BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010835
(499 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O24629|SIGA_ARATH RNA polymerase sigma factor sigA OS=Arabidopsis thaliana GN=SIGA
PE=1 SV=1
Length = 502
Score = 728 bits (1878), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/519 (71%), Positives = 426/519 (82%), Gaps = 38/519 (7%)
Query: 2 MATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNPS 61
MATAAVIGL+ GKRLLSSSFY+SD++EKF +ND S+ + STK+ + AKK+SNY+PS
Sbjct: 1 MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASNYSPS 60
Query: 62 FPSSNRQTQPIKALKEHVDTNFASTAEPWAEPPNSIEEESSE--------LDYSVEALLL 113
FPSSNR TQ KALKE VD AST +PW PN ++E E + +SVEA+LL
Sbjct: 61 FPSSNRHTQSAKALKESVDV--ASTEKPWL--PNGTDKELEEECYDDDDLISHSVEAILL 116
Query: 114 LQKSMLEKQWNLSFERTVLTDSPSKKT--HKKVPV-TCSGVSARQRRLNSKKKI-LSQNK 169
LQKSMLEK WNLSFE+ V ++ P K T KK+PV TCSG+SARQRR+ +KKK ++ K
Sbjct: 117 LQKSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTHVK 176
Query: 170 SILQQNGSKQLRSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKL 229
++ + KQ+R GYVKGV+SE++L+H EVVRLSKKIK+GL LDDHK
Sbjct: 177 AVSDVSSGKQVR-------------GYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKS 223
Query: 230 RLKERLGS---------SLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGA 280
RLK+RLG SL+ISR ELQ+ LMEC LAREKL MSNVRLVMSIAQRYDN+GA
Sbjct: 224 RLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGA 283
Query: 281 DMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHER 340
+M+DLVQGGLIGLLRGIEKFDSSKGF+ISTYVYWWIRQGVSRALV+NSRTLRLP HLHER
Sbjct: 284 EMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHER 343
Query: 341 LGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPG 400
LGLIRNAKLRL+EKG+TPS+DRIAE LNMSQKKVRNATEA+ KVFSLDR+AFPSLNGLPG
Sbjct: 344 LGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPG 403
Query: 401 ETHHSYIADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWED 460
ETHHSYIAD R+ENNPWHG DD ALK+EV+KLI TLGERE+EIIRLYYGLDKECLTWED
Sbjct: 404 ETHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWED 463
Query: 461 ISKRIGLSRERVRQVGLVALEKLKHAARKKKMEAMLVKH 499
ISKRIGLSRERVRQVGLVALEKLKHAARK+KMEAM++K+
Sbjct: 464 ISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 502
>sp|O33662|RPOD_STRMU RNA polymerase sigma factor RpoD OS=Streptococcus mutans serotype c
(strain ATCC 700610 / UA159) GN=rpoD PE=3 SV=1
Length = 371
Score = 165 bits (417), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 91/242 (37%), Positives = 151/242 (62%), Gaps = 14/242 (5%)
Query: 256 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 315
A+++L +N+RLV+SIA+RY G DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 133 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 192
Query: 316 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 374
IRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G P+ ++IAE ++M+ KV
Sbjct: 193 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 252
Query: 375 RNATEAIGKVFSLDREAFPSLNGLPGETHHSYIAD---NRVENNPWHGVDDWALKDEVNK 431
R ++ + +E SL GE S++ D + V NP L++++++
Sbjct: 253 R-------EILKIAQEPV-SLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDE 304
Query: 432 LIIVTLGEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKK 490
++ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+H +R K
Sbjct: 305 -VLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFDVTRERIRQIEAKALRKLRHPSRSK 363
Query: 491 KM 492
++
Sbjct: 364 QL 365
>sp|P27785|RPOD_STRAU RNA polymerase sigma factor RpoD OS=Streptomyces aureofaciens
GN=rpoD PE=3 SV=1
Length = 317
Score = 163 bits (413), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 107/308 (34%), Positives = 180/308 (58%), Gaps = 16/308 (5%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGSSLRISRPELQSILME 252
+ Y++ + LLT AE V L+++++ GL + KL L S L + +L +++
Sbjct: 21 FRQYLREIGRIPLLTAAEEVDLARRVEAGL-FAEEKLGGAADLDSQLAV---DLDRLVVM 76
Query: 253 CSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYV 312
+A+ +L+ SN+RLV+S+A+RY G M DLVQ G +GL+R +EKFD ++G+K STY
Sbjct: 77 GRMAKRRLIESNLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYA 136
Query: 313 YWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQ 371
WWIRQ +SRAL + +RT+R+P H+ E + ++R + L+E+G P+ + +A +L ++
Sbjct: 137 TWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTAEEVAVHLELTP 196
Query: 372 KKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWA--LKDEV 429
++V +V L +E SL+ GE + D + + V+ A L+ E
Sbjct: 197 ERVL-------EVLRLAQEPV-SLHAPVGEEDDVALGDLIEDGDAASPVESAAFFLRCEH 248
Query: 430 NKLIIVTLGEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAAR 488
+ ++ TLGERER++++L YGL D T E+I + G++RER+RQ+ L KL+ A
Sbjct: 249 LEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHAF 308
Query: 489 KKKMEAML 496
++ L
Sbjct: 309 ADQLRGYL 316
>sp|P0A4J0|RPOD_STRR6 RNA polymerase sigma factor RpoD OS=Streptococcus pneumoniae
(strain ATCC BAA-255 / R6) GN=rpoD PE=3 SV=1
Length = 369
Score = 162 bits (411), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 91/242 (37%), Positives = 149/242 (61%), Gaps = 14/242 (5%)
Query: 256 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 315
A+++L +N+RLV+SIA+RY G DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 316 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 374
IRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G P+ ++IAE ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 375 RNATEAIGKVFSLDREAFPSLNGLPGETHHSYIAD---NRVENNPWHGVDDWALKDEVNK 431
R ++ + +E SL GE S++ D + V NP L++++++
Sbjct: 251 R-------EILKIAQEPV-SLETPIGEEDDSHLGDFIEDEVIENPVDYTTRIVLREQLDE 302
Query: 432 LIIVTLGEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKK 490
I+ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+ +R K
Sbjct: 303 -ILDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRQPSRSK 361
Query: 491 KM 492
+
Sbjct: 362 PL 363
>sp|P0A4I9|RPOD_STRPN RNA polymerase sigma factor RpoD OS=Streptococcus pneumoniae
serotype 4 (strain ATCC BAA-334 / TIGR4) GN=rpoD PE=3
SV=1
Length = 369
Score = 162 bits (411), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 91/242 (37%), Positives = 149/242 (61%), Gaps = 14/242 (5%)
Query: 256 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 315
A+++L +N+RLV+SIA+RY G DL+Q G +GL++ ++KFD SKGFK STY WW
Sbjct: 131 AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWW 190
Query: 316 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 374
IRQ ++RA+ + +RT+R+P H+ E + L+R + L+E G P+ ++IAE ++M+ KV
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKV 250
Query: 375 RNATEAIGKVFSLDREAFPSLNGLPGETHHSYIAD---NRVENNPWHGVDDWALKDEVNK 431
R ++ + +E SL GE S++ D + V NP L++++++
Sbjct: 251 R-------EILKIAQEPV-SLETPIGEEDDSHLGDFIEDEVIENPVDYTTRIVLREQLDE 302
Query: 432 LIIVTLGEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAARKK 490
I+ TL +RE ++RL +GLD + T ED+ K ++RER+RQ+ AL KL+ +R K
Sbjct: 303 -ILDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRQPSRSK 361
Query: 491 KM 492
+
Sbjct: 362 PL 363
>sp|P26683|RPOD_NOSS1 RNA polymerase sigma factor RpoD OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=rpoD PE=3 SV=1
Length = 390
Score = 162 bits (409), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 109/314 (34%), Positives = 176/314 (56%), Gaps = 26/314 (8%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERL---------GSSLR 240
++ ++ Y++ + LL E + L++KI L L+ + RL E+L +++
Sbjct: 79 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRERLSEKLERDPRDSEWAEAVQ 138
Query: 241 ISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 300
+ P + L A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 139 LPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 198
Query: 301 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 359
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + KL +E G P+
Sbjct: 199 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPT 258
Query: 360 VDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFP-SLNGLPGETHHSYIADNRVENN--- 415
+ IA + M+ +K+R F P SL G+ S + D +E++
Sbjct: 259 EEEIATRMEMTIEKLR---------FIAKSAQLPISLETPIGKEEDSRLGDF-IESDGET 308
Query: 416 PWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQ 474
P V L++++ K ++ +L RER+++RL YGLD + T E+I + ++RER+RQ
Sbjct: 309 PEDQVSKNLLREDLEK-VLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQ 367
Query: 475 VGLVALEKLKHAAR 488
+ AL KL+H R
Sbjct: 368 IEAKALRKLRHPNR 381
>sp|P18182|HRDA_STRCO RNA polymerase principal sigma factor HrdA OS=Streptomyces
coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=hrdA
PE=3 SV=2
Length = 396
Score = 160 bits (404), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 106/308 (34%), Positives = 179/308 (58%), Gaps = 16/308 (5%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGSSLRISRPELQSILME 252
+ Y++ + LL+ AE V L+++++ GL + KLR G R++ + +++
Sbjct: 100 FRQYLREIGRIPLLSAAEEVDLARRVEAGL-FAEEKLRCSP--GLDDRLALDLDRLVVL- 155
Query: 253 CSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYV 312
LA+ +L+ +N+RLV+S+A+RY G M DLVQ G +GL+R +EKFD ++G+K STY
Sbjct: 156 GRLAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYA 215
Query: 313 YWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQ 371
WWIRQ +SRAL + +RT+R+P H+ E + ++R + L+E+G P+ +A +L++
Sbjct: 216 TWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGCEPTPQEVAAHLDL-- 273
Query: 372 KKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWA--LKDEV 429
A E +G+V L +E SL+ GE + D + + V+ A L +
Sbjct: 274 -----APERVGEVLRLAQEPV-SLHAPVGEEDDVALGDLIEDGDAASPVESAAFLLLRQH 327
Query: 430 NKLIIVTLGEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAAR 488
+ ++ TLGERER++++L YGL D T E+I + G++RER+RQ+ L KL+ A
Sbjct: 328 LEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRLFGVTRERIRQIESKTLSKLRDHAY 387
Query: 489 KKKMEAML 496
++ L
Sbjct: 388 ADQLRGYL 395
>sp|O22056|SIGB_ARATH RNA polymerase sigma factor sigB OS=Arabidopsis thaliana GN=SIGB
PE=2 SV=2
Length = 572
Score = 159 bits (401), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 110/338 (32%), Positives = 187/338 (55%), Gaps = 18/338 (5%)
Query: 172 LQQNGSKQLRSMISPELIQNRLKGYVKGVVSE-ELLTHAEVVRLSKKIKTGLSLDDHKLR 230
++ S + + +++ E+ N Y++ S +LLT E LS I+ L L+ +
Sbjct: 238 VKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQDLLKLERLQTE 297
Query: 231 LKERLG---------SSLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGAD 281
L ER G S+ + + L+ + +L ++K++ SN+RLV+SIA+ Y G +
Sbjct: 298 LTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISIAKNYQGAGMN 357
Query: 282 MADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERL 341
+ DLVQ G GL+RG EKFD++KGFK STY +WWI+Q V ++L + SR +RLP H+ E
Sbjct: 358 LQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEAT 417
Query: 342 GLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPG 400
++ A+ +L E G P + IAE +S K++ + SLD++ + N P
Sbjct: 418 YRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPS 477
Query: 401 ETHHSYIADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGL-DKECLTWE 459
E IAD + + ++ ++ +++K ++ +LG RE+++IR +G+ D T +
Sbjct: 478 EV----IADPEAVTSEDILIKEF-MRQDLDK-VLDSLGTREKQVIRWRFGMEDGRMKTLQ 531
Query: 460 DISKRIGLSRERVRQVGLVALEKLKHAARKKKMEAMLV 497
+I + +G+SRERVRQ+ A KLK+ R ++ LV
Sbjct: 532 EIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLV 569
>sp|Q59996|RPSC_SYNY3 Probable RNA polymerase sigma-C factor OS=Synechocystis sp. (strain
PCC 6803 / Kazusa) GN=sigC PE=3 SV=1
Length = 404
Score = 158 bits (400), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 152/244 (62%), Gaps = 15/244 (6%)
Query: 245 ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSK 304
EL++I + A+ ++ +N+RLV+S+A++Y N G ++ DL+Q G +GL R +EKFD +K
Sbjct: 154 ELENIEKQGITAKAHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTK 213
Query: 305 GFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRI 363
G++ STY YWWIRQG++RA+ SR +RLP H+ E+L I+ A+ ++ +EKG TP +D +
Sbjct: 214 GYRFSTYSYWWIRQGITRAIATQSRMIRLPVHITEKLNKIKRAQRKISQEKGHTPKIDEV 273
Query: 364 AEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDW 423
AE L M+ ++VR + + SL+ + G+ + + D +E + D+
Sbjct: 274 AEELGMTPEQVREVLTQVPRSVSLELKV--------GQDKDTELMD-LLETDTQSPEDEL 324
Query: 424 ---ALKDEVNKLIIVTLGEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVA 479
AL++++ + I++ L RE+E+I L +G D + +I + + LSRERVRQ+ A
Sbjct: 325 MREALQNDMQE-ILLDLTPREQEVIALRFGFQDGVAHSLSEIGRILNLSRERVRQIEAKA 383
Query: 480 LEKL 483
L+KL
Sbjct: 384 LQKL 387
>sp|O66381|RPOD_BACHD RNA polymerase sigma factor RpoD OS=Bacillus halodurans (strain
ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
GN=sigA PE=3 SV=2
Length = 372
Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/247 (37%), Positives = 151/247 (61%), Gaps = 16/247 (6%)
Query: 256 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 315
A+ +L +N+RLV+SIA+RY G DL+Q G +GL++ +EKFD +KGFK STY WW
Sbjct: 135 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYNKGFKFSTYATWW 194
Query: 316 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 374
IRQ ++RA+ + +RT+R+P H+ E + LIR + L++ G PS + +AE ++++ +KV
Sbjct: 195 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEVAEEMDLTPEKV 254
Query: 375 RNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWA----LKDEVN 430
R ++ + +E SL GE S++ D +E+ D A LK+++
Sbjct: 255 R-------EILKIAQEPV-SLETPIGEEDDSHLGDF-IEDQDALAPSDAAAYELLKEQLE 305
Query: 431 KLIIVTLGEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARK 489
++ TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R
Sbjct: 306 D-VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 364
Query: 490 KKMEAML 496
K+++ L
Sbjct: 365 KRLKDFL 371
>sp|Q8CP24|RPOD_STAES RNA polymerase sigma factor RpoD OS=Staphylococcus epidermidis
(strain ATCC 12228) GN=rpoD PE=3 SV=1
Length = 368
Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/248 (36%), Positives = 150/248 (60%), Gaps = 16/248 (6%)
Query: 255 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 314
+A+ +L +N+RLV+SIA+RY G DL+Q G +GL++ +EKFD SKGFK STY W
Sbjct: 130 IAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFSKGFKFSTYATW 189
Query: 315 WIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKK 373
WIRQ ++RA+ + +RT+R+P H+ E + LIR + L++ G P+ + I E +++ +K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPPEK 249
Query: 374 VRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWA----LKDEV 429
VR ++ + +E SL GE S++ D +E+ D A LK+++
Sbjct: 250 VR-------EILKIAQEPV-SLETPIGEEDDSHLGDF-IEDQEAQSPSDHAAYELLKEQL 300
Query: 430 NKLIIVTLGEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAAR 488
++ TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R
Sbjct: 301 ED-VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSR 359
Query: 489 KKKMEAML 496
K+++ +
Sbjct: 360 SKRLKDFM 367
>sp|Q5HNY7|RPOD_STAEQ RNA polymerase sigma factor RpoD OS=Staphylococcus epidermidis
(strain ATCC 35984 / RP62A) GN=rpoD PE=3 SV=1
Length = 368
Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/248 (36%), Positives = 150/248 (60%), Gaps = 16/248 (6%)
Query: 255 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 314
+A+ +L +N+RLV+SIA+RY G DL+Q G +GL++ +EKFD SKGFK STY W
Sbjct: 130 IAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFSKGFKFSTYATW 189
Query: 315 WIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKK 373
WIRQ ++RA+ + +RT+R+P H+ E + LIR + L++ G P+ + I E +++ +K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPPEK 249
Query: 374 VRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWA----LKDEV 429
VR ++ + +E SL GE S++ D +E+ D A LK+++
Sbjct: 250 VR-------EILKIAQEPV-SLETPIGEEDDSHLGDF-IEDQEAQSPSDHAAYELLKEQL 300
Query: 430 NKLIIVTLGEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAAR 488
++ TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R
Sbjct: 301 ED-VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSR 359
Query: 489 KKKMEAML 496
K+++ +
Sbjct: 360 SKRLKDFM 367
>sp|P52328|RPSD2_BACSP RNA polymerase sigma factor RpoD OS=Bacillus sp. GN=sigA PE=3 SV=1
Length = 377
Score = 156 bits (395), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 93/246 (37%), Positives = 148/246 (60%), Gaps = 14/246 (5%)
Query: 256 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 315
A+ +L +N+RLV+SIA+RY G DL+Q G +GL++ +EKFD +KGFK STY WW
Sbjct: 140 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDHNKGFKFSTYATWW 199
Query: 316 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 374
IRQ ++RA+ + +RT+R+P H+ E + LIR ++ L+E G P+ + IA + +S +KV
Sbjct: 200 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAAEMELSVEKV 259
Query: 375 RNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWA---LKDEVNK 431
R ++ + +E SL GE S++ D + D A LK+++
Sbjct: 260 R-------EIMKIAQEPV-SLETPIGEEDDSHLGDFIEDQEALTPADAAAYELLKEQLED 311
Query: 432 LIIVTLGEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKK 490
++ TL ERE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R K
Sbjct: 312 -VLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 370
Query: 491 KMEAML 496
+++ L
Sbjct: 371 RLKDFL 376
>sp|P38023|RPOD1_SYNE7 RNA polymerase sigma factor rpoD1 OS=Synechococcus elongatus
(strain PCC 7942) GN=rpoD1 PE=3 SV=2
Length = 399
Score = 156 bits (395), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 110/317 (34%), Positives = 171/317 (53%), Gaps = 32/317 (10%)
Query: 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLD---DHKLRLKERLGSSLR----IS 242
++ ++ Y++ + LL E + L+++I L+L+ D L +RL S +
Sbjct: 88 EDSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVD 147
Query: 243 RP--ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 300
P E + L A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKF
Sbjct: 148 SPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 207
Query: 301 DSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPS 359
D KG+K STY WWIRQ ++RA+ + SRT+RLP HL+E + I + KL +E G P+
Sbjct: 208 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPT 267
Query: 360 VDRIAEYLNMSQKKVRNATEAIGKVFSLD----REAFPSLNGL---PGETHHSYIADNRV 412
+ IA + M+ +K+R ++ SL+ +E L GET +A N +
Sbjct: 268 EEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDEVAKNLL 327
Query: 413 ENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECL-TWEDISKRIGLSRER 471
+ GV + TL RER+++RL YGLD + T E+I + ++RER
Sbjct: 328 RED-LEGV-------------LSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRER 373
Query: 472 VRQVGLVALEKLKHAAR 488
+RQ+ AL KL+H R
Sbjct: 374 IRQIEAKALRKLRHPNR 390
>sp|P58290|RPOD_LACLC RNA polymerase sigma factor RpoD (Fragment) OS=Lactococcus lactis
subsp. cremoris GN=rpoD PE=3 SV=1
Length = 364
Score = 156 bits (395), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 89/245 (36%), Positives = 149/245 (60%), Gaps = 14/245 (5%)
Query: 253 CSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYV 312
A++ L +N+RLV+SIA+RY G DL+Q G +GL++ ++KFD +KGFK STY
Sbjct: 125 AEFAKQMLAEANLRLVVSIAKRYSGRGMQFLDLIQEGNMGLMKAVDKFDQTKGFKFSTYA 184
Query: 313 YWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQ 371
WWIRQ ++RA+ + +RT+R+P H+ E + LIR + L+E G PS + I + L+M+
Sbjct: 185 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRNLLQELGRDPSPEEIGKELHMAP 244
Query: 372 KKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIAD---NRVENNPWHGVDDWALKDE 428
KVR +V + +E SL GE S++ D + V +P + L+++
Sbjct: 245 DKVR-------EVLKIAQEPV-SLETPIGEEDDSHLGDFIEDDVIESPVDYTNRILLREQ 296
Query: 429 VNKLIIVTLGEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAA 487
+++ ++ TL +RE ++R+ +GLD + T ED+ K+ ++RER+RQ+ A++KL+H
Sbjct: 297 LDE-VMDTLTDREENVLRMRFGLDDGRMHTLEDVGKQFKVTRERIRQIEAKAIKKLRHPR 355
Query: 488 RKKKM 492
R K +
Sbjct: 356 RSKPL 360
>sp|Q04506|RPOD_LACLA RNA polymerase sigma factor RpoD OS=Lactococcus lactis subsp.
lactis (strain IL1403) GN=rpoD PE=3 SV=2
Length = 386
Score = 156 bits (395), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 89/249 (35%), Positives = 150/249 (60%), Gaps = 14/249 (5%)
Query: 253 CSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYV 312
A++ L +N+RLV+SIA+RY G DL+Q G +GL++ ++KFD +KGFK STY
Sbjct: 147 AEFAKQMLAEANLRLVVSIAKRYSGRGMQFLDLIQEGNMGLMKAVDKFDHTKGFKFSTYA 206
Query: 313 YWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQ 371
WWIRQ ++RA+ + +RT+R+P H+ E + LIR + L+E G PS + I + L+M+
Sbjct: 207 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRNLLQELGRDPSPEEIGKELHMAP 266
Query: 372 KKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIAD---NRVENNPWHGVDDWALKDE 428
KVR +V + +E SL GE S++ D + V +P + L+++
Sbjct: 267 DKVR-------EVLKIAQEPV-SLETPIGEEDDSHLGDFIEDDVIESPVDYTNRILLREQ 318
Query: 429 VNKLIIVTLGEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAA 487
+++ ++ TL +RE ++R+ +GLD + T ED+ K+ ++RER+RQ+ A++KL+H
Sbjct: 319 LDE-VMDTLTDREENVLRMRFGLDDGRMHTLEDVGKQFKVTRERIRQIEAKAIKKLRHPR 377
Query: 488 RKKKMEAML 496
R K + +
Sbjct: 378 RSKPLRDFM 386
>sp|Q99TT5|RPOD_STAAN RNA polymerase sigma factor RpoD OS=Staphylococcus aureus (strain
N315) GN=rpoD PE=1 SV=1
Length = 368
Score = 156 bits (394), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 91/248 (36%), Positives = 150/248 (60%), Gaps = 16/248 (6%)
Query: 255 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 314
+A+ +L +N+RLV+SIA+RY G DL+Q G +GL++ +EKFD +KGFK STY W
Sbjct: 130 VAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATW 189
Query: 315 WIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKK 373
WIRQ ++RA+ + +RT+R+P H+ E + LIR + L++ G P+ + I E +++ +K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPAEK 249
Query: 374 VRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWA----LKDEV 429
VR +V + +E SL GE S++ D +E+ D A LK+++
Sbjct: 250 VR-------EVLKIAQEPV-SLETPIGEEDDSHLGDF-IEDQEAQSPSDHAAYELLKEQL 300
Query: 430 NKLIIVTLGEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAAR 488
++ TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R
Sbjct: 301 ED-VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSR 359
Query: 489 KKKMEAML 496
K+++ +
Sbjct: 360 SKRLKDFM 367
>sp|P52329|RPOD_ENTFA RNA polymerase sigma factor RpoD OS=Enterococcus faecalis (strain
ATCC 700802 / V583) GN=rpoD PE=3 SV=2
Length = 368
Score = 155 bits (393), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 102/313 (32%), Positives = 170/313 (54%), Gaps = 45/313 (14%)
Query: 189 IQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGSSLRISRPELQS 248
I + ++ Y+K + +LLT AE V L+ KI+ G D +
Sbjct: 95 INDPVRMYLKEIGRVQLLTAAEEVELALKIEEG----DQE-------------------- 130
Query: 249 ILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKI 308
A+++L +N+RLV+SIA+RY G DL+Q G +GL++ +EKFD KGFK
Sbjct: 131 -------AKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKF 183
Query: 309 STYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYL 367
STY WWIRQ ++RA+ + +RT+R+P H+ E + LIR + L++ G P+ + I +
Sbjct: 184 STYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEM 243
Query: 368 NMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIAD---NRVENNPWHGVDDWA 424
++ +KVR ++ + +E SL GE S++ D ++ +P
Sbjct: 244 DLPTEKVR-------EILKIAQEPV-SLETPIGEEDDSHLGDFIEDQDATSPAEHAAYEL 295
Query: 425 LKDEVNKLIIVTLGEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKL 483
LK+++ ++ TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL
Sbjct: 296 LKEQLED-VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 354
Query: 484 KHAARKKKMEAML 496
+H +R K+++ L
Sbjct: 355 RHPSRSKQLKDFL 367
>sp|P17531|RPOD_MYXXA RNA polymerase sigma factor RpoD OS=Myxococcus xanthus GN=rpoD PE=3
SV=1
Length = 708
Score = 155 bits (393), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 151/247 (61%), Gaps = 16/247 (6%)
Query: 256 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 315
A+ +LV +N+RLV+SIA++Y N G DL+Q G IGL++ ++KF+ +G+K STY WW
Sbjct: 470 AKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWW 529
Query: 316 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 374
IRQ ++RA+ + +RT+R+P H+ E + LIR ++ ++E G P+ + IAE + + KV
Sbjct: 530 IRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQEIGREPTPEEIAEKMELPLDKV 589
Query: 375 RNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVEN----NPWHGVDDWALKDEVN 430
R KV + +E SL GE S++ D +E+ +P V + L ++
Sbjct: 590 R-------KVLKIAKEPI-SLETPIGEEEDSHLGDF-IEDKSLVSPADAVINMNLAEQTR 640
Query: 431 KLIIVTLGEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARK 489
K ++ TL RE +++R+ +G+ +K T E++ + ++RER+RQ+ AL KL+H +R
Sbjct: 641 K-VLATLTPREEKVLRMRFGIGEKSDHTLEEVGQDFEVTRERIRQIEAKALRKLRHPSRS 699
Query: 490 KKMEAML 496
K++ + +
Sbjct: 700 KRLRSFV 706
>sp|P0A0I9|RPOD_STAAW RNA polymerase sigma factor RpoD OS=Staphylococcus aureus (strain
MW2) GN=rpoD PE=3 SV=1
Length = 368
Score = 155 bits (392), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 90/248 (36%), Positives = 150/248 (60%), Gaps = 16/248 (6%)
Query: 255 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 314
+A+ +L +N+RLV+SIA+RY G DL+Q G +GL++ +EKFD +KGFK STY W
Sbjct: 130 VAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATW 189
Query: 315 WIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKK 373
WIRQ ++RA+ + +RT+R+P H+ E + LIR + L++ G P+ + I E +++ +K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPAEK 249
Query: 374 VRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWA----LKDEV 429
VR ++ + +E SL GE S++ D +E+ D A LK+++
Sbjct: 250 VR-------EILKIAQEPV-SLETPIGEEDDSHLGDF-IEDQEAQSPSDHAAYELLKEQL 300
Query: 430 NKLIIVTLGEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAAR 488
++ TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R
Sbjct: 301 ED-VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSR 359
Query: 489 KKKMEAML 496
K+++ +
Sbjct: 360 SKRLKDFM 367
>sp|Q6G905|RPOD_STAAS RNA polymerase sigma factor RpoD OS=Staphylococcus aureus (strain
MSSA476) GN=rpoD PE=3 SV=1
Length = 368
Score = 155 bits (392), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 90/248 (36%), Positives = 150/248 (60%), Gaps = 16/248 (6%)
Query: 255 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 314
+A+ +L +N+RLV+SIA+RY G DL+Q G +GL++ +EKFD +KGFK STY W
Sbjct: 130 VAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATW 189
Query: 315 WIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKK 373
WIRQ ++RA+ + +RT+R+P H+ E + LIR + L++ G P+ + I E +++ +K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPAEK 249
Query: 374 VRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWA----LKDEV 429
VR ++ + +E SL GE S++ D +E+ D A LK+++
Sbjct: 250 VR-------EILKIAQEPV-SLETPIGEEDDSHLGDF-IEDQEAQSPSDHAAYELLKEQL 300
Query: 430 NKLIIVTLGEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAAR 488
++ TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R
Sbjct: 301 ED-VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSR 359
Query: 489 KKKMEAML 496
K+++ +
Sbjct: 360 SKRLKDFM 367
>sp|Q6GGD8|RPOD_STAAR RNA polymerase sigma factor RpoD OS=Staphylococcus aureus (strain
MRSA252) GN=rpoD PE=3 SV=1
Length = 368
Score = 155 bits (392), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 90/248 (36%), Positives = 150/248 (60%), Gaps = 16/248 (6%)
Query: 255 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 314
+A+ +L +N+RLV+SIA+RY G DL+Q G +GL++ +EKFD +KGFK STY W
Sbjct: 130 VAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATW 189
Query: 315 WIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKK 373
WIRQ ++RA+ + +RT+R+P H+ E + LIR + L++ G P+ + I E +++ +K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPAEK 249
Query: 374 VRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWA----LKDEV 429
VR ++ + +E SL GE S++ D +E+ D A LK+++
Sbjct: 250 VR-------EILKIAQEPV-SLETPIGEEDDSHLGDF-IEDQEAQSPSDHAAYELLKEQL 300
Query: 430 NKLIIVTLGEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAAR 488
++ TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R
Sbjct: 301 ED-VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSR 359
Query: 489 KKKMEAML 496
K+++ +
Sbjct: 360 SKRLKDFM 367
>sp|P0A0I8|RPOD_STAAM RNA polymerase sigma factor RpoD OS=Staphylococcus aureus (strain
Mu50 / ATCC 700699) GN=rpoD PE=1 SV=1
Length = 368
Score = 155 bits (392), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 90/248 (36%), Positives = 150/248 (60%), Gaps = 16/248 (6%)
Query: 255 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 314
+A+ +L +N+RLV+SIA+RY G DL+Q G +GL++ +EKFD +KGFK STY W
Sbjct: 130 VAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATW 189
Query: 315 WIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKK 373
WIRQ ++RA+ + +RT+R+P H+ E + LIR + L++ G P+ + I E +++ +K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPAEK 249
Query: 374 VRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWA----LKDEV 429
VR ++ + +E SL GE S++ D +E+ D A LK+++
Sbjct: 250 VR-------EILKIAQEPV-SLETPIGEEDDSHLGDF-IEDQEAQSPSDHAAYELLKEQL 300
Query: 430 NKLIIVTLGEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAAR 488
++ TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R
Sbjct: 301 ED-VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSR 359
Query: 489 KKKMEAML 496
K+++ +
Sbjct: 360 SKRLKDFM 367
>sp|Q5HFJ9|RPOD_STAAC RNA polymerase sigma factor RpoD OS=Staphylococcus aureus (strain
COL) GN=rpoD PE=3 SV=1
Length = 368
Score = 155 bits (392), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 90/248 (36%), Positives = 150/248 (60%), Gaps = 16/248 (6%)
Query: 255 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 314
+A+ +L +N+RLV+SIA+RY G DL+Q G +GL++ +EKFD +KGFK STY W
Sbjct: 130 VAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATW 189
Query: 315 WIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKK 373
WIRQ ++RA+ + +RT+R+P H+ E + LIR + L++ G P+ + I E +++ +K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPAEK 249
Query: 374 VRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWA----LKDEV 429
VR ++ + +E SL GE S++ D +E+ D A LK+++
Sbjct: 250 VR-------EILKIAQEPV-SLETPIGEEDDSHLGDF-IEDQEAQSPSDHAAYELLKEQL 300
Query: 430 NKLIIVTLGEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAAR 488
++ TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R
Sbjct: 301 ED-VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSR 359
Query: 489 KKKMEAML 496
K+++ +
Sbjct: 360 SKRLKDFM 367
>sp|P0A0J0|RPOD_STAA8 RNA polymerase sigma factor RpoD OS=Staphylococcus aureus (strain
NCTC 8325) GN=rpoD PE=3 SV=1
Length = 368
Score = 155 bits (392), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 90/248 (36%), Positives = 150/248 (60%), Gaps = 16/248 (6%)
Query: 255 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 314
+A+ +L +N+RLV+SIA+RY G DL+Q G +GL++ +EKFD +KGFK STY W
Sbjct: 130 VAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATW 189
Query: 315 WIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKK 373
WIRQ ++RA+ + +RT+R+P H+ E + LIR + L++ G P+ + I E +++ +K
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPAEK 249
Query: 374 VRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWA----LKDEV 429
VR ++ + +E SL GE S++ D +E+ D A LK+++
Sbjct: 250 VR-------EILKIAQEPV-SLETPIGEEDDSHLGDF-IEDQEAQSPSDHAAYELLKEQL 300
Query: 430 NKLIIVTLGEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAAR 488
++ TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R
Sbjct: 301 ED-VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSR 359
Query: 489 KKKMEAML 496
K+++ +
Sbjct: 360 SKRLKDFM 367
>sp|Q03066|RPSC_NOSS1 RNA polymerase sigma-C factor OS=Nostoc sp. (strain PCC 7120 / UTEX
2576) GN=sigC PE=3 SV=2
Length = 416
Score = 154 bits (390), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 163/274 (59%), Gaps = 12/274 (4%)
Query: 221 GLSLDDHKLRLKE---RLGSSLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDN 277
G++L D K L E R +++ EL+ + + ++E ++ +N+RLV+S+A++Y N
Sbjct: 139 GINLCDLKPILSEGKRRWAEIAKMTVEELEKMQSQGLQSKEHMIKANLRLVVSVAKKYQN 198
Query: 278 MGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHL 337
G ++ DLVQ G +GL R +EKFD +KG++ STY YWWIRQG++RA+ +SRT+RLP H+
Sbjct: 199 RGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPVHI 258
Query: 338 HERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLN 396
E+L I+ A+ ++ +EKG TP+++ +A L+M+ +VR + + SL+ + +
Sbjct: 259 TEKLNKIKKAQRKIAQEKGRTPTLEDLAIELDMTPTQVREVLLRVPRSVSLETKVGKDKD 318
Query: 397 GLPGETHHSYIADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGL-DKEC 455
GE + P + +L+ ++ L + L RER++I + +GL D
Sbjct: 319 TELGELLETDGV------TPEEMLMRESLQRDLQHL-LADLTSRERDVILMRFGLADGHP 371
Query: 456 LTWEDISKRIGLSRERVRQVGLVALEKLKHAARK 489
+ +I + + LSRERVRQ+ AL+KL+ R+
Sbjct: 372 YSLAEIGRALDLSRERVRQIESKALQKLRQPKRR 405
>sp|P18183|HRDB_STRCO RNA polymerase principal sigma factor HrdB OS=Streptomyces
coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=hrdB
PE=3 SV=2
Length = 511
Score = 154 bits (390), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 104/306 (33%), Positives = 177/306 (57%), Gaps = 20/306 (6%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGSSLRISRPELQSIL 250
+ +K Y+K + LL + V L+K+I+ GL +D KL ++L L+ EL+ I
Sbjct: 213 DPVKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLANSDKLAPKLKR---ELEIIA 268
Query: 251 MECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKIST 310
+ A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +KG+K ST
Sbjct: 269 EDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFST 328
Query: 311 YVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNM 369
Y WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ + +A+ L+M
Sbjct: 329 YATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELAKELDM 388
Query: 370 SQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENN----PWHGVDDWAL 425
+ +KV +V RE SL+ GE S D +E++ P V L
Sbjct: 389 TPEKVI-------EVQKYGREPI-SLHTPLGEDGDSEFGD-LIEDSEAVVPADAVSFTLL 439
Query: 426 KDEVNKLIIVTLGEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLK 484
+++++ ++ TL ERE ++ + +GL D + T ++I K G++RER+RQ+ + KL+
Sbjct: 440 QEQLHS-VLDTLSEREAGVVSMRFGLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLR 498
Query: 485 HAARKK 490
H +R +
Sbjct: 499 HPSRSQ 504
>sp|P77994|RPOD_THEMA RNA polymerase sigma factor RpoD OS=Thermotoga maritima (strain
ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=rpoD PE=1
SV=3
Length = 399
Score = 154 bits (390), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 89/247 (36%), Positives = 149/247 (60%), Gaps = 16/247 (6%)
Query: 256 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 315
A+EKL+ SN+RLV+SIA+RY G DL+Q G IGLL+ +EKFD KG+K STY WW
Sbjct: 155 AKEKLITSNLRLVVSIAKRYMGRGLSFQDLIQEGNIGLLKAVEKFDWRKGYKFSTYATWW 214
Query: 316 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 374
IRQ ++RA+ + +RT+R+P H+ E + L R + ++ G PS++ +A+ + +K+
Sbjct: 215 IRQAITRAIADQARTIRIPVHMVETINKLNRLRREYYQKHGEEPSIEELAKMMGKPPEKI 274
Query: 375 RNATEAIGKVFSLDREAFPSLNGLPGETHHS----YIADNRVENNPWHGVDDWALKDEVN 430
+ EA + SL+ GE S ++AD+ + +P +++E+
Sbjct: 275 KEILEAAKETISLESPI--------GEDEDSSIEDFVADDSI-ASPKKEAMRMLMREELE 325
Query: 431 KLIIVTLGEREREIIRLYYG-LDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARK 489
K ++ TL RE ++R+ YG LD + T E++ + ++RER+RQ+ + AL KL+H +R
Sbjct: 326 K-VLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRS 384
Query: 490 KKMEAML 496
K ++++L
Sbjct: 385 KYLKSLL 391
>sp|P77951|HRDB_STRGR RNA polymerase principal sigma factor HrdB OS=Streptomyces griseus
GN=hrdB PE=1 SV=1
Length = 514
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 104/306 (33%), Positives = 177/306 (57%), Gaps = 20/306 (6%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGSSLRISRPELQSIL 250
+ +K Y+K + LL + V L+K+I+ GL +D KL ++L L+ EL+ I
Sbjct: 216 DPVKDYLKQIGKVPLLNAEQEVELAKRIEAGLFAED-KLANADKLAPKLK---RELEIIA 271
Query: 251 MECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKIST 310
+ A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +KG+K ST
Sbjct: 272 EDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFST 331
Query: 311 YVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNM 369
Y WWIRQ ++RA+ + +RT+R+P H+ E + L R + L++ G P+ + +A+ L+M
Sbjct: 332 YATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELAKELDM 391
Query: 370 SQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENN----PWHGVDDWAL 425
+ +KV +V RE SL+ GE S D +E++ P V L
Sbjct: 392 TPEKVI-------EVQKYGREPI-SLHTPLGEDGDSEFGD-LIEDSEAVVPADAVSFTLL 442
Query: 426 KDEVNKLIIVTLGEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLK 484
+++++ ++ TL ERE ++ + +GL D + T ++I K G++RER+RQ+ + KL+
Sbjct: 443 QEQLHS-VLDTLSEREAGVVSMRFGLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLR 501
Query: 485 HAARKK 490
H +R +
Sbjct: 502 HPSRSQ 507
>sp|Q03065|RPSB_NOSS1 RNA polymerase sigma-B factor OS=Nostoc sp. (strain PCC 7120 / UTEX
2576) GN=sigB PE=3 SV=1
Length = 332
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 164/292 (56%), Gaps = 20/292 (6%)
Query: 205 LLTHAEVVRLSKKIKTGLSLDDHKLRLKERL---------GSSLRISRPELQSILMECSL 255
LL+H + + +++++ + + K L E+L +++ L L + +
Sbjct: 37 LLSHEQEIFFAQQVQQMMVMFTAKEELAEKLQREPTLQEWADKMQLKEDVLLQQLSQGQI 96
Query: 256 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 315
A++K++ +N+RLV+SIA++Y + DL+Q G +GL RG+EKFD + G+K STY YWW
Sbjct: 97 AKQKMIQANLRLVVSIAKKYQKRNLEFLDLIQEGALGLERGVEKFDPTLGYKFSTYAYWW 156
Query: 316 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVDRIAEYLNMSQKKV 374
IRQG++RA+ + SRT+RLP H+ ++L I+ + L +K G V IA+ LN+ ++
Sbjct: 157 IRQGITRAIAQQSRTIRLPIHMADKLNKIKCVQRELSQKLGYIAGVTEIAQALNLEPSQI 216
Query: 375 RNATEAIGKVFSLDREAFPSLNGLPGETH-HSYIADNRVENNPWHGVDDWALKDEVNKLI 433
R + + + SLD G +T + D+ + +P + L +++ L
Sbjct: 217 REYLQLVRQPVSLDMRI-----GFEQDTQLQDLLKDDGM--SPERYAERELLYQDIHNL- 268
Query: 434 IVTLGEREREIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQVGLVALEKLK 484
+ L +++E++ L +GL C LT IS+R+G+SRERVRQV AL L+
Sbjct: 269 LAKLTPQQKEVLILRFGLAGGCELTLVQISQRMGISRERVRQVEKQALTLLR 320
>sp|P52331|RPOD_LISMO RNA polymerase sigma factor RpoD OS=Listeria monocytogenes serovar
1/2a (strain ATCC BAA-679 / EGD-e) GN=rpoD PE=3 SV=1
Length = 374
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/247 (36%), Positives = 149/247 (60%), Gaps = 16/247 (6%)
Query: 256 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 315
A+ +L +N+RLV+SIA+RY G DL+Q G +GL++ +EKFD +KGFK STY WW
Sbjct: 137 AKGRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDFNKGFKFSTYATWW 196
Query: 316 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 374
IRQ ++RA+ + +RT+R+P H+ E + LIR + L++ G PS + I E +++ +KV
Sbjct: 197 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDLGRDPSPEEIGEEMDLPTEKV 256
Query: 375 RNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWA----LKDEVN 430
R ++ + +E SL GE S++ D +E+ D A LK+++
Sbjct: 257 R-------EILKIAQEPV-SLETPIGEEDDSHLGDF-IEDQDATSPSDHAAYELLKEQLE 307
Query: 431 KLIIVTLGEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARK 489
++ TL +RE ++RL +GLD T E++ + G++RER+RQ+ AL KL+H +R
Sbjct: 308 D-VLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRS 366
Query: 490 KKMEAML 496
K+++ L
Sbjct: 367 KQLKDFL 373
>sp|Q92BQ6|RPOD_LISIN RNA polymerase sigma factor RpoD OS=Listeria innocua serovar 6a
(strain CLIP 11262) GN=rpoD PE=3 SV=1
Length = 374
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/247 (36%), Positives = 149/247 (60%), Gaps = 16/247 (6%)
Query: 256 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 315
A+ +L +N+RLV+SIA+RY G DL+Q G +GL++ +EKFD +KGFK STY WW
Sbjct: 137 AKGRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDFNKGFKFSTYATWW 196
Query: 316 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 374
IRQ ++RA+ + +RT+R+P H+ E + LIR + L++ G PS + I E +++ +KV
Sbjct: 197 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDLGRDPSPEEIGEEMDLPTEKV 256
Query: 375 RNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWA----LKDEVN 430
R ++ + +E SL GE S++ D +E+ D A LK+++
Sbjct: 257 R-------EILKIAQEPV-SLETPIGEEDDSHLGDF-IEDQDATSPSDHAAYELLKEQLE 307
Query: 431 KLIIVTLGEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARK 489
++ TL +RE ++RL +GLD T E++ + G++RER+RQ+ AL KL+H +R
Sbjct: 308 D-VLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRS 366
Query: 490 KKMEAML 496
K+++ L
Sbjct: 367 KQLKDFL 373
>sp|P59117|RPOD_LEPIN RNA polymerase sigma factor RpoD OS=Leptospira interrogans
serogroup Icterohaemorrhagiae serovar Lai (strain 56601)
GN=rpoD PE=3 SV=1
Length = 585
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/243 (36%), Positives = 148/243 (60%), Gaps = 8/243 (3%)
Query: 252 ECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTY 311
E S A+++LV +N+RLV+SIA+RY N G DL+Q G IGL++ ++KF+ KG+K STY
Sbjct: 343 EISQAKKELVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTY 402
Query: 312 VYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMS 370
WWIRQ ++RA+ + +RT+R+P H+ E++ +IR +L ++E G P+ + IAE L
Sbjct: 403 ATWWIRQAITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAERLGWP 462
Query: 371 QKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWALKDEVN 430
+KV+ + SL+ + G+ +I D VE P + L +++
Sbjct: 463 VQKVKMVKNVAREPISLEIPVGSEEDSELGD----FIPDTEVE-TPVNAAASSILAEQIR 517
Query: 431 KLIIVTLGEREREIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQVGLVALEKLKHAARK 489
+ ++ TL RE+++IR+ +GLD T E++ + ++RER+RQ+ AL +L+H +R
Sbjct: 518 Q-VLHTLPAREQKVIRMRFGLDDGYPQTLEEVGYQFKVTRERIRQIEAKALRRLRHPSRS 576
Query: 490 KKM 492
KK+
Sbjct: 577 KKL 579
>sp|P61540|RPOD_LEPIC RNA polymerase sigma factor RpoD OS=Leptospira interrogans
serogroup Icterohaemorrhagiae serovar copenhageni
(strain Fiocruz L1-130) GN=rpoD PE=3 SV=1
Length = 585
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/243 (36%), Positives = 148/243 (60%), Gaps = 8/243 (3%)
Query: 252 ECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTY 311
E S A+++LV +N+RLV+SIA+RY N G DL+Q G IGL++ ++KF+ KG+K STY
Sbjct: 343 EISQAKKELVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTY 402
Query: 312 VYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMS 370
WWIRQ ++RA+ + +RT+R+P H+ E++ +IR +L ++E G P+ + IAE L
Sbjct: 403 ATWWIRQAITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAERLGWP 462
Query: 371 QKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWALKDEVN 430
+KV+ + SL+ + G+ +I D VE P + L +++
Sbjct: 463 VQKVKMVKNVAREPISLEIPVGSEEDSELGD----FIPDTEVE-TPVNAAASSILAEQIR 517
Query: 431 KLIIVTLGEREREIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQVGLVALEKLKHAARK 489
+ ++ TL RE+++IR+ +GLD T E++ + ++RER+RQ+ AL +L+H +R
Sbjct: 518 Q-VLHTLPAREQKVIRMRFGLDDGYPQTLEEVGYQFKVTRERIRQIEAKALRRLRHPSRS 576
Query: 490 KKM 492
KK+
Sbjct: 577 KKL 579
>sp|Q31QG5|RPOD3_SYNE7 RNA polymerase sigma factor rpoD3 OS=Synechococcus elongatus
(strain PCC 7942) GN=rpoD3 PE=3 SV=1
Length = 320
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 99/309 (32%), Positives = 174/309 (56%), Gaps = 25/309 (8%)
Query: 193 LKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLG----------SSLRIS 242
++ Y++ + LLTH E V L K+++ + L + + L+ G ++ +S
Sbjct: 12 VRTYLREIGRVPLLTHEEEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLEWAAAAGLS 71
Query: 243 RPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDS 302
EL+ A+ K++ +N+RLV+S+A++Y D+ DL+Q G IG+ RG+EKFD
Sbjct: 72 IEELRQQQHLGEQAKRKMIEANLRLVVSVAKKYLKRNMDLLDLIQEGTIGMQRGVEKFDP 131
Query: 303 SKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK-GVTPSVD 361
+KG++ STY YWWIRQ ++RA+ E +RT+RLP H+ E+L I+ + +L ++ G T ++
Sbjct: 132 TKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKMQRQLSQQLGRTATLP 191
Query: 362 RIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENN---PWH 418
+A L+++ +VR+ E SLD G+ + + D +E + P
Sbjct: 192 ELAAALDLTPAQVRDYLEKARHPLSLDLRV--------GDNQDTELGDL-LETDCTTPEE 242
Query: 419 GVDDWALKDEVNKLIIVTLGEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGL 477
+++ ++++L + L E++R++I L YGL D + +T I R+ +SRERVRQ+
Sbjct: 243 FTLQASMRRDIDRL-LDQLTEQQRQVIALRYGLEDGQVMTLASIGDRLQISRERVRQLER 301
Query: 478 VALEKLKHA 486
AL L+ A
Sbjct: 302 EALHTLRQA 310
>sp|P06224|RPOD_BACSU RNA polymerase sigma factor RpoD OS=Bacillus subtilis (strain 168)
GN=sigA PE=1 SV=2
Length = 371
Score = 153 bits (387), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/247 (36%), Positives = 150/247 (60%), Gaps = 16/247 (6%)
Query: 256 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 315
++ +L +N+RLV+SIA+RY G DL+Q G +GL++ +EKFD KG+K STY WW
Sbjct: 134 SKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDYRKGYKFSTYATWW 193
Query: 316 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 374
IRQ ++RA+ + +RT+R+P H+ E + LIR + L++ G P+ + IAE ++++ +KV
Sbjct: 194 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEDMDLTPEKV 253
Query: 375 RNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWA----LKDEVN 430
R ++ + +E SL GE S++ D +E+ D A LK+++
Sbjct: 254 R-------EILKIAQEPV-SLETPIGEEDDSHLGDF-IEDQEATSPSDHAAYELLKEQLE 304
Query: 431 KLIIVTLGEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARK 489
++ TL +RE ++RL +GLD T E++ K G++RER+RQ+ AL KL+H +R
Sbjct: 305 D-VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS 363
Query: 490 KKMEAML 496
K+++ L
Sbjct: 364 KRLKDFL 370
>sp|P74565|RPOD_SYNY3 RNA polymerase sigma factor RpoD OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=rpoD PE=3 SV=1
Length = 425
Score = 153 bits (387), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/244 (38%), Positives = 139/244 (56%), Gaps = 27/244 (11%)
Query: 256 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 315
A++K+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG+K STY WW
Sbjct: 189 AKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 248
Query: 316 IRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 374
IRQ ++RA+ + SRT+RLP HL+E + I + KL +E P+ + IAE + M+ +K+
Sbjct: 249 IRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIAEKMEMTIEKL 308
Query: 375 RNATEAIGKVFSLDREAFP-SLNGLPGETHHSYIADNRVENNPWHGVDDWALKDEVNK-- 431
R F P SL G+ S + D + D +DEV+K
Sbjct: 309 R---------FIAKSAQLPISLETPIGKEEDSRLGD-------FIEADGETPEDEVSKNL 352
Query: 432 ------LIIVTLGEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLK 484
++ TL RER+++RL YGLD + T E+I + ++RER+RQ+ AL KL+
Sbjct: 353 LREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 412
Query: 485 HAAR 488
H R
Sbjct: 413 HPNR 416
>sp|Q59753|RPOD_RHIME RNA polymerase sigma factor RpoD OS=Rhizobium meliloti (strain
1021) GN=rpoD PE=3 SV=1
Length = 684
Score = 153 bits (387), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 147/249 (59%), Gaps = 12/249 (4%)
Query: 252 ECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTY 311
E +A++++V +N+RLV+SIA++Y N G DL+Q G IGL++ ++KF+ +G+K STY
Sbjct: 442 EARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY 501
Query: 312 VYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMS 370
WWIRQ ++R++ + +RT+R+P H+ E + ++R ++ L E G P+ + +AE L M
Sbjct: 502 ATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMP 561
Query: 371 QKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWALKD--E 428
+KVR KV + +E SL G+ S++ D + N +D + E
Sbjct: 562 LEKVR-------KVLKIAKEPI-SLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRE 613
Query: 429 VNKLIIVTLGEREREIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQVGLVALEKLKHAA 487
++ +L RE ++R+ +G+ T E++ ++ ++RER+RQ+ AL KLKH +
Sbjct: 614 TTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPS 673
Query: 488 RKKKMEAML 496
R +K+ + L
Sbjct: 674 RSRKLRSFL 682
>sp|P0A602|RPOD_MYCTU RNA polymerase sigma factor RpoD OS=Mycobacterium tuberculosis
GN=rpoD PE=1 SV=1
Length = 528
Score = 153 bits (386), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 98/307 (31%), Positives = 172/307 (56%), Gaps = 18/307 (5%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGSSLRISRPELQSIL 250
+ ++ Y+K + LL E V L+K+I+ GL L ER R ++ I
Sbjct: 226 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWIC 285
Query: 251 MECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKIST 310
+ A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +KG+K ST
Sbjct: 286 RDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFST 345
Query: 311 YVYWWIRQGVSRALVENSRTLRLPNHLHE---RLGLIRNAKLRLEEKGVTPSVDRIAEYL 367
Y WWIRQ ++RA+ + +RT+R+P H+ E +LG I+ + L++ G P+ + +A+ +
Sbjct: 346 YATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQ--RELLQDLGREPTPEELAKEM 403
Query: 368 NMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWA--- 424
+++ +KV + + SLD+ G+ S + D ++ VD +
Sbjct: 404 DITPEKVLEIQQYAREPISLDQTI--------GDEGDSQLGDFIEDSEAVVAVDAVSFTL 455
Query: 425 LKDEVNKLIIVTLGEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 483
L+D++ ++ TL ERE ++RL +GL D + T ++I + G++RER+RQ+ + KL
Sbjct: 456 LQDQLQS-VLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKL 514
Query: 484 KHAARKK 490
+H +R +
Sbjct: 515 RHPSRSQ 521
>sp|P0A603|RPOD_MYCBO RNA polymerase sigma factor RpoD OS=Mycobacterium bovis (strain
ATCC BAA-935 / AF2122/97) GN=rpoD PE=3 SV=1
Length = 528
Score = 153 bits (386), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 98/307 (31%), Positives = 172/307 (56%), Gaps = 18/307 (5%)
Query: 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGSSLRISRPELQSIL 250
+ ++ Y+K + LL E V L+K+I+ GL L ER R ++ I
Sbjct: 226 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWIC 285
Query: 251 MECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKIST 310
+ A+ L+ +N+RLV+S+A+RY G DL+Q G +GL+R +EKFD +KG+K ST
Sbjct: 286 RDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFST 345
Query: 311 YVYWWIRQGVSRALVENSRTLRLPNHLHE---RLGLIRNAKLRLEEKGVTPSVDRIAEYL 367
Y WWIRQ ++RA+ + +RT+R+P H+ E +LG I+ + L++ G P+ + +A+ +
Sbjct: 346 YATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQ--RELLQDLGREPTPEELAKEM 403
Query: 368 NMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWA--- 424
+++ +KV + + SLD+ G+ S + D ++ VD +
Sbjct: 404 DITPEKVLEIQQYAREPISLDQTI--------GDEGDSQLGDFIEDSEAVVAVDAVSFTL 455
Query: 425 LKDEVNKLIIVTLGEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKL 483
L+D++ ++ TL ERE ++RL +GL D + T ++I + G++RER+RQ+ + KL
Sbjct: 456 LQDQLQS-VLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKL 514
Query: 484 KHAARKK 490
+H +R +
Sbjct: 515 RHPSRSQ 521
>sp|Q2K619|RPOD_RHIEC RNA polymerase sigma factor rpoD OS=Rhizobium etli (strain CFN 42 /
ATCC 51251) GN=sigA PE=1 SV=1
Length = 685
Score = 152 bits (385), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 147/249 (59%), Gaps = 12/249 (4%)
Query: 252 ECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTY 311
E +A++++V +N+RLV+SIA++Y N G DL+Q G IGL++ ++KF+ +G+K STY
Sbjct: 443 EARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY 502
Query: 312 VYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMS 370
WWIRQ ++R++ + +RT+R+P H+ E + ++R ++ L E G P+ + +AE L M
Sbjct: 503 ATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMP 562
Query: 371 QKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWALKD--E 428
+KVR KV + +E SL G+ S++ D + N +D + E
Sbjct: 563 LEKVR-------KVLKIAKEPI-SLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRE 614
Query: 429 VNKLIIVTLGEREREIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQVGLVALEKLKHAA 487
++ +L RE ++R+ +G+ T E++ ++ ++RER+RQ+ AL KLKH +
Sbjct: 615 TTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPS 674
Query: 488 RKKKMEAML 496
R +K+ + L
Sbjct: 675 RSRKLRSFL 683
>sp|P33452|RPOD_AGRT5 RNA polymerase sigma factor RpoD OS=Agrobacterium tumefaciens
(strain C58 / ATCC 33970) GN=rpoD PE=3 SV=2
Length = 684
Score = 152 bits (385), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 147/249 (59%), Gaps = 12/249 (4%)
Query: 252 ECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTY 311
E +A++++V +N+RLV+SIA++Y N G DL+Q G IGL++ ++KF+ +G+K STY
Sbjct: 442 EARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY 501
Query: 312 VYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMS 370
WWIRQ ++R++ + +RT+R+P H+ E + ++R ++ L E G P+ + +AE L M
Sbjct: 502 ATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMP 561
Query: 371 QKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWALKD--E 428
+KVR KV + +E SL G+ S++ D + N +D + E
Sbjct: 562 LEKVR-------KVLKIAKEPI-SLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRE 613
Query: 429 VNKLIIVTLGEREREIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQVGLVALEKLKHAA 487
++ +L RE ++R+ +G+ T E++ ++ ++RER+RQ+ AL KLKH +
Sbjct: 614 TTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPS 673
Query: 488 RKKKMEAML 496
R +K+ + L
Sbjct: 674 RSRKLRSFL 682
>sp|P18249|HRDD_STRCO RNA polymerase principal sigma factor HrdD OS=Streptomyces
coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=hrdD
PE=3 SV=2
Length = 332
Score = 151 bits (382), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 111/315 (35%), Positives = 164/315 (52%), Gaps = 20/315 (6%)
Query: 187 ELIQNRLKG-YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGSSLRISRPE 245
EL L G Y+ + LL A+ V LS+ I+ G+ L E G+ +R E
Sbjct: 29 ELADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGV-FARQVLEGYEETGAD--ATREE 85
Query: 246 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKG 305
LQ+++ E A++ + SN+RLV+++A+RY G + DL+Q G GL+R +EKFD KG
Sbjct: 86 LQALIDESERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKG 145
Query: 306 FKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIA 364
FK STY WWIRQ ++R++ + SRT+RLP HL E LG IR + E G P IA
Sbjct: 146 FKFSTYATWWIRQAITRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGREPEPAEIA 205
Query: 365 EYLNMSQKKVRN----ATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGV 420
L + ++V + A + + S+D E GET + ++ +P V
Sbjct: 206 AELGSTPERVTDVLDWARDPVSLNMSVDDE---------GETQFGDLLEDTSAVSPEQSV 256
Query: 421 DDWALKDEVNKLIIVTLGEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVA 479
+E++ L I L R II++ YG+D T ++ K GL+RER+RQ+ A
Sbjct: 257 LTLLRSEELDDL-IGRLDPRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHA 315
Query: 480 LEKLKHAARKKKMEA 494
L +LK AR EA
Sbjct: 316 LLELKKLARDTGFEA 330
>sp|P52322|RPOD_MICAE RNA polymerase sigma factor rpoD1 OS=Microcystis aeruginosa
GN=rpoD1 PE=3 SV=1
Length = 416
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 140/239 (58%), Gaps = 17/239 (7%)
Query: 256 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 315
A+EK+V SN+RLV+SIA++Y N G DL+Q G +GL+R EKFD KG+K STY WW
Sbjct: 180 AKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 239
Query: 316 IRQGVSRALVENSRTLRLPNHLHERLGLI-RNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 374
IRQ ++RA+ + SRT+RLP HL+E + I + K+ +E P+ + IA + M+ +K+
Sbjct: 240 IRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKL 299
Query: 375 RNATEAIGKVFSLDREAFP-SLNGLPGETHHSYIADNRVENN---PWHGVDDWALKDEVN 430
R F P SL G+ S + D +E + P V L++++
Sbjct: 300 R---------FIAKSAQLPISLETPIGKEEDSRLGDF-IEADGETPEDEVSKNLLREDLE 349
Query: 431 KLIIVTLGEREREIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKHAAR 488
++ TL RER+++RL YGLD + T E+I + ++RER+RQ+ AL KL+H R
Sbjct: 350 N-VLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNR 407
>sp|Q31ME3|RPOD2_SYNE7 RNA polymerase sigma factor rpoD2 OS=Synechococcus elongatus
(strain PCC 7942) GN=rpoD2 PE=1 SV=1
Length = 320
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/315 (30%), Positives = 182/315 (57%), Gaps = 22/315 (6%)
Query: 185 SPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLG-------- 236
SP+L+ + Y++ + LLT E + ++++ + L D + L++RLG
Sbjct: 9 SPDLV----RAYLQEIGRVRLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEW 64
Query: 237 -SSLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLR 295
+++ ++ +L + + A+ K++ +N+RLV+SIA++Y + DL+Q G +GL R
Sbjct: 65 AAAVDLNLEDLDRQIEQGQRAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGLER 124
Query: 296 GIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEK- 354
G+EKFD SKG+K STY YWWIRQ ++RA+ + SRT+RLP H+ E+L ++ + L ++
Sbjct: 125 GVEKFDPSKGYKFSTYAYWWIRQAITRAIAQQSRTIRLPIHITEKLNKLKKTQRELSQQL 184
Query: 355 GVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVEN 414
G + + +AE L + ++VR + + SLD + G +T + ++ ++
Sbjct: 185 GRSATASELAEVLELPLEQVREYIQMNRQPVSLDVKV-----GDSQDTELQELLEDE-QS 238
Query: 415 NPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVR 473
+P V+ +L+ ++ L + L +++ +I L YGLD+ + L+ + +R+ +SRERVR
Sbjct: 239 SPSDYVEQESLRRDLRNL-MAELTPQQQAVIALRYGLDEGDSLSLAKVGERLNISRERVR 297
Query: 474 QVGLVALEKLKHAAR 488
++ A++ L+ +R
Sbjct: 298 KLERQAMDHLRRRSR 312
>sp|Q59914|HRDD_STRGR RNA polymerase principal sigma factor HrdD OS=Streptomyces griseus
GN=hrdD PE=3 SV=1
Length = 332
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 105/305 (34%), Positives = 163/305 (53%), Gaps = 18/305 (5%)
Query: 196 YVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGSSLRISRPELQSILMECSL 255
Y+ + LL A+ V LS+ I+ G+ K+ E S SR EL++++ E
Sbjct: 38 YLDEIARTPLLDAAKEVELSQTIEAGVYA--GKILDGEVDSDSAGASREELEALVAEGER 95
Query: 256 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 315
A++ + SN+RLV+++A+RY G + DL+Q G GL+R +EKFD +KGFK STY WW
Sbjct: 96 AKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWW 155
Query: 316 IRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL-EEKGVTPSVDRIAEYLNMSQKKV 374
IRQ ++R++ + SRT+RLP HL E LG IR + E G P IA L+ + ++V
Sbjct: 156 IRQAITRSIADQSRTIRLPVHLVEELGRIRRVQREFNRENGRDPEPAEIAAELSSTPERV 215
Query: 375 RN----ATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWALKDEVN 430
+ A + + S+D E GET + ++ +P V +E++
Sbjct: 216 TDVLDWARDPVSLNMSVDDE---------GETQFGDLLEDTSAVSPEQSVLTLLRSEELD 266
Query: 431 KLIIVTLGEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARK 489
L I L +R II++ YG+ D T ++ K+ GL+RER+RQ+ AL +LK A
Sbjct: 267 DL-IGQLDDRTASIIKMRYGIEDGRERTLTEVGKQHGLTRERIRQIEKHALLELKRMAHD 325
Query: 490 KKMEA 494
+A
Sbjct: 326 TGFDA 330
>sp|Q9Z7F0|RPOD_CHLPN RNA polymerase sigma factor RpoD OS=Chlamydia pneumoniae GN=rpoD
PE=3 SV=1
Length = 572
Score = 150 bits (378), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 89/247 (36%), Positives = 145/247 (58%), Gaps = 16/247 (6%)
Query: 256 AREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 315
A++++V SN+RLV+SIA++Y N G DL+Q G +GL++ +EKF+ +G+K STY WW
Sbjct: 317 AKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYKFSTYATWW 376
Query: 316 IRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 374
IRQ V+RA+ + +RT+R+P H+ E + ++R AK + E G P+ + +AE L ++ +V
Sbjct: 377 IRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTPEELAEELGLTPDRV 436
Query: 375 RNATEAIGKVFSLDREAFPSLNGLPGETHHS----YIADNRVENNPWHGVDDWALKDEVN 430
R + SL E GE S ++ D VE +P LKD++
Sbjct: 437 REIYKIAQHPISLQAEV--------GEGSESSFGDFLEDTAVE-SPAEATGYSMLKDKM- 486
Query: 431 KLIIVTLGEREREIIRLYYG-LDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARK 489
K ++ TL +RER ++ +G LD + T E++ ++RER+RQ+ AL K++H R
Sbjct: 487 KEVLKTLTDRERFVLIHRFGLLDGKPKTLEEVGSAFNVTRERIRQIEAKALRKMRHPIRS 546
Query: 490 KKMEAML 496
K++ A L
Sbjct: 547 KQLRAFL 553
>sp|P52324|RPOD_CAUCR RNA polymerase sigma factor RpoD OS=Caulobacter crescentus (strain
ATCC 19089 / CB15) GN=rpoD PE=3 SV=1
Length = 652
Score = 150 bits (378), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 90/282 (31%), Positives = 160/282 (56%), Gaps = 24/282 (8%)
Query: 219 KTGLSLDDHKLRLKERLGSSLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNM 278
+TG+ +DD++ RI + +Q E A++++V +N+RLV+SIA++Y N
Sbjct: 389 ETGVPIDDYR-----------RIVQT-VQKGEREARQAKKEMVEANLRLVISIAKKYTNR 436
Query: 279 GADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLH 338
G DL+Q G IGL++ ++KF+ +G+K STY WWIRQ ++R++ + +RT+R+P H+
Sbjct: 437 GLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMI 496
Query: 339 ERLG-LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNG 397
E + ++R ++ L E G P+ + +AE L M +KVR KV + +E SL
Sbjct: 497 ETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVR-------KVLKIAKEPI-SLET 548
Query: 398 LPGETHHSYIADNRVENNPWHGVDDWALKD--EVNKLIIVTLGEREREIIRLYYGLDKEC 455
G+ S++ D + N +D + E ++ +L RE ++R+ +G+
Sbjct: 549 PIGDEEDSHLGDFIEDKNAILPIDAAIQSNLRETTTRVLASLTPREERVLRMRFGIGMNT 608
Query: 456 -LTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKKMEAML 496
T E++ ++ ++RER+RQ+ AL KLKH +R +K+ + L
Sbjct: 609 DHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFL 650
>sp|Q1RKH7|RPOD_RICBR RNA polymerase sigma factor RpoD OS=Rickettsia bellii (strain
RML369-C) GN=rpoD PE=3 SV=1
Length = 641
Score = 149 bits (377), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 99/314 (31%), Positives = 172/314 (54%), Gaps = 26/314 (8%)
Query: 188 LIQNRLKGYVKGVVSEELLTHAEVVRLSK-KIKTGLSLDDHKLRLKERLGSSLRIS-RPE 245
+++N+ G+ + + E + LS +I TGL ++D K +L ++++ S R
Sbjct: 331 MLKNKKAGWKELLTKESDYIDQMIAELSAIEINTGLLVNDFK-----KLVNAIQKSERQT 385
Query: 246 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKG 305
LQ A++ ++ +N+RLV+SIA++Y N G DL+Q G IGL++ ++KF+ +G
Sbjct: 386 LQ--------AKKDMIEANLRLVISIAKKYANRGLQFLDLIQEGNIGLMKAVDKFEYRRG 437
Query: 306 FKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIA 364
+K STY WWIRQ ++RA+ + +RT+R+P H+ E + +IR ++ L E G P+ IA
Sbjct: 438 YKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKIIRTSRQMLNELGYEPTPAEIA 497
Query: 365 EYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWA 424
L+M KVR KV + +E N + +SY+ D + N +D
Sbjct: 498 ARLSMPIDKVR-------KVMKIAKEPISLENPVGDGDDNSYLGDFIEDKNAVAPIDAAI 550
Query: 425 LKD--EVNKLIIVTLGEREREIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQVGLVALE 481
+ EV ++ TL RE ++R+ +G+ T E++ ++ ++RER+RQ+ AL
Sbjct: 551 QSNLREVTTRVLATLTPREERVLRMRFGIGMNTDHTLEEVGQQFKVTRERIRQIESKALR 610
Query: 482 KLKHAARKKKMEAM 495
KL+H R KK+ +
Sbjct: 611 KLQHPIRSKKLNSF 624
>sp|P56835|RPOD_CHLMU RNA polymerase sigma factor RpoD OS=Chlamydia muridarum (strain
MoPn / Nigg) GN=rpoD PE=3 SV=1
Length = 571
Score = 149 bits (377), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 90/254 (35%), Positives = 147/254 (57%), Gaps = 10/254 (3%)
Query: 246 LQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKG 305
LQ + + A++++V SN+RLV+SIA++Y N G DL+Q G +GL++ +EKF+ +G
Sbjct: 307 LQRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRG 366
Query: 306 FKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG-LIRNAKLRLEEKGVTPSVDRIA 364
+K STY WWIRQ V+RA+ + +RT+R+P H+ E + ++R AK + E G P+ + +
Sbjct: 367 YKFSTYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTPEELG 426
Query: 365 EYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHH-SYIADNRVENNPWHGVDDW 423
E L + +VR + SL E G GE+ ++ D VE +P
Sbjct: 427 EELGFTPDRVREIYKIAQHPISLQAEV-----GDSGESSFGDFLEDTAVE-SPAEATGYS 480
Query: 424 ALKDEVNKLIIVTLGEREREIIRLYYG-LDKECLTWEDISKRIGLSRERVRQVGLVALEK 482
LKD++ K ++ TL +RER ++ +G LD T E++ ++RER+RQ+ AL K
Sbjct: 481 MLKDKM-KEVLKTLTDRERFVLIHRFGLLDGRPKTLEEVGSAFNVTRERIRQIEAKALRK 539
Query: 483 LKHAARKKKMEAML 496
++H R K++ A L
Sbjct: 540 MRHPIRSKQLRAFL 553
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 173,509,418
Number of Sequences: 539616
Number of extensions: 7135232
Number of successful extensions: 23362
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 22885
Number of HSP's gapped (non-prelim): 260
length of query: 499
length of database: 191,569,459
effective HSP length: 122
effective length of query: 377
effective length of database: 125,736,307
effective search space: 47402587739
effective search space used: 47402587739
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)