Query 010834
Match_columns 499
No_of_seqs 323 out of 1591
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 05:05:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010834.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010834hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1342 Histone deacetylase co 100.0 9E-139 2E-143 1054.2 34.3 383 12-394 2-385 (425)
2 PTZ00063 histone deacetylase; 100.0 4E-117 8E-122 930.5 41.7 389 15-403 2-394 (436)
3 PTZ00346 histone deacetylase; 100.0 1.7E-98 4E-103 785.5 37.5 373 15-388 18-404 (429)
4 COG0123 AcuC Deacetylases, inc 100.0 1.7E-81 3.7E-86 646.2 32.3 324 17-349 2-335 (340)
5 PF00850 Hist_deacetyl: Histon 100.0 9.5E-78 2.1E-82 612.6 23.5 297 24-328 1-311 (311)
6 KOG1343 Histone deacetylase co 100.0 1.4E-47 3E-52 425.8 23.1 288 34-334 463-762 (797)
7 KOG1344 Predicted histone deac 100.0 5.5E-41 1.2E-45 323.4 12.9 291 16-322 13-312 (324)
8 KOG1343 Histone deacetylase co 100.0 3.9E-34 8.5E-39 318.7 10.7 313 17-333 29-358 (797)
9 cd04502 SGNH_hydrolase_like_7 76.3 8.4 0.00018 35.2 6.7 49 255-306 44-95 (171)
10 KOG2749 mRNA cleavage and poly 75.8 22 0.00047 38.2 10.2 109 166-309 122-248 (415)
11 PTZ00346 histone deacetylase; 74.4 4.1 8.8E-05 44.4 4.6 41 331-371 344-387 (429)
12 cd04237 AAK_NAGS-ABP AAK_NAGS- 72.4 7.7 0.00017 39.6 5.9 63 244-314 1-63 (280)
13 cd01835 SGNH_hydrolase_like_3 69.6 23 0.0005 32.9 8.1 74 232-306 41-117 (193)
14 COG3914 Spy Predicted O-linked 69.4 1.1E+02 0.0023 35.0 14.1 168 153-346 311-507 (620)
15 KOG0121 Nuclear cap-binding pr 66.8 6.7 0.00014 36.3 3.5 43 150-192 72-121 (153)
16 cd01825 SGNH_hydrolase_peri1 S 65.2 20 0.00043 32.9 6.6 51 252-307 47-103 (189)
17 cd01828 sialate_O-acetylestera 64.5 24 0.00052 32.1 6.9 42 259-306 46-93 (169)
18 TIGR01007 eps_fam capsular exo 63.9 85 0.0018 29.7 10.8 16 173-188 44-59 (204)
19 cd01832 SGNH_hydrolase_like_1 63.4 26 0.00056 32.1 7.0 61 240-306 47-111 (185)
20 cd01822 Lysophospholipase_L1_l 59.9 38 0.00082 30.6 7.3 46 255-306 58-107 (177)
21 cd01836 FeeA_FeeB_like SGNH_hy 59.0 30 0.00065 32.0 6.6 61 239-306 50-112 (191)
22 cd03110 Fer4_NifH_child This p 58.3 68 0.0015 29.6 8.9 14 176-189 25-38 (179)
23 TIGR01969 minD_arch cell divis 58.2 22 0.00047 34.5 5.7 19 171-189 25-43 (251)
24 TIGR01890 N-Ac-Glu-synth amino 57.7 15 0.00034 39.5 5.0 62 245-314 1-62 (429)
25 TIGR03018 pepcterm_TyrKin exop 57.5 41 0.00089 32.3 7.4 24 247-270 134-157 (207)
26 PRK05279 N-acetylglutamate syn 57.0 28 0.0006 37.6 6.8 64 244-315 8-71 (441)
27 cd04501 SGNH_hydrolase_like_4 56.9 46 0.001 30.5 7.5 47 257-306 55-102 (183)
28 PF02310 B12-binding: B12 bind 56.8 21 0.00046 30.7 4.9 47 254-311 44-90 (121)
29 cd01820 PAF_acetylesterase_lik 55.1 23 0.0005 33.9 5.3 49 256-306 84-134 (214)
30 cd01841 NnaC_like NnaC (CMP-Ne 54.8 44 0.00095 30.4 6.9 69 231-306 26-96 (174)
31 cd00840 MPP_Mre11_N Mre11 nucl 53.9 57 0.0012 30.8 7.7 59 242-308 23-84 (223)
32 cd01830 XynE_like SGNH_hydrola 53.7 32 0.00069 32.6 6.0 50 256-305 69-124 (204)
33 TIGR02855 spore_yabG sporulati 53.1 30 0.00066 35.7 5.9 58 251-309 143-206 (283)
34 COG1618 Predicted nucleotide k 52.9 51 0.0011 31.9 7.0 59 230-307 79-137 (179)
35 KOG3147 6-phosphogluconolacton 52.4 51 0.0011 33.6 7.2 85 190-277 70-158 (252)
36 cd01829 SGNH_hydrolase_peri2 S 52.0 46 0.001 30.9 6.7 53 254-306 52-114 (200)
37 cd02068 radical_SAM_B12_BD B12 51.5 43 0.00093 29.5 6.1 50 251-312 29-78 (127)
38 PF13472 Lipase_GDSL_2: GDSL-l 49.1 15 0.00032 32.4 2.7 65 240-308 41-109 (179)
39 cd01838 Isoamyl_acetate_hydrol 48.5 46 0.001 30.5 6.0 52 254-306 53-113 (199)
40 cd01443 Cdc25_Acr2p Cdc25 enzy 47.0 94 0.002 26.7 7.4 67 231-313 42-110 (113)
41 PF05582 Peptidase_U57: YabG p 45.8 46 0.00099 34.6 5.9 58 251-309 144-207 (287)
42 PRK04531 acetylglutamate kinas 45.6 30 0.00066 37.4 4.8 53 254-314 24-80 (398)
43 cd01844 SGNH_hydrolase_like_6 44.3 48 0.001 30.6 5.4 48 254-306 50-99 (177)
44 cd01833 XynB_like SGNH_hydrola 44.1 66 0.0014 28.7 6.2 43 255-299 34-76 (157)
45 COG0420 SbcD DNA repair exonuc 41.4 89 0.0019 33.0 7.6 59 242-308 22-83 (390)
46 cd00229 SGNH_hydrolase SGNH_hy 40.7 86 0.0019 27.0 6.3 56 254-309 58-115 (187)
47 PLN02825 amino-acid N-acetyltr 39.0 59 0.0013 36.5 5.9 64 245-316 1-64 (515)
48 TIGR01361 DAHP_synth_Bsub phos 38.5 2.1E+02 0.0045 29.1 9.3 78 241-331 144-224 (260)
49 TIGR01278 DPOR_BchB light-inde 37.5 62 0.0013 35.9 5.8 58 248-315 72-130 (511)
50 CHL00202 argB acetylglutamate 36.6 96 0.0021 31.7 6.7 64 244-314 6-69 (284)
51 cd07388 MPP_Tt1561 Thermus the 35.8 1.4E+02 0.003 29.7 7.4 52 248-308 19-70 (224)
52 CHL00073 chlN photochlorophyll 35.4 57 0.0012 36.0 5.1 54 249-312 85-140 (457)
53 PRK10528 multifunctional acyl- 35.3 1.2E+02 0.0026 28.6 6.7 46 255-306 65-114 (191)
54 CHL00076 chlB photochlorophyll 34.9 1E+02 0.0022 34.4 7.0 59 248-316 72-132 (513)
55 PLN02512 acetylglutamate kinas 33.6 1.1E+02 0.0023 31.8 6.5 64 243-313 29-92 (309)
56 TIGR00034 aroFGH phospho-2-deh 33.2 1.8E+02 0.0038 31.1 8.0 29 162-193 239-269 (344)
57 cd01821 Rhamnogalacturan_acety 32.8 1.2E+02 0.0026 28.3 6.2 45 261-306 65-113 (198)
58 cd06167 LabA_like LabA_like pr 32.5 1.6E+02 0.0035 26.3 6.8 43 256-313 94-136 (149)
59 PF04321 RmlD_sub_bind: RmlD s 32.5 14 0.00031 37.4 -0.1 54 253-306 43-99 (286)
60 PRK12755 phospho-2-dehydro-3-d 32.4 1.8E+02 0.0039 31.2 8.0 31 160-193 244-276 (353)
61 COG2755 TesA Lysophospholipase 32.2 3.7E+02 0.0081 25.2 9.6 92 254-347 69-177 (216)
62 PRK13236 nitrogenase reductase 31.6 49 0.0011 33.9 3.6 23 173-196 32-54 (296)
63 cd02651 nuc_hydro_IU_UC_XIUA n 31.6 75 0.0016 32.6 5.0 52 253-316 105-156 (302)
64 PRK14476 nitrogenase molybdenu 30.9 1.1E+02 0.0025 33.4 6.5 66 248-324 79-150 (455)
65 TIGR00583 mre11 DNA repair pro 30.8 1.8E+02 0.0039 31.6 7.9 48 243-298 25-72 (405)
66 TIGR01285 nifN nitrogenase mol 30.7 1.6E+02 0.0035 32.0 7.6 63 248-321 78-146 (432)
67 PRK13396 3-deoxy-7-phosphohept 29.5 3.1E+02 0.0067 29.4 9.2 124 237-385 214-345 (352)
68 cd01971 Nitrogenase_VnfN_like 28.3 1.1E+02 0.0024 33.0 5.8 58 249-316 74-132 (427)
69 cd02067 B12-binding B12 bindin 28.3 1.4E+02 0.0031 25.8 5.5 47 255-312 44-92 (119)
70 PRK11148 cyclic 3',5'-adenosin 27.4 2.2E+02 0.0048 28.5 7.5 54 246-308 39-93 (275)
71 cd07402 MPP_GpdQ Enterobacter 26.7 2.3E+02 0.0049 27.2 7.2 56 244-308 22-78 (240)
72 PRK13398 3-deoxy-7-phosphohept 26.7 3.5E+02 0.0075 27.7 8.7 77 242-331 147-226 (266)
73 COG0455 flhG Antiactivator of 26.4 1.3E+02 0.0029 30.6 5.7 95 168-272 25-123 (262)
74 COG1654 BirA Biotin operon rep 26.2 45 0.00097 28.1 1.8 53 268-320 14-67 (79)
75 PRK09841 cryptic autophosphory 26.0 9.4E+02 0.02 28.0 13.1 17 173-189 558-574 (726)
76 cd01981 Pchlide_reductase_B Pc 25.9 1.3E+02 0.0028 32.4 5.8 57 248-314 72-130 (430)
77 CHL00175 minD septum-site dete 25.2 75 0.0016 31.8 3.6 20 172-191 41-60 (281)
78 TIGR02370 pyl_corrinoid methyl 25.2 1.4E+02 0.0031 28.7 5.4 37 254-301 128-164 (197)
79 cd01839 SGNH_arylesterase_like 24.6 1.8E+02 0.004 27.3 6.0 36 259-299 77-117 (208)
80 PF10609 ParA: ParA/MinD ATPas 24.5 2.4E+02 0.0051 23.9 5.8 56 234-308 6-61 (81)
81 cd05781 DNA_polB_B3_exo DEDDy 24.3 2.3E+02 0.0049 27.1 6.6 88 177-303 4-91 (188)
82 TIGR00259 thylakoid_BtpA membr 24.1 3.7E+02 0.008 27.5 8.3 59 257-329 167-227 (257)
83 cd01494 AAT_I Aspartate aminot 23.9 1.1E+02 0.0025 26.6 4.2 46 161-209 108-158 (170)
84 cd01834 SGNH_hydrolase_like_2 23.8 1.1E+02 0.0023 27.8 4.1 48 257-306 57-110 (191)
85 COG2047 Uncharacterized protei 23.7 1.2E+02 0.0025 30.8 4.4 46 261-313 83-128 (258)
86 cd01827 sialate_O-acetylestera 23.5 1.7E+02 0.0037 26.8 5.4 41 259-299 65-105 (188)
87 cd01967 Nitrogenase_MoFe_alpha 23.4 1.8E+02 0.0039 30.8 6.2 64 248-321 74-139 (406)
88 TIGR02026 BchE magnesium-proto 23.3 1.5E+02 0.0032 32.7 5.8 45 255-311 57-101 (497)
89 PF14606 Lipase_GDSL_3: GDSL-l 23.1 1.1E+02 0.0024 29.6 4.1 49 253-312 51-105 (178)
90 PF09383 NIL: NIL domain; Int 23.0 38 0.00082 27.3 0.8 51 251-301 17-71 (76)
91 PF00581 Rhodanese: Rhodanese- 22.6 1.2E+02 0.0027 24.9 3.9 19 295-313 91-109 (113)
92 cd04241 AAK_FomA-like AAK_FomA 22.2 1.7E+02 0.0038 28.9 5.5 52 264-316 1-53 (252)
93 cd01972 Nitrogenase_VnfE_like 22.1 1.8E+02 0.004 31.3 6.1 67 247-323 75-143 (426)
94 PF02310 B12-binding: B12 bind 21.4 2.8E+02 0.0061 23.6 6.1 96 168-313 21-117 (121)
95 cd03111 CpaE_like This protein 21.4 1.1E+02 0.0024 26.2 3.4 15 175-189 29-43 (106)
96 PRK10818 cell division inhibit 21.2 1E+02 0.0022 30.6 3.5 17 173-189 29-45 (270)
97 cd01966 Nitrogenase_NifN_1 Nit 20.9 3.1E+02 0.0067 29.6 7.5 67 249-326 69-141 (417)
98 PF06925 MGDG_synth: Monogalac 20.7 99 0.0021 28.6 3.2 24 244-267 72-95 (169)
99 cd01965 Nitrogenase_MoFe_beta_ 20.5 2.8E+02 0.006 29.9 7.0 56 248-313 68-129 (428)
100 COG1135 AbcC ABC-type metal io 20.5 1.2E+02 0.0027 32.1 4.1 58 249-306 276-337 (339)
101 TIGR00381 cdhD CO dehydrogenas 20.2 4.8E+02 0.01 28.4 8.5 61 243-308 128-196 (389)
No 1
>KOG1342 consensus Histone deacetylase complex, catalytic component RPD3 [Chromatin structure and dynamics]
Probab=100.00 E-value=9.2e-139 Score=1054.21 Aligned_cols=383 Identities=70% Similarity=1.257 Sum_probs=377.9
Q ss_pred CCCCCCeEEEEEcCCCCCCCCCCCCCCCchHHHHHHHHHHHcCCCCCcEEeCCCCCCHHHHhccchHHHHHHHHhcCchh
Q 010834 12 TDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPET 91 (499)
Q Consensus 12 ~~~~~~~v~~~yd~~~~~~~~g~~HP~~P~R~~~i~~ll~~~gL~~~~~i~~p~~As~eeL~~~Hs~eYv~~L~~~~~~~ 91 (499)
.+..|+||+|+|++++++|+||++|||+|+|++++|+||.+|||.++|++++|.+|+.+||++|||++||+||++++|++
T Consensus 2 ~~~~k~~V~y~yd~~vg~~~Yg~~hpmkP~R~~mth~Lv~~YgL~k~M~i~~p~~a~~~dm~~FHt~eYi~fL~~V~p~n 81 (425)
T KOG1342|consen 2 YSLIKRRVSYFYDPDVGNFHYGQGHPMKPHRIRMTHSLVLNYGLYKKMEIYRPDKASAQDMTRFHTDEYINFLQSVTPEN 81 (425)
T ss_pred CCcCCceEEEEecCccccccccCCCCCCcceehhhhHHHHhcchhhceeeccCCCCCHHHHHhhchHHHHHHHhhCCccc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhcccCCCCcCCcchHHHHHHHHHHHHHHHHHHhcCccceeeecCCCCCCcccCCCCcceeechHHHHHHHH
Q 010834 92 QQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILEL 171 (499)
Q Consensus 92 ~~~~~~~l~~f~l~~Dcpvf~gl~~~~~~saGgsl~aa~~L~~g~~~iAin~~GG~HHA~~~~AsGFCy~NdiaiAi~~L 171 (499)
+....+++++||+++|||+|+|||+||++++||||.||.+|++++++|||||+||+|||||++||||||+|||||||++|
T Consensus 82 ~~~~~~~~~~fNvg~DCPvF~gL~~fC~~~~GgSl~aa~kLn~~~~dIaINW~GGlHHAKK~eASGFCYvNDIVL~ILeL 161 (425)
T KOG1342|consen 82 METFNKELKQFNVGEDCPVFDGLYDYCQLYTGGSLNAAQKLNRGECDIAINWAGGLHHAKKSEASGFCYVNDIVLGILEL 161 (425)
T ss_pred ccccchHHHhcCCCCCCccccCHHHHHHHhcccchHHHHHhCCCCceEEEecCcccccccccccCcceeehHHHHHHHHH
Confidence 98877889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCcEEEEEccccCCccchhccccCCCEEEeecCCCC-CCCCCCCCCccccCCCCCceeeccCCCCCCChHHHHHHHH
Q 010834 172 LKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFG-DYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFK 250 (499)
Q Consensus 172 lk~~~RVl~IDiDvHHGDGtqeaF~~d~rVltiS~H~~g-~ffPgTG~~~eiG~g~G~g~~vNVPL~~G~~D~~y~~~f~ 250 (499)
||.++||||||||+|||||||||||.++||||||||+|| +||||||++.|+|.|+||+|+|||||++|++|++|..+|+
T Consensus 162 lK~h~RVLYIDIDvHHGDGVEeAFy~TDRVmTvSfHKyg~~fFPGTG~l~d~G~~kGkyyavNVPL~dGidD~sy~~if~ 241 (425)
T KOG1342|consen 162 LKYHKRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKYGPGFFPGTGDLSDIGAGKGKYYAVNVPLKDGIDDESYESIFK 241 (425)
T ss_pred HHhCCceEEEEecccCCccHHHHHhccceeEEEEEEeccCCCCCCCCcceeccCCCCceEEEccchhccCCcHHHHHHHH
Confidence 999999999999999999999999999999999999997 6999999999999999999999999999999999999999
Q ss_pred HHHHhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCchhhHHHHHHHHHHcCC
Q 010834 251 PIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGV 330 (499)
Q Consensus 251 ~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~~~pll~lggGGY~~~~vAr~w~~~t~~llg~ 330 (499)
+||.++++.|+|++||+|||+|+|.||||||||||++||++|+++++++++|+++|||||||++||||||||+|++++|+
T Consensus 242 pIi~~v~e~f~P~AiVLQCGaDSL~gDRlgcFnLsi~Gh~~Cv~fvksfn~pllvlGGGGYT~rNVARcWtYeT~v~~~~ 321 (425)
T KOG1342|consen 242 PIISKVMERFQPEAIVLQCGADSLAGDRLGCFNLSIKGHAECVKFVKSFNLPLLVLGGGGYTLRNVARCWTYETGVLLDQ 321 (425)
T ss_pred HHHHHHHHHhCCceEEEEcCCccccCCccceeeecchhHHHHHHHHHHcCCcEEEecCCccchhhhHHHHHHHhhhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcchhhhccCCCcccccCCCCCCCcCcHHHHHHHHHHHHHHhccCCCCCCcccccCCC
Q 010834 331 EVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPP 394 (499)
Q Consensus 331 ~~~~~~P~~~y~~~~~p~~~l~~~~~~~~~~n~~~~le~i~~~~~~~l~~l~~~p~v~~~~~~~ 394 (499)
++++++|+|+||+||||||+|++.+++|+|+|++++|++|++++++||+++++|||||||.+|+
T Consensus 322 ~~~~elP~n~y~~yF~PDy~l~~~~~~~~n~Nt~~~l~~i~~~~~enL~~l~~apSVqm~~~p~ 385 (425)
T KOG1342|consen 322 ELPNELPYNDYFEYFGPDYKLHIDPSNMENFNTPHYLESIRNEILENLRMLQHAPSVQMQMIPN 385 (425)
T ss_pred cccccCCCccchhhhCCCcccccCccchhcccCHHHHHHHHHHHHHHHHhccCCCcccccccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999997
No 2
>PTZ00063 histone deacetylase; Provisional
Probab=100.00 E-value=3.8e-117 Score=930.45 Aligned_cols=389 Identities=64% Similarity=1.171 Sum_probs=372.7
Q ss_pred CCCeEEEEEcCCCCCCCCCCCCCCCchHHHHHHHHHHHcCCCCCcEEeCCCCCCHHHHhccchHHHHHHHHhcCchhhHH
Q 010834 15 VKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQD 94 (499)
Q Consensus 15 ~~~~v~~~yd~~~~~~~~g~~HP~~P~R~~~i~~ll~~~gL~~~~~i~~p~~As~eeL~~~Hs~eYv~~L~~~~~~~~~~ 94 (499)
.|+||+||||++++.|++|++|||+|.|+++++++|.++||.+++++++|++|+.++|++||+++||++|++.+++...+
T Consensus 2 ~~~~v~~~yd~~~~~h~~g~~HP~~P~Rl~~~~~ll~~~gl~~~~~~~~p~~At~eeL~~vHs~~YI~~L~~~~~~~~~~ 81 (436)
T PTZ00063 2 MRKRVSYFYDPDIGSYYYGPGHPMKPQRIRMAHALILSYDLYKHMEIYRPHKSVEPELVLFHDEEYVDFLSSISPENYRD 81 (436)
T ss_pred CCceEEEEECccccCcCCcCcCCcChHHHHHHHHHHHhCCCcccCeEecCCCCCHHHHHHhCCHHHHHHHHHhChhhccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999988765433
Q ss_pred HHHHhhhcccC--CCCcCCcchHHHHHHHHHHHHHHHHHHhcCccceeeecCCCCCCcccCCCCcceeechHHHHHHHHH
Q 010834 95 QLRQLKRFNVG--EDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELL 172 (499)
Q Consensus 95 ~~~~l~~f~l~--~Dcpvf~gl~~~~~~saGgsl~aa~~L~~g~~~iAin~~GG~HHA~~~~AsGFCy~NdiaiAi~~Ll 172 (499)
....+.+|+++ .|||+|+++|++|+++|||||.||+++++|++++||||+||+|||++++|+||||||||||||++|+
T Consensus 82 ~~~~~~~f~lg~~~D~pv~~gl~~~a~~aaGgsl~Aa~~l~~g~~~iAin~~GG~HHA~~~~A~GFC~~NdiaiAi~~L~ 161 (436)
T PTZ00063 82 FTYQLKRFNVGEATDCPVFDGLFEFQQSCAGASIDGAYKLNNHQADICVNWSGGLHHAKRSEASGFCYINDIVLGILELL 161 (436)
T ss_pred chhhhhhcccCCCCCCCcccHHHHHHHHHHhHHHHHHHHHHcCCCCEEeeCCCCCCCCccCCCCceeeecHHHHHHHHHH
Confidence 22346688998 4999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcEEEEEccccCCccchhccccCCCEEEeecCCCCCCCCCCCCCccccCCCCCceeeccCCCCCCChHHHHHHHHHH
Q 010834 173 KQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPI 252 (499)
Q Consensus 173 k~~~RVl~IDiDvHHGDGtqeaF~~d~rVltiS~H~~g~ffPgTG~~~eiG~g~G~g~~vNVPL~~G~~D~~y~~~f~~i 252 (499)
+.++||||||||||||||||+|||.+++|||||||++++||||||...++|.+.|++|+|||||++|++|++|+.+|+++
T Consensus 162 ~~~~RVliID~DvHHGdGtqe~F~~~~~VltvS~H~~~~ffPgtG~~~e~G~g~G~g~~vNvPL~~G~~D~~Y~~~f~~i 241 (436)
T PTZ00063 162 KYHARVMYIDIDVHHGDGVEEAFYVTHRVMTVSFHKFGDFFPGTGDVTDIGVAQGKYYSVNVPLNDGIDDDSFVDLFKPV 241 (436)
T ss_pred HhCCeEEEEeCCCCCCcchHHHhccCCCeEEEEeccCCCcCCCCCCccccCCCCCCceEEEeeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred HHhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCchhhHHHHHHHHHHcCC--
Q 010834 253 IGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGV-- 330 (499)
Q Consensus 253 v~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~~~pll~lggGGY~~~~vAr~w~~~t~~llg~-- 330 (499)
|.|+++.|+||+||+|||+|+|.+||||+|+||++||++|+++++++++|+++||||||+++++||||+++|++++|.
T Consensus 242 i~~~i~~f~Pd~IvvqaG~D~~~~DpLg~l~Lt~~g~~~~~~~~~~~~~pil~l~gGGY~~~~lar~w~~~t~~~~~~~~ 321 (436)
T PTZ00063 242 ISKCVEVYRPGAIVLQCGADSLTGDRLGRFNLTIKGHAACVEFVRSLNIPLLVLGGGGYTIRNVARCWAYETGVILNKHD 321 (436)
T ss_pred HHHHHHHhCCCEEEEECCccccCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEeCccCCchHHHHHHHHHHHHHhCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCCCcchhhhccCCCcccccCCCCCCCcCcHHHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCCCCCC
Q 010834 331 EVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPEADE 403 (499)
Q Consensus 331 ~~~~~~P~~~y~~~~~p~~~l~~~~~~~~~~n~~~~le~i~~~~~~~l~~l~~~p~v~~~~~~~~~~~~~~~~ 403 (499)
+++++||+|+||+||+|+|+|++.+++|+|+|+++||++|++++++||+.+++|||||||.+||+....+.++
T Consensus 322 ~~~~~iP~~~~~~~~~~~~~l~~~~~~~~n~n~~~~l~~~~~~~~~~l~~~~~ap~v~~~~~~~~~~~~~~~~ 394 (436)
T PTZ00063 322 EMSDQISLNDYYDYYAPDFQLHLQPSNIPNYNSPEHLEKIKVKILENLRYLEHAPGVQFAYVPPDFFDRDIDD 394 (436)
T ss_pred cCCccCCCCcchhhcCCCeEeecCcccccCCCCHHHHHHHHHHHHHHHhcCCCCCeeccccCCcccccccccc
Confidence 6999999999999999999999999999999999999999999999999999999999999999876554433
No 3
>PTZ00346 histone deacetylase; Provisional
Probab=100.00 E-value=1.7e-98 Score=785.53 Aligned_cols=373 Identities=40% Similarity=0.731 Sum_probs=336.8
Q ss_pred CCCeEEEE----EcCCCCCCCCCCCCCCCchHHHHHHHHHHHcCCCCCcEEeCCCCCCHHHHhccchHHHHHHHHhcCch
Q 010834 15 VKRKVCYF----YDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPE 90 (499)
Q Consensus 15 ~~~~v~~~----yd~~~~~~~~g~~HP~~P~R~~~i~~ll~~~gL~~~~~i~~p~~As~eeL~~~Hs~eYv~~L~~~~~~ 90 (499)
.+++|+|| |.+++..|+|+++|||+|.|+++++++|+++||..++.++.|++|+.++|++||+++||++|++....
T Consensus 18 ~~~~~~~~~~~~y~~~~~~~~~~~~HPe~P~Rl~~~~~ll~~~gl~~~~~~~~p~~At~eeL~~vHs~~YI~~l~~~~~~ 97 (429)
T PTZ00346 18 SRGRVALIDTSGYASDMNISAFVPQHAMKPYRVLAAMEIVRSLKIDAHCRTVVPPLVKVEELMAYHTDTYLANLGLHSCR 97 (429)
T ss_pred ccceeEEEecCccccccccccCCCcCCCCHHHHHHHHHHHHhcCCcccCeeecCCCCCHHHHHHhCCHHHHHHHHHhccc
Confidence 46789999 66667889999999999999999999999999999999999999999999999999999999874322
Q ss_pred hhHHHHHHhhhcccCCCCcCCcchHHHHHHHHHHHHHHHHHHhcCccceeeecCCCCCCcccCCCCcceeechHHHHHHH
Q 010834 91 TQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILE 170 (499)
Q Consensus 91 ~~~~~~~~l~~f~l~~Dcpvf~gl~~~~~~saGgsl~aa~~L~~g~~~iAin~~GG~HHA~~~~AsGFCy~NdiaiAi~~ 170 (499)
..... .....+.++.|||+|+++|++|+++|||+|.||+++++|++++||||+||+|||++++|+||||||||||||++
T Consensus 98 ~~~~~-~~~~~~~~d~Dtpv~~~~~~~a~laaGgsl~Aa~~v~~g~~~~Ai~~pGG~HHA~~~~a~GFC~fNdvAIAa~~ 176 (429)
T PTZ00346 98 SWLWN-AETSKVFFSGDCPPVEGLMEHSIATASGTLMGAVLLNSGQVDVAVHWGGGMHHSKCGECSGFCYVNDIVLGILE 176 (429)
T ss_pred ccccc-cccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEeCCCCcCcCCCCCCCcchHHhHHHHHHHH
Confidence 11000 11223557789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcEEEEEccccCCccchhccccCCCEEEeecCCCC-CCCCCCCCCccccCCCCCceeeccCCCCCCChHHHHHHH
Q 010834 171 LLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFG-DYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLF 249 (499)
Q Consensus 171 Llk~~~RVl~IDiDvHHGDGtqeaF~~d~rVltiS~H~~g-~ffPgTG~~~eiG~g~G~g~~vNVPL~~G~~D~~y~~~f 249 (499)
|+++++||||||||||||||||++||++++|||||||+++ .||||||...++|.|.|++|++||||++|++|++|+.+|
T Consensus 177 ll~~~~RVliID~DVHHGnGTqeiF~~dp~Vl~vSiHq~~~~fyPgtG~~~e~G~g~G~g~~vNVPL~~G~~D~~Yl~~f 256 (429)
T PTZ00346 177 LLKCHDRVLYVDIDMHHGDGVDEAFCTSDRVFTLSLHKFGESFFPGTGHPRDVGYGRGRYYSMNLAVWDGITDFYYLGLF 256 (429)
T ss_pred HHHcCCeEEEEeCCCCCCchHHHHHcCCCCeEEEEecCCCCCCCCCCCCccccCCCCCceeEEeeeCCCCcCHHHHHHHH
Confidence 9999999999999999999999999999999999999995 599999999999999999999999999999999999999
Q ss_pred HHHHHhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCchhhHHHHHHHHHHcC
Q 010834 250 KPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALG 329 (499)
Q Consensus 250 ~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~~~pll~lggGGY~~~~vAr~w~~~t~~llg 329 (499)
+++|.|++++|+||+||+|||||++.+||||+|+||.+||.+|+++++++++|+++||||||++.++||||+++|++++|
T Consensus 257 ~~ii~p~l~~F~PdlIvvsaG~Da~~~DpLg~l~LT~~g~~~~~~~l~~~~~plv~vleGGY~~~~lar~w~~~t~~l~g 336 (429)
T PTZ00346 257 EHALHSIVRRYSPDAIVLQCGADSLAGDRLGLLNLSSFGHGQCVQAVRDLGIPMLALGGGGYTIRNVAKLWAYETSILTG 336 (429)
T ss_pred HHHHHHHHHhcCCCEEEEECCccCCCCCCCCCceeCHHHHHHHHHHHHhcCCCEEEEeCCcCCccHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC--CC--cchhhhccCCCcccccCCCCCCCcC-cHHHHHHHHHHHHHHh----ccCCCCCCcc
Q 010834 330 VEVDDK--MP--QHEYYEYFGPDYTLHVAPSNMENKN-SRQLLEEIRNKLLEYL----SKLQHAPSVQ 388 (499)
Q Consensus 330 ~~~~~~--~P--~~~y~~~~~p~~~l~~~~~~~~~~n-~~~~le~i~~~~~~~l----~~l~~~p~v~ 388 (499)
.++++. +| ..+|.+||+|+|+|++.+++++|.| +....+++.+++++++ +.++..|.+|
T Consensus 337 ~~i~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (429)
T PTZ00346 337 HPLPPNTVLPVAEMPLSGWLFQDSPLLIVAQDRSNHVLPGLHCQRAYQMMTEQIDRHVPHIQPHPRLQ 404 (429)
T ss_pred CCCCCCCCCCCCCCchhhhhcCCCccccccccccccCCCcchhHHHHHHHHHHHHhhhhccCCcHHHH
Confidence 999866 77 4689999999999999888888877 4566666665555555 4454334343
No 4
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.7e-81 Score=646.18 Aligned_cols=324 Identities=33% Similarity=0.557 Sum_probs=299.7
Q ss_pred CeEEEEEcCCCCCCCCCCCCCCCchHHHHHHHHHHHcCCCCCcEEeCCCCCCHHHHhccchHHHHHHHHhcCchhhHHHH
Q 010834 17 RKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQL 96 (499)
Q Consensus 17 ~~v~~~yd~~~~~~~~g~~HP~~P~R~~~i~~ll~~~gL~~~~~i~~p~~As~eeL~~~Hs~eYv~~L~~~~~~~~~~~~ 96 (499)
+++.++|++.+..|.++.+|||+|.|++++.++|++.++...+++++|++++.++|+++|+++||++|++.++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~Hpe~p~R~~~~~~~l~~~~~~~~~~~~~p~~~~~~~l~~vH~~~yv~~l~~~~~~~~---- 77 (340)
T COG0123 2 MKTALIYHPEFLEHEPPPGHPENPDRLRLILELLESSGLPDSLELVEPRPATLEELLLVHSPDYVEFLESLSEEEG---- 77 (340)
T ss_pred CcceEeeCHHHhcCCCCCCCCCChHHHHHHHHHHHhcCccccccccCCCcCCHHHHHhhCCHHHHHHHHHhccccc----
Confidence 5688999999999999999999999999999999999988899999999999999999999999999999876511
Q ss_pred HHhhhcccCCCCcCCcchHHHHHHHHHHHHHHHHHHhcCccceeeecCCCCCCcccCCCCcceeechHHHHHHHHHhc-C
Q 010834 97 RQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQ-H 175 (499)
Q Consensus 97 ~~l~~f~l~~Dcpvf~gl~~~~~~saGgsl~aa~~L~~g~~~iAin~~GG~HHA~~~~AsGFCy~NdiaiAi~~Llk~-~ 175 (499)
.+.++.|||+++++|++|++++|++++|++.+.+|+..++++|.||+|||++++|+|||+|||+||||++|+++ .
T Consensus 78 ----~~~~d~d~~~s~~~~~~a~~a~G~al~A~~~v~~g~~~~~~~~rppgHHA~~~~a~GFC~fNn~Aiaa~~l~~~~~ 153 (340)
T COG0123 78 ----YGNLDGDTPVSPGTYEAARLAAGGALTAVDAVLEGEDNAFALVRPPGHHAGRDRASGFCLFNNVAIAAKYLLKKGV 153 (340)
T ss_pred ----cccccCCCccChHHHHHHHHHhhHHHHHHHHHHcCccceEEECCCCcccccCCCCceeeeecHHHHHHHHHHHcCC
Confidence 46788999999999999999999999999999999866788888888999999999999999999999999996 7
Q ss_pred CcEEEEEccccCCccchhccccCCCEEEeecCCCC-CCCCCCCCCccccCCCCCceeeccCCCCCCChHHHHHHHHHHHH
Q 010834 176 ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFG-DYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIG 254 (499)
Q Consensus 176 ~RVl~IDiDvHHGDGtqeaF~~d~rVltiS~H~~g-~ffPgTG~~~eiG~g~G~g~~vNVPL~~G~~D~~y~~~f~~iv~ 254 (499)
+||+|||||+|||||||++||++++|+|+|+|+++ .||||||..+++|.|+ ++|++|||||+|++|++|+.+|+.++.
T Consensus 154 ~RVaIiD~DvHHGnGTqeify~~~~V~~~S~H~~~~~~yPgtg~~~e~g~g~-~g~~vNiPLp~g~~d~~y~~a~~~~v~ 232 (340)
T COG0123 154 KRVAIIDFDVHHGNGTQEIFYDDDDVLTVSLHQDGRPFYPGTGGADEIGEGK-EGNNVNIPLPPGTGDDSYLEALEEIVL 232 (340)
T ss_pred CcEEEEEecCCCChhhHHHHccCCCeEEEeccCCCCCCCCcCCCccccccCc-ccceEeeecCCCCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999994 6999999999999998 999999999999999999999999999
Q ss_pred hHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhc----CCCEEEEeCCCCCCchhhHHHHHHHHHHcCC
Q 010834 255 KVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSF----NVPLLLLGGGGYTIRNVARCWCYETGVALGV 330 (499)
Q Consensus 255 pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~----~~pll~lggGGY~~~~vAr~w~~~t~~llg~ 330 (499)
|++++|+||+||+|||||+|.+||||+|+||..+|.+|+++++++ ++|+++||||||+..+++++|++++..+.|.
T Consensus 233 ~~~~~f~PdlvivsaG~D~h~~Dpl~~~~Lt~~~~~~~~~~v~~~a~~~~~~~~~vleGGY~~~~l~~~~~~~~~~l~~~ 312 (340)
T COG0123 233 PLLEEFKPDLVIVSAGFDAHRGDPLGRLNLTEEGYAKIGRAVRKLAEGYGGPVVAVLEGGYNLDALARSLVAFLAGLAGL 312 (340)
T ss_pred HHHHhcCCCEEEEecCcccCCCCccceeecCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCChHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999988765 5699999999999999999999999999996
Q ss_pred C---CCCCCCcc-hhhhccCCCc
Q 010834 331 E---VDDKMPQH-EYYEYFGPDY 349 (499)
Q Consensus 331 ~---~~~~~P~~-~y~~~~~p~~ 349 (499)
. .+..+|.. +++..|.+++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~ 335 (340)
T COG0123 313 VEEELEEPLPEDLELRRAFRADY 335 (340)
T ss_pred Cccccccccccchhhhhhhccch
Confidence 4 33344443 5555566554
No 5
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine. Histone deacetylases (HDA) catalyse the removal of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily []. HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [, ], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 []. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression []. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements []. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [, ]. This entry represents the structural domain found in histone deacetylases. It consists of a 3-layer(alpha-beta-alpha) sandwich.; PDB: 4A69_A 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G 3MAX_C 3MEN_D 1T64_B ....
Probab=100.00 E-value=9.5e-78 Score=612.65 Aligned_cols=297 Identities=35% Similarity=0.645 Sum_probs=236.2
Q ss_pred cCCCCCCCCCCCCCCCchHHHHHHHHHHH-cCCCCCcEEeCCCCCCHHHHhccchHHHHHHHHhcCchhhHHHHHHhhhc
Q 010834 24 DPEVGNYYYGQGHPMKPHRIRMTHALLAH-YGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRF 102 (499)
Q Consensus 24 d~~~~~~~~g~~HP~~P~R~~~i~~ll~~-~gL~~~~~i~~p~~As~eeL~~~Hs~eYv~~L~~~~~~~~~~~~~~l~~f 102 (499)
+|.|. |.++++|||+|+|++.+.+.|.+ ++|++. ++|+.++|++|||++||++|++.+.............+
T Consensus 1 ~~~~~-~~~~~~Hpe~p~R~~~i~~~L~~~~~l~~~------~~a~~~~L~~vH~~~Yv~~l~~~~~~~~~~~~~~~~~~ 73 (311)
T PF00850_consen 1 HPQYQ-HQLGDGHPESPERLESIVEALKESYGLLPR------RPATDEELLRVHDPEYVDFLESASKEAKEEEEAGSPEF 73 (311)
T ss_dssp ----T-T-CCTTSSSCTHHHHHHHHHHHHTTTGGGG----------HHHHTTTS-HHHHHHHHHHHHHTSGCTHHHHHHH
T ss_pred CCccc-CCCCCCcCCCHHHHHHHHHHHHHhcCCCCC------CCCCHHHHHHcCCHHHHHHHHHhccccccccccccccc
Confidence 46676 88999999999999955555544 587655 99999999999999999999986543222110000111
Q ss_pred -c-c-CCCCcCCcchHHHHHHHHHHHHHHHHHHhcC--ccceeeecCCCCCCcccCCCCcceeechHHHHHHHHHhc--C
Q 010834 103 -N-V-GEDCPVFDGLFSFCQTYAGGSVGGAVKLNHG--LCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQ--H 175 (499)
Q Consensus 103 -~-l-~~Dcpvf~gl~~~~~~saGgsl~aa~~L~~g--~~~iAin~~GG~HHA~~~~AsGFCy~NdiaiAi~~Llk~--~ 175 (499)
. + +.|||+++++++++++++|+++.|++.+.+| +..+|++++|| |||++++|+||||||||||||++|+++ .
T Consensus 74 ~~~~~~~dt~~~~~~~~~a~~a~g~~l~a~~~v~~g~~~~~~a~~rppg-HHA~~~~a~GFC~~Nnvaiaa~~l~~~~~~ 152 (311)
T PF00850_consen 74 PNILDDGDTPISPGSWEAARLAAGGTLEAADAVLSGEIKNAFALVRPPG-HHAERDRAMGFCYFNNVAIAAKYLRKKYGL 152 (311)
T ss_dssp CCBTSSSSSEBCTTHHHHHHHHHHHHHHHHHHHHTTSSSEEEEEESS---TT-BTTBBBTTBSS-HHHHHHHHHHHTTTT
T ss_pred ccccCCCCcceehHHHHHHHHHHHHHHHHHHhhhcccccceeeecCccc-cccCcCcCcceeeeccHHHHHHHHhhcccc
Confidence 1 1 6799999999999999999999999999999 45678887776 999999999999999999999999985 3
Q ss_pred CcEEEEEccccCCccchhccccCCCEEEeecCCC-CCCCC-CCCCCccccCCCCCceeeccCCCCCCChHHHHHHHHHHH
Q 010834 176 ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF-GDYFP-GTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPII 253 (499)
Q Consensus 176 ~RVl~IDiDvHHGDGtqeaF~~d~rVltiS~H~~-g~ffP-gTG~~~eiG~g~G~g~~vNVPL~~G~~D~~y~~~f~~iv 253 (499)
+||+|||||+|||||||++||+|++|||+|||++ +.||| +||..+++|.++|++|++||||++|++|++|+.+|+++|
T Consensus 153 ~rV~iiD~DvHhGnGtq~if~~d~~V~~~SiH~~~~~~yP~~tG~~~e~G~~~g~g~~~NipL~~g~~d~~y~~~~~~~l 232 (311)
T PF00850_consen 153 KRVAIIDFDVHHGNGTQEIFYDDPRVLYISIHQYPGNFYPFGTGFPDEIGEGKGKGYNLNIPLPPGTGDDEYLEAFEEIL 232 (311)
T ss_dssp SSEEEEE-SSS--HHHHHHTTT-SSEEEEEEEE-CTTSTTTSS--TT--ESGGGTTSEEEEEE-TTEBHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCcccchhheeCCCCEEecCccccccccCCCcCCCccccCCCcccceeEecccccccchHHHHHHHhhcc
Confidence 8999999999999999999999999999999998 56999 999999999999999999999999999999999999999
Q ss_pred HhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhcCC----CEEEEeCCCCCCchhhHHHHHHHHHHc
Q 010834 254 GKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNV----PLLLLGGGGYTIRNVARCWCYETGVAL 328 (499)
Q Consensus 254 ~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~~~----pll~lggGGY~~~~vAr~w~~~t~~ll 328 (499)
.|++++|+||+||||||||++.+||+|.|+||++||.+++++|+++.. |+|++|||||++.++++||+.++++|.
T Consensus 233 ~~~~~~f~P~~ivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~~~~~a~~~~~~~v~vleGGY~~~~~~~~~~~~~~~L~ 311 (311)
T PF00850_consen 233 LPALEEFRPDLIVVSAGFDAHAGDPLGGLNLTPEGYRELTRRLKSLAKRHCIPVVSVLEGGYNPESLARSWAAVIAALA 311 (311)
T ss_dssp HHHHHHHT-SEEEEEE-STTBTTSTT-SEBB-HHHHHHHHHHHHTTHSHHSGCEEEEE-S-SSHHHHHHHHHHHHHHH-
T ss_pred ccchhcccCcEEEEccCcccchhccccCcCCCHHHHHHHHHHHHHHHHhcCCcEEEEECCCCChhHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999988744 999999999999999999999999873
No 6
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics]
Probab=100.00 E-value=1.4e-47 Score=425.85 Aligned_cols=288 Identities=25% Similarity=0.413 Sum_probs=237.2
Q ss_pred CCCCCCchHHHHHHHHHHHcCCCCCcEEeCCCCCCHHHHhccchHHHHHHHHhcCchhhHHHH--HHhhhcccCCCCcCC
Q 010834 34 QGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQL--RQLKRFNVGEDCPVF 111 (499)
Q Consensus 34 ~~HP~~P~R~~~i~~ll~~~gL~~~~~i~~p~~As~eeL~~~Hs~eYv~~L~~~~~~~~~~~~--~~l~~f~l~~Dcpvf 111 (499)
.+||..|.| .+..+. +||+.+|+-+ ||.++++.||+..|+..+.+.-........ .....-+++ +.
T Consensus 463 ~~~~~~p~r--~~t~~~--~gl~~~c~r~----at~~el~~vHs~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~----~~ 530 (797)
T KOG1343|consen 463 SRSPESPAR--FTTGLH--TGLLGKCERI----ATLEELQLVHSEAHVLLYGSRKLLGDLSLKFESRLPCGGIG----VD 530 (797)
T ss_pred cCCcccchh--hhcccc--cccccccccc----cchhhhhhcccchhhcccchhhhcccccchhhhhcccccee----ec
Confidence 478999999 333333 8999999877 999999999999999986522110000000 000001111 22
Q ss_pred cchHHHHHHHHHHHHHHHHHH--hcCcc--ceeeecCCCCCCcccCCCCcceeechHHHHHHHHHhcC--CcEEEEEccc
Q 010834 112 DGLFSFCQTYAGGSVGGAVKL--NHGLC--DIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQH--ERVLYVDIDI 185 (499)
Q Consensus 112 ~gl~~~~~~saGgsl~aa~~L--~~g~~--~iAin~~GG~HHA~~~~AsGFCy~NdiaiAi~~Llk~~--~RVl~IDiDv 185 (499)
...|.....++|+...++..+ +.++. .+|+.+++| |||....++|||+|||+|||+.+|.... .|||||||||
T Consensus 531 ~dt~~~~~~ssga~~~av~~v~~~~~~~~~g~avvRppG-Hha~~~~a~gfc~fn~vaiaak~l~~~~~~~rilivdwDv 609 (797)
T KOG1343|consen 531 SDTWWNELHSSGAARLAVGCVIELAFKVASGFAVVRPPG-HHAEASTAMGFCFFNSVAIAAKLLQQRSKASRILIVDWDV 609 (797)
T ss_pred ccHHHHHHHHHHHHHHhcchhhhhhhhhhcceeEecCCc-cccccCCcceeeeecchhhhhHHhhhhhhhcceEEEeecc
Confidence 344555555555555555444 11222 289999999 9999999999999999999999988654 8999999999
Q ss_pred cCCccchhccccCCCEEEeecCCC--CCCCCCCCCCccccCCCCCceeeccCCCCCCC-hHHHHHHHHHHHHhHHhhcCC
Q 010834 186 HHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGTGDIRDIGYSKGKFYSLNVPLDDGID-DESYHYLFKPIIGKVMEVFRP 262 (499)
Q Consensus 186 HHGDGtqeaF~~d~rVltiS~H~~--g~ffPgTG~~~eiG~g~G~g~~vNVPL~~G~~-D~~y~~~f~~iv~pv~~~f~P 262 (499)
|||||||.+||.+++||++|+|++ |+|||++|..+++|.+.|+++++|||++.|.. |.+|+.+|+.+++|++++|+|
T Consensus 610 hhgngtq~~f~~~~~vlyislhr~~~G~~fp~~g~~~e~g~~~g~g~~vNv~~~~~~~~D~ey~~a~~~vv~Pia~~F~p 689 (797)
T KOG1343|consen 610 HHGNGTQQAFYSDPSVLYISLHRHDDGNFFPGSGAPDEVGKGEGVGFNVNVAWTGGLDPDAEYLAAFRTVVMPIAYEFNP 689 (797)
T ss_pred cCCcceeeeeccCccccccccchhccCCcCCCCCCchhcccccccceeecccccCCCCCCHHHHHHHHHhhHHHHHHhCC
Confidence 999999999999999999999999 78999999999999999999999999987544 699999999999999999999
Q ss_pred cEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhc-CCCEEEEeCCCCCCchhhHHHHHHHHHHcCCCCCC
Q 010834 263 GAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSF-NVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDD 334 (499)
Q Consensus 263 dlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~-~~pll~lggGGY~~~~vAr~w~~~t~~llg~~~~~ 334 (499)
|+|++++|||+..+||||+..+|.++|+.+++.|+.+ ++++++.++|||+..+++++...++..|+|.+.+.
T Consensus 690 d~VlvSagfDaa~~dplg~~~vt~~~~~~lt~~l~~lagGRvv~~LEggy~lt~is~s~~~~~~~llg~~~p~ 762 (797)
T KOG1343|consen 690 DLVLVSAGFDAAEGDPLGGYKVTAECFGYLTQQLMGLAGGRVVLALEGGYDLTAISDSAEACVRALLGDSLPP 762 (797)
T ss_pred CeEEEeccccccccCccccccccHhHHHHHHHHHHHhcCCcEEEEecCCcchhhhhHHHHHHHHhccCCCCCC
Confidence 9999999999999999999999999999999999887 78999999999999999999999999999987765
No 7
>KOG1344 consensus Predicted histone deacetylase [Chromatin structure and dynamics]
Probab=100.00 E-value=5.5e-41 Score=323.42 Aligned_cols=291 Identities=29% Similarity=0.465 Sum_probs=239.1
Q ss_pred CCeEEEEEcCCCCCCCCC--CCCCCCchHHHHHHHHHHHcCCCCCcEEeCCCCCCHHHHhccchHHHHHHHHhcCchhhH
Q 010834 16 KRKVCYFYDPEVGNYYYG--QGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQ 93 (499)
Q Consensus 16 ~~~v~~~yd~~~~~~~~g--~~HP~~P~R~~~i~~ll~~~gL~~~~~i~~p~~As~eeL~~~Hs~eYv~~L~~~~~~~~~ 93 (499)
-.|+.++|+++|.--..| ..||+...+...++++|.+.+++..-.+++|..+|.++|+++|+.+|++.|+..-.-.+.
T Consensus 13 ~~k~pIvyS~~Y~i~FmGlEkLHPFDa~Kwg~v~kfL~~~~~l~d~~lvEp~e~t~e~L~rvHtr~YLkslr~s~~vA~I 92 (324)
T KOG1344|consen 13 AGKLPIVYSRNYAIRFMGLEKLHPFDAAKWGHVHKFLCAMNLLTDETLVEPNEATKEDLLRVHTRKYLKSLRWSIKVAQI 92 (324)
T ss_pred cccccEEecCccceeecchhhcCcCcccchhHHHHHHHHhccccccccccCcccCHHHHHhHhhHHHHHHhhccceeeEE
Confidence 457999999999654444 679999999999999999999999889999999999999999999999999864221110
Q ss_pred HHHHHhhhcccCCCCcCCcchHHHHHHHHHHHHHHHHH-HhcCccceeeecCCCCCCcccCCCCcceeechHHHHHHHHH
Q 010834 94 DQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVK-LNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELL 172 (499)
Q Consensus 94 ~~~~~l~~f~l~~Dcpvf~gl~~~~~~saGgsl~aa~~-L~~g~~~iAin~~GG~HHA~~~~AsGFCy~NdiaiAi~~Ll 172 (499)
.+..-.+.-..|.+-..+....++.||||+.|++. +.+| +|||..||+|||..+++.|||.+.||.+||..|.
T Consensus 93 ---~EiP~v~flPn~~iqrk~LrPlR~QagGtilA~kLAle~G---WAINvGGGFHHcss~rGGGFC~yADItl~I~~lF 166 (324)
T KOG1344|consen 93 ---TEIPFVGFLPNCIIQRKLLRPLRLQAGGTILAAKLALERG---WAINVGGGFHHCSSSRGGGFCAYADITLAIFFLF 166 (324)
T ss_pred ---EeccccccCchhhhhhhhccceeeccCceeehhhhhhhcC---eEEeecCccceeccCCCCceeehhhHHHHHHHHH
Confidence 01111233355666677777778899999999974 5556 9999999999999999999999999999998876
Q ss_pred hc--CCcEEEEEccccCCccchhccccCCCEEEeecCCCCCCCCCCCCCccccCCCCCceeeccCCCCCCChHHHHHHHH
Q 010834 173 KQ--HERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFK 250 (499)
Q Consensus 173 k~--~~RVl~IDiDvHHGDGtqeaF~~d~rVltiS~H~~g~ffPgTG~~~eiG~g~G~g~~vNVPL~~G~~D~~y~~~f~ 250 (499)
.+ ..|++|||+|+|+|||.|.-|.++ .|..+.+... -.||+.-...+ .-...|.|..|+.|++|+.-++
T Consensus 167 er~~isr~mivDLDAHQGNghErdf~~~-~vyi~d~ynr-~iyp~D~~Ak~-------~Ir~kVEl~~gTeddeYLrkl~ 237 (324)
T KOG1344|consen 167 ERKAISRAMIVDLDAHQGNGHERDFEDD-AVYIFDMYNR-FIYPRDHVAKE-------SIRCKVELRNGTEDDEYLRKLK 237 (324)
T ss_pred hhhhhhheEEEecccccCCccccccccc-eeehhhhhhh-hccchhHHHHH-------HhhheeeeecCCCchHHHHHHH
Confidence 54 589999999999999999999877 6666554332 36887644332 1245678899999999999999
Q ss_pred HHHHhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHH----HHHHHHhcCCCEEEEeCCCCCCchhhHHHHH
Q 010834 251 PIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAE----CVKFMRSFNVPLLLLGGGGYTIRNVARCWCY 322 (499)
Q Consensus 251 ~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~----~~~~l~~~~~pll~lggGGY~~~~vAr~w~~ 322 (499)
+.++....+|+||+||+.||.|.+.|||||.+.+|++|..+ ++++.+..++|+++|..|||-. ..||-.+-
T Consensus 238 r~l~~sl~ef~Pd~VvYNAGTDiLeGDpLG~L~ISp~Gi~~RDelVFr~~R~~~iPvvMltSGGY~K-~sArvIaD 312 (324)
T KOG1344|consen 238 RCLMQSLAEFRPDMVVYNAGTDILEGDPLGNLAISPEGIIERDELVFRTFRALGIPVVMLTSGGYLK-ASARVIAD 312 (324)
T ss_pred HHHHHHHHhhCCcEEEEeCCCccccCCCCCCeeecccccchhhHHHHHHHHHcCCcEEEEecCceeh-hhhhhhHH
Confidence 99999999999999999999999999999999999999976 4567788899999999999975 34444433
No 8
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics]
Probab=100.00 E-value=3.9e-34 Score=318.65 Aligned_cols=313 Identities=21% Similarity=0.277 Sum_probs=259.7
Q ss_pred CeEEEEEcCCCCCCCC--CCCCC-CCchHHHHHHHHHHHcCCCCCcEEeCC-CCCCHHHHhccchHHHHHHHHhcCchhh
Q 010834 17 RKVCYFYDPEVGNYYY--GQGHP-MKPHRIRMTHALLAHYGLLQNMQVLKP-FPARERDLCRFHADDYVSFLRSITPETQ 92 (499)
Q Consensus 17 ~~v~~~yd~~~~~~~~--g~~HP-~~P~R~~~i~~ll~~~gL~~~~~i~~p-~~As~eeL~~~Hs~eYv~~L~~~~~~~~ 92 (499)
+++.++|++....|.. ...|+ ++++|++.+.+.+.+.++...+.+..+ +.|+.++++.+|+++|++++........
T Consensus 29 ~~~~l~~~~~~~~h~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~ke~~~~~~~t~~~~~ 108 (797)
T KOG1343|consen 29 IQKQLLFAEFQKQHENQQELLEKEEKLERLRQIEEELERHRLEQPLLILRNKREAKESAVASVHVKEKLQEFLLSKKMTA 108 (797)
T ss_pred hhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHHhhccCCccccccccchhhcccchhcccccHHHHHHHHhhhhhcc
Confidence 4688899988877642 33444 888999999999999999888877777 8999999999999999999876542211
Q ss_pred HHHHHHhhhcccCCCCcCCcchHHHHHHHHHHHHHHHHHHhcCcc--ceeeecCCCCCCcccCCCCcceeechHHHHHHH
Q 010834 93 QDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLC--DIAINWAGGLHHAKKCEASGFCYVNDIVLAILE 170 (499)
Q Consensus 93 ~~~~~~l~~f~l~~Dcpvf~gl~~~~~~saGgsl~aa~~L~~g~~--~iAin~~GG~HHA~~~~AsGFCy~NdiaiAi~~ 170 (499)
.+..... -.-.+.+++....+..+..++|+.+...+.+..|+. ..|+.+++| |||.++...|||+|||||++...
T Consensus 109 e~~l~~~--~~~~~~~~~~~~s~~~a~~a~~~~~~~~~~~~~~~~~n~~a~v~p~~-hhsep~~~~~~cl~n~Va~~~~~ 185 (797)
T KOG1343|consen 109 EEGLNHS--SSRYPSLYYTSASHSSADQASGSLSGSYKAVLAGKASNGKADFRPPG-HHSEPNLKVGFCLFNNVAERRSS 185 (797)
T ss_pred hhhhhcc--cCCCCcceecCCchhhhcccCcccccccccccCCcccCccCcCCCCC-CccccchhcchhHHHHHHHHhhc
Confidence 1111110 011234555666777788888988887776666643 367788888 99999999999999999999986
Q ss_pred HHhcC--CcEEEEEccccCCccchhcccc--CCCEEEeecCCC--CCCCCC--CCCCccccCCCCCceeeccCCCC-CCC
Q 010834 171 LLKQH--ERVLYVDIDIHHGDGVEEAFYT--TDRVMTVSFHKF--GDYFPG--TGDIRDIGYSKGKFYSLNVPLDD-GID 241 (499)
Q Consensus 171 Llk~~--~RVl~IDiDvHHGDGtqeaF~~--d~rVltiS~H~~--g~ffPg--TG~~~eiG~g~G~g~~vNVPL~~-G~~ 241 (499)
.+-.+ +||+++|||+|||+|||..|++ |++|+++|+|++ +.|||. +|....+|.|.|.+|++|+|+.. |++
T Consensus 186 ~~~~~~~rri~i~d~dvh~g~Gtq~~~~~~~d~~vl~~s~~r~e~~~f~P~~~~g~~~~~~~g~~~g~~~nl~~~~~g~~ 265 (797)
T KOG1343|consen 186 PLLRRKKRRILIVDWDVHHGPGTQPSSPNNGDQRVLYFSLHRLETGPFLPNITLGLATLRGGGPGLGQTGNLPWNQVGMT 265 (797)
T ss_pred cccccccceeEeecccccCCCCCCCccCCCcccccccccchhcccCCcCCCCccchHHHhCcCCCcceeeccchhhcCCc
Confidence 55444 9999999999999999999999 999999999999 779998 48889999999999999999975 999
Q ss_pred hHHHHHHHHHHHHhHHhhcCCcEEEEecCCCCCCCCC-CCccccCHHhHHHHHHHHHhcC-CCEEEEeCCCCCCchhhHH
Q 010834 242 DESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDR-LGCFNLSIKGHAECVKFMRSFN-VPLLLLGGGGYTIRNVARC 319 (499)
Q Consensus 242 D~~y~~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDp-LG~~nLS~~g~~~~~~~l~~~~-~pll~lggGGY~~~~vAr~ 319 (499)
|.+|.++|..++.|...+|+|++|+++||+|++.||+ +|.+..|+.+|+..+...+-.+ +++.++++|||+....+..
T Consensus 266 ~~dy~~~~~~~~~~~~~efqp~Lv~~sag~dA~lg~~~~~~m~~tP~~~~~~~~~~~~~~r~~l~v~~e~gy~le~l~~~ 345 (797)
T KOG1343|consen 266 DADYEAAFLHVLLPHASEFQPDLLLVSAGFDALLGDGPVGLMAQTPLGYAHRTSMHRPLGRGQLVVVLEGGYFLEKLAQS 345 (797)
T ss_pred chhhhhhhhccCccchhhcCcceEEeeccccccccCcccCcccCCcccHHHHhccccccccCccceecchhHHHHHHHHh
Confidence 9999999999999999999999999999999999997 6999999999999999865556 8999999999999999987
Q ss_pred HHHHHHHHcCCCCC
Q 010834 320 WCYETGVALGVEVD 333 (499)
Q Consensus 320 w~~~t~~llg~~~~ 333 (499)
......++|.+.+
T Consensus 346 -~~~~~~llg~~~~ 358 (797)
T KOG1343|consen 346 -QLVLNKLLGKPIE 358 (797)
T ss_pred -hhhHHhhcCCCcc
Confidence 5566677886553
No 9
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=76.30 E-value=8.4 Score=35.22 Aligned_cols=49 Identities=24% Similarity=0.430 Sum_probs=30.1
Q ss_pred hHHhhcCCcEEEEecCC-CCCCCCCCCccccCHHhHHHHHHHHHhc--CCCEEEE
Q 010834 255 KVMEVFRPGAVVLQCGA-DSLSGDRLGCFNLSIKGHAECVKFMRSF--NVPLLLL 306 (499)
Q Consensus 255 pv~~~f~PdlIVvqaG~-Dsl~gDpLG~~nLS~~g~~~~~~~l~~~--~~pll~l 306 (499)
..+..++|++||+++|. |...+-+ ..-..+.+.++++.+++. +.+++++
T Consensus 44 ~~~~~~~p~~vvi~~G~ND~~~~~~---~~~~~~~~~~lv~~i~~~~~~~~iil~ 95 (171)
T cd04502 44 RLVLPYQPRRVVLYAGDNDLASGRT---PEEVLRDFRELVNRIRAKLPDTPIAII 95 (171)
T ss_pred hhhccCCCCEEEEEEecCcccCCCC---HHHHHHHHHHHHHHHHHHCCCCcEEEE
Confidence 34556899999999998 5433221 222344556677777664 4555555
No 10
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=75.78 E-value=22 Score=38.21 Aligned_cols=109 Identities=22% Similarity=0.348 Sum_probs=67.2
Q ss_pred HHHHHHHhcCCcEEEEEccccCCc----cchhccccCCCEEEeecCCCCCCCCCCCCCccccCCCCCcee------eccC
Q 010834 166 LAILELLKQHERVLYVDIDIHHGD----GVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYS------LNVP 235 (499)
Q Consensus 166 iAi~~Llk~~~RVl~IDiDvHHGD----GtqeaF~~d~rVltiS~H~~g~ffPgTG~~~eiG~g~G~g~~------vNVP 235 (499)
+.+.|+.|...|.+|||+|+-+|- |+-.++.-.. +-|+ -.||. .|+-
T Consensus 122 ~L~nyavk~gr~Plfv~LDvgQ~sitiPGsiaA~~i~~-------------------~~D~----~eGf~l~~pLV~~FG 178 (415)
T KOG2749|consen 122 ILLNYAVKQGRRPLFVELDVGQGSITIPGSIAAIPIEM-------------------PLDV----IEGFSLTAPLVYNFG 178 (415)
T ss_pred HHHHHHHHcCCcceEEEcCCCCCceecccchhheeccc-------------------ccch----hhCcccCCceeeecc
Confidence 445678888899999999996651 3333332110 0011 12233 3444
Q ss_pred C-CCCCChHHHHHHHHHHHHhHHhhc--CCc-----EEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhcCCCEEEEe
Q 010834 236 L-DDGIDDESYHYLFKPIIGKVMEVF--RPG-----AVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLG 307 (499)
Q Consensus 236 L-~~G~~D~~y~~~f~~iv~pv~~~f--~Pd-----lIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~~~pll~lg 307 (499)
+ .+..+-+-|..++.++-.-+-+++ +|+ +||=-|| |.. .+||+.++..++.|+.-+++|+
T Consensus 179 ~~sp~~N~~LY~~~~s~La~v~~~~~~~n~~ar~sG~iInT~g-----------~i~-~egy~~llhai~~f~v~vviVL 246 (415)
T KOG2749|consen 179 LTSPSTNLELYKALVSELAEVLKQRLSLNPEARVSGCIINTCG-----------WIE-GEGYAALLHAIKAFEVDVVIVL 246 (415)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHHHhccCchhcccceEEeccc-----------eec-cccHHHHHHHHHHcCccEEEEe
Confidence 4 356666778888777665555555 333 2332222 444 7899999999999999888888
Q ss_pred CC
Q 010834 308 GG 309 (499)
Q Consensus 308 gG 309 (499)
|-
T Consensus 247 g~ 248 (415)
T KOG2749|consen 247 GQ 248 (415)
T ss_pred cc
Confidence 75
No 11
>PTZ00346 histone deacetylase; Provisional
Probab=74.39 E-value=4.1 Score=44.42 Aligned_cols=41 Identities=7% Similarity=0.088 Sum_probs=32.4
Q ss_pred CCC-CCCCcchhhhccCCCccc--ccCCCCCCCcCcHHHHHHHH
Q 010834 331 EVD-DKMPQHEYYEYFGPDYTL--HVAPSNMENKNSRQLLEEIR 371 (499)
Q Consensus 331 ~~~-~~~P~~~y~~~~~p~~~l--~~~~~~~~~~n~~~~le~i~ 371 (499)
.+| +.+|+++||....|.+.+ ++.+.+....|..+-+++|.
T Consensus 344 ~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (429)
T PTZ00346 344 VLPVAEMPLSGWLFQDSPLLIVAQDRSNHVLPGLHCQRAYQMMT 387 (429)
T ss_pred CCCCCCCchhhhhcCCCccccccccccccCCCcchhHHHHHHHH
Confidence 356 688999999999999988 78888877777766555544
No 12
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=72.42 E-value=7.7 Score=39.65 Aligned_cols=63 Identities=16% Similarity=0.331 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCc
Q 010834 244 SYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIR 314 (499)
Q Consensus 244 ~y~~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~~~pll~lggGGY~~~ 314 (499)
+|.++|+..+ |-+..|+-..+||-.|-.++..| ++ +.+.+-+..+.+.+.+++++.|||....
T Consensus 1 ~~~~~~~~~~-~yi~~~~~~~~VIKlGG~ai~~~-----~l--~~~~~~ia~l~~~g~~~ViVHGggp~i~ 63 (280)
T cd04237 1 QFVDWFREAA-PYINAHRGKTFVIAFGGEAVAHP-----NF--DNIVHDIALLHSLGIRLVLVHGARPQID 63 (280)
T ss_pred ChHHHHHHHh-HHHHHhCCCEEEEEEChHHhcCc-----hH--HHHHHHHHHHHHCCCcEEEEeCCCHHHH
Confidence 3778888764 66889999999999998888754 22 3344455556667889999999988764
No 13
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=69.63 E-value=23 Score=32.90 Aligned_cols=74 Identities=18% Similarity=0.182 Sum_probs=39.9
Q ss_pred eccCCCCCCChHHHHHHHHHHHHhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHH-Hh--cCCCEEEE
Q 010834 232 LNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFM-RS--FNVPLLLL 306 (499)
Q Consensus 232 vNVPL~~G~~D~~y~~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l-~~--~~~pll~l 306 (499)
+|.-.. |.+-..++.-|...+......++||+|||..|..=.....-+....+.+.|.+.++.+ +. -+.+++++
T Consensus 41 ~N~gi~-G~t~~~~~~r~~~~~~~~~~~~~pd~V~i~~G~ND~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~vi~~ 117 (193)
T cd01835 41 YNLGVR-GDGSEDVAARWRAEWSRRGELNVPNRLVLSVGLNDTARGGRKRPQLSARAFLFGLNQLLEEAKRLVPVLVV 117 (193)
T ss_pred EeecCC-CCCHHHHHHHHHHHHHhhcccCCCCEEEEEecCcccccccCcccccCHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 354433 3334455655655554444458999999999986543321112235566666544433 22 24566554
No 14
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=69.38 E-value=1.1e+02 Score=34.97 Aligned_cols=168 Identities=19% Similarity=0.250 Sum_probs=99.0
Q ss_pred CCCCcceeec--hHHHHHHHHHhcCCcEEEEEccccCCccchhccccCCCEEEeecCCCCCCCCCCCCCccccCCCCCce
Q 010834 153 CEASGFCYVN--DIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFY 230 (499)
Q Consensus 153 ~~AsGFCy~N--diaiAi~~Llk~~~RVl~IDiDvHHGDGtqeaF~~d~rVltiS~H~~g~ffPgTG~~~eiG~g~G~g~ 230 (499)
....++|-++ |-+=+|...+...=-| -||+|.|-=|++-.+|...|--.-||.-. ||+|+....+ .|
T Consensus 311 a~~~~~~~~~~~dd~e~a~~I~~d~IdI-LvDl~g~T~d~r~~v~A~RpAPiqvswlG----y~aT~g~p~~------DY 379 (620)
T COG3914 311 AAVEKWYPIGRMDDAEIANAIRTDGIDI-LVDLDGHTVDTRCQVFAHRPAPIQVSWLG----YPATTGSPNM------DY 379 (620)
T ss_pred HhhhheeccCCcCHHHHHHHHHhcCCeE-EEeccCceeccchhhhhcCCCceEEeecc----cccccCCCcc------eE
Confidence 3456788888 3333334333332234 48999999999999999888777777555 4666542221 12
Q ss_pred eeccC--CCCCCChHHHHHHHHHHHHhHHhhc--------------------CCcEEEEecCCCCCCCCCCCccccCHHh
Q 010834 231 SLNVP--LDDGIDDESYHYLFKPIIGKVMEVF--------------------RPGAVVLQCGADSLSGDRLGCFNLSIKG 288 (499)
Q Consensus 231 ~vNVP--L~~G~~D~~y~~~f~~iv~pv~~~f--------------------~PdlIVvqaG~Dsl~gDpLG~~nLS~~g 288 (499)
-|-=| +|++. ..-|-..+ .++-.-| .+|++|..||- +.++.+++=
T Consensus 380 ~I~D~y~vPp~a-e~yysEkl----~RLp~cy~p~d~~~~v~p~~sR~~lglp~~avVf~c~~--------n~~K~~pev 446 (620)
T COG3914 380 FISDPYTVPPTA-EEYYSEKL----WRLPQCYQPVDGFEPVTPPPSRAQLGLPEDAVVFCCFN--------NYFKITPEV 446 (620)
T ss_pred EeeCceecCchH-HHHHHHHH----HhcccccCCCCCcccCCCCcchhhcCCCCCeEEEEecC--------CcccCCHHH
Confidence 22212 12222 22333222 2222111 45788888882 457788888
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCchhhHHHHHHHHHHcCCCC-----CCCCCcchhhhccC
Q 010834 289 HAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEV-----DDKMPQHEYYEYFG 346 (499)
Q Consensus 289 ~~~~~~~l~~~~~pll~lggGGY~~~~vAr~w~~~t~~llg~~~-----~~~~P~~~y~~~~~ 346 (499)
+..-.+.|+....-+++|.+||=+....++. -..+...|... -+..|..+++++|+
T Consensus 447 ~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l--~~la~~~Gv~~eRL~f~p~~~~~~h~a~~~ 507 (620)
T COG3914 447 FALWMQILSAVPNSVLLLKAGGDDAEINARL--RDLAEREGVDSERLRFLPPAPNEDHRARYG 507 (620)
T ss_pred HHHHHHHHHhCCCcEEEEecCCCcHHHHHHH--HHHHHHcCCChhheeecCCCCCHHHHHhhc
Confidence 8888889999888899999999665444442 22333455432 12334446777775
No 15
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=66.79 E-value=6.7 Score=36.32 Aligned_cols=43 Identities=26% Similarity=0.390 Sum_probs=30.4
Q ss_pred cccCCCCcceee----chHHH-HHHHHHhcC--CcEEEEEccccCCccch
Q 010834 150 AKKCEASGFCYV----NDIVL-AILELLKQH--ERVLYVDIDIHHGDGVE 192 (499)
Q Consensus 150 A~~~~AsGFCy~----Ndiai-Ai~~Llk~~--~RVl~IDiDvHHGDGtq 192 (499)
-.+-.++|||+| ++-|. |++++-... +|++-||||.-.=+|-|
T Consensus 72 r~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~GF~eGRQ 121 (153)
T KOG0121|consen 72 RFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDAGFVEGRQ 121 (153)
T ss_pred cCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccccchhhhh
Confidence 345678999987 45554 445554332 89999999987777766
No 16
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=65.20 E-value=20 Score=32.87 Aligned_cols=51 Identities=24% Similarity=0.403 Sum_probs=31.0
Q ss_pred HHHhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhH----HHHHHHHHhc--CCCEEEEe
Q 010834 252 IIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGH----AECVKFMRSF--NVPLLLLG 307 (499)
Q Consensus 252 iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~----~~~~~~l~~~--~~pll~lg 307 (499)
.+...+...+||+|||++|..=.. ....+.+.| ..+++.+++. +.++++++
T Consensus 47 ~~~~~l~~~~pd~Vii~~G~ND~~-----~~~~~~~~~~~~~~~li~~i~~~~~~~~iv~~~ 103 (189)
T cd01825 47 FLQAQLAALPPDLVILSYGTNEAF-----NKQLNASEYRQQLREFIKRLRQILPNASILLVG 103 (189)
T ss_pred HHHHHHhhCCCCEEEEECCCcccc-----cCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEc
Confidence 344466789999999999965432 222344444 4556666663 55666653
No 17
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=64.48 E-value=24 Score=32.06 Aligned_cols=42 Identities=17% Similarity=0.271 Sum_probs=26.3
Q ss_pred hcCCcEEEEecCCCCCCCCCCCccccCHH----hHHHHHHHHHh--cCCCEEEE
Q 010834 259 VFRPGAVVLQCGADSLSGDRLGCFNLSIK----GHAECVKFMRS--FNVPLLLL 306 (499)
Q Consensus 259 ~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~----g~~~~~~~l~~--~~~pll~l 306 (499)
.++||+||+++|..=. ... .+.+ .+.++++.+++ -+.+++++
T Consensus 46 ~~~pd~vvl~~G~ND~----~~~--~~~~~~~~~l~~li~~~~~~~~~~~vi~~ 93 (169)
T cd01828 46 ALQPKAIFIMIGINDL----AQG--TSDEDIVANYRTILEKLRKHFPNIKIVVQ 93 (169)
T ss_pred ccCCCEEEEEeeccCC----CCC--CCHHHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 6799999999996432 222 3343 44456666666 35666664
No 18
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=63.93 E-value=85 Score=29.71 Aligned_cols=16 Identities=19% Similarity=0.347 Sum_probs=12.9
Q ss_pred hcCCcEEEEEccccCC
Q 010834 173 KQHERVLYVDIDIHHG 188 (499)
Q Consensus 173 k~~~RVl~IDiDvHHG 188 (499)
+...||++||.|....
T Consensus 44 ~~G~rVllID~D~~~~ 59 (204)
T TIGR01007 44 QAGYKTLLIDGDMRNS 59 (204)
T ss_pred hCCCeEEEEeCCCCCh
Confidence 4468999999998754
No 19
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=63.37 E-value=26 Score=32.15 Aligned_cols=61 Identities=13% Similarity=0.240 Sum_probs=33.1
Q ss_pred CChHHHHHHHHHHHHhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHH----HHHHHHHhcCCCEEEE
Q 010834 240 IDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHA----ECVKFMRSFNVPLLLL 306 (499)
Q Consensus 240 ~~D~~y~~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~----~~~~~l~~~~~pll~l 306 (499)
++......++...+..++ .++||+|||..|..=... -..+.+.|. .+++.++..+.+++++
T Consensus 47 ~~G~~~~~~~~~~~~~~~-~~~~d~vii~~G~ND~~~-----~~~~~~~~~~~~~~~i~~i~~~~~~vil~ 111 (185)
T cd01832 47 VRGRRTAQILAEQLPAAL-ALRPDLVTLLAGGNDILR-----PGTDPDTYRADLEEAVRRLRAAGARVVVF 111 (185)
T ss_pred CCcchHHHHHHHHHHHHH-hcCCCEEEEecccccccc-----CCCCHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 333333333444444443 479999999999742211 134545444 4555556446666655
No 20
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=59.86 E-value=38 Score=30.63 Aligned_cols=46 Identities=20% Similarity=0.403 Sum_probs=29.8
Q ss_pred hHHhhcCCcEEEEecCCCCCCCCCCCccccCHHh----HHHHHHHHHhcCCCEEEE
Q 010834 255 KVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKG----HAECVKFMRSFNVPLLLL 306 (499)
Q Consensus 255 pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g----~~~~~~~l~~~~~pll~l 306 (499)
..+..++||+|||+.|.. |.... .+.+. +.++++.+++.+.+++++
T Consensus 58 ~~~~~~~pd~v~i~~G~N----D~~~~--~~~~~~~~~l~~li~~~~~~~~~vil~ 107 (177)
T cd01822 58 ALLAQHKPDLVILELGGN----DGLRG--IPPDQTRANLRQMIETAQARGAPVLLV 107 (177)
T ss_pred HHHHhcCCCEEEEeccCc----ccccC--CCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 345568999999999975 32222 33333 445667777777777766
No 21
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=59.04 E-value=30 Score=32.02 Aligned_cols=61 Identities=16% Similarity=0.163 Sum_probs=35.2
Q ss_pred CCChHHHHHHHHHHHHhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHh--cCCCEEEE
Q 010834 239 GIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRS--FNVPLLLL 306 (499)
Q Consensus 239 G~~D~~y~~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~--~~~pll~l 306 (499)
|..-.+++..++. +..++||+|+|..|..=+... ....-..+.+.++++.+++ -+.+++++
T Consensus 50 G~t~~~~~~~l~~-----~~~~~pd~Vii~~G~ND~~~~--~~~~~~~~~l~~li~~i~~~~~~~~iiv~ 112 (191)
T cd01836 50 GATSADLLRQLAP-----LPETRFDVAVISIGVNDVTHL--TSIARWRKQLAELVDALRAKFPGARVVVT 112 (191)
T ss_pred CcCHHHHHHHHHh-----cccCCCCEEEEEecccCcCCC--CCHHHHHHHHHHHHHHHHhhCCCCEEEEE
Confidence 3344555554443 456899999999998433211 1112223455567777776 35666665
No 22
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=58.34 E-value=68 Score=29.58 Aligned_cols=14 Identities=21% Similarity=0.439 Sum_probs=12.7
Q ss_pred CcEEEEEccccCCc
Q 010834 176 ERVLYVDIDIHHGD 189 (499)
Q Consensus 176 ~RVl~IDiDvHHGD 189 (499)
+||++||.|.+.++
T Consensus 25 ~~vlliD~D~~~~~ 38 (179)
T cd03110 25 KNVVLADCDVDAPN 38 (179)
T ss_pred hCcEEEECCCCCCc
Confidence 69999999999876
No 23
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=58.19 E-value=22 Score=34.45 Aligned_cols=19 Identities=37% Similarity=0.485 Sum_probs=15.3
Q ss_pred HHhcCCcEEEEEccccCCc
Q 010834 171 LLKQHERVLYVDIDIHHGD 189 (499)
Q Consensus 171 Llk~~~RVl~IDiDvHHGD 189 (499)
|.+...||++||+|.++||
T Consensus 25 la~~g~~VlliD~D~~~~~ 43 (251)
T TIGR01969 25 LAKLGKKVLALDADITMAN 43 (251)
T ss_pred HHHCCCeEEEEeCCCCCcc
Confidence 3345689999999998876
No 24
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=57.67 E-value=15 Score=39.53 Aligned_cols=62 Identities=19% Similarity=0.344 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCc
Q 010834 245 YHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIR 314 (499)
Q Consensus 245 y~~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~~~pll~lggGGY~~~ 314 (499)
|...|++. .|-+..|+=..+||=+|-.++..+. + ..+.+-+.+++..+.++++|.|||+.+.
T Consensus 1 ~~~~~~~~-~~~i~~~~~~~~ViK~GG~~~~~~~-----~--~~~~~~i~~l~~~g~~~vlVHGgg~~i~ 62 (429)
T TIGR01890 1 FVAWFREA-APYINAHRGKTFVVGLGGELVEGGN-----L--GNIVADIALLHSLGVRLVLVHGARPQIE 62 (429)
T ss_pred ChhHHhhh-hHHHHHhCCCEEEEEEChhhccCcc-----H--HHHHHHHHHHHHCCCcEEEEcCCCHHHH
Confidence 45667665 4778899999999999987775432 1 2355556677778889999999996653
No 25
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=57.46 E-value=41 Score=32.26 Aligned_cols=24 Identities=0% Similarity=0.213 Sum_probs=19.0
Q ss_pred HHHHHHHHhHHhhcCCcEEEEecC
Q 010834 247 YLFKPIIGKVMEVFRPGAVVLQCG 270 (499)
Q Consensus 247 ~~f~~iv~pv~~~f~PdlIVvqaG 270 (499)
..++.++..+.++|++|+||+-|+
T Consensus 134 ~~l~~~l~~l~~~y~~D~IiiD~p 157 (207)
T TIGR03018 134 QRMRSLLHELARRYPDRIIIIDTP 157 (207)
T ss_pred HHHHHHHHHHHhhCCCCEEEEECC
Confidence 346677777778888899999887
No 26
>PRK05279 N-acetylglutamate synthase; Validated
Probab=56.96 E-value=28 Score=37.64 Aligned_cols=64 Identities=16% Similarity=0.325 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCch
Q 010834 244 SYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRN 315 (499)
Q Consensus 244 ~y~~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~~~pll~lggGGY~~~~ 315 (499)
.|...|+..+ |-+..|+=..+||-+|-.++..+ ++ +.+..-+..++..+.++++|.|||.....
T Consensus 8 ~~~~~~~~~~-~~i~~~~~~~~VIk~GG~~l~~~-----~~--~~~~~~i~~l~~~g~~~VlVHGgg~~i~~ 71 (441)
T PRK05279 8 EFVDWFRHSA-PYINAHRGKTFVIMLGGEAIAHG-----NF--SNIVHDIALLHSLGIRLVLVHGARPQIEE 71 (441)
T ss_pred HHHHHHHHHh-HHHHHhCCCEEEEEECchhccCh-----hH--HHHHHHHHHHHHCCCeEEEECCCCHHHHH
Confidence 5788888765 56788888899999998888543 12 33445555667778899999999987654
No 27
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=56.93 E-value=46 Score=30.53 Aligned_cols=47 Identities=13% Similarity=0.273 Sum_probs=28.4
Q ss_pred HhhcCCcEEEEecCCCCCCCC-CCCccccCHHhHHHHHHHHHhcCCCEEEE
Q 010834 257 MEVFRPGAVVLQCGADSLSGD-RLGCFNLSIKGHAECVKFMRSFNVPLLLL 306 (499)
Q Consensus 257 ~~~f~PdlIVvqaG~Dsl~gD-pLG~~nLS~~g~~~~~~~l~~~~~pll~l 306 (499)
+...+||+||++.|..=.... ++.. -.+.+.++++.+++.+.+++++
T Consensus 55 ~~~~~~d~v~i~~G~ND~~~~~~~~~---~~~~~~~li~~~~~~~~~~il~ 102 (183)
T cd04501 55 VIALKPAVVIIMGGTNDIIVNTSLEM---IKDNIRSMVELAEANGIKVILA 102 (183)
T ss_pred HHhcCCCEEEEEeccCccccCCCHHH---HHHHHHHHHHHHHHCCCcEEEE
Confidence 345799999999997643321 1111 1334445666677767766665
No 28
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=56.78 E-value=21 Score=30.67 Aligned_cols=47 Identities=13% Similarity=0.202 Sum_probs=29.7
Q ss_pred HhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhcCCCEEEEeCCCC
Q 010834 254 GKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGY 311 (499)
Q Consensus 254 ~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~~~pll~lggGGY 311 (499)
...+.+++||+|.+++- +.-+.....++++.+|+.+-.+.++.||.+
T Consensus 44 ~~~~~~~~pd~V~iS~~-----------~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~ 90 (121)
T PF02310_consen 44 VEALRAERPDVVGISVS-----------MTPNLPEAKRLARAIKERNPNIPIVVGGPH 90 (121)
T ss_dssp HHHHHHTTCSEEEEEES-----------SSTHHHHHHHHHHHHHTTCTTSEEEEEESS
T ss_pred HHHHhcCCCcEEEEEcc-----------CcCcHHHHHHHHHHHHhcCCCCEEEEECCc
Confidence 34567789999999875 222334456677777776444455555554
No 29
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=55.13 E-value=23 Score=33.90 Aligned_cols=49 Identities=24% Similarity=0.316 Sum_probs=28.1
Q ss_pred HHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhc--CCCEEEE
Q 010834 256 VMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSF--NVPLLLL 306 (499)
Q Consensus 256 v~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~--~~pll~l 306 (499)
.+..++|++|||.+|..=..... ...-..+.+.++++.+++. +.+++++
T Consensus 84 ~l~~~~pd~VvI~~G~ND~~~~~--~~~~~~~~l~~ii~~l~~~~P~~~Iil~ 134 (214)
T cd01820 84 ELDGVNPKVVVLLIGTNNIGHTT--TAEEIAEGILAIVEEIREKLPNAKILLL 134 (214)
T ss_pred CccCCCCCEEEEEecccccCCCC--CHHHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 34568999999999986543210 1111223445566666654 4555554
No 30
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=54.79 E-value=44 Score=30.39 Aligned_cols=69 Identities=19% Similarity=0.166 Sum_probs=37.8
Q ss_pred eeccCCCCCCChHHHHHHHHHHHHhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhc--CCCEEEE
Q 010834 231 SLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSF--NVPLLLL 306 (499)
Q Consensus 231 ~vNVPL~~G~~D~~y~~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~--~~pll~l 306 (499)
.+|......+ -..++..+ .+.+..++||+|||..|..=+.... ...-..+.+.++++.+++. +.+++++
T Consensus 26 v~n~g~~G~t-~~~~~~~~----~~~~~~~~pd~v~i~~G~ND~~~~~--~~~~~~~~~~~l~~~~~~~~p~~~vi~~ 96 (174)
T cd01841 26 VNNLGIAGIS-SRQYLEHI----EPQLIQKNPSKVFLFLGTNDIGKEV--SSNQFIKWYRDIIEQIREEFPNTKIYLL 96 (174)
T ss_pred EEeccccccc-HHHHHHHH----HHHHHhcCCCEEEEEeccccCCCCC--CHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 4666554433 23333333 3344568999999999985443221 1222344555677766653 4555554
No 31
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=53.91 E-value=57 Score=30.76 Aligned_cols=59 Identities=19% Similarity=0.296 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhc---CCCEEEEeC
Q 010834 242 DESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSF---NVPLLLLGG 308 (499)
Q Consensus 242 D~~y~~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~---~~pll~lgg 308 (499)
..+...+|+.++.. +.+.+||+||+ +| |... ....+...+..+.+.++++ ++|+.++.|
T Consensus 23 ~~~~~~~~~~~~~~-~~~~~~d~i~~-~G-D~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G 84 (223)
T cd00840 23 REDQFEAFEEIVEL-AIEEKVDFVLI-AG-DLFD-----SNNPSPEALELLIEALRRLKEAGIPVFIIAG 84 (223)
T ss_pred hHHHHHHHHHHHHH-HHhcCCCEEEE-CC-cccC-----CCCCCHHHHHHHHHHHHHHHHCCCCEEEecC
Confidence 35677888887755 56679998665 33 4433 3333444455566666555 789887765
No 32
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=53.67 E-value=32 Score=32.57 Aligned_cols=50 Identities=8% Similarity=0.141 Sum_probs=28.6
Q ss_pred HHhhcCCcEEEEecCCCCCCCCCCC--ccccCH----HhHHHHHHHHHhcCCCEEE
Q 010834 256 VMEVFRPGAVVLQCGADSLSGDRLG--CFNLSI----KGHAECVKFMRSFNVPLLL 305 (499)
Q Consensus 256 v~~~f~PdlIVvqaG~Dsl~gDpLG--~~nLS~----~g~~~~~~~l~~~~~pll~ 305 (499)
++..-+|++|||.+|..=+.....+ .-.++. +.+.++++.+++.+.++++
T Consensus 69 v~~~~~p~~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~vil 124 (204)
T cd01830 69 VLSQPGVRTVIILEGVNDIGASGTDFAAAPVTAEELIAGYRQLIRRAHARGIKVIG 124 (204)
T ss_pred HhcCCCCCEEEEecccccccccccccccCCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 3444579999999998644321100 011233 3455666777766766654
No 33
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=53.05 E-value=30 Score=35.70 Aligned_cols=58 Identities=24% Similarity=0.383 Sum_probs=38.3
Q ss_pred HHHHhHHhhcCCcEEEEecCCCCCCCCCCCccccC----HHhHHHHHHHHHhc--CCCEEEEeCC
Q 010834 251 PIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLS----IKGHAECVKFMRSF--NVPLLLLGGG 309 (499)
Q Consensus 251 ~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS----~~g~~~~~~~l~~~--~~pll~lggG 309 (499)
..|.+++++++||++|+ .|-|++..+.-.-.+|. .+-|-++++.++.+ +.--|++..|
T Consensus 143 ~~i~~Ll~~~~PDIlVi-TGHD~~~K~~~d~~dl~~YrnSkyFVeaVk~aR~y~~~~D~LVIFAG 206 (283)
T TIGR02855 143 EKVLDLIEEVRPDILVI-TGHDAYSKNKGNYMDLNAYRHSKYFVETVREARKYVPSLDQLVIFAG 206 (283)
T ss_pred HHHHHHHHHhCCCEEEE-eCchhhhcCCCChhhhhhhhhhHHHHHHHHHHHhcCCCcccEEEEcc
Confidence 45678899999998765 79999986543333332 34455677777776 3344666666
No 34
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=52.87 E-value=51 Score=31.86 Aligned_cols=59 Identities=24% Similarity=0.385 Sum_probs=45.4
Q ss_pred eeeccCCCCCCChHHHHHHHHHHHHhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhcCCCEEEEe
Q 010834 230 YSLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLG 307 (499)
Q Consensus 230 ~~vNVPL~~G~~D~~y~~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~~~pll~lg 307 (499)
|.||+ +.+..+.-+.|..+++. -|+||+ |-.|-+.|..+.|.+.++.+...+.|+++++
T Consensus 79 Y~V~v--------~~le~i~~~al~rA~~~--aDvIII---------DEIGpMElks~~f~~~ve~vl~~~kpliatl 137 (179)
T COG1618 79 YGVNV--------EGLEEIAIPALRRALEE--ADVIII---------DEIGPMELKSKKFREAVEEVLKSGKPLIATL 137 (179)
T ss_pred EEeeH--------HHHHHHhHHHHHHHhhc--CCEEEE---------ecccchhhccHHHHHHHHHHhcCCCcEEEEE
Confidence 67887 44444655666655543 577776 8899999999999999999988899988764
No 35
>KOG3147 consensus 6-phosphogluconolactonase - like protein [Carbohydrate transport and metabolism]
Probab=52.45 E-value=51 Score=33.60 Aligned_cols=85 Identities=14% Similarity=0.187 Sum_probs=47.0
Q ss_pred cchhccccCCCEEEeecCCCCCCCCC-CCCCccccCCCCCceeeccCCCCCCChHHHHHHHHHHHHhHHhh---cCCcEE
Q 010834 190 GVEEAFYTTDRVMTVSFHKFGDYFPG-TGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIGKVMEV---FRPGAV 265 (499)
Q Consensus 190 GtqeaF~~d~rVltiS~H~~g~ffPg-TG~~~eiG~g~G~g~~vNVPL~~G~~D~~y~~~f~~iv~pv~~~---f~PdlI 265 (499)
+-..+|+-|.|+.-++ |...+|=+. .+.++.+-.-..+-|.+|--|.. +.++=....+..+..++.. =+.|++
T Consensus 70 ~kW~if~~DER~Vp~~-~~dSNyg~~~~~~l~~v~~~~~~i~~id~~L~~--~~~~~a~~ye~~l~~~v~~~s~p~FDL~ 146 (252)
T KOG3147|consen 70 SKWHIFFVDERVVPLD-DPDSNYGLAKRHFLSKVPIPHYNIYPIDESLIA--DAEEAADLYEKELKALVANDSFPVFDLL 146 (252)
T ss_pred cceEEEEEeccccCCC-CCcccHHHHHHhhhhhCCCCcCcEEECChhhcc--CHHHHHHHHHHHHHHHhccCCCcceeEE
Confidence 6778899888887766 333221010 22333333222345778877764 2222223333333333333 246999
Q ss_pred EEecCCCCCCCC
Q 010834 266 VLQCGADSLSGD 277 (499)
Q Consensus 266 VvqaG~Dsl~gD 277 (499)
++-||.|+|.--
T Consensus 147 LLG~GpDGHtaS 158 (252)
T KOG3147|consen 147 LLGMGPDGHTAS 158 (252)
T ss_pred EeccCCCCCeee
Confidence 999999998653
No 36
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=52.03 E-value=46 Score=30.91 Aligned_cols=53 Identities=23% Similarity=0.313 Sum_probs=29.4
Q ss_pred HhHHhhcCCcEEEEecCCCCCCCCCCCc--ccc-C---HHhH----HHHHHHHHhcCCCEEEE
Q 010834 254 GKVMEVFRPGAVVLQCGADSLSGDRLGC--FNL-S---IKGH----AECVKFMRSFNVPLLLL 306 (499)
Q Consensus 254 ~pv~~~f~PdlIVvqaG~Dsl~gDpLG~--~nL-S---~~g~----~~~~~~l~~~~~pll~l 306 (499)
...+...+||+||+..|..=+.....+. ... + .+.| ..+++.++..+.+++++
T Consensus 52 ~~~l~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~~~~~~~~vili 114 (200)
T cd01829 52 KELIAEEKPDVVVVFLGANDRQDIRDGDGYLKFGSPEWEEEYRQRIDELLNVARAKGVPVIWV 114 (200)
T ss_pred HHHHhcCCCCEEEEEecCCCCccccCCCceeecCChhHHHHHHHHHHHHHHHHHhCCCcEEEE
Confidence 3445678999999999985443211110 000 0 1233 34555556567777766
No 37
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=51.52 E-value=43 Score=29.47 Aligned_cols=50 Identities=18% Similarity=0.270 Sum_probs=31.2
Q ss_pred HHHHhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhcCCCEEEEeCCCCC
Q 010834 251 PIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYT 312 (499)
Q Consensus 251 ~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~~~pll~lggGGY~ 312 (499)
..+..+.+.++||+|.++|= ..+.....++++.+|+.+-.+.++.||.+-
T Consensus 29 ~~~~~~~~~~~pdiv~~S~~------------~~~~~~~~~~~~~ik~~~p~~~iv~GG~~~ 78 (127)
T cd02068 29 DIVEDIKELLKPDVVGISLM------------TSAIYEALELAKIAKEVLPNVIVVVGGPHA 78 (127)
T ss_pred HHHHHHHHhcCCCEEEEeec------------cccHHHHHHHHHHHHHHCCCCEEEECCcch
Confidence 44445444499999999841 112234566778888876556666676553
No 38
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=49.05 E-value=15 Score=32.42 Aligned_cols=65 Identities=12% Similarity=0.219 Sum_probs=32.9
Q ss_pred CChHHHHHHHHHHHHhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHH----HHHHHHHhcCCCEEEEeC
Q 010834 240 IDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHA----ECVKFMRSFNVPLLLLGG 308 (499)
Q Consensus 240 ~~D~~y~~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~----~~~~~l~~~~~pll~lgg 308 (499)
.+-..++..+..-+.+ +...+||+|||++|..=.... .....+...+. ++++.++..+ +++++.-
T Consensus 41 ~~~~~~~~~~~~~~~~-~~~~~~d~vvi~~G~ND~~~~--~~~~~~~~~~~~~l~~~i~~~~~~~-~vi~~~~ 109 (179)
T PF13472_consen 41 ATSSDFLARLQRDVLR-FKDPKPDLVVISFGTNDVLNG--DENDTSPEQYEQNLRRIIEQLRPHG-PVILVSP 109 (179)
T ss_dssp -BHHHHHHHHHHHCHH-HCGTTCSEEEEE--HHHHCTC--TTCHHHHHHHHHHHHHHHHHHHTTS-EEEEEE-
T ss_pred ccHhHHHHHHHHHHhh-hccCCCCEEEEEccccccccc--ccccccHHHHHHHHHHHHHhhcccC-cEEEecC
Confidence 3334455555554444 588999999999996333221 12333344443 3444444444 7766643
No 39
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=48.48 E-value=46 Score=30.49 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=29.5
Q ss_pred HhHHhhc---CCcEEEEecCCCCCCCCCCCccccCHHhHH----HHHHHHHh--cCCCEEEE
Q 010834 254 GKVMEVF---RPGAVVLQCGADSLSGDRLGCFNLSIKGHA----ECVKFMRS--FNVPLLLL 306 (499)
Q Consensus 254 ~pv~~~f---~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~----~~~~~l~~--~~~pll~l 306 (499)
...+..+ +||+|||+.|..=..... +.-+.+.+-|. ++++.+++ -+.+++++
T Consensus 53 ~~~~~~~~~~~pd~vii~~G~ND~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ii~~ 113 (199)
T cd01838 53 PKIFLEEKLAQPDLVTIFFGANDAALPG-QPQHVPLDEYKENLRKIVSHLKSLSPKTKVILI 113 (199)
T ss_pred HHhcCccccCCceEEEEEecCccccCCC-CCCcccHHHHHHHHHHHHHHHHhhCCCCeEEEe
Confidence 3444445 899999999976443221 00124444444 45566665 35666666
No 40
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=46.96 E-value=94 Score=26.65 Aligned_cols=67 Identities=13% Similarity=0.243 Sum_probs=34.0
Q ss_pred eeccCCCCCCChHHHHHHHHHHHHhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhcCC--CEEEEeC
Q 010834 231 SLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNV--PLLLLGG 308 (499)
Q Consensus 231 ~vNVPL~~G~~D~~y~~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~~~--pll~lgg 308 (499)
++|+|+.. +..-+..++.. +...+...||+.|+....+ +......+.+.++..+. .-+.++.
T Consensus 42 Ai~ip~~~------~~~~~~~~~~~-~~~~~~~~iv~~C~~~g~r---------s~~a~~~l~~~l~~~G~~~~~v~~l~ 105 (113)
T cd01443 42 SINLPAQS------CYQTLPQVYAL-FSLAGVKLAIFYCGSSQGR---------GPRAARWFADYLRKVGESLPKSYILT 105 (113)
T ss_pred ceecchhH------HHHHHHHHHHH-hhhcCCCEEEEECCCCCcc---------cHHHHHHHHHHHhccCCCCCeEEEEC
Confidence 68999853 21222222322 2234567788888743221 22222233344444442 3466779
Q ss_pred CCCCC
Q 010834 309 GGYTI 313 (499)
Q Consensus 309 GGY~~ 313 (499)
|||+.
T Consensus 106 GG~~~ 110 (113)
T cd01443 106 GGIKA 110 (113)
T ss_pred Chhhh
Confidence 99863
No 41
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=45.83 E-value=46 Score=34.56 Aligned_cols=58 Identities=28% Similarity=0.402 Sum_probs=37.6
Q ss_pred HHHHhHHhhcCCcEEEEecCCCCCCCCCCCccccC----HHhHHHHHHHHHhc--CCCEEEEeCC
Q 010834 251 PIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLS----IKGHAECVKFMRSF--NVPLLLLGGG 309 (499)
Q Consensus 251 ~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS----~~g~~~~~~~l~~~--~~pll~lggG 309 (499)
..|..++++++||++|+ .|-|++..+.-.-.+|. .+-|-++++.++.+ +.--|++..|
T Consensus 144 ~~i~~Ll~~~~PDIlVi-TGHD~~~K~~~d~~dl~~YrnSkyFVeaV~~aR~~ep~~D~LVIfAG 207 (287)
T PF05582_consen 144 EKIYRLLEEYRPDILVI-TGHDGYLKNKKDYSDLNNYRNSKYFVEAVKEARKYEPNLDDLVIFAG 207 (287)
T ss_pred HHHHHHHHHcCCCEEEE-eCchhhhcCCCChhhhhhhhccHHHHHHHHHHHhcCCCcccEEEEcc
Confidence 45678889999998765 79999877652222332 23444677777766 4444666666
No 42
>PRK04531 acetylglutamate kinase; Provisional
Probab=45.60 E-value=30 Score=37.37 Aligned_cols=53 Identities=15% Similarity=0.380 Sum_probs=41.1
Q ss_pred HhHHhhcCC----cEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCc
Q 010834 254 GKVMEVFRP----GAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIR 314 (499)
Q Consensus 254 ~pv~~~f~P----dlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~~~pll~lggGGY~~~ 314 (499)
.+-++.|+- ..+||-.|-..+.. + ...+...+.+|.+.+.++++|.|||..+.
T Consensus 24 ~~~l~~F~~~~~~~~~VIKiGG~~l~~-~-------~~~l~~dla~L~~~G~~~VlVHGggpqI~ 80 (398)
T PRK04531 24 SQYLKRFSQLDAERFAVIKVGGAVLRD-D-------LEALASSLSFLQEVGLTPIVVHGAGPQLD 80 (398)
T ss_pred HHHHHHHhCcCCCcEEEEEEChHHhhc-C-------HHHHHHHHHHHHHCCCcEEEEECCCHHHH
Confidence 344556664 88999999888763 2 36677888889999999999999998765
No 43
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=44.34 E-value=48 Score=30.57 Aligned_cols=48 Identities=17% Similarity=0.399 Sum_probs=30.0
Q ss_pred HhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhc--CCCEEEE
Q 010834 254 GKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSF--NVPLLLL 306 (499)
Q Consensus 254 ~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~--~~pll~l 306 (499)
..++..++|++||+.+|..=...+ .-..+.+..+++.+++. +.|++++
T Consensus 50 ~~~~~~~~pd~vii~~G~ND~~~~-----~~~~~~~~~~i~~i~~~~p~~~iil~ 99 (177)
T cd01844 50 AELLRDVPADLYIIDCGPNIVGAE-----AMVRERLGPLVKGLRETHPDTPILLV 99 (177)
T ss_pred HHHHHhcCCCEEEEEeccCCCccH-----HHHHHHHHHHHHHHHHHCcCCCEEEE
Confidence 345566899999999998743221 12234555677777664 4566654
No 44
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=44.07 E-value=66 Score=28.68 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=25.2
Q ss_pred hHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhc
Q 010834 255 KVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSF 299 (499)
Q Consensus 255 pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~ 299 (499)
..+..++||+||++.|..=+..- ....-..+.+.++++.++..
T Consensus 34 ~~~~~~~pd~vvi~~G~ND~~~~--~~~~~~~~~~~~~i~~i~~~ 76 (157)
T cd01833 34 DWVLAAKPDVVLLHLGTNDLVLN--RDPDTAPDRLRALIDQMRAA 76 (157)
T ss_pred hccccCCCCEEEEeccCcccccC--CCHHHHHHHHHHHHHHHHHh
Confidence 44556899999999997543221 01111234445566666665
No 45
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=41.44 E-value=89 Score=33.01 Aligned_cols=59 Identities=17% Similarity=0.308 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHHhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhc---CCCEEEEeC
Q 010834 242 DESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSF---NVPLLLLGG 308 (499)
Q Consensus 242 D~~y~~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~---~~pll~lgg 308 (499)
-+++..+|..++. ++.+-++|+||++ ||=.=..+.|.+.-....++++.+ ++|++++-|
T Consensus 22 ~~d~~~~f~~~l~-~a~~~~vD~vliA-------GDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~I~G 83 (390)
T COG0420 22 LEDQKKAFDELLE-IAKEEKVDFVLIA-------GDLFDTNNPSPRALKLFLEALRRLKDAGIPVVVIAG 83 (390)
T ss_pred hHHHHHHHHHHHH-HHHHccCCEEEEc-------cccccCCCCCHHHHHHHHHHHHHhccCCCcEEEecC
Confidence 3577888888775 4667789999874 676666778888777777777665 589988754
No 46
>cd00229 SGNH_hydrolase SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=40.66 E-value=86 Score=26.97 Aligned_cols=56 Identities=13% Similarity=0.142 Sum_probs=33.4
Q ss_pred HhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHh--cCCCEEEEeCC
Q 010834 254 GKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRS--FNVPLLLLGGG 309 (499)
Q Consensus 254 ~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~--~~~pll~lggG 309 (499)
...+..++||+||++.|..=....+..........+.++++.++. .+.+++++.--
T Consensus 58 ~~~~~~~~~d~vil~~G~ND~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vv~~~~~ 115 (187)
T cd00229 58 RLALLKDKPDLVIIELGTNDLGRGGDTSIDEFKANLEELLDALRERAPGAKVILITPP 115 (187)
T ss_pred hhhhccCCCCEEEEEecccccccccccCHHHHHHHHHHHHHHHHHHCCCCcEEEEeCC
Confidence 455678999999999996533222111223344455567777764 35666666433
No 47
>PLN02825 amino-acid N-acetyltransferase
Probab=39.01 E-value=59 Score=36.47 Aligned_cols=64 Identities=11% Similarity=0.267 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCchh
Q 010834 245 YHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNV 316 (499)
Q Consensus 245 y~~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~~~pll~lggGGY~~~~v 316 (499)
|...|++. .|-+..|+=..+||-.|-.++..+ . ...+..-+.+|.+.++++++|.|||..+...
T Consensus 1 ~v~~fr~a-~pYI~~~rgktfVIk~gG~~l~~~---~----~~~l~~DialL~~lGi~~VlVHGggpqI~~~ 64 (515)
T PLN02825 1 FVRWFREA-WPYIQGHRGSTFVVVISGEVVAGP---H----LDNILQDISLLHGLGIKFVLVPGTHVQIDKL 64 (515)
T ss_pred ChhHHHhh-hHHHHHHCCCEEEEEECchhhcCc---h----HHHHHHHHHHHHHCCCCEEEEcCCCHHHHHH
Confidence 45567665 477899999999999998888633 1 2345556677888999999999999887533
No 48
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=38.49 E-value=2.1e+02 Score=29.09 Aligned_cols=78 Identities=13% Similarity=0.257 Sum_probs=45.8
Q ss_pred ChHHHHHHHHHHHHhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHh-cCCCEEE--EeCCCCCCchhh
Q 010834 241 DDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRS-FNVPLLL--LGGGGYTIRNVA 317 (499)
Q Consensus 241 ~D~~y~~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~-~~~pll~--lggGGY~~~~vA 317 (499)
+=+++..+.+ .+.+.-+++++++.||+-++..-+.-..||. .+..|++ ++.||++ -..+|+.....+
T Consensus 144 t~~e~~~Ave----~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~------~i~~lk~~~~~pV~~ds~Hs~G~r~~~~~ 213 (260)
T TIGR01361 144 TIEEWLYAAE----YILSSGNGNVILCERGIRTFEKATRNTLDLS------AVPVLKKETHLPIIVDPSHAAGRRDLVIP 213 (260)
T ss_pred CHHHHHHHHH----HHHHcCCCcEEEEECCCCCCCCCCcCCcCHH------HHHHHHHhhCCCEEEcCCCCCCccchHHH
Confidence 3455665554 4445567899999999976632222234442 4555655 5899887 455665543333
Q ss_pred HHHHHHHHHHcCCC
Q 010834 318 RCWCYETGVALGVE 331 (499)
Q Consensus 318 r~w~~~t~~llg~~ 331 (499)
-| .+++++|..
T Consensus 214 ~~---~aAva~Ga~ 224 (260)
T TIGR01361 214 LA---KAAIAAGAD 224 (260)
T ss_pred HH---HHHHHcCCC
Confidence 33 346677754
No 49
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=37.46 E-value=62 Score=35.94 Aligned_cols=58 Identities=16% Similarity=0.222 Sum_probs=40.7
Q ss_pred HHHHHHHhHHhhcCCcEEEEecCC-CCCCCCCCCccccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCch
Q 010834 248 LFKPIIGKVMEVFRPGAVVLQCGA-DSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRN 315 (499)
Q Consensus 248 ~f~~iv~pv~~~f~PdlIVvqaG~-Dsl~gDpLG~~nLS~~g~~~~~~~l~~~~~pll~lggGGY~~~~ 315 (499)
.++..|..+.++|+|++|+|..++ -.+.||.++. +++.+..-++|++.+--.||....
T Consensus 72 ~L~~aI~~~~~~~~P~~I~V~sTC~selIGdDi~~----------~~~~~~~~~~pvi~v~t~gf~g~~ 130 (511)
T TIGR01278 72 RLVDTVRRVDDRFKPDLIVVTPSCTSSLLQEDLGN----------LAAAAGLDKSKVIVADVNAYRRKE 130 (511)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCChHHHhccCHHH----------HHHHhccCCCcEEEecCCCcccch
Confidence 455667778889999998888776 6777776544 233332226899999888888753
No 50
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=36.56 E-value=96 Score=31.71 Aligned_cols=64 Identities=16% Similarity=0.316 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCc
Q 010834 244 SYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIR 314 (499)
Q Consensus 244 ~y~~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~~~pll~lggGGY~~~ 314 (499)
.....|++.. |-+..|+=..+||-+|-+++..+.+ .+.+.+=+.++...+.++++|.|||.-..
T Consensus 6 ~~~~~~~~~~-pyi~~~~~~~~VIk~gG~~~~~~~l------~~~~~~di~~l~~~g~~~VlVHGgg~~i~ 69 (284)
T CHL00202 6 ERVQVLSEAL-PYIQKFRGRIMVIKYGGAAMKNLIL------KADIIKDILFLSCIGLKIVVVHGGGPEIN 69 (284)
T ss_pred HHHHHHHHHH-HHHHHHcCCeEEEEEChHHhcCcch------HHHHHHHHHHHHHCCCcEEEEeCCcHHHH
Confidence 5567787764 6788999899999999877654321 11234445566778999999999998653
No 51
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=35.79 E-value=1.4e+02 Score=29.74 Aligned_cols=52 Identities=17% Similarity=0.270 Sum_probs=34.5
Q ss_pred HHHHHHHhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhcCCCEEEEeC
Q 010834 248 LFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGG 308 (499)
Q Consensus 248 ~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~~~pll~lgg 308 (499)
+++.++. .+++-+||+||+. || +..+....+.+..+++.+..++.|++++-|
T Consensus 19 ~le~l~~-~~~~~~~D~vv~~-------GD-l~~~g~~~~~~~~~l~~l~~l~~pv~~V~G 70 (224)
T cd07388 19 ALEKLVG-LAPETGADAIVLI-------GN-LLPKAAKSEDYAAFFRILGEAHLPTFYVPG 70 (224)
T ss_pred HHHHHHH-HHhhcCCCEEEEC-------CC-CCCCCCCHHHHHHHHHHHHhcCCceEEEcC
Confidence 3444443 4555689987763 55 333444567788888888888899987765
No 52
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=35.37 E-value=57 Score=36.01 Aligned_cols=54 Identities=11% Similarity=0.252 Sum_probs=38.3
Q ss_pred HHHHHHhHHhhcCCcEEEEecCCCC-CCCCCCCccccCHHhHHHHHHHH-HhcCCCEEEEeCCCCC
Q 010834 249 FKPIIGKVMEVFRPGAVVLQCGADS-LSGDRLGCFNLSIKGHAECVKFM-RSFNVPLLLLGGGGYT 312 (499)
Q Consensus 249 f~~iv~pv~~~f~PdlIVvqaG~Ds-l~gDpLG~~nLS~~g~~~~~~~l-~~~~~pll~lggGGY~ 312 (499)
++.+|..++++|+|++|||..++=+ +-|| .+++ +.+.+ ++.++||+.+-..|+.
T Consensus 85 L~~~i~ei~~~~~p~~ifv~~TC~t~iIGd-------Dle~---va~~~~~~~gipVV~v~~~Gf~ 140 (457)
T CHL00073 85 LKRLCLQIKKDRNPSVIVWIGTCTTEIIKM-------DLEG---MAPKLEAEIGIPIVVARANGLD 140 (457)
T ss_pred HHHHHHHHHHhCCCCEEEEEccCcHHhhcc-------CHHH---HHHHHHHhhCCCEEEEeCCCcc
Confidence 4466778899999999999988533 3333 3332 33333 3569999999999997
No 53
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=35.26 E-value=1.2e+02 Score=28.58 Aligned_cols=46 Identities=15% Similarity=0.277 Sum_probs=28.6
Q ss_pred hHHhhcCCcEEEEecCCCCCCCCCCCccccCH----HhHHHHHHHHHhcCCCEEEE
Q 010834 255 KVMEVFRPGAVVLQCGADSLSGDRLGCFNLSI----KGHAECVKFMRSFNVPLLLL 306 (499)
Q Consensus 255 pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~----~g~~~~~~~l~~~~~pll~l 306 (499)
..+..++||+||++.|..=. .. .++. +.+.++++.++..+..++++
T Consensus 65 ~~l~~~~pd~Vii~~GtND~----~~--~~~~~~~~~~l~~li~~~~~~~~~~ill 114 (191)
T PRK10528 65 ALLKQHQPRWVLVELGGNDG----LR--GFPPQQTEQTLRQIIQDVKAANAQPLLM 114 (191)
T ss_pred HHHHhcCCCEEEEEeccCcC----cc--CCCHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 34456799999999997543 22 2444 34455666666666555444
No 54
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=34.94 E-value=1e+02 Score=34.41 Aligned_cols=59 Identities=17% Similarity=0.166 Sum_probs=40.4
Q ss_pred HHHHHHHhHHhhcCCcEEEEecCCCC-CCCCCCCccccCHHhHHHHHHHHH-hcCCCEEEEeCCCCCCchh
Q 010834 248 LFKPIIGKVMEVFRPGAVVLQCGADS-LSGDRLGCFNLSIKGHAECVKFMR-SFNVPLLLLGGGGYTIRNV 316 (499)
Q Consensus 248 ~f~~iv~pv~~~f~PdlIVvqaG~Ds-l~gDpLG~~nLS~~g~~~~~~~l~-~~~~pll~lggGGY~~~~v 316 (499)
.+...|..+.++|+|++|+|..++=+ +.||-++ .+++.++ ..+.|++.+--.||.....
T Consensus 72 kL~~~I~~~~~~~~P~~I~V~tTC~~eiIGDDi~----------~v~~~~~~~~~~pVi~v~t~~f~g~~~ 132 (513)
T CHL00076 72 KVVDNITRKDKEERPDLIVLTPTCTSSILQEDLQ----------NFVDRASIESDSDVILADVNHYRVNEL 132 (513)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCchhhhhcCHH----------HHHHHhhcccCCCEEEeCCCCCcccHH
Confidence 44455667889999999999877543 3444322 2444443 3588999999999987554
No 55
>PLN02512 acetylglutamate kinase
Probab=33.62 E-value=1.1e+02 Score=31.82 Aligned_cols=64 Identities=20% Similarity=0.297 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhcCCCEEEEeCCCCCC
Q 010834 243 ESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTI 313 (499)
Q Consensus 243 ~~y~~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~~~pll~lggGGY~~ 313 (499)
-.|...|++. .|-+..|+=..+|+-.|-.++.... + .+.+.+-+..++..+.++++|.|||...
T Consensus 29 ~~~~~~~r~~-~pyi~~~~~~tiVIKlGGs~i~d~~-----~-~~~~~~di~~l~~~g~~iVlVHGgG~~i 92 (309)
T PLN02512 29 LSRVDILSEA-LPFIQRFRGKTVVVKYGGAAMKDPE-----L-KAGVIRDLVLLSCVGLRPVLVHGGGPEI 92 (309)
T ss_pred HHHHHHHHHH-hHHHHHHCCCeEEEEECCeeccChh-----H-HHHHHHHHHHHHHCCCCEEEEECCcHHH
Confidence 3788889886 4778999999999999977764432 1 1122233335677788999999998854
No 56
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=33.19 E-value=1.8e+02 Score=31.13 Aligned_cols=29 Identities=28% Similarity=0.463 Sum_probs=18.4
Q ss_pred chHHHHHHHHHhcC--CcEEEEEccccCCccchh
Q 010834 162 NDIVLAILELLKQH--ERVLYVDIDIHHGDGVEE 193 (499)
Q Consensus 162 NdiaiAi~~Llk~~--~RVl~IDiDvHHGDGtqe 193 (499)
.||.-+...+.+.. .||+ +|.=||||-.+
T Consensus 239 ~di~~~~~~l~~~~lp~~vm---VD~SH~ns~k~ 269 (344)
T TIGR00034 239 ADVAAAKKQLEKAGLPPHLM---IDFSHGNSNKD 269 (344)
T ss_pred HHHHHHHHHHHHcCCCCeEE---EeCCCcccccc
Confidence 57766665555543 4455 47789998754
No 57
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=32.75 E-value=1.2e+02 Score=28.31 Aligned_cols=45 Identities=11% Similarity=0.096 Sum_probs=26.3
Q ss_pred CCcEEEEecCCCCCCCCCCCccccCHHhHH----HHHHHHHhcCCCEEEE
Q 010834 261 RPGAVVLQCGADSLSGDRLGCFNLSIKGHA----ECVKFMRSFNVPLLLL 306 (499)
Q Consensus 261 ~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~----~~~~~l~~~~~pll~l 306 (499)
+||+|||+.|..=..... .....+.+.|. ++++.+++.+.+++++
T Consensus 65 ~pdlVii~~G~ND~~~~~-~~~~~~~~~~~~nl~~ii~~~~~~~~~~il~ 113 (198)
T cd01821 65 PGDYVLIQFGHNDQKPKD-PEYTEPYTTYKEYLRRYIAEARAKGATPILV 113 (198)
T ss_pred CCCEEEEECCCCCCCCCC-CCCCCcHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 799999999965433211 00123444444 4566667667665554
No 58
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=32.49 E-value=1.6e+02 Score=26.26 Aligned_cols=43 Identities=23% Similarity=0.264 Sum_probs=32.4
Q ss_pred HHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhcCCCEEEEeCCCCCC
Q 010834 256 VMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTI 313 (499)
Q Consensus 256 v~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~~~pll~lggGGY~~ 313 (499)
.+...++|.||+.+| |+ +|...++.+++.+.++++++-.+...
T Consensus 94 ~~~~~~~d~ivLvSg-D~--------------Df~~~i~~lr~~G~~V~v~~~~~~~s 136 (149)
T cd06167 94 LAYKRRIDTIVLVSG-DS--------------DFVPLVERLRELGKRVIVVGFEAKTS 136 (149)
T ss_pred HhhhcCCCEEEEEEC-Cc--------------cHHHHHHHHHHcCCEEEEEccCccCh
Confidence 344448999999998 44 46678899999999999887664443
No 59
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=32.46 E-value=14 Score=37.36 Aligned_cols=54 Identities=11% Similarity=0.284 Sum_probs=33.0
Q ss_pred HHhHHhhcCCcEEEEecCCC---CCCCCCCCccccCHHhHHHHHHHHHhcCCCEEEE
Q 010834 253 IGKVMEVFRPGAVVLQCGAD---SLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLL 306 (499)
Q Consensus 253 v~pv~~~f~PdlIVvqaG~D---sl~gDpLG~~nLS~~g~~~~~~~l~~~~~pll~l 306 (499)
+..+++.++||+||..+|.- ....+|...+.+...+-..+.+.++..+.+++.+
T Consensus 43 ~~~~~~~~~pd~Vin~aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~ 99 (286)
T PF04321_consen 43 VAKLLEAFKPDVVINCAAYTNVDACEKNPEEAYAINVDATKNLAEACKERGARLIHI 99 (286)
T ss_dssp HHHHHHHH--SEEEE------HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEE
T ss_pred HHHHHHHhCCCeEeccceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEe
Confidence 44566788999999999863 3334565566666677777888888888888754
No 60
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=32.38 E-value=1.8e+02 Score=31.19 Aligned_cols=31 Identities=19% Similarity=0.287 Sum_probs=21.9
Q ss_pred eechHHHHHHHHHhcC--CcEEEEEccccCCccchh
Q 010834 160 YVNDIVLAILELLKQH--ERVLYVDIDIHHGDGVEE 193 (499)
Q Consensus 160 y~NdiaiAi~~Llk~~--~RVl~IDiDvHHGDGtqe 193 (499)
.-+++..++..+.+.. .+|+ +|.=|||+-.+
T Consensus 244 ~~~~i~~a~~~l~k~~l~~~vm---VD~SH~Ns~K~ 276 (353)
T PRK12755 244 DAASVAACEAQLEKAGLRPRLM---IDCSHANSGKD 276 (353)
T ss_pred CHHHHHHHHHHHHHcCCCCcEE---ecCCccccccc
Confidence 3477888877777654 5655 58899998764
No 61
>COG2755 TesA Lysophospholipase L1 and related esterases [Amino acid transport and metabolism]
Probab=32.16 E-value=3.7e+02 Score=25.21 Aligned_cols=92 Identities=14% Similarity=0.137 Sum_probs=47.8
Q ss_pred HhHHhhcC-CcEEEEecCCCCCCCCCCCcc----ccCHHhHHHHHHHHHhcCCC-----EEEEeCCCCCC------chhh
Q 010834 254 GKVMEVFR-PGAVVLQCGADSLSGDRLGCF----NLSIKGHAECVKFMRSFNVP-----LLLLGGGGYTI------RNVA 317 (499)
Q Consensus 254 ~pv~~~f~-PdlIVvqaG~Dsl~gDpLG~~----nLS~~g~~~~~~~l~~~~~p-----ll~lggGGY~~------~~vA 317 (499)
..++.... ||+|+++.|..=.. |...+ ......+.++++.+++.+.+ +-++..+-+++ ....
T Consensus 69 ~~~l~~~~~~d~v~i~lG~ND~~--~~~~~~p~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 146 (216)
T COG2755 69 PALLKQHLPPDLVIIMLGGNDIG--PLRGFSPNAAEFTKNLRQLIQALRKANPLAGLTPIPVLLVGIAPPFIATDFPTYG 146 (216)
T ss_pred HHHHhccCCCCEEEEEeeccccc--hhcccCccHHHHHHHHHHHHHHHHHhcccccccccceeEEEecCCccccchhHHH
Confidence 34444444 99999999986654 22221 22223334567777776522 22223333443 4445
Q ss_pred HHHHHHHHHHcCCCCC-CCCCcchhhhccCC
Q 010834 318 RCWCYETGVALGVEVD-DKMPQHEYYEYFGP 347 (499)
Q Consensus 318 r~w~~~t~~llg~~~~-~~~P~~~y~~~~~p 347 (499)
+-|..-..-.+..-.. ..+|..++|..+.+
T Consensus 147 ~~~~~~~~~~~~~la~~~~v~~~d~~~~~~~ 177 (216)
T COG2755 147 ADWFHAANEILAQLANELFVPLADLFDAGVD 177 (216)
T ss_pred HHHHHHHHHHHHHhhhhcCccchHHHhcccc
Confidence 5555544444433223 45677777765553
No 62
>PRK13236 nitrogenase reductase; Reviewed
Probab=31.62 E-value=49 Score=33.85 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=17.6
Q ss_pred hcCCcEEEEEccccCCccchhccc
Q 010834 173 KQHERVLYVDIDIHHGDGVEEAFY 196 (499)
Q Consensus 173 k~~~RVl~IDiDvHHGDGtqeaF~ 196 (499)
+..+|||+||.|.++++ +.-+|.
T Consensus 32 ~~G~rVLliD~D~q~~~-~~~l~~ 54 (296)
T PRK13236 32 EMGQRILIVGCDPKADS-TRLMLH 54 (296)
T ss_pred HCCCcEEEEEccCCCCc-cchhcc
Confidence 45689999999999877 444443
No 63
>cd02651 nuc_hydro_IU_UC_XIUA nuc_hydro_IU_UC_XIUA: inosine-uridine preferring, xanthosine-inosine-uridine-adenosine-preferring and, uridine-cytidine preferring nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains proteins similar to nucleoside hydrolases which hydrolyze both pyrimidine and purine ribonucleosides: the inosine-uridine preferring nucleoside hydrolase from Crithidia fasciculata, the inosine-uridine-xanthosine preferring nucleoside hydrolase RihC from Escherichia coli and the xanthosine-inosine-uridine-adenosine-preferring nucleoside hydrolase RihC from Salmonella enterica serovar Typhimurium. This group also contains proteins similar to the pyrimidine-specific uridine-cytidine preferring nucleoside hydrolases URH1 from Saccharomyces cerevisiae, E. coli RihA and E. coli RihB. E. coli RihA is equally efficient with uridine a
Probab=31.56 E-value=75 Score=32.60 Aligned_cols=52 Identities=17% Similarity=0.211 Sum_probs=33.0
Q ss_pred HHhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCchh
Q 010834 253 IGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNV 316 (499)
Q Consensus 253 v~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~~~pll~lggGGY~~~~v 316 (499)
|...++++..++.||+.| ||..+-+-..-+.++.+. ++=|+++||++..-|+
T Consensus 105 i~~~~~~~~~evtiva~G-------PLTNlA~al~~~P~~~~~-----ik~iviMGG~~~~GN~ 156 (302)
T cd02651 105 IIDTLRASPEPITLVATG-------PLTNIALLLRKYPELAER-----IKEIVLMGGALGRGNI 156 (302)
T ss_pred HHHHHHhCCCCEEEEEcC-------chHHHHHHHHHChhhHhh-----cCEEEEecCCcCCCCC
Confidence 345567788899999999 887765543333333333 3447777887754444
No 64
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=30.92 E-value=1.1e+02 Score=33.44 Aligned_cols=66 Identities=15% Similarity=0.278 Sum_probs=42.0
Q ss_pred HHHHHHHhHHhhcCCcEEEEecCC-CCCCCCCCCccccCHHhHHHHHHHHHh-c----CCCEEEEeCCCCCCchhhHHHH
Q 010834 248 LFKPIIGKVMEVFRPGAVVLQCGA-DSLSGDRLGCFNLSIKGHAECVKFMRS-F----NVPLLLLGGGGYTIRNVARCWC 321 (499)
Q Consensus 248 ~f~~iv~pv~~~f~PdlIVvqaG~-Dsl~gDpLG~~nLS~~g~~~~~~~l~~-~----~~pll~lggGGY~~~~vAr~w~ 321 (499)
-++..|..+.+.|+|++|+|..++ -...||-+ ..+++.++. . ++|++.+--.||.- +....|.
T Consensus 79 ~L~~aI~~~~~~~~P~~I~V~ttC~~eiIGDDi----------~~v~~~~~~~~p~~~~~pvi~v~tpgF~g-~~~~G~~ 147 (455)
T PRK14476 79 NVEEAILNICKKAKPKIIGLCTTGLTETRGDDV----------AGALKEIRARHPELADTPIVYVSTPDFKG-ALEDGWA 147 (455)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCcchHhhhhccH----------HHHHHHHHhhccccCCCeEEEecCCCCCC-cHHHHHH
Confidence 344556677788999998776554 67777742 224443432 2 68999999999976 3444444
Q ss_pred HHH
Q 010834 322 YET 324 (499)
Q Consensus 322 ~~t 324 (499)
...
T Consensus 148 ~a~ 150 (455)
T PRK14476 148 AAV 150 (455)
T ss_pred HHH
Confidence 433
No 65
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=30.75 E-value=1.8e+02 Score=31.58 Aligned_cols=48 Identities=15% Similarity=0.139 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHh
Q 010834 243 ESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRS 298 (499)
Q Consensus 243 ~~y~~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~ 298 (499)
.+...+|++++.- +.+.+||+||++ ||=.-.-+-|.+...++.+.|++
T Consensus 25 ~D~~~~f~eil~~-a~~~~vD~VLia-------GDLFd~~~Ps~~~~~~~~~~lr~ 72 (405)
T TIGR00583 25 DDSWNTFEEVLQI-AKEQDVDMILLG-------GDLFHENKPSRKSLYQVLRSLRL 72 (405)
T ss_pred hhHHHHHHHHHHH-HHHcCCCEEEEC-------CccCCCCCCCHHHHHHHHHHHHH
Confidence 4667789887765 567899999873 55444445567777777777764
No 66
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=30.71 E-value=1.6e+02 Score=31.99 Aligned_cols=63 Identities=11% Similarity=0.210 Sum_probs=40.9
Q ss_pred HHHHHHHhHHhhcCCcEEEEecCC-CCCCCCCCCccccCHHhHHHHHHHHHh-----cCCCEEEEeCCCCCCchhhHHHH
Q 010834 248 LFKPIIGKVMEVFRPGAVVLQCGA-DSLSGDRLGCFNLSIKGHAECVKFMRS-----FNVPLLLLGGGGYTIRNVARCWC 321 (499)
Q Consensus 248 ~f~~iv~pv~~~f~PdlIVvqaG~-Dsl~gDpLG~~nLS~~g~~~~~~~l~~-----~~~pll~lggGGY~~~~vAr~w~ 321 (499)
-++..|..+.+.|+|++|+|...+ ....||-+. .+++.++. .++|++.+--.||.-. ....|.
T Consensus 78 ~L~~~I~~~~~~~~P~~I~V~ttC~~eiIGDDi~----------~v~~~~~~e~p~~~~~pvi~v~tpgf~g~-~~~G~~ 146 (432)
T TIGR01285 78 HIEEAIDTLCQRNKPKAIGLLSTGLTETRGEDIA----------RVVRQFREKHPQHKGTAVVTVNTPDFKGS-LEDGYA 146 (432)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcccccccCHH----------HHHHHHHhhcccccCCeEEEecCCCcCCc-hHHHHH
Confidence 344556677889999988776554 446676433 24444433 3789999999999863 344444
No 67
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=29.46 E-value=3.1e+02 Score=29.37 Aligned_cols=124 Identities=14% Similarity=0.228 Sum_probs=69.3
Q ss_pred CCCC--ChHHHHHHHHHHHHhHHhhcCCcEEEEecCCCCCC-CCCCCccccCHHhHHHHHHHHHhc-CCCEEE--EeCCC
Q 010834 237 DDGI--DDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLS-GDRLGCFNLSIKGHAECVKFMRSF-NVPLLL--LGGGG 310 (499)
Q Consensus 237 ~~G~--~D~~y~~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~-gDpLG~~nLS~~g~~~~~~~l~~~-~~pll~--lggGG 310 (499)
+.|+ +-++++.+.+. +...-++++|++.||+=++. +-|.-.++|. .+..|++. +.|+++ ....|
T Consensus 214 k~G~~~t~ee~~~A~e~----i~~~Gn~~viL~erG~rtf~s~y~~~~~dl~------ai~~lk~~~~lPVi~DpsH~~G 283 (352)
T PRK13396 214 KRGMAATIDEWLMAAEY----ILAAGNPNVILCERGIRTFDRQYTRNTLDLS------VIPVLRSLTHLPIMIDPSHGTG 283 (352)
T ss_pred eCCCCCCHHHHHHHHHH----HHHcCCCeEEEEecCCccCcCCCCCCCcCHH------HHHHHHHhhCCCEEECCcccCC
Confidence 4444 45667766654 44556789999999995443 2233345553 55556654 889864 34457
Q ss_pred CCCchhhHHHHHHHHHHcCCC--CCCCCCcchhhhccCCCcccccCCCCCCCcCcHHHHHHHHHHHHHHhccCCCCC
Q 010834 311 YTIRNVARCWCYETGVALGVE--VDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAP 385 (499)
Q Consensus 311 Y~~~~vAr~w~~~t~~llg~~--~~~~~P~~~y~~~~~p~~~l~~~~~~~~~~n~~~~le~i~~~~~~~l~~l~~~p 385 (499)
|..-..+ ...+++++|.. +-+. ++-|+-.+ +.-+..=+++.++++.+.+..-...+...|
T Consensus 284 ~sd~~~~---~a~AAva~GAdGliIE~--------H~~pd~Al----sD~~qsl~p~~~~~l~~~i~~i~~~~g~~~ 345 (352)
T PRK13396 284 KSEYVPS---MAMAAIAAGTDSLMIEV--------HPNPAKAL----SDGPQSLTPDRFDRLMQELAVIGKTVGRWP 345 (352)
T ss_pred cHHHHHH---HHHHHHhhCCCeEEEEe--------cCCcccCC----ChhhhcCCHHHHHHHHHHHHHHHHHhCCCC
Confidence 7754333 34456667754 2111 11122211 122333456788888877777766665544
No 68
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=28.34 E-value=1.1e+02 Score=32.98 Aligned_cols=58 Identities=17% Similarity=0.346 Sum_probs=38.8
Q ss_pred HHHHHHhHHhhcCCcEEEEec-CCCCCCCCCCCccccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCchh
Q 010834 249 FKPIIGKVMEVFRPGAVVLQC-GADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNV 316 (499)
Q Consensus 249 f~~iv~pv~~~f~PdlIVvqa-G~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~~~pll~lggGGY~~~~v 316 (499)
++..|..+.++|+|++|+|.. ......||.+ ..+++.++..+.|++.+--.||.....
T Consensus 74 L~~~I~~~~~~~~p~~I~V~ttC~~~~IGdDi----------~~v~~~~~~~~~~vi~v~t~gf~g~~~ 132 (427)
T cd01971 74 LRELIKSTLSIIDADLFVVLTGCIAEIIGDDV----------GAVVSEFQEGGAPIVYLETGGFKGNNY 132 (427)
T ss_pred HHHHHHHHHHhCCCCEEEEEcCCcHHHhhcCH----------HHHHHHhhhcCCCEEEEECCCcCcccc
Confidence 445566778889999776654 4455666642 234444466689999998889987543
No 69
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=28.26 E-value=1.4e+02 Score=25.77 Aligned_cols=47 Identities=15% Similarity=0.113 Sum_probs=27.9
Q ss_pred hHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhcCC--CEEEEeCCCCC
Q 010834 255 KVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNV--PLLLLGGGGYT 312 (499)
Q Consensus 255 pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~~~--pll~lggGGY~ 312 (499)
..+.+.+||+|++++-... +.....++++.+++.+. ..+++||...+
T Consensus 44 ~~~~~~~pdvV~iS~~~~~-----------~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~ 92 (119)
T cd02067 44 EAAKEEDADAIGLSGLLTT-----------HMTLMKEVIEELKEAGLDDIPVLVGGAIVT 92 (119)
T ss_pred HHHHHcCCCEEEEeccccc-----------cHHHHHHHHHHHHHcCCCCCeEEEECCCCC
Confidence 4567889999999775222 22333567777777643 34455444433
No 70
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=27.41 E-value=2.2e+02 Score=28.47 Aligned_cols=54 Identities=13% Similarity=0.177 Sum_probs=35.5
Q ss_pred HHHHHHHHHhHHhh-cCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhcCCCEEEEeC
Q 010834 246 HYLFKPIIGKVMEV-FRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGG 308 (499)
Q Consensus 246 ~~~f~~iv~pv~~~-f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~~~pll~lgg 308 (499)
...|+.+|..+... -+||+||+. ||=.- +-+.+.|..+.+.++.++.|+.++.|
T Consensus 39 ~~~l~~~i~~i~~~~~~~D~vvit-------GDl~~--~~~~~~~~~~~~~l~~l~~Pv~~v~G 93 (275)
T PRK11148 39 WESYQAVLEAIRAQQHEFDLIVAT-------GDLAQ--DHSSEAYQHFAEGIAPLRKPCVWLPG 93 (275)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEC-------CCCCC--CCCHHHHHHHHHHHhhcCCcEEEeCC
Confidence 44566666665443 579987763 34211 12467788888889999999887765
No 71
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=26.74 E-value=2.3e+02 Score=27.18 Aligned_cols=56 Identities=18% Similarity=0.301 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhHHhh-cCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhcCCCEEEEeC
Q 010834 244 SYHYLFKPIIGKVMEV-FRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGG 308 (499)
Q Consensus 244 ~y~~~f~~iv~pv~~~-f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~~~pll~lgg 308 (499)
.....|+.++..+.+. -+||+||+. ||-... -+.+.|..+.+.++.+++|++++.|
T Consensus 22 ~~~~~l~~~~~~i~~~~~~~d~vi~~-------GDl~~~--~~~~~~~~~~~~l~~~~~p~~~v~G 78 (240)
T cd07402 22 DTAASLEAVLAHINALHPRPDLVLVT-------GDLTDD--GSPESYERLRELLAALPIPVYLLPG 78 (240)
T ss_pred CHHHHHHHHHHHHHhcCCCCCEEEEC-------ccCCCC--CCHHHHHHHHHHHhhcCCCEEEeCC
Confidence 4556677767654443 389977653 342211 1345677777888888999887755
No 72
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=26.67 E-value=3.5e+02 Score=27.67 Aligned_cols=77 Identities=14% Similarity=0.225 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHh-cCCCEEE--EeCCCCCCchhhH
Q 010834 242 DESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRS-FNVPLLL--LGGGGYTIRNVAR 318 (499)
Q Consensus 242 D~~y~~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~-~~~pll~--lggGGY~~~~vAr 318 (499)
=++++.+. ..+...-+++++++.||.=+..+-|.-..+| ..+..+++ ++.||++ -.+-|+..-..+-
T Consensus 147 ~~e~~~A~----e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl------~~i~~lk~~~~~pV~~D~sHs~G~~~~v~~~ 216 (266)
T PRK13398 147 LEEWLYAA----EYIMSEGNENVVLCERGIRTFETYTRNTLDL------AAVAVIKELSHLPIIVDPSHATGRRELVIPM 216 (266)
T ss_pred HHHHHHHH----HHHHhcCCCeEEEEECCCCCCCCCCHHHHHH------HHHHHHHhccCCCEEEeCCCcccchhhHHHH
Confidence 34555554 3444566899999999975454433223333 24556655 4889776 3344443322222
Q ss_pred HHHHHHHHHcCCC
Q 010834 319 CWCYETGVALGVE 331 (499)
Q Consensus 319 ~w~~~t~~llg~~ 331 (499)
..+++++|..
T Consensus 217 ---~~aAva~Ga~ 226 (266)
T PRK13398 217 ---AKAAIAAGAD 226 (266)
T ss_pred ---HHHHHHcCCC
Confidence 3456677753
No 73
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=26.41 E-value=1.3e+02 Score=30.58 Aligned_cols=95 Identities=23% Similarity=0.306 Sum_probs=48.1
Q ss_pred HHHHHhcCCcEEEEEccccCCccchhccccCCCEEEeecCCCCCCCCCCCCCccccCCCCCceeeccCCCCCCChHHHHH
Q 010834 168 ILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHY 247 (499)
Q Consensus 168 i~~Llk~~~RVl~IDiDvHHGDGtqeaF~~d~rVltiS~H~~g~ffPgTG~~~eiG~g~G~g~~vNVPL~~G~~D~~y~~ 247 (499)
+.-+....+||++||.|+=-|| +...|--.+.-.+ +|.+ -=+.-.+.|+=.... ...+.+ ||.+.+-+++..
T Consensus 25 a~~~~~~~k~V~~iDaD~g~~n-L~~~~g~~~~~~~--l~dv---L~~~~~~~Di~~~~~-~~gl~v-ipg~~~~~~~~~ 96 (262)
T COG0455 25 AALAALGGKVVLLIDADLGLGN-LSLLLGVESKPTT--LHDV---LAGEASIEDIIYETP-QDGLYV-LPGGSGLEDLAK 96 (262)
T ss_pred HHHHhhCCCeEEEEecCCCCCc-HHHHhCCCCCccc--HHHH---HhCCCCHhHeeeecC-cCCEEE-eeCCCChHHHhh
Confidence 3344455688899999997766 2222333332222 3333 111122222211111 011222 466777677754
Q ss_pred HH----HHHHHhHHhhcCCcEEEEecCCC
Q 010834 248 LF----KPIIGKVMEVFRPGAVVLQCGAD 272 (499)
Q Consensus 248 ~f----~~iv~pv~~~f~PdlIVvqaG~D 272 (499)
+. +.++..+.+.+ |+||+-||.-
T Consensus 97 ~~~~~~~~~~~~l~~~~--D~iliD~~aG 123 (262)
T COG0455 97 LDPEDLEDVIKELEELY--DYILIDTGAG 123 (262)
T ss_pred cCHHHHHHHHHHHHhcC--CEEEEeCCCC
Confidence 44 34555554445 9999999953
No 74
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=26.16 E-value=45 Score=28.12 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=42.1
Q ss_pred ecCCCCCCCCCCCc-cccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCchhhHHH
Q 010834 268 QCGADSLSGDRLGC-FNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCW 320 (499)
Q Consensus 268 qaG~Dsl~gDpLG~-~nLS~~g~~~~~~~l~~~~~pll~lggGGY~~~~vAr~w 320 (499)
.++-+.++|+.|+. +.+|-....++++.|+..|.+|..+.+=||.+......+
T Consensus 14 ~~~~~~~SGe~La~~LgiSRtaVwK~Iq~Lr~~G~~I~s~~~kGY~L~~~~~ll 67 (79)
T COG1654 14 LLTGNFVSGEKLAEELGISRTAVWKHIQQLREEGVDIESVRGKGYLLPQLPDLL 67 (79)
T ss_pred HcCCCcccHHHHHHHHCccHHHHHHHHHHHHHhCCceEecCCCceeccCccccC
Confidence 34555677777774 788999999999999999999999988899986555433
No 75
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=26.01 E-value=9.4e+02 Score=27.99 Aligned_cols=17 Identities=29% Similarity=0.755 Sum_probs=14.3
Q ss_pred hcCCcEEEEEccccCCc
Q 010834 173 KQHERVLYVDIDIHHGD 189 (499)
Q Consensus 173 k~~~RVl~IDiDvHHGD 189 (499)
...+|||+||.|.+.+.
T Consensus 558 ~~G~rVLlID~D~r~~~ 574 (726)
T PRK09841 558 QSDQKVLFIDADLRRGY 574 (726)
T ss_pred hCCCeEEEEeCCCCCCc
Confidence 45689999999999875
No 76
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=25.94 E-value=1.3e+02 Score=32.37 Aligned_cols=57 Identities=21% Similarity=0.215 Sum_probs=38.9
Q ss_pred HHHHHHHhHHhhcCCcEEEEecC-CCCCCCCCCCccccCHHhHHHHHHHHH-hcCCCEEEEeCCCCCCc
Q 010834 248 LFKPIIGKVMEVFRPGAVVLQCG-ADSLSGDRLGCFNLSIKGHAECVKFMR-SFNVPLLLLGGGGYTIR 314 (499)
Q Consensus 248 ~f~~iv~pv~~~f~PdlIVvqaG-~Dsl~gDpLG~~nLS~~g~~~~~~~l~-~~~~pll~lggGGY~~~ 314 (499)
-++..|..+.++|+|++|+|... ...+.||.+. .+++.++ ..+.|++.+--.||...
T Consensus 72 kL~~~I~~~~~~~~p~~I~v~~tC~~~iIGdDi~----------~v~~~~~~~~~~~vi~v~t~gf~g~ 130 (430)
T cd01981 72 KVVENITRKDKEEKPDLIVLTPTCTSSILQEDLQ----------NFVRAAGLSSKSPVLPLDVNHYRVN 130 (430)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccHHHHhhCHH----------HHHHHhhhccCCCeEEecCCCccch
Confidence 34455667788899998877766 5666676532 2333343 45889999988889864
No 77
>CHL00175 minD septum-site determining protein; Validated
Probab=25.22 E-value=75 Score=31.75 Aligned_cols=20 Identities=25% Similarity=0.152 Sum_probs=16.0
Q ss_pred HhcCCcEEEEEccccCCccc
Q 010834 172 LKQHERVLYVDIDIHHGDGV 191 (499)
Q Consensus 172 lk~~~RVl~IDiDvHHGDGt 191 (499)
.+...||++||.|.+.||-.
T Consensus 41 a~~g~~vlliD~D~~~~~l~ 60 (281)
T CHL00175 41 ARLGYRVALIDADIGLRNLD 60 (281)
T ss_pred HhCCCeEEEEeCCCCCCChh
Confidence 34568999999999988744
No 78
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=25.18 E-value=1.4e+02 Score=28.71 Aligned_cols=37 Identities=5% Similarity=0.003 Sum_probs=27.0
Q ss_pred HhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhcCC
Q 010834 254 GKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNV 301 (499)
Q Consensus 254 ~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~~~ 301 (499)
...+++.+||+|.+|+-... +.....+.++.+++.+.
T Consensus 128 v~~~~~~~pd~v~lS~~~~~-----------~~~~~~~~i~~l~~~~~ 164 (197)
T TIGR02370 128 VEKVKKEKPLMLTGSALMTT-----------TMYGQKDINDKLKEEGY 164 (197)
T ss_pred HHHHHHcCCCEEEEcccccc-----------CHHHHHHHHHHHHHcCC
Confidence 35678899999999985333 34456778888888744
No 79
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=24.64 E-value=1.8e+02 Score=27.27 Aligned_cols=36 Identities=28% Similarity=0.281 Sum_probs=22.6
Q ss_pred hcCCcEEEEecCC-CCCCCCCCCccccCHHhH----HHHHHHHHhc
Q 010834 259 VFRPGAVVLQCGA-DSLSGDRLGCFNLSIKGH----AECVKFMRSF 299 (499)
Q Consensus 259 ~f~PdlIVvqaG~-Dsl~gDpLG~~nLS~~g~----~~~~~~l~~~ 299 (499)
..+||+|||..|. |... .++.+..-| .++++.+++.
T Consensus 77 ~~~pd~vii~lGtND~~~-----~~~~~~~~~~~~l~~lv~~i~~~ 117 (208)
T cd01839 77 HSPLDLVIIMLGTNDLKS-----YFNLSAAEIAQGLGALVDIIRTA 117 (208)
T ss_pred CCCCCEEEEecccccccc-----ccCCCHHHHHHHHHHHHHHHHhc
Confidence 3799999999997 4432 233444444 4556666654
No 80
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=24.46 E-value=2.4e+02 Score=23.95 Aligned_cols=56 Identities=25% Similarity=0.411 Sum_probs=32.6
Q ss_pred cCCCCCCChHHHHHHHHHHHHhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhcCCCEEEEeC
Q 010834 234 VPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGG 308 (499)
Q Consensus 234 VPL~~G~~D~~y~~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~~~pll~lgg 308 (499)
|=+|+|++|.- +.+++.+ | ...+|||..-. .++...-.+.++++++.++|++-+.|
T Consensus 6 iD~PPGTgD~~-l~~~~~~--~-----~~g~ivVTTPq-----------~la~~dv~r~~~~~~~~~vpilGvVE 61 (81)
T PF10609_consen 6 IDLPPGTGDEH-LTLMQYL--P-----IDGAIVVTTPQ-----------ELALADVRRAIDMFRKLNVPILGVVE 61 (81)
T ss_dssp EE--SCSSSHH-HHHHHHH---------SEEEEEE-CC-----------C--HHHHHHHHHHHHCTT-EEEEEEE
T ss_pred EeCCCCCCcHH-HHHHHhC--C-----CCeEEEEeCCH-----------HHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 44789999864 3344321 1 22477777652 35666677889999999999997654
No 81
>cd05781 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of Sulfurisphaera ohwakuensis DNA polymerase B3 and similar archaeal family-B DNA polymerases. The 3'-5' exonuclease domain of archaeal proteins with similarity to Sulfurisphaera ohwakuensis DNA polymerase B3. B3 is a family-B DNA polymerase. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. B3 exhibits both polymerase and 3'-5' exonuclease activities. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family B polymerases also contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Archaeal proteins that are involved in DNA replicatio
Probab=24.31 E-value=2.3e+02 Score=27.13 Aligned_cols=88 Identities=23% Similarity=0.322 Sum_probs=53.0
Q ss_pred cEEEEEccccCCccchhccccCCCEEEeecCCCCCCCCCCCCCccccCCCCCceeeccCCCCCCChHHHHHHHHHHHHhH
Q 010834 177 RVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIGKV 256 (499)
Q Consensus 177 RVl~IDiDvHHGDGtqeaF~~d~rVltiS~H~~g~ffPgTG~~~eiG~g~G~g~~vNVPL~~G~~D~~y~~~f~~iv~pv 256 (499)
|+|.+||-+.-..|..++ ..++|+.||++...+ . ...+. ..+.+..+.+..|.. .
T Consensus 4 ~~l~fDIEt~~~~gfp~~--~~d~Ii~Is~~~~~g------~----------~~~~~---~~~~~E~~lL~~F~~----~ 58 (188)
T cd05781 4 KTLAFDIEVYSKYGTPNP--RRDPIIVISLATSNG------D----------VEFIL---AEGLDDRKIIREFVK----Y 58 (188)
T ss_pred eEEEEEEEecCCCCCCCC--CCCCEEEEEEEeCCC------C----------EEEEE---ecCCCHHHHHHHHHH----H
Confidence 899999999855564332 347899999866411 0 01111 124566677766644 5
Q ss_pred HhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhcCCCE
Q 010834 257 MEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPL 303 (499)
Q Consensus 257 ~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~~~pl 303 (499)
+.+++||+|+ |+.+...| ..-+.+.++.+++++
T Consensus 59 i~~~dPd~i~---gyN~~~FD-----------lpyl~~Ra~~~gi~~ 91 (188)
T cd05781 59 VKEYDPDIIV---GYNSNAFD-----------WPYLVERARVLGVKL 91 (188)
T ss_pred HHHcCCCEEE---ecCCCcCc-----------HHHHHHHHHHhCCCc
Confidence 6679999887 65555444 233555566666664
No 82
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=24.07 E-value=3.7e+02 Score=27.52 Aligned_cols=59 Identities=27% Similarity=0.405 Sum_probs=34.2
Q ss_pred HhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHh-c-CCCEEEEeCCCCCCchhhHHHHHHHHHHcC
Q 010834 257 MEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRS-F-NVPLLLLGGGGYTIRNVARCWCYETGVALG 329 (499)
Q Consensus 257 ~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~-~-~~pll~lggGGY~~~~vAr~w~~~t~~llg 329 (499)
+..-.+|.|+++-=.-+..-| + +.++.+++ . ..| +++|||=++.|+++.|.+.-++.+|
T Consensus 167 ~~~~~aDavivtG~~TG~~~d------~------~~l~~vr~~~~~~P--vllggGvt~eNv~e~l~~adGviVg 227 (257)
T TIGR00259 167 VERGLADAVILSGKTTGTEVD------L------ELLKLAKETVKDTP--VLAGSGVNLENVEELLSIADGVIVA 227 (257)
T ss_pred HHhcCCCEEEECcCCCCCCCC------H------HHHHHHHhccCCCe--EEEECCCCHHHHHHHHhhCCEEEEC
Confidence 333458999886322222222 2 23444444 2 456 5779999999999998863333444
No 83
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=23.92 E-value=1.1e+02 Score=26.58 Aligned_cols=46 Identities=24% Similarity=0.218 Sum_probs=26.0
Q ss_pred echHHHHHHHHHhcCCcEEEEEccccCCccchh-----ccccCCCEEEeecCCC
Q 010834 161 VNDIVLAILELLKQHERVLYVDIDIHHGDGVEE-----AFYTTDRVMTVSFHKF 209 (499)
Q Consensus 161 ~NdiaiAi~~Llk~~~RVl~IDiDvHHGDGtqe-----aF~~d~rVltiS~H~~ 209 (499)
..++ -.+..+.+++.-++++| ++|. .++.. .-.....+++.|+||.
T Consensus 108 ~~~~-~~l~~~~~~~~~~li~D-~a~~-~~~~~~~~~~~~~~~~d~~~~s~~K~ 158 (170)
T cd01494 108 LVPL-KEIRKIAKEYGILLLVD-AASA-GGASPAPGVLIPEGGADVVTFSLHKN 158 (170)
T ss_pred EcCH-HHHHHHHHHcCCEEEEe-cccc-cccccccccccccccCCEEEEEcccc
Confidence 3344 33444555666677776 3444 33332 2223467999999997
No 84
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=23.81 E-value=1.1e+02 Score=27.82 Aligned_cols=48 Identities=8% Similarity=0.081 Sum_probs=26.9
Q ss_pred HhhcCCcEEEEecCCCCCCCCCCCccccCH----HhHHHHHHHHH--hcCCCEEEE
Q 010834 257 MEVFRPGAVVLQCGADSLSGDRLGCFNLSI----KGHAECVKFMR--SFNVPLLLL 306 (499)
Q Consensus 257 ~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~----~g~~~~~~~l~--~~~~pll~l 306 (499)
+...+||+|+|++|..=....+. -..++ +.+.++++.++ .-+.+++++
T Consensus 57 ~~~~~~d~v~l~~G~ND~~~~~~--~~~~~~~~~~~l~~~v~~~~~~~~~~~ii~~ 110 (191)
T cd01834 57 VLPAKPDVVSIMFGINDSFRGFD--DPVGLEKFKTNLRRLIDRLKNKESAPRIVLV 110 (191)
T ss_pred cccCCCCEEEEEeecchHhhccc--ccccHHHHHHHHHHHHHHHHcccCCCcEEEE
Confidence 34578999999999644332110 02333 34556667664 224555554
No 85
>COG2047 Uncharacterized protein (ATP-grasp superfamily) [General function prediction only]
Probab=23.67 E-value=1.2e+02 Score=30.84 Aligned_cols=46 Identities=17% Similarity=0.389 Sum_probs=32.8
Q ss_pred CCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhcCCCEEEEeCCCCCC
Q 010834 261 RPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTI 313 (499)
Q Consensus 261 ~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~~~pll~lggGGY~~ 313 (499)
.+|+||+.- |.-+.++.|++.|+. +++++.+.++.+.+..+|| |..
T Consensus 83 ~~Dliil~G--d~Q~~~~~gqyel~~----~~Ld~a~e~g~~~IyTLGG-y~v 128 (258)
T COG2047 83 ERDLIILVG--DTQATSSEGQYELTG----KILDIAKEFGARMIYTLGG-YGV 128 (258)
T ss_pred CCcEEEEec--cccccCcchhHHHHH----HHHHHHHHcCCcEEEEecC-ccc
Confidence 457777753 555577788888863 3777888899998888865 653
No 86
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=23.46 E-value=1.7e+02 Score=26.76 Aligned_cols=41 Identities=12% Similarity=0.222 Sum_probs=22.4
Q ss_pred hcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhc
Q 010834 259 VFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSF 299 (499)
Q Consensus 259 ~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~ 299 (499)
.++||+|||+.|..=..........--.+.+.++++.+++.
T Consensus 65 ~~~pd~Vii~~G~ND~~~~~~~~~~~~~~~l~~li~~i~~~ 105 (188)
T cd01827 65 AFNPNIVIIKLGTNDAKPQNWKYKDDFKKDYETMIDSFQAL 105 (188)
T ss_pred ccCCCEEEEEcccCCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 47999999999975332211000000123455667766654
No 87
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=23.39 E-value=1.8e+02 Score=30.82 Aligned_cols=64 Identities=19% Similarity=0.283 Sum_probs=41.1
Q ss_pred HHHHHHHhHHhhcCCcEEEEecC-CCCCCCCCCCccccCHHhHHHHHHHHH-hcCCCEEEEeCCCCCCchhhHHHH
Q 010834 248 LFKPIIGKVMEVFRPGAVVLQCG-ADSLSGDRLGCFNLSIKGHAECVKFMR-SFNVPLLLLGGGGYTIRNVARCWC 321 (499)
Q Consensus 248 ~f~~iv~pv~~~f~PdlIVvqaG-~Dsl~gDpLG~~nLS~~g~~~~~~~l~-~~~~pll~lggGGY~~~~vAr~w~ 321 (499)
-++..|..+.+.|+|++|+|..+ .....||.+ ..+++.++ ..+.|++.+--.||...+....|.
T Consensus 74 ~L~~~i~~~~~~~~P~~i~v~~tC~~~~iGdDi----------~~v~~~~~~~~~~~vi~v~t~gf~g~~~~~G~~ 139 (406)
T cd01967 74 KLKKAIKEAYERFPPKAIFVYSTCPTGLIGDDI----------EAVAKEASKELGIPVIPVNCEGFRGVSQSLGHH 139 (406)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCchhhhccCH----------HHHHHHHHHhhCCCEEEEeCCCeeCCcccHHHH
Confidence 45566777888999997766544 455556542 23444443 457899999988887744444444
No 88
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=23.32 E-value=1.5e+02 Score=32.74 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=26.3
Q ss_pred hHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhcCCCEEEEeCCCC
Q 010834 255 KVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGY 311 (499)
Q Consensus 255 pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~~~pll~lggGGY 311 (499)
..+.+++||+|.+++ +..+...-.++++.+|+..-.+.+|+||..
T Consensus 57 ~~l~~~~pdvVgis~------------~t~~~~~a~~~~~~~k~~~P~~~iV~GG~h 101 (497)
T TIGR02026 57 ERLRAHCPDLVLITA------------ITPAIYIACETLKFARERLPNAIIVLGGIH 101 (497)
T ss_pred HHHHhcCcCEEEEec------------CcccHHHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 456778999999974 112333334566777766433444555543
No 89
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=23.07 E-value=1.1e+02 Score=29.56 Aligned_cols=49 Identities=27% Similarity=0.516 Sum_probs=27.7
Q ss_pred HHhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHH----HHHHHHhc--CCCEEEEeCCCCC
Q 010834 253 IGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAE----CVKFMRSF--NVPLLLLGGGGYT 312 (499)
Q Consensus 253 v~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~----~~~~l~~~--~~pll~lggGGY~ 312 (499)
+...+.+.+++++++.||.. .+.+.|.+ .++.+++. ..|+|++--=+|.
T Consensus 51 ~a~~ia~~~a~~~~ld~~~N-----------~~~~~~~~~~~~fv~~iR~~hP~tPIllv~~~~~~ 105 (178)
T PF14606_consen 51 VADLIAEIDADLIVLDCGPN-----------MSPEEFRERLDGFVKTIREAHPDTPILLVSPIPYP 105 (178)
T ss_dssp HHHHHHHS--SEEEEEESHH-----------CCTTTHHHHHHHHHHHHHTT-SSS-EEEEE----T
T ss_pred HHHHHhcCCCCEEEEEeecC-----------CCHHHHHHHHHHHHHHHHHhCCCCCEEEEecCCcc
Confidence 44555667889999999977 45555554 34455554 6899987433333
No 90
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=23.00 E-value=38 Score=27.33 Aligned_cols=51 Identities=22% Similarity=0.514 Sum_probs=40.5
Q ss_pred HHHHhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhH----HHHHHHHHhcCC
Q 010834 251 PIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGH----AECVKFMRSFNV 301 (499)
Q Consensus 251 ~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~----~~~~~~l~~~~~ 301 (499)
++|..+.++|+-++=|++++.|...+.|+|.+-+...|- .+..++|++.++
T Consensus 17 piis~l~~~~~v~~nIl~g~i~~i~~~~~G~l~l~l~g~~~~~~~a~~~L~~~~v 71 (76)
T PF09383_consen 17 PIISQLIREFGVDVNILHGNIEEIQGTPFGILILELPGDDEEIEKAIAYLREQGV 71 (76)
T ss_dssp CHHHHHHHHHT-EEEEEEEEEEEETTEEEEEEEEEEES-HHHHHHHHHHHHHTTE
T ss_pred hHHHHHHHHhCCCEEEEEEEeEEcCCeeEEEEEEEEECCHHHHHHHHHHHHHCCC
Confidence 678889999999999999999999999999987766444 456667776554
No 91
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=22.57 E-value=1.2e+02 Score=24.89 Aligned_cols=19 Identities=11% Similarity=0.408 Sum_probs=14.0
Q ss_pred HHHhcCCCEEEEeCCCCCC
Q 010834 295 FMRSFNVPLLLLGGGGYTI 313 (499)
Q Consensus 295 ~l~~~~~pll~lggGGY~~ 313 (499)
.++.++.+=+.++.|||..
T Consensus 91 ~l~~~g~~~v~~l~GG~~~ 109 (113)
T PF00581_consen 91 ILKKLGFKNVYILDGGFEA 109 (113)
T ss_dssp HHHHTTTSSEEEETTHHHH
T ss_pred HHHHcCCCCEEEecChHHH
Confidence 4666777667888999873
No 92
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=22.22 E-value=1.7e+02 Score=28.87 Aligned_cols=52 Identities=13% Similarity=0.195 Sum_probs=34.5
Q ss_pred EEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhc-CCCEEEEeCCCCCCchh
Q 010834 264 AVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSF-NVPLLLLGGGGYTIRNV 316 (499)
Q Consensus 264 lIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~-~~pll~lggGGY~~~~v 316 (499)
+|||-.|--.+..+. +.-.+...-..++++.++.. +.++++|.|||.-....
T Consensus 1 ~iVIKiGGs~l~~~~-~~~~~~~~~l~~l~~~l~~l~g~~vvlVhGgg~~~~~~ 53 (252)
T cd04241 1 MIILKLGGSVITDKD-RPETIREENLERIARELAEAIDEKLVLVHGGGSFGHPK 53 (252)
T ss_pred CEEEEEeceEEEcCC-CCCccCHHHHHHHHHHHHhccCCCEEEEECCCcccCHH
Confidence 367777766665432 22335556667778888877 88888888888765433
No 93
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=22.07 E-value=1.8e+02 Score=31.28 Aligned_cols=67 Identities=13% Similarity=0.293 Sum_probs=43.5
Q ss_pred HHHHHHHHhHHhhcCCcEEEEecCC-CCCCCCCCCccccCHHhHHHHHHHHH-hcCCCEEEEeCCCCCCchhhHHHHHH
Q 010834 247 YLFKPIIGKVMEVFRPGAVVLQCGA-DSLSGDRLGCFNLSIKGHAECVKFMR-SFNVPLLLLGGGGYTIRNVARCWCYE 323 (499)
Q Consensus 247 ~~f~~iv~pv~~~f~PdlIVvqaG~-Dsl~gDpLG~~nLS~~g~~~~~~~l~-~~~~pll~lggGGY~~~~vAr~w~~~ 323 (499)
.-++..|..+.+.|+|++|+|...+ ..+.||-+ ..+++.++ +.++|++.+--.||...+....|...
T Consensus 75 ~kL~~aI~~~~~~~~P~~I~V~ttC~~~iIGdDi----------~~v~~~~~~~~~~pvi~v~t~gf~g~~~~~G~~~a 143 (426)
T cd01972 75 KKLEDTIKEAYSRYKPKAIFVATSCATGIIGDDV----------ESVVEELEDEIGIPVVALHCEGFKGKHWRSGFDAA 143 (426)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCChHHHhccCH----------HHHHHHHHHhhCCCEEEEeCCccCCccHhHHHHHH
Confidence 3455667778889999988776654 33445432 23444443 46899999999999875444444433
No 94
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=21.44 E-value=2.8e+02 Score=23.57 Aligned_cols=96 Identities=16% Similarity=0.146 Sum_probs=60.5
Q ss_pred HHHHHhcCCcEEEEEccccCCccchhccccCCCEEEeecCCCCCCCCCCCCCccccCCCCCceeeccCCCCCCChHHHHH
Q 010834 168 ILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHY 247 (499)
Q Consensus 168 i~~Llk~~~RVl~IDiDvHHGDGtqeaF~~d~rVltiS~H~~g~ffPgTG~~~eiG~g~G~g~~vNVPL~~G~~D~~y~~ 247 (499)
+..|++..-.|-++|.+++..+-++.+-...+++.-+|.+... .+.
T Consensus 21 a~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~---------------------------------~~~- 66 (121)
T PF02310_consen 21 AAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVSMTP---------------------------------NLP- 66 (121)
T ss_dssp HHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESSST---------------------------------HHH-
T ss_pred HHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccCcC---------------------------------cHH-
Confidence 3445554568999999998877777777778999999975421 121
Q ss_pred HHHHHHHhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHh-cCCCEEEEeCCCCCC
Q 010834 248 LFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRS-FNVPLLLLGGGGYTI 313 (499)
Q Consensus 248 ~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~-~~~pll~lggGGY~~ 313 (499)
....++. .+++..|+++|+.-|.-+ +.. ... .++. .+.-.++.|+|-+..
T Consensus 67 ~~~~l~~-~~k~~~p~~~iv~GG~~~---------t~~---~~~---~l~~~~~~D~vv~GegE~~~ 117 (121)
T PF02310_consen 67 EAKRLAR-AIKERNPNIPIVVGGPHA---------TAD---PEE---ILREYPGIDYVVRGEGEEAF 117 (121)
T ss_dssp HHHHHHH-HHHTTCTTSEEEEEESSS---------GHH---HHH---HHHHHHTSEEEEEETTSSHH
T ss_pred HHHHHHH-HHHhcCCCCEEEEECCch---------hcC---hHH---HhccCcCcceecCCChHHhh
Confidence 2234343 378899999999887321 111 111 2333 466788899986654
No 95
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=21.37 E-value=1.1e+02 Score=26.19 Aligned_cols=15 Identities=53% Similarity=0.930 Sum_probs=14.0
Q ss_pred CCcEEEEEccccCCc
Q 010834 175 HERVLYVDIDIHHGD 189 (499)
Q Consensus 175 ~~RVl~IDiDvHHGD 189 (499)
..+|++||.|.++++
T Consensus 29 ~~~~~l~d~d~~~~~ 43 (106)
T cd03111 29 GRRVLLVDLDLQFGD 43 (106)
T ss_pred CCcEEEEECCCCCCC
Confidence 789999999999987
No 96
>PRK10818 cell division inhibitor MinD; Provisional
Probab=21.16 E-value=1e+02 Score=30.57 Aligned_cols=17 Identities=18% Similarity=0.425 Sum_probs=14.4
Q ss_pred hcCCcEEEEEccccCCc
Q 010834 173 KQHERVLYVDIDIHHGD 189 (499)
Q Consensus 173 k~~~RVl~IDiDvHHGD 189 (499)
+..+||++||+|.+.||
T Consensus 29 ~~g~~vllvD~D~~~~~ 45 (270)
T PRK10818 29 QKGKKTVVIDFDIGLRN 45 (270)
T ss_pred HCCCeEEEEECCCCCCC
Confidence 45689999999998776
No 97
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=20.86 E-value=3.1e+02 Score=29.63 Aligned_cols=67 Identities=15% Similarity=0.284 Sum_probs=40.7
Q ss_pred HHHHHHhHHhhcCCcEEEEecCCCC-CCCCCCCccccCHHhHHHHHHHHHh-----cCCCEEEEeCCCCCCchhhHHHHH
Q 010834 249 FKPIIGKVMEVFRPGAVVLQCGADS-LSGDRLGCFNLSIKGHAECVKFMRS-----FNVPLLLLGGGGYTIRNVARCWCY 322 (499)
Q Consensus 249 f~~iv~pv~~~f~PdlIVvqaG~Ds-l~gDpLG~~nLS~~g~~~~~~~l~~-----~~~pll~lggGGY~~~~vAr~w~~ 322 (499)
+++.|..+.++|+|++|+|..++=+ ..||- ...+++.++. .+.|++.+--.||.-. ....|..
T Consensus 69 L~~~i~~~~~~~~p~~I~V~ttc~~eiIGdD----------i~~v~~~~~~~~p~~~~~~vi~v~t~gf~g~-~~~G~~~ 137 (417)
T cd01966 69 LEEALDTLAERAKPKVIGLLSTGLTETRGED----------IAGALKQFRAEHPELADVPVVYVSTPDFEGS-LEDGWAA 137 (417)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcccccccC----------HHHHHHHHHhhccccCCCeEEEecCCCCCCc-HHHHHHH
Confidence 4455666778899998877765432 33442 2224443432 3789999999999874 4444544
Q ss_pred HHHH
Q 010834 323 ETGV 326 (499)
Q Consensus 323 ~t~~ 326 (499)
....
T Consensus 138 a~~a 141 (417)
T cd01966 138 AVEA 141 (417)
T ss_pred HHHH
Confidence 4333
No 98
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=20.73 E-value=99 Score=28.64 Aligned_cols=24 Identities=17% Similarity=0.412 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhHHhhcCCcEEEE
Q 010834 244 SYHYLFKPIIGKVMEVFRPGAVVL 267 (499)
Q Consensus 244 ~y~~~f~~iv~pv~~~f~PdlIVv 267 (499)
.+...+.+-+.+.+++++||+||-
T Consensus 72 ~~~~~~~~~l~~~l~~~~PD~IIs 95 (169)
T PF06925_consen 72 ALSRLFARRLIRLLREFQPDLIIS 95 (169)
T ss_pred HHHHHHHHHHHHHHhhcCCCEEEE
Confidence 455666677888899999999884
No 99
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=20.53 E-value=2.8e+02 Score=29.87 Aligned_cols=56 Identities=13% Similarity=0.262 Sum_probs=34.7
Q ss_pred HHHHHHHhHHhhcCCcEEEE-ecCCCCCCCCCCCccccCHHhHHHHHHHHHh-----cCCCEEEEeCCCCCC
Q 010834 248 LFKPIIGKVMEVFRPGAVVL-QCGADSLSGDRLGCFNLSIKGHAECVKFMRS-----FNVPLLLLGGGGYTI 313 (499)
Q Consensus 248 ~f~~iv~pv~~~f~PdlIVv-qaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~-----~~~pll~lggGGY~~ 313 (499)
-+++.|..+.+.|+|++|+| .+....+.||.+ ..+++.++. .+.|++.+--.||..
T Consensus 68 ~L~~~i~~~~~~~~p~~I~v~~tC~~~liGdDi----------~~v~~~~~~~~~~~~~~~vi~v~tpgf~g 129 (428)
T cd01965 68 NLIEALKNLLSRYKPDVIGVLTTCLTETIGDDV----------AGFIKEFRAEGPEPADFPVVYASTPSFKG 129 (428)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcchhhcCCCH----------HHHHHHHHhhccCCCCCeEEEeeCCCCCC
Confidence 34455667778899997655 444555666642 224444442 477888877777774
No 100
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=20.50 E-value=1.2e+02 Score=32.11 Aligned_cols=58 Identities=19% Similarity=0.443 Sum_probs=46.2
Q ss_pred HHHHHHhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHh----HHHHHHHHHhcCCCEEEE
Q 010834 249 FKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKG----HAECVKFMRSFNVPLLLL 306 (499)
Q Consensus 249 f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g----~~~~~~~l~~~~~pll~l 306 (499)
..+++..++++|..++=|++.+.|-..+.|+|.+-+...| ......++...+..+=++
T Consensus 276 ~~plis~~~~~~~v~~nIl~G~I~~~~~~~~G~L~v~l~g~~~~~~~a~~~l~~~~v~~evl 337 (339)
T COG1135 276 DQPLLSEVARRFGVDVNILSGNIDEIQGQPFGSLVVELEGDDEEIAAAIEYLNEHGVKVEVL 337 (339)
T ss_pred cchHHHHHHHHhCCceEEEecchhhhCCCcceEEEEEecCchhhHHHHHHHHHHcCceEEec
Confidence 3477888999999999999999999999999998776666 445666777766655444
No 101
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=20.16 E-value=4.8e+02 Score=28.43 Aligned_cols=61 Identities=18% Similarity=0.244 Sum_probs=42.8
Q ss_pred HHHHHHHHHHH-------HhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHH-HhcCCCEEEEeC
Q 010834 243 ESYHYLFKPII-------GKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFM-RSFNVPLLLLGG 308 (499)
Q Consensus 243 ~~y~~~f~~iv-------~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l-~~~~~pll~lgg 308 (499)
+.....|..+. ...++.|++|+|.|.+= ++||.| .+=|++-|+++++.+ ...+.|+++.+-
T Consensus 128 ~~i~~~~~dV~~dP~~wak~~V~~~~aD~Ialr~~----S~DP~~-~d~~~~e~a~~vk~V~~av~vPLIL~gs 196 (389)
T TIGR00381 128 KPIRMHFEDVMEDPAEWARKCVKEFGADMVTIHLI----STDPKL-DDKSPSEAAKVLEDVLQAVDVPIVIGGS 196 (389)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhCCCEEEEEec----CCCccc-cccCHHHHHHHHHHHHHhCCCCEEEeCC
Confidence 45555555544 23338899999999874 456643 566888999999987 556999976644
Done!