Your job contains 1 sequence.
>010835
MMATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNP
SFPSSNRQTQPIKALKEHVDTNFASTAEPWAEPPNSIEEESSELDYSVEALLLLQKSMLE
KQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSILQQNGSKQL
RSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGSSLR
ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF
DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGVTPSV
DRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGV
DDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVAL
EKLKHAARKKKMEAMLVKH
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 010835
(499 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2010871 - symbol:SIGA "AT1G64860" species:3702... 1714 1.7e-176 1
UNIPROTKB|O48655 - symbol:rsigA "Plastid RNA polymerase s... 1189 7.4e-121 1
UNIPROTKB|P0A602 - symbol:rpoD "RNA polymerase sigma fact... 403 1.7e-40 2
TAIR|locus:2025650 - symbol:SIG2 "AT1G08540" species:3702... 427 4.2e-40 1
TIGR_CMR|GSU_3089 - symbol:GSU_3089 "RNA polymerase sigma... 421 1.8e-39 1
TIGR_CMR|DET_0551 - symbol:DET_0551 "RNA polymerase sigma... 393 4.0e-39 2
TIGR_CMR|CBU_1596 - symbol:CBU_1596 "RNA polymerase sigma... 374 5.0e-39 3
UNIPROTKB|Q59563 - symbol:mysB "RNA polymerase sigma fact... 416 6.1e-39 1
TIGR_CMR|CHY_0455 - symbol:CHY_0455 "RNA polymerase sigma... 413 1.3e-38 1
TIGR_CMR|CJE_1081 - symbol:CJE_1081 "RNA polymerase sigma... 388 1.6e-38 2
TIGR_CMR|BA_4515 - symbol:BA_4515 "RNA polymerase sigma-4... 406 7.0e-38 1
TAIR|locus:2173249 - symbol:SIG4 "AT5G13730" species:3702... 400 3.0e-37 1
TIGR_CMR|SPO_1750 - symbol:SPO_1750 "RNA polymerase sigma... 387 3.5e-37 2
TIGR_CMR|SO_1284 - symbol:SO_1284 "RNA polymerase sigma-7... 377 1.8e-36 2
TIGR_CMR|ECH_0760 - symbol:ECH_0760 "RNA polymerase sigma... 376 3.4e-36 2
UNIPROTKB|P00579 - symbol:rpoD species:83333 "Escherichia... 367 7.5e-36 2
TIGR_CMR|APH_0576 - symbol:APH_0576 "RNA polymerase sigma... 389 1.3e-35 1
TIGR_CMR|CPS_4334 - symbol:CPS_4334 "RNA polymerase sigma... 370 1.5e-35 2
UNIPROTKB|Q9KUK1 - symbol:VC_0517 "RNA polymerase sigma f... 368 1.8e-35 2
TIGR_CMR|VC_0517 - symbol:VC_0517 "RNA polymerase sigma f... 368 1.8e-35 2
UNIPROTKB|Q84LK8 - symbol:SIG6 "Sig6" species:39947 "Oryz... 359 1.2e-34 2
TIGR_CMR|SO_3432 - symbol:SO_3432 "RNA polymerase sigma f... 373 2.2e-34 1
TAIR|locus:2057996 - symbol:SIGF "AT2G36990" species:3702... 367 1.4e-33 1
UNIPROTKB|P13445 - symbol:rpoS "RNA polymerase, sigma S (... 363 2.5e-33 1
TIGR_CMR|CBU_1669 - symbol:CBU_1669 "RNA polymerase sigma... 352 3.7e-32 1
TIGR_CMR|GSU_1525 - symbol:GSU_1525 "RNA polymerase sigma... 348 9.8e-32 1
TIGR_CMR|CPS_1079 - symbol:CPS_1079 "RNA polymerase sigma... 343 3.3e-31 1
TIGR_CMR|VC_0534 - symbol:VC_0534 "RNA polymerase sigma f... 319 1.6e-28 1
TIGR_CMR|NSE_0312 - symbol:NSE_0312 "RNA polymerase sigma... 283 5.1e-22 1
TAIR|locus:2084420 - symbol:SIGC "AT3G53920" species:3702... 274 4.3e-21 1
TIGR_CMR|CBU_1909 - symbol:CBU_1909 "RNA polymerase sigma... 228 3.8e-20 2
UNIPROTKB|O32728 - symbol:O32728 "RNA polymerase sigma fa... 242 7.5e-20 1
TIGR_CMR|SPO_1409 - symbol:SPO_1409 "RNA polymerase sigma... 240 1.3e-19 1
TIGR_CMR|BA_4294 - symbol:BA_4294 "RNA polymerase sigma-F... 234 5.7e-19 1
TIGR_CMR|GSU_0655 - symbol:GSU_0655 "RNA polymerase sigma... 227 3.3e-18 1
TAIR|locus:2167413 - symbol:SIGE "AT5G24120" species:3702... 246 5.0e-18 1
TIGR_CMR|SO_4583 - symbol:SO_4583 "RNA polymerase sigma-3... 224 7.1e-18 1
TIGR_CMR|CPS_0161 - symbol:CPS_0161 "RNA polymerase sigma... 222 1.2e-17 1
UNIPROTKB|P50511 - symbol:rpoH "RNA polymerase sigma-32 f... 217 4.1e-17 1
TIGR_CMR|VC_0150 - symbol:VC_0150 "RNA polymerase sigma-3... 217 4.1e-17 1
UNIPROTKB|Q84JN3 - symbol:SIG5 "Os05g0586600 protein" spe... 234 1.0e-16 1
TIGR_CMR|CHY_2055 - symbol:CHY_2055 "RNA polymerase sigma... 210 2.4e-16 1
TIGR_CMR|BA_4042 - symbol:BA_4042 "RNA polymerase sigma-G... 209 3.1e-16 1
TIGR_CMR|SPO_0406 - symbol:SPO_0406 "RNA polymerase sigma... 211 9.3e-16 1
TIGR_CMR|APH_0759 - symbol:APH_0759 "RNA polymerase sigma... 208 2.8e-15 1
TIGR_CMR|CHY_1959 - symbol:CHY_1959 "RNA polymerase sigma... 193 1.7e-14 1
UNIPROTKB|P0AGB3 - symbol:rpoH species:83333 "Escherichia... 201 2.5e-14 1
TIGR_CMR|ECH_0655 - symbol:ECH_0655 "RNA polymerase sigma... 192 7.8e-13 1
UNIPROTKB|Q9K5J6 - symbol:sigB "RNA polymerase sigma-B fa... 177 1.6e-11 1
TIGR_CMR|BA_0992 - symbol:BA_0992 "RNA polymerase sigma-B... 177 1.6e-11 1
TIGR_CMR|NSE_0341 - symbol:NSE_0341 "RNA polymerase sigma... 176 5.8e-11 1
TIGR_CMR|CHY_2056 - symbol:CHY_2056 "RNA polymerase sigma... 130 2.6e-09 2
UNIPROTKB|Q9KQD4 - symbol:VC_2066 "RNA polymerase sigma f... 156 5.6e-09 1
TIGR_CMR|VC_2066 - symbol:VC_2066 "RNA polymerase sigma f... 156 5.6e-09 1
TIGR_CMR|CPS_1519 - symbol:CPS_1519 "motility sigma facto... 153 1.1e-08 1
TIGR_CMR|GSU_3053 - symbol:GSU_3053 "RNA polymerase sigma... 152 2.0e-08 1
TIGR_CMR|BA_4043 - symbol:BA_4043 "RNA polymerase sigma-2... 124 1.6e-07 2
UNIPROTKB|Q7D5S2 - symbol:sigF "Alternative RNA polymeras... 142 3.9e-07 1
TIGR_CMR|CHY_0617 - symbol:CHY_0617 "RNA polymerase sigma... 109 2.3e-06 2
TIGR_CMR|BA_4566 - symbol:BA_4566 "RNA polymerase sigma-2... 132 4.0e-06 1
UNIPROTKB|Q48GG2 - symbol:fliA "RNA polymerase sigma fact... 132 4.1e-06 1
UNIPROTKB|Q884V7 - symbol:fliA "Motility sigma factor Fli... 132 4.6e-06 1
UNIPROTKB|O83707 - symbol:TP_0709 "RNA polymerase sigma f... 130 9.5e-06 1
UNIPROTKB|P0AEM6 - symbol:fliA "RNA polymerase, sigma 28 ... 126 2.1e-05 1
TIGR_CMR|CHY_1013 - symbol:CHY_1013 "RNA polymerase sigma... 126 2.5e-05 1
TIGR_CMR|BA_4115 - symbol:BA_4115 "prophage LambdaBa02, R... 126 3.9e-05 1
GENEDB_PFALCIPARUM|PFF1015w - symbol:PFF1015w "hypothetic... 130 7.5e-05 1
UNIPROTKB|C6KT48 - symbol:PFF1015w "Putative uncharacteri... 130 7.5e-05 1
TIGR_CMR|SO_3210 - symbol:SO_3210 "RNA polymerase sigma-2... 113 0.00063 1
>TAIR|locus:2010871 [details] [associations]
symbol:SIGA "AT1G64860" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS;IDA] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0071482 "cellular response to light stimulus"
evidence=IEP] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IDA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0001053 "plastid sigma factor activity" evidence=IMP]
[GO:2001141 "regulation of RNA biosynthetic process" evidence=IMP]
[GO:0071461 "cellular response to redox state" evidence=IDA]
[GO:0080005 "photosystem stoichiometry adjustment" evidence=IDA]
[GO:0006833 "water transport" evidence=RCA] [GO:0009651 "response
to salt stress" evidence=RCA] [GO:0009750 "response to fructose
stimulus" evidence=RCA] [GO:0016987 "sigma factor activity"
evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 EMBL:CP002684
GO:GO:0009507 GO:GO:0006355 GO:GO:0003677 GO:GO:0071461
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AC006193 GO:GO:0071482 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 GO:GO:0080005 eggNOG:COG0568 KO:K03086
EMBL:D89993 EMBL:AB019942 EMBL:AB004821 EMBL:AF015542 EMBL:Y14252
EMBL:AF024590 EMBL:AF325036 EMBL:AY062526 EMBL:AY093306
EMBL:AK316773 EMBL:Y14567 IPI:IPI00521776 IPI:IPI00991957
PIR:H96671 PIR:T52642 RefSeq:NP_001185314.1 RefSeq:NP_176666.1
UniGene:At.25556 HSSP:Q9EZJ8 ProteinModelPortal:O24629 SMR:O24629
IntAct:O24629 STRING:O24629 PRIDE:O24629 EnsemblPlants:AT1G64860.1
GeneID:842794 KEGG:ath:AT1G64860 GeneFarm:25 TAIR:At1g64860
InParanoid:O24629 OMA:DHKSRLK ProtClustDB:CLSN2679344
Genevestigator:O24629 GO:GO:0001053 Uniprot:O24629
Length = 502
Score = 1714 (608.4 bits), Expect = 1.7e-176, P = 1.7e-176
Identities = 357/517 (69%), Positives = 409/517 (79%)
Query: 2 MATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKXXXXXXX 61
MATAAVIGL+ GKRLLSSSFY+SD++EKF +ND S+ + STK+ + AKK
Sbjct: 1 MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASNYSPS 60
Query: 62 XXXXXRQTQPIKALKEHVDTNFASTAEPWA------EPPNXXXXXXXXLDYSVEALLLLQ 115
R TQ KALKE VD AST +PW E + +SVEA+LLLQ
Sbjct: 61 FPSSNRHTQSAKALKESVDV--ASTEKPWLPNGTDKELEEECYDDDDLISHSVEAILLLQ 118
Query: 116 KSMLEKQWNLSFERTVLTDSPSKKT--HKKVPV-TCSGVSARQRRLNSKKKI-LSQNKSI 171
KSMLEK WNLSFE+ V ++ P K T KK+PV TCSG+SARQRR+ +KKK ++ K++
Sbjct: 119 KSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTHVKAV 178
Query: 172 LQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRL 231
+ KQ+R GYVKGV+SE++L+H EVVRLSKKIK+GL LDDHK RL
Sbjct: 179 SDVSSGKQVR-------------GYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRL 225
Query: 232 KERLGS---------SLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADM 282
K+RLG SL+ISR ELQ+ LMEC LAREKL MSNVRLVMSIAQRYDN+GA+M
Sbjct: 226 KDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEM 285
Query: 283 ADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG 342
+DLVQGGLIGLLRGIEKFDSSKGF+ISTYVYWWIRQGVSRALV+NSRTLRLP HLHERLG
Sbjct: 286 SDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLG 345
Query: 343 LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGET 402
LIRNAKLRL+EKG+TPS+DRIAE LNMSQKKVRNATEA+ KVFSLDR+AFPSLNGLPGET
Sbjct: 346 LIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGET 405
Query: 403 HHSYIADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDIS 462
HHSYIAD R+ENNPWHG DD ALK+EV+KLI TLGERE+EIIRLYYGLDKECLTWEDIS
Sbjct: 406 HHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDIS 465
Query: 463 KRIGLSRERVRQVGLVALEKLKHAARKKKMEAMLVKH 499
KRIGLSRERVRQVGLVALEKLKHAARK+KMEAM++K+
Sbjct: 466 KRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 502
>UNIPROTKB|O48655 [details] [associations]
symbol:rsigA "Plastid RNA polymerase sigma factor"
species:39947 "Oryza sativa Japonica Group" [GO:0009416 "response
to light stimulus" evidence=IEP] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 GO:GO:0009507 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009416
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HSSP:Q9EZJ8 EMBL:AB005290 ProteinModelPortal:O48655 STRING:O48655
KEGG:dosa:Os08t0163400-01 Gramene:O48655 Uniprot:O48655
Length = 519
Score = 1189 (423.6 bits), Expect = 7.4e-121, P = 7.4e-121
Identities = 248/449 (55%), Positives = 322/449 (71%)
Query: 68 QTQPIKALKEHVDTNFASTAEPWAEPPNX-----XXXXXXXLDYSVEALLLLQKSMLEKQ 122
+ Q ++AL+ H A P PP L+ S+EA++LLQ+SMLEKQ
Sbjct: 77 RAQVMRALRHHSSAAAALAPPPPPPPPPTPSPASRAAHAHDLESSLEAIVLLQRSMLEKQ 136
Query: 123 WNLSFE-----RTV-LTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSILQQNG 176
W L F+ + L + + V V S VSARQRR++ +++ + K NG
Sbjct: 137 WELPFDDDNHAMAIGLAEDDDDTSKATVVVARSSVSARQRRMSGRRR--GRTK-----NG 189
Query: 177 SKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLG 236
+ +SPELIQ+R + Y++G VS+ELLTH +VV LS KIK G+ L + +LKE+LG
Sbjct: 190 AAHFA--VSPELIQSRNRIYLRGTVSKELLTHKQVVHLSHKIKDGIWLQQQRSKLKEKLG 247
Query: 237 S---------SLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 287
+ SL+IS PEL+S + E LARE L MSN+RLV+SIAQ+YDN+G ++ADL+Q
Sbjct: 248 NEPSYKQLAHSLKISPPELRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQ 307
Query: 288 GGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNA 347
GGLIGLLRGIEKFD+S+GF+ISTYVYWWIRQGVSRAL ENS+T RLP +LHERL IR A
Sbjct: 308 GGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALAENSKTFRLPTYLHERLIAIRGA 367
Query: 348 KLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYI 407
K LE++G+ P+++ IA LN+S+KKV NATEA+ KV SLD++AFPSLNGLPGET HSYI
Sbjct: 368 KYELEDQGIAPTIENIAGSLNISEKKVLNATEAVNKVLSLDQQAFPSLNGLPGETLHSYI 427
Query: 408 ADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGL 467
D V N+PWHG ++W LK+EVNKL+ TL ERER+IIRLY+G+ K+C TWEDIS++ GL
Sbjct: 428 EDQNVANDPWHGFEEWYLKEEVNKLLNSTLNERERDIIRLYHGIGKQCHTWEDISRQFGL 487
Query: 468 SRERVRQVGLVALEKLKHAARKKKMEAML 496
SRERVRQVGL+A+EKLKHAAR+K +EA+L
Sbjct: 488 SRERVRQVGLIAMEKLKHAARRKNLEALL 516
Score = 268 (99.4 bits), Expect = 1.6e-20, P = 1.6e-20
Identities = 84/251 (33%), Positives = 124/251 (49%)
Query: 1 MMATAAVIGLSAGKRLLSSSFYYSDIS-EKFSYI---NDLGSANSQVGSTKNVVAAKKXX 56
M AT AVIGLSAG RLLS+SF +D+ +K S G G + AA
Sbjct: 1 MTATPAVIGLSAGNRLLSASFGPTDLMPDKVSLGVGGGGGGGGGGGGGDAMSFAAAPATP 60
Query: 57 XXXXXXXXXXR-----QTQPIKALKEHVDTNFASTAEPWAEPPNX-----XXXXXXXLDY 106
+ + Q ++AL+ H A P PP L+
Sbjct: 61 KLTAVAAHRLKLSPHGRAQVMRALRHHSSAAAALAPPPPPPPPPTPSPASRAAHAHDLES 120
Query: 107 SVEALLLLQKSMLEKQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILS 166
S+EA++LLQ+SMLEKQW L F+ + + V AR ++++++ +S
Sbjct: 121 SLEAIVLLQRSMLEKQWELPFDDDNHAMAIGLAEDDDDTSKATVVVARSS-VSARQRRMS 179
Query: 167 QNKSILQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDD 226
+ +NG+ +SPELIQ+R + Y++G VS+ELLTH +VV LS KIK G+ L
Sbjct: 180 GRRRGRTKNGAAHFA--VSPELIQSRNRIYLRGTVSKELLTHKQVVHLSHKIKDGIWLQQ 237
Query: 227 HKLRLKERLGS 237
+ +LKE+LG+
Sbjct: 238 QRSKLKEKLGN 248
>UNIPROTKB|P0A602 [details] [associations]
symbol:rpoD "RNA polymerase sigma factor RpoD" species:1773
"Mycobacterium tuberculosis" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005618 "cell wall" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0009405 "pathogenesis" evidence=IMP] [GO:0009415
"response to water stimulus" evidence=IEP] [GO:0016987 "sigma
factor activity" evidence=IDA] [GO:0040007 "growth" evidence=IMP]
[GO:0052572 "response to host immune response" evidence=IEP]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012760
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0005886 GO:GO:0040007
GO:GO:0005618 GO:GO:0009405 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842580 GO:GO:0003677 GO:GO:0052572
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
HOGENOM:HOG000270273 GO:GO:0016987 GO:GO:0009415 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568 KO:K03086
TIGRFAMs:TIGR02393 EMBL:U10059 EMBL:U21134 PIR:B70531
RefSeq:NP_217219.1 RefSeq:NP_337278.1 RefSeq:YP_006516147.1
ProteinModelPortal:P0A602 SMR:P0A602 PRIDE:P0A602
EnsemblBacteria:EBMYCT00000003025 EnsemblBacteria:EBMYCT00000070252
GeneID:13319430 GeneID:887477 GeneID:925521 KEGG:mtc:MT2777
KEGG:mtu:Rv2703 KEGG:mtv:RVBD_2703 PATRIC:18127848
TubercuList:Rv2703 OMA:LMSEMAE ProtClustDB:PRK05901 Uniprot:P0A602
Length = 528
Score = 403 (146.9 bits), Expect = 1.7e-40, Sum P(2) = 1.7e-40
Identities = 102/310 (32%), Positives = 176/310 (56%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGSSLRIS-RPELQSILM 251
++ Y+K + LL E V L+K+I+ GL L ER G L + R ++ I
Sbjct: 228 VRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSER-GEKLPAAQRRDMMWICR 286
Query: 252 ECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTY 311
+ A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +KG+K STY
Sbjct: 287 DGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTY 346
Query: 312 VYWWIRQGVSRALVENSRTLRLPNHLHE---RLGLIRNAKLRLEEKGVTPSVDRIAEYLN 368
WWIRQ ++RA+ + +RT+R+P H+ E +LG I+ +L L++ G P+ + +A+ ++
Sbjct: 347 ATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQR-EL-LQDLGREPTPEELAKEMD 404
Query: 369 MSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETH-HSYIADNRVENNPWHGVDDWALKD 427
++ +KV + + SLD+ G G++ +I D+ V L+D
Sbjct: 405 ITPEKVLEIQQYAREPISLDQTI-----GDEGDSQLGDFIEDSEAVVAV-DAVSFTLLQD 458
Query: 428 EVNKLIIVTLGEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHA 486
++ ++ TL ERE ++RL +GL D + T ++I + G++RER+RQ+ + KL+H
Sbjct: 459 QLQS-VLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHP 517
Query: 487 ARKKKMEAML 496
+R + + L
Sbjct: 518 SRSQVLRDYL 527
Score = 44 (20.5 bits), Expect = 1.7e-40, Sum P(2) = 1.7e-40
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 133 TDSPSKKTHKKVPV-TCSGVSARQRRLNSK 161
TD P K+T K P + SG +R +K
Sbjct: 10 TDEPVKRTATKSPAASASGAKTGAKRTAAK 39
>TAIR|locus:2025650 [details] [associations]
symbol:SIG2 "AT1G08540" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0071482 "cellular response to light stimulus"
evidence=IEP;IMP] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=IDA;TAS] [GO:0009658 "chloroplast
organization" evidence=IMP] [GO:0006399 "tRNA metabolic process"
evidence=IMP] [GO:0001053 "plastid sigma factor activity"
evidence=IMP] [GO:2001141 "regulation of RNA biosynthetic process"
evidence=IMP] [GO:0009637 "response to blue light"
evidence=IGI;RCA] [GO:0010114 "response to red light"
evidence=IEP;RCA] [GO:0006098 "pentose-phosphate shunt"
evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
[GO:0009902 "chloroplast relocation" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010218
"response to far red light" evidence=RCA] [GO:0016117 "carotenoid
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0034660 "ncRNA metabolic process" evidence=RCA]
[GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00716
EMBL:CP002684 GO:GO:0009507 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009637
GO:GO:0010114 GO:GO:0009658 EMBL:AC006932 GO:GO:0006399
EMBL:AC003981 GO:GO:0071482 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 eggNOG:COG0568 UniGene:At.23349 HSSP:Q9EZJ8
GO:GO:0001053 EMBL:AB004293 EMBL:AB019943 EMBL:AB004820
EMBL:AF015543 EMBL:Y15362 EMBL:AK118947 EMBL:BT030346
IPI:IPI00546921 PIR:T00707 RefSeq:NP_172330.1
ProteinModelPortal:O22056 SMR:O22056 STRING:O22056 PRIDE:O22056
EnsemblPlants:AT1G08540.1 GeneID:837376 KEGG:ath:AT1G08540
TAIR:At1g08540 InParanoid:O22056 OMA:WIKQAVR PhylomeDB:O22056
ProtClustDB:CLSN2682814 Genevestigator:O22056 InterPro:IPR016262
PIRSF:PIRSF000767 Uniprot:O22056
Length = 572
Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
Identities = 116/356 (32%), Positives = 194/356 (54%)
Query: 154 RQRRLNSKKKILSQNKSILQQNGSKQLRSMISPELIQNRLKGYVKGVVSE-ELLTHAEVV 212
+ RR +K S S+ + K+ R +++ E+ N Y++ S +LLT E
Sbjct: 221 KARRAKGLEKTASGIPSVKTGSSPKKKR-LVAQEVDHNDPLRYLRMTTSSSKLLTVREEH 279
Query: 213 RLSKKIKTGLSLDDHKLRLKERLG---------SSLRISRPELQSILMECSLAREKLVMS 263
LS I+ L L+ + L ER G S+ + + L+ + +L ++K++ S
Sbjct: 280 ELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKS 339
Query: 264 NVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRA 323
N+RLV+SIA+ Y G ++ DLVQ G GL+RG EKFD++KGFK STY +WWI+Q V ++
Sbjct: 340 NIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKS 399
Query: 324 LVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRNATEAIG 382
L + SR +RLP H+ E ++ A+ +L E G P + IAE +S K++ +
Sbjct: 400 LSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPK 459
Query: 383 KVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWALKDEVNKLIIVTLGERER 442
SLD++ + N P E IAD + + ++ ++ +++K ++ +LG RE+
Sbjct: 460 PPRSLDQKIGMNQNLKPSEV----IADPEAVTSEDILIKEF-MRQDLDK-VLDSLGTREK 513
Query: 443 EIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKKMEAMLV 497
++IR +G+ D T ++I + +G+SRERVRQ+ A KLK+ R ++ LV
Sbjct: 514 QVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLV 569
Score = 302 (111.4 bits), Expect = 2.5e-24, P = 2.5e-24
Identities = 87/289 (30%), Positives = 158/289 (54%)
Query: 118 MLEKQWNLSF--ERTVLTDSPSKKTHKKVPVTCSGV-SARQRRLNSKKKILSQNKSILQQ 174
+LE+Q ++S T T+ +++ K + T SG+ S + KK++++Q +
Sbjct: 201 LLEEQPSVSLAVRSTRQTERKARRA-KGLEKTASGIPSVKTGSSPKKKRLVAQE--VDHN 257
Query: 175 NGSKQLR-SMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKE 233
+ + LR + S +L+ R + + + ++LL +L ++++T L+ +
Sbjct: 258 DPLRYLRMTTSSSKLLTVREEHELSAGI-QDLL------KL-ERLQTELTERSGRQPTFA 309
Query: 234 RLGSSLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGL 293
+ S+ + + L+ + +L ++K++ SN+RLV+SIA+ Y G ++ DLVQ G GL
Sbjct: 310 QWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 369
Query: 294 LRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-E 352
+RG EKFD++KGFK STY +WWI+Q V ++L + SR +RLP H+ E ++ A+ +L
Sbjct: 370 VRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYS 429
Query: 353 EKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGE 401
E G P + IAE +S K++ + SLD++ + N P E
Sbjct: 430 ETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSE 478
>TIGR_CMR|GSU_3089 [details] [associations]
symbol:GSU_3089 "RNA polymerase sigma factor RpoD"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012760
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF03979 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
RefSeq:NP_954130.1 ProteinModelPortal:Q748B8 SMR:Q748B8
GeneID:2686774 KEGG:gsu:GSU3089 PATRIC:22029033 OMA:REMGSVS
ProtClustDB:CLSK924660 BioCyc:GSUL243231:GH27-3063-MONOMER
Uniprot:Q748B8
Length = 577
Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
Identities = 113/356 (31%), Positives = 203/356 (57%)
Query: 151 VSARQRRLNSK-KKILSQNKSILQQNG--SKQLRSMISPELIQNRLKGYVKGVVSEELLT 207
++ R + L++K I+++ +I ++ G + L+ + + E + +K + E+
Sbjct: 243 IAQRLKELSAKVDTIMAEIAAIEKEAGVSADTLKEIAASEAVGKGIK-----LSLEDAQK 297
Query: 208 HAEVVRLSKKIKTGLSLDDHKLRLKERLGSSLR-ISRPELQSILMECSLAREKLVMSNVR 266
H + VR ++K K ++ + +E L +LR I R E +S LA+ +LV +N+R
Sbjct: 298 HEKKVRSAEK-KLKKVEEESGFKARE-LSDALRAIDRGEAKS-----KLAKSELVEANLR 350
Query: 267 LVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVE 326
LV+SIA++Y N G DL+Q G IGL++ ++KF+ +G+K STY WWIRQ ++RA+ +
Sbjct: 351 LVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIAD 410
Query: 327 NSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVF 385
+RT+R+P H+ E + LIR ++ ++E G PS + IAE +N+ KVR KV
Sbjct: 411 QARTIRIPVHMIETINKLIRTSRQLVQEIGREPSPEEIAERMNLPLDKVR-------KVL 463
Query: 386 SLDREAFPSLNGLPGETHHSYIADNRVEN----NPWHGVDDWALKDEVNKLIIVTLGERE 441
+ +E SL GE S++ D +E+ +P V L ++ + ++ TL RE
Sbjct: 464 KIAKEPI-SLETPIGEEEDSHLGDF-IEDKGVVSPLEAVIKANLSEQTAR-VLATLTPRE 520
Query: 442 REIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKKMEAML 496
+++R+ +G+ +K T E++ + ++RER+RQ+ AL KL+H +R KK+ + +
Sbjct: 521 EKVLRMRFGIGEKSDHTLEEVGQDFEVTRERIRQIEAKALRKLRHPSRAKKLRSFV 576
>TIGR_CMR|DET_0551 [details] [associations]
symbol:DET_0551 "RNA polymerase sigma factor RpoD"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR009042 InterPro:IPR012760 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
RefSeq:YP_181295.1 ProteinModelPortal:Q3Z904 SMR:Q3Z904
STRING:Q3Z904 GeneID:3230115 KEGG:det:DET0551 PATRIC:21608171
OMA:FISHLER ProtClustDB:CLSK935624
BioCyc:DETH243164:GJNF-551-MONOMER Uniprot:Q3Z904
Length = 520
Score = 393 (143.4 bits), Expect = 4.0e-39, Sum P(2) = 4.0e-39
Identities = 89/256 (34%), Positives = 149/256 (58%)
Query: 246 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKG 305
L ++ ++ A L+ +N+RLV+S+A+++ G + DL+Q G IGL+R +EKFD +G
Sbjct: 273 LDNLEIDAKRAERHLIQANLRLVVSVAKKHIGRGMPLLDLIQEGNIGLIRAVEKFDFHRG 332
Query: 306 FKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIA 364
FK STY WWIRQ ++RA+ + +RT+R+P H+ E + + + +L +K G P+ D IA
Sbjct: 333 FKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLLSISRQLSQKLGREPTPDEIA 392
Query: 365 EYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENN---PWHGVD 421
+++ +KVR I KV L SL GE S++ D + N P
Sbjct: 393 VEMDLPPEKVRE----IAKVSQLP----VSLESPIGEEEDSHLGDFIEDQNALAPPDAAS 444
Query: 422 DWALKDEVNKLIIVTLGEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVAL 480
LK++++ ++ +L RER +++L +GL D T E++ K ++RER+RQ+ AL
Sbjct: 445 RQLLKEQIDT-VLGSLTPRERRVLQLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKAL 503
Query: 481 EKLKHAARKKKMEAML 496
KL+H +R +K++ L
Sbjct: 504 RKLRHPSRSRKLKDYL 519
Score = 41 (19.5 bits), Expect = 4.0e-39, Sum P(2) = 4.0e-39
Identities = 19/91 (20%), Positives = 39/91 (42%)
Query: 188 LIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGSSLRISRPELQ 247
++ + ++ Y+ + LL+ + L+KK++ G + + + E+ G + L
Sbjct: 96 IVDDPVRMYLHEIGRVPLLSAEDEKTLAKKMEEGKRIREIRQECLEKRGRYPSAAESFL- 154
Query: 248 SILMECSLAREKLVMSNVRLVMSIAQRYDNM 278
+L E S A E L L M + N+
Sbjct: 155 CMLRELSQATEVLFQLGQELGMDTSASLKNV 185
>TIGR_CMR|CBU_1596 [details] [associations]
symbol:CBU_1596 "RNA polymerase sigma factor RpoD"
species:227377 "Coxiella burnetii RSA 493" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568 EMBL:AF273254
RefSeq:NP_820579.1 HSSP:P00579 ProteinModelPortal:Q83BB6 SMR:Q83BB6
PRIDE:Q83BB6 GeneID:1209506 KEGG:cbu:CBU_1596 PATRIC:17931957
HOGENOM:HOG000270272 KO:K03086 OMA:IEMNTDH ProtClustDB:CLSK914891
BioCyc:CBUR227377:GJ7S-1575-MONOMER TIGRFAMs:TIGR02393
Uniprot:Q83BB6
Length = 698
Score = 374 (136.7 bits), Expect = 5.0e-39, Sum P(3) = 5.0e-39
Identities = 81/246 (32%), Positives = 148/246 (60%)
Query: 256 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 315
A+++++ +N+RLV+SIA++Y N G DL+Q G IGL++ ++KF+ +G+K STY WW
Sbjct: 458 AKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 517
Query: 316 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 374
IRQ ++R++ + +RT+R+P H+ E + L R ++ L+E G+ + + + ++M ++KV
Sbjct: 518 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQILQETGIEATPEELGRRMDMPEEKV 577
Query: 375 RNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWALKD---EVNK 431
R KV + +E S+ GE S + D +E+ D+A E +
Sbjct: 578 R-------KVLKIAKEPI-SMETPIGEDEDSNLGDF-IEDINMESPVDFATSAGLMEATR 628
Query: 432 LIIVTLGEREREIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKK 490
I+ TL RE +++R+ +G+D T E++ K+ ++RER+RQ+ AL KL+H +R +
Sbjct: 629 EILSTLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRAE 688
Query: 491 KMEAML 496
K+ + +
Sbjct: 689 KLHSFI 694
Score = 48 (22.0 bits), Expect = 5.0e-39, Sum P(3) = 5.0e-39
Identities = 13/58 (22%), Positives = 32/58 (55%)
Query: 128 ERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSI-LQQNGSKQLRSMI 184
+++ +T + K T KK VT + + +L + K+ ++ KS+ + + SK+ ++ +
Sbjct: 6 KKSSVTKTKKKTTGKKARVTAKAKPSVKSKLKTVKRAPAKPKSVTVAKTKSKKEKAKV 63
Score = 43 (20.2 bits), Expect = 5.0e-39, Sum P(3) = 5.0e-39
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGL 222
Y++ + S ELLT + ++K+I+ G+
Sbjct: 190 YMREMGSVELLTREGEIVIAKRIEEGI 216
Score = 38 (18.4 bits), Expect = 2.6e-35, Sum P(2) = 2.6e-35
Identities = 15/66 (22%), Positives = 30/66 (45%)
Query: 147 TCSGVSARQRRLNSKKKILSQNKSILQ---QNGSKQLRSMIS--PELIQNRLKGYVKGVV 201
T V R + S + + + + ++ + G +Q+ + PELI+ +K Y V
Sbjct: 183 TTDPVRMYMREMGSVELLTREGEIVIAKRIEEGIRQVMGAVVQYPELIEKFIKEYDTIVA 242
Query: 202 SEELLT 207
+E L+
Sbjct: 243 TEGRLS 248
Score = 37 (18.1 bits), Expect = 6.9e-38, Sum P(3) = 6.9e-38
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 136 PSKKTHKKVPVTCSGVSARQRRLNSKKK--ILSQNKSI 171
PS+K V T + ++ R+ +K K + S+ K++
Sbjct: 2 PSRKKKSSVTKTKKKTTGKKARVTAKAKPSVKSKLKTV 39
>UNIPROTKB|Q59563 [details] [associations]
symbol:mysB "RNA polymerase sigma factor" species:1773
"Mycobacterium tuberculosis" [GO:0001666 "response to hypoxia"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009408 "response to heat"
evidence=IEP] [GO:0009410 "response to xenobiotic stimulus"
evidence=IEP] [GO:0016987 "sigma factor activity" evidence=IGI]
[GO:0019217 "regulation of fatty acid metabolic process"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] [GO:0043175 "RNA
polymerase core enzyme binding" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0050708 "regulation of protein secretion" evidence=IDA]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 GO:GO:0005829 GO:GO:0005886 GO:GO:0040007
GO:GO:0045893 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842580 GO:GO:0003677 GO:GO:0001666
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0019217 GO:GO:0009408 GO:GO:0009410 GO:GO:0050708
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 GO:GO:0043175 EMBL:U10059 KO:K03087 HSSP:Q9EZJ8
EMBL:AL123456 PIR:JC5011 RefSeq:NP_217226.1 RefSeq:NP_337285.1
RefSeq:YP_006516154.1 SMR:Q59563 EnsemblBacteria:EBMYCT00000003840
EnsemblBacteria:EBMYCT00000072906 GeneID:13319437 GeneID:888580
GeneID:925516 KEGG:mtc:MT2783 KEGG:mtu:Rv2710 KEGG:mtv:RVBD_2710
PATRIC:18127862 TubercuList:Rv2710 OMA:DHARDPV ProtClustDB:PRK07921
Uniprot:Q59563
Length = 323
Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
Identities = 102/301 (33%), Positives = 164/301 (54%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGSSLRISRPELQSILMECSL 255
Y+ G+ LL A V L+K+I+ GL + H L ++RLG + + +L +++ +
Sbjct: 30 YLNGIGKTALLNAAGEVELAKRIEAGLYAE-HLLETRKRLGEN---RKRDLAAVVRDGEA 85
Query: 256 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 315
AR L+ +N+RLV+S+A+RY G + DL+Q G +GL+R +EKFD +KGFK STY WW
Sbjct: 86 ARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYATWW 145
Query: 316 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAEYLNMSQKKV 374
IRQ ++R + + SRT+RLP HL E++ + K + + G + + +A + K+
Sbjct: 146 IRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGREATDEELAAESGIPIDKI 205
Query: 375 RNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWALKDEVNKLII 434
+ E SLD G+ +I D + + V L ++ ++
Sbjct: 206 NDLLEHSRDPVSLDMPVGSEEEAPLGD----FIEDAEAMSAE-NAVIAELLHTDIRS-VL 259
Query: 435 VTLGEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKKME 493
TL ERE ++IRL +GLD + T + I K GLSRERVRQ+ + KL+H R ++
Sbjct: 260 ATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLRHGERADRLR 319
Query: 494 A 494
+
Sbjct: 320 S 320
>TIGR_CMR|CHY_0455 [details] [associations]
symbol:CHY_0455 "RNA polymerase sigma factor RpoD"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007127 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 HOGENOM:HOG000270273
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
eggNOG:COG0568 KO:K03086 TIGRFAMs:TIGR02393 RefSeq:YP_359316.1
ProteinModelPortal:Q3AEW8 SMR:Q3AEW8 STRING:Q3AEW8 GeneID:3727139
KEGG:chy:CHY_0455 PATRIC:21274071 OMA:IDTIEDT ProtClustDB:PRK09210
BioCyc:CHYD246194:GJCN-456-MONOMER Uniprot:Q3AEW8
Length = 370
Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 102/293 (34%), Positives = 171/293 (58%)
Query: 212 VRLSKKIKTGLSLDDH-KLRLKERLGSSLRISRPELQSILMECSL-----AREKLVMSNV 265
V L I G+++DD ++ LKE +G + + PE + L + A+ KL +N+
Sbjct: 85 VDLDLTIPEGIAIDDPVRMYLKE-IGR-VPLLTPEEEIELAKRKEEGDEEAKRKLAEANL 142
Query: 266 RLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALV 325
RLV+SIA+RY G DL+Q G +GLL+ +EKFD KG+K STY WWIRQ ++RA+
Sbjct: 143 RLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYRKGYKFSTYATWWIRQAITRAIA 202
Query: 326 ENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKV 384
+ +RT+R+P H+ E + LIR ++ L+E G P+ + IA+ + +S+ KVR + +
Sbjct: 203 DQARTIRIPVHMVETINKLIRVSRNLLQELGREPTPEEIAKEMGISEDKVREIMKIAQEP 262
Query: 385 FSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREI 444
SL+ G ++H ++ P L++++++ ++ TL ERE+++
Sbjct: 263 VSLETPI-----GEEEDSHLGDFVEDPDAKAPVEEASYTLLREQLDE-VLKTLTEREQKV 316
Query: 445 IRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKKMEAML 496
+RL +GLD T E++ + G++RER+RQ+ AL KL+H +R KK++ L
Sbjct: 317 LRLRFGLDDGRARTLEEVGQIFGVTRERIRQIEAKALRKLRHPSRSKKLKDFL 369
>TIGR_CMR|CJE_1081 [details] [associations]
symbol:CJE_1081 "RNA polymerase sigma factor RpoD"
species:195099 "Campylobacter jejuni RM1221" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR009042 InterPro:IPR012760 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
ProtClustDB:PRK05658 RefSeq:YP_179074.1 ProteinModelPortal:Q5HUG1
SMR:Q5HUG1 STRING:Q5HUG1 GeneID:3231590 KEGG:cjr:CJE1081
PATRIC:20043971 OMA:ILDAICS BioCyc:CJEJ195099:GJC0-1107-MONOMER
Uniprot:Q5HUG1
Length = 622
Score = 388 (141.6 bits), Expect = 1.6e-38, Sum P(2) = 1.6e-38
Identities = 100/291 (34%), Positives = 168/291 (57%)
Query: 207 THAEVVRLSK-KIKTGLSLDDHKLRLKERLGSSLRISRPELQSILMECSLAREKLVMSNV 265
T+ E+ +L + K + S D K RLKE L +I R + I E A+ ++ SN+
Sbjct: 339 TYMEIKKLFQTKEASEKSFDLEKSRLKEILE---QIKRGK--KISDE---AKGRMAKSNL 390
Query: 266 RLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALV 325
RLV+SIA+RY N G DL+Q G IGL++ ++KF+ +G+K STY WWIRQ +SRA+
Sbjct: 391 RLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAISRAIA 450
Query: 326 ENSRTLRLPNHLHERLGLIRNA-KLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKV 384
+ +RT+R+P H+ E + I + L++ G P V IA+ + +S KV+ + +
Sbjct: 451 DQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVIKITKEP 510
Query: 385 FSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREI 444
SL+ +G G+ ++ D + H + D LK+++++ ++ L +RE+ +
Sbjct: 511 ISLEAPIGNEDDGKFGD----FVEDRNSLSPMDHILKD-DLKEQIDE-VLDQLNDREKAV 564
Query: 445 IRLYYGL--DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKKME 493
IR+ +GL D+ T E+I K + ++RERVRQ+ A++KLKH +K++
Sbjct: 565 IRMRFGLMDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLK 615
Score = 49 (22.3 bits), Expect = 1.6e-38, Sum P(2) = 1.6e-38
Identities = 28/113 (24%), Positives = 49/113 (43%)
Query: 125 LSFERTV--LTDSPSKKTHKKVPVTC--------SGVSARQRRLNSKKKILSQNKSILQQ 174
+++E+ V LT PS T KKV S Q + K L + K LQ
Sbjct: 22 ITYEKLVKYLTKQPSASTAKKVQALMKKHKVQLFSAAEIAQMKNIEDAKRLQEEKQKLQD 81
Query: 175 NGSKQLRSMISP-ELIQ-NR----LKGYVKGVVSEELLTHAEVVRLSKKIKTG 221
+ + + +L++ +R ++ Y++ + LL E + +SKKI+ G
Sbjct: 82 TSLENEFDLANENDLLEWSRSDSPVRMYLREMGQIALLNKDEEIEISKKIELG 134
>TIGR_CMR|BA_4515 [details] [associations]
symbol:BA_4515 "RNA polymerase sigma-43 factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012760
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF03979 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 KO:K03086 TIGRFAMs:TIGR02393 HSSP:Q9EZJ8
ProtClustDB:PRK09210 RefSeq:NP_846739.1 RefSeq:YP_021160.1
RefSeq:YP_030442.1 ProteinModelPortal:Q81LU5 SMR:Q81LU5
IntAct:Q81LU5 DNASU:1088240 EnsemblBacteria:EBBACT00000011556
EnsemblBacteria:EBBACT00000017175 EnsemblBacteria:EBBACT00000020140
GeneID:1088240 GeneID:2819028 GeneID:2852221 KEGG:ban:BA_4515
KEGG:bar:GBAA_4515 KEGG:bat:BAS4194 OMA:AERMSSF
BioCyc:BANT260799:GJAJ-4250-MONOMER
BioCyc:BANT261594:GJ7F-4392-MONOMER Uniprot:Q81LU5
Length = 373
Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
Identities = 114/380 (30%), Positives = 201/380 (52%)
Query: 132 LTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSILQQNGSKQLRSMISP--ELI 189
+ D P++ + +T V + L K+ +L+ + + NG + + E +
Sbjct: 1 MADKPARSKQIETEMTLEQVKEQLTELGKKRGVLTYEEIAERMNGFEIESDQMDEYYEYL 60
Query: 190 QNR---LKG-YVKGVVSEELLTHAEVVRLSK-KIKTGLSLDDH-KLRLKERLGSSLRISR 243
+ L G +G + ++ E L+ + G+ ++D ++ LKE +G +S
Sbjct: 61 GEQGIDLVGDNDEGPNNHQITKTEEEFDLNDLSVPPGVKINDPVRMYLKE-IGRVDLLSA 119
Query: 244 PE---LQSILMECSL-AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEK 299
E L + + E A+ +L +N+RLV+SIA+RY G DL+Q G +GL++ +EK
Sbjct: 120 EEEIRLATRIEEGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEK 179
Query: 300 FDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTP 358
FD KGFK STY WWIRQ ++RA+ + +RT+R+P H+ E + LIR + L++ G P
Sbjct: 180 FDYRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREP 239
Query: 359 SVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETH-HSYIADNRVENNPW 417
S + I E ++++ +KVR + + SL+ G ++H +I D +
Sbjct: 240 SPEEIGEEMDLAPEKVREILKIAQEPVSLETPI-----GEEDDSHLGDFIEDQEATSPAD 294
Query: 418 HGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVG 476
H + LK+++ ++ TL +RE ++RL +GLD T E++ K G++RER+RQ+
Sbjct: 295 HAAYE-LLKEQLED-VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIE 352
Query: 477 LVALEKLKHAARKKKMEAML 496
AL KL+H +R K+++ L
Sbjct: 353 AKALRKLRHPSRSKRLKDFL 372
>TAIR|locus:2173249 [details] [associations]
symbol:SIG4 "AT5G13730" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=TAS] [GO:0016987 "sigma factor activity" evidence=ISS]
[GO:0071482 "cellular response to light stimulus" evidence=IEP]
[GO:0001053 "plastid sigma factor activity" evidence=IMP]
[GO:2001141 "regulation of RNA biosynthetic process" evidence=IMP]
[GO:0000023 "maltose metabolic process" evidence=RCA] [GO:0006098
"pentose-phosphate shunt" evidence=RCA] [GO:0016556 "mRNA
modification" evidence=RCA] [GO:0019252 "starch biosynthetic
process" evidence=RCA] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 EMBL:CP002688
GO:GO:0009507 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AB006704 GO:GO:0071482
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HSSP:Q9EZJ8 GO:GO:0001053 EMBL:AF101075 EMBL:AB021119 EMBL:AY059907
EMBL:AY114689 IPI:IPI00548771 PIR:T51715 RefSeq:NP_196877.1
UniGene:At.43777 UniGene:At.49018 ProteinModelPortal:Q9ZSL6
SMR:Q9ZSL6 STRING:Q9ZSL6 PRIDE:Q9ZSL6 EnsemblPlants:AT5G13730.1
GeneID:831218 KEGG:ath:AT5G13730 GeneFarm:27 TAIR:At5g13730
InParanoid:Q9ZSL6 OMA:PENMVKR PhylomeDB:Q9ZSL6
ProtClustDB:CLSN2687040 Genevestigator:Q9ZSL6 Uniprot:Q9ZSL6
Length = 419
Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
Identities = 109/297 (36%), Positives = 156/297 (52%)
Query: 197 VKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKER------LGSSLRISRPELQSIL 250
V G L+ E V+L +K G L++ ++E L S + IL
Sbjct: 114 VVGASRSGFLSRLEEVQLCLYLKEGAKLENLGTSVEENEMVSVLLASGRGKKKRSANEIL 173
Query: 251 MECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKIST 310
AREK+ RLV+SIA Y G ++ DL+Q G IGLLRG E+FD +G+K+ST
Sbjct: 174 CRRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYKLST 233
Query: 311 YVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAEYLNM 369
YVYWWI+Q + RA+ SR ++LP + E + A L K PS + IAE+LN+
Sbjct: 234 YVYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNL 293
Query: 370 SQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWALKDEV 429
+ VR A E SLDR A S NG I E P V +K E+
Sbjct: 294 NVSAVRLAVERSRSPVSLDRVA--SQNG---RMTLQEIVRGPDETRPEEMVKREHMKHEI 348
Query: 430 NKLIIVTLGEREREIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQVGLVALEKLKH 485
+L+ +L RE ++ LY+GL+ E +++E+I K + LSRERVRQ+ +AL+KL++
Sbjct: 349 EQLL-GSLTARESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIALKKLRN 404
>TIGR_CMR|SPO_1750 [details] [associations]
symbol:SPO_1750 "RNA polymerase sigma-70 factor RpoD"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007127
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR007631 InterPro:IPR009042 InterPro:IPR012760
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF03979 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
Pfam:PF04546 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
ProtClustDB:PRK05658 RefSeq:YP_166988.1 ProteinModelPortal:Q5LSL7
SMR:Q5LSL7 GeneID:3193502 KEGG:sil:SPO1750 PATRIC:23376823
OMA:YQGSELD Uniprot:Q5LSL7
Length = 660
Score = 387 (141.3 bits), Expect = 3.5e-37, Sum P(2) = 3.5e-37
Identities = 85/250 (34%), Positives = 147/250 (58%)
Query: 252 ECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTY 311
E A++++V +N+RLV+SIA++Y N G DL+Q G IGL++ ++KF+ +G+K STY
Sbjct: 418 EARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY 477
Query: 312 VYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMS 370
WWIRQ ++R++ + +RT+R+P H+ E + L+R + L E G P+ + +AE L M
Sbjct: 478 ATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMP 537
Query: 371 QKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWALKD--- 427
+KVR KV + +E SL G+ S + D + N +D A+++
Sbjct: 538 LEKVR-------KVMKIAKEPI-SLETPIGDEEDSQLGDFIEDKNAVLPLDS-AIQENLK 588
Query: 428 EVNKLIIVTLGEREREIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQVGLVALEKLKHA 486
E ++ +L RE ++R+ +G+ T E++ ++ ++RER+RQ+ AL KLKH
Sbjct: 589 ETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHP 648
Query: 487 ARKKKMEAML 496
+R +K+ + L
Sbjct: 649 SRSRKLRSFL 658
Score = 40 (19.1 bits), Expect = 3.5e-37, Sum P(2) = 3.5e-37
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTG 221
Y++ + S ELL+ + ++K+I+ G
Sbjct: 120 YLREMGSVELLSREGEIAIAKRIEAG 145
>TIGR_CMR|SO_1284 [details] [associations]
symbol:SO_1284 "RNA polymerase sigma-70 factor"
species:211586 "Shewanella oneidensis MR-1" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HSSP:P00579 HOGENOM:HOG000270272
KO:K03086 OMA:IEMNTDH TIGRFAMs:TIGR02393 RefSeq:NP_716906.1
ProteinModelPortal:Q8EHE1 SMR:Q8EHE1 GeneID:1169104
KEGG:son:SO_1284 PATRIC:23522218 ProtClustDB:CLSK906181
Uniprot:Q8EHE1
Length = 616
Score = 377 (137.8 bits), Expect = 1.8e-36, Sum P(2) = 1.8e-36
Identities = 80/244 (32%), Positives = 147/244 (60%)
Query: 256 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 315
A++++V +N+RLV+SIA++Y N G DL+Q G IGL++ ++KF+ +G+K STY WW
Sbjct: 378 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 437
Query: 316 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 374
IRQ ++R++ + +RT+R+P H+ E + L R ++ L+E G PS + +AE + M + K+
Sbjct: 438 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPSPEELAERMMMPEDKI 497
Query: 375 RNATEAIGKVFSLDREAFPSLNGLPGETH-HSYIADNRVENNPWHGVDDWALKDEVNKLI 433
R + + S++ G ++H +I D +E P +LK ++ +
Sbjct: 498 RKVLKIAKEPISMETPI-----GDDEDSHLGDFIEDTTLEL-PLDSATSESLKSATHE-V 550
Query: 434 IVTLGEREREIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKKM 492
+ L RE +++R+ +G+D T E++ K+ ++RER+RQ+ AL KL+H +R + +
Sbjct: 551 LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEIL 610
Query: 493 EAML 496
++ L
Sbjct: 611 KSFL 614
Score = 41 (19.5 bits), Expect = 1.8e-36, Sum P(2) = 1.8e-36
Identities = 8/28 (28%), Positives = 19/28 (67%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLS 223
Y++ + + ELLT + ++K+I+ G++
Sbjct: 101 YMREMGTVELLTREGEIVIAKRIEEGIN 128
>TIGR_CMR|ECH_0760 [details] [associations]
symbol:ECH_0760 "RNA polymerase sigma factor RpoD"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
RefSeq:YP_507558.1 ProteinModelPortal:Q2GG75 SMR:Q2GG75
STRING:Q2GG75 GeneID:3927201 KEGG:ech:ECH_0760 PATRIC:20576954
OMA:KISFICE ProtClustDB:CLSK749621
BioCyc:ECHA205920:GJNR-763-MONOMER Uniprot:Q2GG75
Length = 622
Score = 376 (137.4 bits), Expect = 3.4e-36, Sum P(2) = 3.4e-36
Identities = 83/242 (34%), Positives = 141/242 (58%)
Query: 256 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 315
A+++++ +N+RLV+SIA++Y N G DLVQ G IGL++ ++KFD +G+K STY WW
Sbjct: 385 AKQEMIKANLRLVVSIAKKYSNRGLQFLDLVQEGNIGLMKAVDKFDYKRGYKFSTYATWW 444
Query: 316 IRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 374
+RQ ++RA+ + +RT+R+P H+ E + I R + L E G P+++ ++ LN++ K+
Sbjct: 445 VRQAITRAIADQARTIRIPVHMIETVNKINRTLRQMLHEMGREPTLEELSARLNINVDKI 504
Query: 375 RNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWALKD--EVNKL 432
R + + SL+ P + T I D R P D L D E+
Sbjct: 505 RKVMKIVKDPVSLES---P-IGDDDSSTFGDCIEDKRAVK-P---EDAAVLADLREITTK 556
Query: 433 IIVTLGEREREIIRLYYGLDK--ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKK 490
++ TL +E I+R+ +G+ K + T E++ K ++RER+RQ+ AL KL+H +R +
Sbjct: 557 VLSTLTPKEERILRMRFGIGKGGKDHTLEEVGKLFNVTRERIRQIEAKALRKLRHPSRAR 616
Query: 491 KM 492
K+
Sbjct: 617 KL 618
Score = 40 (19.1 bits), Expect = 3.4e-36, Sum P(2) = 3.4e-36
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKT 220
++ Y+ + S ELL+ + ++KKIK+
Sbjct: 101 IRMYLCEMSSVELLSREGEIEIAKKIKS 128
>UNIPROTKB|P00579 [details] [associations]
symbol:rpoD species:83333 "Escherichia coli K-12"
[GO:0016987 "sigma factor activity" evidence=IEA;IDA] [GO:0009408
"response to heat" evidence=IEP] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000943 InterPro:IPR007127 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR007631
InterPro:IPR009042 InterPro:IPR012760 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0009408 EMBL:U28379 PDB:1TLH PDBsum:1TLH GO:GO:0016987
PDB:3IYD PDBsum:3IYD SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 EMBL:J01687 PDB:3T72 PDBsum:3T72 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 OMA:IEMNTDH TIGRFAMs:TIGR02393
PIR:A65095 RefSeq:NP_417539.1 RefSeq:YP_491259.1 PDB:1SIG PDB:2P7V
PDBsum:1SIG PDBsum:2P7V ProteinModelPortal:P00579 SMR:P00579
DIP:DIP-10773N IntAct:P00579 MINT:MINT-1220595 PaxDb:P00579
PRIDE:P00579 EnsemblBacteria:EBESCT00000001124
EnsemblBacteria:EBESCT00000001125 EnsemblBacteria:EBESCT00000001126
EnsemblBacteria:EBESCT00000001127 EnsemblBacteria:EBESCT00000001128
EnsemblBacteria:EBESCT00000001129 EnsemblBacteria:EBESCT00000001130
EnsemblBacteria:EBESCT00000017672 GeneID:12932074 GeneID:947567
KEGG:ecj:Y75_p2993 KEGG:eco:b3067 PATRIC:32121550 EchoBASE:EB0889
EcoGene:EG10896 ProtClustDB:PRK05658 BioCyc:EcoCyc:RPOD-MONOMER
BioCyc:ECOL316407:JW3039-MONOMER BioCyc:MetaCyc:RPOD-MONOMER
BindingDB:P00579 ChEMBL:CHEMBL5329 EvolutionaryTrace:P00579
Genevestigator:P00579 Uniprot:P00579
Length = 613
Score = 367 (134.2 bits), Expect = 7.5e-36, Sum P(2) = 7.5e-36
Identities = 78/244 (31%), Positives = 145/244 (59%)
Query: 256 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 315
A++++V +N+RLV+SIA++Y N G DL+Q G IGL++ ++KF+ +G+K STY WW
Sbjct: 375 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 434
Query: 316 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 374
IRQ ++R++ + +RT+R+P H+ E + L R ++ L+E G P+ + +AE + M + K+
Sbjct: 435 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKI 494
Query: 375 RNATEAIGKVFSLDREAFPSLNGLPGETH-HSYIADNRVENNPWHGVDDWALKDEVNKLI 433
R + + S++ G ++H +I D +E P +L+ + +
Sbjct: 495 RKVLKIAKEPISMETPI-----GDDEDSHLGDFIEDTTLEL-PLDSATTESLRAATHD-V 547
Query: 434 IVTLGEREREIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKKM 492
+ L RE +++R+ +G+D T E++ K+ ++RER+RQ+ AL KL+H +R + +
Sbjct: 548 LAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVL 607
Query: 493 EAML 496
+ L
Sbjct: 608 RSFL 611
Score = 46 (21.3 bits), Expect = 7.5e-36, Sum P(2) = 7.5e-36
Identities = 14/77 (18%), Positives = 40/77 (51%)
Query: 150 GVSARQRRLNSKKKILSQNKSILQQ-NGSKQLRSMISPEL--IQNRLKGYVKGVVSEELL 206
G+ + ++ +L++N + + Q+ S + E+ + ++ Y++ + + ELL
Sbjct: 52 GIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELL 111
Query: 207 THAEVVRLSKKIKTGLS 223
T + ++K+I+ G++
Sbjct: 112 TREGEIDIAKRIEDGIN 128
>TIGR_CMR|APH_0576 [details] [associations]
symbol:APH_0576 "RNA polymerase sigma factor RpoD"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393 OMA:KISFICE
ProtClustDB:CLSK749621 RefSeq:YP_505167.1 ProteinModelPortal:Q2GKD4
SMR:Q2GKD4 STRING:Q2GKD4 GeneID:3930981 KEGG:aph:APH_0576
PATRIC:20949818 BioCyc:APHA212042:GHPM-600-MONOMER Uniprot:Q2GKD4
Length = 627
Score = 389 (142.0 bits), Expect = 1.3e-35, P = 1.3e-35
Identities = 101/338 (29%), Positives = 180/338 (53%)
Query: 162 KKILSQNKSILQQNGSKQLRSMISPELIQNR--LKGYVKGVVSEELLTHAEVVRL-SKKI 218
++I + +KSI + S L S+ + + L Y ++E+ T E L K+
Sbjct: 294 QQIYALSKSIAAEESS--LISLAESYGVDRKSFLDAYNNNTIAEQAKTSFEWQNLLDKEG 351
Query: 219 KTGLSLDDH-KLRLKERLGSSLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDN 277
T L + + KL E S + ++Q + A+++++ +N+RLV+SIA++Y N
Sbjct: 352 DTLLEMQNRVKLLSGEDCPGSFKALVAKIQKHERTANRAKQEMIKANLRLVVSIAKKYSN 411
Query: 278 MGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHL 337
G DLVQ G IGL++ ++KFD +G+K STY WW+RQ ++RA+ + +RT+R+P H+
Sbjct: 412 RGLQFLDLVQEGNIGLMKAVDKFDYKRGYKFSTYATWWVRQAITRAIADQARTIRIPVHM 471
Query: 338 HERLGLI-RNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLN 396
E + I R + L E G P+++ ++ LN++ +K+R + + SL+ P +
Sbjct: 472 IETVNKINRTLRQMLHEIGREPTLEELSARLNINVEKIRKVMKIVKDPVSLES---P-IG 527
Query: 397 GLPGETHHSYIADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECL 456
T I D R P + L+ E+ ++ TL +E I+R+ +G+ K
Sbjct: 528 DDDSSTFGDCIEDKRAVK-PENAAVLADLR-EITTKVLSTLTPKEERILRMRFGIGKSGK 585
Query: 457 --TWEDISKRIGLSRERVRQVGLVALEKLKHAARKKKM 492
T E++ + ++RER+RQ+ AL KL+H +R +K+
Sbjct: 586 DHTLEEVGRLFNVTRERIRQIEAKALRKLRHPSRARKL 623
>TIGR_CMR|CPS_4334 [details] [associations]
symbol:CPS_4334 "RNA polymerase sigma-70 factor"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 OMA:IEMNTDH TIGRFAMs:TIGR02393
RefSeq:YP_270983.1 ProteinModelPortal:Q47W39 SMR:Q47W39
STRING:Q47W39 GeneID:3522880 KEGG:cps:CPS_4334 PATRIC:21471513
BioCyc:CPSY167879:GI48-4343-MONOMER Uniprot:Q47W39
Length = 616
Score = 370 (135.3 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
Identities = 81/246 (32%), Positives = 149/246 (60%)
Query: 256 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 315
A++++V +N+RLV+SIA++Y N G DL+Q G IGL++ ++KF+ +G+K STY WW
Sbjct: 377 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 436
Query: 316 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 374
IRQ ++R++ + +RT+R+P H+ E + L R ++ L+E G P+ + +AE + M + K+
Sbjct: 437 IRQAITRSIADQARTIRIPVHMIETINKLNRVSRQMLQEMGREPTPEELAERMVMPEDKI 496
Query: 375 RNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWA---LKDEVNK 431
R KV + +E S+ G+ S++ D + + VD LK ++
Sbjct: 497 R-------KVLKIAKEPI-SMETPIGDDEDSHLGDFIEDGSGELPVDSATSENLKGATHE 548
Query: 432 LIIVTLGEREREIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKK 490
++ L RE +++R+ +G+D T E++ K+ ++RER+RQ+ AL KL+H +R +
Sbjct: 549 -VLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSE 607
Query: 491 KMEAML 496
++++ L
Sbjct: 608 QLKSFL 613
Score = 40 (19.1 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
Identities = 8/27 (29%), Positives = 18/27 (66%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGL 222
Y++ + + ELLT + ++K+I+ G+
Sbjct: 101 YMREMGTVELLTRKGEIVIAKRIEEGI 127
>UNIPROTKB|Q9KUK1 [details] [associations]
symbol:VC_0517 "RNA polymerase sigma factor" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HSSP:P00579 KO:K03086
OMA:IEMNTDH TIGRFAMs:TIGR02393 ProtClustDB:PRK05658 PIR:F82312
RefSeq:NP_230168.1 ProteinModelPortal:Q9KUK1 SMR:Q9KUK1
DNASU:2615810 GeneID:2615810 KEGG:vch:VC0517 PATRIC:20080131
Uniprot:Q9KUK1
Length = 625
Score = 368 (134.6 bits), Expect = 1.8e-35, Sum P(2) = 1.8e-35
Identities = 79/244 (32%), Positives = 144/244 (59%)
Query: 256 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 315
A++++V +N+RLV+SIA++Y N G DL+Q G IGL++ ++KF+ +G+K STY WW
Sbjct: 387 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 446
Query: 316 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 374
IRQ ++R++ + +RT+R+P H+ E + L R ++ L+E G P + +AE + M + K+
Sbjct: 447 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPLPEELAERMQMPEDKI 506
Query: 375 RNATEAIGKVFSLDREAFPSLNGLPGETH-HSYIADNRVENNPWHGVDDWALKDEVNKLI 433
R + + S++ G ++H +I D +E P +LK + +
Sbjct: 507 RKVLKIAKEPISMETPI-----GDDEDSHLGDFIEDTTLEL-PLDSATATSLK-AATRDV 559
Query: 434 IVTLGEREREIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKKM 492
+ L RE +++R+ +G+D T E++ K+ ++RER+RQ+ AL KL+H +R + +
Sbjct: 560 LAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVL 619
Query: 493 EAML 496
+ L
Sbjct: 620 RSFL 623
Score = 42 (19.8 bits), Expect = 1.8e-35, Sum P(2) = 1.8e-35
Identities = 8/28 (28%), Positives = 19/28 (67%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLS 223
Y++ + + ELLT + ++K+I+ G++
Sbjct: 103 YMREMGTVELLTREGEIDIAKRIEDGIN 130
>TIGR_CMR|VC_0517 [details] [associations]
symbol:VC_0517 "RNA polymerase sigma factor RpoD"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HSSP:P00579 KO:K03086
OMA:IEMNTDH TIGRFAMs:TIGR02393 ProtClustDB:PRK05658 PIR:F82312
RefSeq:NP_230168.1 ProteinModelPortal:Q9KUK1 SMR:Q9KUK1
DNASU:2615810 GeneID:2615810 KEGG:vch:VC0517 PATRIC:20080131
Uniprot:Q9KUK1
Length = 625
Score = 368 (134.6 bits), Expect = 1.8e-35, Sum P(2) = 1.8e-35
Identities = 79/244 (32%), Positives = 144/244 (59%)
Query: 256 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 315
A++++V +N+RLV+SIA++Y N G DL+Q G IGL++ ++KF+ +G+K STY WW
Sbjct: 387 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 446
Query: 316 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 374
IRQ ++R++ + +RT+R+P H+ E + L R ++ L+E G P + +AE + M + K+
Sbjct: 447 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPLPEELAERMQMPEDKI 506
Query: 375 RNATEAIGKVFSLDREAFPSLNGLPGETH-HSYIADNRVENNPWHGVDDWALKDEVNKLI 433
R + + S++ G ++H +I D +E P +LK + +
Sbjct: 507 RKVLKIAKEPISMETPI-----GDDEDSHLGDFIEDTTLEL-PLDSATATSLK-AATRDV 559
Query: 434 IVTLGEREREIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKKM 492
+ L RE +++R+ +G+D T E++ K+ ++RER+RQ+ AL KL+H +R + +
Sbjct: 560 LAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVL 619
Query: 493 EAML 496
+ L
Sbjct: 620 RSFL 623
Score = 42 (19.8 bits), Expect = 1.8e-35, Sum P(2) = 1.8e-35
Identities = 8/28 (28%), Positives = 19/28 (67%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLS 223
Y++ + + ELLT + ++K+I+ G++
Sbjct: 103 YMREMGTVELLTREGEIDIAKRIEDGIN 130
>UNIPROTKB|Q84LK8 [details] [associations]
symbol:SIG6 "Sig6" species:39947 "Oryza sativa Japonica
Group" [GO:0009536 "plastid" evidence=RCA] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AP008214 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 HSSP:Q9EZJ8 InterPro:IPR016262 PIRSF:PIRSF000767
OMA:HIAKQYQ ProtClustDB:CLSN2688741 EMBL:AB096012 EMBL:AP005249
EMBL:AP005478 EMBL:AK099922 RefSeq:NP_001061343.1 UniGene:Os.27634
STRING:Q84LK8 EnsemblPlants:LOC_Os08g14450.1 GeneID:4345044
KEGG:osa:4345044 HOGENOM:HOG000070749 Uniprot:Q84LK8
Length = 572
Score = 359 (131.4 bits), Expect = 1.2e-34, Sum P(2) = 1.2e-34
Identities = 113/394 (28%), Positives = 189/394 (47%)
Query: 110 ALLLLQKSMLEKQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQ-- 167
ALL + +L Q S +V + +++ K V +RR SK++ +
Sbjct: 174 ALLAEETDILATQLKASQLYSVDSSKSNEELQSKGQVFVRSTRLLERR--SKRRYAPRAS 231
Query: 168 --NKSILQQNGSKQLRSMISPELIQ--NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLS 223
+ S N K+ +S +++ K +++ + E LT E L KI+ +
Sbjct: 232 IADVSCSADNSKKKEKSKKYGRVLEPDEPFKLFLRDRETTEFLTAKEERHLFSKIQILMK 291
Query: 224 LDDHKLRLKERLG---------SSLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQR 274
+++ +L+ + G ++ +S ELQS + REK+ SN RLV+ +A++
Sbjct: 292 IEEAHRKLEVQCGREPTLAEWAEAVGMSSKELQSSIRTGRRCREKMARSNFRLVIHVARK 351
Query: 275 YDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP 334
Y+ G D+ DLVQ G GL++ EKF+ SKG + TY YWWIRQ + +++ +NSR +RLP
Sbjct: 352 YEGYGLDIQDLVQDGCSGLMKTFEKFNPSKGCRFPTYAYWWIRQSIKKSIFKNSRLIRLP 411
Query: 335 NHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPS 394
++ L + A++ +G P+ +A ++ +K+ K S+ +
Sbjct: 412 ESVYALLRKVGKARMECIMEGEQPTNANVARRAGITIEKLAKLRAKTRKPRSMQDHVWSD 471
Query: 395 LNGLPGETHHSYIADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGL-DK 453
G T D VE P VD ++ +V + + L RE+EII +G+ D
Sbjct: 472 ----EGVTFQEITEDPNVEP-PDLSVDRMMMRQQVRDFLGI-LSPREKEIIEHRFGIHDG 525
Query: 454 ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAA 487
E T I GLS+ER+RQ+ ALEKLK +A
Sbjct: 526 EPKTLHVIGDMFGLSKERIRQLQNRALEKLKRSA 559
Score = 40 (19.1 bits), Expect = 1.2e-34, Sum P(2) = 1.2e-34
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 18 SSSFYYSDISEKFSYINDLGSANSQVGSTKNV 49
S+S S +S K S +DLG+A++ + TK+V
Sbjct: 144 STSVSSSPLSVKSSERSDLGTASAVL--TKDV 173
>TIGR_CMR|SO_3432 [details] [associations]
symbol:SO_3432 "RNA polymerase sigma factor RpoS"
species:211586 "Shewanella oneidensis MR-1" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006950
"response to stress" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:AE014299 GenomeReviews:AE014299_GR
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 KO:K03087 TIGRFAMs:TIGR02394 OMA:KWLDELN
RefSeq:NP_718985.1 HSSP:Q9WX78 ProteinModelPortal:Q8EBR8 SMR:Q8EBR8
GeneID:1171107 KEGG:son:SO_3432 PATRIC:23526552
ProtClustDB:CLSK907167 Uniprot:Q8EBR8
Length = 326
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 101/293 (34%), Positives = 167/293 (56%)
Query: 214 LSKKIKTGL--SLDDHKLRLKERLGSSLRISRPE----LQSILMECSLAREKLVMSNVRL 267
L ++++ L +LD +L L E +G S +S E + L C +R +++ SN+RL
Sbjct: 39 LEQQVQDDLQKNLDATQLYLGE-IGFSPLLSAEEEVYFSRKALKGCEKSRNRMIESNLRL 97
Query: 268 VMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVEN 327
V+ IA+RY+N G + DL++ G +GL+R +EKFD +GF+ STY WWIRQ + RA++
Sbjct: 98 VVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQ 157
Query: 328 SRTLRLPNHLHERLGL-IRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFS 386
+RT+RLP H+ + L + +R A+ ++ P+ + IAE L +S V + K+ S
Sbjct: 158 TRTIRLPIHVVKELNVYLRTARELAQKLDHEPTAEEIAEKLQVSSVDVSRMLKLNEKITS 217
Query: 387 LDREAFPSLNGLPGETHHSYIADNRVEN-NPWHGVDDWALKDEVNKLIIVTLGEREREII 445
+D P L G + +AD+ +N P + V D + + V K + L ++RE++
Sbjct: 218 VD---VP-LGGDNDKALLDVLADD--DNVGPDYKVQDEDISNSVVKWLN-ELNTKQREVL 270
Query: 446 RLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKH--AARKKKMEAM 495
+GL E T ED+ IGL+RERVRQ+ + AL++L+ A+ +EA+
Sbjct: 271 ARRFGLLGYEPSTLEDVGAEIGLTRERVRQIQVEALKRLRDLLGAQGLSVEAL 323
>TAIR|locus:2057996 [details] [associations]
symbol:SIGF "AT2G36990" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=TAS]
[GO:0009507 "chloroplast" evidence=IDA] [GO:0009536 "plastid"
evidence=IDA] [GO:0016987 "sigma factor activity" evidence=ISS;IDA]
[GO:0071483 "cellular response to blue light" evidence=IEP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA;IMP] [GO:0071482 "cellular response to light stimulus"
evidence=IMP] [GO:0090351 "seedling development" evidence=IMP]
[GO:0001053 "plastid sigma factor activity" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0009965 "leaf
morphogenesis" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0016117 "carotenoid biosynthetic
process" evidence=RCA] [GO:0019288 "isopentenyl diphosphate
biosynthetic process, mevalonate-independent pathway" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0034660 "ncRNA
metabolic process" evidence=RCA] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0009507 GO:GO:0045893
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AC006922
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 GO:GO:0090351
eggNOG:COG0568 HSSP:Q9EZJ8 GO:GO:0001053 InterPro:IPR016262
PIRSF:PIRSF000767 GO:GO:0071483 EMBL:AB029916 EMBL:AJ277389
EMBL:AY059768 EMBL:AY091182 EMBL:AJ250812 IPI:IPI00546728
PIR:B84787 PIR:T52653 RefSeq:NP_565856.1 UniGene:At.1453
ProteinModelPortal:Q9LD95 SMR:Q9LD95 IntAct:Q9LD95 STRING:Q9LD95
PaxDb:Q9LD95 PRIDE:Q9LD95 EnsemblPlants:AT2G36990.1 GeneID:818273
KEGG:ath:AT2G36990 GeneFarm:23 TAIR:At2g36990 InParanoid:Q9LD95
OMA:HIAKQYQ PhylomeDB:Q9LD95 ProtClustDB:CLSN2688741
Genevestigator:Q9LD95 Uniprot:Q9LD95
Length = 547
Score = 367 (134.2 bits), Expect = 1.4e-33, P = 1.4e-33
Identities = 96/303 (31%), Positives = 166/303 (54%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLG---------SSLRISR 243
L+ ++ G +++LLT E L I+ L L+ K +L+ + G ++ IS
Sbjct: 235 LQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISS 294
Query: 244 PELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSS 303
P L+S + +REKL+ +N+RLV+ IA++Y N G + DL+Q G +GL++ +EKF
Sbjct: 295 PVLKSDIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQ 354
Query: 304 KGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNA-KLRLEEKGVTPSVDR 362
G + +TY YWWIRQ + +++ +NSRT+RLP +++ LG + A K ++E PS +
Sbjct: 355 SGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEE 414
Query: 363 IAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDD 422
+A ++ +S +K+ S+ + + + T D+ +E P V
Sbjct: 415 LAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQD----TTFQEITPDSGIET-PTMSVGK 469
Query: 423 WALKDEVNKLIIVTLGEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALE 481
+++ V L+ V L +ER II+L +G+D + + +I + GLS+ERVRQ+ AL
Sbjct: 470 QLMRNHVRNLLNV-LSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALY 528
Query: 482 KLK 484
+LK
Sbjct: 529 RLK 531
>UNIPROTKB|P13445 [details] [associations]
symbol:rpoS "RNA polymerase, sigma S (sigma 38) factor"
species:83333 "Escherichia coli K-12" [GO:0006950 "response to
stress" evidence=IDA] [GO:0001123 "transcription initiation from
bacterial-type RNA polymerase promoter" evidence=IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;IDA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0016987 "sigma factor activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 HOGENOM:HOG000270273
EMBL:U29579 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 EMBL:L07869 EMBL:D17549 eggNOG:COG0568 KO:K03087
TIGRFAMs:TIGR02394 EMBL:X16400 EMBL:D13548 EMBL:Z14969 PIR:A65055
RefSeq:NP_417221.1 RefSeq:YP_490950.1 ProteinModelPortal:P13445
SMR:P13445 DIP:DIP-10777N IntAct:P13445 MINT:MINT-1228474
PRIDE:P13445 EnsemblBacteria:EBESCT00000000907
EnsemblBacteria:EBESCT00000000908 EnsemblBacteria:EBESCT00000000909
EnsemblBacteria:EBESCT00000017671 GeneID:12933280 GeneID:947210
KEGG:ecj:Y75_p2679 KEGG:eco:b2741 PATRIC:32120886 EchoBASE:EB0505
EcoGene:EG10510 OMA:AARQVMI ProtClustDB:PRK05657
BioCyc:EcoCyc:RPOS-MONOMER BioCyc:ECOL316407:JW5437-MONOMER
BioCyc:MetaCyc:RPOS-MONOMER Genevestigator:P13445 Uniprot:P13445
Length = 330
Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 83/231 (35%), Positives = 132/231 (57%)
Query: 256 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 315
+R +++ SN+RLV+ IA+RY N G + DL++ G +GL+R +EKFD +GF+ STY WW
Sbjct: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149
Query: 316 IRQGVSRALVENSRTLRLPNHLHERLGL-IRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 374
IRQ + RA++ +RT+RLP H+ + L + +R A+ + PS + IAE L+ V
Sbjct: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209
Query: 375 RNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWALKDEVNKLII 434
++ S+D P L G + +AD + EN P D +K + K +
Sbjct: 210 SRMLRLNERITSVDT---P-LGGDSEKALLDILADEK-ENGPEDTTQDDDMKQSIVKWLF 264
Query: 435 VTLGEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLK 484
L ++RE++ +GL E T ED+ + IGL+RERVRQ+ + L +L+
Sbjct: 265 -ELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314
>TIGR_CMR|CBU_1669 [details] [associations]
symbol:CBU_1669 "RNA polymerase sigma factor RpoS"
species:227377 "Coxiella burnetii RSA 493" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006950
"response to stress" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:AE016828 GenomeReviews:AE016828_GR
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 eggNOG:COG0568 HSSP:P00579 EMBL:AF244357
RefSeq:NP_820651.1 ProteinModelPortal:Q9KI19 SMR:Q9KI19
PRIDE:Q9KI19 GeneID:1209580 KEGG:cbu:CBU_1669 PATRIC:17932081
KO:K03087 OMA:HISAQAT ProtClustDB:CLSK914949
BioCyc:CBUR227377:GJ7S-1641-MONOMER TIGRFAMs:TIGR02394
Uniprot:Q9KI19
Length = 352
Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
Identities = 104/340 (30%), Positives = 180/340 (52%)
Query: 152 SARQRRLNSKKKILSQNKSILQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEV 211
+A++ + SK+KI K+ + K +++ LI + K K +E A
Sbjct: 13 AAKKIKKPSKRKI---KKTAKKSRPKKPIKAS-DHGLIFAKTK---KETTEKEDAELANA 65
Query: 212 VRLSKKIKTGLSLDDHKLRLKERLG-SSLRISRPELQ---SILMECSLAREKLVMSNVRL 267
+KK + S D ++ L+E LG L ++ EL+ + AR++++ +N+RL
Sbjct: 66 KAKTKKRRETRSSDPTQIYLRE-LGFQPLLNAKEELKIARRVHKGDPKARKQMIEANLRL 124
Query: 268 VMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVEN 327
V+ IA+ Y N G DL++ G +GLL +EKFD +GF+ STY WWIRQ + RA++
Sbjct: 125 VVKIARHYVNRGLPFLDLIEEGNLGLLTAVEKFDPERGFRFSTYATWWIRQTIERAIMNQ 184
Query: 328 SRTLRLPNHLHERLGL-IRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFS 386
SRT+RLP H+ + L + +R AK +E + + +A ++ +++R + S
Sbjct: 185 SRTVRLPIHVIKELNVYLRTAKKLTQEVDHEATPEDVAHLIDKPVQEIRRIMDLAPSATS 244
Query: 387 LDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIR 446
+D S +G + DN ++ P + + L+D + + + L ER RE++
Sbjct: 245 IDVPI--SEDGQKSLVD-TLADDNNID--PARLIQNVDLQDHIERWL-AQLDERHREVVI 298
Query: 447 LYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKH 485
L +GL + E T E + K +GL+RERVRQ+ + AL++L+H
Sbjct: 299 LRFGLHENEKGTLEAVGKAVGLTRERVRQIQIDALQQLRH 338
>TIGR_CMR|GSU_1525 [details] [associations]
symbol:GSU_1525 "RNA polymerase sigma-70 factor family"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR009042 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AE017180 GenomeReviews:AE017180_GR HOGENOM:HOG000270273
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
KO:K03086 OMA:IDTIEDT RefSeq:NP_952576.1 ProteinModelPortal:Q74CZ4
SMR:Q74CZ4 GeneID:2687268 KEGG:gsu:GSU1525 PATRIC:22025893
ProtClustDB:CLSK828404 BioCyc:GSUL243231:GH27-1508-MONOMER
Uniprot:Q74CZ4
Length = 328
Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
Identities = 97/293 (33%), Positives = 156/293 (53%)
Query: 202 SEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGSSLRISRPELQ---SILMECSLARE 258
+EE E + K I+ D KL L+E + L + E + I AR+
Sbjct: 35 AEEEEEPEEPAEVGKNIEQEHFDDAIKLYLREIQRTRLLTADEEKELAGRIAKGDKAARD 94
Query: 259 KLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQ 318
K++ SN+RLV+ IA+RY N G DL++ G +GL++ +E+F SK + STY WWIRQ
Sbjct: 95 KMIESNLRLVVKIAKRYINRGLPFLDLIEEGNMGLIKAVERFKLSKECRFSTYATWWIRQ 154
Query: 319 GVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNA 377
+ RALV SRT+RLP H+ + + +++ + ++ PSV +A + ++ VR
Sbjct: 155 SIERALVNQSRTIRLPVHVSDDINKMLKITRELVQRLNREPSVKEVATEMKVNSAYVRRL 214
Query: 378 TEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWALKDEVNKLIIVT- 436
+ K +S++R P GE ++ D +E+ V L +++NK IV+
Sbjct: 215 MVLLKKTYSIER---PM-----GENSDYFLIDT-IEDTST--VSPAVLLEDLNKYEIVSK 263
Query: 437 ----LGEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLK 484
L E E+ I+ L +GL DKE T + I + G++RER+RQ+ +LEKL+
Sbjct: 264 WFASLSENEQTILTLRFGLEDKEPQTLDTIGRSFGVTRERIRQIEAKSLEKLR 316
>TIGR_CMR|CPS_1079 [details] [associations]
symbol:CPS_1079 "RNA polymerase sigma factor RpoS"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006950
"response to stress" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:CP000083 GenomeReviews:CP000083_GR
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 eggNOG:COG0568 KO:K03087 TIGRFAMs:TIGR02394
OMA:KWLDELN RefSeq:YP_267823.1 ProteinModelPortal:Q487E2 SMR:Q487E2
STRING:Q487E2 GeneID:3519032 KEGG:cps:CPS_1079 PATRIC:21465429
BioCyc:CPSY167879:GI48-1161-MONOMER Uniprot:Q487E2
Length = 296
Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
Identities = 81/233 (34%), Positives = 134/233 (57%)
Query: 256 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 315
+R++++ SN+RLV+ IA+RY+N G + DL++ G +GL+R +EKFD +GF+ STY WW
Sbjct: 56 SRKRMIESNLRLVVKIARRYNNRGLPLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 115
Query: 316 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAEYLNMSQKKV 374
IRQ + RA++ +RT+RLP H+ + L + A L +K P+ + IA++L+ V
Sbjct: 116 IRQTIERAIMNQTRTIRLPIHVVKELNIYLRASRELIQKLDHEPTAEDIAQHLDRPVADV 175
Query: 375 RNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWALKDEVNKLI- 433
++ S+D P G + IAD + P D +D N +I
Sbjct: 176 NKMLRLNERIASVDT---P-FAGESDKALLDVIADEK-STGP---ESDLQSEDMSNNIIH 227
Query: 434 -IVTLGEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLK 484
+ L ++RE++ +GL E T E++ + IGL+RERVRQ+ + AL++L+
Sbjct: 228 WLNELNTKQREVLARRFGLLGYEASTLENVGREIGLTRERVRQIQVEALKRLR 280
>TIGR_CMR|VC_0534 [details] [associations]
symbol:VC_0534 "RNA polymerase sigma factor RpoS"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006950
"response to stress" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
KO:K03087 TIGRFAMs:TIGR02394 EMBL:AF000945 PIR:A82312
RefSeq:NP_230185.1 ProteinModelPortal:O51804 SMR:O51804
DNASU:2615203 GeneID:2615203 KEGG:vch:VC0534 PATRIC:20080172
OMA:KWLDELN ProtClustDB:CLSK874000 Uniprot:O51804
Length = 335
Score = 319 (117.4 bits), Expect = 1.6e-28, P = 1.6e-28
Identities = 88/280 (31%), Positives = 149/280 (53%)
Query: 223 SLDDHKLRLKERLGSSLRISRPEL---QSILMECSLAREKLVMSNVRLVMSIAQRYDNMG 279
SLD ++ L E S L + E+ + L AR++++ SN+RLV+ I++RY N G
Sbjct: 55 SLDATQMYLSEIGFSPLLTAEEEVLYARRALRGDEAARKRMIESNLRLVVKISRRYSNRG 114
Query: 280 ADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHE 339
+ DL++ G +GL+R +EKFD +GF+ STY WWIRQ + RAL+ +RT+RLP H+ +
Sbjct: 115 LALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVK 174
Query: 340 RLGL-IRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGL 398
L + +R A+ + P+ + IA L+ V ++ S+D P + G
Sbjct: 175 ELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDT---P-IGGD 230
Query: 399 PGETHHSYIADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGL-DKECLT 457
+ + D+ + + DD + +N L L +++E++ +GL E T
Sbjct: 231 GDKALLDILPDSHNADPEFSTQDDDIRESLLNWLD--ELNPKQKEVLARRFGLLGYEPST 288
Query: 458 WEDISKRIGLSRERVRQVGLVALEKLKHAARKK--KMEAM 495
E++ + I L+RERVRQ+ + L +L+ K+ MEA+
Sbjct: 289 LEEVGREINLTRERVRQIQVEGLRRLREILVKQGLNMEAL 328
>TIGR_CMR|NSE_0312 [details] [associations]
symbol:NSE_0312 "RNA polymerase sigma factor RpoD"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 RefSeq:YP_506202.1
ProteinModelPortal:Q2GE94 SMR:Q2GE94 STRING:Q2GE94 GeneID:3931706
KEGG:nse:NSE_0312 PATRIC:22680715 OMA:HIHETAN
ProtClustDB:CLSK2527840 BioCyc:NSEN222891:GHFU-338-MONOMER
Uniprot:Q2GE94
Length = 620
Score = 283 (104.7 bits), Expect = 5.1e-22, P = 5.1e-22
Identities = 101/358 (28%), Positives = 169/358 (47%)
Query: 159 NSKKKILSQNKSILQQNGSKQLRSMISPELIQNR--LKGYVK---GVVSEELLTHAEVVR 213
N++KK N+ IL++ K L + + + +KG V VV ELL +
Sbjct: 265 NTRKK----NELILEKK--KVLLTFLEEHGLDRTVLIKGKVHILDAVVLSELLKEHNICD 318
Query: 214 LSKKIKTGLSLDDHKLRLKERLG-SSLRISRPELQSILMECSLAREKLVMSNVRLVMSIA 272
++ LS +L E + S+ ++ + L + A+ ++V +N+RLV+SIA
Sbjct: 319 THFSLEEFLS-PIRELEKNEGMDYRSISFLTRKVATHLDNANAAKHRMVEANLRLVISIA 377
Query: 273 QRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLR 332
++Y N G DL+Q G IGL++ ++KFD +G K STY WW RQ ++RA+ + +R
Sbjct: 378 KKYTNRGMPFPDLIQEGNIGLMKAVDKFDHRRGHKFSTYATWWCRQAITRAIADCGSIVR 437
Query: 333 LPNHLHERLGLIRNAKLRLEE-KGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREA 391
P H+HE + + RL G P+V+ IA L +S KV+ + + SL+
Sbjct: 438 KPVHIHETANKVMRTRRRLYNLNGREPTVEEIANLLKISPDKVKKSLKVNQDPISLESPV 497
Query: 392 FPSLNGLPGETHHSYIADNRVENNPWHGVDDWALKDEVNKLI---IVTLGEREREIIRLY 448
N G + +I D + D L + K++ + L RE +I+R
Sbjct: 498 GDDSNS--G-SFGDFIEDKNAVSQV-----DVVLSKNLRKVLDEALAMLSPREEKILRYR 549
Query: 449 YGLDKECLTWEDI----SKRIGLSRER---VRQVGL---VALEKLKHAARK--KKMEA 494
+GL + ED S +I L+R + QVG+ V E+++ K +KM +
Sbjct: 550 FGLCNSVHSPEDEHYLKSLKIDLNRGTNLTLEQVGILYNVTRERIRQIESKSLRKMRS 607
>TAIR|locus:2084420 [details] [associations]
symbol:SIGC "AT3G53920" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS;IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0019685 "photosynthesis, dark reaction"
evidence=NAS] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IDA;TAS] [GO:0071482 "cellular response to light stimulus"
evidence=IEP] [GO:0001053 "plastid sigma factor activity"
evidence=IMP] [GO:2001141 "regulation of RNA biosynthetic process"
evidence=IMP] [GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 GO:GO:0009507 EMBL:CP002686 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AL132960 GO:GO:0003899 GO:GO:0071482 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568 HSSP:Q9EZJ8
GO:GO:0001053 InterPro:IPR016262 PIRSF:PIRSF000767 EMBL:D89994
EMBL:AB019944 EMBL:AB004822 EMBL:AF015544 EMBL:BT030362
EMBL:AY128331 IPI:IPI00530485 PIR:T45932 RefSeq:NP_190960.1
UniGene:At.21270 ProteinModelPortal:O24621 SMR:O24621 STRING:O24621
PRIDE:O24621 EnsemblPlants:AT3G53920.1 GeneID:824559
KEGG:ath:AT3G53920 GeneFarm:26 TAIR:At3g53920 InParanoid:O24621
KO:K03093 OMA:WIRKSMS PhylomeDB:O24621 ProtClustDB:CLSN2685061
Genevestigator:O24621 Uniprot:O24621
Length = 571
Score = 274 (101.5 bits), Expect = 4.3e-21, P = 4.3e-21
Identities = 77/284 (27%), Positives = 149/284 (52%)
Query: 204 ELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGSSLRISRPELQSILMECSLAREKLVMS 263
E+ T ++V ++I+T L + K+ ++ ++ L L R++LV S
Sbjct: 280 EMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELVKS 339
Query: 264 NVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRA 323
LV+ +A+ Y +G DL+Q G +G+L+G E+FD ++G+K STYV +WIR+ +S
Sbjct: 340 TRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSTM 399
Query: 324 LVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDR-IAEYLNMSQKKVRNATEAI 381
+ ++R + +P+ + + I+ A+ L+ G+ + D IA+ S KK+R A + +
Sbjct: 400 VSRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQCL 459
Query: 382 GKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWALKDEVNKLIIVTLGERE 441
V S+D++ + D +E+ P V + + +++ L+ L RE
Sbjct: 460 KVVGSIDKKVGDCFT----TKFLEFTPDTTMES-PEEAVMRQSARRDIHDLL-EGLEPRE 513
Query: 442 REIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLK 484
++++ L YGL D + E+I K + +S+E +R++ A+ KL+
Sbjct: 514 KQVMVLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAMAKLR 557
>TIGR_CMR|CBU_1909 [details] [associations]
symbol:CBU_1909 "RNA polymerase sigma-32 factor"
species:227377 "Coxiella burnetii RSA 493" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012759 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0009408 GenomeReviews:AE016828_GR
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270269 ProtClustDB:PRK06596 TIGRFAMs:TIGR02392
HSSP:Q9EZJ8 EMBL:AF120928 ProteinModelPortal:Q9LAQ0 PRIDE:Q9LAQ0
PATRIC:17932555 BioCyc:CBUR227377:GJ7S-1884-MONOMER Uniprot:Q9LAQ0
Length = 288
Score = 228 (85.3 bits), Expect = 3.8e-20, Sum P(2) = 3.8e-20
Identities = 68/240 (28%), Positives = 128/240 (53%)
Query: 256 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 315
A KLV+S++R V+ IA+ Y G ADL+Q G IGL++ +++FD G ++ ++ W
Sbjct: 51 AARKLVLSHLRFVVRIARGYSGYGLSQADLIQEGNIGLMKAVKRFDPQVGVRLVSFAVHW 110
Query: 316 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGVTPSVDR--IAEYLNMSQKK 373
IR + +++N R +++ +R L N + +++G + +AE LN+S K
Sbjct: 111 IRAEIHEFILKNWRIVKIATTKAQRK-LFFNLRKHAKKRGWFSDHEAFALAEELNVSTKD 169
Query: 374 VRNATEAIGKVF-SLDREAFPSLNGLP--GETHHSYIADNRVENNPWHGVD--DWALKDE 428
VR E + + D S +G P G H Y+ D R NP ++ +WA D+
Sbjct: 170 VRQMEERLNSYDEAFDGADEESDSGTPSWGAPAH-YLEDKRY--NPALQLERSNWA-DDQ 225
Query: 429 VNKL--IIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHA 486
++L + ++ +R R+I+ + +K+ T +++ + +S ER+RQ+ A++K++ A
Sbjct: 226 EHRLHNAMQSMDDRSRDILYQRWLSEKKS-TLHELAAQYAVSAERIRQLEKNAMQKIRTA 284
Score = 38 (18.4 bits), Expect = 3.8e-20, Sum P(2) = 3.8e-20
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 16 LLSSSFYYSDISEKFSYINDLGSANSQV 43
LLS+ + D++ KF NDL +A V
Sbjct: 30 LLSAEEEH-DLANKFRQSNDLEAARKLV 56
>UNIPROTKB|O32728 [details] [associations]
symbol:O32728 "RNA polymerase sigma factor" species:1422
"Geobacillus stearothermophilus" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014236 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
TIGRFAMs:TIGR02980 EMBL:L47360 PDB:1L0O PDBsum:1L0O
ProteinModelPortal:O32728 SMR:O32728 IntAct:O32728
EvolutionaryTrace:O32728 TIGRFAMs:TIGR02885 Uniprot:O32728
Length = 250
Score = 242 (90.2 bits), Expect = 7.5e-20, P = 7.5e-20
Identities = 76/230 (33%), Positives = 123/230 (53%)
Query: 256 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 315
AR++++ N+RLV S+ QR+ N G + DL Q G IGLL+ ++KFD S K STY
Sbjct: 31 ARDEIIEKNMRLVWSVVQRFLNRGYEADDLFQIGCIGLLKSVDKFDLSYDVKFSTYAVPM 90
Query: 316 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEE-KGVTPSVDRIAEYLNMSQKKV 374
I + R L ++ T+++ L E IR AK L + +G +P++ IA++L +S + V
Sbjct: 91 IIGEIQRFLRDDG-TVKVSRSLKEMGNKIRKAKDELSKTRGRSPTITEIADHLGISPEDV 149
Query: 375 RNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWALKDEVNKLII 434
A EA+ S+ + + +G P T IAD + W D ALK + +L
Sbjct: 150 VLAQEAVRLPTSIHETVYEN-DGDP-ITLLDQIAD--ADEASWF--DKIALKKAIEEL-- 201
Query: 435 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 484
ERER I+ L Y D+ T +++ R+G+S+ +V ++ L+ +K
Sbjct: 202 ---DERERLIVYLRYYRDR---TQSEVASRLGISQVQVSRLEKKILQHIK 245
>TIGR_CMR|SPO_1409 [details] [associations]
symbol:SPO_1409 "RNA polymerase sigma-32 factor"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISS] [GO:0009408 "response to
heat" evidence=ISS] [GO:0016987 "sigma factor activity"
evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012759
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00716 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003677 GO:GO:0008270 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009408 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270269 KO:K03089 ProtClustDB:PRK06596
TIGRFAMs:TIGR02392 RefSeq:YP_166650.1 ProteinModelPortal:Q5LTK5
GeneID:3195142 KEGG:sil:SPO1409 PATRIC:23376133 OMA:HESQEEM
Uniprot:Q5LTK5
Length = 298
Score = 240 (89.5 bits), Expect = 1.3e-19, P = 1.3e-19
Identities = 71/248 (28%), Positives = 126/248 (50%)
Query: 259 KLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQ 318
K+V S++RL IA Y G A+++ +GL++ +++FD KGF+++TY WWIR
Sbjct: 52 KMVTSHLRLAAKIAMGYRGYGLPQAEVISEANVGLMQAVKRFDPEKGFRLATYAMWWIRA 111
Query: 319 GVSRALVENSRTLRL-PNHLHERLGL-IRNAKLR---LEEKGVTP-SVDRIAEYLNMSQK 372
+ ++ + ++L ++L +R AK + LEE + P +V RIA L +S+
Sbjct: 112 AIQEYILRSWSLVKLGTTSAQKKLFFNLRKAKAKIGALEEGDLRPENVARIAHDLGVSED 171
Query: 373 KVRNATEAI-GKVFSLDREAFPSLNGLPGETHHSYIADNRVENNP-WHGVDDWALKDEVN 430
V + + G SL+ A G ++ D + + D+ + E+
Sbjct: 172 DVISMNRRMSGGDASLN--ATVGSEGEGTMQWQDWLEDEDADQAADYEARDELEARRELL 229
Query: 431 KLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKK 490
+ L ERE++++ LD + +T ED+S + +SRER+RQ+ + A EKL+ R+
Sbjct: 230 ASALDVLNEREKDVLTQRRLLD-QTVTLEDLSAQYNVSRERIRQIEVRAFEKLQKRMREL 288
Query: 491 KME-AMLV 497
E ML+
Sbjct: 289 AREKGMLI 296
>TIGR_CMR|BA_4294 [details] [associations]
symbol:BA_4294 "RNA polymerase sigma-F factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] [GO:0030436 "asexual
sporulation" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014236 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
KO:K03091 HOGENOM:HOG000270270 TIGRFAMs:TIGR02980
TIGRFAMs:TIGR02885 RefSeq:NP_846527.1 RefSeq:YP_020937.1
RefSeq:YP_030233.1 HSSP:O32728 ProteinModelPortal:Q81MF5 SMR:Q81MF5
DNASU:1088482 EnsemblBacteria:EBBACT00000012570
EnsemblBacteria:EBBACT00000017412 EnsemblBacteria:EBBACT00000022371
GeneID:1088482 GeneID:2818699 GeneID:2850307 KEGG:ban:BA_4294
KEGG:bar:GBAA_4294 KEGG:bat:BAS3983 OMA:IRRSQEG
ProtClustDB:PRK05572 BioCyc:BANT260799:GJAJ-4040-MONOMER
BioCyc:BANT261594:GJ7F-4178-MONOMER Uniprot:Q81MF5
Length = 252
Score = 234 (87.4 bits), Expect = 5.7e-19, P = 5.7e-19
Identities = 76/230 (33%), Positives = 123/230 (53%)
Query: 256 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 315
AR+ +V SN+RLV S+ QR+ N G + DL Q G IGLL+ ++KFD S K STY
Sbjct: 33 ARDTIVQSNMRLVWSVVQRFLNRGYEPDDLFQIGCIGLLKSVDKFDLSFDVKFSTYAVPM 92
Query: 316 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKV 374
I + R L ++ ++++ L E IR + L +E G P+++ +AE L ++ ++V
Sbjct: 93 IIGEIQRFLRDDG-SVKVSRSLKETGNKIRKMRDELSKEFGRAPTINEVAEALELTPEEV 151
Query: 375 RNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWALKDEVNKLII 434
A EA S+ + + +G P T IAD W D ALK+ + +L
Sbjct: 152 VLAQEASRAPSSIHETVYEN-DGDP-ITILDQIADQ--SETKWF--DKIALKEAIREL-- 203
Query: 435 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 484
ERER I+ L Y D+ T ++++RIG+S+ +V ++ L+++K
Sbjct: 204 ---DERERLIVYLRYYKDQ---TQSEVAERIGISQVQVSRLEKKILKQMK 247
>TIGR_CMR|GSU_0655 [details] [associations]
symbol:GSU_0655 "RNA polymerase sigma-32 factor"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012759 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0009408 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HOGENOM:HOG000270269 KO:K03089
TIGRFAMs:TIGR02392 RefSeq:NP_951712.1 ProteinModelPortal:Q74FF4
GeneID:2685542 KEGG:gsu:GSU0655 PATRIC:22024067 OMA:DIVSARW
ProtClustDB:CLSK827976 BioCyc:GSUL243231:GH27-665-MONOMER
Uniprot:Q74FF4
Length = 284
Score = 227 (85.0 bits), Expect = 3.3e-18, P = 3.3e-18
Identities = 69/233 (29%), Positives = 112/233 (48%)
Query: 256 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 315
A L+ SN+R V+ IA Y + G M DL+Q G +GL+ + KF+ KG ++ +Y WW
Sbjct: 45 AAHSLITSNLRFVVKIAAEYRSYGLKMLDLIQEGNVGLMMAVRKFNPYKGIRLISYAVWW 104
Query: 316 IRQGVSRALVENSRTLRL-PNHLHERLGL-IRNAKLRLEEKGVTPSVDRIAEYLNMSQKK 373
IR + ++ L++ ++L + AK ++ T ++ A L++ + +
Sbjct: 105 IRAYIQNHIISAWSLLKIGTTQAQKKLFFKLNQAKNAIKGLTGTDDIEATATSLHVKESE 164
Query: 374 VRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRV--ENNPWHGVDDWALKDEVNK 431
V + + F LD E NG G T +AD R E+ + LK +
Sbjct: 165 VLEMDQRMRGDFYLDAEI---KNG-DGLTILETLADERQNQEDTLAELQESELLKQHIAG 220
Query: 432 LIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 484
+ L E+ER I+ D LT ++I+ R +SRERVRQ+ AL K+K
Sbjct: 221 AL-GKLNEKERFIVEQRVTADTP-LTLQEIADRFSISRERVRQIEEAALRKIK 271
>TAIR|locus:2167413 [details] [associations]
symbol:SIGE "AT5G24120" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=ISS;TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0016987 "sigma factor activity"
evidence=ISS] [GO:0071483 "cellular response to blue light"
evidence=IEP] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0009507
"chloroplast" evidence=IDA] [GO:0001053 "plastid sigma factor
activity" evidence=IMP] [GO:0010207 "photosystem II assembly"
evidence=IMP] [GO:2001141 "regulation of RNA biosynthetic process"
evidence=IMP] [GO:0010114 "response to red light" evidence=IEP]
[GO:0010218 "response to far red light" evidence=IEP] [GO:0009637
"response to blue light" evidence=IGI] [GO:0009658 "chloroplast
organization" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0010264
"myo-inositol hexakisphosphate biosynthetic process" evidence=RCA]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 GO:GO:0005739 EMBL:CP002688 GO:GO:0009507
GO:GO:0045893 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0010218 GO:GO:0010114
GO:GO:0009658 EMBL:AB010696 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 GO:GO:0010207 eggNOG:COG0568 HSSP:Q9EZJ8
GO:GO:0001053 KO:K03093 EMBL:AB021120 EMBL:Y18550 EMBL:AK316888
EMBL:AY045660 EMBL:AK221445 IPI:IPI00519217 PIR:T51328
RefSeq:NP_197800.1 UniGene:At.5425 ProteinModelPortal:Q9ZNX9
SMR:Q9ZNX9 STRING:Q9ZNX9 PRIDE:Q9ZNX9 EnsemblPlants:AT5G24120.1
GeneID:832477 KEGG:ath:AT5G24120 GeneFarm:28 TAIR:At5g24120
InParanoid:Q9ZNX9 OMA:NKLIKHN PhylomeDB:Q9ZNX9
ProtClustDB:CLSN2686315 Genevestigator:Q9ZNX9 GO:GO:0071483
Uniprot:Q9ZNX9
Length = 517
Score = 246 (91.7 bits), Expect = 5.0e-18, P = 5.0e-18
Identities = 95/362 (26%), Positives = 170/362 (46%)
Query: 153 ARQRRLNSKKKILSQNKSILQ-QNGSKQLRSMISPELIQNRLKG--YVKGVVSEELLT-- 207
A +R + K + S +K + + Q +++ ++ N + + K + L +
Sbjct: 165 ALKRNVQEKPVVASVDKKVTKRQQEEEKIERLVRDYSASNDIVSLDWKKMKIPPVLSSTE 224
Query: 208 HAEVVRLSKKIKTGLSLDD--HKLRLKE----RLGSSLRISRPELQSILMECSLAREKLV 261
HA + +L + +K L + D K +E + + ++ E++ + AR KL+
Sbjct: 225 HAWLFKLMQPMKALLEVKDVLQKSLGREPREAEIAGEINMTAGEVKKKIEIGRAARNKLI 284
Query: 262 MSNVRLVMSIAQRYDNM---GADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQ 318
N+RLV+ + +Y + G DL Q G+ GL+ I++F+ + F++STY +WIR
Sbjct: 285 KHNLRLVLFVMNKYFHEFTNGPKFQDLCQAGMRGLITAIDRFEPKRKFRLSTYGLFWIRH 344
Query: 319 GVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVDRIAEYLNMSQKKVRNA 377
+ R++ ++ T R+P L I AK L E G P+ D + E L ++ ++ R
Sbjct: 345 AIIRSMTTSNFT-RVPFGLESVRVEIYKAKTELWFEMGRPPTEDEVVERLKITPERYREV 403
Query: 378 TEAIGKVFSLD-REAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWALKDEVNKLIIVT 436
A V SL+ + + + G T + N N+ + AL D ++ +
Sbjct: 404 LRAAKPVLSLNSKHSVTQEEFINGITDVDGVGAN---NSRQPALLRLALDD-----VLDS 455
Query: 437 LGEREREIIRLYYGLD-KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKKMEAM 495
L +E +IR YGLD K T +I+ + +SRE VR+ + AL KLKH AR +
Sbjct: 456 LKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHQARVDYLRQY 515
Query: 496 LV 497
+V
Sbjct: 516 IV 517
>TIGR_CMR|SO_4583 [details] [associations]
symbol:SO_4583 "RNA polymerase sigma-32 factor"
species:211586 "Shewanella oneidensis MR-1" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012759 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0009408 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HOGENOM:HOG000270269 KO:K03089
ProtClustDB:PRK06596 TIGRFAMs:TIGR02392 HSSP:Q9EZJ8 OMA:EIAYAER
RefSeq:NP_720099.1 ProteinModelPortal:Q8E8S8 GeneID:1172168
KEGG:son:SO_4583 PATRIC:23528833 Uniprot:Q8E8S8
Length = 285
Score = 224 (83.9 bits), Expect = 7.1e-18, P = 7.1e-18
Identities = 70/239 (29%), Positives = 121/239 (50%)
Query: 256 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 315
A ++L+MS++R V+ +A+ Y G ADL+Q G IGL++ +++FD G ++ ++ W
Sbjct: 52 AAKQLIMSHLRFVVHVAKGYAGYGLPQADLIQEGNIGLMKAVKRFDPDVGVRLVSFAVHW 111
Query: 316 IRQGVSRALVENSRTLRLPNHLHERLGL--IRNAKLRLEEKGVTPSVDRIAEYLNMSQKK 373
I+ + +++N R +++ +R IR AK RL V +AE L +S+
Sbjct: 112 IKAEIHEYVLKNWRIVKVATTKAQRKLFFNIRKAKTRLGWFS-DDEVTMVAENLGVSKAD 170
Query: 374 V---RNATEAIGKVFSL-----DREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWAL 425
V + A F L D F ++ L E H S +A+N +EN+ W L
Sbjct: 171 VTEMESRMAAQDPAFDLSSDNDDEHDFAPVHYL--EDHSSDLAEN-IENDNWESNAQGRL 227
Query: 426 KDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 484
+ TL ER + I+R + LD + T +++++ +S ER+RQ+ A+ KLK
Sbjct: 228 LSAIK-----TLDERSQHILRARW-LDDDKTTLQELAETYQVSAERIRQLEKNAMNKLK 280
>TIGR_CMR|CPS_0161 [details] [associations]
symbol:CPS_0161 "RNA polymerase sigma-32 factor"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012759 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0009408 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270269 KO:K03089 ProtClustDB:PRK06596
TIGRFAMs:TIGR02392 RefSeq:YP_266929.1 ProteinModelPortal:Q48AI4
STRING:Q48AI4 DNASU:3520829 GeneID:3520829 KEGG:cps:CPS_0161
PATRIC:21463737 OMA:EIAYAER BioCyc:CPSY167879:GI48-264-MONOMER
Uniprot:Q48AI4
Length = 285
Score = 222 (83.2 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 64/238 (26%), Positives = 125/238 (52%)
Query: 256 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 315
A ++L+MS++R V+ +A+ Y G ADLVQ G +GL++ +++F+ G ++ ++ W
Sbjct: 48 AAQELIMSHLRFVIHVAKGYSGYGLPHADLVQEGNVGLMKAVKRFNPEVGVRLVSFAVHW 107
Query: 316 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKG--VTPSVDRIAEYLNMSQKK 373
I+ + +++N R +++ +R L N + + G T V+ +AE L ++ K
Sbjct: 108 IKAEIHEFVLKNWRIVKVATTKAQRK-LFFNLRKNKKRLGWFSTEEVNTVAENLGVTTKD 166
Query: 374 VRNATEAIG---KVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWALKDEVN 430
V + + F L ++ +L G + Y+ D + + D+W + N
Sbjct: 167 VMEMESRMSSHDQAFELSKDDDDNL-GSSSFSPAQYLQDKQSDLAVEVENDNW--DNHAN 223
Query: 431 KLI---IVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKH 485
K + +VTL ER ++II+ + L ++ T ++++ + +S ERVRQ+ AL KLK+
Sbjct: 224 KRLSTALVTLDERSQDIIKTRW-LTEDKTTLQELANKYQISAERVRQLEKNALSKLKN 280
>UNIPROTKB|P50511 [details] [associations]
symbol:rpoH "RNA polymerase sigma-32 factor" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR009042 InterPro:IPR012759 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0008270
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0009408 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 eggNOG:COG0568 KO:K03089 ProtClustDB:PRK06596
TIGRFAMs:TIGR02392 EMBL:U44432 PIR:D82357 RefSeq:NP_229808.1
ProteinModelPortal:P50511 DNASU:2614865 GeneID:2614865
KEGG:vch:VC0150 PATRIC:20079338 OMA:LDQRERY Uniprot:P50511
Length = 286
Score = 217 (81.4 bits), Expect = 4.1e-17, P = 4.1e-17
Identities = 66/241 (27%), Positives = 119/241 (49%)
Query: 256 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 315
A + L++S++R V+ +A+ Y G MADLVQ G IGL++ +++F+ G ++ ++ W
Sbjct: 49 AAKGLILSHLRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHW 108
Query: 316 IRQGVSRALVENSRTLRLPNHLHERLGL--IRNAKLRLEEKGVTPSVDRIAEYLNMSQKK 373
I+ + ++ N R +++ +R +R +K RL V+ +A L + +
Sbjct: 109 IKAEIHEYVLRNWRIVKIATTKAQRKLFFNLRKSKKRLGWFN-NGEVETVARELGVEPAE 167
Query: 374 VRNATEAIG-KVFSLDREAFPSLNGL----PG---ETHHSYIADNRVENNPWHGVDDWAL 425
VR + + + + A NG+ P E HS +ADN +E W L
Sbjct: 168 VREMESRLAAQDAAFEMSAEDDENGMAYTAPVLYLEDKHSDLADN-LEAENWEAHTTQRL 226
Query: 426 KDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKH 485
+ + +L ER + I+R + D T +D+++ G+S ER+RQ+ A+ KLK
Sbjct: 227 S-----MALASLDERSQHIVRARWLDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLKE 281
Query: 486 A 486
A
Sbjct: 282 A 282
>TIGR_CMR|VC_0150 [details] [associations]
symbol:VC_0150 "RNA polymerase sigma-32 factor" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012759
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0008270 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009408 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
KO:K03089 ProtClustDB:PRK06596 TIGRFAMs:TIGR02392 EMBL:U44432
PIR:D82357 RefSeq:NP_229808.1 ProteinModelPortal:P50511
DNASU:2614865 GeneID:2614865 KEGG:vch:VC0150 PATRIC:20079338
OMA:LDQRERY Uniprot:P50511
Length = 286
Score = 217 (81.4 bits), Expect = 4.1e-17, P = 4.1e-17
Identities = 66/241 (27%), Positives = 119/241 (49%)
Query: 256 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 315
A + L++S++R V+ +A+ Y G MADLVQ G IGL++ +++F+ G ++ ++ W
Sbjct: 49 AAKGLILSHLRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHW 108
Query: 316 IRQGVSRALVENSRTLRLPNHLHERLGL--IRNAKLRLEEKGVTPSVDRIAEYLNMSQKK 373
I+ + ++ N R +++ +R +R +K RL V+ +A L + +
Sbjct: 109 IKAEIHEYVLRNWRIVKIATTKAQRKLFFNLRKSKKRLGWFN-NGEVETVARELGVEPAE 167
Query: 374 VRNATEAIG-KVFSLDREAFPSLNGL----PG---ETHHSYIADNRVENNPWHGVDDWAL 425
VR + + + + A NG+ P E HS +ADN +E W L
Sbjct: 168 VREMESRLAAQDAAFEMSAEDDENGMAYTAPVLYLEDKHSDLADN-LEAENWEAHTTQRL 226
Query: 426 KDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKH 485
+ + +L ER + I+R + D T +D+++ G+S ER+RQ+ A+ KLK
Sbjct: 227 S-----MALASLDERSQHIVRARWLDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLKE 281
Query: 486 A 486
A
Sbjct: 282 A 282
>UNIPROTKB|Q84JN3 [details] [associations]
symbol:SIG5 "Os05g0586600 protein" species:39947 "Oryza
sativa Japonica Group" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IDA] [GO:0009536 "plastid" evidence=IDA]
[GO:0016987 "sigma factor activity" evidence=IDA]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 GO:GO:0009536 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009637
GO:GO:0010218 GO:GO:0010114 EMBL:AP008211 GO:GO:0016987
GO:GO:0003899 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HSSP:Q9EZJ8 KO:K03093 OMA:NKLIKHN ProtClustDB:CLSN2686315
EMBL:AB096011 EMBL:AB096071 RefSeq:NP_001056463.1 UniGene:Os.57417
EnsemblPlants:LOC_Os05g50930.1 GeneID:4339759 KEGG:osa:4339759
Uniprot:Q84JN3
Length = 500
Score = 234 (87.4 bits), Expect = 1.0e-16, P = 1.0e-16
Identities = 79/264 (29%), Positives = 134/264 (50%)
Query: 234 RLGSSLRISRPELQSILMECSLAREKLVMSNVRLVM-SIAQRYDNMGAD--MADLVQGGL 290
+L ++ +S +++ L AR KL+ N+RLV+ +I + Y +M D D+ Q G
Sbjct: 241 QLAEAMNMSVLQMRRHLEVGRAARNKLIKHNLRLVLYTINKYYPDMSNDERFDDICQAGA 300
Query: 291 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLR 350
GL+ I++F+ +GF+ISTY +WIR + RA+ ++ T R P + I A+
Sbjct: 301 NGLITAIDRFEPKRGFRISTYALFWIRHSIVRAITLSNFT-RFPFAMESERQEIHRAREE 359
Query: 351 LE-EKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIAD 409
L E G P+ + + + + +S + R+ V + R + SL+ T I
Sbjct: 360 LAFELGRAPTEEEVMKKVGLSPARYRD-------VVRMTRPTY-SLHARNRVTQEELI-- 409
Query: 410 NRVENNPWHGVD----DWALKDEVNKLIIVTLGEREREIIRLYYGLD-KECLTWEDISKR 464
N V ++ GVD + L+ ++ L+ +L +E +IR +GLD + T +I+
Sbjct: 410 NEVTDDDAIGVDTSSHNTLLRLAIDDLLD-SLKPKESVVIRQRFGLDGRGKRTLSEIAGN 468
Query: 465 IGLSRERVRQVGLVALEKLKHAAR 488
+ +SRE VR+ L AL KLKH R
Sbjct: 469 LNISREMVRKYELKALMKLKHPTR 492
>TIGR_CMR|CHY_2055 [details] [associations]
symbol:CHY_2055 "RNA polymerase sigma-G factor"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS] [GO:0042173
"regulation of sporulation resulting in formation of a cellular
spore" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014212 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191 KO:K03091
HOGENOM:HOG000270270 TIGRFAMs:TIGR02980 RefSeq:YP_360874.1
ProteinModelPortal:Q3AAG0 STRING:Q3AAG0 GeneID:3726360
KEGG:chy:CHY_2055 PATRIC:21277191 OMA:QISDERN ProtClustDB:PRK08215
BioCyc:CHYD246194:GJCN-2054-MONOMER TIGRFAMs:TIGR02850
Uniprot:Q3AAG0
Length = 257
Score = 210 (79.0 bits), Expect = 2.4e-16, P = 2.4e-16
Identities = 75/233 (32%), Positives = 120/233 (51%)
Query: 256 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 315
AR+KL+ N+RLV+SI QR+ N G + DL Q G IGL++ I+ FD + K STY
Sbjct: 38 ARQKLISGNLRLVLSIIQRFTNRGEYVDDLFQVGCIGLIKAIDNFDLEQNVKFSTYAVPM 97
Query: 316 IRQGVSRALVENS--RTLR-LPNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQK 372
I + R L +N+ R R L + ++ L + N R + P+V IA+ L + Q+
Sbjct: 98 IIGEIRRYLRDNNPIRVSRSLRDVAYKALQVRDNLVGRFSRE---PTVSEIAQELKVPQE 154
Query: 373 KVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPW-HGVDDWALKDEVNK 431
+V A +AI SL + G P I D + ++ W G+ ALK+ + +
Sbjct: 155 EVVFALDAIQDPVSLFEPIYQD-GGDPIFVMDQ-IKDEKNTDHNWLQGI---ALKEALER 209
Query: 432 LIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 484
L ERER I++L + K T ++++ IG+S+ +V ++ AL L+
Sbjct: 210 L-----NERERLILKLRFYEGK---TQMEVAEEIGISQAQVSRLEKAALNHLR 254
>TIGR_CMR|BA_4042 [details] [associations]
symbol:BA_4042 "RNA polymerase sigma-G factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] [GO:0030436 "asexual
sporulation" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014212 InterPro:IPR014284 InterPro:IPR014322
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 EMBL:AE016879 EMBL:AE017334
GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
KO:K03091 HSSP:P00579 HOGENOM:HOG000270270 TIGRFAMs:TIGR02980
OMA:QISDERN ProtClustDB:PRK08215 TIGRFAMs:TIGR02850
RefSeq:NP_846282.1 RefSeq:YP_020684.2 ProteinModelPortal:Q81WD6
DNASU:1086511 EnsemblBacteria:EBBACT00000008607
EnsemblBacteria:EBBACT00000015378 GeneID:1086511 GeneID:2816830
KEGG:ban:BA_4042 KEGG:bar:GBAA_4042 PATRIC:18785676
BioCyc:BANT261594:GJ7F-3930-MONOMER Uniprot:Q81WD6
Length = 259
Score = 209 (78.6 bits), Expect = 3.1e-16, P = 3.1e-16
Identities = 72/240 (30%), Positives = 126/240 (52%)
Query: 245 ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSK 304
E+QS E S AREKLV N+RLV+S+ QR++N G + DL Q G IGL++ I+ FD +
Sbjct: 30 EMQS--GEIS-AREKLVNGNLRLVLSVIQRFNNRGEYVDDLFQVGCIGLMKSIDNFDLGQ 86
Query: 305 GFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRI 363
K STY I + R L +N+ +R+ L + + +L E P+ I
Sbjct: 87 NVKFSTYAVPMIIGEIRRYLRDNN-PIRVSRSLRDIAYKALQVREKLIAENSKEPTAMDI 145
Query: 364 AEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDW 423
A+ L ++ +++ A +AI SL + G P ++D + ++ W V++
Sbjct: 146 AKVLEVTHEEIVFALDAIQDPVSLFEPIYND-GGDPIFVMDQ-LSDEKQKDEQW--VEEL 201
Query: 424 ALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKL 483
ALK+ + +L +RE+ IIR + K T ++++ IG+S+ +V ++ A++++
Sbjct: 202 ALKEGMKRL-----NDREKMIIRKRFFQGK---TQMEVAEEIGISQAQVSRLEKSAIKQM 253
>TIGR_CMR|SPO_0406 [details] [associations]
symbol:SPO_0406 "RNA polymerase sigma-32 factor"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISS] [GO:0009408 "response to
heat" evidence=ISS] [GO:0016987 "sigma factor activity"
evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270269 KO:K03089 RefSeq:YP_165669.1
ProteinModelPortal:Q5LWD6 GeneID:3196326 KEGG:sil:SPO0406
PATRIC:23374073 OMA:GREWIEA ProtClustDB:PRK07500 Uniprot:Q5LWD6
Length = 292
Score = 211 (79.3 bits), Expect = 9.3e-16, P = 9.3e-16
Identities = 70/259 (27%), Positives = 121/259 (46%)
Query: 256 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 315
A +L+ + +RL +S+A ++ GA M DL+Q +GL++ +KFD +G + STY WW
Sbjct: 41 ALHRLITAYMRLAISMAAKFKRYGAPMNDLIQEAGLGLMKAADKFDPDRGVRFSTYAVWW 100
Query: 316 IRQGVSRALVENSRTLRLPNHLHERLGL--IRNAKLRLEEKGVTP--SVDR------IAE 365
I+ + ++ N +R + ++ +R + RLE + T ++DR IA
Sbjct: 101 IKASIQDYVMRNWSMVRTGSTSSQKSLFFNMRRVQARLEREAATDGLALDRHQLHQMIAS 160
Query: 366 YLNMSQKKVRNATEAI-GKVFSLDREAFPSLNGLPG----ETHHSYIADNRVENNPWHGV 420
+ + + V + G FSL+ G E A+ + +
Sbjct: 161 EIGVPLRDVEMMEGRLSGSDFSLNATQASDEEGREWIEALEDESEQAAELVAHRHDTEQL 220
Query: 421 DDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVAL 480
DW ++ + L ERER I+R L E T E + +GLS+ERVRQ+ A
Sbjct: 221 RDWLIE------AMQALNERERFIVR-ERKLRDEPRTLESLGDELGLSKERVRQLEAAAF 273
Query: 481 EKLKHA--ARKKKMEAMLV 497
K++ + AR ++++ LV
Sbjct: 274 AKMRKSLEARSREVQHFLV 292
>TIGR_CMR|APH_0759 [details] [associations]
symbol:APH_0759 "RNA polymerase sigma-32 factor"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:CP000235 GenomeReviews:CP000235_GR
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
eggNOG:COG0568 HOGENOM:HOG000270269 KO:K03089
ProtClustDB:CLSK749586 RefSeq:YP_505338.1 ProteinModelPortal:Q2GJW3
STRING:Q2GJW3 GeneID:3930206 KEGG:aph:APH_0759 PATRIC:20950212
OMA:ADTHRET BioCyc:APHA212042:GHPM-775-MONOMER Uniprot:Q2GJW3
Length = 289
Score = 208 (78.3 bits), Expect = 2.8e-15, P = 2.8e-15
Identities = 66/236 (27%), Positives = 124/236 (52%)
Query: 259 KLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQ 318
KLV S++RLV+ +A + + G + +L+ G IGL++ ++KF+ GF++STY WWI+
Sbjct: 50 KLVTSHLRLVVKVAMGFRSYGLPLMELIMEGNIGLMQAVKKFNPELGFRLSTYAIWWIKA 109
Query: 319 GVSRALVENSRTLRL-PNHLHERLGL-IRNAKLRLEEKGVTPS---VDRIAEYLNMSQKK 373
+ ++ + +R+ ++L +R K R+ + S + IAE S+K+
Sbjct: 110 SIKDYILRSWSCMRIGTTQAQKKLFFSLRKIKRRILGCSASASQSDIRAIAEECGTSEKE 169
Query: 374 VRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGV-----DDWALKDE 428
V E++ + FS +R+ SL+ + + D ++P V ++ +KD+
Sbjct: 170 V----ESMDRFFS-NRDI--SLSDKVCCESGTELQDLIPCSSPNQEVMYLSHEESVMKDQ 222
Query: 429 VNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 484
+ K + TL ER R+I L + T E +S+ G+S+ER+RQ+ L + K++
Sbjct: 223 MVKEALSTLDERHRDIFSRRK-LKEHPDTLETLSEEYGVSKERIRQIELQSFSKVR 277
>TIGR_CMR|CHY_1959 [details] [associations]
symbol:CHY_1959 "RNA polymerase sigma-F factor"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS] [GO:0042173
"regulation of sporulation resulting in formation of a cellular
spore" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014236 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191 KO:K03091
HOGENOM:HOG000270270 TIGRFAMs:TIGR02980 TIGRFAMs:TIGR02885
RefSeq:YP_360778.1 ProteinModelPortal:Q3AAQ6 STRING:Q3AAQ6
GeneID:3726621 KEGG:chy:CHY_1959 PATRIC:21277005 OMA:PRERYIL
ProtClustDB:CLSK941224 BioCyc:CHYD246194:GJCN-1958-MONOMER
Uniprot:Q3AAQ6
Length = 257
Score = 193 (73.0 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 71/252 (28%), Positives = 130/252 (51%)
Query: 240 RISRPELQSILMECS----LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLR 295
R+ E++ ++ + AREKL+ N++LV + +R+ + G ++ DL Q G IGL++
Sbjct: 15 RLGEQEIKELIEKAQKGDVAAREKLINCNLKLVFKVVERFLHRGYEVEDLFQIGTIGLIK 74
Query: 296 GIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGL-IRNAKLRLEEK 354
I+KFD + K STY I G R + + + +R+ E LG+ I K L K
Sbjct: 75 AIDKFDLKQQVKFSTYAVPMI-VGEIRRFLRDDQAIRISRSTKE-LGVKILKEKEALTVK 132
Query: 355 -GVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVE 413
G P++ + E L S++ + A EA + SL F +++ G+ Y+ D +++
Sbjct: 133 LGREPTIAELEETLGYSREAIVEALEAGQSLASL----FETVHQDDGDP--IYLLD-QIK 185
Query: 414 NNPWHGVDDWALKDEVN-KLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERV 472
G ++ L + ++ K ++ L RER I+ + +K T +I++ +G+S+ +V
Sbjct: 186 QE---GDEEQTLLENISIKEVLSKLEPRERYILINRFFKEK---TQMEIARTLGISQVQV 239
Query: 473 RQVGLVALEKLK 484
++ AL KLK
Sbjct: 240 SRLERQALLKLK 251
>UNIPROTKB|P0AGB3 [details] [associations]
symbol:rpoH species:83333 "Escherichia coli K-12"
[GO:0003677 "DNA binding" evidence=IEA;IDA] [GO:0016987 "sigma
factor activity" evidence=IEA;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;IMP] [GO:0009408
"response to heat" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0006950 "response
to stress" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012759 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0006355
EMBL:U00039 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0008270 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009408
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
EMBL:J05516 EMBL:M20668 EMBL:K02177 PIR:H65142 RefSeq:NP_417918.1
RefSeq:YP_491973.1 ProteinModelPortal:P0AGB3 SMR:P0AGB3
DIP:DIP-46203N IntAct:P0AGB3 PRIDE:P0AGB3 DNASU:947970
EnsemblBacteria:EBESCT00000004588 EnsemblBacteria:EBESCT00000004589
EnsemblBacteria:EBESCT00000004590 EnsemblBacteria:EBESCT00000004591
EnsemblBacteria:EBESCT00000004592 EnsemblBacteria:EBESCT00000004593
EnsemblBacteria:EBESCT00000018203 GeneID:12933503 GeneID:947970
KEGG:ecj:Y75_p3717 KEGG:eco:b3461 PATRIC:32122366 EchoBASE:EB0890
EcoGene:EG10897 eggNOG:COG0568 HOGENOM:HOG000270269 KO:K03089
OMA:LNNDEVH ProtClustDB:PRK06596 BioCyc:EcoCyc:RPOH-MONOMER
BioCyc:ECOL316407:JW3426-MONOMER BioCyc:MetaCyc:RPOH-MONOMER
Genevestigator:P0AGB3 TIGRFAMs:TIGR02392 Uniprot:P0AGB3
Length = 284
Score = 201 (75.8 bits), Expect = 2.5e-14, P = 2.5e-14
Identities = 65/239 (27%), Positives = 120/239 (50%)
Query: 256 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 315
A + L++S++R V+ IA+ Y G ADL+Q G IGL++ + +F+ G ++ ++ W
Sbjct: 49 AAKTLILSHLRFVVHIARNYAGYGLPQADLIQEGNIGLMKAVRRFNPEVGVRLVSFAVHW 108
Query: 316 IRQGVSRALVENSRTLRLPNHLHERLGL--IRNAKLRLEEKGVTPSVDRIAEYLNMSQKK 373
I+ + ++ N R +++ +R +R K RL V+ +A L ++ K
Sbjct: 109 IKAEIHEYVLRNWRIVKVATTKAQRKLFFNLRKTKQRLGWFN-QDEVEMVARELGVTSKD 167
Query: 374 VRNATEAIG-KVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDD--WALKDEVN 430
VR + + + D + + P Y+ D +N G++D W + N
Sbjct: 168 VREMESRMAAQDMTFDLSSDDDSDSQP-MAPVLYLQDK--SSNFADGIEDDNWE-EQAAN 223
Query: 431 KLIIVTLG--EREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHA 486
+L G ER ++IIR + LD++ T ++++ R G+S ERVRQ+ A++KL+ A
Sbjct: 224 RLTDAMQGLDERSQDIIRARW-LDEDNKSTLQELADRYGVSAERVRQLEKNAMKKLRAA 281
>TIGR_CMR|ECH_0655 [details] [associations]
symbol:ECH_0655 "RNA polymerase sigma-32 factor"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
GO:GO:0003677 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270269 KO:K03089 RefSeq:YP_507464.1
ProteinModelPortal:Q2GGG9 STRING:Q2GGG9 GeneID:3928045
KEGG:ech:ECH_0655 PATRIC:20576762 OMA:HHLVTSH
ProtClustDB:CLSK749586 BioCyc:ECHA205920:GJNR-657-MONOMER
Uniprot:Q2GGG9
Length = 297
Score = 192 (72.6 bits), Expect = 7.8e-13, P = 7.8e-13
Identities = 65/240 (27%), Positives = 126/240 (52%)
Query: 259 KLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQ 318
+LV S++RLV+ +A + N + +L+ G IGL++ ++KF+ + GF++STY WWI+
Sbjct: 50 RLVTSHLRLVVKVALSFKNYELPLIELIMEGNIGLMQAVKKFNPTLGFRLSTYAIWWIKA 109
Query: 319 GVSRALVENSRTLRLPNHLHER--LGLIRNAKLRLEE--KGVTPS-VDRIAEYLNMSQKK 373
+ ++++ +++ +R +R K +L + +T + IA + S+++
Sbjct: 110 FIKDYILKSWSCIKIGTTQAQRKLFFSLRKIKKKLFKYNHNITKEDIKLIANKCSTSEQE 169
Query: 374 VRNATEAIGKVFSLDREAFPSLNGL--PGETHHSYIADNRVENNPWHGVDDWALKDEVN- 430
V E + + F L R+ SLN L + + ++ + + D + L +E+N
Sbjct: 170 V----EQMNRYF-LYRDR--SLNELVFSNDNQNGVELQEIIKCDTPNQEDTYLLNEELNI 222
Query: 431 -KLIIV----TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKH 485
K +I TL ER R+I + L +E T + +S+ +S+ERVRQ+ + A K+K+
Sbjct: 223 KKALISQALSTLNERYRDIF-IRRRLIEEPDTLDKLSQEYNISKERVRQIEMHAFTKVKN 281
>UNIPROTKB|Q9K5J6 [details] [associations]
symbol:sigB "RNA polymerase sigma-B factor" species:1392
"Bacillus anthracis" [GO:0006352 "DNA-dependent transcription,
initiation" evidence=IMP] [GO:0016987 "sigma factor activity"
evidence=IMP] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 InterPro:IPR014322
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191 EMBL:AJ272497
RefSeq:NP_843493.1 RefSeq:YP_017620.1 RefSeq:YP_027202.1
ProteinModelPortal:Q9K5J6 DNASU:1088960
EnsemblBacteria:EBBACT00000009251 EnsemblBacteria:EBBACT00000017740
EnsemblBacteria:EBBACT00000023287 GeneID:1088960 GeneID:2814654
GeneID:2850205 KEGG:ban:BA_0992 KEGG:bar:GBAA_0992 KEGG:bat:BAS0928
HOGENOM:HOG000270270 KO:K03090 OMA:VEQGYEE ProtClustDB:PRK08583
BioCyc:BANT260799:GJAJ-1006-MONOMER
BioCyc:BANT261594:GJ7F-1051-MONOMER InterPro:IPR014288
TIGRFAMs:TIGR02980 TIGRFAMs:TIGR02941 Uniprot:Q9K5J6
Length = 257
Score = 177 (67.4 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 66/239 (27%), Positives = 110/239 (46%)
Query: 252 ECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTY 311
+C A+E+LV LV SIA RY G D++Q G++GLL I ++D S G +
Sbjct: 26 QCGEAQERLVDHYKNLVYSIAYRYSKGGPMHEDIIQVGMLGLLGAIRRYDYSIGNAFEPF 85
Query: 312 VYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAEYLNMS 370
I + + L + + + +P + + G I+ A L + +P + IA++L +S
Sbjct: 86 AIPTIVGEIKKYLRDKTWGIHVPRRIKDLGGKIKLAIEELTDHLQRSPKIIEIADHLGLS 145
Query: 371 QKKVRNATEAIG--KVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWALKDE 428
+++V +A +V SLD N G + + VE LKD
Sbjct: 146 EEEVLEIMDAKNNYRVSSLDDVVE---NASDGSSVARIESVGEVEQGYEQTERRLVLKDI 202
Query: 429 VNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAA 487
N L E E+ +I + +E L +D +R+G+S+ V ++ A+ KLK AA
Sbjct: 203 FN-----VLNETEKSVIHYIF---EENLNQKDTGERLGISQMHVSRIKRQAISKLKQAA 253
>TIGR_CMR|BA_0992 [details] [associations]
symbol:BA_0992 "RNA polymerase sigma-B factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=IMP] [GO:0016987
"sigma factor activity" evidence=IMP] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
eggNOG:COG1191 EMBL:AJ272497 RefSeq:NP_843493.1 RefSeq:YP_017620.1
RefSeq:YP_027202.1 ProteinModelPortal:Q9K5J6 DNASU:1088960
EnsemblBacteria:EBBACT00000009251 EnsemblBacteria:EBBACT00000017740
EnsemblBacteria:EBBACT00000023287 GeneID:1088960 GeneID:2814654
GeneID:2850205 KEGG:ban:BA_0992 KEGG:bar:GBAA_0992 KEGG:bat:BAS0928
HOGENOM:HOG000270270 KO:K03090 OMA:VEQGYEE ProtClustDB:PRK08583
BioCyc:BANT260799:GJAJ-1006-MONOMER
BioCyc:BANT261594:GJ7F-1051-MONOMER InterPro:IPR014288
TIGRFAMs:TIGR02980 TIGRFAMs:TIGR02941 Uniprot:Q9K5J6
Length = 257
Score = 177 (67.4 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 66/239 (27%), Positives = 110/239 (46%)
Query: 252 ECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTY 311
+C A+E+LV LV SIA RY G D++Q G++GLL I ++D S G +
Sbjct: 26 QCGEAQERLVDHYKNLVYSIAYRYSKGGPMHEDIIQVGMLGLLGAIRRYDYSIGNAFEPF 85
Query: 312 VYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAEYLNMS 370
I + + L + + + +P + + G I+ A L + +P + IA++L +S
Sbjct: 86 AIPTIVGEIKKYLRDKTWGIHVPRRIKDLGGKIKLAIEELTDHLQRSPKIIEIADHLGLS 145
Query: 371 QKKVRNATEAIG--KVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWALKDE 428
+++V +A +V SLD N G + + VE LKD
Sbjct: 146 EEEVLEIMDAKNNYRVSSLDDVVE---NASDGSSVARIESVGEVEQGYEQTERRLVLKDI 202
Query: 429 VNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAA 487
N L E E+ +I + +E L +D +R+G+S+ V ++ A+ KLK AA
Sbjct: 203 FN-----VLNETEKSVIHYIF---EENLNQKDTGERLGISQMHVSRIKRQAISKLKQAA 253
>TIGR_CMR|NSE_0341 [details] [associations]
symbol:NSE_0341 "RNA polymerase sigma-32 factor"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270269 KO:K03089 RefSeq:YP_506230.1 STRING:Q2GE66
GeneID:3931426 KEGG:nse:NSE_0341 PATRIC:22680769 OMA:AINEYVI
ProtClustDB:CLSK2528041 BioCyc:NSEN222891:GHFU-366-MONOMER
Uniprot:Q2GE66
Length = 288
Score = 176 (67.0 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 63/245 (25%), Positives = 119/245 (48%)
Query: 256 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 315
A ++LV + +RLV+ + R+ N G + DL G IGL++ I+ F+ + G I+TY WW
Sbjct: 46 AAQRLVEAYLRLVVKVTVRFRNYGFPLMDLASEGNIGLMKAIKNFNPTLGHGIATYAIWW 105
Query: 316 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGVTPSVD------RIAEYLNM 369
I+ ++ ++ + +++ +R L N + +L+ G +D RI+E L +
Sbjct: 106 IKAAINEYVIRSWSMVKIGTTAAQRR-LFFNLR-KLKNSGSVAGLDENQVVKRISEILAV 163
Query: 370 SQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIAD--NRVENNPWHGV---DDWA 424
S +N E + ++ + R+ SLN GE S + D E N + +
Sbjct: 164 S----KNDVEEMERILNA-RDV--SLNMQLGEDDSSEVHDLVPFPEANQEAVLLETQERQ 216
Query: 425 LKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 484
+K ++ + L R +EI + L T +++ ++ +S+ERVRQ+ A++K+
Sbjct: 217 MKSQLLYEAVEALEARHKEIF-VARSLSAVPRTLKELGEKFSISQERVRQIHARAMKKVT 275
Query: 485 HAARK 489
K
Sbjct: 276 EYVEK 280
>TIGR_CMR|CHY_2056 [details] [associations]
symbol:CHY_2056 "RNA polymerase sigma-E factor"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS] [GO:0042173
"regulation of sporulation resulting in formation of a cellular
spore" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014200 InterPro:IPR014284 InterPro:IPR016263
Pfam:PF04542 Pfam:PF04545 PIRSF:PIRSF000770 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030435 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
HOGENOM:HOG000270274 KO:K03091 ProtClustDB:PRK08301
TIGRFAMs:TIGR02835 RefSeq:YP_360875.1 ProteinModelPortal:Q3AAF9
STRING:Q3AAF9 GeneID:3727807 KEGG:chy:CHY_2056 PATRIC:21277193
OMA:ERQETTI BioCyc:CHYD246194:GJCN-2055-MONOMER Uniprot:Q3AAF9
Length = 237
Score = 130 (50.8 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 30/88 (34%), Positives = 50/88 (56%)
Query: 256 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 315
A+ L+ N+RLV+ IA++++N G ++ DLV G IGL++ + F+ K K++TY
Sbjct: 56 AKSTLIERNLRLVVYIARKFENTGVNIEDLVSIGTIGLIKAVNTFNPEKKIKLATYASRC 115
Query: 316 IRQGVSRALVENSRTLRLPNHLHERLGL 343
I + L NS+ +RL E L +
Sbjct: 116 IENEILMYLRRNSK-IRLEVSFDEPLNV 142
Score = 70 (29.7 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 19/65 (29%), Positives = 39/65 (60%)
Query: 425 LKDEVNKLIIVT----LGEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVA 479
++DEV K ++ L +RER+I+ L +GL D T ++++ +G+S+ + ++
Sbjct: 166 MEDEVEKKLLKVALSKLNQRERKIMELRFGLTDGYERTQKEVADLLGISQSYISRLEKKI 225
Query: 480 LEKLK 484
L++LK
Sbjct: 226 LKRLK 230
>UNIPROTKB|Q9KQD4 [details] [associations]
symbol:VC_2066 "RNA polymerase sigma factor for flagellar
operon FliA" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0006352 "DNA-dependent transcription, initiation"
evidence=ISS] [GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012845 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 GO:GO:0019861 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 GO:GO:0003899
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 KO:K02405
ProtClustDB:PRK06986 TIGRFAMs:TIGR02479 HSSP:Q9EZJ8 PIR:D82123
RefSeq:NP_231698.1 ProteinModelPortal:Q9KQD4 DNASU:2613446
GeneID:2613446 KEGG:vch:VC2066 PATRIC:20083166 OMA:DSFWGYG
Uniprot:Q9KQD4
Length = 244
Score = 156 (60.0 bits), Expect = 5.6e-09, P = 5.6e-09
Identities = 56/203 (27%), Positives = 104/203 (51%)
Query: 284 DLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLR-LPNHLHERLG 342
DL+Q G++GLL + +D SKG TY IR + A++++ R +P +H+
Sbjct: 46 DLIQAGMVGLLEAQKNYDGSKGASFETYA--GIR--IRGAMLDDIRRGDWVPRSVHKHNR 101
Query: 343 LIRNAKLRLE-EKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGE 401
I A LE E P+ +A++LNMS ++ + I + E G+ +
Sbjct: 102 EISQAIAVLEGELNRDPTDAEVAKFLNMSLEQYHSVLMDINCSRIVGIEDL----GVSDD 157
Query: 402 THHSYIADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDI 461
+ + +N+P+HGV + + + + + I +L ERE ++ LYY D+E L ++I
Sbjct: 158 AISPF--EEGEDNSPFHGVAEESFRKALVESI-KSLPEREALVLSLYY--DEE-LNLKEI 211
Query: 462 SKRIGLSRERVRQVGLVALEKLK 484
+ +G+S RV Q+ ++++L+
Sbjct: 212 GEVLGVSESRVSQILSQSMQRLR 234
>TIGR_CMR|VC_2066 [details] [associations]
symbol:VC_2066 "RNA polymerase sigma factor for flagellar
operon FliA" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012845 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 GO:GO:0019861 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 GO:GO:0003899
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 KO:K02405
ProtClustDB:PRK06986 TIGRFAMs:TIGR02479 HSSP:Q9EZJ8 PIR:D82123
RefSeq:NP_231698.1 ProteinModelPortal:Q9KQD4 DNASU:2613446
GeneID:2613446 KEGG:vch:VC2066 PATRIC:20083166 OMA:DSFWGYG
Uniprot:Q9KQD4
Length = 244
Score = 156 (60.0 bits), Expect = 5.6e-09, P = 5.6e-09
Identities = 56/203 (27%), Positives = 104/203 (51%)
Query: 284 DLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLR-LPNHLHERLG 342
DL+Q G++GLL + +D SKG TY IR + A++++ R +P +H+
Sbjct: 46 DLIQAGMVGLLEAQKNYDGSKGASFETYA--GIR--IRGAMLDDIRRGDWVPRSVHKHNR 101
Query: 343 LIRNAKLRLE-EKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGE 401
I A LE E P+ +A++LNMS ++ + I + E G+ +
Sbjct: 102 EISQAIAVLEGELNRDPTDAEVAKFLNMSLEQYHSVLMDINCSRIVGIEDL----GVSDD 157
Query: 402 THHSYIADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDI 461
+ + +N+P+HGV + + + + + I +L ERE ++ LYY D+E L ++I
Sbjct: 158 AISPF--EEGEDNSPFHGVAEESFRKALVESI-KSLPEREALVLSLYY--DEE-LNLKEI 211
Query: 462 SKRIGLSRERVRQVGLVALEKLK 484
+ +G+S RV Q+ ++++L+
Sbjct: 212 GEVLGVSESRVSQILSQSMQRLR 234
>TIGR_CMR|CPS_1519 [details] [associations]
symbol:CPS_1519 "motility sigma factor FliA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009296
"flagellum assembly" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR012845
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0016987 GO:GO:0003899
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
HOGENOM:HOG000270271 KO:K02405 ProtClustDB:PRK06986
TIGRFAMs:TIGR02479 RefSeq:YP_268261.1 ProteinModelPortal:Q485K4
STRING:Q485K4 GeneID:3522182 KEGG:cps:CPS_1519 PATRIC:21466245
OMA:YDEWRED BioCyc:CPSY167879:GI48-1600-MONOMER Uniprot:Q485K4
Length = 239
Score = 153 (58.9 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 59/204 (28%), Positives = 94/204 (46%)
Query: 284 DLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGL 343
DL+Q G+IGL FD++KG T+ IR + L E R P +H+ +
Sbjct: 43 DLIQSGMIGLFEAANNFDNTKGASFETFAGIRIRGAM---LDEIRRGDWTPRSVHKNSRM 99
Query: 344 IRNAKLRLEEK-GVTPSVDRIAEYLNMSQKKVRNATEAI--GKVFSLDREAFPSLNGLPG 400
I A +LE + G S +AE L++S K + GK+ +D P
Sbjct: 100 ISEAIKQLEAQLGRDVSDVEVAEKLDISLKDYHQILSEVSTGKILGIDDLGVNEDAIKPS 159
Query: 401 ETHHSYIADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWED 460
+ YI D+ P+ ++ A K + + I +L ERE ++ LYY D+E L +
Sbjct: 160 D---DYIGDD-----PYQSIERIAFKKGLTQCI-KSLPEREALVLSLYY--DEE-LNLRE 207
Query: 461 ISKRIGLSRERVRQVGLVALEKLK 484
I + + +S RV Q+ A+ +LK
Sbjct: 208 IGQVLDVSESRVSQIHSQAMHRLK 231
>TIGR_CMR|GSU_3053 [details] [associations]
symbol:GSU_3053 "RNA polymerase sigma factor for flagellar
operon" species:243231 "Geobacter sulfurreducens PCA" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012845 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00716 GO:GO:0019861
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0016987 GO:GO:0003899 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 HOGENOM:HOG000270271 KO:K02405 OMA:TYAITRI
TIGRFAMs:TIGR02479 RefSeq:NP_954095.1 ProteinModelPortal:Q748E9
GeneID:2686906 KEGG:gsu:GSU3053 PATRIC:22028957
ProtClustDB:CLSK829077 BioCyc:GSUL243231:GH27-2993-MONOMER
Uniprot:Q748E9
Length = 250
Score = 152 (58.6 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 64/243 (26%), Positives = 117/243 (48%)
Query: 257 REKLVMSNVRLVMSIAQRYDNM---GADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVY 313
R++L+++++ LV + R + D DL+ +IGL+ E+FD ++G + T+
Sbjct: 20 RDELIVNHLPLVKFLVGRIASQLPPHLDQEDLMSAAIIGLITAAERFDPTRGVQFKTFA- 78
Query: 314 WWIRQGVSRALVENSRTLR-LPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAEYLNMSQ 371
Q + +++ R+ L L ++ + + LE + G P+ + +A L MS
Sbjct: 79 ---EQRIRGTIIDELRSQDWLTRSLRDKFKKLEKEFVLLEHQLGRNPTSEEVATALKMSV 135
Query: 372 KKVRNATEAIGKV-F-SLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWALKDEV 429
+ E I + F SLD E++ +G P +AD +EN P + + D +
Sbjct: 136 DEYYQMLEEIHLLSFVSLD-ESWEDDDGSPFGLL-DILADTSIEN-PQSQLMARQMLDSL 192
Query: 430 NKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARK 489
+ I +L E+ER +I LYY E L ++I + LS R+ Q+ A+ +L+ A+
Sbjct: 193 TESI-ESLPEKERLVITLYY---YEELNLKEIGAVLELSESRISQLHSQAIVRLR--AKM 246
Query: 490 KKM 492
K M
Sbjct: 247 KNM 249
>TIGR_CMR|BA_4043 [details] [associations]
symbol:BA_4043 "RNA polymerase sigma-29 factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] [GO:0030436 "asexual
sporulation" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014200 InterPro:IPR014284 InterPro:IPR016263
Pfam:PF04542 Pfam:PF04545 PIRSF:PIRSF000770 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030435 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
HOGENOM:HOG000270274 KO:K03091 RefSeq:NP_846283.1
RefSeq:YP_020685.1 RefSeq:YP_030006.1 ProteinModelPortal:P62177
DNASU:1086623 EnsemblBacteria:EBBACT00000012093
EnsemblBacteria:EBBACT00000017203 EnsemblBacteria:EBBACT00000022798
GeneID:1086623 GeneID:2816772 GeneID:2850034 KEGG:ban:BA_4043
KEGG:bar:GBAA_4043 KEGG:bat:BAS3755 OMA:LIMELRF
ProtClustDB:PRK08301 BioCyc:BANT260799:GJAJ-3813-MONOMER
BioCyc:BANT261594:GJ7F-3931-MONOMER TIGRFAMs:TIGR02835
Uniprot:P62177
Length = 239
Score = 124 (48.7 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 33/115 (28%), Positives = 58/115 (50%)
Query: 218 IKTGLSLDD-HKLRLKERLGSSLRISRPE--LQSILMECSLAREKLVMSNVRLVMSIAQR 274
+K G+ D+ + + E L L E L + AR L+ N+RLV+ IA++
Sbjct: 17 LKLGIKTDEIYYIGGSEALPPPLTKEEEEVLLNKLPKGDQAARSLLIERNLRLVVYIARK 76
Query: 275 YDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSR 329
++N G ++ DL+ G IGL++ + F+ K K++TY I + L N++
Sbjct: 77 FENTGINIEDLISIGTIGLIKAVNTFNPEKKIKLATYASRCIENEILMHLRRNNK 131
Score = 60 (26.2 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 14/54 (25%), Positives = 32/54 (59%)
Query: 437 LGEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARK 489
L +RE++I+ L +GL E T +D++ +G+S+ + ++ +++L+ K
Sbjct: 184 LNDREKQIMELRFGLAGGEEKTQKDVADMLGISQSYISRLEKRIIKRLRKEFNK 237
>UNIPROTKB|Q7D5S2 [details] [associations]
symbol:sigF "Alternative RNA polymerase sigma factor SigF"
species:1773 "Mycobacterium tuberculosis" [GO:0005515 "protein
binding" evidence=IPI] [GO:0006629 "lipid metabolic process"
evidence=IMP] [GO:0006979 "response to oxidative stress"
evidence=IMP] [GO:0006995 "cellular response to nitrogen
starvation" evidence=IEP] [GO:0009409 "response to cold"
evidence=IMP] [GO:0016987 "sigma factor activity" evidence=IGI]
[GO:0034059 "response to anoxia" evidence=IMP] [GO:0043175 "RNA
polymerase core enzyme binding" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0046677 "response to antibiotic" evidence=IMP] [GO:0052572
"response to host immune response" evidence=IEP] [GO:0070417
"cellular response to cold" evidence=IEP] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 GO:GO:0045893 GO:GO:0006979 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003677
GO:GO:0006629 GO:GO:0046677 GO:GO:0052572 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0070417
GO:GO:0006995 GO:GO:0034059 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 GO:GO:0043175
HOGENOM:HOG000270270 KO:K03090 TIGRFAMs:TIGR02980 EMBL:AL123456
RefSeq:NP_217803.1 RefSeq:NP_337914.1 RefSeq:YP_006516763.1
SMR:Q7D5S2 IntAct:Q7D5S2 EnsemblBacteria:EBMYCT00000001724
EnsemblBacteria:EBMYCT00000068996 GeneID:13318109 GeneID:888727
GeneID:922492 KEGG:mtc:MT3385 KEGG:mtu:Rv3286c KEGG:mtv:RVBD_3286c
PATRIC:18129196 TubercuList:Rv3286c OMA:EMDRDEV
ProtClustDB:PRK07122 Uniprot:Q7D5S2
Length = 261
Score = 142 (55.0 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 60/231 (25%), Positives = 106/231 (45%)
Query: 257 REKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWI 316
R+K+V + L IA+R++ G DL+Q +GL+ +FD G ++ I
Sbjct: 40 RDKIVQRCLPLADHIARRFEGRGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTI 99
Query: 317 RQGVSRALVENSRTLRLPNHL---HERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKK 373
V R +NS ++++P L H RLG A L + G PS +A L M + +
Sbjct: 100 MGEVRRHFRDNSWSVKVPRRLKELHLRLGTA-TADLS-QRLGRAPSASELAAELGMDRAE 157
Query: 374 VRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWALKDEVNKLI 433
V A +L ++ G + I D + + G+D + EV + +
Sbjct: 158 VIEGLLAGSSYHTLSIDS-----GGGSDDDARAITDTLGDVDA--GLDQIENR-EVLRPL 209
Query: 434 IVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 484
+ L ERER ++ L + D +T I++R+G+S+ V ++ +L +L+
Sbjct: 210 LEALPERERTVLVLRF-FDS--MTQTQIAERVGISQMHVSRLLAKSLARLR 257
>TIGR_CMR|CHY_0617 [details] [associations]
symbol:CHY_0617 "RNA polymerase sigma-K factor"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS] [GO:0042173
"regulation of sporulation resulting in formation of a cellular
spore" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014209 InterPro:IPR014284 InterPro:IPR016263
Pfam:PF04542 Pfam:PF04545 PIRSF:PIRSF000770 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030435 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
HOGENOM:HOG000270274 KO:K03091 ProtClustDB:PRK05803
TIGRFAMs:TIGR02846 RefSeq:YP_359473.1 ProteinModelPortal:Q3AEG1
STRING:Q3AEG1 GeneID:3728237 KEGG:chy:CHY_0617 PATRIC:21274371
OMA:LERETEC BioCyc:CHYD246194:GJCN-617-MONOMER Uniprot:Q3AEG1
Length = 234
Score = 109 (43.4 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 256 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTY 311
AR+ L N+RLV I ++++ G DL+ G IGL++ I+ F KG K++TY
Sbjct: 50 ARDVLAERNLRLVAHIVKKFEGTGEATEDLISIGTIGLIKAIDTFRPDKGTKLATY 105
Score = 66 (28.3 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 18/58 (31%), Positives = 34/58 (58%)
Query: 437 LGEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKKKME 493
L RER++I +GL + T +I+K++G+SR V ++ A+ KL + + K++
Sbjct: 176 LTPRERKVIEERFGLSQTPRKTQREIAKKMGISRSYVSRIEKRAILKLLNCFPENKVK 233
>TIGR_CMR|BA_4566 [details] [associations]
symbol:BA_4566 "RNA polymerase sigma-27 factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] [GO:0030436 "asexual
sporulation" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014209 InterPro:IPR014284 InterPro:IPR016263
Pfam:PF04542 Pfam:PF04545 PIRSF:PIRSF000770 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030435 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
RefSeq:NP_846788.1 RefSeq:YP_021211.1 RefSeq:YP_030484.1
ProteinModelPortal:P62182 DNASU:1088335
EnsemblBacteria:EBBACT00000010179 EnsemblBacteria:EBBACT00000016313
EnsemblBacteria:EBBACT00000019367 GeneID:1088335 GeneID:2818972
GeneID:2852916 KEGG:ban:BA_4566 KEGG:bar:GBAA_4566 KEGG:bat:BAS4236
HOGENOM:HOG000270274 KO:K03091 OMA:WWIRESI ProtClustDB:PRK05803
BioCyc:BANT260799:GJAJ-4292-MONOMER
BioCyc:BANT261594:GJ7F-4441-MONOMER TIGRFAMs:TIGR02846
Uniprot:P62182
Length = 237
Score = 132 (51.5 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 43/150 (28%), Positives = 75/150 (50%)
Query: 256 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 315
AR L+ N+RLV I ++++N G D DL+ G IGL++ IE + + KG K++TY
Sbjct: 49 ARNLLIEHNLRLVAHIVKKFENTGEDAEDLISIGTIGLIKAIESYSAGKGTKLATYAARC 108
Query: 316 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAK-------LRLEEKGVTPSV------DR 362
I + L +T + + LH+ +G + L+ E + V + ++
Sbjct: 109 IENEILMHLRVLKKTKKDVS-LHDPIGQDKEGNEISLIDILKSESEDVIDMIQLSMELEK 167
Query: 363 IAEYLNMSQKKVRNATEAIGKVFSL--DRE 390
I EY+++ ++ + E I K F L D+E
Sbjct: 168 IKEYIDILDEREK---EVIVKRFGLGLDKE 194
>UNIPROTKB|Q48GG2 [details] [associations]
symbol:fliA "RNA polymerase sigma factor for flagellar
operon" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0006352 "DNA-dependent transcription, initiation"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0016987 "sigma factor activity"
evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR012845
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 GO:GO:0019861
GO:GO:0006355 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000058
GenomeReviews:CP000058_GR GO:GO:0016987 GO:GO:0003899
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
HOGENOM:HOG000270271 KO:K02405 ProtClustDB:PRK06986
TIGRFAMs:TIGR02479 RefSeq:YP_275521.1 ProteinModelPortal:Q48GG2
STRING:Q48GG2 GeneID:3558449 KEGG:psp:PSPPH_3363 PATRIC:19976132
OMA:FIERYSV Uniprot:Q48GG2
Length = 239
Score = 132 (51.5 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 57/195 (29%), Positives = 89/195 (45%)
Query: 284 DLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGL 343
DL+Q G+IGLL K+DS+KG TY IR + L E + P +H +
Sbjct: 40 DLIQAGMIGLLEVSTKYDSTKGASFETYAGIRIRGAM---LDEVRKGDWAPRSVHRNTRM 96
Query: 344 IRNAKLRLEEKGVTPSVDR-IAEYLNMSQKKVRNA-TEAIG-KVFSLDREAFPSLNGLPG 400
+ +A +E K + D +A L +S + +G ++FS D L
Sbjct: 97 VSDAIRAIEAKTGRDAKDHEVAAELQLSLDDYYGILNDTLGSRLFSFD----DLLQDGDH 152
Query: 401 ETHHSYIADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWED 460
E H A +E P ++D + + I L ERER ++ LYY D+E L ++
Sbjct: 153 EGLHEDGASGSLE--PSRDLEDERFQAALADAI-ANLPERERLVLALYY--DEE-LNLKE 206
Query: 461 ISKRIGLSRERVRQV 475
I + +G+S RV Q+
Sbjct: 207 IGEVLGVSESRVSQL 221
>UNIPROTKB|Q884V7 [details] [associations]
symbol:fliA "Motility sigma factor FliA" species:223283
"Pseudomonas syringae pv. tomato str. DC3000" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR012845 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AE016853
GenomeReviews:AE016853_GR GO:GO:0016987 GO:GO:0003899
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
HOGENOM:HOG000270271 KO:K02405 ProtClustDB:PRK06986
TIGRFAMs:TIGR02479 HSSP:P00579 OMA:FIERYSV RefSeq:NP_791802.1
ProteinModelPortal:Q884V7 GeneID:1183624 KEGG:pst:PSPTO_1979
PATRIC:19995230 BioCyc:PSYR223283:GJIX-2019-MONOMER Uniprot:Q884V7
Length = 246
Score = 132 (51.5 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 57/195 (29%), Positives = 89/195 (45%)
Query: 284 DLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGL 343
DL+Q G+IGLL K+DS+KG TY IR + L E + P +H +
Sbjct: 47 DLIQAGMIGLLEVSTKYDSTKGASFETYAGIRIRGAM---LDEVRKGDWAPRSVHRNTRM 103
Query: 344 IRNAKLRLEEKGVTPSVDR-IAEYLNMSQKKVRNA-TEAIG-KVFSLDREAFPSLNGLPG 400
+ +A +E K + D +A L +S + +G ++FS D L
Sbjct: 104 VSDAIRAIEAKTGRDAKDHEVAAELQLSLDDYYGILNDTLGSRLFSFD----DLLQDGDH 159
Query: 401 ETHHSYIADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWED 460
E H A +E P ++D + + I L ERER ++ LYY D+E L ++
Sbjct: 160 EGLHEDGASGSLE--PSRDLEDERFQAALADAI-ANLPERERLVLALYY--DEE-LNLKE 213
Query: 461 ISKRIGLSRERVRQV 475
I + +G+S RV Q+
Sbjct: 214 IGEVLGVSESRVSQL 228
>UNIPROTKB|O83707 [details] [associations]
symbol:TP_0709 "RNA polymerase sigma factor" species:243276
"Treponema pallidum subsp. pallidum str. Nichols" [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR012845 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
GO:GO:0003899 EMBL:AE000520 GenomeReviews:AE000520_GR
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 KO:K02405
OMA:TYAITRI TIGRFAMs:TIGR02479 HSSP:Q9EZJ8 PIR:A71290
RefSeq:NP_219146.1 ProteinModelPortal:O83707 IntAct:O83707
MINT:MINT-6480056 GeneID:2610969 KEGG:tpa:TP0709 PATRIC:20531509
ProtClustDB:PRK06288 Uniprot:O83707
Length = 262
Score = 130 (50.8 bits), Expect = 9.5e-06, P = 9.5e-06
Identities = 63/238 (26%), Positives = 107/238 (44%)
Query: 257 REKLVMSNVRLVMSIAQRY--DNMG-ADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVY 313
RE V+ LV +A + G + DLV G+ GL I+K+D K + +TY
Sbjct: 27 REYFVVQYAPLVKYVASKIAVGKPGNVEFDDLVSYGIFGLFDAIDKYDPEKNIRFNTYAV 86
Query: 314 WWIRQGVSRALVENSRTLR-LPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAEYLNMSQ 371
IR G A+ + R++ +P + ++ I A LE + G + IA LN+
Sbjct: 87 TRIR-G---AIFDELRSIDWVPRSVRQQTRQIEEAIADLEARLGRXATDTEIACALNIEL 142
Query: 372 KKVRNATEAIG--KVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWALKDEV 429
++ + V SL F G E H + D+ +E D ++E+
Sbjct: 143 EEYHQLLLKVSGTSVISLADSKF---GG--DERDHVSVGDS-IEAPASLNPDVIVEREEI 196
Query: 430 NKLI---IVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 484
++I I L +RE++++ LYY E +T ++I K + ++ R+ Q+ A KLK
Sbjct: 197 KRIIAEAIRELSQREQQVLILYY---YEEMTLKEIGKVLKVTESRISQIHTSANLKLK 251
>UNIPROTKB|P0AEM6 [details] [associations]
symbol:fliA "RNA polymerase, sigma 28 (sigma F) factor"
species:83333 "Escherichia coli K-12" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016987
"sigma factor activity" evidence=IEA] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR012845 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0016987 GO:GO:0003899 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 EMBL:L36677 EMBL:U18539
PIR:JC4346 RefSeq:NP_416432.3 RefSeq:YP_490179.1
ProteinModelPortal:P0AEM6 SMR:P0AEM6 DIP:DIP-47959N IntAct:P0AEM6
MINT:MINT-1250982 PRIDE:P0AEM6 EnsemblBacteria:EBESCT00000000857
EnsemblBacteria:EBESCT00000000858 EnsemblBacteria:EBESCT00000015311
GeneID:12930662 GeneID:948824 KEGG:ecj:Y75_p1893 KEGG:eco:b1922
PATRIC:32119179 EchoBASE:EB1330 EcoGene:EG11355 eggNOG:COG1191
HOGENOM:HOG000270271 KO:K02405 OMA:TYAITRI ProtClustDB:PRK06986
BioCyc:EcoCyc:EG11355-MONOMER BioCyc:ECOL316407:JW1907-MONOMER
BioCyc:MetaCyc:EG11355-MONOMER Genevestigator:P0AEM6
TIGRFAMs:TIGR02479 Uniprot:P0AEM6
Length = 239
Score = 126 (49.4 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 55/207 (26%), Positives = 96/207 (46%)
Query: 281 DMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHER 340
++ DL+Q G IGLL +E++D+ +G +TY IR + L SR +P +
Sbjct: 40 ELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDEL--RSRDW-VPRSVRRN 96
Query: 341 LGLIRNAKLRLEEK-GVTPSVDRIAEYLNMSQKKVRNATEAIG--KVFSLDREAFPSLNG 397
+ A +LE++ G + +AE L + R ++FS D + +G
Sbjct: 97 AREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDE--WREEHG 154
Query: 398 LPGETHHSYIADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLT 457
E + D+ NP + D L+ V + I TL ERE+ ++ LYY +E L
Sbjct: 155 DSIEL----VTDDHQRENPLQQLLDSNLRQRVMEAI-ETLPEREKLVLTLYY---QEELN 206
Query: 458 WEDISKRIGLSRERVRQVGLVALEKLK 484
++I + + RV Q+ A+++L+
Sbjct: 207 LKEIGAVLEVGESRVSQLHSQAIKRLR 233
>TIGR_CMR|CHY_1013 [details] [associations]
symbol:CHY_1013 "RNA polymerase sigma factor for flagellar
operon" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS] [GO:0030092
"regulation of flagellum assembly" evidence=ISS] InterPro:IPR000943
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR012845
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 GO:GO:0019861
GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
GO:GO:0003899 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
eggNOG:COG1191 HOGENOM:HOG000270271 KO:K02405 TIGRFAMs:TIGR02479
RefSeq:YP_359860.1 ProteinModelPortal:Q3ADC4 STRING:Q3ADC4
GeneID:3727796 KEGG:chy:CHY_1013 PATRIC:21275159 OMA:RTEDELW
BioCyc:CHYD246194:GJCN-1012-MONOMER Uniprot:Q3ADC4
Length = 254
Score = 126 (49.4 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 53/207 (25%), Positives = 99/207 (47%)
Query: 286 VQG-GLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLR-LPNHLHERLGL 343
++G G+IGL+ +E +D ++G K +Y IR A+++ R LP + +++
Sbjct: 55 IEGYGIIGLIEAVETYDQNRGVKFESYASLKIRA----AIIDELRKQNFLPRSVWDKIKK 110
Query: 344 IRNAK-LRLEEKGVTPSVDRIAEYLNMSQKKVRNATE--AIGKVFSLDREAFP--SLNGL 398
+ ++ + L G V+++AE L +S V A+ SLD P S++
Sbjct: 111 VTTSEEMLLNALGEEVPVEKVAEQLGVSVSDVLKIKTLIALKNHLSLDEIIDPEGSVDRF 170
Query: 399 PG-ETHHSYIADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLT 457
G Y +N+ V+ L++ + +L +RER I++L+Y E L+
Sbjct: 171 AGLADDEKYSPENKFLKR----VEIEELREALKRL-----SDRERLILQLFY---VEELS 218
Query: 458 WEDISKRIGLSRERVRQVGLVALEKLK 484
++I+ + +S RV Q+ AL KL+
Sbjct: 219 LKEIAAVLDISTSRVSQIASKALGKLR 245
>TIGR_CMR|BA_4115 [details] [associations]
symbol:BA_4115 "prophage LambdaBa02, RNA polymerase sigma-F
factor, putative" species:198094 "Bacillus anthracis str. Ames"
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0016989 "sigma factor antagonist activity"
evidence=ISS] [GO:0030436 "asexual sporulation" evidence=ISS]
InterPro:IPR001387 InterPro:IPR007627 InterPro:IPR010982
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF01381 Pfam:PF04542 EMBL:AE016879 EMBL:AE017334
GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR GO:GO:0043565
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.260.40 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
RefSeq:NP_846354.1 RefSeq:YP_020759.1 ProteinModelPortal:Q81W67
DNASU:1088309 EnsemblBacteria:EBBACT00000012091
EnsemblBacteria:EBBACT00000018334 GeneID:1088309 GeneID:2818224
KEGG:ban:BA_4115 KEGG:bar:GBAA_4115 PATRIC:18785820
HOGENOM:HOG000034523 OMA:ESTVENK ProtClustDB:CLSK918226
BioCyc:BANT261594:GJ7F-4002-MONOMER Uniprot:Q81W67
Length = 299
Score = 126 (49.4 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 46/168 (27%), Positives = 78/168 (46%)
Query: 281 DMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHER 340
+M DL+Q G++GL+ F + GFK +T+ I G R V +S+ +R+ N ++E
Sbjct: 37 NMDDLIQSGMLGLVTARRDFKTELGFKFTTFAVPRIL-GYIRKAVRDSQKIRITNEVYEI 95
Query: 341 LGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPG 400
G I KL EE V+ IA+ L +S + V+ A E + SL +N
Sbjct: 96 KGKISRMKLHDEE------VESIAKLLEVSVRDVKTAKEFNPRTISLQTPLNKEVNK-EK 148
Query: 401 ETHHSYIADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLY 448
T + + D + +DD +K + + TL +E+ + L+
Sbjct: 149 VTLENTLIDKKTSMT----LDD-VIKKMIITAFLSTLCSKEKFVWELH 191
>GENEDB_PFALCIPARUM|PFF1015w [details] [associations]
symbol:PFF1015w "hypothetical protein,
conserved" species:5833 "Plasmodium falciparum" [GO:0020011
"apicoplast" evidence=RCA] InterPro:IPR013324 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AL844505 GO:GO:0016987 SUPFAM:SSF88659 RefSeq:XP_966194.1
ProteinModelPortal:C6KT48 EnsemblProtists:PFF1015w:mRNA
GeneID:3885974 KEGG:pfa:PFF1015w EuPathDB:PlasmoDB:PF3D7_0621000
HOGENOM:HOG000281571 ProtClustDB:CLSZ2433708 Uniprot:C6KT48
Length = 844
Score = 130 (50.8 bits), Expect = 7.5e-05, P = 7.5e-05
Identities = 53/247 (21%), Positives = 116/247 (46%)
Query: 258 EKLVMSNVRLVMSIAQRYD-NMGADMA--DLVQGGLIGLLRGIEKFDSSK-GFK-ISTYV 312
+KL++ + L+ S +R + N ++++ D + L + G +K+D K G K ++ YV
Sbjct: 566 QKLLIYFIPLINSTVKRIEANFSSNLSEDDFLLVSLDAVKNGFKKYDVEKLGIKNLTKYV 625
Query: 313 YWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLR-LEEKGVTPSVDRIAEYLNMSQ 371
Y W + ++ + + H + I+ + LE+ P++ I+E LN+S+
Sbjct: 626 YIWAKNSTYNYYQKHKSFISISPHTYSEYNKIKKFEDSFLEKHNRKPNIKEISEGLNLSE 685
Query: 372 KKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWALKDEVNK 431
++V A + + ++ N E ++Y D V ++ H ++ D V K
Sbjct: 686 ERVEKALTSFVNIIDAEKPIVYHNNKSGNEEKNTY-KDLIVNSDDIHSFNEIMYNDIVIK 744
Query: 432 LI--IVTLGERERE---IIRLYYGL--DKECLTWEDISKRIGLSRERVRQVGLVALEKLK 484
+ + G +++ II + +GL K+ T E+I + + +S+++ ++ +L ++K
Sbjct: 745 ALRTFICKGLKKKINKLIIFMKFGLFLKKKIYTDEEICEILKISKKKFQKQFEDSLNEIK 804
Query: 485 HAARKKK 491
K K
Sbjct: 805 KYITKIK 811
>UNIPROTKB|C6KT48 [details] [associations]
symbol:PFF1015w "Putative uncharacterized protein"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR013324 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AL844505
GO:GO:0016987 SUPFAM:SSF88659 RefSeq:XP_966194.1
ProteinModelPortal:C6KT48 EnsemblProtists:PFF1015w:mRNA
GeneID:3885974 KEGG:pfa:PFF1015w EuPathDB:PlasmoDB:PF3D7_0621000
HOGENOM:HOG000281571 ProtClustDB:CLSZ2433708 Uniprot:C6KT48
Length = 844
Score = 130 (50.8 bits), Expect = 7.5e-05, P = 7.5e-05
Identities = 53/247 (21%), Positives = 116/247 (46%)
Query: 258 EKLVMSNVRLVMSIAQRYD-NMGADMA--DLVQGGLIGLLRGIEKFDSSK-GFK-ISTYV 312
+KL++ + L+ S +R + N ++++ D + L + G +K+D K G K ++ YV
Sbjct: 566 QKLLIYFIPLINSTVKRIEANFSSNLSEDDFLLVSLDAVKNGFKKYDVEKLGIKNLTKYV 625
Query: 313 YWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLR-LEEKGVTPSVDRIAEYLNMSQ 371
Y W + ++ + + H + I+ + LE+ P++ I+E LN+S+
Sbjct: 626 YIWAKNSTYNYYQKHKSFISISPHTYSEYNKIKKFEDSFLEKHNRKPNIKEISEGLNLSE 685
Query: 372 KKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWALKDEVNK 431
++V A + + ++ N E ++Y D V ++ H ++ D V K
Sbjct: 686 ERVEKALTSFVNIIDAEKPIVYHNNKSGNEEKNTY-KDLIVNSDDIHSFNEIMYNDIVIK 744
Query: 432 LI--IVTLGERERE---IIRLYYGL--DKECLTWEDISKRIGLSRERVRQVGLVALEKLK 484
+ + G +++ II + +GL K+ T E+I + + +S+++ ++ +L ++K
Sbjct: 745 ALRTFICKGLKKKINKLIIFMKFGLFLKKKIYTDEEICEILKISKKKFQKQFEDSLNEIK 804
Query: 485 HAARKKK 491
K K
Sbjct: 805 KYITKIK 811
>TIGR_CMR|SO_3210 [details] [associations]
symbol:SO_3210 "RNA polymerase sigma-27 factor"
species:211586 "Shewanella oneidensis MR-1" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009296
"flagellum assembly" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR012845
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 GO:GO:0019861
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0016987 GO:GO:0003899 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 HOGENOM:HOG000270271 KO:K02405
ProtClustDB:PRK06986 TIGRFAMs:TIGR02479 HSSP:P00579
RefSeq:NP_718765.1 ProteinModelPortal:Q8ECD3 GeneID:1170903
KEGG:son:SO_3210 PATRIC:23526104 OMA:PHESEIA Uniprot:Q8ECD3
Length = 237
Score = 113 (44.8 bits), Expect = 0.00063, P = 0.00063
Identities = 53/204 (25%), Positives = 89/204 (43%)
Query: 284 DLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGL 343
DL+Q G++GLL KFD KG K T+ IR + L E R +P +H
Sbjct: 43 DLLQAGMMGLLEASSKFDGGKGAKFETFAGIRIRGAM---LDEIRRGDWVPRSVHRNNRR 99
Query: 344 IRNAKLRLEEK-GVTPSVDRIAEYLNMSQKKVRNATE--AIGKVFSLDREAFPSLNGLPG 400
I A LE+ G IAE L+M+ + + ++GK+ ++ L G
Sbjct: 100 IAQAIDELEQVLGRDARDTEIAEKLDMTLDEYHHILNDVSVGKIIGIE-----DL----G 150
Query: 401 ETHHSYIADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWED 460
+ + V + + + + + + I + L ER+ ++ LYY E L ++
Sbjct: 151 VSEDILTTSDNVSDGTFEVLAETQFHSALVEAIKI-LPERDALVLSLYYD---EALNLKE 206
Query: 461 ISKRIGLSRERVRQVGLVALEKLK 484
I + +S RV Q+ A+ +LK
Sbjct: 207 IGAILEVSESRVSQILSQAMLRLK 230
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.131 0.367 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 499 479 0.00079 119 3 11 22 0.42 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 69
No. of states in DFA: 610 (65 KB)
Total size of DFA: 260 KB (2139 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 42.18u 0.09s 42.27t Elapsed: 00:00:02
Total cpu time: 42.19u 0.09s 42.28t Elapsed: 00:00:02
Start: Sat May 11 16:12:15 2013 End: Sat May 11 16:12:17 2013