=0.173 Sum_probs=76.6
Q ss_pred CCCEEEEcc-CCHHHHHHHHhcCCEEEEecCCCccccccccHHHHHHHHHHHhcccCCCCcEEEEEeccccccC-CCCCh
Q 010833 49 NIRHIRLYD-ADRAMLLALANTGIQVTISVPNDQLLGIGQSNATAANWVARHVAAHVPTTNITAIAVGSEVLTV-LPNAG 126 (499)
Q Consensus 49 ~i~~VRlYd-ad~~vL~Ala~tgi~V~vgV~n~~~~~ia~~~~~A~~Wv~~~v~~y~p~~~I~~I~VGNEvl~~-~~~~~ 126 (499)
.+++|-+|+ .|++++..+...|++|++..-.. .+.+ .+++.-.+|+++.| .+...-...+|-+==|-... +....
T Consensus 55 ~~tti~~~~~~~~~~~~~A~~~~v~v~~~~~~~-~~~l-~~~~~R~~fi~siv-~~~~~~gfDGIdIDwE~p~~~~~~d~ 131 (358)
T cd02875 55 KVTTIAIFGDIDDELLCYAHSKGVRLVLKGDVP-LEQI-SNPTYRTQWIQQKV-ELAKSQFMDGINIDIEQPITKGSPEY 131 (358)
T ss_pred cceEEEecCCCCHHHHHHHHHcCCEEEEECccC-HHHc-CCHHHHHHHHHHHH-HHHHHhCCCeEEEcccCCCCCCcchH
Confidence 478888885 57899999999999999875322 2223 34444445555433 23222244555554443221 12234
Q ss_pred HHHHHHHHHHHHHHHhCCCCCceEEecccccccccccCCCCccccc-CCcchhhhhHHHHHHhcCCcccccccccc
Q 010833 127 PVLVSALKFIHSALVAANLDDQIKVSTPHSSSIILDSFPPSQAFFN-RSWDPVMVPLLKFLQSTGSYLMLNVYPYY 201 (499)
Q Consensus 127 ~~Ll~am~nv~~aL~~~gl~~~IkVsT~~s~~vl~~s~pPS~~~F~-~~~~~~l~~ll~fL~~t~s~~~vN~YPyf 201 (499)
..+..-|+.++++|++.+..-.|.|.++.. |+....+ -| +.-|.+..|++.|-.|=|+
T Consensus 132 ~~~t~llkelr~~l~~~~~~~~Lsvav~~~---------p~~~~~~~yd--------~~~l~~~vD~v~lMtYD~h 190 (358)
T cd02875 132 YALTELVKETTKAFKKENPGYQISFDVAWS---------PSCIDKRCYD--------YTGIADASDFLVVMDYDEQ 190 (358)
T ss_pred HHHHHHHHHHHHHHhhcCCCcEEEEEEecC---------cccccccccC--------HHHHHhhCCEeeEEeeccc
Confidence 578899999999999876543343333311 2111111 01 2235667889999999654
No 21
>PRK09936 hypothetical protein; Provisional
Probab=78.50 E-value=44 Score=34.58 Aligned_cols=129 Identities=15% Similarity=0.185 Sum_probs=70.8
Q ss_pred eeEEecCCCCCC-CC---HHHHHHHHHhCCCCEEEE-c----cCC--------HHHHHHHHhcCCEEEEecCCCc--ccc
Q 010833 24 IGVNIGTDLSDM-PS---PTQVVALLKAQNIRHIRL-Y----DAD--------RAMLLALANTGIQVTISVPNDQ--LLG 84 (499)
Q Consensus 24 iGvnYg~~~~n~-p~---~~~vv~llk~~~i~~VRl-Y----dad--------~~vL~Ala~tgi~V~vgV~n~~--~~~ 84 (499)
-|+=|=|...+. -+ .++..+.++.+|++++=+ | +.| ...|+++...||+|.||++-|. -.+
T Consensus 22 ~g~F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~Dp~y~q~ 101 (296)
T PRK09936 22 KGIFYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQAGLKLVVGLYADPEFFMH 101 (296)
T ss_pred ccceeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHHcCCEEEEcccCChHHHHH
Confidence 466799886652 23 355677778899976644 2 333 3688889999999999999874 123
Q ss_pred ccccHHHHHHHHHHHhccc---------CCCCcEEE--EEecccccc-CCCCChHHHHHHHHHHHHHHHhCCCCCceEEe
Q 010833 85 IGQSNATAANWVARHVAAH---------VPTTNITA--IAVGSEVLT-VLPNAGPVLVSALKFIHSALVAANLDDQIKVS 152 (499)
Q Consensus 85 ia~~~~~A~~Wv~~~v~~y---------~p~~~I~~--I~VGNEvl~-~~~~~~~~Ll~am~nv~~aL~~~gl~~~IkVs 152 (499)
+..|...-+.|++..+..- .+...+++ |-+-=|... .+...-..|+..++++.+.|.+. .+.|.||
T Consensus 102 ~~~d~~~~~~yl~~~l~~~~~qa~~~~~~~~~~v~GWYiP~ElDd~~W~~~~rR~~L~~~L~~~~~~l~~~--~kPv~IS 179 (296)
T PRK09936 102 QKQDGAALESYLNRQLGASLQQARLWSAAWGVPVDGWYLPAELDDLNWRDEARRQPLLTWLNAAQRLIDVS--AKPVHIS 179 (296)
T ss_pred HhcCchhHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEeeeccchhcccCHHHHHHHHHHHHHHHHhCCCC--CCCeEEE
Confidence 3334334445555432211 12333433 333222211 22222335666777776666522 1335555
Q ss_pred cc
Q 010833 153 TP 154 (499)
Q Consensus 153 T~ 154 (499)
+-
T Consensus 180 ay 181 (296)
T PRK09936 180 AF 181 (296)
T ss_pred ee
Confidence 43
No 22
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=78.22 E-value=1.1e+02 Score=33.63 Aligned_cols=47 Identities=11% Similarity=0.172 Sum_probs=37.3
Q ss_pred HHHHHHHHHhCCCCEEEEc--------c-----CC-------HHHHHHHHhcCCEEEEecCCCcccc
Q 010833 38 PTQVVALLKAQNIRHIRLY--------D-----AD-------RAMLLALANTGIQVTISVPNDQLLG 84 (499)
Q Consensus 38 ~~~vv~llk~~~i~~VRlY--------d-----ad-------~~vL~Ala~tgi~V~vgV~n~~~~~ 84 (499)
.+++++|||++|++.-|+= + .| .+++.+|.+.||+-+|.+.--+++.
T Consensus 75 y~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~ 141 (478)
T PRK09593 75 YKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPM 141 (478)
T ss_pred hHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCH
Confidence 6899999999999888763 1 23 2689999999999999997655553
No 23
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=72.77 E-value=1.1e+02 Score=33.67 Aligned_cols=248 Identities=15% Similarity=0.194 Sum_probs=112.3
Q ss_pred HHHhCCCCEEEEccC---C--------------------HHHHHHHHhcCCEEEEecCC--Ccccc-----cc-------
Q 010833 44 LLKAQNIRHIRLYDA---D--------------------RAMLLALANTGIQVTISVPN--DQLLG-----IG------- 86 (499)
Q Consensus 44 llk~~~i~~VRlYda---d--------------------~~vL~Ala~tgi~V~vgV~n--~~~~~-----ia------- 86 (499)
+.+..||+.||+... | -.++..+.+.||+-+|-+.- ..+.+ +.
T Consensus 48 ~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~vel~f~p~~~~~~~~~~~~~~~~~~p 127 (486)
T PF01229_consen 48 LQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVELGFMPMALASGYQTVFWYKGNISP 127 (486)
T ss_dssp HHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEEE-SB-GGGBSS--EETTTTEE-S-
T ss_pred HHhccCceEEEEEeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEEEEechhhhcCCCCccccccCCcCC
Confidence 334678999998731 1 25888999999997665532 11110 00
Q ss_pred -ccHHHH----HHHHHHHhcccCCCCcEE--EEEeccccccCC---CCChHHHHHHHHHHHHHHHhCCCCCceEEecccc
Q 010833 87 -QSNATA----ANWVARHVAAHVPTTNIT--AIAVGSEVLTVL---PNAGPVLVSALKFIHSALVAANLDDQIKVSTPHS 156 (499)
Q Consensus 87 -~~~~~A----~~Wv~~~v~~y~p~~~I~--~I~VGNEvl~~~---~~~~~~Ll~am~nv~~aL~~~gl~~~IkVsT~~s 156 (499)
.+...- .++++..+.+| ....|+ .+=|=||+=... .....+-....+.+.++|++.. ..+||+-|-.
T Consensus 128 p~~~~~W~~lv~~~~~h~~~RY-G~~ev~~W~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~--p~~~vGGp~~ 204 (486)
T PF01229_consen 128 PKDYEKWRDLVRAFARHYIDRY-GIEEVSTWYFEIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVD--PELKVGGPAF 204 (486)
T ss_dssp BS-HHHHHHHHHHHHHHHHHHH-HHHHHTTSEEEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH---TTSEEEEEEE
T ss_pred cccHHHHHHHHHHHHHHHHhhc-CCccccceeEEeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhC--CCCcccCccc
Confidence 122222 22233333333 111111 455788854321 1233456677778888888754 4588987711
Q ss_pred cccccccCCCCcccccCCcchhhhhHHHHHHhc---CCccccccccccccccCCCCcCcccccccCCCCCCceecCCCcc
Q 010833 157 SSIILDSFPPSQAFFNRSWDPVMVPLLKFLQST---GSYLMLNVYPYYDYMQSNGVIPLDYALFRPLPPNKEAVDANTLL 233 (499)
Q Consensus 157 ~~vl~~s~pPS~~~F~~~~~~~l~~ll~fL~~t---~s~~~vN~YPyf~~~~~~~~i~ld~AlF~~~~~~~~~~d~~~~~ 233 (499)
. + .....+...++|..+. -|++..+.||+-...... ......-.
T Consensus 205 ~--~-------------~~~~~~~~~l~~~~~~~~~~DfiS~H~y~~~~~~~~~----------------~~~~~~~~-- 251 (486)
T PF01229_consen 205 A--W-------------AYDEWCEDFLEFCKGNNCPLDFISFHSYGTDSAEDIN----------------ENMYERIE-- 251 (486)
T ss_dssp E--T-------------T-THHHHHHHHHHHHCT---SEEEEEEE-BESESE-S----------------S-EEEEB---
T ss_pred c--c-------------cHHHHHHHHHHHHhcCCCCCCEEEEEecccccccccc----------------hhHHhhhh--
Confidence 0 0 0123456677777653 477788888743221100 00000000
Q ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEEeeccCCCCCCCC-CCCCHHHHHHHHHHHHHHHHccCCCCCCCCCceeE--
Q 010833 234 HYTNVFDAIVDAAYFAMSDLNFTNIPLVVLESGWPSKGDSSE-SDATIDNANTYNSNLIRHVLNNTGTPKHPGIAVST-- 310 (499)
Q Consensus 234 ~Y~n~fDa~~Dav~~am~~~g~~~v~vvVtETGWPS~G~~~~-~~As~~na~~y~~~li~~~~s~~GTP~rp~~~~~~-- 310 (499)
....+++. +..+...+...+.+++++.++| |.+.-.... ..-|.-+|+-..+++++.... .++.
T Consensus 252 ~~~~~~~~-~~~~~~~~~~e~~p~~~~~~tE--~n~~~~~~~~~~dt~~~aA~i~k~lL~~~~~----------~l~~~s 318 (486)
T PF01229_consen 252 DSRRLFPE-LKETRPIINDEADPNLPLYITE--WNASISPRNPQHDTCFKAAYIAKNLLSNDGA----------FLDSFS 318 (486)
T ss_dssp -HHHHHHH-HHHHHHHHHTSSSTT--EEEEE--EES-SSTT-GGGGSHHHHHHHHH-HHHHGGG----------T-SEEE
T ss_pred hHHHHHHH-HHHHHHHHhhccCCCCceeecc--cccccCCCcchhccccchhhHHHHHHHhhhh----------hhhhhh
Confidence 11112222 2223234555678899999999 776543311 124455566555556555421 1222
Q ss_pred EE-E-EeecCCCCCCCCCCcccccccCCCCce
Q 010833 311 YI-Y-ELYNEDLRPGSVSEKNWGLFNANGVPV 340 (499)
Q Consensus 311 yi-F-elFdE~~K~g~~~E~~wGlf~~dgtpk 340 (499)
|| | ..|.|.-.+....-.-|||++.+|-+|
T Consensus 319 ywt~sD~Fee~~~~~~pf~ggfGLlt~~gI~K 350 (486)
T PF01229_consen 319 YWTFSDRFEENGTPRKPFHGGFGLLTKLGIPK 350 (486)
T ss_dssp ES-SBS---TTSS-SSSSSS-S-SEECCCEE-
T ss_pred ccchhhhhhccCCCCCceecchhhhhccCCCc
Confidence 21 2 345554433334566699999998555
No 24
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=72.47 E-value=24 Score=42.65 Aligned_cols=96 Identities=17% Similarity=0.165 Sum_probs=63.4
Q ss_pred eeEEecCCCCC---CCCH---HHHHHHHHhCCCCEEEEcc--CCHHHHHHHHhcCCEEEEecCCCc-----cccccccH-
Q 010833 24 IGVNIGTDLSD---MPSP---TQVVALLKAQNIRHIRLYD--ADRAMLLALANTGIQVTISVPNDQ-----LLGIGQSN- 89 (499)
Q Consensus 24 iGvnYg~~~~n---~p~~---~~vv~llk~~~i~~VRlYd--ad~~vL~Ala~tgi~V~vgV~n~~-----~~~ia~~~- 89 (499)
-|+|+-..... ..++ .++++++|+.|++.||+-. -++..+..+-..||-|+--++.+. ...+..++
T Consensus 353 rGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~dp~ 432 (1027)
T PRK09525 353 RGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEANIETHGMVPMNRLSDDPR 432 (1027)
T ss_pred EEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEecCccccCCccccCCCCCHH
Confidence 48887543221 2343 4567789999999999954 347899999999999998865421 01122222
Q ss_pred --HHHHHHHHHHhcccCCCCcEEEEEeccccc
Q 010833 90 --ATAANWVARHVAAHVPTTNITAIAVGSEVL 119 (499)
Q Consensus 90 --~~A~~Wv~~~v~~y~p~~~I~~I~VGNEvl 119 (499)
.+..+-+++.|.+......|..-.+|||.-
T Consensus 433 ~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 433 WLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 223333556677776677899999999963
No 25
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=68.34 E-value=21 Score=39.34 Aligned_cols=91 Identities=18% Similarity=0.129 Sum_probs=61.3
Q ss_pred HHHHHHHhcccCCCCcEEEEEeccccccCCCCChHHHHHHHHHHHHHHHhCCCCCceEEecccccccccccCCCCccccc
Q 010833 93 ANWVARHVAAHVPTTNITAIAVGSEVLTVLPNAGPVLVSALKFIHSALVAANLDDQIKVSTPHSSSIILDSFPPSQAFFN 172 (499)
Q Consensus 93 ~~Wv~~~v~~y~p~~~I~~I~VGNEvl~~~~~~~~~Ll~am~nv~~aL~~~gl~~~IkVsT~~s~~vl~~s~pPS~~~F~ 172 (499)
...|...|.+|--+..|.+-+.-||.+-+.+.....++...+.+.+.++..+=++-|.|+ +...-|.. |-|-.+.|
T Consensus 123 kkyvedlVk~yk~~ptI~gw~l~Ne~lv~~p~s~N~f~~w~~emy~yiK~ldd~hlvsvG--D~~sp~~~-~~pyN~r~- 198 (587)
T COG3934 123 KKYVEDLVKPYKLDPTIAGWALRNEPLVEAPISVNNFWDWSGEMYAYIKWLDDGHLVSVG--DPASPWPQ-YAPYNARF- 198 (587)
T ss_pred HHHHHHHhhhhccChHHHHHHhcCCccccccCChhHHHHHHHHHHHHhhccCCCCeeecC--CcCCcccc-cCCcccce-
Confidence 456777777776667788888899977766777778999999999999987665544444 43322332 22222222
Q ss_pred CCcchhhhhHHHHHHhcCCcccccccccccc
Q 010833 173 RSWDPVMVPLLKFLQSTGSYLMLNVYPYYDY 203 (499)
Q Consensus 173 ~~~~~~l~~ll~fL~~t~s~~~vN~YPyf~~ 203 (499)
+.|+=.-++||+|.-
T Consensus 199 ----------------~vDya~~hLY~hyd~ 213 (587)
T COG3934 199 ----------------YVDYAANHLYRHYDT 213 (587)
T ss_pred ----------------eeccccchhhhhccC
Confidence 456667889986654
No 26
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=62.14 E-value=10 Score=35.72 Aligned_cols=37 Identities=24% Similarity=0.483 Sum_probs=27.1
Q ss_pred HHHHHhCCCCEEEEccCCHHHHHHHHhcCCEEEEecC
Q 010833 42 VALLKAQNIRHIRLYDADRAMLLALANTGIQVTISVP 78 (499)
Q Consensus 42 v~llk~~~i~~VRlYdad~~vL~Ala~tgi~V~vgV~ 78 (499)
.++|+.+||++||+...+|.=+.+|.+.||+|.=-||
T Consensus 132 aqIL~dLGV~~~rLLtnnp~k~~~L~g~gleV~~~vp 168 (169)
T PF00925_consen 132 AQILRDLGVKKMRLLTNNPRKYVALEGFGLEVVERVP 168 (169)
T ss_dssp HHHHHHTT--SEEEE-S-HHHHHHHHHTT--EEEEE-
T ss_pred HHHHHHcCCCEEEECCCChhHHHHHhcCCCEEEEEec
Confidence 6799999999999999999999999999999975544
No 27
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=61.60 E-value=28 Score=27.04 Aligned_cols=44 Identities=23% Similarity=0.304 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHhCCCCEEEEccCC-----HHHHHHHHhcCCEEEEecC
Q 010833 35 MPSPTQVVALLKAQNIRHIRLYDAD-----RAMLLALANTGIQVTISVP 78 (499)
Q Consensus 35 ~p~~~~vv~llk~~~i~~VRlYdad-----~~vL~Ala~tgi~V~vgV~ 78 (499)
.-++++.++..+++|++.|=+=|-+ +...+.+++.||+|+.|+.
T Consensus 14 ~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E 62 (67)
T smart00481 14 ALSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLE 62 (67)
T ss_pred cCCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEE
Confidence 3468999999999999998877766 5667777889999999984
No 28
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=55.47 E-value=19 Score=34.88 Aligned_cols=36 Identities=28% Similarity=0.471 Sum_probs=31.9
Q ss_pred HHHHHhCCCCEEEEccCCHHHHHHHHhcCCEEEEec
Q 010833 42 VALLKAQNIRHIRLYDADRAMLLALANTGIQVTISV 77 (499)
Q Consensus 42 v~llk~~~i~~VRlYdad~~vL~Ala~tgi~V~vgV 77 (499)
+|+|+.+||+++|+...++.=+.+|.+.||+|.=-+
T Consensus 134 AQIL~dLGV~~mrLLtn~~~k~~~L~g~GleV~~~~ 169 (197)
T PRK00393 134 ADMLKALGVKKVRLLTNNPKKVEALTEAGINIVERV 169 (197)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEe
Confidence 679999999999999999888889999999997333
No 29
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=55.43 E-value=19 Score=34.64 Aligned_cols=34 Identities=18% Similarity=0.389 Sum_probs=31.0
Q ss_pred HHHHHhCCCCEEEEccCCHHHHHHHHhcCCEEEE
Q 010833 42 VALLKAQNIRHIRLYDADRAMLLALANTGIQVTI 75 (499)
Q Consensus 42 v~llk~~~i~~VRlYdad~~vL~Ala~tgi~V~v 75 (499)
.|+|+.+||++||+...++.=+.+|.+.||+|.=
T Consensus 131 AQIL~dLGV~~~rLLtn~~~k~~~L~g~gleVv~ 164 (191)
T TIGR00505 131 ADILEDLGVKKVRLLTNNPKKIEILKKAGINIVE 164 (191)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEE
Confidence 6799999999999999998888899999999873
No 30
>PLN03059 beta-galactosidase; Provisional
Probab=55.25 E-value=1.8e+02 Score=34.42 Aligned_cols=117 Identities=12% Similarity=0.074 Sum_probs=72.2
Q ss_pred HHHHHHHHHhCCCCEEEEcc---CC---------------HHHHHHHHhcCCEEEEec---------------CCCcccc
Q 010833 38 PTQVVALLKAQNIRHIRLYD---AD---------------RAMLLALANTGIQVTISV---------------PNDQLLG 84 (499)
Q Consensus 38 ~~~vv~llk~~~i~~VRlYd---ad---------------~~vL~Ala~tgi~V~vgV---------------~n~~~~~ 84 (499)
..+.++.+|..|++.|-+|- .. ..-|+.+++.|+.|+|=. |.-..+.
T Consensus 61 W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~ 140 (840)
T PLN03059 61 WPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPG 140 (840)
T ss_pred HHHHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCC
Confidence 35677888999999999982 11 356888889999999843 2111111
Q ss_pred --c-cccH---HHHHHHHHHHhccc------C-CCCcEEEEEeccccccCCCCChHHHHHHHHHHHHHHHhCCCCCceEE
Q 010833 85 --I-GQSN---ATAANWVARHVAAH------V-PTTNITAIAVGSEVLTVLPNAGPVLVSALKFIHSALVAANLDDQIKV 151 (499)
Q Consensus 85 --i-a~~~---~~A~~Wv~~~v~~y------~-p~~~I~~I~VGNEvl~~~~~~~~~Ll~am~nv~~aL~~~gl~~~IkV 151 (499)
+ ..++ .+.++|+...+... + ..-.|..+=|-||-=.-.......-..+|+.+++.+++.|++ |+.
T Consensus 141 i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~--VPl 218 (840)
T PLN03059 141 IEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYGPVEWEIGAPGKAYTKWAADMAVKLGTG--VPW 218 (840)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccccceecccCcchHHHHHHHHHHHHHcCCC--cce
Confidence 1 1122 35667766543222 1 245799999999942210000012367999999999999984 666
Q ss_pred ecccc
Q 010833 152 STPHS 156 (499)
Q Consensus 152 sT~~s 156 (499)
-|.+.
T Consensus 219 ~t~dg 223 (840)
T PLN03059 219 VMCKQ 223 (840)
T ss_pred EECCC
Confidence 65554
No 31
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.68 E-value=42 Score=35.79 Aligned_cols=60 Identities=20% Similarity=0.370 Sum_probs=41.1
Q ss_pred cccHHHHHHHHHHHHHHhcCCCCccEEEEeeccCCCCCCCC--C-CCCHHHHHHHHHHHHHHHHcc
Q 010833 235 YTNVFDAIVDAAYFAMSDLNFTNIPLVVLESGWPSKGDSSE--S-DATIDNANTYNSNLIRHVLNN 297 (499)
Q Consensus 235 Y~n~fDa~~Dav~~am~~~g~~~v~vvVtETGWPS~G~~~~--~-~As~~na~~y~~~li~~~~s~ 297 (499)
|.|-||+-+-.........|...++|+++ |||.|.--+ . ..|-..++.-+.++++.+...
T Consensus 125 fNntf~dav~R~aqI~~d~g~~~~pVvFS---WPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~~ 187 (377)
T COG4782 125 FNNTFEDAVYRTAQIVHDSGNDGVPVVFS---WPSRGSLLGYNYDRESTNYSRPALERLLRYLATD 187 (377)
T ss_pred cCCchhHHHHHHHHHHhhcCCCcceEEEE---cCCCCeeeecccchhhhhhhHHHHHHHHHHHHhC
Confidence 66777755554444455678888899988 999998622 2 255566677778888888754
No 32
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=53.83 E-value=40 Score=35.28 Aligned_cols=82 Identities=10% Similarity=0.052 Sum_probs=37.9
Q ss_pred HHHHHHHhcCCEEEEecCCCccccccccHHHHHHHHHHHhcccCC-----CCcEEEEEeccccccCC---CCChHHHHHH
Q 010833 61 AMLLALANTGIQVTISVPNDQLLGIGQSNATAANWVARHVAAHVP-----TTNITAIAVGSEVLTVL---PNAGPVLVSA 132 (499)
Q Consensus 61 ~vL~Ala~tgi~V~vgV~n~~~~~ia~~~~~A~~Wv~~~v~~y~p-----~~~I~~I~VGNEvl~~~---~~~~~~Ll~a 132 (499)
++.+-+..+|.+|+.|+.--.-.....+....-.|--+|-..++. .=+|.+-=.|||.-... ...+.++..-
T Consensus 113 ~l~~F~~~tG~~liFgLNAL~g~~~~~~~~~~g~WnssNA~~Ll~Yt~skgy~I~~WELGNEl~g~g~~~~v~a~qyakD 192 (319)
T PF03662_consen 113 ELNNFAQKTGLKLIFGLNALLGRRQLADRDWDGSWNSSNAQSLLKYTASKGYNIDSWELGNELNGSGVGASVSAEQYAKD 192 (319)
T ss_dssp HHHHHHHHHT-EEEEEE-TTTS-HHHHHHHHHHHHHHH-TTTEEEEEESS-GGG--------HHHHSSSTT--HHHHHHH
T ss_pred HHHHHHHHhCCEEEEEecccCCCCCCCCCCcCCCCChHHHHHHHHHHHHcCCCccccccccccCCCCCCCccCHHHHHHH
Confidence 344445579999999995321111111223456788887544432 23677788899976432 3456688888
Q ss_pred HHHHHHHHHh
Q 010833 133 LKFIHSALVA 142 (499)
Q Consensus 133 m~nv~~aL~~ 142 (499)
...+|+.|++
T Consensus 193 ~~~Lr~il~~ 202 (319)
T PF03662_consen 193 FIQLRKILNE 202 (319)
T ss_dssp H---HHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888888876
No 33
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=53.31 E-value=1.9e+02 Score=27.14 Aligned_cols=101 Identities=15% Similarity=0.037 Sum_probs=57.2
Q ss_pred HHHHHHHHHhCCCCEEEE----------ccCC--------------HHHHHHHHhcCCEEEEecCCCc-cccccccHHHH
Q 010833 38 PTQVVALLKAQNIRHIRL----------YDAD--------------RAMLLALANTGIQVTISVPNDQ-LLGIGQSNATA 92 (499)
Q Consensus 38 ~~~vv~llk~~~i~~VRl----------Ydad--------------~~vL~Ala~tgi~V~vgV~n~~-~~~ia~~~~~A 92 (499)
.++.++.||..||+.|=+ |.++ ..+|+++.+.||+|.+|++.+. --. ..+.+..
T Consensus 22 W~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~~~w~-~~~~~~~ 100 (166)
T PF14488_consen 22 WREEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFDPDYWD-QGDLDWE 100 (166)
T ss_pred HHHHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCCchhhh-ccCHHHH
Confidence 467788899999987722 2221 3688999999999999999652 111 1221111
Q ss_pred HH---HHHHHhc-ccCCCCcEEEEEeccccccCCCCChHHHHHHHHHHHHHHHhC
Q 010833 93 AN---WVARHVA-AHVPTTNITAIAVGSEVLTVLPNAGPVLVSALKFIHSALVAA 143 (499)
Q Consensus 93 ~~---Wv~~~v~-~y~p~~~I~~I~VGNEvl~~~~~~~~~Ll~am~nv~~aL~~~ 143 (499)
.. -|.+.+. .|-....+.+-=+-.|+=... ....++.+.+.+.|++.
T Consensus 101 ~~~~~~v~~el~~~yg~h~sf~GWYip~E~~~~~----~~~~~~~~~l~~~lk~~ 151 (166)
T PF14488_consen 101 AERNKQVADELWQRYGHHPSFYGWYIPYEIDDYN----WNAPERFALLGKYLKQI 151 (166)
T ss_pred HHHHHHHHHHHHHHHcCCCCCceEEEecccCCcc----cchHHHHHHHHHHHHHh
Confidence 11 1222222 232233566777777765432 23356666666666654
No 34
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=52.65 E-value=2.1e+02 Score=31.79 Aligned_cols=91 Identities=19% Similarity=0.105 Sum_probs=52.4
Q ss_pred HHHHHH-hcCCEEEEecCCC--------cc---ccccc---c--HHHHHHHHHHHhcccCC-CCcEEEEEeccccccC--
Q 010833 62 MLLALA-NTGIQVTISVPND--------QL---LGIGQ---S--NATAANWVARHVAAHVP-TTNITAIAVGSEVLTV-- 121 (499)
Q Consensus 62 vL~Ala-~tgi~V~vgV~n~--------~~---~~ia~---~--~~~A~~Wv~~~v~~y~p-~~~I~~I~VGNEvl~~-- 121 (499)
+-+|++ +.+|+|+..-|-. .. ..+.. + .++=+..+.+-|..|-. ..+|-+|.+.||+...
T Consensus 159 ik~a~~~~~~lki~aSpWSpP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~~~ 238 (496)
T PF02055_consen 159 IKEALAINPNLKIFASPWSPPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEPDNGSD 238 (496)
T ss_dssp HHHHHHHHTT-EEEEEES---GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSCCGGGS
T ss_pred HHHHHHhCCCcEEEEecCCCCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCCCCCCC
Confidence 333444 4568999988863 11 11111 1 12334455566666643 5899999999999852
Q ss_pred ---C----CCChHHHHHHHHH-HHHHHHhCCCCCceEEe
Q 010833 122 ---L----PNAGPVLVSALKF-IHSALVAANLDDQIKVS 152 (499)
Q Consensus 122 ---~----~~~~~~Ll~am~n-v~~aL~~~gl~~~IkVs 152 (499)
. ..++++....|++ +.-+|++.++..++||-
T Consensus 239 ~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~ 277 (496)
T PF02055_consen 239 PNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKIL 277 (496)
T ss_dssp TT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEE
T ss_pred CCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEE
Confidence 1 1235577777876 99999999995568864
No 35
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=48.72 E-value=1.3e+02 Score=32.20 Aligned_cols=106 Identities=11% Similarity=0.060 Sum_probs=61.7
Q ss_pred HHHHHHHHhCCCCEEEEccC----------CH------------HHHHHHHhcCCEEEEecCCCc-----ccc------c
Q 010833 39 TQVVALLKAQNIRHIRLYDA----------DR------------AMLLALANTGIQVTISVPNDQ-----LLG------I 85 (499)
Q Consensus 39 ~~vv~llk~~~i~~VRlYda----------d~------------~vL~Ala~tgi~V~vgV~n~~-----~~~------i 85 (499)
+++...+|+.|++.|||.-. +| ++++.+.+-||+|++.+-.-. ... .
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~ 155 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDY 155 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccc
Confidence 67888999999999999732 32 356677789999999854321 111 1
Q ss_pred cccHHHHHHHH--HHHhc-ccCCCCcEEEEEecccccc-CCCCChHHH-HHHHHHHHHHHHhCC
Q 010833 86 GQSNATAANWV--ARHVA-AHVPTTNITAIAVGSEVLT-VLPNAGPVL-VSALKFIHSALVAAN 144 (499)
Q Consensus 86 a~~~~~A~~Wv--~~~v~-~y~p~~~I~~I~VGNEvl~-~~~~~~~~L-l~am~nv~~aL~~~g 144 (499)
......-..++ .+.|. +|-....|.+|-+=||+.. ..+..+..- -+|...|++++....
T Consensus 156 ~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~~~~~~~w~~~~~~A~~~v~~~i~~~~ 219 (407)
T COG2730 156 KEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNGIVTSETWNGGDDEAYDVVRNAILSNA 219 (407)
T ss_pred cccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcccCCccccccchHHHHHHHHhhhhhcC
Confidence 11000111121 12233 3333567787888899984 112223323 588888876665543
No 36
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=47.86 E-value=1.5e+02 Score=31.58 Aligned_cols=63 Identities=13% Similarity=0.210 Sum_probs=35.4
Q ss_pred CCChHHHHHHHHHHHHHHHhCCCCCceEEecccccccccccCCCCcccccCCcchhhhhHHHHHHhcCCccccccccccc
Q 010833 123 PNAGPVLVSALKFIHSALVAANLDDQIKVSTPHSSSIILDSFPPSQAFFNRSWDPVMVPLLKFLQSTGSYLMLNVYPYYD 202 (499)
Q Consensus 123 ~~~~~~Ll~am~nv~~aL~~~gl~~~IkVsT~~s~~vl~~s~pPS~~~F~~~~~~~l~~ll~fL~~t~s~~~vN~YPyf~ 202 (499)
..+....+.+++.+|+... .+.|++..-. .+| + +-.+.+...++|+.+.. +-.+++|||--
T Consensus 269 ~~~~~~~~~~v~~l~~~~~------gi~i~~~~Iv-----G~P---g----ET~ed~~~tl~~i~~~~-~~~~~~~~~sp 329 (414)
T TIGR01579 269 KYTRDDFLKLVNKLRSVRP------DYAFGTDIIV-----GFP---G----ESEEDFQETLRMVKEIE-FSHLHIFPYSA 329 (414)
T ss_pred CCCHHHHHHHHHHHHHhCC------CCeeeeeEEE-----ECC---C----CCHHHHHHHHHHHHhCC-CCEEEeeecCC
Confidence 3456677888888887431 2445543321 133 1 11345667888887654 45567776655
Q ss_pred cc
Q 010833 203 YM 204 (499)
Q Consensus 203 ~~ 204 (499)
+-
T Consensus 330 ~p 331 (414)
T TIGR01579 330 RP 331 (414)
T ss_pred CC
Confidence 43
No 37
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=46.51 E-value=24 Score=37.72 Aligned_cols=34 Identities=12% Similarity=0.156 Sum_probs=30.5
Q ss_pred HHHHHHhCCCCEEEEccCCHHHHHHHHhcCCEEEE
Q 010833 41 VVALLKAQNIRHIRLYDADRAMLLALANTGIQVTI 75 (499)
Q Consensus 41 vv~llk~~~i~~VRlYdad~~vL~Ala~tgi~V~v 75 (499)
-.++||.+||++|||. .||.=+.+|.+.||+|.=
T Consensus 330 gAqILr~LGV~kirLL-nNP~K~~~L~~~GIeV~~ 363 (369)
T PRK12485 330 GAQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVVE 363 (369)
T ss_pred HHHHHHHcCCCEEEEC-CCchhhhhhhhCCcEEEE
Confidence 3779999999999999 789889999999999973
No 38
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=45.70 E-value=33 Score=33.02 Aligned_cols=37 Identities=30% Similarity=0.478 Sum_probs=32.2
Q ss_pred HHHHHhCCCCEEEEccCCHHHHHHHHhcCCEEEEecC
Q 010833 42 VALLKAQNIRHIRLYDADRAMLLALANTGIQVTISVP 78 (499)
Q Consensus 42 v~llk~~~i~~VRlYdad~~vL~Ala~tgi~V~vgV~ 78 (499)
.|+|+.+||+++|+...++.=+.+|.+.||+|.=-++
T Consensus 133 AQIL~dLGv~~mrLLs~~~~k~~~L~gfglevv~~~~ 169 (193)
T cd00641 133 AQILRDLGIKSVRLLTNNPDKIDALEGYGIEVVERVP 169 (193)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 6799999999999999988788899999999984443
No 39
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=44.26 E-value=1.2e+02 Score=28.55 Aligned_cols=84 Identities=21% Similarity=0.237 Sum_probs=48.7
Q ss_pred HHHHHHHhc--CCEEEEecCCCcccc---ccccHHHHHHHHHHHhcccCCCCcEEEEEeccccccCCC-CChHHHHHHHH
Q 010833 61 AMLLALANT--GIQVTISVPNDQLLG---IGQSNATAANWVARHVAAHVPTTNITAIAVGSEVLTVLP-NAGPVLVSALK 134 (499)
Q Consensus 61 ~vL~Ala~t--gi~V~vgV~n~~~~~---ia~~~~~A~~Wv~~~v~~y~p~~~I~~I~VGNEvl~~~~-~~~~~Ll~am~ 134 (499)
..++.++.. |++|++.|....... +..+.+..++.++ ++..+...-++.+|-+==|-..... .....++..|+
T Consensus 53 ~~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~-~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~ 131 (210)
T cd00598 53 GALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFAN-SLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLR 131 (210)
T ss_pred HHHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHHH-HHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHH
Confidence 456777765 999999998654322 3445444444333 3333332234555555334332211 12468999999
Q ss_pred HHHHHHHhCCC
Q 010833 135 FIHSALVAANL 145 (499)
Q Consensus 135 nv~~aL~~~gl 145 (499)
.+|++|.+.++
T Consensus 132 ~lr~~l~~~~~ 142 (210)
T cd00598 132 ELRSALGAANY 142 (210)
T ss_pred HHHHHhcccCc
Confidence 99999987644
No 40
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=44.15 E-value=1.4e+02 Score=25.86 Aligned_cols=37 Identities=22% Similarity=0.271 Sum_probs=28.6
Q ss_pred ccCCceeEEecCCCCCCCCHHHHHHHHHhCCCCEEEE
Q 010833 19 DKDAFIGVNIGTDLSDMPSPTQVVALLKAQNIRHIRL 55 (499)
Q Consensus 19 ~~~~~iGvnYg~~~~n~p~~~~vv~llk~~~i~~VRl 55 (499)
.+.+.+-|+-...+..++...++.+.|++.||..-++
T Consensus 29 ge~pAvqIs~~~~~~~~~~~~~v~~~L~~~~I~~k~i 65 (101)
T PF13721_consen 29 GEDPAVQISASSAGVQLPDAFQVEQALKAAGIAVKSI 65 (101)
T ss_pred CCCCcEEEecCCCCccCChHHHHHHHHHHCCCCcceE
Confidence 3556788888777778888889999999998865444
No 41
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=42.58 E-value=1.1e+02 Score=31.10 Aligned_cols=83 Identities=10% Similarity=0.119 Sum_probs=50.4
Q ss_pred HHHHHHHHhcCCEEEEecCCCc--------cccccccHHHHHHHHHHHhcccCCCCcEEEEEeccccccCCCCChHHHHH
Q 010833 60 RAMLLALANTGIQVTISVPNDQ--------LLGIGQSNATAANWVARHVAAHVPTTNITAIAVGSEVLTVLPNAGPVLVS 131 (499)
Q Consensus 60 ~~vL~Ala~tgi~V~vgV~n~~--------~~~ia~~~~~A~~Wv~~~v~~y~p~~~I~~I~VGNEvl~~~~~~~~~Ll~ 131 (499)
+.++.++++.+++|++.|.+.. ...+.+++..-..++ ++|..+...-.+.+|-+-=|-+.. ......+.
T Consensus 48 ~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~fi-~~iv~~l~~~~~DGidiDwE~~~~--~d~~~~~~ 124 (313)
T cd02874 48 ERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQRLI-NNILALAKKYGYDGVNIDFENVPP--EDREAYTQ 124 (313)
T ss_pred HHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHHHH-HHHHHHHHHhCCCcEEEecccCCH--HHHHHHHH
Confidence 6889999889999999987643 123344443223333 333333222244556554454421 23457889
Q ss_pred HHHHHHHHHHhCCC
Q 010833 132 ALKFIHSALVAANL 145 (499)
Q Consensus 132 am~nv~~aL~~~gl 145 (499)
-|+.++++|.+.|+
T Consensus 125 fl~~lr~~l~~~~~ 138 (313)
T cd02874 125 FLRELSDRLHPAGY 138 (313)
T ss_pred HHHHHHHHhhhcCc
Confidence 99999999987664
No 42
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=42.12 E-value=59 Score=28.77 Aligned_cols=121 Identities=17% Similarity=0.203 Sum_probs=64.3
Q ss_pred HHHHHhCCCCEEEEccCC----------HHHHHHHHhcCCEEEEecCCCccccccccHHHHHHHHHHHhcccCCCCcEEE
Q 010833 42 VALLKAQNIRHIRLYDAD----------RAMLLALANTGIQVTISVPNDQLLGIGQSNATAANWVARHVAAHVPTTNITA 111 (499)
Q Consensus 42 v~llk~~~i~~VRlYdad----------~~vL~Ala~tgi~V~vgV~n~~~~~ia~~~~~A~~Wv~~~v~~y~p~~~I~~ 111 (499)
++.|.++|.++|-+.... ....+++++.|++...-......... ........|+++. .| .+
T Consensus 1 ~~~L~~~G~r~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~----~p----da 71 (160)
T PF13377_consen 1 VDYLIERGHRRIAFIGGPPNSSVSRERLEGFREALKEHGIEFEELIFFSDDDSE-DAREAQLLWLRRL----RP----DA 71 (160)
T ss_dssp HHHHHHTT-SSEEEEESSTTSHHHHHHHHHHHHHHHHTTSEEEGEEEEESSSHH-HHHHHHHHHHHTC----SS----SE
T ss_pred ChHHHHCCCCeEEEEecCCCChhHHHHHHHHHHHHHHCCCCCCeeEeecCCcch-hHHHHHHHHHhcC----CC----cE
Confidence 355667788888877633 24677888999985543332211111 1111223366433 23 48
Q ss_pred EEeccccccCCCCChHHHHHHHHHHHHHHHhCCC--CCceEEecccccccccccCCCCcccccCCcchhhhhHHHH
Q 010833 112 IAVGSEVLTVLPNAGPVLVSALKFIHSALVAANL--DDQIKVSTPHSSSIILDSFPPSQAFFNRSWDPVMVPLLKF 185 (499)
Q Consensus 112 I~VGNEvl~~~~~~~~~Ll~am~nv~~aL~~~gl--~~~IkVsT~~s~~vl~~s~pPS~~~F~~~~~~~l~~ll~f 185 (499)
|+++|+.+. ..+..+|.+.|+ .++|.|-+-+..... ....|....++.+...+-+..++-
T Consensus 72 ii~~~~~~a-------------~~~~~~l~~~g~~vP~di~vv~~~~~~~~-~~~~p~it~i~~~~~~~g~~a~~~ 133 (160)
T PF13377_consen 72 IICSNDRLA-------------LGVLRALRELGIRVPQDISVVSFDDSPLL-EFFSPPITTIDQDPREMGREAVEL 133 (160)
T ss_dssp EEESSHHHH-------------HHHHHHHHHTTSCTTTTSEEEEESSSGHH-HCSSSTSEEEEE-HHHHHHHHHHH
T ss_pred EEEcCHHHH-------------HHHHHHHHHcCCcccccccEEEecCcHHH-HHHcCCCceecCCHHHHHHHHHHH
Confidence 888886642 234466667776 356877775554444 333455666666654443333333
No 43
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=42.06 E-value=67 Score=31.71 Aligned_cols=44 Identities=18% Similarity=0.379 Sum_probs=26.6
Q ss_pred HHhcCCCCccEEEEeeccCCCCCCCCC---CCCHHHHHHHHHHHHHHHHc
Q 010833 250 MSDLNFTNIPLVVLESGWPSKGDSSES---DATIDNANTYNSNLIRHVLN 296 (499)
Q Consensus 250 m~~~g~~~v~vvVtETGWPS~G~~~~~---~As~~na~~y~~~li~~~~s 296 (499)
...++++.++|+.+ |||.|...+. ..+...++..+..+++.+..
T Consensus 42 ~~~~~~~~~~i~Fs---WPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~~ 88 (233)
T PF05990_consen 42 AHDLGFPGVVILFS---WPSDGSLLGYFYDRESARFSGPALARFLRDLAR 88 (233)
T ss_pred HHHhCCCceEEEEE---cCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence 34567777666665 9999985321 23444445555667776654
No 44
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=41.95 E-value=31 Score=36.77 Aligned_cols=36 Identities=22% Similarity=0.412 Sum_probs=31.7
Q ss_pred HHHHHhCCCCEEEEccCCHHHHHHHHhcCCEEEEecC
Q 010833 42 VALLKAQNIRHIRLYDADRAMLLALANTGIQVTISVP 78 (499)
Q Consensus 42 v~llk~~~i~~VRlYdad~~vL~Ala~tgi~V~vgV~ 78 (499)
.|+|+.+||++|||.. ||.=+.+|.+.||+|.==++
T Consensus 328 aqIL~~Lgv~~irLlT-np~K~~~L~~~Gi~V~~~~~ 363 (367)
T PRK14019 328 AQILRDLGVGKMRLLS-SPRKFPSMSGFGLEVTGYVP 363 (367)
T ss_pred HHHHHHcCCCeEEECC-CcHHHHhhhhCCcEEEEEec
Confidence 6799999999999998 99999999999999974443
No 45
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=41.35 E-value=3.6e+02 Score=26.57 Aligned_cols=47 Identities=15% Similarity=0.248 Sum_probs=33.1
Q ss_pred cCCCCCCC---CHHHHHHHHHhCCCCEEEEccC-----------C----HHHHHHHHhcCCEEEE
Q 010833 29 GTDLSDMP---SPTQVVALLKAQNIRHIRLYDA-----------D----RAMLLALANTGIQVTI 75 (499)
Q Consensus 29 g~~~~n~p---~~~~vv~llk~~~i~~VRlYda-----------d----~~vL~Ala~tgi~V~v 75 (499)
|.+...+| +.++.++.+++.|++.|-+.-. + ..+.++++.+||+|..
T Consensus 6 g~~~~~~~~~~~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~ 70 (284)
T PRK13210 6 GIYEKALPKHLSWEERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPS 70 (284)
T ss_pred chhhhhcCCCCCHHHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceE
Confidence 33333454 6789999999999999888521 1 2466678899999863
No 46
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=39.19 E-value=66 Score=28.99 Aligned_cols=40 Identities=18% Similarity=0.234 Sum_probs=36.8
Q ss_pred HHHHHHHHhCCCCEEEEccCCHHHHHHHHhcCCEEEEecC
Q 010833 39 TQVVALLKAQNIRHIRLYDADRAMLLALANTGIQVTISVP 78 (499)
Q Consensus 39 ~~vv~llk~~~i~~VRlYdad~~vL~Ala~tgi~V~vgV~ 78 (499)
.++.++|+.+|++.|=+...-+..+.+|++.||+|+.+-.
T Consensus 55 ~~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 55 IRIAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 3688999999999999988889999999999999999976
No 47
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=38.89 E-value=3.1e+02 Score=26.38 Aligned_cols=129 Identities=13% Similarity=0.186 Sum_probs=63.0
Q ss_pred HHHHHHHHHhCCCCEEEEccCC---------HHHHHHHHhcCCEEEEe--cCCCccccccccHHHHHHHHHHHhcccCCC
Q 010833 38 PTQVVALLKAQNIRHIRLYDAD---------RAMLLALANTGIQVTIS--VPNDQLLGIGQSNATAANWVARHVAAHVPT 106 (499)
Q Consensus 38 ~~~vv~llk~~~i~~VRlYdad---------~~vL~Ala~tgi~V~vg--V~n~~~~~ia~~~~~A~~Wv~~~v~~y~p~ 106 (499)
-...++.|.+.|.++|=+.... ....++++..|+++.+- .+.............+.+|++++ +
T Consensus 97 g~~~~~~l~~~g~~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~- 170 (265)
T cd01543 97 GRMAAEHFLERGFRHFAFYGLPGARWSDEREEAFRQLVAEAGYECSFFYRGLSTDAQSWEEEQEELAQWLQSL-----P- 170 (265)
T ss_pred HHHHHHHHHHCCCcEEEEEcCCCCHHHHHHHHHHHHHHHHcCCccccccCccccccccHHHHHHHHHHHHhcC-----C-
Confidence 3455666766777777655322 13455677788876211 11111111111223445554432 2
Q ss_pred CcEEEEEeccccccCCCCChHHHHHHHHHHHHHHHhCCC--CCceEEecccccccccccCCCCcccccCCcchhhhhHHH
Q 010833 107 TNITAIAVGSEVLTVLPNAGPVLVSALKFIHSALVAANL--DDQIKVSTPHSSSIILDSFPPSQAFFNRSWDPVMVPLLK 184 (499)
Q Consensus 107 ~~I~~I~VGNEvl~~~~~~~~~Ll~am~nv~~aL~~~gl--~~~IkVsT~~s~~vl~~s~pPS~~~F~~~~~~~l~~ll~ 184 (499)
.+++|++.|+.+. .. +.++|++.|+ .++|.|.+-+....+..-..|.-.+...+...+-+..++
T Consensus 171 -~~~ai~~~~d~~a---------~g----~~~~l~~~g~~vp~di~vigfd~~~~~~~~~~~~ltti~~~~~~~g~~a~~ 236 (265)
T cd01543 171 -KPVGIFACTDARA---------RQ----LLEACRRAGIAVPEEVAVLGVDNDELICELSRPPLSSVEQNAERIGYEAAK 236 (265)
T ss_pred -CCcEEEecChHHH---------HH----HHHHHHHhCCCCCCceEEEeeCCchhhhccCCCCCceeecCHHHHHHHHHH
Confidence 3567888775532 12 3345555665 356777665554332232334445555555444444444
Q ss_pred HH
Q 010833 185 FL 186 (499)
Q Consensus 185 fL 186 (499)
.|
T Consensus 237 ~l 238 (265)
T cd01543 237 LL 238 (265)
T ss_pred HH
Confidence 44
No 48
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=37.67 E-value=73 Score=34.99 Aligned_cols=77 Identities=10% Similarity=0.150 Sum_probs=51.2
Q ss_pred HHHHHHHHHhCCCCEEEEc--------c----CC-------HHHHHHHHhcCCEEEEecCCCccccccccHHHHHHHHHH
Q 010833 38 PTQVVALLKAQNIRHIRLY--------D----AD-------RAMLLALANTGIQVTISVPNDQLLGIGQSNATAANWVAR 98 (499)
Q Consensus 38 ~~~vv~llk~~~i~~VRlY--------d----ad-------~~vL~Ala~tgi~V~vgV~n~~~~~ia~~~~~A~~Wv~~ 98 (499)
-+++++|||++|++.-|+= + .| .+++.+|.+.||+-+|.+.--+++..-.+ .-.|..+
T Consensus 56 y~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~---~GGW~n~ 132 (469)
T PRK13511 56 YPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEALHS---NGDWLNR 132 (469)
T ss_pred hHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHHHHH---cCCCCCH
Confidence 5899999999999888763 1 13 36899999999999999987665542111 1234332
Q ss_pred Hhc-----------ccCCCCcEEEEEeccccc
Q 010833 99 HVA-----------AHVPTTNITAIAVGSEVL 119 (499)
Q Consensus 99 ~v~-----------~y~p~~~I~~I~VGNEvl 119 (499)
.+. ..+ .. |+.-+-=||+.
T Consensus 133 ~~v~~F~~YA~~~~~~f-gd-Vk~W~T~NEP~ 162 (469)
T PRK13511 133 ENIDHFVRYAEFCFEEF-PE-VKYWTTFNEIG 162 (469)
T ss_pred HHHHHHHHHHHHHHHHh-CC-CCEEEEccchh
Confidence 221 112 34 88777778875
No 49
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=37.22 E-value=44 Score=35.27 Aligned_cols=34 Identities=21% Similarity=0.386 Sum_probs=31.0
Q ss_pred HHHHHHhCCCCEEEEccCC-HHHHHHHHhcCCEEE
Q 010833 41 VVALLKAQNIRHIRLYDAD-RAMLLALANTGIQVT 74 (499)
Q Consensus 41 vv~llk~~~i~~VRlYdad-~~vL~Ala~tgi~V~ 74 (499)
-.++|+.+||++||+..-+ |.=+.+|.+.||+|.
T Consensus 300 gaqIL~dLGi~~irLlTnn~p~K~~~L~~~GieV~ 334 (339)
T PRK09314 300 GAQILKYLGIKDIKLLSSSEDKEYVGLSGFGLNIV 334 (339)
T ss_pred HHHHHHHCCCCEEEECCCCChhhhhhHhhCCcEEE
Confidence 4779999999999999999 888889999999986
No 50
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=36.68 E-value=50 Score=35.53 Aligned_cols=38 Identities=34% Similarity=0.451 Sum_probs=33.8
Q ss_pred HHHHHhCCCCEEEEccCCHHHHHHHHhcCCEEEEecCC
Q 010833 42 VALLKAQNIRHIRLYDADRAMLLALANTGIQVTISVPN 79 (499)
Q Consensus 42 v~llk~~~i~~VRlYdad~~vL~Ala~tgi~V~vgV~n 79 (499)
.++|+.+||++||+..-+|.=+.+|.+.||+|.=-++.
T Consensus 320 AqIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vpl 357 (387)
T PRK09318 320 FQILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVPL 357 (387)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEecc
Confidence 67999999999999999999999999999999855553
No 51
>PRK08815 GTP cyclohydrolase; Provisional
Probab=36.17 E-value=51 Score=35.32 Aligned_cols=38 Identities=26% Similarity=0.367 Sum_probs=33.4
Q ss_pred HHHHHhCCCCEEEEccCCHHHHHHHHhcCCEEEEecCC
Q 010833 42 VALLKAQNIRHIRLYDADRAMLLALANTGIQVTISVPN 79 (499)
Q Consensus 42 v~llk~~~i~~VRlYdad~~vL~Ala~tgi~V~vgV~n 79 (499)
.|+|+.+||++||+..-+|.=+.+|.+.||+|.=-++.
T Consensus 305 AQIL~dLGV~kirLLTnnp~K~~~L~g~gieVv~~vp~ 342 (375)
T PRK08815 305 VAMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIRV 342 (375)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEecc
Confidence 67999999999999999998889999999999854543
No 52
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=35.70 E-value=50 Score=36.20 Aligned_cols=37 Identities=27% Similarity=0.439 Sum_probs=32.9
Q ss_pred HHHHHhCCCCEEEEccCCHHHHHHHHhcCCEEEEecC
Q 010833 42 VALLKAQNIRHIRLYDADRAMLLALANTGIQVTISVP 78 (499)
Q Consensus 42 v~llk~~~i~~VRlYdad~~vL~Ala~tgi~V~vgV~ 78 (499)
.++|+.+||++||+..-+|.=+.+|.+.||+|.=-++
T Consensus 373 AqIL~dLGI~~irLLTNNp~K~~~L~~~GieVve~vp 409 (450)
T PLN02831 373 AQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVVGRVP 409 (450)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 6799999999999999999999999999999984444
No 53
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=34.76 E-value=5.8e+02 Score=27.59 Aligned_cols=99 Identities=15% Similarity=0.108 Sum_probs=50.8
Q ss_pred HHHHHHHhcCCEEEEecCCCcccc----------------ccc-cHHHHHHHHHHHhcccCC--CCcEEEEEeccccccC
Q 010833 61 AMLLALANTGIQVTISVPNDQLLG----------------IGQ-SNATAANWVARHVAAHVP--TTNITAIAVGSEVLTV 121 (499)
Q Consensus 61 ~vL~Ala~tgi~V~vgV~n~~~~~----------------ia~-~~~~A~~Wv~~~v~~y~p--~~~I~~I~VGNEvl~~ 121 (499)
.+|+++++.|+..+++..|+-.-- +.. ....=...+.+-+ .|+. ..+|++|.-=||+-..
T Consensus 108 wfL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv-~~~~~~GI~f~~IsP~NEP~~~ 186 (384)
T PF14587_consen 108 WFLKAAKERGVNIFEAFSNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVV-KHYKKWGINFDYISPFNEPQWN 186 (384)
T ss_dssp HHHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHH-HHHHCTT--EEEEE--S-TTS-
T ss_pred HHHHHHHHcCCCeEEEeecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHH-HHHHhcCCccceeCCcCCCCCC
Confidence 589999999999999888852111 111 0111122232222 2222 5799999999999864
Q ss_pred ----CC----CChHHHHHHHHHHHHHHHhCCCCCceEEecccccccc
Q 010833 122 ----LP----NAGPVLVSALKFIHSALVAANLDDQIKVSTPHSSSII 160 (499)
Q Consensus 122 ----~~----~~~~~Ll~am~nv~~aL~~~gl~~~IkVsT~~s~~vl 160 (499)
.+ ....+....|+.++++|++.||..+|-+.-+..+..+
T Consensus 187 W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~Ea~~~~~l 233 (384)
T PF14587_consen 187 WAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACEAGDWEYL 233 (384)
T ss_dssp GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEEESSGGGG
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecchhhHHHH
Confidence 12 2355889999999999999999765444333333333
No 54
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=34.64 E-value=55 Score=35.38 Aligned_cols=38 Identities=26% Similarity=0.413 Sum_probs=33.1
Q ss_pred HHHHHHhCCCCEEEEccCCHHHHHHHHhcCCEEEEecC
Q 010833 41 VVALLKAQNIRHIRLYDADRAMLLALANTGIQVTISVP 78 (499)
Q Consensus 41 vv~llk~~~i~~VRlYdad~~vL~Ala~tgi~V~vgV~ 78 (499)
-.++|+.+||++||+..-+|.=+.+|.+.||+|.=-++
T Consensus 338 gaqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~~~v~ 375 (402)
T PRK09311 338 GAQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVTERVP 375 (402)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 36799999999999999999988999999999984444
No 55
>PRK09989 hypothetical protein; Provisional
Probab=34.48 E-value=4.5e+02 Score=25.74 Aligned_cols=51 Identities=8% Similarity=0.182 Sum_probs=39.2
Q ss_pred eeEEecCCCCCCCCHHHHHHHHHhCCCCEEEEc---cCC-HHHHHHHHhcCCEEEE
Q 010833 24 IGVNIGTDLSDMPSPTQVVALLKAQNIRHIRLY---DAD-RAMLLALANTGIQVTI 75 (499)
Q Consensus 24 iGvnYg~~~~n~p~~~~vv~llk~~~i~~VRlY---dad-~~vL~Ala~tgi~V~v 75 (499)
..+|.+..-.++ +..+.++.+++.|++.|-+. +.+ .++.+.++++||+|..
T Consensus 4 ~~~~~~~~~~~~-~l~~~l~~~~~~Gfd~VEl~~~~~~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 4 FAANLSMMFTEV-PFIERFAAARKAGFDAVEFLFPYDYSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred eeeehhhhhcCC-CHHHHHHHHHHcCCCEEEECCcccCCHHHHHHHHHHcCCcEEE
Confidence 466777665554 57789999999999999983 344 4677788899999886
No 56
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=34.42 E-value=3.7e+02 Score=29.10 Aligned_cols=60 Identities=18% Similarity=0.236 Sum_probs=32.7
Q ss_pred CCChHHHHHHHHHHHHHHHhCCCCCceEEecccccccccccCCCCcccccCCcchhhhhHHHHHHhcCCcccccccccc
Q 010833 123 PNAGPVLVSALKFIHSALVAANLDDQIKVSTPHSSSIILDSFPPSQAFFNRSWDPVMVPLLKFLQSTGSYLMLNVYPYY 201 (499)
Q Consensus 123 ~~~~~~Ll~am~nv~~aL~~~gl~~~IkVsT~~s~~vl~~s~pPS~~~F~~~~~~~l~~ll~fL~~t~s~~~vN~YPyf 201 (499)
..+.+.++.+++.+|++. . ++.+++..- .. +| + +-.+.+...++|+.+.+ +-.+++|+|-
T Consensus 268 ~~~~~~~~~~v~~lr~~~----~--~i~i~~d~I----vG-~P---g----Et~ed~~~tl~~i~~l~-~~~i~~f~ys 327 (440)
T PRK14334 268 EYRREKYLERIAEIREAL----P--DVVLSTDII----VG-FP---G----ETEEDFQETLSLYDEVG-YDSAYMFIYS 327 (440)
T ss_pred CCCHHHHHHHHHHHHHhC----C--CcEEEEeEE----EE-CC---C----CCHHHHHHHHHHHHhcC-CCEeeeeEee
Confidence 455667888888887763 2 244444322 11 33 1 11234566788887643 4456666543
No 57
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=34.20 E-value=1.6e+02 Score=30.21 Aligned_cols=80 Identities=16% Similarity=0.189 Sum_probs=44.5
Q ss_pred HHHHHhc--CCEEEEecCCC----ccccccccHHHHHHHHHHHhcccCCCCcEEEEEeccccccCCCCChHHHHHHHHHH
Q 010833 63 LLALANT--GIQVTISVPND----QLLGIGQSNATAANWVARHVAAHVPTTNITAIAVGSEVLTVLPNAGPVLVSALKFI 136 (499)
Q Consensus 63 L~Ala~t--gi~V~vgV~n~----~~~~ia~~~~~A~~Wv~~~v~~y~p~~~I~~I~VGNEvl~~~~~~~~~Ll~am~nv 136 (499)
|.++++. +++|++.|... ....+..+...-.++++ +|..+...-+..+|-+==|-..........++.-|+.+
T Consensus 57 ~~~l~~~~~~~kvl~svgg~~~s~~f~~~~~~~~~r~~fi~-~i~~~~~~~~~DGidiDwE~~~~~~~d~~~~~~ll~~l 135 (334)
T smart00636 57 LKALKKKNPGLKVLLSIGGWTESDNFSSMLSDPASRKKFID-SIVSFLKKYGFDGIDIDWEYPGARGDDRENYTALLKEL 135 (334)
T ss_pred HHHHHHhCCCCEEEEEEeCCCCCcchhHHHCCHHHHHHHHH-HHHHHHHHcCCCeEEECCcCCCCCccHHHHHHHHHHHH
Confidence 5566654 89999988652 23334444433333333 33333222245666664343322112344788899999
Q ss_pred HHHHHhC
Q 010833 137 HSALVAA 143 (499)
Q Consensus 137 ~~aL~~~ 143 (499)
|+.|.+.
T Consensus 136 r~~l~~~ 142 (334)
T smart00636 136 REALDKE 142 (334)
T ss_pred HHHHHHh
Confidence 9999864
No 58
>PLN00196 alpha-amylase; Provisional
Probab=34.11 E-value=1.7e+02 Score=31.89 Aligned_cols=55 Identities=27% Similarity=0.328 Sum_probs=37.6
Q ss_pred eeEEecCCCCCCCC---HHHHHHHHHhCCCCEE-----------------EEccCCH----------HHHHHHHhcCCEE
Q 010833 24 IGVNIGTDLSDMPS---PTQVVALLKAQNIRHI-----------------RLYDADR----------AMLLALANTGIQV 73 (499)
Q Consensus 24 iGvnYg~~~~n~p~---~~~vv~llk~~~i~~V-----------------RlYdad~----------~vL~Ala~tgi~V 73 (499)
.|++|-....+.-. -.+-+..|+++||+.| +.|+.|+ ++++++.+.||+|
T Consensus 29 Q~F~W~~~~~~gg~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkV 108 (428)
T PLN00196 29 QGFNWESWKQNGGWYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQV 108 (428)
T ss_pred EeeccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEE
Confidence 59998653333222 2344567888998877 4566652 5788888999999
Q ss_pred EEecC
Q 010833 74 TISVP 78 (499)
Q Consensus 74 ~vgV~ 78 (499)
++.+-
T Consensus 109 ilDvV 113 (428)
T PLN00196 109 IADIV 113 (428)
T ss_pred EEEEC
Confidence 99875
No 59
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=33.21 E-value=60 Score=36.52 Aligned_cols=39 Identities=23% Similarity=0.372 Sum_probs=34.3
Q ss_pred HHHHHHhCCCCEEEEccCCHHHHHHHHhcCCEEEEecCC
Q 010833 41 VVALLKAQNIRHIRLYDADRAMLLALANTGIQVTISVPN 79 (499)
Q Consensus 41 vv~llk~~~i~~VRlYdad~~vL~Ala~tgi~V~vgV~n 79 (499)
-.++|+.+||++||+..-+|.=+.+|++.||+|.=-+|.
T Consensus 342 gAQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvpl 380 (555)
T PRK09319 342 GAQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVPL 380 (555)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEecc
Confidence 367999999999999999999999999999999855553
No 60
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=32.69 E-value=1.9e+02 Score=34.19 Aligned_cols=97 Identities=16% Similarity=0.115 Sum_probs=62.3
Q ss_pred eeEEecCCCCCCC------CHHHHHHHHHhCCCCEEEEcc--CCHHHHHHHHhcCCEEEEecCCCc--cccccccHHHHH
Q 010833 24 IGVNIGTDLSDMP------SPTQVVALLKAQNIRHIRLYD--ADRAMLLALANTGIQVTISVPNDQ--LLGIGQSNATAA 93 (499)
Q Consensus 24 iGvnYg~~~~n~p------~~~~vv~llk~~~i~~VRlYd--ad~~vL~Ala~tgi~V~vgV~n~~--~~~ia~~~~~A~ 93 (499)
-|+|.-+...-+- .-.++++++|..+++.||+.. -++.-++.+-..||-|+--..... .+.--.-.+.+.
T Consensus 303 kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRtsHyP~~~~~ydLcDelGllV~~Ea~~~~~~~~~~~~~~k~~~ 382 (808)
T COG3250 303 RGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRTSHYPNSEEFYDLCDELGLLVIDEAMIETHGMPDDPEWRKEVS 382 (808)
T ss_pred eeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHhCcEEEEecchhhcCCCCCcchhHHHH
Confidence 3777766433211 145677888999999999983 236788888899999987665432 110011123344
Q ss_pred HHHHHHhcccCCCCcEEEEEecccccc
Q 010833 94 NWVARHVAAHVPTTNITAIAVGSEVLT 120 (499)
Q Consensus 94 ~Wv~~~v~~y~p~~~I~~I~VGNEvl~ 120 (499)
.-|++.|.+.--+..|.-=.+|||.-.
T Consensus 383 ~~i~~mver~knHPSIiiWs~gNE~~~ 409 (808)
T COG3250 383 EEVRRMVERDRNHPSIIIWSLGNESGH 409 (808)
T ss_pred HHHHHHHHhccCCCcEEEEeccccccC
Confidence 445666665544556888899999754
No 61
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=32.36 E-value=2.8e+02 Score=29.13 Aligned_cols=95 Identities=18% Similarity=0.115 Sum_probs=57.1
Q ss_pred CceeEEecCCCCCCCCHHHHHHHHHhCCCCEEEEccCCHHHHHHHHhcCCEEEEecCCCccccccccHHHHHHHHHHHhc
Q 010833 22 AFIGVNIGTDLSDMPSPTQVVALLKAQNIRHIRLYDADRAMLLALANTGIQVTISVPNDQLLGIGQSNATAANWVARHVA 101 (499)
Q Consensus 22 ~~iGvnYg~~~~n~p~~~~vv~llk~~~i~~VRlYdad~~vL~Ala~tgi~V~vgV~n~~~~~ia~~~~~A~~Wv~~~v~ 101 (499)
..+|||.-...++ |..++.++.+...++..|=+..-+|...+.++..||+|+.-|+.. ..|..+.+..+
T Consensus 56 kPfGVnl~~~~~~-~~~~~~l~vi~e~~v~~V~~~~G~P~~~~~lk~~Gi~v~~~v~s~---------~~A~~a~~~Ga- 124 (320)
T cd04743 56 KPWGVGILGFVDT-ELRAAQLAVVRAIKPTFALIAGGRPDQARALEAIGISTYLHVPSP---------GLLKQFLENGA- 124 (320)
T ss_pred CCeEEEEeccCCC-cchHHHHHHHHhcCCcEEEEcCCChHHHHHHHHCCCEEEEEeCCH---------HHHHHHHHcCC-
Confidence 4678887544322 334566777667788888666556766799999999999887642 33444444322
Q ss_pred ccCCCCcEEEEEeccccccC-CCCChHHHHHHHH
Q 010833 102 AHVPTTNITAIAVGSEVLTV-LPNAGPVLVSALK 134 (499)
Q Consensus 102 ~y~p~~~I~~I~VGNEvl~~-~~~~~~~Ll~am~ 134 (499)
+ .-|+-|.|.=-. .+.....|+|.+.
T Consensus 125 -----D--~vVaqG~EAGGH~G~~~t~~L~~~v~ 151 (320)
T cd04743 125 -----R--KFIFEGRECGGHVGPRSSFVLWESAI 151 (320)
T ss_pred -----C--EEEEecCcCcCCCCCCCchhhHHHHH
Confidence 1 236668887321 2223334566543
No 62
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=32.02 E-value=1.3e+02 Score=29.89 Aligned_cols=81 Identities=16% Similarity=0.105 Sum_probs=46.4
Q ss_pred HHHHHHHhcCCEEEEecCCCcc---ccccccHHHHHHHHHHHhcccCCCCcEEEEEeccccccCCCCChHHHHHHHHHHH
Q 010833 61 AMLLALANTGIQVTISVPNDQL---LGIGQSNATAANWVARHVAAHVPTTNITAIAVGSEVLTVLPNAGPVLVSALKFIH 137 (499)
Q Consensus 61 ~vL~Ala~tgi~V~vgV~n~~~---~~ia~~~~~A~~Wv~~~v~~y~p~~~I~~I~VGNEvl~~~~~~~~~Ll~am~nv~ 137 (499)
..+++++..|++|++.|..... ..+..++...+.++++ |..+...-.+.+|-+==|-.... ......-++.+|
T Consensus 50 ~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~~-lv~~~~~~~~DGIdiDwE~~~~~---~~~~~~fv~~Lr 125 (253)
T cd06545 50 SVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALVDK-IINYVVSYNLDGIDVDLEGPDVT---FGDYLVFIRALY 125 (253)
T ss_pred HHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHHHH-HHHHHHHhCCCceeEEeeccCcc---HhHHHHHHHHHH
Confidence 4566777789999998876432 2244454444444443 33332222344454433432211 345777899999
Q ss_pred HHHHhCCC
Q 010833 138 SALVAANL 145 (499)
Q Consensus 138 ~aL~~~gl 145 (499)
++|++.|+
T Consensus 126 ~~l~~~~~ 133 (253)
T cd06545 126 AALKKEGK 133 (253)
T ss_pred HHHhhcCc
Confidence 99987654
No 63
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.27 E-value=92 Score=29.45 Aligned_cols=59 Identities=14% Similarity=0.430 Sum_probs=39.7
Q ss_pred EEEEccCC-HHHHHHHH------hcCCEEEEecCCCccccccccHHHHHHHHHHHhcccCCCCcEEEEEecccc
Q 010833 52 HIRLYDAD-RAMLLALA------NTGIQVTISVPNDQLLGIGQSNATAANWVARHVAAHVPTTNITAIAVGSEV 118 (499)
Q Consensus 52 ~VRlYdad-~~vL~Ala------~tgi~V~vgV~n~~~~~ia~~~~~A~~Wv~~~v~~y~p~~~I~~I~VGNEv 118 (499)
.+.+||+. .+.++.+- ..|+-+|-.+.|++ ++ ++.+.|+.. | ..|.+.++..|.|||..
T Consensus 71 klQiwDTagqEryrtiTTayyRgamgfiLmyDitNee--Sf----~svqdw~tq-I-ktysw~naqvilvgnKC 136 (193)
T KOG0093|consen 71 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEE--SF----NSVQDWITQ-I-KTYSWDNAQVILVGNKC 136 (193)
T ss_pred EEEEEecccchhhhHHHHHHhhccceEEEEEecCCHH--HH----HHHHHHHHH-h-eeeeccCceEEEEeccc
Confidence 45578877 34444332 35778888888874 33 456788752 4 44588999999999976
No 64
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=29.25 E-value=1.1e+02 Score=26.72 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=29.4
Q ss_pred HHHHHHHHHhCCCCEEEEcc--CC---HHHHHHHHhcCCEEEE
Q 010833 38 PTQVVALLKAQNIRHIRLYD--AD---RAMLLALANTGIQVTI 75 (499)
Q Consensus 38 ~~~vv~llk~~~i~~VRlYd--ad---~~vL~Ala~tgi~V~v 75 (499)
.+++.+.++.+|++.|+++= .. ..+|++|+..||++.-
T Consensus 49 a~~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~~ 91 (108)
T TIGR03632 49 AEDAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVTS 91 (108)
T ss_pred HHHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEE
Confidence 35566778889999998883 33 5799999999998653
No 65
>PF14465 NFRKB_winged: NFRKB Winged Helix-like; PDB: 3U21_B.
Probab=28.09 E-value=46 Score=29.04 Aligned_cols=35 Identities=23% Similarity=0.541 Sum_probs=23.2
Q ss_pred ccCCcchhhhhHHHHHHhcCCcccccccccccccc
Q 010833 171 FNRSWDPVMVPLLKFLQSTGSYLMLNVYPYYDYMQ 205 (499)
Q Consensus 171 F~~~~~~~l~~ll~fL~~t~s~~~vN~YPyf~~~~ 205 (499)
+.+|+.+++.+.|+||+......--+.+||-++..
T Consensus 41 ~~pdWs~Lv~sAL~fLaG~~~~~p~~f~P~Ve~k~ 75 (100)
T PF14465_consen 41 LQPDWSELVQSALQFLAGESGDLPSEFVPYVEYKE 75 (100)
T ss_dssp G-S-CGGGHHHHHHHHTT-SS-S-TT---SEEEET
T ss_pred cCCCHHHHHHHHHHHhcCCCCCCCCCceeeeeecc
Confidence 56789999999999999877777778889888764
No 66
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=27.44 E-value=1.8e+02 Score=30.32 Aligned_cols=75 Identities=11% Similarity=0.159 Sum_probs=40.7
Q ss_pred cCCEEEEecCC--C---ccccccccHHHHHHHHHHHhcccCCCCcEEEEEeccccccC---CCCChHHHHHHHHHHHHHH
Q 010833 69 TGIQVTISVPN--D---QLLGIGQSNATAANWVARHVAAHVPTTNITAIAVGSEVLTV---LPNAGPVLVSALKFIHSAL 140 (499)
Q Consensus 69 tgi~V~vgV~n--~---~~~~ia~~~~~A~~Wv~~~v~~y~p~~~I~~I~VGNEvl~~---~~~~~~~Ll~am~nv~~aL 140 (499)
.+++|++.|-. . ....++++...-..+++. |..+...-++.+|-+==|-... .+.....++..|+.+|++|
T Consensus 69 p~lkvlisiGG~~~~~~~f~~~~~~~~~r~~fi~~-iv~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr~~l 147 (362)
T cd02872 69 PNLKTLLAIGGWNFGSAKFSAMAASPENRKTFIKS-AIAFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLLKELREAF 147 (362)
T ss_pred CCceEEEEEcCCCCCcchhHHHhCCHHHHHHHHHH-HHHHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 58999988843 2 223345555444444443 3333222234455443332211 1223457899999999999
Q ss_pred HhCC
Q 010833 141 VAAN 144 (499)
Q Consensus 141 ~~~g 144 (499)
.+.+
T Consensus 148 ~~~~ 151 (362)
T cd02872 148 EPEA 151 (362)
T ss_pred HhhC
Confidence 9873
No 67
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=27.43 E-value=1.4e+02 Score=27.01 Aligned_cols=43 Identities=26% Similarity=0.363 Sum_probs=34.2
Q ss_pred HHHHHHHHHhCCCCEEEEccC---------------------C--HHHHHHHHhcCCEEEEecCCC
Q 010833 38 PTQVVALLKAQNIRHIRLYDA---------------------D--RAMLLALANTGIQVTISVPND 80 (499)
Q Consensus 38 ~~~vv~llk~~~i~~VRlYda---------------------d--~~vL~Ala~tgi~V~vgV~n~ 80 (499)
|++.++.||..+++.|-+|.- | .++++|+...||+|++-+.-.
T Consensus 2 ~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 2 PEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeee
Confidence 678888888888888888643 1 378999999999999887643
No 68
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=26.65 E-value=4.8e+02 Score=28.19 Aligned_cols=62 Identities=15% Similarity=0.219 Sum_probs=34.4
Q ss_pred CCChHHHHHHHHHHHHHHHhCCCCCceEEecccccccccccCCCCcccccCCcchhhhhHHHHHHhcCCccccccccccc
Q 010833 123 PNAGPVLVSALKFIHSALVAANLDDQIKVSTPHSSSIILDSFPPSQAFFNRSWDPVMVPLLKFLQSTGSYLMLNVYPYYD 202 (499)
Q Consensus 123 ~~~~~~Ll~am~nv~~aL~~~gl~~~IkVsT~~s~~vl~~s~pPS~~~F~~~~~~~l~~ll~fL~~t~s~~~vN~YPyf~ 202 (499)
..+....+.+++.+++++. .+.+++.. +.. || + +-.+.+...++|+.+.. +-.+++++|--
T Consensus 278 ~~~~~~~~~~i~~lr~~~~------~i~i~~d~----IvG-~P---g----ET~ed~~~tl~~i~~l~-~~~~~~~~~sp 338 (439)
T PRK14328 278 HYTREYYLELVEKIKSNIP------DVAITTDI----IVG-FP---G----ETEEDFEETLDLVKEVR-YDSAFTFIYSK 338 (439)
T ss_pred CCCHHHHHHHHHHHHHhCC------CCEEEEEE----EEE-CC---C----CCHHHHHHHHHHHHhcC-CCcccceEecC
Confidence 4556778888888877632 25454432 221 33 1 11245667788887653 44567776554
Q ss_pred c
Q 010833 203 Y 203 (499)
Q Consensus 203 ~ 203 (499)
.
T Consensus 339 ~ 339 (439)
T PRK14328 339 R 339 (439)
T ss_pred C
Confidence 3
No 69
>PRK07198 hypothetical protein; Validated
Probab=26.45 E-value=60 Score=35.03 Aligned_cols=38 Identities=32% Similarity=0.374 Sum_probs=33.5
Q ss_pred HHHHHhCCCCEE-EEccCCHHHHHHHHhcCCEEEEecCC
Q 010833 42 VALLKAQNIRHI-RLYDADRAMLLALANTGIQVTISVPN 79 (499)
Q Consensus 42 v~llk~~~i~~V-RlYdad~~vL~Ala~tgi~V~vgV~n 79 (499)
.++|+.+||++| |+...++.=+.+|.+.||+|.=-++.
T Consensus 338 AQILrdLGV~Km~RLLTNnp~K~~gL~GfGLEVVErVpl 376 (418)
T PRK07198 338 PDVLHWLGIRRIHRLVSMSNMKYDAITGSGIEVGERVPI 376 (418)
T ss_pred HHHHHHhCCChhhhhcCCCHHHHHHHHhCCCEEEEEecc
Confidence 678999999999 99999998899999999999866653
No 70
>COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=25.93 E-value=1.9e+02 Score=30.46 Aligned_cols=77 Identities=18% Similarity=0.127 Sum_probs=52.9
Q ss_pred HHHHHHHHhcCCEEEEecCCCccccccccHHHHHHHHHHHhcccCCCCcEEEEEeccccccCCCCChHHHHHHHHHHHHH
Q 010833 60 RAMLLALANTGIQVTISVPNDQLLGIGQSNATAANWVARHVAAHVPTTNITAIAVGSEVLTVLPNAGPVLVSALKFIHSA 139 (499)
Q Consensus 60 ~~vL~Ala~tgi~V~vgV~n~~~~~ia~~~~~A~~Wv~~~v~~y~p~~~I~~I~VGNEvl~~~~~~~~~Ll~am~nv~~a 139 (499)
.+||+++-.+|=-+.+|=.- .. .-.++.|.+|+...+.+++. +|.+++.-|.-+.. -+-++
T Consensus 175 m~VLkp~idsGkik~~Ge~~--~d--~W~ps~Aq~~men~lta~~~--~vdaVvA~nDgtag-------------GaI~a 235 (341)
T COG4213 175 MKVLKPLIDSGKIKVVGEQW--TD--GWLPSNAQQIMENLLTANYN--DIDAVVAPNDGTAG-------------GAIAA 235 (341)
T ss_pred HHHHHHHhhCCceEEeeecc--cc--ccCHHHHHHHHHHHHhcccC--ceeEEEcCCCchhH-------------HHHHH
Confidence 47899888888444466332 22 34678899999999998854 58888877753222 12367
Q ss_pred HHhCCCCCceEEeccc
Q 010833 140 LVAANLDDQIKVSTPH 155 (499)
Q Consensus 140 L~~~gl~~~IkVsT~~ 155 (499)
|++.||.++++||=-+
T Consensus 236 L~a~Gl~g~vpVsGQD 251 (341)
T COG4213 236 LKAQGLAGKVPVSGQD 251 (341)
T ss_pred HHhcccCCCCcccCcc
Confidence 8889999889876443
No 71
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=25.89 E-value=2.8e+02 Score=25.04 Aligned_cols=45 Identities=13% Similarity=0.273 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHhCCCCEEEEccCC-------HHHHHHHHhc---CCEEEEe--cCCC
Q 010833 36 PSPTQVVALLKAQNIRHIRLYDAD-------RAMLLALANT---GIQVTIS--VPND 80 (499)
Q Consensus 36 p~~~~vv~llk~~~i~~VRlYdad-------~~vL~Ala~t---gi~V~vg--V~n~ 80 (499)
-+++++++..++.+.+.|=+-..+ +.++++|+.. .++|++| ++.+
T Consensus 40 ~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~ 96 (132)
T TIGR00640 40 QTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQ 96 (132)
T ss_pred CCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChH
Confidence 467788887777777777776655 4677777765 4678888 5543
No 72
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=25.87 E-value=97 Score=32.12 Aligned_cols=219 Identities=17% Similarity=0.168 Sum_probs=108.2
Q ss_pred HHHHHHHhcCCEEE--EecCCCcccc----c---cc-----cHHHHHHHHHHHhcccCCC-CcEEEEEeccccccCCC--
Q 010833 61 AMLLALANTGIQVT--ISVPNDQLLG----I---GQ-----SNATAANWVARHVAAHVPT-TNITAIAVGSEVLTVLP-- 123 (499)
Q Consensus 61 ~vL~Ala~tgi~V~--vgV~n~~~~~----i---a~-----~~~~A~~Wv~~~v~~y~p~-~~I~~I~VGNEvl~~~~-- 123 (499)
.++.-+...||+|- .=||-...+. . .. -.+...++|++-+..| .+ .+|...=|=||++..+.
T Consensus 63 ~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~~~~~~~~~~~~~~~l~~~I~~v~~~y-~~~g~i~~WDVvNE~i~~~~~~ 141 (320)
T PF00331_consen 63 AILDWARENGIKVRGHTLVWHSQTPDWVFNLANGSPDEKEELRARLENHIKTVVTRY-KDKGRIYAWDVVNEAIDDDGNP 141 (320)
T ss_dssp HHHHHHHHTT-EEEEEEEEESSSS-HHHHTSTTSSBHHHHHHHHHHHHHHHHHHHHT-TTTTTESEEEEEES-B-TTSSS
T ss_pred HHHHHHHhcCcceeeeeEEEcccccceeeeccCCCcccHHHHHHHHHHHHHHHHhHh-ccccceEEEEEeeecccCCCcc
Confidence 46666777888765 2334433222 1 10 1234556676655554 44 48999999999997643
Q ss_pred -----CCh------HHHHHHHHHHHHHHHhCCCCCceEEecccccccccccCCCCcccccCCcchhhhhHHHHHHhcCCc
Q 010833 124 -----NAG------PVLVSALKFIHSALVAANLDDQIKVSTPHSSSIILDSFPPSQAFFNRSWDPVMVPLLKFLQSTGSY 192 (499)
Q Consensus 124 -----~~~------~~Ll~am~nv~~aL~~~gl~~~IkVsT~~s~~vl~~s~pPS~~~F~~~~~~~l~~ll~fL~~t~s~ 192 (499)
... .++..+.+-.|++..+ +|.-.-+ .+++. +.-...+..|++.|.+.+-|
T Consensus 142 ~~~r~~~~~~~lG~~yi~~aF~~A~~~~P~------a~L~~ND-y~~~~-----------~~k~~~~~~lv~~l~~~gvp 203 (320)
T PF00331_consen 142 GGLRDSPWYDALGPDYIADAFRAAREADPN------AKLFYND-YNIES-----------PAKRDAYLNLVKDLKARGVP 203 (320)
T ss_dssp SSBCTSHHHHHHTTCHHHHHHHHHHHHHTT------SEEEEEE-SSTTS-----------THHHHHHHHHHHHHHHTTHC
T ss_pred ccccCChhhhcccHhHHHHHHHHHHHhCCC------cEEEecc-ccccc-----------hHHHHHHHHHHHHHHhCCCc
Confidence 112 2566677777777653 3332211 11111 00123355677777665444
Q ss_pred cccccccccccccCCCCcCcccccccCCCCCCceecCCCccccccHHHHHHHHHHHHHHhcCCCCccEEEEeeccCCCCC
Q 010833 193 LMLNVYPYYDYMQSNGVIPLDYALFRPLPPNKEAVDANTLLHYTNVFDAIVDAAYFAMSDLNFTNIPLVVLESGWPSKGD 272 (499)
Q Consensus 193 ~~vN~YPyf~~~~~~~~i~ld~AlF~~~~~~~~~~d~~~~~~Y~n~fDa~~Dav~~am~~~g~~~v~vvVtETGWPS~G~ 272 (499)
+ |=-=|| +..... +. .+.+..+|+++.--+++|.|||-.=.....
T Consensus 204 I-------------------dgIG~Q------~H~~~~----~~------~~~i~~~l~~~~~~Gl~i~ITElDv~~~~~ 248 (320)
T PF00331_consen 204 I-------------------DGIGLQ------SHFDAG----YP------PEQIWNALDRFASLGLPIHITELDVRDDDN 248 (320)
T ss_dssp S--------------------EEEEE------EEEETT----SS------HHHHHHHHHHHHTTTSEEEEEEEEEESSST
T ss_pred c-------------------ceechh------hccCCC----CC------HHHHHHHHHHHHHcCCceEEEeeeecCCCC
Confidence 2 111111 111111 11 333444455554456899999986443332
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHccCCCCCCCCCceeEEE-EEeecCC-CCCCCCCCcccccccCCCCcee
Q 010833 273 SSESDATIDNANTYNSNLIRHVLNNTGTPKHPGIAVSTYI-YELYNED-LRPGSVSEKNWGLFNANGVPVY 341 (499)
Q Consensus 273 ~~~~~As~~na~~y~~~li~~~~s~~GTP~rp~~~~~~yi-FelFdE~-~K~g~~~E~~wGlf~~dgtpky 341 (499)
... .+..+.++.+++.+++.+.+.. |. .+..+. ..+.|.. |.+... ..+=+||+.|.+||-
T Consensus 249 ~~~-~~~~~~qA~~~~~~~~~~~~~~-----~~-~v~git~Wg~~D~~sW~~~~~-~~~~~lfd~~~~~Kp 311 (320)
T PF00331_consen 249 PPD-AEEEEAQAEYYRDFLTACFSHP-----PA-AVEGITWWGFTDGYSWRPDTP-PDRPLLFDEDYQPKP 311 (320)
T ss_dssp TSC-HHHHHHHHHHHHHHHHHHHHTT-----HC-TEEEEEESSSBTTGSTTGGHS-EG--SSB-TTSBB-H
T ss_pred Ccc-hHHHHHHHHHHHHHHHHHHhCC-----cc-CCCEEEEECCCCCCcccCCCC-CCCCeeECCCcCCCH
Confidence 111 2446677888899999887631 01 243443 3444533 554311 122378999998884
No 73
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=25.04 E-value=88 Score=34.04 Aligned_cols=22 Identities=14% Similarity=0.095 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHhCCCCC
Q 010833 126 GPVLVSALKFIHSALVAANLDD 147 (499)
Q Consensus 126 ~~~Ll~am~nv~~aL~~~gl~~ 147 (499)
....+.-++.+.+.|.++|+..
T Consensus 262 ~~~~~~~~~~~~~~L~~~Gy~~ 283 (453)
T PRK13347 262 AEERLRQARAVADRLLAAGYVP 283 (453)
T ss_pred HHHHHHHHHHHHHHHHHCCCEE
Confidence 3466777788999999999964
No 74
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=25.03 E-value=2.5e+02 Score=22.72 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=34.9
Q ss_pred HHHHHHHHHhCCCCEEEEccCCHHHHHHHHhcCCEEEEe
Q 010833 38 PTQVVALLKAQNIRHIRLYDADRAMLLALANTGIQVTIS 76 (499)
Q Consensus 38 ~~~vv~llk~~~i~~VRlYdad~~vL~Ala~tgi~V~vg 76 (499)
..+.+++|...+++.|=.-..-+...+.|...||+|+.+
T Consensus 42 ~~~~~~~l~~~~v~~li~~~iG~~~~~~L~~~gI~v~~~ 80 (94)
T PF02579_consen 42 GDKIAKFLAEEGVDVLICGGIGEGAFRALKEAGIKVYQG 80 (94)
T ss_dssp STHHHHHHHHTTESEEEESCSCHHHHHHHHHTTSEEEES
T ss_pred chhHHHHHHHcCCCEEEEeCCCHHHHHHHHHCCCEEEEc
Confidence 567888888899999977788899999999999999999
No 75
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=24.21 E-value=1.8e+02 Score=31.67 Aligned_cols=92 Identities=18% Similarity=0.201 Sum_probs=50.8
Q ss_pred HHHHHH----HHHhCCCCEEEEccCC------HHHHHHHHhcCCEEEEecCCCccccccccHHHHHHHHHHHhcccCCCC
Q 010833 38 PTQVVA----LLKAQNIRHIRLYDAD------RAMLLALANTGIQVTISVPNDQLLGIGQSNATAANWVARHVAAHVPTT 107 (499)
Q Consensus 38 ~~~vv~----llk~~~i~~VRlYdad------~~vL~Ala~tgi~V~vgV~n~~~~~ia~~~~~A~~Wv~~~v~~y~p~~ 107 (499)
+++||+ ..-.+||+.+|+||+- ...++|.+++|..+-..+...--+ + -..+.|++-. +-+-.-
T Consensus 96 aDDvVe~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT~sP-v----Ht~e~yv~~a--kel~~~ 168 (472)
T COG5016 96 ADDVVEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYTTSP-V----HTLEYYVELA--KELLEM 168 (472)
T ss_pred chHHHHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEeccCC-c----ccHHHHHHHH--HHHHHc
Confidence 456655 3335899999999975 356888899998776666543211 1 2234555321 111122
Q ss_pred cEEEEEeccccccCCCCChHHHHHHHHHH
Q 010833 108 NITAIAVGSEVLTVLPNAGPVLVSALKFI 136 (499)
Q Consensus 108 ~I~~I~VGNEvl~~~~~~~~~Ll~am~nv 136 (499)
.+..|++-.=.=.-.+..+.+|+.+||..
T Consensus 169 g~DSIciKDmaGlltP~~ayelVk~iK~~ 197 (472)
T COG5016 169 GVDSICIKDMAGLLTPYEAYELVKAIKKE 197 (472)
T ss_pred CCCEEEeecccccCChHHHHHHHHHHHHh
Confidence 34555553211111344566777777654
No 76
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=23.86 E-value=1.2e+02 Score=31.49 Aligned_cols=80 Identities=18% Similarity=0.258 Sum_probs=50.6
Q ss_pred CCcEEEEEecccccc--C--CC----CChHHHHHHHHHHHHHHHhCCCCCceEEecccccccccccCCCCcc----cccC
Q 010833 106 TTNITAIAVGSEVLT--V--LP----NAGPVLVSALKFIHSALVAANLDDQIKVSTPHSSSIILDSFPPSQA----FFNR 173 (499)
Q Consensus 106 ~~~I~~I~VGNEvl~--~--~~----~~~~~Ll~am~nv~~aL~~~gl~~~IkVsT~~s~~vl~~s~pPS~~----~F~~ 173 (499)
...|..++||+|--. + +. -....|...+..||+.| +..+|||++-.++.+.. +.|..| .|+-
T Consensus 17 aggVdaF~IGSEl~gLT~iR~~~~~fPaV~~l~~LAa~VR~il-----G~~~kitYAADWsEY~~-~~p~dg~gd~~f~L 90 (299)
T PF13547_consen 17 AGGVDAFCIGSELRGLTRIRDGAGSFPAVEALRALAADVRAIL-----GPGTKITYAADWSEYFG-YQPADGSGDVYFHL 90 (299)
T ss_pred cCCCcEEEEchhhhhheeecCCCCCCcHHHHHHHHHHHHHHHh-----CCCceEEEeccCHHhcC-cCCCCCCCcccccC
Confidence 457899999999652 2 21 12346777777888776 23589999999988765 334433 3332
Q ss_pred CcchhhhhHHHHHHhcCCcccccccc
Q 010833 174 SWDPVMVPLLKFLQSTGSYLMLNVYP 199 (499)
Q Consensus 174 ~~~~~l~~ll~fL~~t~s~~~vN~YP 199 (499)
| ||. -....|+++|+.|.
T Consensus 91 D------pLW--a~~~IDfIGID~Y~ 108 (299)
T PF13547_consen 91 D------PLW--ADPNIDFIGIDNYF 108 (299)
T ss_pred c------ccc--cCCcCCEEEeeccc
Confidence 1 221 12356788888874
No 77
>PRK09004 FMN-binding protein MioC; Provisional
Probab=23.33 E-value=5.6e+02 Score=23.21 Aligned_cols=113 Identities=13% Similarity=0.116 Sum_probs=63.9
Q ss_pred ceeEEecCCCCCCC-CHHHHHHHHHhCCCCEEEEccCCHHHHHHHHhcCCEEEEecCCCccccccccHHHHHHHHHHHhc
Q 010833 23 FIGVNIGTDLSDMP-SPTQVVALLKAQNIRHIRLYDADRAMLLALANTGIQVTISVPNDQLLGIGQSNATAANWVARHVA 101 (499)
Q Consensus 23 ~iGvnYg~~~~n~p-~~~~vv~llk~~~i~~VRlYdad~~vL~Ala~tgi~V~vgV~n~~~~~ia~~~~~A~~Wv~~~v~ 101 (499)
.+.|-||....|-- -.+++.+.+++.|++ +++++.+. +..+.+.. .|+++++.......-.+...--.|++.. .
T Consensus 3 ~i~I~ygS~tGnae~~A~~l~~~~~~~g~~-~~~~~~~~--~~~l~~~~-~li~~~sT~G~Ge~p~~~~~f~~~L~~~-~ 77 (146)
T PRK09004 3 DITLISGSTLGGAEYVADHLAEKLEEAGFS-TETLHGPL--LDDLSASG-LWLIVTSTHGAGDLPDNLQPFFEELQEQ-K 77 (146)
T ss_pred eEEEEEEcCchHHHHHHHHHHHHHHHcCCc-eEEeccCC--HHHhccCC-eEEEEECCCCCCCCChhHHHHHHHHHhc-C
Confidence 46788887654422 245566677777764 45665542 34455443 4777777653222222223333455542 2
Q ss_pred ccCCCCcEEEEEeccccccCCCCChHHHHHHHHHHHHHHHhCCCCC
Q 010833 102 AHVPTTNITAIAVGSEVLTVLPNAGPVLVSALKFIHSALVAANLDD 147 (499)
Q Consensus 102 ~y~p~~~I~~I~VGNEvl~~~~~~~~~Ll~am~nv~~aL~~~gl~~ 147 (499)
+.++..++..+-.||-. -+.-=.+++++.+.|.+.|-.+
T Consensus 78 ~~l~g~~~aVfGlGds~-------Y~~fc~~~~~ld~~l~~lGa~~ 116 (146)
T PRK09004 78 PDLSQVRFAAIGIGSSE-------YDTFCGAIDKLEQLLKAKGAKQ 116 (146)
T ss_pred CCCCCCEEEEEeecCCC-------HHHHhHHHHHHHHHHHHcCCeE
Confidence 23445556556666643 1355678899999999987643
No 78
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=22.70 E-value=1.3e+02 Score=26.28 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=28.3
Q ss_pred HHHHHHHHhCCCCEEEEcc--CC---HHHHHHHHhcCCEEEE
Q 010833 39 TQVVALLKAQNIRHIRLYD--AD---RAMLLALANTGIQVTI 75 (499)
Q Consensus 39 ~~vv~llk~~~i~~VRlYd--ad---~~vL~Ala~tgi~V~v 75 (499)
+.+.+.++.+|++.|+++= .. ..+|++|+.+|++|.-
T Consensus 50 ~~~~~~~~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~ 91 (110)
T PF00411_consen 50 EKIAKKAKELGIKTVRVKIKGFGPGREAALKALKKSGLKIVS 91 (110)
T ss_dssp HHHHHHHHCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEE
Confidence 4556677788999888883 32 4799999999998654
No 79
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=22.64 E-value=1.7e+02 Score=26.18 Aligned_cols=38 Identities=18% Similarity=0.271 Sum_probs=29.1
Q ss_pred HHHHHHHHHhCCCCEEEEcc----------CC---HHHHHHHHhcCCEEEE
Q 010833 38 PTQVVALLKAQNIRHIRLYD----------AD---RAMLLALANTGIQVTI 75 (499)
Q Consensus 38 ~~~vv~llk~~~i~~VRlYd----------ad---~~vL~Ala~tgi~V~v 75 (499)
.+++.+.++++|++.|+++- .. ...|++|+.+||+|..
T Consensus 52 a~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~ 102 (114)
T TIGR03628 52 AGRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGR 102 (114)
T ss_pred HHHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEE
Confidence 45667778889999888773 22 4799999999999753
No 80
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=22.36 E-value=1.1e+03 Score=26.23 Aligned_cols=154 Identities=15% Similarity=0.159 Sum_probs=88.3
Q ss_pred ceeEEecCCCCCCCC----HHHHHHHHHhCCCCEEEEccCC-----------------------------------HHHH
Q 010833 23 FIGVNIGTDLSDMPS----PTQVVALLKAQNIRHIRLYDAD-----------------------------------RAML 63 (499)
Q Consensus 23 ~iGvnYg~~~~n~p~----~~~vv~llk~~~i~~VRlYdad-----------------------------------~~vL 63 (499)
..+.-|=+ ++..|. .++|+++||.+.+..+|-=.-+ .+-+
T Consensus 33 vY~Giyep-d~p~~d~~G~RkDVle~lk~Lk~P~lR~PGGnFvs~Y~WeDGIGP~e~Rp~rldlaW~t~EtN~~Gt~EF~ 111 (501)
T COG3534 33 VYEGIYEP-DSPIADERGFRKDVLEALKDLKIPVLRWPGGNFVSGYHWEDGIGPREERPRRLDLAWGTTETNEFGTHEFM 111 (501)
T ss_pred eeeeeecC-CCCCcchhhhHHHHHHHHHhcCCceeecCCcccccccccccCcCchhhCchhhcccccccccccccHHHHH
Confidence 34555656 444443 6889999999999888853211 2567
Q ss_pred HHHHhcCCEEEEecCCCccccccccHHHHHHHHHHH------------hcccC--CCCcEEEEEecccc---ccCCCCCh
Q 010833 64 LALANTGIQVTISVPNDQLLGIGQSNATAANWVARH------------VAAHV--PTTNITAIAVGSEV---LTVLPNAG 126 (499)
Q Consensus 64 ~Ala~tgi~V~vgV~n~~~~~ia~~~~~A~~Wv~~~------------v~~y~--p~~~I~~I~VGNEv---l~~~~~~~ 126 (499)
.-+...|.+.++.|.... ...+.|..||.=- ...-+ |+ +|++..+|||- -.=....+
T Consensus 112 ~~~e~iGaep~~avN~Gs-----rgvd~ar~~vEY~n~pggtywsdlR~~~G~~~P~-nvK~w~lGNEm~GpWq~G~~~a 185 (501)
T COG3534 112 DWCELIGAEPYIAVNLGS-----RGVDEARNWVEYCNHPGGTYWSDLRRENGREEPW-NVKYWGLGNEMDGPWQCGHKTA 185 (501)
T ss_pred HHHHHhCCceEEEEecCC-----ccHHHHHHHHHHccCCCCChhHHHHHhcCCCCCc-ccceEEeccccCCCcccccccC
Confidence 777788999998886543 3457788887511 00001 34 89999999998 32233445
Q ss_pred HHHHHHHHHHHHHHHhCCC-CCceEEecccccccccccCCCCcccccCCcch-hhhhHHHHHHhcCCccccccc
Q 010833 127 PVLVSALKFIHSALVAANL-DDQIKVSTPHSSSIILDSFPPSQAFFNRSWDP-VMVPLLKFLQSTGSYLMLNVY 198 (499)
Q Consensus 127 ~~Ll~am~nv~~aL~~~gl-~~~IkVsT~~s~~vl~~s~pPS~~~F~~~~~~-~l~~ll~fL~~t~s~~~vN~Y 198 (499)
++-..+..+.+++.+=..- ...+-+..+.... .+.++|.. +|..- .+..|++.++-|
T Consensus 186 ~EY~~~A~e~~k~~k~~d~t~e~~v~g~a~~~n-----------~~~~~W~~~vl~~~----~e~vD~ISlH~Y 244 (501)
T COG3534 186 PEYGRLANEYRKYMKYFDPTIENVVCGSANGAN-----------PTDPNWEAVVLEEA----YERVDYISLHYY 244 (501)
T ss_pred HHHHHHHHHHHHHHhhcCccccceEEeecCCCC-----------CCchHHHHHHHHHH----hhhcCeEEEEEe
Confidence 5444455555555542111 1113233332211 12334543 33332 334788888888
No 81
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=22.19 E-value=5.9e+02 Score=27.35 Aligned_cols=63 Identities=17% Similarity=0.313 Sum_probs=35.9
Q ss_pred CCChHHHHHHHHHHHHHHHhCCCCCceEEecccccccccccCCCCcccccCCcchhhhhHHHHHHhcCCccccccccccc
Q 010833 123 PNAGPVLVSALKFIHSALVAANLDDQIKVSTPHSSSIILDSFPPSQAFFNRSWDPVMVPLLKFLQSTGSYLMLNVYPYYD 202 (499)
Q Consensus 123 ~~~~~~Ll~am~nv~~aL~~~gl~~~IkVsT~~s~~vl~~s~pPS~~~F~~~~~~~l~~ll~fL~~t~s~~~vN~YPyf~ 202 (499)
..+...++.+++.+|++.. .+.|++.. +. .|| + +-.+.+...++|+.+.. +-.+++++|--
T Consensus 266 ~~~~~~~~~~i~~l~~~~~------~i~i~~~~----I~-G~P---g----ET~e~~~~t~~fl~~~~-~~~~~~~~~sp 326 (430)
T TIGR01125 266 PGSGEQQLDFIERLREKCP------DAVLRTTF----IV-GFP---G----ETEEDFQELLDFVEEGQ-FDRLGAFTYSP 326 (430)
T ss_pred CCCHHHHHHHHHHHHHhCC------CCeEeEEE----EE-ECC---C----CCHHHHHHHHHHHHhcC-CCEEeeeeccC
Confidence 4456678888888887631 24444432 21 132 1 12345677889987653 45567776655
Q ss_pred cc
Q 010833 203 YM 204 (499)
Q Consensus 203 ~~ 204 (499)
+-
T Consensus 327 ~p 328 (430)
T TIGR01125 327 EE 328 (430)
T ss_pred CC
Confidence 53
No 82
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=22.15 E-value=7.5e+02 Score=24.19 Aligned_cols=87 Identities=16% Similarity=0.313 Sum_probs=56.1
Q ss_pred CHHHHHHHHHhCCCCEEEEccCC---HHHHHHHHh--cCCEEEEecCCCccccccccHHHHHHHHHHHhcccCCCCcEEE
Q 010833 37 SPTQVVALLKAQNIRHIRLYDAD---RAMLLALAN--TGIQVTISVPNDQLLGIGQSNATAANWVARHVAAHVPTTNITA 111 (499)
Q Consensus 37 ~~~~vv~llk~~~i~~VRlYdad---~~vL~Ala~--tgi~V~vgV~n~~~~~ia~~~~~A~~Wv~~~v~~y~p~~~I~~ 111 (499)
+|+|+.+.++ .|.+.|++|-++ ++-++++++ .+++++. ... + +..++.+|++. .+.+
T Consensus 118 T~~E~~~A~~-~Gad~vklFPa~~~G~~~ik~l~~~~p~ip~~a---tGG---I--~~~N~~~~l~a---------Ga~~ 179 (213)
T PRK06552 118 TVTEIVTALE-AGSEIVKLFPGSTLGPSFIKAIKGPLPQVNVMV---TGG---V--NLDNVKDWFAA---------GADA 179 (213)
T ss_pred CHHHHHHHHH-cCCCEEEECCcccCCHHHHHHHhhhCCCCEEEE---ECC---C--CHHHHHHHHHC---------CCcE
Confidence 5888888774 789999999666 577888775 2355442 112 2 23456667653 5678
Q ss_pred EEeccccccCC-CCChHHHHHHHHHHHHHHH
Q 010833 112 IAVGSEVLTVL-PNAGPVLVSALKFIHSALV 141 (499)
Q Consensus 112 I~VGNEvl~~~-~~~~~~Ll~am~nv~~aL~ 141 (499)
+.||+..+... ...+..+-...+.++++++
T Consensus 180 vavgs~l~~~~~~~~~~~i~~~a~~~~~~~~ 210 (213)
T PRK06552 180 VGIGGELNKLASQGDFDLITEKAKKYMSSLR 210 (213)
T ss_pred EEEchHHhCccccCCHHHHHHHHHHHHHHHH
Confidence 99998876431 2345667777777766665
No 83
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.15 E-value=1.9e+02 Score=28.49 Aligned_cols=80 Identities=18% Similarity=0.405 Sum_probs=50.8
Q ss_pred cCCceeEEecCCCCCCCCHHHHHHHHHhCCCCEEEEccCC-----HHHHHHHHh--cCCEEEEecCCCccccccccHHHH
Q 010833 20 KDAFIGVNIGTDLSDMPSPTQVVALLKAQNIRHIRLYDAD-----RAMLLALAN--TGIQVTISVPNDQLLGIGQSNATA 92 (499)
Q Consensus 20 ~~~~iGvnYg~~~~n~p~~~~vv~llk~~~i~~VRlYdad-----~~vL~Ala~--tgi~V~vgV~n~~~~~ia~~~~~A 92 (499)
....+||.+-...-.++. .--+++|||+- ..+.++... .|+=++..|-|+. + -...
T Consensus 41 ~~sTiGIDFk~kti~l~g-----------~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~--S----feni 103 (207)
T KOG0078|consen 41 FISTIGIDFKIKTIELDG-----------KKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEK--S----FENI 103 (207)
T ss_pred ccceEEEEEEEEEEEeCC-----------eEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchH--H----HHHH
Confidence 345577777655444443 12467788876 467777664 4555666665542 3 3456
Q ss_pred HHHHHHHhcccCCCCcEEEEEecccc
Q 010833 93 ANWVARHVAAHVPTTNITAIAVGSEV 118 (499)
Q Consensus 93 ~~Wv~~~v~~y~p~~~I~~I~VGNEv 118 (499)
..|++ +|..+-+. .|.-|.|||-.
T Consensus 104 ~~W~~-~I~e~a~~-~v~~~LvGNK~ 127 (207)
T KOG0078|consen 104 RNWIK-NIDEHASD-DVVKILVGNKC 127 (207)
T ss_pred HHHHH-HHHhhCCC-CCcEEEeeccc
Confidence 67886 67777664 78899999954
No 84
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=21.74 E-value=1.7e+02 Score=28.55 Aligned_cols=40 Identities=30% Similarity=0.396 Sum_probs=35.8
Q ss_pred HHHHHhCCCCEEEEccCCHHHHHHHHhcCCEEEEecCCCc
Q 010833 42 VALLKAQNIRHIRLYDADRAMLLALANTGIQVTISVPNDQ 81 (499)
Q Consensus 42 v~llk~~~i~~VRlYdad~~vL~Ala~tgi~V~vgV~n~~ 81 (499)
.++|+..||++||+-..+|.=..++.+.||+|.=-++...
T Consensus 133 AqIL~dLGI~~irLLtnnp~K~~~l~~~Gi~vverv~~~~ 172 (193)
T COG0807 133 AQILKDLGIKKIRLLTNNPRKIYGLEGFGINVVERVPLIV 172 (193)
T ss_pred HHHHHHcCCcEEEEecCChHHHHHHHhCCceEEEEeecCC
Confidence 5689999999999999999889999999999998888754
No 85
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=21.39 E-value=3.4e+02 Score=30.99 Aligned_cols=43 Identities=16% Similarity=0.199 Sum_probs=30.8
Q ss_pred HHHHHH----HHHhCCCCEEEEccCC------HHHHHHHHhcCCEEEEecCCC
Q 010833 38 PTQVVA----LLKAQNIRHIRLYDAD------RAMLLALANTGIQVTISVPND 80 (499)
Q Consensus 38 ~~~vv~----llk~~~i~~VRlYdad------~~vL~Ala~tgi~V~vgV~n~ 80 (499)
|++|++ ..+.+||+.+|+||+- ...+++.++.|..+...+.-.
T Consensus 94 ~d~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt 146 (596)
T PRK14042 94 ADDVVRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYT 146 (596)
T ss_pred ChHHHHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEec
Confidence 566655 4456899999999854 235677888999887775543
No 86
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.98 E-value=3.1e+02 Score=30.09 Aligned_cols=131 Identities=15% Similarity=0.215 Sum_probs=75.1
Q ss_pred CceeEEecCCCCCCC----CHHHHHHHHHh-CCCCEEEEccCCH-----HHHHHHHhc-CCEEEEecCCCccccccccHH
Q 010833 22 AFIGVNIGTDLSDMP----SPTQVVALLKA-QNIRHIRLYDADR-----AMLLALANT-GIQVTISVPNDQLLGIGQSNA 90 (499)
Q Consensus 22 ~~iGvnYg~~~~n~p----~~~~vv~llk~-~~i~~VRlYdad~-----~vL~Ala~t-gi~V~vgV~n~~~~~ia~~~~ 90 (499)
..+|.|-+.||-+++ ...+.++.|.+ .|+.+||+=..+| ++++|++++ .+-=.+-+|.. +-.
T Consensus 194 ~L~gqdv~aYG~D~~~~~~~l~~Ll~~l~~I~G~~riR~~~~~P~~~~d~lI~~~~~~~kv~~~lHlPvQ---sGs---- 266 (437)
T COG0621 194 VLTGQDVNAYGKDLGGGKPNLADLLRELSKIPGIERIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLPVQ---SGS---- 266 (437)
T ss_pred EEEEEehhhccccCCCCccCHHHHHHHHhcCCCceEEEEecCCchhcCHHHHHHHhcCCcccccccCccc---cCC----
Confidence 357999898888875 34455554433 4688999877664 678887764 33333333321 110
Q ss_pred HHHHHHHHHhcccCCCCcEEEEEecccccc--CCCCChHHHHHHHHHHHHHHHhCCCCCceEEecccccccccccCCCCc
Q 010833 91 TAANWVARHVAAHVPTTNITAIAVGSEVLT--VLPNAGPVLVSALKFIHSALVAANLDDQIKVSTPHSSSIILDSFPPSQ 168 (499)
Q Consensus 91 ~A~~Wv~~~v~~y~p~~~I~~I~VGNEvl~--~~~~~~~~Ll~am~nv~~aL~~~gl~~~IkVsT~~s~~vl~~s~pPS~ 168 (499)
|++|- +-..+....+.-++.+|++....-++.+|-|+ ||
T Consensus 267 -------------------------d~ILk~M~R~yt~e~~~~~i~k~R~~~Pd~~i~tDiIVG-----------FP--- 307 (437)
T COG0621 267 -------------------------DRILKRMKRGYTVEEYLEIIEKLRAARPDIAISTDIIVG-----------FP--- 307 (437)
T ss_pred -------------------------HHHHHHhCCCcCHHHHHHHHHHHHHhCCCceEeccEEEE-----------CC---
Confidence 12221 12456678888888888887654444444444 44
Q ss_pred ccccCCcchhhhhHHHHHHhcCCcccccccccccc
Q 010833 169 AFFNRSWDPVMVPLLKFLQSTGSYLMLNVYPYYDY 203 (499)
Q Consensus 169 ~~F~~~~~~~l~~ll~fL~~t~s~~~vN~YPyf~~ 203 (499)
|. -.+.....++|+.+ .-|=.+|+++|=.-
T Consensus 308 gE----TeedFe~tl~lv~e-~~fd~~~~F~YSpR 337 (437)
T COG0621 308 GE----TEEDFEETLDLVEE-VRFDRLHVFKYSPR 337 (437)
T ss_pred CC----CHHHHHHHHHHHHH-hCCCEEeeeecCCC
Confidence 21 12234445666654 45667788876444
No 87
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=20.75 E-value=2.2e+02 Score=26.05 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=29.1
Q ss_pred HHHHHHHHHhCCCCEEEEc--c--------CC---HHHHHHHHhcCCEEEE
Q 010833 38 PTQVVALLKAQNIRHIRLY--D--------AD---RAMLLALANTGIQVTI 75 (499)
Q Consensus 38 ~~~vv~llk~~~i~~VRlY--d--------ad---~~vL~Ala~tgi~V~v 75 (499)
.+++.+.++.+||+.|+++ . .. ..+|++|+..||+|..
T Consensus 59 ae~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~ 109 (132)
T PRK09607 59 AEKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGR 109 (132)
T ss_pred HHHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEE
Confidence 4566777888999988887 3 22 3799999999999653
No 88
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=20.57 E-value=2.1e+02 Score=28.66 Aligned_cols=55 Identities=22% Similarity=0.261 Sum_probs=36.5
Q ss_pred HHHHHHHHhCCCCEEEEccCC---HHHHHHHHhcCCEEEEecCCCccccccccHHHHHHHHH
Q 010833 39 TQVVALLKAQNIRHIRLYDAD---RAMLLALANTGIQVTISVPNDQLLGIGQSNATAANWVA 97 (499)
Q Consensus 39 ~~vv~llk~~~i~~VRlYdad---~~vL~Ala~tgi~V~vgV~n~~~~~ia~~~~~A~~Wv~ 97 (499)
.+.+++|.+.++..+||=+.| ...|+.++.+|..|+|+.-...+..+ ..|.++++
T Consensus 79 ~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~stl~EI----~~Av~~~~ 136 (241)
T PF03102_consen 79 EESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGMSTLEEI----ERAVEVLR 136 (241)
T ss_dssp HHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT--HHHH----HHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCCCCHHHH----HHHHHHHH
Confidence 456778888889999988765 67999999999999999877655544 45566553
No 89
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=20.15 E-value=5.8e+02 Score=24.75 Aligned_cols=96 Identities=13% Similarity=0.186 Sum_probs=57.6
Q ss_pred HHHHHHHHHhCCCCEEEEc-cCC---HHHHHHHHhcCCEEEEecCCCccccccccHHHHHHHHHHHhcccCCCC-cEEEE
Q 010833 38 PTQVVALLKAQNIRHIRLY-DAD---RAMLLALANTGIQVTISVPNDQLLGIGQSNATAANWVARHVAAHVPTT-NITAI 112 (499)
Q Consensus 38 ~~~vv~llk~~~i~~VRlY-dad---~~vL~Ala~tgi~V~vgV~n~~~~~ia~~~~~A~~Wv~~~v~~y~p~~-~I~~I 112 (499)
|.+.++.++..|.+.|=+- ++. ..+++.+++.|+++-|.++... .+. .+.+|.+.. .|...
T Consensus 69 P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T--~~~------------~~~~~l~~vD~VlvM 134 (201)
T PF00834_consen 69 PERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPET--PVE------------ELEPYLDQVDMVLVM 134 (201)
T ss_dssp GGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS---GG------------GGTTTGCCSSEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCC--Cch------------HHHHHhhhcCEEEEE
Confidence 6777877777777766332 222 3688999999999988886542 221 244444432 33333
Q ss_pred EeccccccCCCCChHHHHHHHHHHHHHHHhCCCCCce
Q 010833 113 AVGSEVLTVLPNAGPVLVSALKFIHSALVAANLDDQI 149 (499)
Q Consensus 113 ~VGNEvl~~~~~~~~~Ll~am~nv~~aL~~~gl~~~I 149 (499)
.| |+=..++.-.+..+..|+.+|+.+.+.|++-.|
T Consensus 135 sV--~PG~~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I 169 (201)
T PF00834_consen 135 SV--EPGFGGQKFIPEVLEKIRELRKLIPENGLDFEI 169 (201)
T ss_dssp SS---TTTSSB--HGGHHHHHHHHHHHHHHHTCGSEE
T ss_pred Ee--cCCCCcccccHHHHHHHHHHHHHHHhcCCceEE
Confidence 33 332233445568999999999999998875433
Done!